Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 144 of 402
Found at i:16921354 original size:158 final size:157
Alignment explanation
Indices: 16921086--16921589 Score: 484
Period size: 158 Copynumber: 3.2 Consensus size: 157
16921076 CCGGCTGGGG
* *
16921086 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCT-AGC
* * *
16921151 CGGCC-AGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCC-AGTCCCCCTTGCATGCTATCGATC
65 CAGCCGAGAGAGGCAGAATGCGTAAG-CAGGGATCGGCCCGA-TCCCCCTTGCGTGCTATCGATC
16921214 CTGCTGCCGCAACCCTCGGTCCGGTCCGAT
128 CTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * *
16921244 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCT-AG
* ** * * ** *
16921308 CCAGCCGA-AGAGGCATAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGGT
64 CCAGCCGAGAGAGGCAGAATGCGTAAGC-AGGGATCGGCCCGATCCCCCT-TGCGTGCTATCGAT
* * * * **
16921372 CCCGCTGCCACAACCCTCGGTCCTG-CTGGGG
127 CCTGCTGCCGCAACCCTCGGTCCGGTC-CGAT
* * * * *
16921403 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTG-GCGAGCT-CCC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTAGCC
* * * * * *
16921466 AACCGGTCAGAGAGGTAGAATGCGTAAGCCGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATC
66 AGCC-G--AGAGAGGCAGAATGCGTAAGCAGGGATCGGCCCGATCCCCCTTGCGTGCTATCGATC
* * *
16921531 CTGCTGCCAGGTAACCTTCGGTCTGGTCCGAT
128 CTGCTGCC--GCAACCCTCGGTCCGGTCCGAT
16921563 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16921590 TTAGACTGTG
Statistics
Matches: 274, Mismatches: 57, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
156 5 0.02
157 3 0.01
158 116 0.42
159 97 0.35
160 52 0.19
161 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTAGCC
AGCCGAGAGAGGCAGAATGCGTAAGCAGGGATCGGCCCGATCCCCCTTGCGTGCTATCGATCCTG
CTGCCGCAACCCTCGGTCCGGTCCGAT
Found at i:16921514 original size:317 final size:322
Alignment explanation
Indices: 16920416--16921589 Score: 1020
Period size: 351 Copynumber: 3.6 Consensus size: 322
16920406 AACTCCGTAT
* * * * *
16920416 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCCCAA
* * ** ** *
16920481 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGCCCCAGTCCCCCCTTGCGA-GCTATCGAT
66 CCGGCCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCAGTCCCCCC-TGC-ATGCTATCGAT
* * * * * * *
16920545 CTTG-TAGTCA-CAACCCTCAGTTCGGTCTGATCTGAGATTGGGAATGAACTCCGTATGCATAAG
129 CCTGCT-GCCAGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAG
* * * * ** * * * * *
16920608 TCAACCCACAAAAAGAGCGTGCGGGCGCTGAGCCAGACGAAGAGGCATAATGCGCAACTCGGGGA
193 TCAACCAACGAAACGAGCATGCGGGTACTCAGCCAGCCGAAGAGGCATAATGCACAAGTCAGGGA
* * * * * *
16920673 TC-GACCCGGTTCCC-CT-C-TAC--ATGCTACCGGTCCCGCTGCCACAACCCTCAGTCCGGCTA
258 TCAG-CCCGATCCCCTCTGCGTGCTGCTGCTGCCGGTCCCG-TGCCACAACCCTCAGTCCGGCTG
16920732 GG
321 GG
* ** * * **
16920734 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGTGGGTGTTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTACGAGCGCCCA
* * * * * * * * **
16920798 GCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGGCGATC
65 ACCGGCCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCAGTCCCCCCTGCATGCTATCGATC
* *
16920863 CTGCTACC-GCAACCCTTGGTCCGACCCAATCCTAGACTGGGAATGAACTCTGTATCTTAGACTG
130 CTGCTGCCAGCAACCC----T-CG-----GT-C----C--GG--T---C-C-G-ATCTTAGACTG
* * * *
16920927 GG-ATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGTGGGTACTCAGCCAGTCGGAG
170 GGAATGAACTCCGTATGCATAAGTCAACCAACGAAACGAGCATGCGGGTACTCAGCCAGCCGAAG
**
16920991 AGGCATAATGTGCAAGTCAGGGATCAGCCCGATCCCCTCTGCGTGCTGCCAATCCTGCTGCCGGT
235 AGGCATAATGCACAAGTCAGGGATCAGCCCGATCCCCTCTGCGTGCTG------CTGCTGCCGGT
* * *
16921056 CCTGTGCCACAACCTTCATTCCGGCTGGG
294 CCCGTGCCACAACCCTCAGTCCGGCTGGG
* * * *
16921085 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCCCAA
*
16921150 CCGGCCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCAGTCCCCCTTGCATGCTATCGATCC
66 CCGGCCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCAGTCCCCCCTGCATGCTATCGATCC
*
16921215 TGCTGCC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
131 TGCTGCCAGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * * *
16921279 ACCCACGAAATGAGCGTGCGGGTGCTGAGCCAGCCGAAGAGGCATAATGCACAAG-CTGGGGATC
196 ACCAACGAAACGAGCATGCGGGTACTCAGCCAGCCGAAGAGGCATAATGCACAAGTC-AGGGATC
* *
16921343 AGCCCGATCCCC-CT-C-TGC-G-TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCTGCTGGG
260 AGCCCGATCCCCTCTGCGTGCTGCTGCTGCCGGTCCCG-TGCCACAACCCTCAGTCCGGCTGGG
* * * *
16921402 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGGCGAGCTCCCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGT-ACGAGCGCCCA
* * * * * *
16921467 ACCGGTCAGAGAGGTAGAATGCGTAAGCC-GGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATC
65 ACCGGCCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCAGTCCCCCCTGCATGCTATCGATC
* * *
16921531 CTGCTGCCAGGTAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
130 CTGCTGCCA-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
16921590 TTAGACTGTG
Statistics
Matches: 706, Mismatches: 102, Indels: 95
0.78 0.11 0.11
Matches are distributed among these distances:
316 13 0.02
317 130 0.18
318 134 0.19
319 45 0.06
321 1 0.00
322 1 0.00
323 1 0.00
324 3 0.00
325 1 0.00
326 16 0.02
327 86 0.12
328 1 0.00
329 1 0.00
332 2 0.00
334 4 0.01
336 2 0.00
339 1 0.00
340 1 0.00
341 83 0.12
342 14 0.02
343 1 0.00
344 2 0.00
346 2 0.00
347 1 0.00
351 147 0.21
352 13 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (322 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCCCAA
CCGGCCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCAGTCCCCCCTGCATGCTATCGATCC
TGCTGCCAGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
ACCAACGAAACGAGCATGCGGGTACTCAGCCAGCCGAAGAGGCATAATGCACAAGTCAGGGATCA
GCCCGATCCCCTCTGCGTGCTGCTGCTGCCGGTCCCGTGCCACAACCCTCAGTCCGGCTGGG
Found at i:16921592 original size:26 final size:26
Alignment explanation
Indices: 16921563--16921615 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16921553 CTGGTCCGAT
*
16921563 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGTGG-ATGAAATCCGTATG
*
16921589 CTTAGACTGTGGATGAAATCTGTATG
1 CTTAGACTGTGGATGAAATCCGTATG
16921615 C
1 C
16921616 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGTGGATGAAATCCGTATG
Found at i:16928126 original size:159 final size:159
Alignment explanation
Indices: 16927716--16928211 Score: 431
Period size: 159 Copynumber: 3.2 Consensus size: 159
16927706 CTCAAAATCA
* *
16927716 TAGAC-GGGAATGAACT-CGTATGCCTAAGCCAACCCATG-AATGAGCGTGCGGGCACTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCTG
** * ** * *
16927778 ATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGAT-TCCCCCTGCGAGCTGTCGATCCTG
66 GCCGAAGAGGTAGAATGCGCAAGCTAGGGATCGGCCCGGTCTCCCCCTGCGAGCTGCCGATCCTG
* * *
16927842 CTGCCTCAACCCTCAGTTCGGTTCAATCT
131 CTGCCACAACCCTCAGTTCGGCTCAAGCT
* * * * ** *
16927871 TAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACAAGCGTGTAGGCACTAAG-TG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCTG
** * * * * * *
16927935 GACCGAAGAGACATAATGTGCAAG-TCAGGGATCAGCCCGGTCTGCCTCTGC-ATGCTGCCGGTC
66 G-CCGAAGAGGTAGAATGCGCAAGCT-AGGGATCGGCCCGGTCTCCCCCTGCGA-GCTGCCGATC
* * ***
16927998 CTGCTGCCACAACCCT-TGGTCTGGCTGGGGCT
128 CTGCTGCCACAACCCTCAGTTC-GGCTCAAGCT
* * * *
16928030 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCT
1 TAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCT
* * * * *
16928094 GGCCGAAGAGGTAGAATGCGCAAGCTAGGGATCGGCTCGG--TCCCCCTACGTGTTACCGATCCT
65 GGCCGAAGAGGTAGAATGCGCAAGCTAGGGATCGGCCCGGTCTCCCCCTGCGAGCTGCCGATCCT
* * * *
16928157 ACTGCCACAACCCTCGGTTCGG-TCTGATCT
130 GCTGCCACAACCCTCAGTTCGGCTC-AAGCT
* *
16928187 TAGACAGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16928212 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 65, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
155 5 0.02
156 12 0.05
157 74 0.28
158 51 0.20
159 114 0.44
160 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCTG
GCCGAAGAGGTAGAATGCGCAAGCTAGGGATCGGCCCGGTCTCCCCCTGCGAGCTGCCGATCCTG
CTGCCACAACCCTCAGTTCGGCTCAAGCT
Found at i:16928214 original size:26 final size:26
Alignment explanation
Indices: 16928185--16928237 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16928175 TCGGTCTGAT
*
16928185 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
16928211 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
16928237 C
1 C
16928238 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:16928599 original size:26 final size:26
Alignment explanation
Indices: 16928561--16928613 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16928551 CCTATCCGAT
*
16928561 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16928587 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16928613 C
1 C
16928614 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16929094 original size:26 final size:26
Alignment explanation
Indices: 16929043--16929095 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16929033 CCAGTTCGAT
**
16929043 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16929069 CTTAGACT-GGAGATGAACTCCATATG
1 CTTAGACTGGGA-ATGAACTCCATATG
16929095 C
1 C
16929096 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16930660 original size:26 final size:26
Alignment explanation
Indices: 16930622--16930674 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16930612 CTGGTTCGAT
16930622 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16930648 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16930674 C
1 C
16930675 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16930847 original size:26 final size:26
Alignment explanation
Indices: 16930808--16930858 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16930798 GATCCGATCC
*
16930808 TAGACTGGGAATGAACTCCTTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
16930834 TAGACTGAGG-ATGAACTCCATATGC
1 TAGACTG-GGAATGAACTCCATATGC
16930859 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:16931513 original size:26 final size:26
Alignment explanation
Indices: 16931475--16931527 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16931465 GGCTCAAAAT
16931475 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
**
16931501 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACACCATATG
16931527 C
1 C
16931528 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:16931699 original size:26 final size:26
Alignment explanation
Indices: 16931658--16931710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16931648 CCGGTTTGAT
16931658 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
16931684 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
16931710 C
1 C
16931711 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:16932419 original size:26 final size:26
Alignment explanation
Indices: 16932381--16932433 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16932371 GGCTCAAAAT
16932381 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16932407 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16932433 C
1 C
16932434 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16932615 original size:26 final size:26
Alignment explanation
Indices: 16932577--16932655 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
16932567 CCAGTCTGAT
16932577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16932603 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
*
16932629 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16932655 C
1 C
16932656 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 1 0.02
26 48 0.96
27 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16933521 original size:26 final size:26
Alignment explanation
Indices: 16933485--16933537 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16933475 CCGATCCAAT
*
16933485 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
16933511 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
16933537 C
1 C
16933538 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:16934582 original size:159 final size:158
Alignment explanation
Indices: 16934220--16934673 Score: 380
Period size: 159 Copynumber: 2.9 Consensus size: 158
16934210 CAATCCATAT
* **
16934220 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGAGGGCACTCAG
* *** * **
16934285 TCGACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCAATCC
66 CCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTACCAATCC
* * *
16934350 TACTGCCCCAACCCTCAGCCCGGTCCGA
131 TACTACCACAACCCTCAGCCCGCTCCGA
* * * * * * * *
16934378 TCTTAGA-TTGGGACTGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGAGGGCACTCA
* * **
16934442 GCCGGCCAAAGAGGCATAATGCGCAAGCCGGGGATCGGC-CTGATCCCCCTCTGCGTGCTACCGG
65 GCCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GATCCCCC-CTGCGTGCTACCAA
* * * * * *
16934506 T-CTCGCTACCATAACCCTCAGTCTGACT-GGG
128 TCCT-ACTACCACAACCCTCAGCCCG-CTCCGA
* *** * * *
16934537 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTCCA-AGCCCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGT-GAGGGCACTCA
* ** * * * * * *
16934601 GCCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCTG-TCCCCCCAGCATGCTACCGAT
65 GCCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GATCCCCCCTGCGTGCTACCAAT
16934665 CCTACTACC
129 CCTACTACC
16934674 GTAACCCTTG
Statistics
Matches: 232, Mismatches: 55, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 110 0.47
159 115 0.50
160 5 0.02
