Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 143 of 402
Found at i:16861812 original size:26 final size:26
Alignment explanation
Indices: 16861778--16861828 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16861768 TGGCTTAGGC
16861778 ATACAGAGTTCATTCC-ATGTCTAAGG
1 ATACAGAGTTCATTCCTA-GTCTAAGG
*
16861804 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCTAGTCTAAG
16861829 ATCCGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCTAGTCTAAGG
Found at i:16862186 original size:26 final size:26
Alignment explanation
Indices: 16862155--16862207 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16862145 GTTGACTTAG
*
16862155 GCATACAGATTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16862181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16862207 G
1 G
16862208 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16862646 original size:159 final size:157
Alignment explanation
Indices: 16862181--16863354 Score: 541
Period size: 159 Copynumber: 7.2 Consensus size: 157
16862171 CCCAGTCTAA
* * *
16862181 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTA-GATCGAGGGTTGCGACAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAC-AGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * * * *
16862244 TAGCACGCAGGGGGGATCAGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGGGAG
64 TAGCACGCAGGGGGGA-CTGGGCGATCCCCAGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCG
* *
16862309 -CTCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCT-GCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
16862339 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACAGGACCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACAGGACCGAGGGTTGCGGCAGCAGGATC-GG
* * * * ** * * * *
16862402 CAGCACACAGAGGGGGACCGAGCTGATCCCCAGCTTGTGCATTATGCCTCT-TCGACTGGCTCAT
64 TAGCACGCAG-GGGGGACTGGGC-GATCCCCAGCTTACGCATTCTGCCTCTCT-GACCGGCTGAG
* * *
16862466 CACCCTGCACGCTCGTTTCGTGGGTTGACTTAT
126 C-GCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
16862499 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATCGGT
*** *
16862563 AGCACGCAGGGGGGACTGGGTCGATCCTTGGCTTACGCATTCTGCCTCTCTGGCCGGACTGAGCG
65 AGCACGCAGGGGGGACTGGG-CGATCCCCAGCTTACGCATTCTGCCTCTCTGACCGG-CTGAGCG
* *
16862628 CCTGTACGCTCGTTTCGTGGTTTGGCTTAG
128 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
** * *
16862658 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA-GACTGAAGGTTGTGGTAGTAGGACTGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACAGGACCG-A----G-GGT--T--G-C-GGC
* * * * * * *
16862722 AGCAGGATTGGCAGCACGCAGAGGGGA-TCGGGCTGAT-CCCTGACTTGCGCATTATGCCTCTCC
53 AGCAGGATCGGTAGCACGCAGGGGGGACT-GGGC-GATCCCCAG-CTTACGCATTCTGCCTCTCT
* ** ** * *
16862785 GACCGACTGAGTACCCACACGCTCGTTTCGTTGGTTGACTTAG
115 GACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* *** * *
16862828 GCATACGGAGTTCATCCCA-GTCTAAGATACAGAGTTCATTCCCAGTCTAGGATCAGACCGGACC
1 GCATACGGAGTTCATTCCATGTCTAAGAT-CAGA---CAGGACC-G---AGGGT-TG--CGG--C
* * * * * * *
16862892 GAGGGTTACGGTAGCAGGATCGCCAGCACACAGGGGGGACCGGGCCGAT-CCCTGACTTGCGTAT
53 -A--G-CA-GG-ATC-GG-T----AGCACGCAGGGGGGACTGGG-CGATCCCCAG-CTTACGCAT
* ** * * *
16862956 TCTGCCTCTCCGGTCGGCTGAACGCCCGCACG-TCCGTTTCATGGGTTGGCTTAG
104 TCTGCCTCTCTGACCGGCTGAGCGCCTGCACGCT-CGTTTCGTGGGTTGGCTTAG
* ** * * * * *
16863010 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACAGGACCGAGGGTTGCGGCAGCAGGATCGGT
* * * * * * * * *
16863074 AGCATGTAGAGGGGGACCGGGCCGATCCCCGAG-TTGCACATTATGCCTCT-TCGTCTGGCTCAG
65 AGCACGCAG-GGGGGACTGGG-CGATCCCC-AGCTTACGCATTCTGCCTCTCT-GACCGGCTGAG
* * * * * * * *
16863137 CTCCCGCACACTCTTTTTGTCGGTTGACTTAT
126 CGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
16863169 GCATACGGAGTTCATTCCCA-GTCTCAGATC-GAACCGAACCGAGGGTTGTGACTA-TAAGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-ACAGGACCGAGGGTTGCGGC-AGCAGGATCG
** * * * ** *
16863231 ACAGCTCGCAAGGGGGGATCGGGGCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAG
63 GTAGCACGC-AGGGGGGA-CTGGGCGATCCCCAGCTTACGCATTCTGCCTCTCTGACCGGCTGAG
* *
16863296 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
126 CGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
16863328 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16863355 CATACGGAGT
Statistics
Matches: 758, Mismatches: 184, Indels: 147
0.70 0.17 0.13
Matches are distributed among these distances:
157 6 0.01
158 70 0.09
159 308 0.41
160 102 0.13
161 7 0.01
162 1 0.00
163 2 0.00
164 3 0.00
165 5 0.01
167 2 0.00
168 3 0.00
169 13 0.02
170 54 0.07
171 56 0.07
172 5 0.01
173 2 0.00
174 3 0.00
175 6 0.01
176 2 0.00
177 2 0.00
178 1 0.00
179 2 0.00
181 1 0.00
182 91 0.12
183 11 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATCGGTA
GCACGCAGGGGGGACTGGGCGATCCCCAGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCCT
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16862862 original size:24 final size:25
Alignment explanation
Indices: 16862830--16862884 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 25
16862820 TGACTTAGGC
*
16862830 ATACGGAGTTCA-TCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
*
16862854 ATACAGAGTTCATTCCCAGTCTAGG
1 ATACAGAGTTCATTCCCAGTCTAAG
16862879 AT-CAGA
1 ATACAGA
16862885 CCGGACCGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 15 0.54
25 13 0.46
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (25 bp):
ATACAGAGTTCATTCCCAGTCTAAG
Found at i:16863247 original size:671 final size:676
Alignment explanation
Indices: 16861865--16863355 Score: 1830
Period size: 671 Copynumber: 2.2 Consensus size: 676
16861855 GCAGGACCAG
* * * * *
16861865 CAGCAGGATCGATAGCACGTA-GGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCT-TC
1 CAGCAAGATCGACAGCACGCAGGGGGGATCGGGGCGATCCTCGGCTTGCGCATTCTGCCTCTCT-
* * * **
16861928 GGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTCGGCATATAGAGTTCATTCCATGT
65 GGCCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
16861993 CTAAGCCCCAACCGAACCAAGGGTTATGGCAGTAAGACCGGTAGAGGGATTGATAGCACGCAGAA
130 CTAAGCCCCAACCGAACCAAGGGTTATGGCAGTAAGACCGGCAGAGGGATTGACAGCACGCAGAA
*
16862058 GGGGACCAGGCTGATCCCCGGCTTGAACATTATGCCTCTCCGGTCGACCTTTCTGTCCGACTGAG
195 GGGGACCAGGCTGATCCCCGACTTGAACATTATGCCTCTCC-G-CGA--------TCCGACTGAG
*** * *
16862123 TACCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGATTTCATCCCCAGTCTAAGCATACG
250 TACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACA
* * * * ** *
16862188 GAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGACAGCAGGATCGGTAGCACGCA
315 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGCCAGCACACA
* * * *
16862253 GGGGGGATCAGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGGGAGCTCGCACGC
380 GGGGGGACCAGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGGAAGCCCGCACGC
16862318 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAGGACCGAGG
445 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAGGACCGAGG
* * **
16862383 GTTGTGGCAGCGGGACTGGCAGCACACAGAGGGGGACCGAGCTGATCCCCAGCTTGTGCATTATG
510 GTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGAGCCGATCCCCAGCTTGCACATTATG
* * *
16862448 CCTCTTCGACTGGCTCATCACCCTGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCA
575 CCTCTTCGACTGGCTCAGCACCCTGCACACTCGTTTCGTCGGTTGACTTATGCATACAGAGTTCA
* *
16862513 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
640 TTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGA
* * * * *
16862550 CAGCAGGATCGATAGCACGCAGGGGGGA-CTGGGTCGATCCTTGGCTTACGCATTCTGCCTCTCT
1 CAGCAAGATCGACAGCACGCAGGGGGGATC-GGGGCGATCCTCGGCTTGCGCATTCTGCCTCTCT
*
16862614 GGCCGGACTGAGCGCCTGTACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCCATG
65 GGCCGG-CTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * * * * *
16862679 TCTAAGCCCCAGCC-AGACTGAA-GGTTGTGGTAGTAGGACTGGCAGCA-GGATTGGCAGCACGC
129 TCTAAGCCCCAACCGA-AC-CAAGGGTTATGGCAGTAAGACCGGCAG-AGGGATTGACAGCACGC
* * * **
16862741 AG-AGGGGATCGGGCTGATCCCTGACTTGCGCATTATGCCTCT-C-CGA-CCGACTGAGTACCCA
191 AGAAGGGGACCAGGCTGATCCCCGACTTGAACATTATGCCTCTCCGCGATCCGACTGAGTACCCA
* * *
16862802 CACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAG-ATACAGAGTTC
256 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
* * **
16862865 ATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGCCAGCACACAGGGGGG
321 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGCCAGCACACAGGGGGG
* * * * * * *
16862930 ACCGGGCCGAT-CCCTGACTTGCGTATTCTGCCTCTCCGGTCGGCT-GAACGCCCGCACGTCCGT
386 ACCAGGCCAATCCCCAG-CTTACGCATTCTGCCTCTCCGATCGGCTGGAA-GCCCGCACGCCCGT
* * *
16862993 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTG
449 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAGGACCGAGGGTTG
* *** *
16863058 TGGCAGCGGGACCGGTAGCATGTAGAGGGGGACCGGGCCGATCCCCGAG-TTGCACATTATGCCT
514 TGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGAGCCGATCCCC-AGCTTGCACATTATGCCT
* * * * *
16863122 CTTCGTCTGGCTCAGCTCCC-GCACACTCTTTTTGTCGGTTGACTTATGCATACGGAGTTCATTC
578 CTTCGACTGGCTCAGCACCCTGCACACTCGTTTCGTCGGTTGACTTATGCATACAGAGTTCATTC
* *
16863186 CCAGTCTCAGATC-GAACCGAACCGAGGGTTGTGA
643 CCAGTCTAAGATCAG-ACCGAACCGAGGGTTGCGA
* * * *
16863220 CTA-TAAGATCGACAGCTCGCAAGGGGGGATCGGGGCGATCCCCGGCTTGTGCATTCTGCCTCTC
1 C-AGCAAGATCGACAGCACGC-AGGGGGGATCGGGGCGATCCTCGGCTTGCGCATTCTGCCTCTC
* * *
16863284 CGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
64 TGGCCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
16863349 TCTAAGC
129 TCTAAGC
16863356 ATACGGAGTT
Statistics
Matches: 699, Mismatches: 93, Indels: 43
0.84 0.11 0.05
Matches are distributed among these distances:
669 1 0.00
670 150 0.21
671 281 0.40
672 14 0.02
673 49 0.07
682 3 0.00
685 22 0.03
686 75 0.11
687 101 0.14
688 3 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (676 bp):
CAGCAAGATCGACAGCACGCAGGGGGGATCGGGGCGATCCTCGGCTTGCGCATTCTGCCTCTCTG
GCCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAACCGAACCAAGGGTTATGGCAGTAAGACCGGCAGAGGGATTGACAGCACGCAGAAG
GGGACCAGGCTGATCCCCGACTTGAACATTATGCCTCTCCGCGATCCGACTGAGTACCCACACGC
TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGCCAGCACACAGGGGGGACCAG
GCCAATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGGAAGCCCGCACGCCCGTTTCATGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAGGACCGAGGGTTGTGGCAGC
GGGACCGGCAGCACACAGAGGGGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTTCGACT
GGCTCAGCACCCTGCACACTCGTTTCGTCGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTA
AGATCAGACCGAACCGAGGGTTGCGA
Found at i:16863357 original size:26 final size:26
Alignment explanation
Indices: 16863328--16863380 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16863318 GTTGGCTTAG
16863328 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
16863354 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
16863380 G
1 G
16863381 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:16864093 original size:26 final size:26
Alignment explanation
Indices: 16864057--16864108 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16864047 TTGACTTAGC
16864057 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
16864083 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
16864109 ATTCGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:16864583 original size:159 final size:158
Alignment explanation
Indices: 16864165--16864584 Score: 398
Period size: 159 Copynumber: 2.6 Consensus size: 158
16864155 GAGGGACTAG
** * * *
16864165 GCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCACACGCCCATTTCATGG
1 GCCGATCCCCGGCTT-CATATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGG
* * * * * * *
16864230 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGC
65 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACTGAAGGTTGCGACAGC
*
16864295 GGGACTGACAGCACGCAGAAGGGGACCGA
130 AGGACTGACAGCACGCAGAAGGGGACCGA
* ** * * * * ** * * **
16864324 GCCGATCCCTGGCTTGTTCATTATGCCTCTTCGGCTGGCTGAATGCCCGCATGCTCGTTTCGCGG
1 GCCGATCCCCGGCTTCAT-ATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGG
* * **
16864389 GTTGACTTAGGCATGCGGAGTTCATTCCCA-ATCTAAG-ATTAGACCAGACTGAAGGTTGCGACA
65 GTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACTGAAGGTTGCGACA
* * * *
16864452 GCAGGA-TCGATAGCACGCA-AGGGGGGTCCGG
128 GCAGGACT-GACAGCACGCAGA-AGGGGACCGA
* * **
16864483 GTCGATCCCCGGCTTACATATTCTGCCTCTCCGGCCGACAGAGCGAACGCACGCTCATTTCATGG
1 GCCGATCCCCGGCTT-CATATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGG
*
16864548 GTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
65 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
16864585 TATACGGGGT
Statistics
Matches: 201, Mismatches: 53, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
158 7 0.03
159 190 0.95
160 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
GCCGATCCCCGGCTTCATATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGG
TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACTGAAGGTTGCGACAGCA
GGACTGACAGCACGCAGAAGGGGACCGA
Found at i:16864952 original size:26 final size:26
Alignment explanation
Indices: 16864923--16864975 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16864913 GTTGACTTAG
16864923 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16864949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16864975 G
1 G
16864976 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16864994 original size:365 final size:355
Alignment explanation
Indices: 16864447--16865167 Score: 851
Period size: 365 Copynumber: 2.0 Consensus size: 355
16864437 CTGAAGGTTG
* * * *
16864447 CGACAGCAGGATCGATAGCACGCAAGGGGGGTCCGGGTCGATCCCCGGCTTACATATTCTGCCTC
1 CGACAGCAGGATCGATAGCACGCAAGGGGGATCCGGGTCGATCCCCAGCTTACACATTATGCCTC
* * *
16864512 TCCGGCCGACAGAGCGAACGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCA
66 TCCGACCGACAGAGCGAACGCACGCTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCA
* *
16864577 TGTCTAAGTATACGGGGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGAGACAGCAGG
131 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGAGACAGCAGG
* * **
16864642 ACCAACAGCA-AGATGGCAGCACGCATGGGGGGACCGTCGATCCCTAGCATGTGCATTCTACCTC
196 ACCAACAGCATACA-GG--G-ACG-AT--CGGG--C-T-GATCCCTAGCATACGCATTCTACCTC
* ** *
16864706 TCCGGTCGGCTGAGCGCCCGCACGCTCA-TTTCATGGCTTGGCTTAGGCATACGGATTTCATTCC
250 TCCGGTCGGCTGAGCACCCGCACGC-CAGTTTCATGGCTTGGAATAGGCATACGGAGTTCATTCC
16864770 ATGTCTAAGCCCCAGCCAGA-CTGAGGGTTGTGGTAGCAGGAC
314 ATGTCTAAGCCCCAGCCAGATC-GAGGGTTGTGGTAGCAGGAC
* * *
16864812 CGACAGCGGGATCGATAGCATGCAGAGGGGGAT-CGGG-CTGATCCCCAGCTTACGCATTATGCC
1 CGACAGCAGGATCGATAGCACGCA-AGGGGGATCCGGGTC-GATCCCCAGCTTACACATTATGCC
* * *** * * * *
16864875 TCTCCGACCGGCTGAGCTCCCGTACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCC
64 TCTCCGACCGACAGAGCGAACGCACGCTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATCC
* * * *
16864940 C-TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGACAGC
129 CAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGAGACAGC
* * * * * *
16865004 AGGATCGACAGCATACAGGGTCGATCGGGCTGATCCCTCGCTTACGCATTTTACCTCTCCGGTCG
193 AGGACCAACAGCATACAGGGACGATCGGGCTGATCCCTAGCATACGCATTCTACCTCTCCGGTCG
** * *
16865069 GCTGAGCACCCGCACGCCAGTTTTGTGGGTTGGAATAGGCATAGGGAGTTCATTCCATGTCTAAG
258 GCTGAGCACCCGCACGCCAGTTTCATGGCTTGGAATAGGCATACGGAGTTCATTCCATGTCTAAG
* *
16865134 CCCTAGCCAGATCGAGGGTTGTGGTAGCGGGAC
323 CCCCAGCCAGATCGAGGGTTGTGGTAGCAGGAC
16865167 C
1 C
16865168 AGCAGCACAT
Statistics
Matches: 305, Mismatches: 45, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
354 2 0.01
355 113 0.37
356 2 0.01
357 1 0.00
359 3 0.01
361 2 0.01
362 2 0.01
363 1 0.00
364 2 0.01
365 168 0.55
366 9 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (355 bp):
CGACAGCAGGATCGATAGCACGCAAGGGGGATCCGGGTCGATCCCCAGCTTACACATTATGCCTC
TCCGACCGACAGAGCGAACGCACGCTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCA
TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGAGACAGCAGG
ACCAACAGCATACAGGGACGATCGGGCTGATCCCTAGCATACGCATTCTACCTCTCCGGTCGGCT
GAGCACCCGCACGCCAGTTTCATGGCTTGGAATAGGCATACGGAGTTCATTCCATGTCTAAGCCC
CAGCCAGATCGAGGGTTGTGGTAGCAGGAC
Found at i:16865474 original size:26 final size:25
Alignment explanation
Indices: 16865425--16865476 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
16865415 GTTGGCTTAG
*
16865425 GCATACGAGTTCATTCCATGTCTAA
1 GCATACGAGTTCATTCCATATCTAA
16865450 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATAC-GAGTTCATT-CCATATCTAA
16865476 G
1 G
16865477 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 15 0.62
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCATATCTAA
Found at i:16866460 original size:159 final size:158
Alignment explanation
Indices: 16866210--16866602 Score: 371
Period size: 159 Copynumber: 2.5 Consensus size: 158
16866200 GGATCAGATC
* * * * * *
16866210 GAGGGTTGCGGTAGCAGGATCGACATCATGCAGGAGGGATTAGGCCGATCCCCGACTTGCGCATT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGAGGGACTAGGCCGATCCCCGACTTACGCATT
* * * * *
16866275 TTACCTCTCCGGTCGGCTGAATGCCCGCACGCCCGTTTCGTGGGTT-AGCTTAGGCATAG-GGAG
66 ATACCTCTCCGGTCAGCTCAACGCCCGAACGCCCGTTTCGTGGGTTGA-CTTAGGCAT-GCGGAG
16866338 TTCATTGCATGTCTAAGCCCTAGTTGGACT
129 TTCATTGCATGTCTAAGCCCTAGTTGGACT
* * * * *
16866368 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTAGGCCGATCCCTGGCTTACGCAT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGCAG-GAGGGACTAGGCCGATCCCCGACTTACGCAT
* * * *
16866433 TATGCCTCTCCGGTCAGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGATTTAGGCATGCGGAGT
65 TATACCTCTCCGGTCAGCTCAACGCCCGAACGCCCGTTTCGTGGGTTGACTTAGGCATGCGGAGT
* ** **
16866498 TCATTCCCA-GTCTAAGATC-AGACCGGACT
130 TCATT-GCATGTCTAAGCCCTAG-TTGGACT
** * * * * * * * * *
16866527 GAGGGTTGCAACAGCAGGATCGCCAACACGCAGGGGGGTCCAGGTCGATCCCCGGCTTGCGCATT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGAGGGACTAGGCCGATCCCCGACTTACGCATT
* *
16866592 CTGCCTCTCCG
66 ATACCTCTCCG
16866603 ACTGACAGAG
Statistics
Matches: 192, Mismatches: 38, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 67 0.35
159 122 0.64
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGAGGGACTAGGCCGATCCCCGACTTACGCATT
ATACCTCTCCGGTCAGCTCAACGCCCGAACGCCCGTTTCGTGGGTTGACTTAGGCATGCGGAGTT
CATTGCATGTCTAAGCCCTAGTTGGACT
Found at i:16867283 original size:26 final size:26
Alignment explanation