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGAGGGCACTCAG
CCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTACCAATCC
TACTACCACAACCCTCAGCCCGCTCCGA
Found at i:16934732 original size:26 final size:26
Alignment explanation
Indices: 16934696--16934748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16934686 CCGGTCTAAT
*
16934696 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16934722 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16934748 C
1 C
16934749 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16935794 original size:26 final size:27
Alignment explanation
Indices: 16935742--16935795 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
16935732 CTGGTCTGAT
* *
16935742 CTTAGACTGGGAAATGAACTTTGTATG
1 CTTAGACTGGGAAATAAACTCTGTATG
*
16935769 CTTAGACTGGG-GATAAACTCTGTATG
1 CTTAGACTGGGAAATAAACTCTGTATG
16935795 C
1 C
16935796 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAAATAAACTCTGTATG
Found at i:16936493 original size:26 final size:26
Alignment explanation
Indices: 16936451--16936503 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16936441 GGCTCAAAGT
*
16936451 CTTAGACTGGGAGTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16936477 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16936503 C
1 C
16936504 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16936797 original size:158 final size:157
Alignment explanation
Indices: 16936476--16936813 Score: 371
Period size: 158 Copynumber: 2.1 Consensus size: 157
16936466 AACTCCATAT
* * *
16936476 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * *
16936541 CCGACTGGAAAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCATCTGCATGCTACCGGTC
66 CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCA-CTGCATGCTACCGATC
* * *
16936606 CCTCTGCAACAACCCTCGTCTGGTTGGG
130 CCTCTGCAACAACCCTCGTCCGATTGGA
* * *
16936634 GCTTAGACATGGAATGAACTCCCTAT-TCTGAAGCCAACCCATGAAACGGGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCT-AAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * *
16936698 ACCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCTCCC-CTGCGTGCTACTGAT
65 ACCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC-CCCACTGCATGCTACCGAT
* * *
16936762 -CCTACTATC-GCAACCCTCGGTCCGATTTGA
129 CCCT-CT-GCAACAACCCTC-GTCCGATTGGA
*
16936792 TCTTAGAC-TGGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
16936814 GTAGCTTAGA
Statistics
Matches: 151, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
156 3 0.02
157 25 0.17
158 120 0.79
159 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCACTGCATGCTACCGATCC
CTCTGCAACAACCCTCGTCCGATTGGA
Found at i:16936978 original size:84 final size:84
Alignment explanation
Indices: 16936826--16936979 Score: 202
Period size: 84 Copynumber: 1.8 Consensus size: 84
16936816 AGCTTAGACT
* * ** *
16936826 GAGGATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGTCGGA
1 GAGGATGAATCTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACGCTCAGCCGACCGAA
16936891 GAGGCAGAATGCGCAAGCC
66 GAGGCAGAATGCGCAAGCC
* * * * *
16936910 GAGGATGAA-CTCTGTATGCCTAAGTCAACCTACGAAGCGAGCATGCGTATGCTTAGCCGACCGA
1 GAGGATGAATCTC-GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACGCTCAGCCGACCGA
16936974 AGAGGC
65 AGAGGC
16936980 TGGTCGGAGA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
83 2 0.03
84 57 0.97
ACGTcount: A:0.28, C:0.25, G:0.31, T:0.16
Consensus pattern (84 bp):
GAGGATGAATCTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACGCTCAGCCGACCGAA
GAGGCAGAATGCGCAAGCC
Found at i:16937283 original size:26 final size:26
Alignment explanation
Indices: 16937245--16937297 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16937235 CCGATCCGAT
16937245 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16937271 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16937297 C
1 C
16937298 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16937763 original size:26 final size:26
Alignment explanation
Indices: 16937734--16937783 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16937724 TCGGTCCGAT
16937734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16937760 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
16937784 GGCCTATGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16938152 original size:26 final size:26
Alignment explanation
Indices: 16938114--16938166 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16938104 CCGATCCGAT
16938114 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
16938140 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCATATG
16938166 C
1 C
16938167 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:16938512 original size:159 final size:159
Alignment explanation
Indices: 16938139--16938523 Score: 434
Period size: 158 Copynumber: 2.4 Consensus size: 159
16938129 AACTCCATAT
* * *
16938139 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGGGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
16938204 TCGGCCGGAGAGGCAAAATATGCAAGCCAGGGACCGGCTCGGTTCCCCCTTGCGTGCTATCGATC
66 CCGACCGAAGAGGCAAAATAGGCAAGCCAGGGACCGACTCCGATCCCCCTTGCGTGCTATCGATC
*** *
16938269 TTGCTACCGCAACCCTCGGTCCGGTCCGA
131 CCACTACCACAACCCTCGGTCCGGTCCGA
* * * * *
16938298 TCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
16938362 CCGACCGAAGAGGCATAATGGGCAAGCCGGGGATCGAC-CCGATCCCCCTCTGTGTGCTGTCGGT
66 CCGACCGAAGAGGCAAAATAGGCAAGCCAGGGACCGACTCCGATCCCCCT-TGCGTGCTATCGAT
* * * *
16938426 CCCACTGCCACAACCCTCGGTTCGG-CTGGG
130 CCCACTACCACAACCCTCGGTCCGGTC-CGA
* * *
16938456 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
16938521 CCG
66 CCG
16938524 GTCTGAGAGG
Statistics
Matches: 185, Mismatches: 38, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
157 10 0.05
158 116 0.63
159 59 0.32
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGACCGAAGAGGCAAAATAGGCAAGCCAGGGACCGACTCCGATCCCCCTTGCGTGCTATCGATC
CCACTACCACAACCCTCGGTCCGGTCCGA
Found at i:16938568 original size:159 final size:158
Alignment explanation
Indices: 16938139--16938577 Score: 399
Period size: 158 Copynumber: 2.8 Consensus size: 158
16938129 AACTCCATAT
* * *
16938139 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGGGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* ** * * *
16938204 TCGG-CCGGAGAGGCAAAATATGCAAGCCAGGGACCGG-CTCGGTTCCCCCT-TGCGTGCTATCG
66 CCGGACC-GAGAGGCAAAATGCGCAAGCGA-GGATCGGAC-CGG-ACCCCCTCTGCGTGCTATCG
*** *
16938266 ATCTTGCTACCGCAACCCTCGGTCCGGTCCGA
127 ATCCCACTACCACAACCCTCGGTCCGGTCCGA
* * * * *
16938298 TCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
16938362 CC-GACCGAAGAGGCATAATGGGCAAGCCGGGGATC-GACCCGATCCCCCTCTGTGTGCTGTCGG
66 CCGGACCG-AGAGGCAAAATGCGCAAG-CGAGGATCGGACCGGA-CCCCCTCTGCGTGCTATCGA
* * * *
16938425 TCCCACTGCCACAACCCTCGGTTCGG-CTGGG
128 TCCCACTACCACAACCCTCGGTCCGGTC-CGA
* * *
16938456 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * **
16938521 CCGGTCTGAGAGGCAGAATGCGCGAGCTGAGGATCGGGGCGGACCCCC-CTGCGTGCT
66 CCGGACCGAGAGGCAAAATGCGCAAGC-GAGGATCGGACCGGACCCCCTCTGCGTGCT
16938578 TCCGATCTTA
Statistics
Matches: 223, Mismatches: 46, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
157 12 0.05
158 119 0.53
159 85 0.38
160 7 0.03
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGACCGAGAGGCAAAATGCGCAAGCGAGGATCGGACCGGACCCCCTCTGCGTGCTATCGATCC
CACTACCACAACCCTCGGTCCGGTCCGA
Found at i:16938949 original size:9 final size:9
Alignment explanation
Indices: 16938935--16938969 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
16938925 TTAGAAAGAG
16938935 TTTCACAAT
1 TTTCACAAT
16938944 TTTCACAAT
1 TTTCACAAT
16938953 TTTCAC--T
1 TTTCACAAT
16938960 TTTCACAAT
1 TTTCACAAT
16938969 T
1 T
16938970 GTTGGCATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.29
9 17 0.71
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.49
Consensus pattern (9 bp):
TTTCACAAT
Found at i:16939370 original size:26 final size:26
Alignment explanation
Indices: 16939333--16939385 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16939323 GGCTCAAACT
*
16939333 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
16939359 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16939385 C
1 C
16939386 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:16939884 original size:26 final size:26
Alignment explanation
Indices: 16939855--16939907 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16939845 CCGATCTGAT
*
16939855 CTTAGAC-TGGGAATGATCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16939881 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16939907 C
1 C
16939908 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16939993 original size:184 final size:182
Alignment explanation
Indices: 16939517--16940065 Score: 612
Period size: 184 Copynumber: 3.0 Consensus size: 182
16939507 TCTGAATGGG
* * * *
16939517 GCTTAGACGTGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* ** * * * * * *
16939582 CCGGTCGGAGAGGCAGAATGCGCAAGTTGGGGATC-AGCTCGGTCCACCCTGCGTACTGTTGATC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATC
* * *
16939646 CTACTACCGCAACCCTCAGTCCAGT-TCAATCTTAGACTGGGAAGGAGCTTCGTAT
129 CTGCTACCGCAACCCTCAGTCC-GTCT-GATCTTAGACTGGGAATGAGCTTCGTAT
* *
16939701 GCTTAGACTGGGGATGAACTCTGTATGCCT-----AACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* ** ** * *
16939761 CCGACCAAAGAGGCAGAATGATCAAGCCGAGGATCGGCCC-AGTCCCCCCCGCGTGCTGTCGATC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA-TCCCCCCTGCGTGCTGTCGATC
* * * * * * *
16939825 CTGTTGCTGCAAGCCTCAATCCGATCTGATCTTAGACTGGGAATGATCTCCGTAT
129 CTGCTACCGCAACCCTCAGTCCG-TCTGATCTTAGACTGGGAATGAGCTTCGTAT
* **
16939880 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAAGCGTGCGGGCACTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGTGCTCA
*
16939944 GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATC
64 GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
*
16940009 CTGCTACCGCAACCCTCGGTCCCGTCTGATCTTAGACTGGGAATGAGCTTCGTAT
129 CTGCTACCGCAACCCTCAGT-CCGTCTGATCTTAGACTGGGAATGAGCTTCGTAT
16940064 GC
1 GC
16940066 CTAAGTCAAC
Statistics
Matches: 298, Mismatches: 53, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
178 1 0.00
179 141 0.47
180 2 0.01
183 2 0.01
184 148 0.50
185 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (182 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCAGTCCGTCTGATCTTAGACTGGGAATGAGCTTCGTAT
Found at i:16940143 original size:158 final size:158
Alignment explanation
Indices: 16939881--16940375 Score: 597
Period size: 159 Copynumber: 3.1 Consensus size: 158
16939871 TCTCCGTATG
* *
16939881 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAAGCGTGCGGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG-AGCATGCGGGCGCTCAG
* * *
16939945 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
16940010 TGCTACCGCAACCCTCGGTCCCGTCTGAT
130 TGCTACCGCAACCCTCGGTCCCGTCTGAT
* * * * * *
16940039 CTTAGAC-TGGGAATGAGCTTCGTATGCCTAAGTCAACCCATGAAACGAGCATTCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * * * * *
16940103 CCCACCGGAAAGGCATAATACGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATC
* * * **
16940168 CTGTTACCACAACCCTCGGT-CCGACTAGGG
129 CTGCTACCGCAACCCTCGGTCCCGTCT-GAT
* * *
16940198 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GGAGTGCGGGAGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCA-TGCGGGCGCTCAG
* *
16940262 CCGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCGAT-CCCCCTGCATGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * *
16940326 TACTATCGCAACCCTCAGTCCGGTCCGAT
130 TGCTACCGCAACCCTCGGTCCCGTCTGAT
*
16940355 CTTAGAC-TGGGAATGAGCTCC
1 CTTAGACAT-GGAATGAACTCC
16940376 ACATGCTTAG
Statistics
Matches: 279, Mismatches: 50, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
156 1 0.00
157 49 0.18
158 107 0.38
159 121 0.43
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCCGTCTGAT
Found at i:16940749 original size:683 final size:671
Alignment explanation
Indices: 16939880--16941366 Score: 1787
Period size: 683 Copynumber: 2.2 Consensus size: 671
16939870 ATCTCCGTAT
* *
16939880 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGAGCACTCA
*
16939944 GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATC
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
** * *
16940009 CTGCTACCGCAACCCTCGGTCCCGTCTGATCTTAGACTGGGAATGAGCTTCGTATGCCTAAGTCA
129 CTAATACCGCAACCCTCAGTCCCGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
* * * *
16940074 ACCCATGAAACGAGCATTCAGGCGCTGAGCCCACCGGAAAGGCATAATACGCAAGCCGGGGATC-
194 ACCCACGAAACGAGCATGCAGGCGCTGAGCCCACCAGAAAGGCATAATACACAAGCCGGGGATCA
* ** * * ** *
16940138 GACCCGGTCCCCCTCTGTGTGCTGTCGAT-CCTGTTACCACAACCCTCGGTCCGACTAGGGCTTA
259 G-CCCGATCCCCCTCTACGTACTGTAGATACC-ACTACCACAACCCTCAGTCCGACTAGGGCTTA
* *
16940202 -GACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT-GAAACGGGAGTGCGGG-AGCTCAGCC
322 GGA-ATGGAATGAACTCCCGATGCCTAAGCCAACCC-TCAAAACGGGAGTGCGGGCA-CTCAGCC
*
16940264 GACCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCGATCCCCC-TGCATGCTGTCGATCCTA
384 GACCGGAGAGGCAGAATGCGAAAGCCGAGGATCGACCCGATCCCCCATGCATGCTGTCGATCCTA
* * * *
16940328 CTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAGCTCCACATGCTTAGACTAGGG
449 CTACCGCAACCCTCAGTCCGATCCGATCCTAGACTGGGAATGAACTCCACATGCTTAGACTAGGG
* *
16940393 ATGAACTCCGTATGCCTAACTCAATCCACGAAATGAGCGTATGGGCTCTCAGCCGGTGGAAGAGG
514 ATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCG--T--G--C-CAG-C-GT---ACA-G
* * * * * * *
16940458 CCGATCGGAGAGACATAATGCATAAGCCGGGGATCAACTCGGTCCCCCTCTGCGTGTTATCGATC
566 CCGATCGGAGAGACATAATGCACAAGCCGGGGATCAACTCGGTCACCATCCGCGTGATACCAATC
*
16940523 CCGCTG-CGAGTCCTGCTGCCACAACCCTCGGTCTGACT-AG
631 CCGCTGTCG-GTCCTACTGCCACAACCCTCGGTCTGACTGAG
* * * *
16940563 GCTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACGAAACGAGTGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
* * *
16940628 CC-AGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGTTGTCGATC
66 CCGA-TCGGAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
** *
16940692 CTAATGGCGCAACCCTCAGT-CTGATC-GAATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAG
129 CTAATACCGCAACCCTCAGTCCCG-TCTG-ATCTTAGACTGGGAATGAACTTC-GTATGCCTAAG
* * * * * * *
16940754 TCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCAGAGAGGCATAATGCATAAGCCGGGGA
191 TCAACCCACGAAACGAGCATGCAGGCGCTGAGCCCACCAGAAAGGCATAATACACAAGCCGGGGA
* * * ** *
16940819 TCAGCCCGATCCCTCTCTACGTACTGTAGGTACCACTACCACAACCTTCAGTTTGACTGGGGCTT
256 TCAGCCCGATCCCCCTCTACGTACTGTAGATACCACTACCACAACCCTCAGTCCGACTAGGGCTT
* *
16940884 AGGAATGGAATGAACTCCCGATGCCTAAGCCAACCCTCAAAACGGGCGTGCGGGCACTCAGCCGG
321 AGGAATGGAATGAACTCCCGATGCCTAAGCCAACCCTCAAAACGGGAGTGCGGGCACTCAGCCGA
* * * * *
16940949 TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCATGCATGCTGTCGATCCTGCT
386 CCGGAGAGGCAGAATGCGAAAGCCGAGGATCGACCCGATCCCCCATGCATGCTGTCGATCCTACT
* * * * * *
16941014 ACCGCAACCCTCGGTTCGATCTGATCCTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGAT
451 ACCGCAACCCTCAGTCCGATCCGATCCTAGACTGGGAATGAACTCCACATGCTTAGACTAGGGAT
* * * * **
16941079 GAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGTTCAGTTGATCGGAGAGACA
516 GAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTGCCAGCGTACAGCCGATCGGAGAGACA
* *
16941144 TAATGCACAAGCCGGGGATCAGCTCGGTCACCATCCGCGTGATGCCAATCCCGCTGTCGGTCCTA
581 TAATGCACAAGCCGGGGATCAACTCGGTCACCATCCGCGTGATACCAATCCCGCTGTCGGTCCTA
** *
16941209 CTGCCACAACCCTCGGTCTGGTTGGG
646 CTGCCACAACCCTCGGTCTGACTGAG
* * *
16941235 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACGAACGTGC-AGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA-GCACTCA
* * * * * * *
16941299 GTCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGATCTGATCCCCCCTACGTGCTGTCGATC
65 GCCGATCGGAGAGGCAGAATGCGCAAGC-CGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
16941364 CTA
129 CTA
16941367 CTGCTGGTCC
Statistics
Matches: 687, Mismatches: 100, Indels: 45
0.83 0.12 0.05
Matches are distributed among these distances:
671 88 0.13
672 114 0.17
673 1 0.00
675 2 0.00
676 1 0.00
677 2 0.00
678 1 0.00
680 1 0.00
682 8 0.01
683 353 0.51
684 116 0.17
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (671 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
AATACCGCAACCCTCAGTCCCGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
CCACGAAACGAGCATGCAGGCGCTGAGCCCACCAGAAAGGCATAATACACAAGCCGGGGATCAGC
CCGATCCCCCTCTACGTACTGTAGATACCACTACCACAACCCTCAGTCCGACTAGGGCTTAGGAA
TGGAATGAACTCCCGATGCCTAAGCCAACCCTCAAAACGGGAGTGCGGGCACTCAGCCGACCGGA
GAGGCAGAATGCGAAAGCCGAGGATCGACCCGATCCCCCATGCATGCTGTCGATCCTACTACCGC
AACCCTCAGTCCGATCCGATCCTAGACTGGGAATGAACTCCACATGCTTAGACTAGGGATGAACT
CCGTATGCCTAACTCAACCCACGAAATGAGCGTGCCAGCGTACAGCCGATCGGAGAGACATAATG
CACAAGCCGGGGATCAACTCGGTCACCATCCGCGTGATACCAATCCCGCTGTCGGTCCTACTGCC
ACAACCCTCGGTCTGACTGAG
Found at i:16941080 original size:26 final size:26
Alignment explanation
Indices: 16941041--16941091 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16941031 GATCTGATCC
*
16941041 TAGATTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
16941067 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
16941092 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:16941435 original size:26 final size:26
Alignment explanation
Indices: 16941406--16941456 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16941396 CCGATCCGAT
16941406 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16941432 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
16941457 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16941615 original size:195 final size:196
Alignment explanation
Indices: 16941235--16942125 Score: 949
Period size: 196 Copynumber: 4.6 Consensus size: 196
16941225 TCTGGTTGGG
* * * * *
16941235 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACGAA-CGTGCAGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AAGCGTACGGGCACTCA
* * * * * * *
16941299 GTCGACCGGAGAGGCAGAATGCACAAG-CTGGGGATCGATCTGATCCCCCCTACGTGCTGTCGAT
65 GCCGACCGAAGAGGCAGAATGCGCAAGTC-GGGGATCGACCCGATCCCCCCTGCATGCTGTCGAT
* **
16941363 CCTACTGCTGGTCCTGCTACCGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
129 CCTGCTGCTGGTCCTGCTACCACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
16941428 TAT
194 TAT
* * * * **
16941431 GCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCATGAAACAAGAGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAG
* * * * * *
16941496 CCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATTGGCCCGAT-CCCCCTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
* * * ** *
16941560 TGCTACTGGTCCTGCTACCGCAACCCTTGGTCTGATTTGATCTTAGACTGGGAATGAACTCTGTA
131 TGCTGCTGGTCCTGCTACCACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
16941625 T
196 T
* * *
16941626 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCTACCCATGAAACAAGCGTACGGGCATTC-G
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAG
* * ** * * * *
16941690 CCCGATCGAAGAGGTAGAACACGTAAGTCGGGGATCGACTCGGTCCCCCCTGCATGCTGCCGATC
66 -CCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
* * * * * *
16941755 CTGCTGCTGGTCCTGCTATCACAACCCTTGATCCGGTCCAATCTTAGATTGGGAAAGAACTCCGT
130 CTGCTGCTGGTCCTGCTACCACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
16941820 AT
195 AT
* * *
16941822 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAG
* * * *
16941887 CC-AGCCGAAGAGGCAGAATGTGTAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
66 CCGA-CCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
* * ** * * * * *
16941951 CTGTTGCTGGTCCTACTGTCACTACCATCGGT-C--T--GATCTTAGATTGGGAATGAACTCTGT
130 CTGCTGCTGGTCCTGCTACCACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
16942011 AT
195 AT
* * * * *
16942013 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAG
* * * * * * * *
16942078 CCAATCGGAGAGGCATAATGTGCAAG-CAGCGGATCGGCCCGGTCCCCC
66 CCGACCGAAGAGGCAGAATGCGCAAGTC-GGGGATCGACCCGATCCCCC
16942126 TCTGTGTGCT
Statistics
Matches: 593, Mismatches: 94, Indels: 21
0.84 0.13 0.03
Matches are distributed among these distances:
190 1 0.00
191 123 0.21
192 1 0.00
193 1 0.00
194 1 0.00
195 170 0.29
196 294 0.50
197 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAG
CCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
TGCTGCTGGTCCTGCTACCACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
T
Found at i:16941630 original size:26 final size:26
Alignment explanation
Indices: 16941601--16941653 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16941591 CTGATTTGAT
*
16941601 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16941627 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16941653 C
1 C
16941654 CCAAGCCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16942332 original size:26 final size:26
Alignment explanation
Indices: 16942303--16942355 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16942293 CCGGTCTGAT
*
16942303 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16942329 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16942355 C
1 C
16942356 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16943064 original size:26 final size:26
Alignment explanation
Indices: 16943025--16943077 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943015 GGCTCAAACT
16943025 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16943051 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
16943077 C
1 C
16943078 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16943349 original size:159 final size:159
Alignment explanation
Indices: 16943060--16943553 Score: 421
Period size: 159 Copynumber: 3.1 Consensus size: 159
16943050 GCTTAGACAT
** *
16943060 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGAAA
1 GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGATCGAAA
* * * * *
16943125 AGGTAGAATGTGCAAGCCGGGGATCGGCCCGATTCCCCCCTGTGTGTTGTCAATCCTGCTGCCAC
66 AGGCAGAATGCGCAAGCCGAGGATCGGCCCGAGTCCCCCCTGTGTGCTGTCAATCCTGCTGCCAC
16943190 AACCCTTGATCCGATCCAATCTTGGACTG
131 AACCCTTGATCCGATCCAATCTTGGACTG
* * *
16943219 GGAATGAACTCCGTATGCAAAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG-C-TTACTGA
1 GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGAT-C-GA
* * **
16943282 AGAGGCATAATGCGCAAGCCGAGGATCGGCCCG-GTCCCCCTCTGTGTGCTGTCGGTCCCT-CTG
64 AAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGAGTCCCCC-CTGTGTGCTGTCAAT-CCTGCTG
* * * * * ** **
16943345 CCACAACCCTCGGTCTG-GCTAGGGCTTATACAT-
127 CCACAACCCTTGATCCGATCCA-ATCTTGGAC-TG
* ** * * * * * *
16943378 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAG-CCAGCCGAA
1 GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGA-TCGAA
* * * * * * *
16943442 GAGGCAGAATGCGCAAGCCGAGGATCGGCTCGA-TCCCCCCTGCGTGC-GACCGATCCTACTACC
65 AAGGCAGAATGCGCAAGCCGAGGATCGGCCCGAGTCCCCCCTGTGTGCTG-TCAATCCTGCTGCC
* * * * * ** *
16943505 GCAACCCTCGGTCTGGTCTGATCTTAGACTG
129 ACAACCCTTGATCCGATCCAATCTTGGACTG
16943536 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16943554 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 48, Indels: 27
0.79 0.14 0.08
Matches are distributed among these distances:
157 6 0.02
158 61 0.22
159 202 0.74
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGATCGAAA
AGGCAGAATGCGCAAGCCGAGGATCGGCCCGAGTCCCCCCTGTGTGCTGTCAATCCTGCTGCCAC
AACCCTTGATCCGATCCAATCTTGGACTG
Found at i:16943568 original size:26 final size:26
Alignment explanation
Indices: 16943527--16943579 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943517 CTGGTCTGAT
16943527 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16943553 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
16943579 C
1 C
16943580 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16945302 original size:26 final size:26
Alignment explanation
Indices: 16945264--16945316 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16945254 GGCTCAAAAT
16945264 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16945290 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16945316 C
1 C
16945317 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16945584 original size:159 final size:158
Alignment explanation
Indices: 16945290--16945772 Score: 540
Period size: 159 Copynumber: 3.0 Consensus size: 158
16945280 ACTCCGTATG
**
16945290 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGTGCGGGCGCTCAGC
* *** * * * * *
16945355 CAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGAATGGTCCCCCCCTGCGTGCTATCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGTTTC
*
16945420 TGCTGCCATAACCCTCGGTCCGGTCTGAT
131 -GCTGCCACAACCCTCGGTCCGGTCTGAT
* * * * * * *
16945449 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGTGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGTGCGGGCGCTCAG
* * * *
16945513 CCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTACCGGTT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACC-GTT
* * **
16945578 TCGCTGCCACAACCCTCAGTCCAG-CTGGGG
129 TCGCTGCCACAACCCTCGGTCCGGTCT-GAT
* * * *
16945608 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCGACAAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
16945673 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCGT-TGCGTGCTGCCAATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGTTTC
* * *
16945737 TTCTGTCACAACCCTCGGTCTGGTCTGAT
131 -GCTGCCACAACCCTCGGTCCGGTCTGAT
16945766 CTTAGAC
1 CTTAGAC
16945773 TGGGAATTAA
Statistics
Matches: 264, Mismatches: 54, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 38 0.14
159 220 0.83
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGTTTC
GCTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:16946087 original size:196 final size:195
Alignment explanation
Indices: 16945725--16946122 Score: 514
Period size: 196 Copynumber: 2.0 Consensus size: 195
16945715 CCCCGTTGCG
* * ** *
16945725 TGCTGCCAATCCTTCTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATTAACCTCCTA
1 TGCTGCCAATCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACCTCCTA
* * * * **
16945790 TGCTTGGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTTCTCA
66 TGCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCA
* *
16945855 GCCGACCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCCTGC-TGCTGCCAAT
131 ACCGACCGGAGAGGTAGAATGCACAAGCCAGGGATCG-CCCGGT-CCCCCCTGCGTGCTGCCAAT
16945919 CC
194 CC
* * * *
16945921 TGCTGCTAGTCCTGCTGTCTCAACGCTCGGTCCGGTCCAATCTTAGACTGGGAATGAA-CTCCAT
1 TGCTGCCAATCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACCTCC-T
** * *
16945985 ATGCTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACT
65 ATGCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACT
** * *
16946049 CAACCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGCCCGGTCCCCCCTGCGTGCTGTCAAT
129 CAACCGACCGGAGAGGTAGAATGCACAAGCCAGGGATCGCCCGGTCCCCCCTGCGTGCTGCCAAT
16946114 CC
194 CC
16946116 TGCTGCC
1 TGCTGCC