Indices: 16867247--16867317 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
16867237 TTTCATGGGT
16867247 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATGTCTAAGCATACGG
*
16867273 AGTTCATTCCATGTCTAAGCATATGG
1 AGTTCATTCCATGTCTAAGCATACGG
16867299 AGTTCATTCCCA-GTCTAAG
1 AGTTCATT-CCATGTCTAAG
16867318 ATTTTGAGCC
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 40 0.93
27 3 0.07
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (26 bp):
AGTTCATTCCATGTCTAAGCATACGG
Found at i:16868836 original size:26 final size:26
Alignment explanation
Indices: 16868806--16868858 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16868796 GTTGACTTAG
16868806 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16868832 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16868858 G
1 G
16868859 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16869706 original size:26 final size:26
Alignment explanation
Indices: 16869676--16869728 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16869666 GTTGACTTAG
*
16869676 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16869702 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16869728 G
1 G
16869729 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16869881 original size:870 final size:851
Alignment explanation
Indices: 16867933--16870232 Score: 2537
Period size: 870 Copynumber: 2.7 Consensus size: 851
16867923 TTTGGTCGAC
* * * *
16867933 TGAGCGCCTGCACGCTCATTTCGTAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* *
16867998 TATGGAGTTCATTCCCAGTC--------TCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACG
66 TACGGAGTTCATTCCCAGTCTAAGATGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACG
* * * *
16868055 CAGAGGGGACTGGGCCGATCCCCAGCTTGCGTATTCTGCCTCTCCGGCCGGCTGAGCACCCGCAC
131 CAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCAC
* * ** * *
16868120 GCCCATTTTGTGCATTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAG-TCAGACCG
196 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCG
* * *
16868184 AGGGTTGTGGCAGC----CG---G-ACC-----GA-GGGTCGATCCCCGGCTTGCGTATTCTACC
260 AGGGTTGTGGCAGCGAGACGATAGCACCGAGGGGACGGGTCGATCCCCGGCTTGCGCATTATGCC
* * ** * * *
16868235 TCTGC-AGTCGACTCAATGCCCGGACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
325 TCTTCGA-TCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * **
16868299 CCCAGTCTAAGATCAGATCGGACCGAGGGTTACTGTAGTAGGATCGACAACACGTAAAGGGGATC
389 CCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATC
* * * * * * * * *
16868364 AAGTCGATTCCCGACTCGCACATTCTGCCACTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGT
454 GAGCCGA-TCCCGACTTGCACATTCTACCTCTCCGCT-GGTTGAGCGCCCACACGCTCGTTTCGT
* *
16868429 GGGTTGGCTTAAGCATATAGAGTTCATTCCATGT-TAAGCATATAGAGTTCATTCCCAGTCTAAG
517 GGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAG
* * *
16868493 ATCGAACGGACCGAGGGTTGTGGCAGCAGGGCCAGCAGCTGGATCGACAGCACGCAGGGGGGATC
582 ATCGAACGGACAGAAGGTTGCGGCAGCAGGG-CAGCA---GGAT---CAGCACGCAGGGGGGATC
* * *
16868558 AGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCTCCCGCACGCTCGTTTTAT
640 AGGCCGATCCCAGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCAT
* *
16868623 GGGTTGGCTTAGGCATACAGAGTTCATTCCACATCTAAGCCCCATCCGGACCGAGGGTTGTGGCA
705 GGGTTGGCTTAGGCATACAGAGTTCACTCCACATCTAAGCCCCAACCGGACCGAGGGTTGTGGCA
* * * * ** *
16868688 GCAGGATCGACAGCGGGATCGGCAGCACGTAGAGGGGGACTGGGTTGATCCCTGACTTATGCATT
770 GCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGACTAGACTGATCCCTGAATTATGCATT
*
16868753 ATGCCTTTCCGATCGGT
835 ATGCCTTTCCGATCAGT
* *
16868770 TGAGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * * *
16868835 TACGGAGTTCATTCCTAGTCTAAGATCGGATCGAATCAAGGGTTACGACAGTAGGATTCG-TAGC
66 TACGGAGTTCATTCCCAGTCTAAGAT--GATCGGATCGAGGGTTGCGACAGCAGGA-TCGACAGC
* * * * * * * * *
16868899 ACGTAGGGGGGACCAGGCCAATCCTCGACTTACGCATTCTGCCTCTCCAGCCAGCTGAGCACACG
128 ACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG
* * * *
16868964 CATGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCTAGCTGGAC
193 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAC
* *
16869029 CGAGGGTTGTGGCAGCGAGATCGATAGCACGCCGAGAGGGATCGGGTCGATCCCCAGCTTACGCA
258 CGAGGGTTGTGGCAGCGAGA-CGATAGCA--CCGAG-GGGA-CGGGTCGATCCCCGGCTTGCGCA
* * *
16869094 TTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAG
318 TTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAG
* ** * * *
16869159 TTCATTCCTAGTGGAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACACAGGG
383 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGG
* * * * * *
16869224 GGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACTGGTTGAACGCCTACATGCTCG
448 GGGATCGAGCCGATCCC-GACTTGCACATTCTACCTCTCCG-CTGGTTGAGCGCCCACACGCTCG
*
16869289 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAG
511 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAG
* * * *
16869354 TCCAAGATCAGATCGGACAGAAGGTTGCGGCAGC-GGG-ATCA-G-T-AGCACGTAGGGGAGGAT
576 TCTAAGATC-GAACGGACAGAAGGTTGCGGCAGCAGGGCAGCAGGATCAGCACGCAGGGG-GGAT
** * *
16869414 TGGGCCGATCCCCGGCTTACGCATTCTGCCTCT-TCGGCCGACTGAG-TGCCCGCACGCTTGTTT
639 CAGGCCGATCCCAGGCTTACGCATTCTGCCTCTCT-GGCCGACTGAGCT-CCCGCACGCTCGTTT
* **
16869477 CATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTG
702 CATGGGTTGGCTTAGGCATACAGAGTTCACTCCACATCTAAGCCCCAACCGGACCGAGGGTTGTG
* * * *
16869542 GTAGCAGGACCGGCAGCGGGATCGATAGCATGCAGAGGGGGA-TCAGACTGATCCACGGCTTGCA
767 GCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGACT-AGACTGAT-C-C--C-TG-A
* *
16869606 TATTATGCCTCTCCGATCGGCCTTTTCGATCAGT
825 -ATTATGCAT-T---AT--GCCTTTCCGATCAGT
* *
16869640 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* *
16869705 TACGAAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCA
66 TACGGAGTTCATTCCCAGTCTAAGA-T-GATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCA
* * ** **
16869770 CGCAGAGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGGTGGGCTGAGTGCCCGC
129 CGCAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGC
* *
16869835 ACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
194 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACC
* * *
16869900 GAGGGTTGTGGCAGTGAGACCGATAGCAATCAGAGGGGGAGCGGG-CTGATCCACGGCTTGCGCA
259 GAGGGTTGTGGCAGCGAGA-CGATAGC-A-CCGA-GGGGA-CGGGTC-GATCCCCGGCTTGCGCA
** * * * *
16869964 TTATGCCTCTTCGGCCGGCTCAGCGCCCGCATGCTCATTTCTTGGGTTGACTTATGCATAGGGAG
318 TTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAG
* ** * *
16870029 TTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGTGGCAGCAGGATCAACAGCACGCAGAG
383 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG-G
* * * * *
16870094 AGAGACCGAGCCGATCCCCGACTTGCACATTCTACCTCTCTGGTTGGTTGAGCGCCCACACGCTC
447 GGGGATCGAGCCGAT-CCCGACTTGCACATTCTACCTCTC-CGCTGGTTGAGCGCCCACACGCTC
** * * *
16870159 GTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCATACAGAGTTCATTCCCA
510 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCA
16870224 GTCTAAGAT
575 GTCTAAGAT
16870233 TTTGAGCCAT
Statistics
Matches: 1207, Mismatches: 195, Indels: 88
0.81 0.13 0.06
Matches are distributed among these distances:
837 77 0.06
847 145 0.12
848 4 0.00
852 2 0.00
855 1 0.00
856 15 0.01
857 156 0.13
858 3 0.00
859 1 0.00
860 1 0.00
861 2 0.00
862 2 0.00
863 1 0.00
864 9 0.01
865 8 0.01
866 203 0.17
867 36 0.03
868 22 0.02
869 4 0.00
870 392 0.32
871 119 0.10
872 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (851 bp):
TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACG
CAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCAC
GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGA
GGGTTGTGGCAGCGAGACGATAGCACCGAGGGGACGGGTCGATCCCCGGCTTGCGCATTATGCCT
CTTCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCGA
GCCGATCCCGACTTGCACATTCTACCTCTCCGCTGGTTGAGCGCCCACACGCTCGTTTCGTGGGT
TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCG
AACGGACAGAAGGTTGCGGCAGCAGGGCAGCAGGATCAGCACGCAGGGGGGATCAGGCCGATCCC
AGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTA
GGCATACAGAGTTCACTCCACATCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGAC
AGCGGGATCGACAGCACGCAGAGGGGGACTAGACTGATCCCTGAATTATGCATTATGCCTTTCCG
ATCAGT
Found at i:16870065 original size:159 final size:157
Alignment explanation
Indices: 16869710--16870204 Score: 419
Period size: 159 Copynumber: 3.1 Consensus size: 157
16869700 AAGCATACGA
* * * *
16869710 AGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGCAGGACCGACAGCAAGCAG
* * ** * *
16869775 AGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGGTGGGCTGAGTGCCCGCACGCC
65 AGGGGACCGGGTCGATCCACGGCTTGCGCATTATACCTCTCCGGCCGGCTCAGCGCCCGCACGCC
* *
16869840 TGTTTCGTGGGTTGGCTTAGGCATAGGG
130 TATTTCGTGGGTTGACTTAGGCATAGGG
** * * * *
16869868 AGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAG-TGAGACCGATAGCAAT
1 AGTTCATTCCCA-GTCTAAG-ATCAGATCGGA-CGAGGGTTGTGGCAGCAG-GACCGACAGCAAG
* * *
16869930 CAGAGGGGGAGCGGG-CTGATCCACGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGC
62 CAGA-GGGGACCGGGTC-GATCCACGGCTTGCGCATTATACCTCTCCGGCCGGCTCAGCGCCCGC
* * *
16869994 ATG-CTCATTTCTTGGGTTGACTTATGCATAGGG
125 ACGCCT-ATTTCGTGGGTTGACTTAGGCATAGGG
* * * *
16870027 AGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGTGGCAGCAGGATCAACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGAC-GAGGGTTGTGGCAGCAGGACCGACAGCAAGCAG
* * * * * * * * ** * * *
16870092 AGAGAGACCGAGCCGATCCCCGACTTGCACATTCTACCTCTCTGGTTGGTTGAGCGCCCACACGC
65 AG-GGGACCGGGTCGATCCACGGCTTGCGCATTATACCTCTCCGGCCGGCTCAGCGCCCGCACGC
* * *
16870157 TCGT-TTT-ATGGGTTGGCTTAGGCATACGG
129 -C-TATTTCGTGGGTTGACTTAGGCATAGGG
**
16870186 AGTTCATTCCTTGTCTAAG
1 AGTTCATTCCCAGTCTAAG
16870205 CATACAGAGT
Statistics
Matches: 265, Mismatches: 57, Indels: 29
0.75 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 54 0.20
159 197 0.74
160 8 0.03
161 1 0.00
162 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACGAGGGTTGTGGCAGCAGGACCGACAGCAAGCAGA
GGGGACCGGGTCGATCCACGGCTTGCGCATTATACCTCTCCGGCCGGCTCAGCGCCCGCACGCCT
ATTTCGTGGGTTGACTTAGGCATAGGG
Found at i:16870214 original size:26 final size:26
Alignment explanation
Indices: 16870178--16870230 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16870168 GTTGGCTTAG
* **
16870178 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16870204 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16870230 G
1 G
16870231 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16871186 original size:159 final size:157
Alignment explanation
Indices: 16870804--16871195 Score: 393
Period size: 159 Copynumber: 2.5 Consensus size: 157
16870794 CCTAATCTAA
* *
16870804 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
16870869 GCACGTGGGGAAGACTAGGCCAATCCCTGACTTGCGCATTTTGCCTCTCTGGTCGGTTGAGTGCC
66 GCACGAGGGG-AGACGAGGCCAATCCCTGACTTGCGCATTATGCCTCTCTGGTCGGCTCAATGCC
* * *
16870934 CGCACACCCGTTTCATGGGTTGGCTTAG
130 CACACACCCATTTCATGGGTTGACTTAG
** ** * * *
16870962 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAAGGTTGTAGCAGC-GAGA-CA
1 GCATACAGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCAG-GATC-
* *
16871023 GACAGCATGCAGAGGGG-GATCGA-GCCGATCCCTGGCTTGCGCATTATGCCTCT-TCGGTCGGC
62 GACAGCA--C-GAGGGGAGA-CGAGGCCAATCCCTGACTTGCGCATTATGCCTCTCT-GGTCGGC
** * *
16871085 TCAATGCCCACATGCTCATTTCGTGGGTTGACTTAG
122 TCAATGCCCACACACCCATTTCATGGGTTGACTTAG
* *
16871121 GCATACAGAGTTCATTCCCAGTCTAAGTTCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* *
16871186 GTACGCGGGG
66 GCACGAGGGG
16871196 GGCGACCAGG
Statistics
Matches: 187, Mismatches: 34, Indels: 28
0.75 0.14 0.11
Matches are distributed among these distances:
156 5 0.03
157 5 0.03
158 52 0.28
159 112 0.60
160 8 0.04
161 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGAGGGGAGACGAGGCCAATCCCTGACTTGCGCATTATGCCTCTCTGGTCGGCTCAATGCCC
ACACACCCATTTCATGGGTTGACTTAG
Found at i:16871835 original size:26 final size:26
Alignment explanation
Indices: 16871805--16871857 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16871795 GTTGACTTAG
16871805 GCATATAG-AGTTCATCCCCAATCTAA
1 GCATA-AGAAGTTCATCCCCAATCTAA
* *
16871831 GCATACGAAGTTCATTCCCAATCTAA
1 GCATAAGAAGTTCATCCCCAATCTAA
16871857 G
1 G
16871858 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAATCTAA
Found at i:16872213 original size:159 final size:158
Alignment explanation
Indices: 16871831--16872216 Score: 427
Period size: 159 Copynumber: 2.4 Consensus size: 158
16871821 CCCAATCTAA
* * *
16871831 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
16871896 GCACGTAGGGAAGACTGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCACC
66 GCACGCAGGGAAGACTGAGCCAATCCCCAGCTTGCGCATTATGCCTCTACGATCGGCTCAACACC
* *
16871961 CGCACGCCCATTTCGTGGGTTGGCTTAG
131 CACACGCCCATTTCGTGGGTTGACTTAG
* * * ** * *
16871989 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGA-CCGGACTGAGGGTTGTGGCAGCAGGATCGA
** * * * *
16872052 CAGCACGCAGAGGGGGA-TCGAGCCGATCCCTAGCTTGCGCATTATTCCTCTACGGTCGGCTCAA
64 CAGCACGCAG-GGAAGACT-GAGCCAATCCCCAGCTTGCGCATTATGCCTCTACGATCGGCTCAA
* * *
16872116 CGCCCACACGCTCGTTTCGTGGGTTGACTTAG
127 CACCCACACGCCCATTTCGTGGGTTGACTTAG
* * *
16872148 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
16872213 GCAC
66 GCAC
16872217 ACGGGGGGCG
Statistics
Matches: 183, Mismatches: 39, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
157 5 0.03
158 56 0.31
159 117 0.64
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGAAGACTGAGCCAATCCCCAGCTTGCGCATTATGCCTCTACGATCGGCTCAACACC
CACACGCCCATTTCGTGGGTTGACTTAG
Found at i:16873349 original size:159 final size:157
Alignment explanation
Indices: 16872857--16873349 Score: 478
Period size: 158 Copynumber: 3.1 Consensus size: 157
16872847 CCCAATCTAA
* *
16872857 GCATATGGAGTTCATTTCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGCAGTAGGATCG-GT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGCAGTAGGATCGAG-
* * * *
16872921 AGCACGTAGGGGAGACCGGGCCAATCCCCGGCTT--ATGCATTCTGCCTCTCCGGTCGGCTGAGC
65 AGCACGTAAGGGAGATCGGGCCGATCCCCGGCTTGCAT--ATTCTGCCTCTCCGGTCGGCTAAGC
*
16872984 GCCCGCACGCCCATTTCGTGGGTTGGCTTAG
128 G-CCGCACGCTCATTTCGTGGGTTGGCTTAG
** * * * * *
16873015 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGTGGGACCGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGGGTTGTGGCAGTAGGATCGAG
* * * * ** * * *
16873079 AGCACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGG-CGGCTCAAAA
65 AGCACGTA-AGGGAGATCGGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCGGTCGGCT--AAG
* * * *
16873143 C-CCACACACTCATTTCGTGGGTTGACTTAA
127 CGCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
16873173 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCGACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGCAGTAGGATCGA-G
* * * * *
16873238 A-CACGTAAGGTGCGATCGGGTCGGTCCCCGGCTTGCATATTCTACCCCTCCGGTCGGCTAAGCG
65 AGCACGTAAGG-GAGATCGGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCGGTCGGCTAAGCG
*
16873302 CCGGCACGCTCATTTCATGGGTTGGCTTAG
129 CC-GCACGCTCATTTCGTGGGTTGGCTTAG
16873332 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16873350 ATGTTTAAGC
Statistics
Matches: 263, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 9 0.03
158 171 0.65
159 81 0.31
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGCAGTAGGATCGAGA
GCACGTAAGGGAGATCGGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCGGTCGGCTAAGCGCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16873384 original size:26 final size:26
Alignment explanation
Indices: 16873332--16873384 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16873322 GTTGGCTTAG
*
16873332 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16873358 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16873384 G
1 G
16873385 ATCAAATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16873714 original size:26 final size:26
Alignment explanation
Indices: 16873678--16873730 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16873668 GTTGACTTAG
16873678 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* * * *
16873704 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
16873730 G
1 G
16873731 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:16873909 original size:29 final size:29
Alignment explanation
Indices: 16873863--16873922 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
16873853 TTGGCTTAGG
16873863 CATAGGGAGTTCACTCCATGTCTAAGCCC
1 CATAGGGAGTTCACTCCATGTCTAAGCCC
*
16873892 CATAGGGAGTTCATTCCATGTCTAAGCCC
1 CATAGGGAGTTCACTCCATGTCTAAGCCC
16873921 CA
1 CA
16873923 GTCGGATCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (29 bp):
CATAGGGAGTTCACTCCATGTCTAAGCCC
Found at i:16874244 original size:26 final size:26
Alignment explanation
Indices: 16874207--16874259 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16874197 GTTGGCTTAG
*
16874207 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
16874233 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16874259 G
1 G
16874260 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16874447 original size:26 final size:26
Alignment explanation
Indices: 16874411--16874502 Score: 157
Period size: 26 Copynumber: 3.5 Consensus size: 26
16874401 TTGTGGGTTG
16874411 ATTCCCAGTCTAAGCATACGGAGTTC
1 ATTCCCAGTCTAAGCATACGGAGTTC
* *
16874437 ATTCCCAGTCTAAGTATACGGAGTTA
1 ATTCCCAGTCTAAGCATACGGAGTTC
*
16874463 ATCCCCAGTCTAAGCATACGGAGTTC
1 ATTCCCAGTCTAAGCATACGGAGTTC
16874489 ATTCCCAGTCTAAG
1 ATTCCCAGTCTAAG
16874503 ATTGAATCGG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 60 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (26 bp):
ATTCCCAGTCTAAGCATACGGAGTTC
Found at i:16874830 original size:26 final size:26
Alignment explanation
Indices: 16874793--16874845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16874783 GTTGGCTTAG
* *
16874793 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16874819 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16874845 G
1 G
16874846 AGCTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16874934 original size:11 final size:11
Alignment explanation
Indices: 16874915--16874945 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
16874905 CCTGAGGCAC
16874915 CATCACCGGAG
1 CATCACCGGAG
*
16874926 CATCGCCGGAG
1 CATCACCGGAG
16874937 CATCACCGG
1 CATCACCGG