16946123 GCAACCCTCG
Statistics
Matches: 173, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
194 9 0.05
195 28 0.16
196 136 0.79
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.21
Consensus pattern (195 bp):
TGCTGCCAATCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACCTCCTA
TGCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCA
ACCGACCGGAGAGGTAGAATGCACAAGCCAGGGATCGCCCGGTCCCCCCTGCGTGCTGCCAATCC
Found at i:16952176 original size:26 final size:26
Alignment explanation
Indices: 16952140--16952192 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16952130 CCGGTCTGAT
*
16952140 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16952166 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16952192 C
1 C
16952193 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16952899 original size:26 final size:26
Alignment explanation
Indices: 16952861--16952913 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16952851 GGCTCAAAAT
16952861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16952887 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16952913 C
1 C
16952914 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16953259 original size:159 final size:159
Alignment explanation
Indices: 16952886--16953380 Score: 622
Period size: 158 Copynumber: 3.1 Consensus size: 159
16952876 AACTCCGTAT
* *
16952886 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
16952951 CCGACCGGAGAGGCAGATTGCGCAAGCCGAGGATCGACCCAGTCCCCCT-TGCTTGTTGTCAATC
66 CCGGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCATGCTGCCGATC
*
16953015 CTGCTGCCACAACCCTCGGTCTGGTCTGA
131 CTGCTGCCACAACCCTCGGTCCGGTCTGA
* * * * *
16953044 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
16953108 GCCGGCCGAAGAGGCATAATACGCAAGCCGAGGATCAACCCAGTCCCCCTCTGCATGCTACCGGT
65 GCCGGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCATGCTGCCGAT
* * *
16953173 CCCGCTGCCACAACACTCGGTCCGGT-TAGG
130 CCTGCTGCCACAACCCTCGGTCCGGTCT-GA
* * * *
16953203 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16953268 TCGGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCC-CTTCATGCTGCCGATC
66 CCGGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCATGCTGCCGATC
*
16953332 CTGCTGCCGCAACCCTCGGTCCGGTCTGA
131 CTGCTGCCACAACCCTCGGTCCGGTCTGA
*
16953361 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
16953381 TCGTTTGCTT
Statistics
Matches: 284, Mismatches: 47, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
157 2 0.01
158 153 0.54
159 128 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCATGCTGCCGATC
CTGCTGCCACAACCCTCGGTCCGGTCTGA
Found at i:16954245 original size:158 final size:158
Alignment explanation
Indices: 16953745--16954237 Score: 451
Period size: 158 Copynumber: 3.1 Consensus size: 158
16953735 ACTCTGTATG
* *
16953745 CTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAATGAGCGTGCGGGCATTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAAC
* * * *
16953810 C-AGCCGGAGAGGCAAAATGCGTAAG-TCAGGGATCGG-TCTAGTCCCCCCTGCGTGCTATCGAT
66 CGA-CCGGAGAGGCAAAATGCGCAAGCTGA-GGATCGGCTCGA-TCCCCCCTGCGTGCTACCGAT
* * * * * *
16953872 CCTGCTGCCGCAACCTTCGGTCCGATCCGAT
128 CCTGCTGCCGCAACCCTCGATCTGGTTCAAT
* * * * * ** * *
16953903 CTTAGAC-TAGGAATTAACTCTGTATGCCTAAGTCAACCGATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAA
* * * * ** * * * **
16953967 CCGACCGGAGAGGCATAATACGCAAGCCGGGGATCAACCCGGTCCCCTCTGCGTGCTACCGGCCC
65 CCGACCGGAGAGGCAAAATGCGCAAGCTGAGGATCGGCTCGATCCCCCCTGCGTGCTACCGATCC
* * * **
16954032 CGCTGCCACAACCCTC-ATTCTGGCT-AGGG
130 TGCTGCCGCAACCCTCGA-TCTGGTTCA-AT
* * * * *
16954061 CTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGGGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAAC
* * *
16954126 CGACCGGAGAGGCAGAATGCACAAGCTGAGGATCGGCTCGATCCCCCCTGTGTGCTACCGATCCT
66 CGACCGGAGAGGCAAAATGCGCAAGCTGAGGATCGGCTCGATCCCCCCTGCGTGCTACCGATCCT
* *
16954191 GGTGCTGCAACCCTCGATCTGGTTCAAT
131 GCTGCCGCAACCCTCGATCTGGTTCAAT
16954219 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
16954238 TCATATGCTT
Statistics
Matches: 253, Mismatches: 72, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
157 2 0.01
158 246 0.97
159 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAAC
CGACCGGAGAGGCAAAATGCGCAAGCTGAGGATCGGCTCGATCCCCCCTGCGTGCTACCGATCCT
GCTGCCGCAACCCTCGATCTGGTTCAAT
Found at i:16954977 original size:26 final size:26
Alignment explanation
Indices: 16954939--16954991 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16954929 GGCTCAAAAT
*
16954939 CTTAGACTGGGAATCAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
16954965 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
16954991 C
1 C
16954992 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:16955858 original size:26 final size:26
Alignment explanation
Indices: 16955822--16955874 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16955812 CCGGTCTGAT
*
16955822 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16955848 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16955874 C
1 C
16955875 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16956919 original size:157 final size:156
Alignment explanation
Indices: 16956561--16956939 Score: 367
Period size: 155 Copynumber: 2.4 Consensus size: 156
16956551 AACTCTGTAT
* * *
16956561 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACTAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * ** *
16956626 TTGCCCGGAGAGGCAGAATGCTGAAGCCGGGGATCGGCCCGGTCCCCCTGCATGCTGTTGATCTT
66 TCGCCCGAAGAGGCAGAATGCTGAAGCCGAGGATCGGCCCGGTCCCCCTGCATGCTGTACATCCT
* *
16956691 GCTACCATAACCTCGGTCTGATCCGA
131 GCTACCACAACCTCAGTCTGATCCGA
* * * * * **
16956717 TCTTACAC-TGGAATGAACTCCGTATGCATAAGTCAACCCAGGAAACGAGCGTGCGAGCGCTGTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * **
16956781 TCG-GCGAAGAGGCATAATGC-GTAAGTCGAGGATCGGGTCGGTCCCCCT-C-TGCGTGCTACAG
66 TCGCCCGAAGAGGCAGAATGCTG-AAGCCGAGGATCGGCCCGGTCCCCCTGCATGC-TG-TACA-
* * * *
16956842 TCCTGTTGCCACAACCCTCAGTCTGA-CTGGG
127 TCCTGCTACCACAA-CCTCAGTCTGATC-CGA
* * * *
16956873 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGC-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGA-GCGCTCA
16956937 GTC
65 GTC
16956940 AGTTGGAGAG
Statistics
Matches: 178, Mismatches: 37, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
152 3 0.02
153 4 0.02
154 38 0.21
155 62 0.35
156 23 0.13
157 48 0.27
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGAGCGCTCAG
TCGCCCGAAGAGGCAGAATGCTGAAGCCGAGGATCGGCCCGGTCCCCCTGCATGCTGTACATCCT
GCTACCACAACCTCAGTCTGATCCGA
Found at i:16958672 original size:27 final size:26
Alignment explanation
Indices: 16958633--16958686 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 26
16958623 GGCTCAAAAT
16958633 CTTAGACTGGGAAATGAACTCCGTATG
1 CTTAGACTGGG-AATGAACTCCGTATG
16958660 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16958686 C
1 C
16958687 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 16 0.62
27 9 0.35
28 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16958897 original size:159 final size:157
Alignment explanation
Indices: 16958660--16959154 Score: 518
Period size: 159 Copynumber: 3.1 Consensus size: 157
16958650 ACTCCGTATG
* *
16958660 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCTGAGC
* ** *
16958725 CGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCCCTGCTTGTTGTCAATCCT
65 CGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCCCTGCTTGCTACCGATCCT
*
16958790 GCTGCCACAACCCTCGGTCTGGTCTGAT
130 GCTGCCACAACCCTCGGTCCGGTCTGAT
* * * * *
16958818 CTTTAGAC-TGGGAATGAACTCCATATGCATAAGTCGACCCACGAAACGAGCGTGCGGGCGCTGA
1 C-TTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCTGA
* * * * * *
16958882 GCCGACCGAAGAGGCATAATACGTAAGCCGAGGATCAACCCAGTCCCCCTCTG-TGTGCTACCGG
63 GCCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCC-CTGCT-TGCTACCGA
* **
16958946 T-CTCGCTGCCACAACACTCGGTCCGGT-TAGGG
126 TCCT-GCTGCCACAACCCTCGGTCCGGTCT-GAT
* * *
16958978 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACACATGAAATGGGCATGCGGGCGCTCG-G
1 CTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCT-GAG
* * * * * * * * *
16959042 TC-AGCCGGAGAGACAGAATACGCAAGCCAGGGATTGGCTCGGTCCCCCCTACATGCTACCGATC
64 CCGA-CCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCCCTGCTTGCTACCGATC
**
16959106 CTGCTGCCGTAACCCTCGGTCCGGTCTGAT
128 CTGCTGCCACAACCCTCGGTCCGGTCTGAT
16959136 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
16959155 TCATTTGCTT
Statistics
Matches: 273, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
157 1 0.00
158 52 0.19
159 186 0.68
160 34 0.12
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCTATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCTGAGCC
GACCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCCCTGCTTGCTACCGATCCTG
CTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:16959821 original size:158 final size:158
Alignment explanation
Indices: 16959529--16959923 Score: 389
Period size: 158 Copynumber: 2.5 Consensus size: 158
16959519 ACTCTGTATG
*
16959529 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
** * * * *** * * * *
16959594 CGGTCGGAGAGGCAAAATGCGTAAGTCAGGGATCGGTCTAGTCCCCCCTGCGTGCTATCGATCCT
66 CGACCGGAGAGGCAAAATACGCAAGCCAGGGATCAACCCAGTCCCCCCTGCGTGCTACCGACCCC
*
16959659 GCTGCCGCAACCTTCGGTCCGATCCGAT
131 GCTGCCACAACCTTCGGTCCGATCCGAT
* * * * * * *
16959687 CTTAGAC-TAGGAATTAACTCTGTATGCCTAAGTCAACCGATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
* * * * *
16959751 CCGACCGGAGAGGCATAATACGCAAGCCGGGGATCAACCCGGTCCCCTCTGCGTGCTACCGGCCC
65 CCGACCGGAGAGGCAAAATACGCAAGCCAGGGATCAACCCAGTCCCCCCTGCGTGCTACCGACCC
* ** * * * **
16959816 CGCTGCCACAACCCTCATTCTG-GCTAGGG
130 CGCTGCCACAACCTTCGGTCCGATC-CGAT
* * * * * * *
16959845 CTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGGGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
16959910 CGACCGGAGAGGCA
66 CGACCGGAGAGGCA
16959924 GAATGCACAA
Statistics
Matches: 186, Mismatches: 48, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
157 2 0.01
158 183 0.98
159 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
CGACCGGAGAGGCAAAATACGCAAGCCAGGGATCAACCCAGTCCCCCCTGCGTGCTACCGACCCC
GCTGCCACAACCTTCGGTCCGATCCGAT
Found at i:16960775 original size:26 final size:26
Alignment explanation
Indices: 16960724--16960776 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16960714 GGCTCAAAAT
*
16960724 CTTAGACTGGGAATCAACTTCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
16960750 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATCAACTCCATATG
16960776 C
1 C
16960777 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:16961644 original size:26 final size:26
Alignment explanation
Indices: 16961608--16961660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16961598 CCGATCTGAT
*
16961608 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16961634 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16961660 C
1 C
16961661 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16962717 original size:159 final size:158
Alignment explanation
Indices: 16962354--16962772 Score: 391
Period size: 159 Copynumber: 2.6 Consensus size: 158
16962344 AACTCCGTAT
* * *
16962354 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACTAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
16962419 CCGACCGGAGAGGCAGAATGCTGAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCT
66 TCGACCGAAGAGGCAGAATGCTGAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCTACCGATCC
* *
16962484 TGCTGCCATAACCCTCGGTATGATCCGA
131 TGCTGCCACAACCCTCAGTATGATCCGA
* * * * * *
16962512 TCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCAGGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * *
16962576 GTCGGCCGAAGAGGCATAATGC-GTAAGTCGAGGATCGGGTCGGTCCCCCTCTGCGTGCTACC-A
65 GTCGACCGAAGAGGCAGAATGCTG-AAGCCGAGGATCAGCCCGATCCCCC-CTGCATGCTACCGA
* * * *
16962639 GTCCTGTTGCCACAACCCTCAGTCTGA-CTGGG
128 -TCCTGCTGCCACAACCCTCAGTATGATC-CGA
* * * * *
16962671 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * *
16962736 TC-AGTTGGAGAGGCAGAATGC-GCAAGCCGGGGATCAG
66 TCGA-CCGAAGAGGCAGAATGCTG-AAGCCGAGGATCAG
16962773 TCTGATCGAC
Statistics
Matches: 206, Mismatches: 48, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 92 0.45
159 111 0.54
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCGAAGAGGCAGAATGCTGAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCTACCGATCC
TGCTGCCACAACCCTCAGTATGATCCGA
Found at i:16963251 original size:26 final size:26
Alignment explanation
Indices: 16963200--16963252 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16963190 CCGATCTGAT
* **
16963200 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCATATG
16963226 CTTAGACAT-GGAATGAAATCCATATG
1 CTTAGAC-TGGGAATGAAATCCATATG
16963252 C
1 C
16963253 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:16963597 original size:159 final size:159
Alignment explanation
Indices: 16963225--16963726 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 159
16963215 AACTCTGTAT
* * * ** * * *
16963225 GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAACCCACGAAATGAGTATACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACATGCGGGTGCTCAG
* * * * **
16963290 CCGGTCGGAA-AGGCAGAATACGTAAGCCGGGGACCGGTCGGGT-CCCCTCTGCGTGCTGTCGAT
66 CCGGTC-GAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGAT
* ** *
16963353 CCTACTGTCGTAACCCTCGGTCTGGTCTGA
130 CATACTACCATAACCCTCGGTCTGGTCTGA
* * *
16963383 TCTTA-AC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAAC-AAGCATGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAA-CATGCGGGTGCTC
* * * *
16963445 AGCCAGTCGAAGAGGCATAATACGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGG
64 AGCCGGTCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGA
* *
16963510 TCATGCTACCATAACCCTCGGTCTGGT-TGGG
129 TCATACTACCATAACCCTCGGTCTGGTCT-GA
* * *
16963541 GGTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACATGCGGGTGCTCAG
* * * * * * * * * * * *
16963606 CCGGTCGGAGAGACAGAATGCACAAGCTGGGGATCGACCCGATCCCCC-ATACATGCTGCCAATC
66 CCGGTCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATC
* * * * ** *
16963670 TTGCTACCGTAACCCTCAGTCCAGTTTGA
131 ATACTACCATAACCCTCGGTCTGGTCTGA
*
16963699 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
16963727 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
156 5 0.02
157 79 0.29
158 101 0.36
159 89 0.32
160 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACATGCGGGTGCTCAG
CCGGTCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATC
ATACTACCATAACCCTCGGTCTGGTCTGA
Found at i:16964462 original size:26 final size:26
Alignment explanation
Indices: 16964424--16964476 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16964414 GGCTCAAAAT
*
16964424 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
16964450 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
16964476 C
1 C
16964477 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:16964751 original size:159 final size:154
Alignment explanation
Indices: 16964450--16964944 Score: 494
Period size: 159 Copynumber: 3.1 Consensus size: 154
16964440 ACTCCGTATG
* * * *
16964450 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACGCATGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
16964515 CGGCCAGAA-AGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCACCCCTTACGTGCTATCAATC
66 CGGTC-GAAGAGGCAGAATGCGCAAGCCG-GGATC-GCCCG-TC-CCCCTTGCGTGCTACCAGTC
* *
16964579 CTGCTGCTGCAACCCTCAGTCCGATCTGAT
126 CTGCTGCCGCAACCCTCGGTCCGA-CTGAT
* * * *
16964609 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
16964673 CCGGTCGAAGAGGCATAATGAGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCAGTC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCC-GGGATC-GCCC-GTCCCCCT-TGCGTGCTACCAGTC
* * * * * **
16964738 CCGCTACCACAACCCTCGGTCTGGCTAGGG
126 CTGCTGCCGCAACCCTCGGTCCGACT-GAT
* * * *
16964768 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
16964833 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCTGTCCCCCTTGCGTGCTACC-GATCC
66 CGGTCGAAGAGGCAGAATGCGCAAGC-CGGGATCG-CCC-GTCCCCCTTGCGTGCTACCAG-TCC
* *
16964897 TACTGCCGCAACCCTCGGTCCGGACCGAT
127 TGCTGCCGCAACCCTCGGTCC-GACTGAT
16964926 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
16964945 TCATATGCTT
Statistics
Matches: 274, Mismatches: 50, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 59 0.22
159 210 0.77
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGATCGCCCGTCCCCCTTGCGTGCTACCAGTCCTGCT
GCCGCAACCCTCGGTCCGACTGAT
Found at i:16964977 original size:26 final size:26
Alignment explanation
Indices: 16964926--16964978 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16964916 CCGGACCGAT
*
16964926 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16964952 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16964978 C
1 C
16964979 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16965234 original size:170 final size:171
Alignment explanation
Indices: 16964952--16965259 Score: 420
Period size: 170 Copynumber: 1.8 Consensus size: 171
16964942 ACTTCATATG
* * * * * * *
16964952 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAGC
* * *
16965017 CGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGAT-CCCCCCTACGTGCTACCGATCC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCCTACGTGCTACCGATCC
16965081 TGCTGCTGGTCCTACTACTGCAACCCTCGGTCCGGTCCGAT
131 TGCTGCTGGTCCTACTACTGCAACCCTCGGTCCGGTCCGAT
* * *
16965122 CTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGTGCGTGCGAGTGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAGC
** * * * * **
16965187 CGGTCAGAGAGGCAGAATGTGCAAGCCGTGGACCGACTCGATCCCCCCCTGCGTGCTGTCGATCC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCCTACGTGCTACCGATCC
16965252 TGCTGCTG
131 TGCTGCTG
16965260 TAACCTTCAA
Statistics
Matches: 116, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
170 89 0.77
171 27 0.23
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (171 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCCTACGTGCTACCGATCC
TGCTGCTGGTCCTACTACTGCAACCCTCGGTCCGGTCCGAT
Found at i:16965393 original size:513 final size:503
Alignment explanation
Indices: 16964422--16965430 Score: 1081
Period size: 513 Copynumber: 2.0 Consensus size: 503
16964412 GTGGCTCAAA
*
16964422 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAAC
* * * *
16964487 GCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAAAGGCAGAATGCGCAAGTCGAGGATCGGC
66 GCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGAC
* * *
16964552 CCGATCACCCCTTACGTGCTATCAATCCTGCTGCTGCAACCCTCAGTCCGATCTGATCTTAGACT
131 CCGATCACCCCCTACGTGCTACCAATCCTGCTGCTGCAACCCTCAGTCCGATCCGATCTTAGACT
* * * *
16964617 AGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAACCGGTCGAA
196 AGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAACCGGTCGAA
* * *
16964682 GAGGCATAATGAGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCAGTCCCGCTACCA
261 GAGGCAGAATGAGCAAGCCAGGGACCAGCCCAGTCCCCCCCTGCGTGCTGCCAGTCCCGCTACCA
** * *
16964747 CAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
326 CAACCCTCAATCCGGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * *
16964812 ACGGGCGTACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCTGTCC
391 ACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCTGTCC
* *
16964877 CCC-TTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGGACCG
456 CCCTTTGCGTGCTACCGATCCCACTGCCACAACCCTCGGTCCGGACCG
* * * *
16964924 ATCTTAGACTGGGAATGAACTTCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACACCGTATGCCTAAGCCAA
* * * * * * *
16964988 TC-CACGAAATGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCG
65 -CGCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCG
* * *
16965052 ACCCGATC-CCCCCTACGTGCTACCGATCCTGCTGCTGGTCCTACTACTGCAACCCTCGGTCCGG
129 ACCCGATCACCCCCTACGTGCTACCAAT-C--CTGCT-G--------CTGCAACCCTCAGTCCGA
* * * * *
16965116 TCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGTGCGTGCGAGTG
182 TCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGAGCG
* * *
16965181 CTCAGCCGGTC-AGAGAGGCAGAATGTGCAAGCC-GTGGACC-GACTC-GATCCCCCCCTGCGTG
247 CTCAACCGGTCGA-AGAGGCAGAATGAGCAAGCCAG-GGACCAG-CCCAG-TCCCCCCCTGCGTG
* * * *** * * * * *
16965242 CTGTC-GATCCTGCTGCTGTAACCTTCAATCC-GATCAGATCTTAGAC-TGGGAATGAACTTCGT
308 CTGCCAG-TCCCGCTACCACAACCCTCAATCCGGCT-AGAGCTTAGACAT-GGAATGAACTCCCT
* * * * * * *
16965304 ATGCCTAAGTCAATCCACGAAATGAGCGTACGGGTGCTGAGCC-AGTTGGAGAGGCATAATGCGC
370 ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGA-TCGGAGAGGCAGAATGCGC
* * * * * * *
16965368 AAGTTGAGGATCGGCTC-GATCCCCCTTTGCTTGCTGCCGGTCCCACTGGCACAACCCTCGGTC
434 AAGCTGAGGATCGACCCTG-TCCCCCTTTGCGTGCTACCGATCCCACTGCCACAACCCTCGGTC
16965431 TGGCTGGGGC
Statistics
Matches: 412, Mismatches: 71, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
501 17 0.04
502 117 0.28
503 1 0.00
504 5 0.01
505 1 0.00
512 10 0.02
513 230 0.56
514 31 0.08
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (503 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAAC
GCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGAC
CCGATCACCCCCTACGTGCTACCAATCCTGCTGCTGCAACCCTCAGTCCGATCCGATCTTAGACT
AGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAACCGGTCGAA
GAGGCAGAATGAGCAAGCCAGGGACCAGCCCAGTCCCCCCCTGCGTGCTGCCAGTCCCGCTACCA
CAACCCTCAATCCGGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCTGTCC
CCCTTTGCGTGCTACCGATCCCACTGCCACAACCCTCGGTCCGGACCG
Found at i:16965622 original size:26 final size:26
Alignment explanation
Indices: 16965586--16965638 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16965576 TCGGTCCTAT
16965586 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
16965612 CTTAGGCTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16965638 C
1 C
16965639 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16966327 original size:158 final size:158
Alignment explanation
Indices: 16965819--16966382 Score: 593
Period size: 158 Copynumber: 3.6 Consensus size: 158
16965809 CTTATACATA
* * * *
16965819 GAATGAACTCCGTGTGCCTAAGCCAACCCA-TAGAACGAGTGTGCGGGCACTCAGCCGGTCGGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGAGCGTGCGGGCACTCAGCCGGCCGGAG
* * * * * *
16965883 AGGCAGAAT-CACAAGCCGGGGACCAGCTCGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCA
65 AGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGTCGCA
*
16965947 ACCCTCGGTCCGATCTGATCTTAGACTGG
130 ACCCTCGGTCCGATTTGATCTTAGACTGG
* * * * * *
16965976 GAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTGAGCTGGCGGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGA
* * *
16966041 GGCATAATGCACAAG-TGGAGGATCGGCCC-AGTCCCCCTCTGCGTGCTG-CTGAT-CTCGCTGC
66 GGCAGAATGCACAAGCCGG-GGATCGGCCCGA-TCCCCCT-TGCGTGCTGTC-GATCCT-GCTGT
* * * * **
16966102 CACAACCCTTGGTCCGACTGGGGCTTAGACAT-G
126 CGCAACCCTCGGTCCGATTTGATCTTAGAC-TGG
* * * * *
16966135 GAATGAACTCCCTATGCCTAAGCCAACCCCCGAAACGGGCGTGGGGGCACTCAACCGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGA
* * * * *
16966200 GGTAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTTGTGTGCTGTCAATCCTGCTGTCGCAA
66 GGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGTCGCAA
** *
16966265 CCCTCAATCCGGTTTGATCTTAGACTGG
131 CCCTCGGTCCGATTTGATCTTAGACTGG
* * * * *
16966293 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGA
** *
16966358 GGCAGGGTGCGCAAGCCGGGGATCG
66 GGCAGAATGCACAAGCCGGGGATCG
16966383 AATGGGTGGT
Statistics
Matches: 329, Mismatches: 65, Indels: 25
0.79 0.16 0.06
Matches are distributed among these distances:
157 63 0.19
158 135 0.41
159 126 0.38
160 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGA
GGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGTCGCAA
CCCTCGGTCCGATTTGATCTTAGACTGG
Found at i:16967004 original size:26 final size:26
Alignment explanation
Indices: 16966975--16967027 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16966965 GGCTCAAAAT
*
16966975 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16967001 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16967027 C
1 C
16967028 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16967384 original size:159 final size:158
Alignment explanation
Indices: 16967000--16967426 Score: 450
Period size: 159 Copynumber: 2.7 Consensus size: 158
16966990 AGCTCCGTAT
* * *
16967000 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
16967065 CTGACTGGAA-AGGTAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGTATGCTGTTGATC
66 CTGA-TCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGTATGCTGTCGATC
** * *
16967129 CTGCTACCGCAACCCTCGGTTCGGTCCAA
130 CCACTACCACAACCCTCGGTCCGGTCCAA
* * * * * * *
16967158 TCTTAGACATGGAATGAACTCTGC-ATGCATAAGTCAACTCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
16967222 GCTGGTCGAAGAGGCATAATACGCAAGCCAGGGATCGGCCC-AGTCCCCCTCTGTGTGTTGTCCG
65 GCTGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGA-TCCCCC-CTGTATGCTGT-CG
* * ****
16967286 -TCCCACTGCCACAACCCTCTGTCCGGTTGGG
127 ATCCCACTACCACAACCCTCGGTCCGGTCCAA
* *
16967317 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * *
16967381 GCTGATCGGAGAAGCAGAATGCACAATCCGGGGATCGGCCCGATCC
65 GCTGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCC
16967427 GTCCTGCGTG
Statistics
Matches: 214, Mismatches: 47, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 90 0.42
159 117 0.55
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGTATGCTGTCGATCC
CACTACCACAACCCTCGGTCCGGTCCAA
Found at i:16967505 original size:26 final size:26
Alignment explanation
Indices: 16967476--16967528 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16967466 CCGATCCGAT
16967476 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16967502 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16967528 C
1 C
16967529 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16967889 original size:26 final size:26
Alignment explanation
Indices: 16967845--16967897 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16967835 CCAATTTGAT
*
16967845 CTTAGACTGGAAATTAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16967871 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
16967897 C
1 C
16967898 CTAACCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16968035 original size:185 final size:185
Alignment explanation
Indices: 16967685--16968056 Score: 413
Period size: 185 Copynumber: 2.0 Consensus size: 185
16967675 TCCGGCTGGG
* * * ** *
16967685 GCTTAGACATGGAATCAAATCCGTATGCCTAAGCAAACCCATGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATCAAATCCGTATGCCTAACCAAACCCACGAAACGAGCATGCGGGCACTCAA
* * * *
16967750 CCGGTCGGAGAGGCAGAACGCACAAGTCGGGGATCGGCCCGATCCCCCCTTGCGTACTGTCGATC
66 CCAGACGGAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGATCCCCCCTTACGTACTGTCGATC
* * * * * *
16967815 CTGGTGCCGTAACCCTCGATCCAATTTGATCTTAGAC-TGGAAATTAACTCCGTAT