16874946 TGAGCCTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.23, C:0.39, G:0.29, T:0.10
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:16876365 original size:26 final size:26
Alignment explanation
Indices: 16876336--16876388 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16876326 GTTGACTTAG
*
16876336 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16876362 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16876388 G
1 G
16876389 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16877067 original size:26 final size:26
Alignment explanation
Indices: 16877017--16877069 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16877007 GTTGGCTTAG
*
16877017 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
16877043 GCATACGGAGTTCGTTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16877069 G
1 G
16877070 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16877414 original size:26 final size:26
Alignment explanation
Indices: 16877385--16877434 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16877375 GTTGGCTTAG
*
16877385 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16877411 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
16877435 GAGATTGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16877469 original size:707 final size:681
Alignment explanation
Indices: 16876311--16877627 Score: 1521
Period size: 707 Copynumber: 1.9 Consensus size: 681
16876301 AAGCGCCCGT
* *
16876311 ACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTTGTTCCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * * *
16876376 TTCCCAATCTAAGATTGAACCGGACCGGAGGTTGCGGTAGTAGGATCGGTAGCACGCAAGCGGGA
66 TTCCCAATCTAAGATCGAACCGGACAGGAGGTTGCGGTAGCAGGACCGGTAGCACGCAAGCGGGA
* * *
16876441 TCGGCCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCCCGTTTC
131 TCGGCCCGATCCCTGGCTCGCGCATTCTACCTCTCCGATCGACTGAGCACCCGCACGCCCATTTC
* * * ** *
16876506 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCTCCAGTCGGACCGAGGGTTGTGG
196 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGGTTGTGG
* * * *
16876571 TAGCAGATCGGCAGCACGCAGAGGGGGACTGAACCGATCCCCGACTTATGCATTCTGCCTCTCCG
261 CAGCAGATCGGCAGCACACAGAGGGGGACTGAACCGATCCCCGACTTATGCACTATGCCTCTCCG
* * *
16876636 ATCGACTGAGCGCCCGCAATCCCGTTTCATGGCTTAGCTTTGGCATACAGAGTTCATTCCATTTC
326 ATCGACTGAGCGCCCGCAATCCCGTTTCATGGCTTAGCTTAGGCATACAGAGTTCATCCCATGTC
* * * **
16876701 TACGCAAACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAAGGTTACGGTAGCAGGATCG
391 TAAGCAAACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTACGACAGCAGGATCG
* * * * *
16876766 GCAGCACACAAGCATGATTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGT
456 ACAGCACACAAGCAGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * * *
16876831 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
521 GCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
** *
16876896 TGGACTGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAACCGATCCCCGGCTT
586 CAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAACCGATCCCCGGCTT
16876961 GTGCATTCTGCCTCTTCGACCGACAGCACGC
651 GTGCATTCTGCCTCTTCGACCGACAGCACGC
* * *
16876992 ACGCTTGTTCCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTC
1 ACGCTTGTTCCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACGGAGTTC
* * *
16877056 GTTCCCAATCTAAGATCGGACCGGACA-GAGGGTTGTGGTAGCAGGACCAGCAGTAGGATCGACA
65 ATTCCCAATCTAAGATCGAACCGGACAGGA-GGTTGCGGTAGCAGGACC-G--GTA-G--C-AC-
* * ** * * * **
16877120 GCACGTAGGGTGGGATCGGGCCGAT-CCTCGGCTCGCGCATTCTACCTCTTTGGTTGGCTGAGTG
121 GCA---A--GCGGGATCGGCCCGATCCCT-GGCTCGCGCATTCTACCTCTCCGATCGACTGAGCA
* *
16877184 CCCGCACGCGCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
180 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
* ** *
16877249 GGACAGAGGGTTGTGGCAGCAGGATCGGTAGCGGGATCGACAGCACACAGAGGGGGATTGGGCTG
245 GGACAGAGGGTTGTGGCAGCA-GA----T--C--G---G-CAGCACACAGAGGGGGACTGAACCG
* * * ** * * *
16877314 ATCCCCGGCTTGTGTACTATGCCTCTCCGATCGGTTGAGCGCCCGC-ATGCTCGTTTCGTGGGTT
297 ATCCCCGACTTATGCACTATGCCTCTCCGATCGACTGAGCGCCCGCAAT-CCCGTTTCATGGCTT
* ** * * **
16877378 GGCTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTGAGATTG
361 AGCTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCA
* * ** ** * **
16877442 GATCAGACCG-AGTGTTGTGACAGCAGGATCGACAGCATGCAGGGGGGACTGGGCCGATCCCCGA
425 AACCAGACCGAAG-GTTACGACAGCAGGATCGACAGCACACAAGCAGGACTGGGCCGATCCCCGA
* * *
16877506 CTTTCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGC
489 CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGC
16877571 ATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGA
554 ATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGA
16877628 CTGGTAACAC
Statistics
Matches: 517, Mismatches: 87, Indels: 38
0.81 0.14 0.06
Matches are distributed among these distances:
680 5 0.01
681 93 0.18
682 1 0.00
684 3 0.01
685 1 0.00
687 1 0.00
688 2 0.00
689 3 0.01
692 1 0.00
693 3 0.01
694 116 0.22
695 2 0.00
699 1 0.00
701 1 0.00
703 1 0.00
706 5 0.01
707 275 0.53
708 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (681 bp):
ACGCTTGTTCCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAATCTAAGATCGAACCGGACAGGAGGTTGCGGTAGCAGGACCGGTAGCACGCAAGCGGGA
TCGGCCCGATCCCTGGCTCGCGCATTCTACCTCTCCGATCGACTGAGCACCCGCACGCCCATTTC
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGGTTGTGG
CAGCAGATCGGCAGCACACAGAGGGGGACTGAACCGATCCCCGACTTATGCACTATGCCTCTCCG
ATCGACTGAGCGCCCGCAATCCCGTTTCATGGCTTAGCTTAGGCATACAGAGTTCATCCCATGTC
TAAGCAAACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTACGACAGCAGGATCG
ACAGCACACAAGCAGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGC
GCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
CAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAACCGATCCCCGGCTT
GTGCATTCTGCCTCTTCGACCGACAGCACGC
Found at i:16877910 original size:157 final size:156
Alignment explanation
Indices: 16877411--16877901 Score: 479
Period size: 158 Copynumber: 3.1 Consensus size: 156
16877401 CCCAGTCTAA
* * * *
16877411 GCATACGGAGTTCATTCCCAGTCTGAGATTGGATCAGACCGAGTGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGAT-AGACCGAGGGTTGTG-GAGCAGGATCGACA
* * * * * *
16877476 GCATGCAGGGGGGACTGGGCCGATCCCCGACTTTCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
64 GCACGTAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAACGCC
* * *
16877541 CGCACACCCATTTCATGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* ***** * * *
16877569 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACTGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATAGGA-TAGACCGAGGGTTGTGG-AGCAGGA-TCG-
* * * * *
16877633 A-A-CACGTAGAGGGGGA-TGGGCCGATCCTCGGCTTGCGCATTAC-GCCTTTCTGACTGGCTCA
61 ACAGCACGTAG-GGGGGACTGGGCCGATCCCCGGCTTGCGCATT-CTGCCTCTCCGACCGGCTGA
* * * * *
16877694 ACACCCGAACGTTCATTTTGTGGGTTGACTTAG
124 ACGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
16877727 GCATACGGAGTTCATTCCCAGTCTAAGATAGGATAGGACCGAGGGTTGCGGAGTAGGATCGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGATA-GACCGAGGGTTGTGGAGCAGGATCGACAG
** * * ** *
16877792 CACGTAGGGGGGACTGGGTTGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGATTGCCT
65 CACGTAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAACGCCC
*
16877857 GCACGCTCGTTTCGTGGGTTGGCTTAG
130 GCACGCTCATTTCGTGGGTTGGCTTAG
16877884 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16877902 ATGCCTAAGC
Statistics
Matches: 260, Mismatches: 60, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
155 1 0.00
156 10 0.04
157 92 0.35
158 143 0.55
159 13 0.05
160 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGGATAGACCGAGGGTTGTGGAGCAGGATCGACAGC
ACGTAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAACGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16878547 original size:158 final size:160
Alignment explanation
Indices: 16878155--16878593 Score: 435
Period size: 159 Copynumber: 2.8 Consensus size: 160
16878145 AGGGTTACGG
* * * *
16878155 CAGCATGCAGG-GGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCAACCGGTTGAGA
1 CAGCATGCAGGAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGA
* * * * * * * *
16878219 GCCCACACACCCGTTTTGTGGGTTGGCATAAGCTTAGGGAGTTCATT-CCATGTCTAAGCCCTAG
66 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCATGACTAAGACCTAG
* * *
16878283 CCGAACTGAGGGTTGTGGCAGCGGGACCGA
131 CCGAACCGAGGGTTGTGGCAACAGGACCGA
* * * * * * * *
16878313 CAGCACGCA-AAGAGAGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAG
1 CAGCATGCAGGAG-GGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAG
* * * * * *
16878377 TGCCCGAACGCTCATTTTGTGGGTTGACTTAAGCGTACGGAGTTCATTCCCA-GACTAAGATC-A
65 AGCCCGCACGCTCGTTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCATGACTAAGACCTA
* * *
16878440 GACTGGACCGAGGGTTGTGGCAACAGGATC-A
130 G-CCGAACCGAGGGTTGTGGCAACAGGACCGA
*
16878471 CAGCATGCAGGAGGGGATCGGGTCGGTCCCC-AGCTTGCGCATTCTGCCTCTCCGATCGGTTGAG
1 CAGCATGCAGGAGGGGATCGGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGATCGGTTGAG
* * * * * * *
16878535 GGCCCGCACGCTCGTTCTATGAGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG
65 AGCCCGCACGCTCGTTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCATGACTAAG
16878594 CATACGGAGT
Statistics
Matches: 223, Mismatches: 51, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 106 0.48
159 110 0.49
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
CAGCATGCAGGAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGA
GCCCGCACGCTCGTTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCATGACTAAGACCTAG
CCGAACCGAGGGTTGTGGCAACAGGACCGA
Found at i:16878596 original size:26 final size:26
Alignment explanation
Indices: 16878567--16878619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16878557 GTTGGCTTAG
16878567 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16878593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16878619 G
1 G
16878620 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16878818 original size:196 final size:196
Alignment explanation
Indices: 16878465--16878819 Score: 502
Period size: 196 Copynumber: 1.8 Consensus size: 196
16878455 TGTGGCAACA
* * * * * * *
16878465 GGATCACAGCATGCAGGAGGGGATCGGGTCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGG
1 GGATCACAGCACGCAGGAGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTACCACTCCAACCGG
* *
16878530 TTGAGGGCCCGCACGCTCGTTCTATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
66 TTGAGCGCCCGCACGCTCGTTCTATGAGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
*
16878595 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGCTTGCGACAACAGGACCAACGGC
131 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGCTTGCGACAACAGGACCAACGGC
16878660 C
196 C
*
16878661 GGATCGACAGCACGCAGG-GGGGATCGAG-CAGATCCTCAGCTTGCGCATTCTACCACTCCAACC
1 GGATC-ACAGCACGCAGGAGGGGATCGAGTC-GATCCCCAGCTTGCGCATTCTACCACTCCAACC
* * * *
16878724 GGTTGAGCGCCCGCACGCTCGTT-TCGTGGGTTGACTTAGTCATACGGAGTTCATCTCCA-GTCT
64 GGTTGAGCGCCCGCACGCTCGTTCT-ATGAGTTGACTTAGGCATACAGAGTTCAT-TCCATGTCT
*
16878787 AAGCATACAGAGTTCATTCCCAGTTTAAGATCA
127 AAGCATACAGAGTTCATTCCCAGTCTAAGATCA
16878820 AACTGGATCG
Statistics
Matches: 139, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
195 2 0.01
196 122 0.88
197 15 0.11
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (196 bp):
GGATCACAGCACGCAGGAGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTACCACTCCAACCGG
TTGAGCGCCCGCACGCTCGTTCTATGAGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGCTTGCGACAACAGGACCAACGGC
C
Found at i:16879146 original size:26 final size:26
Alignment explanation
Indices: 16879110--16879162 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16879100 GTTGGCTTAG
*
16879110 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16879136 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16879162 G
1 G
16879163 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16879857 original size:26 final size:26
Alignment explanation
Indices: 16879823--16879873 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16879813 TGAATTAGGT
16879823 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
* * *
16879849 ATACGGAGTTCATTCCCATTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
16879874 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:16880209 original size:159 final size:156
Alignment explanation
Indices: 16879847--16880347 Score: 400
Period size: 159 Copynumber: 3.2 Consensus size: 156
16879837 CCCAGTCTAA
* *
16879847 GCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATC-GACCGGACCGATGGTTGCGGCAGCAGGATCGACA
* * *
16879912 GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCACC
64 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGACTCAGCACC
* *
16879977 CGCACGCCCATTTTGTGGGTTGGCTTAG
129 CGCACGCCCATTTCGTGGGTTGACTTAG
* * * ** * * *
16880005 GCATAGGGATTTTATTCCAGGTCTAAG-TCGCAGCTAGATCGATGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCG-A-CCGGACCGATGGTTGCGGCAGCAGGATC-GA
* * * * * * *
16880068 CAGCATGTAGAGGGGGATC-GAGCTGATCCCCGACTTGCGCATTATGGCTTTTCGATCGGCTCAG
62 CAGCACGCAG-GGGGGACCAG-GCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGACTCAG
** * * *
16880132 TGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
125 CACCCGCACGCCCATTTCGTGGGTTGACTTAG
* **
16880164 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAATGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATC-GACCGGACCGATGGTTGCGGCAGCAGGATCGACA
** * * * * * * * * * ** * *
16880229 GCACGTTGGGGGGATCGGGTCGGTCCCCG-TTTGCGCTTTCTGCCTCTCCGACCGGTTGAGCGCC
64 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGACTCAGCACC
* * * * * *
16880293 CTCATGCTCGTTTTGTGGGTTGGCTTAG
129 CGCACGCCCATTTCGTGGGTTGACTTAG
16880321 GCATACGG-GTTTCATTCCATGTCTAAG
1 GCATACGGAG-TTCATTCCA-GTCTAAG
16880348 CATATGAAGT
Statistics
Matches: 272, Mismatches: 58, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 78 0.29
158 66 0.24
159 119 0.44
160 5 0.02
161 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGACCGGACCGATGGTTGCGGCAGCAGGATCGACAGC
ACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGACTCAGCACCCG
CACGCCCATTTCGTGGGTTGACTTAG
Found at i:16880671 original size:26 final size:26
Alignment explanation
Indices: 16880641--16880693 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16880631 GTTGACTTAG
* *
16880641 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
* *
16880667 GCATACAGACTTCATTCCTAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
16880693 G
1 G
16880694 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGACTTCATCCCCAGTCTAA
Found at i:16887639 original size:26 final size:26
Alignment explanation
Indices: 16887601--16887653 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16887591 CCGGTCTGAT
16887601 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16887627 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
16887653 C
1 C
16887654 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16888422 original size:26 final size:26
Alignment explanation
Indices: 16888371--16888423 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16888361 TCGATCTGAT
*
16888371 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16888397 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16888423 C
1 C
16888424 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16888631 original size:26 final size:26
Alignment explanation
Indices: 16888580--16888632 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16888570 CCGATCTAAT
*
16888580 CTTAGACTGGGAACGAACTTCATATG
1 CTTAGACTGGGAACGAACTACATATG
* *
16888606 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAACGAACTACATATG
16888632 C
1 C
16888633 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTACATATG
Found at i:16889506 original size:15 final size:14
Alignment explanation
Indices: 16889476--16889503 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
16889466 AAAACTCGAA
16889476 GTGGAGAAGATTTT
1 GTGGAGAAGATTTT
16889490 GTGGAGAAGATTTT
1 GTGGAGAAGATTTT
16889504 TGTTGGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36
Consensus pattern (14 bp):
GTGGAGAAGATTTT
Found at i:16890016 original size:26 final size:26
Alignment explanation
Indices: 16889980--16890032 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16889970 CTGGTCTGAT
*
16889980 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATAAACTCCGTATG
*
16890006 CTTAGATTGGGGATAAACTCCGTATG
1 CTTAGATTGGGAATAAACTCCGTATG
16890032 C
1 C
16890033 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATAAACTCCGTATG
Found at i:16891128 original size:159 final size:157
Alignment explanation
Indices: 16890726--16891760 Score: 891
Period size: 159 Copynumber: 6.5 Consensus size: 157
16890716 AACTCCGTAT
** * *
16890726 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
16890791 TCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGTGTGCTGTCGATCC
66 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
16890856 TGTTGCCACAACCCTCAATCTGATCTGA
131 CGCTGCCACAACCCTCGATCTG-GCTGA
* * * * * * * * * * *
16890884 TCTTGGAC-TAGGAAAGAACACCGTATGCATAAGTCAACCCACGAAACGAGCCTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* ** * * * * * *
16890948 GTCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTCTGCCTCTGCGTGCTG-CTGG
65 GCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC-CCCCCTGCGTGCTGTC-GA
* * *
16891012 TCCCACTGCCACAACCATCGATCTGGCTAGG
128 TCCCGCTGCCACAACCCTCGATCTGGCT-GA
* * * * *
16891043 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
16891108 CCGACCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
66 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * *
16891173 TGCTGCCGCAACCCT-AAGTCCGATCTGA
131 CGCTGCCACAACCCTCGA-TCTG-GCTGA
* * * * * * * *
16891201 TCTTAGAC-TGGAAATGAACTCCATATGCATAAGTCAAACCATGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * **
16891265 GCC-AGTCGAAGAGGCATAATGTGCAAGCTGGGGATCGACTCGGTCCCCCTCTGCATGCTACCGA
65 GCCGA-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGA
* *
16891329 TCCCGCTACCACAACCCTCGATCTGGCTGGG
128 TCCCGCTGCCACAACCCTCGATCTGGCT-GA
* * * *
16891360 GCTTAGACATGGAATGAACTCCCTATACCTAAGGCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
16891425 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCG-CCTCGGTCCCCCCTGCGTGCTGTCGATC