131 CTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTTGG-AATGAACTCCATAT
* * * * *
16967870 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGTGGGCACTCAA
1 GCTTAGACATGGAATCAAATCCGTATGCCTAACCAAACCCACGAAACGAGCATGCGGGCACTCAA
* * ** * * *
16967935 CCAGACGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTTACGTGCTGTCGATC
66 CCAGACGGAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGATCCCCCCTTACGTACTGTCGATC
* * * *** *
16968000 CTGCTACTGCAACTCTCGGTCTGGTCTGGTCTTAGACTTGGAATGAACTCCATAT
131 CTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTTGGAATGAACTCCATAT
16968055 GC
1 GC
16968057 CTAAGTCAAC
Statistics
Matches: 151, Mismatches: 35, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
185 148 0.98
186 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (185 bp):
GCTTAGACATGGAATCAAATCCGTATGCCTAACCAAACCCACGAAACGAGCATGCGGGCACTCAA
CCAGACGGAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGATCCCCCCTTACGTACTGTCGATC
CTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTTGGAATGAACTCCATAT
Found at i:16968177 original size:159 final size:159
Alignment explanation
Indices: 16967871--16968374 Score: 455
Period size: 159 Copynumber: 3.2 Consensus size: 159
16967861 ACTCCGTATG
* * * * *
16967871 CTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACGAAAC-GAGCGTGT-GGGCACTCA
1 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGGA-CGTGTCGGGCGCTCA
* * ** * * * * * * **
16967934 ACCAGA-CGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTTACGTGCTGTCGA
65 GCC-GACCGGAGAGGCAGAATGCACAAACCGGAGATAGGCCCGATCCCCCC-TGCGTGCTACCGA
* ** **
16967998 TCCTGCTACTGCAACTCTCGGTCTGGTCTGGT
128 TCCCGCTACCACAACTCTCGGTCCAGTCTGGT
* * *
16968030 CTTAGACTTGGAATGAACTCCATATGCCTAAGTCAACCCACAAAA-TGAGCGTG-CGGGCGCTGA
1 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGGA-CGTGTCGGGCGCTCA
* * * * * * *
16968093 GCTTG-CTGGAGAGGCATAATGCACAAATCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGG
65 GC-CGACCGGAGAGGCAGAATGCACAAACCGGAGATAGGCCCGATCCCCC-CTGCGTGCTACCGA
* * * *
16968157 TCCCGCTGCCACAACCCTCGGCCCAG-CTGGGG
128 TCCCGCTACCACAACTCTCGGTCCAGTCT-GGT
* * * *
16968189 CTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGTCGGGCGCTCAG
1 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGGACGTGTCGGGCGCTCAG
* * * * *
16968254 CCGACCGGAGAGGCAGAATGCGCAACCCGGAGATAGGTCCGGTCCCCCCTGTGTGCTACCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAACCGGAGATAGGCCCGATCCCCCCTGCGTGCTACCGATCC
* *
16968319 TGCTACCACAACTCTCGGTCCAGTCTGAT
131 CGCTACCACAACTCTCGGTCCAGTCTGGT
* *
16968348 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTTGGAATGAACTCCATATGC
16968375 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
158 2 0.01
159 222 0.81
160 51 0.19
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGGACGTGTCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAACCGGAGATAGGCCCGATCCCCCCTGCGTGCTACCGATCC
CGCTACCACAACTCTCGGTCCAGTCTGGT
Found at i:16968384 original size:26 final size:26
Alignment explanation
Indices: 16968348--16968400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16968338 CCAGTCTGAT
16968348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16968374 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16968400 C
1 C
16968401 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16969117 original size:26 final size:26
Alignment explanation
Indices: 16969066--16969118 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16969056 GGCTCAAAAT
* * *
16969066 CTTAGACTGGGAATGACCTTCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
16969092 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
16969118 C
1 C
16969119 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:16969286 original size:26 final size:26
Alignment explanation
Indices: 16969250--16969302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16969240 CTGGTCAGAT
16969250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16969276 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16969302 C
1 C
16969303 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16969911 original size:26 final size:26
Alignment explanation
Indices: 16969875--16969925 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16969865 ATGCTGTCGG
16969875 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
16969901 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
16969926 TTTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:16971481 original size:160 final size:158
Alignment explanation
Indices: 16971147--16971650 Score: 385
Period size: 158 Copynumber: 3.2 Consensus size: 158
16971137 AACTCCATAT
* * * * * *
16971147 GCTTAGACATGGAATGAACTCCGTATGCCTACGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAA
* * *
16971212 CCGGTCGAAGAGGCAGAATGCGCAACTGGGGATCGGCCCAATCCCCCCCTGCGTGCTCTCAATCC
66 CCGGTCGAAGAGGCAGAATGCGCAACCGGGGATCAGCCCAATCCCCCCCTACGTGCTCTCAATCC
* * * ** *
16971277 TATTGCCGCAACCCTCGGTCTGGTCTAA
131 TACTGCCACAACCCTCAGTCTGACCGAA
* * *
16971305 TCTTAGA-TTGGGAATGAACTCCATATGCATAAAGTCAACCCACGAAAAGAGCGTGCGGGGCGCT
1 GCTTAGACAT-GGAATGAACTCCATATGCAT-AAGCCAACCCACGAAAAGAGCGTGC-GGGCGCT
* * * * * *
16971369 GAGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCG
63 CAACCGGTCGAAGAGGCAGAATGCGCAA-CCGGGGATCAGCCCAATCCCCCCCTACGTGCTCTC-
* *
16971434 GTAT-C-ACTGCCACAACCCTCAGTC-GACCGAG
126 -AATCCTACTGCCACAACCCTCAGTCTGACCGAA
* * * * * * * * * *
16971465 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCATGAAACGGGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAA
* * ** * * * * *
16971530 TCGGTCGGAGAGGCAGAATGCATAAGCCAGGGATCGGCTCGAT-CCCCCCTGCGTGCTAC-CAAT
66 CCGGTCGAAGAGGCAGAATGCGCAA-CCGGGGATCAGCCCAATCCCCCCCTACGTGCT-CTCAAT
* ** * * * * *
16971593 CCTGCTATCGCAACCCTCGGTCTAGTCTGAT
129 CCTACTGCCACAACCCTCAGTCT-GACCGAA
16971624 G-TTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
16971651 TTAGACTAGG
Statistics
Matches: 271, Mismatches: 62, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
155 2 0.01
156 1 0.00
157 29 0.11
158 88 0.32
159 44 0.16
160 58 0.21
161 46 0.17
162 1 0.00
163 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAA
CCGGTCGAAGAGGCAGAATGCGCAACCGGGGATCAGCCCAATCCCCCCCTACGTGCTCTCAATCC
TACTGCCACAACCCTCAGTCTGACCGAA
Found at i:16971665 original size:26 final size:26
Alignment explanation
Indices: 16971625--16971676 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16971615 TAGTCTGATG
16971625 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
16971651 TTAGACTAGGG-ATGAACTCCGTATGC
1 TTAGACT-GGGAATGAACTCCATATGC
16971677 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:16972981 original size:367 final size:360
Alignment explanation
Indices: 16972315--16972981 Score: 783
Period size: 367 Copynumber: 1.8 Consensus size: 360
16972305 TTGGTCCGAT
* * *
16972315 TGGGGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCAC
1 TGGGACTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGAGTACGGGCAC
* * *
16972380 TCAGCCGGTTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCG
66 TCAGCCGGTCGAAAAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCG
* *
16972445 ATCCTACTATCGTAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGA
131 ATCCTACTATCGTAACCCTCGATCCGATCCAATCTTAGACTGGAAATAAACTCCATATGCTTAGA
* ** * *
16972510 CTGGGGATGAACTCCGTATCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGTTTAGCCAGTCGG
196 CTGGGGATGAACTCCGTATCCTAAGTCAACCCACGAAACGAGAATGCGAGCG-TCA-CCAGTC-G
* * * *
16972575 AGACGTCGGCCGAAGAGGCATAATGTGCAAGTAGGGGATCAACCCGATCCCCCTCTACGTGCTGC
258 -GAC--C-GCAGAAGAGGCAGAATGCGCAAGCAGGGGATCAACCCGATCCCCCTCTACGTGCTGC
16972640 CGATCCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGGC
319 CGATCCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGGC
* * * *
16972682 TGGGACTTAGTCATAGAATGAACT-CTGTATGCCTAAGCCAACCCAGGAAATGAGCGTACGGGCA
1 TGGGACTTAGACATAGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGAGTACGGGCA
** * * * *
16972746 CTCAGTTGGTCGAAAAGGTAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTC
65 CTCAGCCGGTCGAAAAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTC
* *
16972811 GATCCTACTGCTGATCCTGTTACCATAACCCTC-AGTCCGGTCCGATCTTAGACTGGAAATAAAC
130 GATCCTA---CT-AT-C-G------TAACCCTCGA-TCCGATCCAATCTTAGACTGGAAATAAAC
*
16972875 TCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGAATGCGAG
182 TCCATATGCTTAGACTGGGGATGAACTCCGTAT-CCTAAGTCAACCCACGAAACGAGAATGCGAG
** *
16972940 CG-CA-CAGTC-GA-C-CAG-AGAGGCAGGTTGCGCAAGCCGGGGATC
246 CGTCACCAGTCGGACCGCAGAAGAGGCAGAATGCGCAAGCAGGGGATC
16972982 GAACAGGTGG
Statistics
Matches: 252, Mismatches: 33, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
366 2 0.01
367 138 0.55
368 2 0.01
370 3 0.01
371 2 0.01
372 1 0.00
373 3 0.01
376 5 0.02
378 2 0.01
379 65 0.26
380 29 0.12
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (360 bp):
TGGGACTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGAGTACGGGCAC
TCAGCCGGTCGAAAAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCG
ATCCTACTATCGTAACCCTCGATCCGATCCAATCTTAGACTGGAAATAAACTCCATATGCTTAGA
CTGGGGATGAACTCCGTATCCTAAGTCAACCCACGAAACGAGAATGCGAGCGTCACCAGTCGGAC
CGCAGAAGAGGCAGAATGCGCAAGCAGGGGATCAACCCGATCCCCCTCTACGTGCTGCCGATCCC
GCTGTCGGTCCTGCTACCACAACCCTCGGTCCGGC
Found at i:16973977 original size:159 final size:157
Alignment explanation
Indices: 16973615--16973998 Score: 421
Period size: 157 Copynumber: 2.4 Consensus size: 157
16973605 AACTCTGTAT
* * *
16973615 GCTTACACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * **
16973680 CCGATCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCCTGGTCCCCTTGCATGTTGTCTATCTT
66 CCGACCGAAAAGGCAAAATGCGCAAGTCGAGGATCGACCCGGTCCCCTTACATGCTGCCGATCCC
** *
16973745 GCTGCTGCAACCCTCAGTCTGGTCTGA
131 GCTGCCACAACCCTCAGTCCGGTCTGA
* * * * *
16973772 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
16973836 GCCGACCGAAAAGGCATAATGCGCAATTCGGGGATCGACCCGGTCCACCTCTACATGCTGCCGGT
65 GCCGACCGAAAAGGCAAAATGCGCAAGTCGAGGATCGACCCGGTCC-CCT-TACATGCTGCCGAT
** *
16973901 CCCGCTGCCACAACCCTTGGTCCGG-CTTGG
128 CCCGCTGCCACAACCCTCAGTCCGGTC-TGA
* * * *
16973931 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
16973996 CCG
66 CCG
16973999 GTCAGAGAGG
Statistics
Matches: 184, Mismatches: 38, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
156 1 0.01
157 92 0.50
158 4 0.02
159 86 0.47
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAAAGGCAAAATGCGCAAGTCGAGGATCGACCCGGTCCCCTTACATGCTGCCGATCCC
GCTGCCACAACCCTCAGTCCGGTCTGA
Found at i:16974074 original size:159 final size:159
Alignment explanation
Indices: 16973615--16974077 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 159
16973605 AACTCTGTAT
* * *
16973615 GCTTACACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
16973680 CCGATCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCCTGGT--CCCCTTGCATGTTGTCTATC
66 CCGGTCAGAGAGGCAAAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCCTGCATGCTGCCGATC
* *
16973743 TTGCTGCTGCAACCCTCAGTCTGGTCTGA
131 CTGCTGCTGCAACCCTCAGTCCGGTCTGA
* * * * *
16973772 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
16973836 GCC-GACCGAAAAGGCATAATGCGCAA-TTCGGGGATCGACCCGGTCCACCTCTACATGCTGCCG
65 GCCGGTCAG-AGAGGCAAAATGCGCAAGTT-GGGGATCGGCCCGGTCCCCCCCTGCATGCTGCCG
* * ** ** *
16973899 GTCCCGCTGCCACAACCCTTGGTCCGG-CTTGG
128 ATCCTGCTGCTGCAACCCTCAGTCCGGTC-TGA
* * * *
16973931 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
16973996 CCGGTCAGAGAGGCAGAATGCACAAGTTGGGGATCGGCCCGATCCCCCCCTGCGA-GCTGCCGAT
66 CCGGTCAGAGAGGCAAAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCCTGC-ATGCTGCCGAT
*
16974060 CCTACTGCTGCAACCCTC
130 CCTGCTGCTGCAACCCTC
16974078 GATCCAATCC
Statistics
Matches: 238, Mismatches: 58, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
156 4 0.02
157 84 0.35
158 1 0.00
159 142 0.60
160 7 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCAGAGAGGCAAAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCCTGCATGCTGCCGATC
CTGCTGCTGCAACCCTCAGTCCGGTCTGA
Found at i:16974129 original size:26 final size:26
Alignment explanation
Indices: 16974091--16974143 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16974081 CCAATCCAAT
16974091 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
16974117 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAACGAACTCCGTATG
16974143 C
1 C
16974144 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:16974524 original size:159 final size:158
Alignment explanation
Indices: 16974116--16974555 Score: 404
Period size: 159 Copynumber: 2.8 Consensus size: 158
16974106 AACTCCGTAT
* * *
16974116 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * ** * * *
16974181 TCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGA-CTGACCCGGTCCCCCAT-TGCATGCTATCGT
66 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATC-G-CCCGGTCCCCC-TCTACGTGCTGTCGT
* * * * * *
16974244 TTATGCTATCGCAACCCTCGGTCTGGTTCGA
128 CTACGCTACCACAACCCTCGGTCCGGCTCGA
* * * * * * * * * *
16974275 TCTTACAC-TGGGAATGAACTTCGTACGCATAAGTCAACCCATGAAACGAGCATGTGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * *
16974339 GCCTGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGGT
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATC-GCCCGGTCCCCCTCTACGTGCTGTC-GT
* * * *
16974404 CT-CGCTGCCACAACCCTTGGTCCGGCTGGG
128 CTACGCTACCACAACCCTCGGTCCGGCTCGA
* * * *
16974434 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
** * *
16974499 CCGGCCGGAGAGGCAGAATGCACAAGATGGGGATCGACCGGTACCCC-CTACGTGCTG
66 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGCCCGGTCCCCCTCTACGTGCTG
16974556 CCGATCCTGC
Statistics
Matches: 218, Mismatches: 58, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
157 10 0.05
158 11 0.05
159 191 0.88
160 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGCCCGGTCCCCCTCTACGTGCTGTCGTCTA
CGCTACCACAACCCTCGGTCCGGCTCGA
Found at i:16974532 original size:503 final size:505
Alignment explanation
Indices: 16973587--16974702 Score: 1425
Period size: 503 Copynumber: 2.2 Consensus size: 505
16973577 TGTGGCTCAA
* * *
16973587 AATCTTAGGCTGGGAATGAACTCTGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCAAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAA
** * * *
16973652 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGTCGAGGATCGG
66 CCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGA
* * * *
16973717 CCTGGTCCCCTTGCATGTTGTCTATCTTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTG
131 CCCGGTCCCCTTGCATGCTATCTATCTTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTACACTG
* * *
16973782 GGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAA
196 GGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCATGCGAGCGCTGAGCCGACCGAAA
* ** *
16973847 AGGCATAATGCGCAATTCGGGGATCGACCCGGTCCACCTCTACATGCTGCCGGTCCCGCTGCCAC
261 AGGCATAATGCACAAGCCGGGGATCGACCCAGTCCACCTCTACATGCTGCCGGTCCCGCTGCCAC
* *
16973912 AACCCTTGGTCCGGCTTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
326 AACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * *
16973977 CGGGCGTGCGGGAGCTCAGCCGGTCAGAGAGGCAGAATGCACAAGTTGGGGATCGGCCCGATCCC
391 CGGGCGTGCGGGAGCTCAACCGGCCAGAGAGGCAGAATGCACAAGATGGGGATC-GACCGAT-AC
*
16974042 CCCCTGCGAGCTGCCGAT-C-CTACT-G-C-TG-CAACCCTCGATCCAATCC
454 CCCCTACGAGCTGCCGATCCGCTACTGGACTTGCCAACCCTCGATCCAATCC
* *
16974088 AATCTTAGACTGGGAACGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAA
* * * * * *
16974153 CCCATGAAACAAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGA-CTG
66 CCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATC-G
* *
16974217 ACCCGGTCCCCCATTGCATGCTATCGT-T-TATGCT-ATCGCAACCCTCGGTCTGGT-TCGATCT
130 ACCCGGT-CCCC-TTGCATGCTATC-TATCT-TGCTGCT-GCAACCCTCAGTCTGGTCT-GATCT
* * *
16974278 TACACTGGGAATGAACT-TCGTACGCATAAGTCAACCCATGAAACGAGCATGTGAGTGCTGAGCC
189 TACACTGGGAATGAACTCT-GTACGCATAAGTCAACCCACGAAACGAGCATGCGAGCGCTGAGCC
* * * *
16974342 TG-CCGAAGAGGCATAATGCACAAGCCGGGGATC-AGCCCAGTCCCCCTCTACGTGCTGTCGGTC
253 -GACCGAAAAGGCATAATGCACAAGCCGGGGATCGA-CCCAGTCCACCTCTACATGCTGCCGGTC
*
16974405 TCGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
316 CCGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* *
16974470 ACCCACGAAACGGGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCACAAGATGGGGATCG
381 ACCCACGAAACGGGCGTGCGGGAGCTCAACCGGCCAGAGAGGCAGAATGCACAAGATGGGGATCG
* * * *
16974535 ACCGGTACCCCCTACGTGCTGCCGATCCTGCTGCTGGTACTTTTGCCACAACCCTCGATCCGATC
446 ACCGATACCCCCTACGAGCTGCCGATCC-GCTACTGG-AC--TTG-C-CAACCCTCGATCCAATC
16974600 C
505 C
* * *
16974601 CATCTTAGACTAGGAATGAACTCCGTATGC-TAGACATGGGAATGAACTCCGTATGCCTAATCCA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAA-GCA
* * * *
16974665 ATCCTACGAAACAAACGTGCGGGTGCTCAGCCGGTCGG
64 AACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCGG
16974703 GCAAAGCAGA
Statistics
Matches: 529, Mismatches: 62, Indels: 35
0.85 0.10 0.06
Matches are distributed among these distances:
500 1 0.00
501 134 0.25
502 15 0.03
503 263 0.50
504 6 0.01
505 1 0.00
507 1 0.00
510 2 0.00
512 7 0.01
513 66 0.12
514 33 0.06
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (505 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAA
CCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGA
CCCGGTCCCCTTGCATGCTATCTATCTTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTACACTG
GGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCATGCGAGCGCTGAGCCGACCGAAA
AGGCATAATGCACAAGCCGGGGATCGACCCAGTCCACCTCTACATGCTGCCGGTCCCGCTGCCAC
AACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTGCGGGAGCTCAACCGGCCAGAGAGGCAGAATGCACAAGATGGGGATCGACCGATACCC
CCTACGAGCTGCCGATCCGCTACTGGACTTGCCAACCCTCGATCCAATCC
Found at i:16975148 original size:26 final size:26
Alignment explanation
Indices: 16975112--16975164 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16975102 CCGGTTCGAT
* *
16975112 CTTAGACTGGGAATGAACGGCGTATG
1 CTTAAACTGGGAATGAACGCCGTATG
* *
16975138 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACGCCGTATG
16975164 C
1 C
16975165 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACGCCGTATG
Found at i:16975880 original size:26 final size:26
Alignment explanation
Indices: 16975844--16975896 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16975834 GGCTCAAAAT
16975844 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16975870 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16975896 C
1 C
16975897 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16978206 original size:26 final size:26
Alignment explanation
Indices: 16978170--16978225 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16978160 TCGATCTGAT
16978170 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16978196 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16978222 CTTA
1 CTTA
16978226 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16978884 original size:26 final size:26
Alignment explanation
Indices: 16978855--16978907 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16978845 CCAGTCCGAT
16978855 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16978881 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16978907 C
1 C
16978908 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16981612 original size:26 final size:26
Alignment explanation
Indices: 16981583--16981635 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16981573 TTGGTCTGAT
16981583 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
16981609 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16981635 C
1 C
16981636 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16982001 original size:26 final size:26
Alignment explanation
Indices: 16981963--16982015 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16981953 TTGGTCTGAT
16981963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16981989 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16982015 C
1 C
16982016 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16982252 original size:160 final size:156
Alignment explanation
Indices: 16981988--16982451 Score: 502
Period size: 160 Copynumber: 2.9 Consensus size: 156
16981978 AACTCCGTAT
*
16981988 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * *
16982053 TCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCTCCCCCTGCGTGCTATCGATC
65 CCGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCAGCCCGGTC-CCCCCTGCGTGCTGTCGATC
16982118 CTGCTTCTGCAACCCTCAGATTGGTCT-AG
129 CTGCTTC-GCAACCCTCAGATTGG-CTGAG
* * * *
16982147 TCTTAGAC-TGGGAATAAACTGCGTATGCCTAAGTCAACCCCACGAAACGAGCGTGTGGGCGCTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAA-CCCACGAAACGAGCGTGTGGGCGCTC
* * * * * **
16982211 AGCCGATCGGAGAGGCATAATGAGAAAGCCAGGGATCAGCCCGATCCCCCTCTATGTGCTGTC-A
63 AGCCGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGA
* * * * *
16982275 GTCCCGCTACCACAACCCTCAGTTTGGCTGGG
127 -TCCTGCT-TCGCAACCCTCAGATTGGCTGAG
* * * * * *
16982307 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCATGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * ** *
16982372 CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCTTGCGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
16982437 TGCTGTCGCAACCCT
130 TGCT-TCGCAACCCT
16982452 TGATCCGGTT
Statistics
Matches: 247, Mismatches: 49, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
158 24 0.10
159 100 0.40
160 121 0.49
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTTCGCAACCCTCAGATTGGCTGAG
Found at i:16988262 original size:26 final size:26
Alignment explanation
Indices: 16988226--16988276 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16988216 CTGGTCTGAT
*
16988226 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
16988252 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16988277 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16989198 original size:12 final size:12
Alignment explanation
Indices: 16989181--16989210 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
16989171 CCCTCTGTGT
16989181 GCTGCCGATCCC
1 GCTGCCGATCCC
16989193 GCTGCCGATCCC
1 GCTGCCGATCCC
*
16989205 ACTGCC
1 GCTGCC
16989211 ACAACCCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.50, G:0.23, T:0.17
Consensus pattern (12 bp):
GCTGCCGATCCC
Found at i:16989589 original size:328 final size:328
Alignment explanation
Indices: 16989135--16989739 Score: 834
Period size: 328 Copynumber: 1.8 Consensus size: 328
16989125 GCTGACCGAA
** **
16989135 GAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTGCCGATCCCGCTGCCG
1 GAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTCTGTGTGCTGCCGATCCCGCTGCCG
*
16989200 ATCCCACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
66 ATCCCACTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* ** * * * * *
16989265 CCAACACACGAATCGGGCGTGCGGGCGCTCAGTCGGTCGAAGTGGCAGAATGCACAAGCCGGGGA
131 CCAACACACGAAACGAACGTGCGGGCACTCAGCCGATCGAAGAGGCAGAATGCACAAGCCAGGGA
* * *
16989330 TCGGT-TCGATCCCCCCTACGTGCTACAGATCCTGCTACCGTAACCCTTGATCTGGTCTGATCTT
196 TC-GTCTCAATCCCCCCTACGTGCTACAGATCCTGCTACCGTAACCCTCGATCTGGTCCGATCTT
16989394 AGACTAGGAATGAACTCCATATGCTTAGACTGGGGACGAACTTCGTATGCCTAAGTCAACCCATG
260 AGACTAGGAATGAACTCCATATGCTTAGACTGGGGACGAACTTCGTATGCCTAAGTCAACCCATG
16989459 AAAC
325 AAAC
* * * * * * **
16989463 GAGGCATAATGCACAAGCCGGGGATCAACCTGGTCCCCCTCTGTGTGTTGTCGATCCTGCTGTTG
1 GAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTCTGTGTGCTGCCGATCCCGCTGCCG
* ** * * * * *
16989528 GTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTTGACATGGAATGACCTGCGTATGCCTAAG
66 ATCCCACTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * *
16989593 CCAACCCACGAAACGAACGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGA
131 CCAACACACGAAACGAACGTGCGGGCACTCAGCCGATCGAAGAGGCAGAATGCACAAGCCAGGGA
* *
16989658 TCGTCTCAATCCCCCCTACGTGCTACAGATCCTGCTATCGTAACCCTCGGTCTGGTCCGATCTTA
196 TCGTCTCAATCCCCCCTACGTGCTACAGATCCTGCTACCGTAACCCTCGATCTGGTCCGATCTTA
* * *
16989723 GATTGGGAATGGACTCC
261 GACTAGGAATGAACTCC
16989740 GTTTTGTGGC
Statistics
Matches: 236, Mismatches: 40, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
327 2 0.01
328 234 0.99
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (328 bp):
GAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTCTGTGTGCTGCCGATCCCGCTGCCG
ATCCCACTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACACACGAAACGAACGTGCGGGCACTCAGCCGATCGAAGAGGCAGAATGCACAAGCCAGGGA
TCGTCTCAATCCCCCCTACGTGCTACAGATCCTGCTACCGTAACCCTCGATCTGGTCCGATCTTA
GACTAGGAATGAACTCCATATGCTTAGACTGGGGACGAACTTCGTATGCCTAAGTCAACCCATGA
AAC
Found at i:16989792 original size:11 final size:10
Alignment explanation
Indices: 16989767--16989792 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
16989757 CTCGTTTTCT
16989767 ATTTTTCAAG
1 ATTTTTCAAG
16989777 ATTTTTCAAG
1 ATTTTTCAAG
16989787 ATTTTT
1 ATTTTT
16989793 GAAATGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.58
Consensus pattern (10 bp):
ATTTTTCAAG
Found at i:16990505 original size:26 final size:26
Alignment explanation
Indices: 16990469--16990522 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16990459 CCCCCCTGTG
16990469 TGCTTAGACTGGGAAAGAACTCCATA
1 TGCTTAGACTGGGAAAGAACTCCATA
* * *
16990495 TGCTTAGACTGGGGATGAACTCCGTA
1 TGCTTAGACTGGGAAAGAACTCCATA
16990521 TG
1 TG
16990523 ACTATGTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
TGCTTAGACTGGGAAAGAACTCCATA
Found at i:16990893 original size:184 final size:184
Alignment explanation
Indices: 16990680--16991049 Score: 482
Period size: 184 Copynumber: 2.0 Consensus size: 184
16990670 TCCTACTGGG
*
16990680 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
* * *
16990745 TCGGT-TGAAGAGGCAGAATGAGTAAGAC-AGGGATCG-GCTTGGTCCCTCCCTACGTGCTGTCG
66 TCGGTCCGAA-AGGCAGAATGAGTAAG-CTAGGGATCGATC-CGGTCCCT-CCTACGTGCTGTCG
** * *
16990807 ATCCTGCTA-CTGCAACCT-TTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
127 ATCCTGCTATC-G-AACCTCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* ** *
16990865 GCTT-GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
* * **
16990929 TCGGTCCGAAAGGCAGAATGCGTAAGCTGGGGATCGATCCGGTCCCTCCTGTGTGCTGTCGATCC
66 TCGGTCCGAAAGGCAGAATGAGTAAGCTAGGGATCGATCCGGTCCCTCCTACGTGCTGTCGATCC
* *
16990994 TGCTATCGTAGCTCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTATCGAACCTCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
16991048 GC
1 GC
16991050 CTAAGTCAAC
Statistics
Matches: 162, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
182 3 0.02
183 61 0.38
184 90 0.56
185 8 0.05
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
TCGGTCCGAAAGGCAGAATGAGTAAGCTAGGGATCGATCCGGTCCCTCCTACGTGCTGTCGATCC
TGCTATCGAACCTCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16991119 original size:158 final size:158
Alignment explanation
Indices: 16990865--16991307 Score: 484
Period size: 159 Copynumber: 2.8 Consensus size: 158
16990855 AACTCTGTAT
*