66 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC-CGGTCCCCCCTGCGTGCTGTCGATC
* * * * *
16891489 CTGCTACCATAACCCTC-AGTCCGGTCCGA
130 CCGCTGCCACAACCCTCGA-TCTGG-CTGA
* * * * * * * * *
16891518 TCTTAGAC-TGAGAATTAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
16891582 GTCGATCGAAGAGGCACAATGCACAAGCCAGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGGT
65 GCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCCTGCGTGCTGTCGAT
* *
16891647 CCCGCTGCCACAACCCTCGATCTGGTTAGG
129 CCCGCTGCCACAACCCTCGATCTGGCT-GA
* * * * *
16891677 GCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
*
16891742 CC-AGCCGAAGAGGCAGAAT
66 CCGA-TCGAAGAGGCAGAAT
16891761 CCTTAAGCCA
Statistics
Matches: 691, Mismatches: 161, Indels: 49
0.77 0.18 0.05
Matches are distributed among these distances:
157 9 0.01
158 328 0.47
159 345 0.50
160 9 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGATCTGGCTGA
Found at i:16891220 original size:158 final size:157
Alignment explanation
Indices: 16890727--16891854 Score: 874
Period size: 158 Copynumber: 7.1 Consensus size: 157
16890717 ACTCCGTATG
** * **
16890727 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
16890792 CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGTGTGCTGTCGATCCT
66 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
* * *
16890857 GTTGCCACAACCCTCAATCTGATCTGAT
131 GCTGCCACAACCCT-AGTCTGGTCTGAT
* * * * * * * * * *
16890885 CTTGGAC-TAGGAAAGAACACCGTATGCATAAGTCAACCCACGAAACGAGCCTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * * *
16890949 TCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTCTGCCTCTGCGTGCTGCTGGTC
65 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC-CCCCCTGCGTGCTGCCGATC
** * * **
16891014 CCACTGCCACAACCATCGATCTGG-CTAGGG
129 CTGCTGCCACAACCCTAG-TCTGGTCT-GAT
* * * * *
16891044 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
16891109 CGACCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCT
66 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
* * *
16891174 GCTGCCGCAACCCTAAGTCCGATCTGAT
131 GCTGCCACAACCCT-AGTCTGGTCTGAT
* * * * * * *
16891202 CTTAGAC-TGGAAATGAACTCCATATGCATAAGTCAAACCATGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16891266 CC-AGTCGAAGAGGCATAATGTGCAAGCTGGGGATCGACTCGGTCCCCCTCTGCATGCTACCGAT
65 CCGA-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGCCGAT
* * * **
16891330 CCCGCTACCACAACCCTCGATCTGG-CTGGGG
128 CCTGCTGCCACAACCCTAG-TCTGGTCT-GAT
* * * *
16891361 CTTAGACATGGAATGAACTCCCTATACCTAAGGCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
16891426 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCG-CCTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC-CGGTCCCCCCTGCGTGCTGCCGATCC
* * * *
16891490 TGCTACCATAACCCTCAGTCCGGTCCGAT
130 TGCTGCCACAACCCT-AGTCTGGTCTGAT
* * * * * * * *
16891519 CTTAGAC-TGAGAATTAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGTGCTGAG
1 CTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16891583 TCGATCGAAGAGGCACAATGCACAAGCCAGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGGTC
65 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCCTGCGTGCTGCCGATC
* * **
16891648 CCGCTGCCACAACCCTCGATCTGGT-TAGGG
129 CTGCTGCCACAACCCTAG-TCTGGTCT-GAT
* * * * *
16891678 CTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *** * * *
16891743 C-AGCCGAAGAGGCAGAATCCTTAAGCCAGGGATCGGCCTAATCCCCCATGCGTGTTGCCGAACC
66 CGA-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCC
* ** *
16891807 TACTGCCGTAACCCTCAGT-TCGGCCTGAT
130 TGCTGCCACAACCCT-AGTCT-GGTCTGAT
16891836 CTTAGAC-TAGGAATGAACT
1 CTTAGACAT-GGAATGAACT
16891855 ACATATGCTT
Statistics
Matches: 757, Mismatches: 185, Indels: 56
0.76 0.19 0.06
Matches are distributed among these distances:
157 9 0.01
158 378 0.50
159 363 0.48
160 7 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTAGTCTGGTCTGAT
Found at i:16891318 original size:317 final size:317
Alignment explanation
Indices: 16890726--16891862 Score: 1320
Period size: 317 Copynumber: 3.6 Consensus size: 317
16890716 AACTCCGTAT
** * *
16890726 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
* ** * * * *
16890791 TCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGTGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
* * * * *
16890856 TGTTGCCACAACCCTCAA-TCTGATCTGATCTTGGACTAGGAAA-GAACACCGTATGCATAAGTC
131 TGCTGCCACAACCCT-AAGTCCGATCTGATCTTAGACTAGGAAATGAACTCCATATGCATAAGTC
* * * *
16890919 AACCCACGAAACGAGCCTGCGGGCACTGAGTCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATT
195 AACCCACGAAACGAGCGTGCGGGCGCTGAGTC-GTCGAAGAGGCATAATGCGCAAGCCGGGGATC
* ** * *
16890984 GGCCCGGTCTGCCTCTGCGTGCTGCTGGTCCCACTGCCACAACCATCGATCTGGCTAGG
259 GACCCGGTCCCCCTCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGATCTGGCTAGG
* * *
16891043 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
* * * *
16891108 CCGACCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
*
16891173 TGCTGCCGCAACCCTAAGTCCGATCTGATCTTAGACT-GGAAATGAACTCCATATGCATAAGTCA
131 TGCTGCCACAACCCTAAGTCCGATCTGATCTTAGACTAGGAAATGAACTCCATATGCATAAGTCA
* * * * * * *
16891237 AACCATGAAATGAGCGTACGGGCGCTGAGCCAGTCGAAGAGGCATAATGTGCAAGCTGGGGATCG
196 ACCCACGAAACGAGCGTGCGGGCGCTGAGTC-GTCGAAGAGGCATAATGCGCAAGCCGGGGATCG
* * * * * * *
16891302 ACTCGGTCCCCCTCTGCATGCTACCGATCCCGCTACCACAACCCTCGATCTGGCTGGG
260 ACCCGGTCCCCCTCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGATCTGGCTAGG
* * * *
16891360 GCTTAGACATGGAATGAACTCCCTATACCTAAGGCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
* * * *
16891425 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCG-CCTCGGTCCCCCCTGCGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-CGATCCCCCCTGCGTGCTGCCGATC
* * * * * * *
16891489 CTGCTACCATAACCCTCAGTCCGGTCCGATCTTAGACT--GAGAATTAACTCCGTATGCATAAGT
130 CTGCTGCCACAACCCTAAGTCCGATCTGATCTTAGACTAGGA-AATGAACTCCATATGCATAAGT
* * * * *
16891552 CAACCCACGAAACGAGTGTGCGGGTGCTGAGTCGATCGAAGAGGCACAATGCACAAGCCAGGGAT
194 CAACCCACGAAACGAGCGTGCGGGCGCTGAGTCG-TCGAAGAGGCATAATGCGCAAGCCGGGGAT
* *
16891617 CGACCCGGTCCCCCCCTGCGTGCTG-TCGGTCCCGCTGCCACAACCCTCGATCTGGTTAGG
258 CGACCCGGTCCCCCTCTGCGTGCTGCT-GGTCCCGCTGCCACAACCCTCGATCTGGCTAGG
* * *
16891677 GCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
* * ** * * ** * * *
16891742 CC-AGCCGAAGAGGCAGAATCCTTAAGCCAGGGATCGGCCTAATCCCCCATGCGTGTTGCCGAAC
66 CCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATC
* ** * * ** *
16891806 CTACTGCCGTAACCCTCAGTTCGGCCTGATCTTAGACTAGG-AATGAACTACATATGC
130 CTGCTGCCACAACCCTAAGTCCGATCTGATCTTAGACTAGGAAATGAACTCCATATGC
16891863 TTAGATTGGG
Statistics
Matches: 688, Mismatches: 122, Indels: 20
0.83 0.15 0.02
Matches are distributed among these distances:
316 13 0.02
317 672 0.98
318 2 0.00
319 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTAAGTCCGATCTGATCTTAGACTAGGAAATGAACTCCATATGCATAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTGAGTCGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGA
CCCGGTCCCCCTCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGATCTGGCTAGG
Found at i:16892546 original size:158 final size:157
Alignment explanation
Indices: 16892252--16892726 Score: 578
Period size: 158 Copynumber: 3.0 Consensus size: 157
16892242 AAGAACTATA
* * * * *
16892252 CCTAAGCCAACCCACGGAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGA
1 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGC
* * * *
16892317 CGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCCTGCTATCCCAACCCTCGGTCCGGTTCG
66 CGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCTTGCT-GCCCAACCCTCGGTCCGGTTCG
*
16892382 ATCTTAGGCTGGGAATGAACTCCGTATG
130 ATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
16892410 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATC-GAAAGGCAAAATGCACAAGC
1 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGC
* * * *
16892474 CGAGGATCGGCCCGATCCCCCTCTGCGTGGTGTCGGTCTTGCTGCCACAACCCTCGGTCCGGTTG
66 CGAGGATCGGCTCGATCCCCC-CTGCGTGCTGTCGATCTTGCTGCC-CAACCCTCGGTCCGGTTC
** *
16892539 GGGCTTAGACAT-GGAATGAACTCCCTATG
129 GATCTTAGAC-TGGGAATGAACTCCGTATG
* * * ** * *
16892568 CCTAAGCCAACCCATGAAATGGGCGTATGGGCGCTCAGTCGGCCAGAAAGGCAGAATGCGCAAGC
1 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGC
* * *
16892633 C-AGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCGTAACCCTCGGTCCGGTCC
66 CGA-GGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCTTGCTGCC-CAACCCTCGGTCCGGTTC
*
16892697 GATCTTAGACTGGGAATGAACTCTGTATG
129 GATCTTAGACTGGGAATGAACTCCGTATG
16892726 C
1 C
16892727 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 45, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
157 37 0.14
158 193 0.73
159 36 0.14
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (157 bp):
CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGC
CGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCTTGCTGCCCAACCCTCGGTCCGGTTCGA
TCTTAGACTGGGAATGAACTCCGTATG
Found at i:16892736 original size:26 final size:26
Alignment explanation
Indices: 16892700--16892776 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
16892690 CCGGTCCGAT
*
16892700 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16892726 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16892752 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16892777 TCCTAAGTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16893957 original size:158 final size:158
Alignment explanation
Indices: 16893531--16893957 Score: 416
Period size: 158 Copynumber: 2.7 Consensus size: 158
16893521 CCGACCAGAG
* * * * * *
16893531 AGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTGTGTGCTATCGATCTTGTTGTCGCA
1 AGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCA
* * ** * **
16893596 GCCCTCGGT-CTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTTAACCCACGAAC
66 ACCCTCGGTCCGA-TCTGATCTTAGAATGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAC
** *
16893660 GAGCGTGCAGGCGTTGAGCAGGCCGGAGT
130 GAGCGTGCAGGCACTCAGCAGGCCGGAGT
* * * * *** * * *
16893689 -GGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCCACGTGCTGTCGGTCCCGCTGCCAC
1 AGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCC-CTGTGTGCTGTCGATCCTGCTGCCGC
* * * *
16893753 AACCCTCGGTCCGA-CTGGGGT-TTAGACAT-GAAATGAACTCCCTATGCCTAAGCCAACCCACG
65 AACCCTCGGTCCGATCT--GATCTTAGA-ATGGGAATGAACTCCGTATGCCAAAGCCAACCCACG
*
16893815 AAACGAGCGTGCAGGCACTCAGCTGGCCGG-GT
127 -AACGAGCGTGCAGGCACTCAGCAGGCCGGAGT
* * * *
16893847 AGGCAGAATACATAAACCGGGGATTGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCA
1 AGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCA
* * *
16893912 ACCCTTGGTCCGATCTGATCTTAGATTGGGAATGAACTCTGTATGC
66 ACCCTCGGTCCGATCTGATCTTAGAATGGGAATGAACTCCGTATGC
16893958 TTAGACTGGG
Statistics
Matches: 208, Mismatches: 51, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
157 35 0.17
158 113 0.54
159 60 0.29
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (158 bp):
AGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCA
ACCCTCGGTCCGATCTGATCTTAGAATGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAACG
AGCGTGCAGGCACTCAGCAGGCCGGAGT
Found at i:16893960 original size:26 final size:26
Alignment explanation
Indices: 16893931--16893983 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16893921 CCGATCTGAT
* * *
16893931 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16893957 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16893983 C
1 C
16893984 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16895135 original size:26 final size:26
Alignment explanation
Indices: 16895106--16895158 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16895096 CCGATCTGAT
* * *
16895106 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16895132 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16895158 C
1 C
16895159 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16896185 original size:26 final size:26
Alignment explanation
Indices: 16896156--16896208 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16896146 CTGATCTGAT
*
16896156 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16896182 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16896208 C
1 C
16896209 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16897051 original size:26 final size:26
Alignment explanation
Indices: 16897022--16897074 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16897012 CCAGTCCGAT
* *
16897022 CTTAGACTAGGAATGAAGTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16897048 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16897074 C
1 C
16897075 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16897870 original size:821 final size:821
Alignment explanation
Indices: 16896287--16897920 Score: 2084
Period size: 821 Copynumber: 2.0 Consensus size: 821
16896277 ATCAACCTGG
* * * * * * *
16896287 TCCCCCTCTACGTGCTGTCTATCCTGTTGTCGGTCCTGCTGCCACAACCATCGGTCTGGCTGGGG
1 TCCCCCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTACCACAACCATCGGTCCGACTAGGG
* * *
16896352 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
66 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAGC
** * * *
16896417 CGGTTTGGAAAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCTACGTGCTGTCGATCTC
131 CGGTCCGGAAAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTACGTGCTGCCAATCTC
* * *
16896482 CTGCTGGTCCTGCTGCCAACCCTCGAGTCCGATCTGATCTTAAACTGGGAATGAACTTCCGTATG
196 CTGCTGGTCCTGCTACCAACCCTCGAGTCCGATCCGATCTTAAACTGGGAATGAACTTCCATATG
** * * * * **
16896547 CTAAGACATGGAATGAAGTCTGTATGCCTAAGCCAACCCATGAAACATGCGTGCGGGCACTCAGT
261 CTAAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCATAAAACATGCATGAGGGCACTCAAC
* * * * * * *
16896612 CGTCAGAGAGGCAGAATCTGTAAGCCGGGGATCGACCCGATCCCCCCTTATGTGCTACCGATCCT
326 CGTCAGAGAGGCAAAAACGGCAAACCGGGGACCGACCCGATCCCCCCTAATGTGCTACCGATCCT
* * * *
16896677 ACTGTCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
391 ACTATCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * ** ** * *
16896742 CCACAAAATGAGCATGCGGGTGCTGAGCCAGCCGAAGTGGCATAATGCGCAAGTCGGGGACCAAC
456 CCACAAAACGAGCATACGAGCACTGAGCCAGCCGAAAAGCCATAATGCACAAGTCGGGGACCAAC
* * * * * **
16896807 CCGATCCCCTTTTGCATGCTGTCAGTCCCGTTGCCACAACCCTTAGTCCGGCTGGGGCTTAAACA
521 CCGATCCCCCTCTACATGCTGTCAGTCCCGCTGCCACAACCCTTAGTCCAGCTACGGCTTAAACA
* * * *
16896872 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTGCGGGCGCTCAGCCAGTCAGA
586 TGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGAGCTCAGCCAGTCAGA
* * * *
16896937 GAGGCAGAATGCGCAAGTCAGGGAGCGGCCCGGTCCCCCCTGTGTGCTATCGATCCTACTGTCGT
651 GAGGCAGAATGCGCAAGCCAGGGAGCGGCCCGATCCCCCCTGCGTGCTATCGATCCTACTGTCGC
* * *
16897002 AACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAAGTCTGTATGCTTAGACTGGGGATGAACT
716 AACCCTCAGTCCAGTCCAATCTTAGAATAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
16897067 CCGTATGCCTAAGTCAACCAACGAAACGAGCGTATAGGCGC
781 CCGTATGCCTAAGTCAACCAACGAAACGAGCGTATAGGCGC
* *
16897108 TCCCCCTCTGCGTGCTGTCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTAGGG
1 TCCCCCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTACCACAACCATCGGTCCGACTAGGG
* * *
16897173 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGAGCACTCAGC
66 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAGC
* * *
16897238 CGG-CCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACTC-GTCCCCCTACGTGCTGCCAATCCT
131 CGGTCCGGAAAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTACGTGCTGCCAAT-CT
* * *
16897301 GCTGCTGGTCTTGCTACCATAACCCTC-AGTCC-AGTCCGATCTTAGACTGGGAATGAAC-TCCA
195 CCTGCTGGTCCTGCTACC--AACCCTCGAGTCCGA-TCCGATCTTAAACTGGGAATGAACTTCCA
* *
16897363 TATGCTTAGACATGGAATGAACCCCCGTATGCCTAAGCCAACCCATAAAACGA-GCATGAGGGCG
257 TATGCTAAGACATGGAATGAA-CCCCGTATGCCTAAGCCAACCCATAAAAC-ATGCATGAGGGCA
* * * * **
16897427 CTTAACCGGTCGGAGAGGCAAAAAGGGCAAACCGGGGACCGACCCGATCCCCTC-AATGTGCTGT
320 CTCAACC-GTCAGAGAGGCAAAAACGGCAAACCGGGGACCGACCCGATCCCCCCTAATGTGCTAC
* * * ** *
16897491 CGATCCTGCTATCGCAACCTTTGGTCCGATCTGATCTTAGACTGGGAATGACCTCCGTATGCCTA
384 CGATCCTACTATCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
16897556 AGTCAACCCACGAAACGAGCGTACGAGCACTGAGCC-GATCGAAAAGCCATAATGCACAAGTCGG
449 AGTCAACCCACAAAACGAGCATACGAGCACTGAGCCAG-CCGAAAAGCCATAATGCACAAGTCGG
* * *
16897620 GGATCAGCCCGATCCCCCTCTACATGCTGTCAGTCCCGCTGCCACAACCCTT-GATCTAGCTACG
513 GGACCAACCCGATCCCCCTCTACATGCTGTCAGTCCCGCTGCCACAACCCTTAG-TCCAGCTACG
** *
16897684 GCTTAGCCATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGAGCTCAG
577 GCTTAAACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGAGCTCAG
* * * *
16897749 TC-GATC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
642 CCAG-TCAG-AGAGGCAGAATGCGCAAGCCAGGGAGCGGCCCGATCCCCCCTGCGTGCTATCGAT
* ** * * * *
16897812 CCTGCTGTCGCAACCCTTGGTTCGGTCTAATCTTAGAATGGGAATGAACTCTGTATGCTTAGACT
705 CCTACTGTCGCAACCCTCAGTCCAGTCCAATCTTAGAATAGGAATGAACTCTGTATGCTTAGACT
* * *
16897877 GGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGT
770 GGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGT
16897921 GCAGACGCTT
Statistics
Matches: 690, Mismatches: 112, Indels: 22
0.84 0.14 0.03
Matches are distributed among these distances:
819 19 0.03
820 75 0.11
821 551 0.80
822 45 0.07
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (821 bp):
TCCCCCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTACCACAACCATCGGTCCGACTAGGG
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAGC
CGGTCCGGAAAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTACGTGCTGCCAATCTC
CTGCTGGTCCTGCTACCAACCCTCGAGTCCGATCCGATCTTAAACTGGGAATGAACTTCCATATG
CTAAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCATAAAACATGCATGAGGGCACTCAAC
CGTCAGAGAGGCAAAAACGGCAAACCGGGGACCGACCCGATCCCCCCTAATGTGCTACCGATCCT
ACTATCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACAAAACGAGCATACGAGCACTGAGCCAGCCGAAAAGCCATAATGCACAAGTCGGGGACCAAC
CCGATCCCCCTCTACATGCTGTCAGTCCCGCTGCCACAACCCTTAGTCCAGCTACGGCTTAAACA
TGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGAGCTCAGCCAGTCAGA
GAGGCAGAATGCGCAAGCCAGGGAGCGGCCCGATCCCCCCTGCGTGCTATCGATCCTACTGTCGC
AACCCTCAGTCCAGTCCAATCTTAGAATAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCAACGAAACGAGCGTATAGGCGC
Found at i:16897879 original size:26 final size:26
Alignment explanation
Indices: 16897843--16897895 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16897833 TCGGTCTAAT
16897843 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
* *
16897869 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
16897895 C
1 C
16897896 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:16898593 original size:26 final size:26
Alignment explanation
Indices: 16898555--16898607 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16898545 GGCTCAAACT
*
16898555 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16898581 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16898607 C
1 C
16898608 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16899787 original size:26 final size:26
Alignment explanation
Indices: 16899758--16899810 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16899748 CCAGTCTGAT
*
16899758 CTTAGACTAGGAATGAAGTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16899784 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16899810 C
1 C
16899811 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16900152 original size:319 final size:309
Alignment explanation
Indices: 16899560--16900152 Score: 683
Period size: 309 Copynumber: 1.9 Consensus size: 309
16899550 CTTTTTGCAA
* * *
16899560 GCTGTCGGTCTTGCTACCACAACCCTCAGTCCGACTGGGGCTTAAACGTGGAATGAACTCCCTAT
1 GCTGTCGGTCCTGCTACCACAACCCTCAGTCCGACTAGGGCTTAAACATGGAATGAACTCCCTAT
* * * * ** *
16899625 GCCTAAGCCAACCCACGAAATGGGCTTGCGGGTGCTCAACCGGTCAGAGAGCCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCGGCCAGAGAGCCAGAATGCGCAAG
* * * *
16899690 TCAGGGATCGGCCCGGTCCCCCCTATGTGCTACCGATCCTGCTGTCGTAACCCTCGGTCCAGTCT
131 TCAGGGATCGACCCGGTCCCCCCTACGTGCTACCAATCCTGCTGTCGTAACCCTCGGTCCAGTCC
* * * *
16899755 GATCTTAGACTAGGAATGAAGTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
196 GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAA
**
16899820 CCAATGAAACGAGCGTATAGGCACTCCCCCTCAGCGTGCTGTCGATCCC
261 CCAACAAAACGAGCGTATAGGCACTCCCCCTCAGCGTGCTGTCGATCCC
* * * **
16899869 GCTGTCGGTCCTGCTACCACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCTGTAT
1 GCTGTCGGTCCTGCTACCACAACCCTCAGTCCGACTAGGGCTTAAACATGGAATGAACTCCCTAT
* * * *
16899934 GCCTAAGCCAACCTACGAAACGAGCGTGCGAGCACTCAGCCGGCCGGAGAG-TAGAATGCGCAA-
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCGGCCAGAGAGCCAGAATGCGCAAG
* * * *
16899997 TCCGGGGATCGACTCGGT-CCCCCTGCGTGCTGCCAATCCTGCTACTGGTCTTGCTACCATAACC
131 T-CAGGGATCGACCCGGTCCCCCCTACGTGCTACCAATCCTG---CT-GTC--G------TAACC
* * *
16900061 CTCGGTCTAGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACCCCG
183 CTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACCCCG
*
16900125 TATGCCTAAG-CTAACCCACAAAACGAGC
247 TATGCCTAAGTC-AACCAACAAAACGAGC
16900153 ATGAGGGCGC
Statistics
Matches: 232, Mismatches: 37, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
307 20 0.09
308 24 0.10
309 98 0.42
310 2 0.01
311 3 0.01
313 1 0.00
318 1 0.00
319 82 0.35
320 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (309 bp):
GCTGTCGGTCCTGCTACCACAACCCTCAGTCCGACTAGGGCTTAAACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCGGCCAGAGAGCCAGAATGCGCAAG
TCAGGGATCGACCCGGTCCCCCCTACGTGCTACCAATCCTGCTGTCGTAACCCTCGGTCCAGTCC
GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAA
CCAACAAAACGAGCGTATAGGCACTCCCCCTCAGCGTGCTGTCGATCCC
Found at i:16900456 original size:159 final size:158
Alignment explanation
Indices: 16900260--16900564 Score: 362
Period size: 159 Copynumber: 1.9 Consensus size: 158
16900250 CCGGTCTGAT
* * * * *
16900260 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCACTGAGC
1 CTTAGACTGGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGCACTCAGC
* *
16900325 CGATCGAAAAGCCATAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCTACATGCTGTC-AGTC
66 CGATCGAAAAGCCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCC-CTACATGCTGTCGA-TC
16900389 CCGCTGCCACAACCCTCGATCTAGCTACGG
129 CCGCTGCCACAACCCTCGATCTAGCTACGG
* * * * *
16900419 CTTAGACAT-GGAATGAAATCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGCACTCAG
* * * * * * * * *
16900483 TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGATCGAAAAGCCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCC
* *
16900548 TGCTGCCGCAACCCTCG
130 CGCTGCCACAACCCTCG
16900565 GTCCGATCCG
Statistics
Matches: 121, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
158 28 0.23
159 92 0.76
160 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (158 bp):
CTTAGACTGGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGCACTCAGC
CGATCGAAAAGCCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCCC
GCTGCCACAACCCTCGATCTAGCTACGG
Found at i:16900601 original size:819 final size:812
Alignment explanation
Indices: 16899030--16900654 Score: 1930
Period size: 819 Copynumber: 2.0 Consensus size: 812
16899020 ATCAACCTGG
* * * * * *
16899030 TCCCCCTCTGCGTGCTATCTATCCTGCTGCCGGTCCTGCTGCCACAACCATCGGTCTGGCTGGGG
1 TCCCCCTCAGCGTGCTATCGATCCCGCTGCCGGTCCTGCTACCACAACCATCGGTCTGACTAGGG
* *
16899095 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
66 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
** * * * *
16899160 CGGTTGGAAAGGTAGAATGCGTAAGTCGGGGATCAACCCGGTCCCCCCTACGTGCTGTCGATCTT
131 CGGCCGGAAAGGTAGAATGCGCAAGTCGGGGATCAACCCGGTCCCCCCTACGTGCTGCCAATCCT
* * * * * *
16899225 CCTGCTGGTCCTGCTGCCCAACCCTCGGTCCGATCTGATCTTAGACTGTGAATGAAATCCGTATG
196 CCTACTGGTCCTGCTACCCAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAAATCCATATG
** * * * **
16899290 CTAAGACATGGAATGAAGTCTGTATGCCTAAGCCAACCCAATGAAACATGCGTGCGGGCACTCGG
261 CTAAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCAA-GAAACATGCATGAGGGCACTCAA
* * * ** * * * * **
16899355 TCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCACCTTACGTGCTACCGATC
325 CCGGTCGGAGAGGCAAAAAGCACAAACCGAGGACCGACCCGATCCCACCCAACGTGCTACCGATC
*
16899420 CTACTGTCGCAACCCTCGGTTCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
390 CTACTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * * ** * * *
16899485 ACCCATAAAACGAGCGTGCGGGTGCTGAGCCAGCCAAAGCGGCCATAATGCGCAAGTCCCGGTCC
455 ACCCACAAAACGAGCGTACGAGCACTGAGCCAGCCAAA-CAGCCATAATGCACAAGTCCCGATCC
** * * * ** * ** *
16899550 CTTTTTGCAAGCTGTCGGTCTTGCTACCACAACCCTCAGTCCGACTGGGGCTTAAACGTGGAATG
519 CCCTCTACAAGCTGTCAGTCCCGCTACCACAACCCTCAGTCAGACTACGGCTTAAACATGGAATG
* * * *
16899615 AACTCCCTATGCCTAAGCCAACCCACGAAATGGGCTTGCGGGTGCTCAACCGGTCAGAGAGCCAG
584 AAATCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAACCGGTCAGAGAGCCAG
* * * *
16899680 AATGCGCAAGTCAGGGATCGGCCCGGTCCCCCCTATGTGCTACCGATCCTGCTGTCGTAACCCTC
649 AATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCTC
* * *
16899745 GGTCCAGTCTGATCTTAGACTAGGAATGAAGTCCGTATGCTTAGACTGGGGATGAACTCCGTATG
714 GGTCCAGTCCGATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATG
16899810 CCTAAGTCAACCAATGAAACGAGCGTATAGGCAC
779 CCTAAGTCAACCAATGAAACGAGCGTATAGGCAC
* * *
16899844 TCCCCCTCAGCGTGCTGTCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCTGACTAGGG
1 TCCCCCTCAGCGTGCTATCGATCCCGCTGCCGGTCCTGCTACCACAACCATCGGTCTGACTAGGG
* *
16899909 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAACGAGCGTGC-GAGCACTCAG
66 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG-GCACTCAG
* * * *
16899973 CCGGCCGGAGA-GTAGAATGCGCAA-TCCGGGGATCGACTCGGT-CCCCCTGCGTGCTGCCAATC
130 CCGGCCGGAAAGGTAGAATGCGCAAGT-CGGGGATCAACCCGGTCCCCCCTACGTGCTGCCAATC
* * * * *
16900035 CTGCTACTGGTCTTGCTACCATAACCCTCGGTCTAG-TCCGATCTTAGATTGGGAATGAACTCCA
194 CTCCTACTGGTCCTGCTACC-CAACCCTCGGTC-AGATCCGATCTTAGACTGGGAATGAAATCCA
* * *
16900099 TATGCTTAGACATGGAATGAACCCCGTATGCCTAAGCTAACCCACA-AAACGA-GCATGAGGGCG
257 TATGCTAAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCA-AGAAAC-ATGCATGAGGGCA
* * * **
16900162 CTCAACCGGTCGGAGAGGCAAAAAGCACAAATCGAGGACCGACCTGATCCC-CCCAATGTGCTGT
320 CTCAACCGGTCGGAGAGGCAAAAAGCACAAACCGAGGACCGACCCGATCCCACCCAACGTGCTAC
* * ** *
16900226 CGATCCTGCTGT-GCCAA-CCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
385 CGATCCTACTGTCG-CAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCT
* * *
16900289 AAGTCAACCCACGAAACGAGCGTACGAGCACTGAGCCGATCGAAA-AGCCATAATGCACAAGTCG
449 AAGTCAACCCACAAAACGAGCGTACGAGCACTGAGCC-AGCCAAACAGCCATAATGCACAA----
* *
16900353 GGGATCAGCCCGATCCCCCTCTACATGCTGTCAGTCCCGCTGCCACAACCCTC-GATCTAG-CTA
509 --G-T---CCCGATCCCCCTCTACAAGCTGTCAGTCCCGCTACCACAACCCTCAG-TC-AGACTA
*
16900416 CGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTC
566 CGGCTTAAACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTC
** * * * **
16900481 AGTCGGTC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGA
631 AACCGGTCAG-AGAGCCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTACCGA
*
16900545 TCCTGCTGCCGCAACCCTCGGTCC-GATCCGATCTTAGAATGGGAATGAACTCCGTATGCTTAGA
695 TCCTGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGAATAGGAATGAACTCCGTATGCTTAGA
*
16900609 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
759 CTGGGGATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGT
16900655 GCGGACGCTT
Statistics
Matches: 678, Mismatches: 111, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
809 13 0.02
810 73 0.11
811 27 0.04
812 83 0.12
813 101 0.15
814 124 0.18
815 1 0.00
816 1 0.00
818 3 0.00
819 251 0.37
820 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (812 bp):
TCCCCCTCAGCGTGCTATCGATCCCGCTGCCGGTCCTGCTACCACAACCATCGGTCTGACTAGGG
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
CGGCCGGAAAGGTAGAATGCGCAAGTCGGGGATCAACCCGGTCCCCCCTACGTGCTGCCAATCCT
CCTACTGGTCCTGCTACCCAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAAATCCATATG
CTAAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCAAGAAACATGCATGAGGGCACTCAAC
CGGTCGGAGAGGCAAAAAGCACAAACCGAGGACCGACCCGATCCCACCCAACGTGCTACCGATCC
TACTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
CCCACAAAACGAGCGTACGAGCACTGAGCCAGCCAAACAGCCATAATGCACAAGTCCCGATCCCC
CTCTACAAGCTGTCAGTCCCGCTACCACAACCCTCAGTCAGACTACGGCTTAAACATGGAATGAA
ATCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAACCGGTCAGAGAGCCAGAA
TGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGG
TCCAGTCCGATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
TAAGTCAACCAATGAAACGAGCGTATAGGCAC
Found at i:16900606 original size:26 final size:26
Alignment explanation
Indices: 16900577--16900629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16900567 CCGATCCGAT
16900577 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
16900603 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
16900629 C
1 C
16900630 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:16902221 original size:195 final size:195
Alignment explanation
Indices: 16901886--16902238 Score: 456
Period size: 195 Copynumber: 1.8 Consensus size: 195
16901876 GGTCTGGTCC
* * * * *
16901886 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTACGCCTAAGCCAA
* *** * * **
16901951 CCCACGAAAAGAGCGTGCGGGTGCTCAACCGGCTGGAGAGGCAGAATGCGTAAGCCGAAGATCGG
66 CCCACGAAAAGAGCGTGCAGGCAATCAACCGGCTGGAGAGGCAGAATGCGCAAGCCGAAGACCAA
* * *
16902016 TCCGGTCCCCCTGCGTACTGCCGATCCTGTTGCTGGTCCTATTGCCGCAAGCCTCGGTCCGTTTT
131 CCCAGTCCCCCTACGTACTGCCGATCCTGTTGCTGGTCCTATTGCCGCAAGCCTCGGTCCGTTTT
* * *
16902081 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCATGGAATGAACTCTGTACGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTACGCCTAAGCCAA
* * * **
16902146 CCCACGAAACGAGCGTGCAGGCAATCAGCCGG-TCGGAGAGGTAGAATGCGCAAGCCGGGGACCA
66 CCCACGAAAAGAGCGTGCAGGCAATCAACCGGCT-GGAGAGGCAGAATGCGCAAGCCGAAGACCA
* *
16902210 ACCCAGTCCCCCTATGTACTGTCGATCCT
130 ACCCAGTCCCCCTACGTACTGCCGATCCT
16902239 ACTCCGCAAC
Statistics
Matches: 131, Mismatches: 26, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
194 1 0.01
195 130 0.99
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (195 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTACGCCTAAGCCAA
CCCACGAAAAGAGCGTGCAGGCAATCAACCGGCTGGAGAGGCAGAATGCGCAAGCCGAAGACCAA
CCCAGTCCCCCTACGTACTGCCGATCCTGTTGCTGGTCCTATTGCCGCAAGCCTCGGTCCGTTTT
Found at i:16902517 original size:681 final size:689
Alignment explanation
Indices: 16901202--16902711 Score: 1818
Period size: 681 Copynumber: 2.2 Consensus size: 689
16901192 GGTCCAGTTT
* ** * *
16901202 GATCTTAAACTGGGAATGAACTATGTATGCTTAGACTGGAGATGAACTCCGTATGACTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * *
16901267 CCCACGAAACGAGCGTGCGGGCGCTCAACTGGTTGGAGTGGTAGAATGCGCAAGCCAAGGATCTG
66 CCCACGAAACGAGCGTGCGGGCGCTCAACCGG-TGGAGAGGCAGAATGCGCAAGCCAAGGATCGG
* * * * *
16901332 CCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTTGGTCCTGCTGTCGCAAGCCTCGGTCCGGTC
130 CCCGATCCCCCCTGCGTACTGCCGATCCTGCTGCTGGTCCTACTGCCGCAAGCCTCGGTCCGGTC
* *
16901397 CGATCATAGACTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
195 CGATCATAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCA
* * * * ** * *
16901462 ACTCATAGAATGAGCATGCGGGCCCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCG
260 ACCCAGAGAACGAGCATGCAGGCAATCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCA
** * *
16901527 ACCCGATCCCCTCCTGCATGTTGTGATCCTGTTGCCGCAACCCTCTGTCCAGTCTGATCTTAGAC
325 ACCCGATCCCCTCCT-CATGTTGTGATCCTACTGCCGCAACCCTCGGTCCAGTCCGATCTTAGAC
* * *
16901592 TGGGAATGAACTCCGTACGCTTAAGTCAACCCACAAAACGAGCGTTCGGGCACTGAGCCGATCGG
389 TGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAACGTTCGGGCACTGAGCCGATCAG
* * * * * **
16901657 AGAAGCATAATGCGCAAGTCGGGGATCAGCTCGGTCCCTCTTTGCGTGCTGTCAGTCCGCTGCCA
454 AGAAGCATAATGCACAAGACGGGGATCAGCTCCGTCCCCCTCTGCGTGCTACCAGTCCGCTGCCA
* *
16901722 CAACCCTCAGTCTGGCTGGGGCTTAGACATGCAATGAACTCCCTAAGCTTATGCCAACCCATAAA
519 CAACCCTCAGTCTGGCTGGGGCTTAGACATGCAATGAACTCCCTAAGCCTAAGCCAACCCATAAA
* * * * * *
16901787 ACGGGTGTGTGGGCTCTCAACCAGCCGAAGAGGTAGAATGCACAAGTCGGGGATCGGCCCGGT-C
584 ACGGGTGCGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCAGTCC
* * * *
16901851 CCT-C-CTG-C-A-C-GCTGTCGCAACCCTCGGTCTGGTCC
649 CCTGCACTGTCGACCTGCTGTCACAACACTCGGTCCGATCC
* *
16901886 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * *
16901951 CCCACGAAAAGAGCGTGCGGGTGCTCAACCGGCTGGAGAGGCAGAATGCGTAAGCCGAA-GATCG
66 CCCACGAAACGAGCGTGCGGGCGCTCAACCGG-TGGAGAGGCAGAATGCGCAAGCC-AAGGATCG
* * * * *
16902015 GTCCGGT-CCCCCTGCGTACTGCCGATCCTGTTGCTGGTCCTATTGCCGCAAGCCTCGGTCCGTT
129 GCCCGATCCCCCCTGCGTACTGCCGATCCTGCTGCTGGTCCTACTGCCGCAAGCCTCGGTCCGGT
** * * * *
16902079 TTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCATGGAATGAACTCTGTACGCCTAAGCC
194 CCGATCATAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCC
* ** *
16902144 AACCCACGA-AACGAGCGTGCAGGCAATCAGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGAC
259 AACCCA-GAGAACGAGCATGCAGGCAATCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAC
16902208 CAACCC-AGT-CCC-CCT-ATGTACTGTCGATCCTACT-CCGCAACCCTCGGTCC-GATCCGATC
323 CAACCCGA-TCCCCTCCTCATGT--TGT-GATCCTACTGCCGCAACCCTCGGTCCAG-TCCGATC
* * * * **
16902267 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTTCGGGTGCTGAGCC
383 TTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAACGTTCGGGCACTGAGCC
* * * *
16902332 -AGTCAGAGAGGCGTAATGCACAAGACGGGGATC-GAC-CCGTCCCCCTCTGCGTGTTACCGGTC
448 GA-TCAGAGAAGCATAATGCACAAGACGGGGATCAG-CTCCGTCCCCCTCTGCGTGCTACCAGT-
* * * *
16902394 CCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAATTCCCTATGCCTAAGCCA
510 CCGCTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGCAATGAACTCCCTAAGCCTAAGCCA
* * * * * *
16902459 ACCCATGAAATGGGTGCGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGA-AAGTCGGGGATC
575 ACCCATAAAACGGGTGCGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGC-ACAAGTCGGGGATC
16902523 AGCCCAGTCCCCCCTGCATGCTGTCGATCCTGCTGTCACAACACTCGGTCCGATCC
639 AGCCCAGT--CCCCTGCA--CTGTCGA-CCTGCTGTCACAACACTCGGTCCGATCC
* *
16902579 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * *
16902644 CCCACGAAACGAGCATGCGGGCGCTCAACCGGTCGGAGAGGCATAATACACAAGCCGAGGATCAG
66 CCCACGAAACGAGCGTGCGGGCGCTCAACCGGT-GGAGAGGCAGAATGCGCAAGCCAAGGATCGG
16902709 CCC
130 CCC
16902712 AATCTCCCTC
Statistics
Matches: 696, Mismatches: 105, Indels: 41
0.83 0.12 0.05
Matches are distributed among these distances:
679 4 0.01
680 21 0.03
681 228 0.33
682 12 0.02
683 163 0.23
684 121 0.17
685 3 0.00
688 3 0.00
689 1 0.00
690 1 0.00
692 3 0.00
693 136 0.20
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (689 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAACCGGTGGAGAGGCAGAATGCGCAAGCCAAGGATCGGC
CCGATCCCCCCTGCGTACTGCCGATCCTGCTGCTGGTCCTACTGCCGCAAGCCTCGGTCCGGTCC
GATCATAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAA
CCCAGAGAACGAGCATGCAGGCAATCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCAA
CCCGATCCCCTCCTCATGTTGTGATCCTACTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTG
GGAATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAACGTTCGGGCACTGAGCCGATCAGAG
AAGCATAATGCACAAGACGGGGATCAGCTCCGTCCCCCTCTGCGTGCTACCAGTCCGCTGCCACA
ACCCTCAGTCTGGCTGGGGCTTAGACATGCAATGAACTCCCTAAGCCTAAGCCAACCCATAAAAC
GGGTGCGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCAGTCCCC
TGCACTGTCGACCTGCTGTCACAACACTCGGTCCGATCC
Found at i:16902563 original size:158 final size:158
Alignment explanation
Indices: 16902109--16902608 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 158
16902099 AACTCCGTAT
* * * * **
16902109 GCTTAGGCATGGAATGAACTCTGTACGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCAATCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
16902174 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGACCAACCCAGT-CCCCCT--ATGTACTGTCGAT
66 CCGGTCGGAGAGGCAGAATGCGAAAGACGGGGATCAGCCCAGTCCCCCCTGCATG--CTGTCGAT
* *
16902236 CCTACT-CCGCAACCCTCGGTCCGATCCGA
129 CCTGCTGCCACAACCCTCGGTCCGATCCGA
* * * * * *
16902265 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * **
16902329 GCCAGTCAGAGAGGC-GTAATGC-ACAAGACGGGGATC-GACCC-GTCCCCCTCTGCGTGTTACC
65 GCCGGTCGGAGAGGCAG-AATGCGA-AAGACGGGGATCAG-CCCAGTCCCCC-CTGCATGCTGTC
* * * * * *
16902390 GGTCCCGCTGCCACAACCCTCGGTCTG-GCTGGG
126 GATCCTGCTGCCACAACCCTCGGTCCGATC-CGA
* ** * * * *
16902423 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCATGAAATGGGTGCGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
*
16902488 CCGGTCGGAGAGGCAGAATGCGAAAGTCGGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGAAAGACGGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCC
* * *
16902553 TGCTGTCACAACACTCGGTCCGATCCAA
131 TGCTGCCACAACCCTCGGTCCGATCCGA
* *
16902581 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
16902609 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 63, Indels: 32
0.74 0.18 0.09
Matches are distributed among these distances:
155 4 0.02
156 84 0.32
157 12 0.05
158 150 0.57
159 14 0.05
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGAAAGACGGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGATCCGA
Found at i:16902611 original size:26 final size:26
Alignment explanation
Indices: 16902582--16902634 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16902572 CCGATCCAAT
16902582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16902608 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16902634 C
1 C
16902635 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16903028 original size:171 final size:169
Alignment explanation
Indices: 16902607--16903193 Score: 449
Period size: 171 Copynumber: 3.5 Consensus size: 169
16902597 AACTCCGTAT
* * *
16902607 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTC-A
* * * * * **
16902672 CCGGTCGGAGAGGCATAATACACAAGCCGAGGATCAGCCCAATCTCCCTCTGTGTGCTGTCGATC
64 GCGGTCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCAATCTCCCCCTACGTGCTGTCGATC
* * ***
16902737 CCGCTGTCGATCCTGCTATCACAACCCTCTGTCCGACTGGG
129 CCGCTGTCGATCCTACTACCACAACCCTCTGTCCGACTCAA
* * *
16902778 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGACCGTGCGAGCACTCA
1 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGCTCA
*** * * * * *
16902842 GCCAACCAGAGAGGCAGAATGCGCGAGCTGAGGATCAGCCCGATC-CCACCCTACGTGCTGTCGA
64 GCGGTCGA-AGAGGCAGAATGCACAAGCCGAGGATCAGCCCAATCTCC-CCCTACGTGCTGTCGA
* * *
16902906 TCCTGCTG-CTGGTCCTACTACCACAACCCTCTGTCCG-GTCCAA
127 TCCCGCTGTC-GATCCTACTACCACAACCCTCTGTCCGACT-CAA
* * * * * *
16902949 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAACAAGCGTGCAGGTGCTCAG
1 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAG
* * ** ** *
16903014 TCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGTTCGGTC-CCCCTCTGCGTGCTGTCGAT
65 -CGGTCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCAATCTCCCC-CTACGTGCTGTCGAT
* ***
16903078 CCCGC--T-G---------CCACAACCCTCAGTCC-AGCTGGG
128 CCCGCTGTCGATCCTACTACCACAACCCTCTGTCCGA-CTCAA
* *
16903108 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCACTC
1 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGC-GGCGCTC
*
16903171 AGTCGGTCGAAGAGGTAGAATGC
63 AG-CGGTCGAAGAGGCAGAATGC
16903194 GTAAGCCAGG
Statistics
Matches: 335, Mismatches: 66, Indels: 42
0.76 0.15 0.09
Matches are distributed among these distances:
158 1 0.00
159 88 0.26
160 2 0.01
168 1 0.00
170 11 0.03
171 227 0.68
172 5 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (169 bp):
GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGC
GGTCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCAATCTCCCCCTACGTGCTGTCGATCCC
GCTGTCGATCCTACTACCACAACCCTCTGTCCGACTCAA
Found at i:16903466 original size:184 final size:184
Alignment explanation
Indices: 16903108--16903471 Score: 419
Period size: 184 Copynumber: 2.0 Consensus size: 184
16903098 TCCAGCTGGG
* * *
16903108 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGAGTACGAGCACTCAG
* * ** * *
16903173 TCGGTCGAAGAGGTAGAATGCGTAAGCCAGGGATCGCCCCGATCGCGCTTGTATGCTGCCGATCC
66 TCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCGCCCCGATCCCCCTTGTATGCTGCCGATCC
** ** * *
16903238 TGCTACCGTAACCCTCGATCCGGTTCGATCTTAGACTAGGAATGAACTCCGTTT
131 TGCTACCACAACCCTCGATCCGACTCGAGCTCAGACTAGGAATGAACTCCGTTT
* * * * * *
16903292 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGGGATTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGAGTACGAGCACTCAG
* * ** * *
16903357 TCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCGGTCCCCCTCTGTGTGCTGCCGAT-
66 TCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCGCCCCGATCCCCCT-TGTATGCTGCCGATC
* *
16903421 CTGCTACCACAACCTTC-AGTCCGACTGGAGCTCAGAC-ATGGAATGAACTCC
130 CTGCTACCACAACCCTCGA-TCCGACTCGAGCTCAGACTA-GGAATGAACTCC
16903472 CTATGCCTAA
Statistics
Matches: 148, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
183 2 0.01
184 133 0.90
185 13 0.09
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGAGTACGAGCACTCAG
TCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCGCCCCGATCCCCCTTGTATGCTGCCGATCC
TGCTACCACAACCCTCGATCCGACTCGAGCTCAGACTAGGAATGAACTCCGTTT
Found at i:16903586 original size:158 final size:158
Alignment explanation
Indices: 16903296--16903593 Score: 409
Period size: 158 Copynumber: 1.9 Consensus size: 158
16903286 CCGTTTGCTT
* * * *
16903296 AGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGGGATTACGAGCGCTCAGTCGA
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGAGTACGAGCGCTCAGCCGA
** * * * *
16903361 TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCGGTCCCCCTCTGTGTGCTGCCGATCTGCT
66 TCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCTACT
16903426 ACCACAACCTTCAGTCCGACTGGAGCTC
131 ACCACAACCTTCAGTCCGACTGGAGCTC
* * * *
16903454 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGG
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGAGTACGAGCGCTCAGCCGA
** * *
16903519 TCGGAGAGGCAGAATGTGCAAGCCAAGGATTGGCCCGATCCCGCT-TGCGTGCTGCCGATCCTAC
66 TCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGAT-CTAC
*
16903583 TACCGCAACCT
130 TACCACAACCT
16903594 CCGGTCCAAT
Statistics
Matches: 120, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
157 13 0.11
158 107 0.89
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGAGTACGAGCGCTCAGCCGA
TCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCTACT
ACCACAACCTTCAGTCCGACTGGAGCTC
Found at i:16903609 original size:342 final size:343
Alignment explanation
Indices: 16902950--16903767 Score: 1083
Period size: 342 Copynumber: 2.4 Consensus size: 343
16902940 CCGGTCCAAT
* * * * *
16902950 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAACAAGCGTGC-AGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGA-GCGCTCAG
* * *
16903014 TCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGTTCGGTCCCCCTCTGCGTGCTGTCGATC
65 TCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTTCGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
16903079 CCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CTGCTACCACAACCCTCAGTCCAGCTGGAGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
16903144 ACCCACGAAACAGGCGTGCGGGCACTCAGTCGGTCGAAGAGGTAGAATGCGTAAGCCAGGGATCG
195 ACCCACGAAACAGGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCAAGGATCG
* * * * **
16903209 CCCCGATCGCGCTTGTATGCTGCCGATCCTGCTACCGTAACCCTCGATCCGGTTCGATCTTAGAC
260 CCCCGATCCCGCTTGCATGCTGCCGATCCTACTACCGCAACCCTCGATCCAATTCGATCTTAGAC
*
16903274 TAGGAATGAACTCCGTTTG
325 TAGGAATGAACTCCGTATG
* ** *
16903293 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGGGATTACGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGAGCGCTCAG
* *
16903357 TCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCGGTCCCCCTCTGTGTGCTGCCGAT-
65 TCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTTCGGTCCCCCTCTGCGTGCTGCCGATC
*
16903421 CTGCTACCACAACCTTCAGTCC-GACTGGAGCTCAGACATGGAATGAACTCCCTATGCCTAAGCC
130 CTGCTACCACAACCCTCAGTCCAG-CTGGAGCTCAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
16903485 AACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCAAGGATT
194 AACCCACGAAACAGGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCAAGGATC
* * *
16903550 GGCCCGATCCCGCTTGCGTGCTGCCGATCCTACTACCGCAA-CCTCCGGTCCAATTCGATCTTAG
259 GCCCCGATCCCGCTTGCATGCTGCCGATCCTACTACCGCAACCCT-CGATCCAATTCGATCTTAG
* * *
16903614 ATTGGGAATGAACTTCGTATG
323 ACTAGGAATGAACTCCGTATG
* *
16903635 CTTAGACTGGGGATGAACTCCGTATGCCTAAG-TCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAGCGTGCGAGCGCTCAG
* * * * * * *
16903699 CCGACCGGAGAGGTAGAATGCGCAAGTCGAGGATCGGTTCGGTCCCCC-CTGCGTACTGCCGATC
65 TCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTTCGGTCCCCCTCTGCGTGCTGCCGATC
16903763 CTGCT
130 CTGCT
16903768 GCTGGTCCTG
Statistics
Matches: 411, Mismatches: 57, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
341 19 0.05
342 280 0.68
343 110 0.27
344 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGAGCGCTCAGT
CGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTTCGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCACAACCCTCAGTCCAGCTGGAGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACAGGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCAAGGATCGC
CCCGATCCCGCTTGCATGCTGCCGATCCTACTACCGCAACCCTCGATCCAATTCGATCTTAGACT
AGGAATGAACTCCGTATG
Found at i:16903635 original size:158 final size:158
Alignment explanation
Indices: 16903296--16903635 Score: 396
Period size: 158 Copynumber: 2.2 Consensus size: 158
16903286 CCGTTTGCTT
* * *
16903296 AGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGGGATTACGAGCGCTCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGAGTACGAGCGCTCAGCCGA
** * * * *
16903361 TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCGGTCCCCCTCTGTGTGCTGCCGATCTGCT
66 TCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCTACT
* * *
16903426 ACCACAACCTTCAGTCCGACTGGAGCTC
131 ACCACAACCTCCAGTCCAACTCGAGCTC
* * * * *
16903454 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGAGTACGAGCGCTCAGCCGA
** * *
16903519 TCGGAGAGGCAGAATGTGCAAGCCAAGGATTGGCCCGATCCCGCT-TGCGTGCTGCCGATCCTAC
66 TCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGAT-CTAC
* * * * *
16903583 TACCGCAACCTCCGGTCCAATTCGATCTT
130 TACCACAACCTCCAGTCCAACTCGAGCTC
* *
16903612 AGA-TTGGGAATGAACTTCGTATGC
1 AGACAT-GGAATGAACTCCGTATGC
16903636 TTAGACTGGG
Statistics
Matches: 151, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 14 0.09
158 137 0.91
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGAGTACGAGCGCTCAGCCGA
TCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCTACT
ACCACAACCTCCAGTCCAACTCGAGCTC
Found at i:16903638 original size:26 final size:26
Alignment explanation
Indices: 16903609--16903661 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16903599 CCAATTCGAT
* *
16903609 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16903635 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16903661 C
1 C
16903662 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16903688 original size:685 final size:680
Alignment explanation
Indices: 16902236--16903769 Score: 1576
Period size: 685 Copynumber: 2.2 Consensus size: 680
16902226 TACTGTCGAT
* * * * * *
16902236 CCTACT-CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
1 CCTACTACCACAACCATCTGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
16902300 AACCCACGAAATGAACGTTCGGGTGCTGAGCCAGTC-AGAGAGGC-GTAATGCACAAGACGGGGA
66 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGA-AGAGGCAG-AATGCACAAGACGGGGA
** * * * * * **
16902363 TC-GACCCGTCCCCCTCTGCGTGTTACCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTT
129 TCGGTTCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTT
* * ** * *
16902427 AGACATGGAATGAATTCCCTATGCCTAAGCCAACCCATGAAATGGGTGCGCGGGCGCTCAGCCGG
194 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGCGCGGGCACTCAGCCGG
* * * *
16902492 TCGGAGAGGCAGAATGCGAAAGTCGGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCCTGCT
259 TCGAAGAGGCAGAATGCGAAAGCCAGGGATCAGCCCAGTCCCCCCTGCATGCTGCCGATCCTGCT
** * * *
16902557 GTCACAACACTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
324 ACCACAACACTCGATCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * *
16902622 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGGTCGGAGAGGCA
389 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACCGATCGGAGAGGCA
* *
16902687 TAATACACAAGCCGAGGATCAGCCCAATCTCCCTCTGTGTGCTGTCGATCCCGCTGTCGATCCTG
454 GAATACACAAGCCGAGGATCAGCCCAATCTCCCTC---GTGCTGTCGAT--CGCTGCCGATCCTG
* * * * *
16902752 CTATCACAACCCTCTGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
514 CTACCACAACCCTCAGTCCGACTGGAGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * **
16902817 CACGAAATGACCGTGCGAGCACTCAGCCAACCAGAGAGGCAGAATGCGCGAGCTGAGGATCAGCC
579 CACGAAACGACCGTGCGAGCACTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCAAGGATCAGCC
* * * * **
16902882 CGATCCCACCCTACGTGCTGTCGATCCTGCTGCTGGT
644 CGATCCCACCCTACGTGCTGCCGATCCTACTACCGAA
* * *
16902919 CCTACTACCACAACCCTCTGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
1 CCTACTACCACAACCATCTGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
16902984 AACCCATGGAACAAGCGTGCAGGTGCTCAGTCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATC
66 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAATGCACAAGACGGGGATC
*
16903049 GGTTCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAG
131 GGTTCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAG
* *
16903114 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAGTCGGTC
196 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGCGCGGGCACTCAGCCGGTC
* * * * * * *
16903179 GAAGAGGTAGAATGCGTAAGCCAGGGATC-GCCCCGATCGCGCTTGTATGCTGCCGATCCTGCTA
261 GAAGAGGCAGAATGCGAAAGCCAGGGATCAGCCCAG-TCCCCCCTGCATGCTGCCGATCCTGCTA
** * * * * *
16903243 CCGTAACCCTCGATCCGGTTCGATCTTAGACTAGGAATGAACTCCGTTTGCTTAGACAT-GGAAT
325 CCACAACACTCGATCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGAAT
* * * **
16903307 GAACTCCGTATGCCTAAGCTAACCCATGAAACG-GGATTACGAGCGCTCAGTCGATCGGAGAGGC
389 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA-TACGAGCGCTCAACCGATCGGAGAGGC
* * * * **
16903371 AGAATGCACAAGCCGGGGATCGGTCCGGTC-CCC-C-T-CTGT-G-T-GCTGCCGAT-CTGCTAC
453 AGAATACACAAGCCGAGGATCAGCCCAATCTCCCTCGTGCTGTCGATCGCTGCCGATCCTGCTAC
* *
16903428 CACAACCTTCAGTCCGACTGGAGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
518 CACAACCCTCAGTCCGACTGGAGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
** * * *** * * **
16903493 AAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCAAGGATTGGCCCGAT
583 AAACGACCGTGCGAGCACTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGAT
* * *
16903558 CCC-GCTTGCGTGCTGCCGATCCTACTACCGCAA
648 CCCACCCTACGTGCTGCCGATCCTACTACCG-AA
* * * ** * *
16903591 CCTCCGGT-CCA-ATTCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
1 CCTAC--TACCACA-ACCATC-T-G-TCCGG--T---C--C-AAT-CTTAGACTGGGAATGAACT
* ** * *
16903654 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATG
51 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAATG
* * * * *
16903719 CGCAAGTCGAGGATCGGTTCGGTCCCCC-CTGCGTACTGCCGATCCTGCTGC
116 CACAAGACGGGGATCGGTTCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGC
16903770 TGGTCCTGCT
Statistics
Matches: 697, Mismatches: 131, Indels: 45
0.80 0.15 0.05
Matches are distributed among these distances:
671 20 0.03
672 123 0.18
673 14 0.02
674 2 0.00
675 1 0.00
676 4 0.01
677 1 0.00
678 5 0.01
679 1 0.00
681 1 0.00
683 8 0.01
684 133 0.19
685 383 0.55
686 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (680 bp):
CCTACTACCACAACCATCTGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAATGCACAAGACGGGGATC
GGTTCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAG
ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGCGCGGGCACTCAGCCGGTC
GAAGAGGCAGAATGCGAAAGCCAGGGATCAGCCCAGTCCCCCCTGCATGCTGCCGATCCTGCTAC
CACAACACTCGATCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACCGATCGGAGAGGCAGA
ATACACAAGCCGAGGATCAGCCCAATCTCCCTCGTGCTGTCGATCGCTGCCGATCCTGCTACCAC
AACCCTCAGTCCGACTGGAGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGACCGTGCGAGCACTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCC
ACCCTACGTGCTGCCGATCCTACTACCGAA
Found at i:16904034 original size:197 final size:195
Alignment explanation
Indices: 16903568--16904315 Score: 962
Period size: 196 Copynumber: 3.8 Consensus size: 195
16903558 CCCGCTTGCG
* * * * * *
16903568 TGCTGCCGATCCTACTACCGCAA-CCTCCGGTCCAATTCGATCTTAGATTGGGAATGAACTTCGT
1 TGCTGCTGGTCCTACTACCGCAACCCT-CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
* *
16903632 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
65 ATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * *
16903697 AGCCGACCGGAGAGGTAGAATGCGCAAG-TCGAGGATCGG-TTCGGTCCCCCCTGCGTACTGCCG
129 AGCCGACCGGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCCT-GGTCCCCCCTGCGTGCTGCCG
16903760 ATCC
192 ATCC
* * *
16903764 TGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTA
1 TGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
*
16903829 TGCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCA
66 TGCTTAGAC-TGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** *
16903894 GCCAACCAGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTAATCCCACCCTGCGTGCTGTCGAT
130 GCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTGGTCCC-CCCTGCGTGCTGCCGAT
16903959 CC
194 CC
* * * * *
16903961 TGTTGTTGGTCCTACTACCGCAACCATCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTA
1 TGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
16904026 TGCTTAGACTGGGATGAACTCCGTATGCCCTAAGTCAACCTACGAAACGAGCGTGCGAGCGCTCA
66 TGCTTAGACTGGGATGAACTCCGTATG-CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * * *
16904091 TCCGGTCGGAGAGGTAGAATGCGTAAACCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCAATC
130 GCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATC
16904156 C
195 C
** * * ** *
16904157 TGCTGCTGGTCCTGTTGCTGCAACCCTTTGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* *
16904222 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
66 TGCTTAGACTGGG-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
16904287 GCCGACTGGAGAGGCAGAAAGCGTAAGCT
130 GCCGACCGGAGAGGCAGAATGCGCAAGCT
16904316 AGGGACCAAC
Statistics
Matches: 477, Mismatches: 68, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
196 306 0.64
197 171 0.36
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (195 bp):
TGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCC
Found at i:16904051 original size:25 final size:26
Alignment explanation
Indices: 16904002--16904053 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16903992 CCGGTCCGAT
*
16904002 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16904028 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16904053 C
1 C
16904054 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16904166 original size:393 final size:393
Alignment explanation
Indices: 16903577--16904315 Score: 1119
Period size: 393 Copynumber: 1.9 Consensus size: 393
16903567 GTGCTGCCGA
* *
16903577 TCCTACTACCGCAACCTCCGGTCCAATTCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGAC
1 TCCTACTACCGCAACCTCCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* *
16903642 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGG
66 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGG
** * *
16903707 AGAGGTAGAATGCGCAAGTCGAGGATCGGTTCGGTCCCCCCTGCGTACTGCCGATCCTGCTGCTG
131 AGAGGTAGAATGCGCAAACCGAGGATCGGCTCGGTCCCCCCTGCGTACTGCCAATCCTGCTGCTG
*
16903772 GTCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA
196 GTCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
16903837 CATGGG-ATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAGCCAACC
261 C-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCAACC
*
16903901 AGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTAATCCCACCCTGCGTGCTGTCGATCCTGTTG
325 AGAGAGGCAGAAAGCGCAAGCTGAGGATCGGCCTAATCCCACCCTGCGTGCTGTCGATCCTGTTG
16903966 TTGG
390 TTGG
**
16903970 TCCTACTACCGCAACCAT-CGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAG
1 TCCTACTACCGCAACC-TCCGGTCCAATCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAG
* * **
16904033 ACT-GGGATGAACTCCGTATGCCCTAAGTCAACCTACGAAACGAGCGTGCGAGCGCTCATCCGGT
64 ACTGGGGATGAACTCCGTATG-CCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGAC
* * *
16904097 CGGAGAGGTAGAATGCGTAAACCGGGGATCGGC-CTGGTCCCCCCTGCGTGCTGCCAATCCTGCT
128 CGGAGAGGTAGAATGCGCAAACCGAGGATCGGCTC-GGTCCCCCCTGCGTACTGCCAATCCTGCT
* * ** *
16904161 GCTGGTCCTGTTGCTGCAACCCTTTGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
192 GCTGGTCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
16904226 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCG
257 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCA
** *
16904291 ACTGGAGAGGCAGAAAGCGTAAGCT
322 ACCAGAGAGGCAGAAAGCGCAAGCT
16904316 AGGGACCAAC
Statistics
Matches: 310, Mismatches: 31, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
392 24 0.08
393 285 0.92
394 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (393 bp):
TCCTACTACCGCAACCTCCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGG
AGAGGTAGAATGCGCAAACCGAGGATCGGCTCGGTCCCCCCTGCGTACTGCCAATCCTGCTGCTG
GTCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCAACCA
GAGAGGCAGAAAGCGCAAGCTGAGGATCGGCCTAATCCCACCCTGCGTGCTGTCGATCCTGTTGT
TGG
Found at i:16904227 original size:26 final size:26
Alignment explanation
Indices: 16904198--16904250 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16904188 TCGATCCGAT
16904198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16904224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16904250 C
1 C
16904251 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16904525 original size:159 final size:159
Alignment explanation
Indices: 16904224--16904588 Score: 360
Period size: 159 Copynumber: 2.3 Consensus size: 159
16904214 ACTCCGTATG
* * * *
16904224 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCACTAAGC
* * * * * *
16904289 CGACTGGAGAGGCAGAAAGCGTAAGCTAGGGACCAACCTGATCCCTACCTGCGTGCTATCGATTC
66 CGACCGGAGAGGCAGAAAGCGCAAGCTAGGGACCAACCTGATCCCCACCTGCATGCTACCGATCC
* *
16904354 TGCTACCGCAACCCTCAGTCCGATCCGAT
131 CGCTACCACAACCCTCAGTCCGATCCGAT
* * ** *
16904383 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTTCAGGCACTAAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCACTAAGC
* * *** * * * *
16904448 CGACCGGAGAGGCATAATGCGCAAGCT-GAGGATTGACCTGTTCCCCATCTGCATGCTGCCGGTC
66 CGACCGGAGAGGCAGAAAGCGCAAGCTAG-GGACCAACCTGATCCCCACCTGCATGCTACCGATC
* * * * **
16904512 CCGCTGCCACAACCCTCTA-TCTG-GCTAGGG
130 CCGCTACCACAACCCTC-AGTCCGATC-CGAT
* *
16904542 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACG
16904589 GGTGTGCGAG
Statistics
Matches: 166, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 2 0.01
159 161 0.97
160 3 0.02
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (159 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCACTAAGC
CGACCGGAGAGGCAGAAAGCGCAAGCTAGGGACCAACCTGATCCCCACCTGCATGCTACCGATCC
CGCTACCACAACCCTCAGTCCGATCCGAT
Found at i:16905117 original size:26 final size:26
Alignment explanation
Indices: 16905079--16905131 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16905069 CTGATCCGAT
16905079 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16905105 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16905131 C
1 C
16905132 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16905496 original size:158 final size:158
Alignment explanation
Indices: 16905105--16905497 Score: 590
Period size: 158 Copynumber: 2.5 Consensus size: 158
16905095 ACTCCATATG
* * * *
16905105 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * *
16905169 TCGACCGGAGAGGTAGAATGCGTAAGTCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCC
65 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
16905234 TGCTGCCGCAACCCTCGGTCCGGTCCGAT
130 TACTGCCGCAACCCTCGGTCCGATCCGAT
* * * *
16905263 CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGT
*
16905328 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
*
16905393 ACTGCCGCAACCCTCGGTCCGATTCGAT
131 ACTGCCGCAACCCTCGGTCCGATCCGAT
* * **
16905421 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATCCGGATGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGT
*
16905486 CGGCCGGAGAGG
66 CGACCGGAGAGG
16905498 TCGATCGAAG
Statistics
Matches: 209, Mismatches: 25, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
157 1 0.00
158 208 1.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGT
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
ACTGCCGCAACCCTCGGTCCGATCCGAT
Found at i:16905814 original size:26 final size:26
Alignment explanation
Indices: 16905776--16905828 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16905766 CCGATCCGAT
16905776 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16905802 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16905828 C
1 C
16905829 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16906111 original size:197 final size:196
Alignment explanation
Indices: 16905604--16906111 Score: 631
Period size: 197 Copynumber: 2.6 Consensus size: 196
16905594 TCCGACTGGG
* *
16905604 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
* * * * * *
16905669 CCGGTCGGAGAGGCAGAATGCATAAGCGGGGGATCGGCTCGGTCCTCCCCTGCATGCTGCCGATC
66 CCGGTCGGAGAGGCAGAATGCGTAAGC-CGGGATCGGCCCGGTCCCCCCCCGCATGCTACCGATC
* * **
16905734 TTGTTGCTGGTCCTGTTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCAT
130 CTGCTGCTGGTCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCAT
16905799 AT
195 AT
* * * * *
16905801 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGAGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
* * * * * * * *
16905866 CCAGCCGAAGAGGTAGAATGCGTAAGCTGGAGATCGACCCGATCCCCCCCCGCGTGCTACCGATC
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGG-GATCGGCCCGGTCCCCCCCCGCATGCTACCGATC
* * *
16905931 CTGCTGCTGGTCCTACTGTCGTAAGCCTCGATCC-AGTCTGATCTTAGACTGGGAATGAACTCCA
130 CTGCTGCTGGTCCTACTGTCGCAACCCTCGATCCGA-TCCGATCTTAGACTGGGAATGAACTCCA
16905995 TAT
194 TAT
* * * * *
16905998 GCTTAGACATGGAATCAACCCCGTCTGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
** * * *
16906063 TTGGTCGGAGAGGCAAAAAGCGCAAGCCGGGCATCGGCCCGGTCCCCCC
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGG-ATCGGCCCGGTCCCCCC
16906112 TACGTGCTGT
Statistics
Matches: 260, Mismatches: 48, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
196 4 0.02
197 256 0.98
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGATCGGCCCGGTCCCCCCCCGCATGCTACCGATCC
TGCTGCTGGTCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATA
T
Found at i:16906346 original size:159 final size:159
Alignment explanation
Indices: 16905998--16906463 Score: 553
Period size: 159 Copynumber: 2.9 Consensus size: 159
16905988 AACTCCATAT
* * *
16905998 GCTTAGACATGGAATCAAC-CCCGTCTGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
** * * *
16906062 GTTGGTCGGAGAGGCAAAAAGCGCAAGCCGGGCATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
16906127 CTACTGCCGCAACCCTCAG-TCTTGTTCGA
130 CTGCTGCCGCAACCCTCGGTTCTGGTTCGA
* * * * * * *
16906156 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGTGCGGGTACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * * * * * *
16906220 GCCGGCCGAAAAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCTCTCTGCGTGCTGTCGGT
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCCTGCGTGCTGTCGAT
* * * *
16906285 CCCGCTGCCACAACCCTCGGTTC-GGTTGGG
129 CCTGCTGCCGCAACCCTCGGTTCTGGTTCGA
* * * * *
16906315 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
*
16906380 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
*
16906445 TGCTGTCGCAACCCTCGGT
131 TGCTGCCGCAACCCTCGGT
16906464 CCAGTCTGAT
Statistics
Matches: 252, Mismatches: 51, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 120 0.48
159 128 0.51
160 3 0.01
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTTCTGGTTCGA
Found at i:16906510 original size:26 final size:26
Alignment explanation
Indices: 16906474--16906526 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16906464 CCAGTCTGAT
16906474 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16906500 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16906526 C
1 C
16906527 CCAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16906641 original size:184 final size:183
Alignment explanation
Indices: 16906315--16906782 Score: 661
Period size: 184 Copynumber: 2.6 Consensus size: 183
16906305 TTCGGTTGGG
* * * * * *
16906315 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGG-CACTC
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGA-TC
* * * *
16906378 AACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAAT
* * **
16906443 CCTGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
129 CATGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACT-CGTAT
* *
16906499 GCTTAGACTGGGGATGAACTCCGTATGCCCAAGTTAACCCATGAAACGAGCGTGCGGGTGATCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGATCAG
*
16906564 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCA
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCA
*
16906629 TGTTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCGTAT
131 TGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCGTAT
* * * *
16906682 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGATGCTTAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGATCAG
* * * *
16906747 CCGACCAGAGAGGCAGGATGCGCAAGTCGGGGATCG
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
16906783 AACGGGTGGT
Statistics
Matches: 253, Mismatches: 29, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
183 96 0.38
184 156 0.62
185 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (183 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGATCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCA
TGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCGTAT
Found at i:16906692 original size:25 final size:26
Alignment explanation
Indices: 16906658--16906709 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16906648 CCAGTCCAAT
16906658 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16906683 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16906709 C
1 C
16906710 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16907275 original size:26 final size:26
Alignment explanation
Indices: 16907246--16907298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16907236 CCGGTCCGAT
*
16907246 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
16907272 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
16907298 C
1 C
16907299 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:16908080 original size:26 final size:26
Alignment explanation
Indices: 16908051--16908104 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
16908041 TCCGATTTGA
16908051 GCTTAGACT-GGGAATGAACTCCGTAT
1 GCTTAGACTAGGG-ATGAACTCCGTAT
16908077 GCTTAGACTAGGGATGAACTCCGTAT
1 GCTTAGACTAGGGATGAACTCCGTAT
16908103 GC
1 GC
16908105 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
GCTTAGACTAGGGATGAACTCCGTAT
Found at i:16908821 original size:26 final size:26
Alignment explanation
Indices: 16908784--16908836 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16908774 GGCTCAAGCT
* *
16908784 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16908810 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16908836 C
1 C
16908837 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:16909163 original size:26 final size:26
Alignment explanation
Indices: 16909127--16909218 Score: 157
Period size: 26 Copynumber: 3.5 Consensus size: 26
16909117 CCGGTTCAAT
*
16909127 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16909153 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16909179 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16909205 CTTAGACTGGGAAT
1 CTTAGACTGGGAAT
16909219 CAACCCACAA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16909748 original size:29 final size:29
Alignment explanation
Indices: 16909706--16909765 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
16909696 TTGATCCGAC
*
16909706 TGGGGCTTAGACATGGAATGAACTCCTTA
1 TGGGGCTTAGACATGGAATGAACTCCCTA
16909735 TGGGGCTTAGACATGGAATGAACTCCCTA
1 TGGGGCTTAGACATGGAATGAACTCCCTA
16909764 TG
1 TG
16909766 CCTAAGCCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGGGCTTAGACATGGAATGAACTCCCTA
Found at i:16909943 original size:26 final size:26
Alignment explanation
Indices: 16909899--16909951 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16909889 CCGATCCGAT
16909899 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
16909925 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATAAACTCCATATG
16909951 C
1 C
16909952 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16910400 original size:346 final size:353
Alignment explanation
Indices: 16909737--16910378 Score: 768
Period size: 346 Copynumber: 1.8 Consensus size: 353
16909727 ACTCCTTATG
*
16909737 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGACGCTC
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGACGTGCGGACGCTC
* * *
16909802 AGCCCGTCGGAAAGGTAGAATGCACAAGTCTGGGGATCAACCCGGTCCCACTTACGTGCTGTCGA
66 AGCCAGTCCGAAAGGTAGAATGCACAAGTCTGGGGATCAACCCGGTCCCAC-T-CCTGCTGTCGA
* * *
16909867 TCCTGCTGTCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTCCATATGCTTAGAC
129 TCCTGATGTCG-AACCCTCGGTCCGATCCAATCTTAGACTGGGAATAAACTCCATATGCTTAAAC
* * * * * **
16909932 TGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTCAGCCGGTCGG
193 TGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCGACACTCAGCCGACCGG
* * ** ** *
16909997 AGAGGCATAATGCGTAACCCGAGGATTATTTCGGTCCCCTTCTGCATGCTGTCGATCCCACTACC
258 AGAGGCAGAATGCGCAACCCGAGGACGATCCCGATCCCCTTCTGCATGCTGTCGATCCCACTACC
16910062 AGTCCTGCTACCACAACCCTCGATTTGGCTA
323 AGTCCTGCTACCACAACCCTCGATTTGGCTA
* * *
16910093 GGGCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCATGAAATCAG-CGTGCGGGCGCT
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CAGACGTGCGGACGCT
* * * *
16910157 GAGCCAG-CCGAAGAGGTAGAATGCGCAAGTC-GGGGATCGACCCGGTCCC-C-CCTGCATGTTG
65 CAGCCAGTCCGAA-AGGTAGAATGCACAAGTCTGGGGATCAACCCGGTCCCACTCCTGC-TGTCG
* * * *
16910218 -T-C-GATG-C-AACCCTCGGTTCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAAAC
128 ATCCTGATGTCGAACCCTCGGTCCGATCCAATCTTAGACTGGGAATAAACTCCATATGCTTAAAC
* * *
16910278 ATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCCGACGCTTAGCCGACCG
193 -TGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCGACACTCAGCCGACCG
* * * * *
16910342 GAGGGGTAGAATGTGCAAGCCGGGGACCGA-CCCGATC
257 GAGAGGCAGAATGCGCAACCCGAGGA-CGATCCCGATC
16910379 GCACCTTGCA
Statistics
Matches: 241, Mismatches: 40, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
346 121 0.50
347 3 0.01
348 1 0.00
349 3 0.01
350 1 0.00
351 5 0.02
352 4 0.02
354 1 0.00
355 21 0.09
356 79 0.33
357 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (353 bp):
GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGACGTGCGGACGCTC
AGCCAGTCCGAAAGGTAGAATGCACAAGTCTGGGGATCAACCCGGTCCCACTCCTGCTGTCGATC
CTGATGTCGAACCCTCGGTCCGATCCAATCTTAGACTGGGAATAAACTCCATATGCTTAAACTGA
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCGACACTCAGCCGACCGGAGA
GGCAGAATGCGCAACCCGAGGACGATCCCGATCCCCTTCTGCATGCTGTCGATCCCACTACCAGT
CCTGCTACCACAACCCTCGATTTGGCTA
Found at i:16910557 original size:159 final size:156
Alignment explanation
Indices: 16910280--16910772 Score: 447
Period size: 159 Copynumber: 3.1 Consensus size: 156
16910270 GCTTAAACAT
* **
16910280 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCCGACGCTTAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTG-TTAGCCGACC-GAG
* * * * * * * * *
16910345 GGGTAGAATGTGCAAGCCGGGGACCGACCCGATCGCACCT-TGCATG-TCGTCGATCCTGCTACC
64 AGGCAAAATGCGCAAGCCGGGGATCGGCTCGATC-CACCTCTGCGTGCT-GTCGATCCTACTACC
*
16910408 GCAACCCTCGGTTTGATCCGATCCTAGACTG
127 GCAACCCTCGGTCTG-TCCGATCCTAGACTG
* * * * *
16910439 GGAATGAACTCTGTATGCCTAAGTCAACTCATGAAATGAGTGTGTGGGTGTTGAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGTT-AGCCGACC-GAG
* * * * * *
16910504 AGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGCGTGCTATCGATCCCACTACCAC
64 AGGCAAAATGCGCAAGCCGGGGATCGGCTCGATCCACCTCTGCGTGCTGTCGATCCTACTACCGC
* * * **
16910569 AACCCTCAGTCTGGCTGGGCCTTAGACAT-
129 AACCCTCGGTCTGTCCGATCC-TAGAC-TG
* * *
16910598 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTG-TTAGCCGACCG-AG
** * * * * *
16910663 AGGCAAAATGCATAAACCGGGGATTGGCTCGAT-CTCC-CTACGTGCTGTCGATCCTACTTCCGC
64 AGGCAAAATGCGCAAGCCGGGGATCGGCTCGATCCACCTCTGCGTGCTGTCGATCCTACTACCGC
* * * *
16910726 AACCCTAGGTCCGGTTCGATCTTAGACTG
129 AACCCTCGGT-CTGTCCGATCCTAGACTG
*
16910755 GAAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16910773 TTAGATTGGG
Statistics
Matches: 266, Mismatches: 59, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 51 0.19
158 18 0.07
159 193 0.73
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGTTAGCCGACCGAGAG
GCAAAATGCGCAAGCCGGGGATCGGCTCGATCCACCTCTGCGTGCTGTCGATCCTACTACCGCAA
CCCTCGGTCTGTCCGATCCTAGACTG
Found at i:16910775 original size:26 final size:25
Alignment explanation
Indices: 16910746--16910797 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16910736 CCGGTTCGAT
16910746 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACT-CGTATG
* **
16910772 CTTAGATTGGGGATGAACTCGTATG
1 CTTAGACTGGAAATGAACTCGTATG
16910797 C
1 C
16910798 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAAATGAACTCGTATG
Found at i:16911705 original size:159 final size:158
Alignment explanation
Indices: 16911456--16911766 Score: 383
Period size: 159 Copynumber: 2.0 Consensus size: 158
16911446 CTGATCCGAT
* * * * * *
16911456 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
16911521 CGACCGGAGAGGAATAATGCGCAAGCTAGGGATCGGCTC-GATCCCCCTCTGCGTGCTGTCGGTC
66 CGACCGGAGAGGAAGAATGCACAAGCCAGGGATCGGCCCAG-TCCCCC-CTACGTGCTGTCGATC
* *
16911585 CCGCTGCCACAACCCTCGGTCCGGCTGGGG
129 CCACTGCCACAACCCTCAGTCCGGCTGGGG
* *
16911615 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
16911679 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCAGTCTTCCCTACGTGCTGTCGATCC
65 CCGACCGGAGAGGAAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCC
*
16911744 TACTGCCACAACCCTCAGTCCGG
130 CACTGCCACAACCCTCAGTCCGG
16911767 TCCGATCTTA
Statistics
Matches: 128, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
158 35 0.27
159 91 0.71
160 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGAAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCCC
ACTGCCACAACCCTCAGTCCGGCTGGGG
Found at i:16911809 original size:26 final size:26
Alignment explanation
Indices: 16911773--16911825 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16911763 CCGGTCCGAT
16911773 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGATTGGGAATGAACTCT-GTATG
*
16911799 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
16911825 C
1 C
16911826 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTGTATG
Found at i:16912830 original size:26 final size:26
Alignment explanation
Indices: 16912801--16912853 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16912791 CCGGTCTGAT
16912801 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
* *
16912827 CTTAGATTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16912853 C
1 C
16912854 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16913561 original size:26 final size:26
Alignment explanation
Indices: 16913523--16913575 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16913513 CGCTCAAAAT
**
16913523 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16913549 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16913575 C
1 C
16913576 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:16913850 original size:159 final size:157
Alignment explanation
Indices: 16913549--16914051 Score: 444
Period size: 159 Copynumber: 3.2 Consensus size: 157
16913539 ACTCCGTATG
** * * * *
16913549 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGTGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAG-GCATGCGGGCGCTCAG
* * * * * * *
16913613 -CCGACC-AGAGAGGTAGAATGTGTAAGCCGGGGATCGGCTCGGTCCCTCCCTGCGTGCTGTCGA
65 CCCG-CCGA-AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCC-CTCTGAGTGCTGTCGA
* ** *
16913676 TCCTGCTGCTGCAACCCTCTGTCTGGTCTGAT
127 TCCTGCTACCACAACCCTC-GTCCGGTCTGAT
* * *
16913708 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAA-TGAGCATGCGGGCGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAG-GCATGCGGGCGCTCAG
* * * * * * * *
16913772 CCGGTCGAAGAGGCATAATGCGCAAGCCGTGGATCAGCCCGCTTCCCCTCTGATTGTTGTCGGT-
65 CCCGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCG-GTCCCCTCTGAGTGCTGTCGATC
* * **
16913836 CTCGTTGCCACAACCCTCGGTCCGG-CTGGGG
129 CT-GCTACCACAACCCTC-GTCCGGTCT-GAT
* * * *
16913867 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAGGCATGCGGGCGCTCAG
* * * *
16913931 CCCGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCC
65 CCCGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCTCTGAGTGCTGTCGATCC
* * *
16913996 TGCTACCGCAACCCTCGATCCGATCTAAT
130 TGCTACCACAACCCTCG-TCCGGTCTGAT
* *
16914025 TTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16914052 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 59 0.22
159 203 0.74
160 9 0.03
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAGGCATGCGGGCGCTCAGC
CCGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCTCTGAGTGCTGTCGATCCT
GCTACCACAACCCTCGTCCGGTCTGAT
Found at i:16914069 original size:26 final size:26
Alignment explanation
Indices: 16914026--16914077 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16914016 CGATCTAATT
* *
16914026 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
*
16914052 TTAGACTGGGGATAAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
16914078 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:16914803 original size:159 final size:158
Alignment explanation
Indices: 16914419--16914805 Score: 361
Period size: 158 Copynumber: 2.4 Consensus size: 158
16914409 AACTCCATAT
* * * * *
16914419 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * *
16914484 CAGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGATCCGATCCCCCCTGTGTGCTGTCAATCC
66 CCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCAGCGTGCTGTCAATCC
*** *
16914549 TGCTGCTGTAACCCTCGGTCCAGTCTGA
131 TGCTGCCACAACCCTCGGTCCAGGCTGA
* * ** ** * * *
16914577 TCTTACAC-TGAGAATGAACTCCGTATGCCTAAGTGAACCCACA-AAATAAGCGTACGGGTGCTG
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAACGAGCGTGCGGGCGCTC
* * * ** *
16914640 AGCCGATCAAAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGGTCCCTTTCAGCGTGCTGTCG
64 AGCCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCC-CCCAGCGTGCTGTCA
* *
16914704 AT-CTCGCTGCCACAACCCTCGGT-CTGGCTAGG
127 ATCCT-GCTGCCACAACCCTCGGTCCAGGCT-GA
* *
16914736 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
16914801 CCGAC
66 CCGAC
16914806 TGGCGAGGCA
Statistics
Matches: 175, Mismatches: 46, Indels: 15
0.74 0.19 0.06
Matches are distributed among these distances:
157 3 0.02
158 89 0.51
159 81 0.46
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
CCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCAGCGTGCTGTCAATCC
TGCTGCCACAACCCTCGGTCCAGGCTGA
Found at i:16914924 original size:26 final size:26
Alignment explanation
Indices: 16914895--16914947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16914885 TCGATCCGAT
16914895 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
16914921 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16914947 C
1 C
16914948 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16915215 original size:171 final size:171
Alignment explanation
Indices: 16914920--16915288 Score: 381
Period size: 171 Copynumber: 2.2 Consensus size: 171
16914910 AACTCCGTAT
* * * *
16914920 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGAGCTCAG
** * * * *
16914985 CCGACTGGAAAGGCATAATGCGTAAGTCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGCCGATC
66 CCGACCAGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATC
* * **
16915050 CTGCTGTCAGTCCTGTTACCACAACCCTCGGTCCGGATGGG
131 CAGCTGTCAGCCCTACTACCACAACCCTCGGTCCGGATGGG
* * *
16915091 GCTTAGAC-GTGGAATGAACTTTGTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGAGCTCA
1 GCTTAGACTG-GGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGAGCTCA
* * * * * **
16915155 GCCGGCCAGAGAGGTAGAATGCGCAAGCC-GAGGATCGGCCTGATCCCCC-CTTGTGTGCTGCCG
65 GCCGACCAGAAAGGCAGAATGCGCAAGCCAG-GGATCAGCCCGATCCCCCTC-TACGTGCTGCCG
** * * *
16915218 ATCCAGCTGTTGGCCCTACTGCCACAACCCTCGGTCC--ATTCGA
128 ATCCAGCTGTCAGCCCTACTACCACAACCCTCGGTCCGGA-TGGG
*
16915261 TCTTAGACTGGGAATGAAC-TCTGTATGC
1 GCTTAGACTGGGAATGAACTTC-GTATGC
16915289 TTAACATGGA
Statistics
Matches: 161, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
169 2 0.01
170 27 0.17
171 132 0.82
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGAGCTCAG
CCGACCAGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATC
CAGCTGTCAGCCCTACTACCACAACCCTCGGTCCGGATGGG
Found at i:16915683 original size:140 final size:140
Alignment explanation
Indices: 16915421--16915675 Score: 305
Period size: 140 Copynumber: 1.8 Consensus size: 140
16915411 GATCCTACTA
* * * *
16915421 CCACAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
1 CCACAACCCTCGGTCCGATCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * *
16915486 GAAACGAGTGTGCGGGCATTGAGCCGACTGCAGAGGCATAATGCGCAAGCCAGGGATCAACCCTC
66 GAAACGAGCGTACGGGCACTCAGCCGACCGCAGAGGCAGAATACGCAAGCCAGGGATCAACCCTC
16915551 GGTCCGACTG
131 GGTCCGACTG
* * *
16915561 CCACAACCCTCGGTCCGA-CTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACGCA
1 CCACAACCCTCGGTCCGATCT-GAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * ** * *
16915625 TGAAATGGGCGTACGGGTGCTCAGCCGGCCGGAGAGGCAGAATACGCAAGC
65 CGAAACGAGCGTACGGGCACTCAGCCGACCGCAGAGGCAGAATACGCAAGC
16915676 TGGGGATCGG
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
139 2 0.02
140 91 0.98
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.17
Consensus pattern (140 bp):
CCACAACCCTCGGTCCGATCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGCACTCAGCCGACCGCAGAGGCAGAATACGCAAGCCAGGGATCAACCCTC
GGTCCGACTG
Found at i:16916367 original size:11 final size:11
Alignment explanation
Indices: 16916351--16916380 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
16916341 TTAGGCTCTC
16916351 CGACGATGCTT
1 CGACGATGCTT
16916362 CGACGATGCTT
1 CGACGATGCTT
16916373 CGACGATG
1 CGACGATG
16916381 GTGCCCCGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (11 bp):
CGACGATGCTT
Found at i:16916488 original size:26 final size:26
Alignment explanation
Indices: 16916450--16916520 Score: 126
Period size: 26 Copynumber: 2.7 Consensus size: 26
16916440 GGCTCAAAAT
16916450 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16916476 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16916502 CTTAGACATGGAATGAACT
1 CTTAGACATGGAATGAACT
16916521 ACCCATGAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 43 0.98
27 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16916868 original size:12 final size:12
Alignment explanation
Indices: 16916853--16916878 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16916843 TGCATGCTAT
16916853 CAATCCTGCTGC
1 CAATCCTGCTGC
16916865 CAATCCTGCTGC
1 CAATCCTGCTGC
16916877 CA
1 CA
16916879 CAACCCTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.42, G:0.15, T:0.23
Consensus pattern (12 bp):
CAATCCTGCTGC
Found at i:16917109 original size:26 final size:26
Alignment explanation
Indices: 16917071--16917123 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16917061 TTGGCCTGAT
16917071 CTTAGACTAGGAATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* *
16917097 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACCCCGTATG
16917123 C
1 C
16917124 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:16917398 original size:159 final size:159
Alignment explanation
Indices: 16917097--16917599 Score: 421
Period size: 159 Copynumber: 3.2 Consensus size: 159
16917087 ACCCCGTATG
* * * * * * **** *
16917097 CTTAGACATGG-AATGAACTCTGTATGCCTAAACCAACCCATGAAATGAGCGTGCGTATGCTCTG
1 CTTAGAC-TGGAAATGAACTCCGCATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
16917161 TCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTGGACCCCCCCTGCGTGCTGGCAATC
65 TCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCTAG-TCCCCCCTGCGTGCTGTCGATC
* ** *
16917226 CTGCTGTTGCAACCCTCAGTCCGGTCT-GAT
129 CAGCTGCCGCAACCCTCAGTCCGATCTCGAT
* * * *
16917256 CTTAGACTGGGAATGAACTCCGCATGCCTAA-CTCAACCCACGAAACGAGCGTTCGGGCGCTGAG
1 CTTAGACTGGAAATGAACTCCGCATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
16917320 -CTGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCTAGTCCCCCTCTGCGTGCTGTCGGT
65 TC-GACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCTAGTCCCCC-CTGCGTGCTGTCGAT
* * * * * **
16917384 CCCGCTGCCACAACCATCAGTCC-AACTGGGG
128 CCAGCTGCCGCAACCCTCAGTCCGATCTCGAT
* * *
16917415 CTTAGACAT-GCAATGAACTCC-CTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCATTCA
1 CTTAGAC-TGGAAATGAACTCCGC-ATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * *
16917478 GTCGACCGCAGAGGTAAAATGCGCAAGCCGGGGATCAGCCCGA-TCCCTCCTGCATGATGTCGAT
64 GTCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATC-GACCTAGTCCCCCCTGCGTGCTGTCGAT
* *
16917542 CCAGCTACCGCAACCCTCAATCCGAT-TCGAT
128 CCAGCTGCCGCAACCCTCAGTCCGATCTCGAT
*
16917573 CTTAGACTGGAAATGAACTCCGTATGC
1 CTTAGACTGGAAATGAACTCCGCATGC
16917600 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 57, Indels: 27
0.77 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 67 0.24
159 198 0.72
160 8 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGAAATGAACTCCGCATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAGT
CGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTCGATCCA
GCTGCCGCAACCCTCAGTCCGATCTCGAT
Found at i:16918613 original size:159 final size:158
Alignment explanation
Indices: 16918329--16918627 Score: 329
Period size: 159 Copynumber: 1.9 Consensus size: 158
16918319 GCTTAGACAT
* * * *
16918329 GGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGA
1 GGAATGAACTCGTATGCATAAGCCAACCCACGAAACAAACGTGCGGCCGCTCAGCCGACCAGAGA
* * * **
16918394 GGCAGAATGCACAAGCCAGGGATCGACCTGATTCCCCCCTGCGTGCTGTCGATCCTGCTACTGCA
66 GGCAGAATACACAAGCCAGGGATCGACCTGATTCCCCCCTACGTGCTGTCGATCCCGCTACCACA
*
16918459 ACCCTTGGTCCGATCTGATATTAGATTG
131 ACCCTCGGTCCGATCTGATATTAGATTG
** * *
16918487 GGAATGAACTCCGTATGCATAATTCAACCCACGAAACAAACGTGCGGCCGCTGAGTCGACC-GAA
1 GGAATGAACT-CGTATGCATAAGCCAACCCACGAAACAAACGTGCGGCCGCTCAGCCGACCAG-A
* * * * * *
16918551 GTGGCATAATACGCAAGCC-GAGGATC-AGCTCGA-TCCCCCTCTATGTGCTG-CTGGTCCCGCT
64 GAGGCAGAATACACAAGCCAG-GGATCGACCT-GATTCCCCC-CTACGTGCTGTC-GATCCCGCT
16918612 ACCACAACCCTCGGTC
125 ACCACAACCCTCGGTC
16918628 TGGCTGGGGC
Statistics
Matches: 115, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
158 22 0.19
159 93 0.81
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCGTATGCATAAGCCAACCCACGAAACAAACGTGCGGCCGCTCAGCCGACCAGAGA
GGCAGAATACACAAGCCAGGGATCGACCTGATTCCCCCCTACGTGCTGTCGATCCCGCTACCACA
ACCCTCGGTCCGATCTGATATTAGATTG
Found at i:16918824 original size:26 final size:26
Alignment explanation
Indices: 16918795--16918847 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16918785 CCAGTCCGAT
16918795 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16918821 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16918847 C
1 C
16918848 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16919198 original size:26 final size:26
Alignment explanation
Indices: 16919160--16919212 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16919150 CCGGTTCGAT
16919160 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
16919186 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACCCCGTATG
16919212 C
1 C
16919213 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:16919698 original size:26 final size:26
Alignment explanation
Indices: 16919662--16919713 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16919652 CTGGTCGGAT
16919662 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16919688 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16919714 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16920305 original size:11 final size:11
Alignment explanation
Indices: 16920289--16920318 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
16920279 AGGTTAGGCT
16920289 CTCCGACGACG
1 CTCCGACGACG
*
16920300 CTCCGACGATG
1 CTCCGACGACG
16920311 CTCCGACG
1 CTCCGACG
16920319 GTGGTGCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.43, G:0.27, T:0.13
Consensus pattern (11 bp):
CTCCGACGACG
Found at i:16920431 original size:26 final size:26
Alignment explanation
Indices: 16920391--16920443 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16920381 GGCTCAAAAT
16920391 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16920417 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
16920443 C
1 C
16920444 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16920716 original size:159 final size:159
Alignment explanation
Indices: 16920426--16920848 Score: 376
Period size: 159 Copynumber: 2.7 Consensus size: 159
16920416 GCTTAGACAT
* * * * * *
16920426 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACAAAAAGAGCGTGCGGGCGCTCAGCCAGACGAAG
* * * ** *
16920491 AGGCAGAATGCACAAGCCGGGGATCGCCCCAGTCCCCCCTTGCGAGCTATCGATCTTGTAGTCAC
66 AGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTTACGAGCTACCGATCCCGTAGCCAC
16920556 AACCCTCAGTTCGGTCTGATCTGAGATTG
131 AACCCTCAGTTCGGTCTGATCTGAGATTG
* *
16920585 GGAATGAACTCCGTATGCATAAGTCAACCCACAAAAAGAGCGTGCGGGCGCTGAGCCAGACGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACAAAAAGAGCGTGCGGGCGCTCAGCCAGACGAAG
* * * * *
16920650 AGGCATAATGCGCAA-CTCGGGGATCGACCCGGT-TCCCCTCTAC-ATGCTACCGGTCCCGCT-G
66 AGGCAGAATGCACAAGC-CGGGGATCGACCCAGTCCCCCCT-TACGA-GCTACCGATCCCG-TAG
* ** * *
16920711 CCACAACCCTCAGTCCGG-CTAGGGCTTAGACAT-
127 CCACAACCCTCAGTTCGGTCT-GATCTGAGA-TTG
* * ** * * * * *
16920744 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGTGGGTGTTCAGCC-GACCGG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACAAAAAGAG-CGTGCGGGCGCTCAGCCAGA-CGA
* * * * *
16920807 AGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCCT
64 AGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCT
16920849 GCGTGCTGGC
Statistics
Matches: 214, Mismatches: 40, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
158 12 0.06
159 195 0.91
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACAAAAAGAGCGTGCGGGCGCTCAGCCAGACGAAG
AGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTTACGAGCTACCGATCCCGTAGCCAC
AACCCTCAGTTCGGTCTGATCTGAGATTG
Found at i:16920941 original size:24 final size:25
Alignment explanation
Indices: 16920895--16920941 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
16920885 GACCCAATCC
*
16920895 TAGACTGGGAATGAACTCTGTATCT
1 TAGACTGGGAATGAACTCCGTATCT
16920920 TAGACTGGG-ATGAACTCCGTAT
1 TAGACTGGGAATGAACTCCGTAT
16920942 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (25 bp):
TAGACTGGGAATGAACTCCGTATCT
Done.