16990865 GCTT-GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * *
16990929 TCGGTCCGAA-AGGCAGAATGCGTAAGCTGGGGATCGATCCGGTCCCTCCTGTGTGCTGTCGATC
66 -CCGACCAAAGAGGCAGAATGCGTAAGCTGGGGATCGATCCGGTCCCTCCTGTGTGCTGTCGATC
* * * * * * *
16990993 CTGCTATCGTAGCTCTC-AGTTCGATCT-GA
130 CCGCTACCATAACCCTCGA-TCCG-GCTGGA
* * * * *
16991022 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGGGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * * * * * *
16991086 GCCAACCAAAGAGGCATAATGCATAA-TTCGGGGATCGACCCGGTCTCTCTCTGTGTGCTGTCAA
65 GCCGACCAAAGAGGCAGAATGCGTAAGCT-GGGGATCGATCCGGTCCCTC-CTGTGTGCTGTCGA
*
16991150 TCCCGCTACCATAACCCTCGATCCGGCTGGG
128 TCCCGCTACCATAACCCTCGATCCGGCTGGA
* * * *
16991181 GCTTAGACATGAAATTAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * * * *
16991246 CCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGTCTGGTCCCTCCTGCGTGCTGTCGA
66 CCGACCAAAGAGGCAGAATGCGTAAGCTGGGGATCGATCCGGTCCCTCCTGTGTGCTGTCGA
16991308 ACCTACTGCC
Statistics
Matches: 231, Mismatches: 46, Indels: 17
0.79 0.16 0.06
Matches are distributed among these distances:
157 10 0.04
158 98 0.42
159 120 0.52
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCGACCAAAGAGGCAGAATGCGTAAGCTGGGGATCGATCCGGTCCCTCCTGTGTGCTGTCGATCC
CGCTACCATAACCCTCGATCCGGCTGGA
Found at i:16992090 original size:26 final size:26
Alignment explanation
Indices: 16992052--16992104 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16992042 GGCTCAAACT
* *
16992052 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
16992078 CTTAGACAT-GGAAAGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
16992104 C
1 C
16992105 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:16992657 original size:26 final size:26
Alignment explanation
Indices: 16992606--16992657 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
16992596 CGGATCTGAT
* *
16992606 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
*
16992632 CTTAGACAT-GGAACGAACTCTATATG
1 CTTAGAC-TGGGAACGAACTCCATATG
16992658 ACTAAGCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:16993003 original size:159 final size:157
Alignment explanation
Indices: 16992631--16993126 Score: 498
Period size: 158 Copynumber: 3.1 Consensus size: 157
16992621 AACTCCGTAT
* * * *
16992631 GCTTAGACATGGAACGAACTCTATATGACTAAGCCAACCCACGAAACAAGCGTGCGGGCTCTCAA
1 GCTTAGACATGGAATGAACTC-ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * **
16992696 CCGGCCGAAGAGGCAGAATGCGTAAATCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGGCCGAAGAGGCAGAATACGTAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
*** *
16992761 TAC-TT-CTGGAACCCTGGGTCCGATCTGA
130 --CGTTGCCACAACCCTCGGTCCGATCTGA
* * * *
16992789 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAAC-TCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
16992853 ATCGGCCGGAGAGGCATAATACGTAAGTCGAGGATCGGCCCGGTCCCCCTATGCGTGCTACCGAT
64 ACCGGCCGAAGAGGCAGAATACGTAAGTCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTACCGAT
* *
16992918 CCCGTTGCCACAACCCTCGGTCTGAT-TGGG
128 CCCGTTGCCACAACCCTCGGTCCGATCT-GA
* * * * * * * *
16992948 GCTTAGACATGGAGTGAACTACCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACT-CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
16993013 CCGACCGAAGAGGCAGAATACGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
65 CCGGCCGAAGAGGCAGAATACGTAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
* * * * *
16993078 TGCTGCCACAACCCTCAGTCCGGTCCGA
130 CGTTGCCACAACCCTCGGTCCGATCTGA
*
16993106 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
16993127 CGTATGCTTA
Statistics
Matches: 275, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 149 0.54
159 121 0.44
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGAAGAGGCAGAATACGTAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCC
GTTGCCACAACCCTCGGTCCGATCTGA
Found at i:16993136 original size:26 final size:26
Alignment explanation
Indices: 16993107--16993158 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16993097 CCGGTCCGAT
*
16993107 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
** *
16993133 CTTAGTTTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16993159 GCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16994738 original size:26 final size:26
Alignment explanation
Indices: 16994688--16994740 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16994678 CTGGTCCGAT
**
16994688 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16994714 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16994740 C
1 C
16994741 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16999184 original size:26 final size:26
Alignment explanation
Indices: 16999143--16999195 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16999133 CTGATCTAAT
16999143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16999169 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
16999195 C
1 C
16999196 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16999608 original size:158 final size:159
Alignment explanation
Indices: 16999332--16999701 Score: 363
Period size: 158 Copynumber: 2.3 Consensus size: 159
16999322 CTCGGTCCGG
*
16999332 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGCCG
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGCCA
** * * * *
16999397 CTCAACCGATTGGAGAGGTAGAATGTGCAACCTGGGGACTGGCCCGATCCCCCT-TACGTGCTGT
66 CTCAACCGAACGGAGAGGCAGAATGCGCAACCTGAGGACTGACCCGATCCCCCTCTACGTGCTGT
16999461 CGATCCTGCTACCGCAACCCTCGACCCGA
131 CGATCCTGCTACCGCAACCCTCGACCCGA
* * * *
16999490 TCCGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCATGAAACGAGCGTTCAGG-C
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATAC-GGCC
* * * * * * * *
16999554 ACTGAGCCGAACGGAGAGGCATAATGCGCAA-GTCGAGGATTGACTCGGTCCCCCTCTATGTGCT
65 ACTCAACCGAACGGAGAGGCAGAATGCGCAACCT-GAGGACTGACCCGATCCCCCTCTACGTGCT
** * ** * * * *
16999618 ACCGGTCCCACTGCCACAACCTTCGATCCGA
129 GTCGATCCTGCTACCGCAACCCTCGACCCGA
* ** * * *
16999649 -CTGGGGCTGAGACAT-GGAATGAACACCCTATGCCTAAGCCAACCCATGAAACG
1 TC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
16999702 GGCGTGCGGG
Statistics
Matches: 171, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 97 0.57
159 72 0.42
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGCCA
CTCAACCGAACGGAGAGGCAGAATGCGCAACCTGAGGACTGACCCGATCCCCCTCTACGTGCTGT
CGATCCTGCTACCGCAACCCTCGACCCGA
Found at i:16999865 original size:26 final size:26
Alignment explanation
Indices: 16999813--16999865 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16999803 TTGATCCAAT
* *
16999813 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
16999839 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
16999865 C
1 C
16999866 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:17000321 original size:685 final size:685
Alignment explanation
Indices: 16999454--17000760 Score: 1749
Period size: 685 Copynumber: 1.9 Consensus size: 685
16999444 TCCCCCTTAC
*
16999454 GTGCTGTCGATCCTGCTACCGCAACCCTCGACCCGATCCGATCTTAGACTGGGAATGAACTCCGT
1 GTGCTGTCGATCCTGCTACCGCAACCCTCGACCCGATCCGATCTTAGACTGGGAATGAACTCCAT
* * * * *
16999519 GTGCCTAAGTCAACCCATGAAACGAGCGTTCAGGCACTGAGCCGAACGGAGAGGCATAATGCGCA
66 ATGCATAAGTCAACCCATGAAACGAGCGTACAGGCACTGAGCCGAACGAAGAGGCATAATGCACA
* * ** * * *
16999584 AGTCGAGGATTGACTCGGTCCCCCTCTATGTGCTACCGGTCCCACTGCCACAACCTTC-GATCCG
131 AGCCGAGGATGGACTCGGTCCCCCTCTACATACTACCGGTCCCACCGCCACAACCCTCTG-TCCG
* *
16999648 ACTGGGGCTGAGACATGGAATGAACACCCTATGCCTAAGCCAACCCA-TGAAACGGGCGTGCGGG
195 ACTGGGGCTGAGACATGGAATGAACACCCTAAGCCTAAGCCAACCCACAG-AACGGGCGTGCGGG
* *** * *
16999712 CGCTCAGCTGGTCAGAGAGGCAGAATGCATAAGATGGGGATCGGCTCAGTTCCCCCTGCGTGCTT
259 CGCTCAGCCGGTCAGAGAGGCAGAATGCATAAGACAAGGATCGACTCAGTTCCCCCTGCGTGCTA
* * * * *
16999777 TCAATCCTGCTGTTGCAACCCTCGGTTTGATCCAATCTTAGATTGGGAATGAACTCCATATGCTT
324 TCAATCCTACTGTCGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTT
*
16999842 AGACTGGGGATGAACTCCGCATGCCTAAGTCAACCAACGAAACGAGCGTGTGAGCGCTCAGTCGG
389 AGACTGGGGATGAACTCCGCATGCCTAAGTCAACCAACGAAACGAGCGTATGAGCGCTCAGTCGG
** * * ** *
16999907 CCGTAGAGGTCAGTCAGAGAGGCATAATGTGCAAGCTTGGGATCAGCCCGGTCCCACTATGCGTG
454 CCAAAGAGGCCAGTCAGAAAGGCATAATGTGCAAGCCAGGGATCAGCCCGATCCCACTATGCGTG
* ** *
16999972 CTACCAATCTCGCTGTCAGTCCTGCTACCACAACCCTCGGTCTGA-CTGGGGCTTAGACATGGAA
519 CTACCAATCCCGCTACCAGTCCTGCTACCACAACCCTCGGT-TCACCTGGGGCTTAGACATGGAA
* *
17000036 TGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGTGGGCACTCAGTCGGCTGGAGAGGC
583 TGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGTCGGCTGGAGAGGC
17000101 AAAATGCGCAAGTCAAGGATCGGCTCGGTCCATCGTGT
648 AAAATGCGCAAGTCAAGGATCGGCTCGGTCCATCGTGT
* ** * ** * *
17000139 GTGCTGTCGATCTTGCTGTCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCAT
1 GTGCTGTCGATCCTGCTACCGCAACCCTCGACCCGATCCGATCTTAGACTGGGAATGAACTCCAT
* * **
17000204 ATGCATAATTCAACCCATGAAATGAGCGTACAGGCACTGAGCCGGTCGAAGAGGCATAATGCACA
66 ATGCATAAGTCAACCCATGAAACGAGCGTACAGGCACTGAGCCGAACGAAGAGGCATAATGCACA
* * * * ** *
17000269 AGCCGGGGATCGGCCT-GGTCCCCCTCTACATACTGCCGGTTCTGCCGCCACAACCCTCTGTCTG
131 AGCCGAGGAT-GGACTCGGTCCCCCTCTACATACTACCGGTCCCACCGCCACAACCCTCTGTCCG
* * *
17000333 ACTGGGGCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACAGAATGGGCGTGCGGGC
195 ACTGGGGCTGAGACATGGAATGAACACCCTAAGCCTAAGCCAACCCACAGAACGGGCGTGCGGGC
* ** * *
17000398 GCTCAGCCGGTGAGAGAGGCAGAATGTGTAAGCCAAGGATCGACTCGGTTCCCCCTGCGTGCTAT
260 GCTCAGCCGGTCAGAGAGGCAGAATGCATAAGACAAGGATCGACTCAGTTCCCCCTGCGTGCTAT
* * * ** * *
17000463 CGATCCTACTGTCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTA
325 CAATCCTACTGTCGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * * *
17000528 GACTGGGGATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGTGTATGGGCGCTCAGTCGGC
390 GACTGGGGATGAACTCCGCATGCCTAAGTCAACCAACGAAACGAGCGTATGAGCGCTCAGTCGGC
* * * * *
17000593 CAAAGAGGCCAGTCGGAAAGGCATAATGTGCAAGCCAGGGATCAGCCTGATCCCCCTCTGTGTGC
455 CAAAGAGGCCAGTCAGAAAGGCATAATGTGCAAGCCAGGGATCAGCCCGATCCCACTATGCGTGC
* *
17000658 TACCAATCCCGCTACCGGTCCTGCTGCCACAACCCTCGGTTCACCTGGGGCTTAGACATGGAATG
520 TACCAATCCCGCTACCAGTCCTGCTACCACAACCCTCGGTTCACCTGGGGCTTAGACATGGAATG
* * *
17000723 AACTCTATATGCCTAAGCTAACCCACGAAATGAGCGTG
585 AACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTG
17000761 CAGGTGTCAC
Statistics
Matches: 529, Mismatches: 89, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
684 2 0.00
685 522 0.99
686 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (685 bp):
GTGCTGTCGATCCTGCTACCGCAACCCTCGACCCGATCCGATCTTAGACTGGGAATGAACTCCAT
ATGCATAAGTCAACCCATGAAACGAGCGTACAGGCACTGAGCCGAACGAAGAGGCATAATGCACA
AGCCGAGGATGGACTCGGTCCCCCTCTACATACTACCGGTCCCACCGCCACAACCCTCTGTCCGA
CTGGGGCTGAGACATGGAATGAACACCCTAAGCCTAAGCCAACCCACAGAACGGGCGTGCGGGCG
CTCAGCCGGTCAGAGAGGCAGAATGCATAAGACAAGGATCGACTCAGTTCCCCCTGCGTGCTATC
AATCCTACTGTCGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAG
ACTGGGGATGAACTCCGCATGCCTAAGTCAACCAACGAAACGAGCGTATGAGCGCTCAGTCGGCC
AAAGAGGCCAGTCAGAAAGGCATAATGTGCAAGCCAGGGATCAGCCCGATCCCACTATGCGTGCT
ACCAATCCCGCTACCAGTCCTGCTACCACAACCCTCGGTTCACCTGGGGCTTAGACATGGAATGA
ACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGTCGGCTGGAGAGGCAAA
ATGCGCAAGTCAAGGATCGGCTCGGTCCATCGTGT
Found at i:17000416 original size:159 final size:158
Alignment explanation
Indices: 16999999--17000446 Score: 381
Period size: 159 Copynumber: 2.8 Consensus size: 158
16999989 AGTCCTGCTA
*
16999999 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * * * *
17000064 GGAACGAGCGTGTGGGCACTCAGTCGGCTG-GAGAGGCAAAATGCGCAAGTCAAGGATCGGCTCG
66 AGAATGAGCGTGCGGGCACTCAGCCGG-TGAGAGAGGCAAAATGCACAAGCCAAGGATCGGCTCG
*** * * *
17000128 GTCCATCGTGTGTGCTGTCGATCTTGCTG
130 GTCCATCGTACATACTGCCGATCTTGCCG
* ** * ** * * **
17000157 TCGTAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTTCATATGCATAATTCAACCC
1 CCACAACCCTCGGTCTGA-CTGGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCC
* * * * * **
17000220 A-TGAAATGAGCGTACAGGCACTGAGCCGGTCGA-AGAGGCATAATGCACAAGCCGGGGATCGGC
64 ACAG-AATGAGCGTGCGGGCACTCAGCCGGT-GAGAGAGGCAAAATGCACAAGCCAAGGATCGGC
* *
17000283 -CTGGTCCCCCTC-TACATACTGCCGGT-TCTGCCG
127 TC-GGT--CCATCGTACATACTGCCGATCT-TGCCG
* * *
17000316 CCACAACCCTCTGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * *** *
17000381 AGAATGGGCGTGCGGGCGCTCAGCCGGTGAGAGAGGCAGAATGTGTAAGCCAAGGATCGACTCGG
66 AGAATGAGCGTGCGGGCACTCAGCCGGTGAGAGAGGCAAAATGCACAAGCCAAGGATCGGCTCGG
17000446 T
131 T
17000447 TCCCCCTGCG
Statistics
Matches: 219, Mismatches: 57, Indels: 27
0.72 0.19 0.09
Matches are distributed among these distances:
157 4 0.02
158 101 0.46
159 107 0.49
160 7 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
AGAATGAGCGTGCGGGCACTCAGCCGGTGAGAGAGGCAAAATGCACAAGCCAAGGATCGGCTCGG
TCCATCGTACATACTGCCGATCTTGCCG
Found at i:17000534 original size:26 final size:26
Alignment explanation
Indices: 17000498--17000550 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17000488 CTGGTCTGAT
*
17000498 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17000524 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17000550 C
1 C
17000551 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17006760 original size:26 final size:26
Alignment explanation
Indices: 17006724--17006776 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17006714 TCGATCTGAT
17006724 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
* *
17006750 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
17006776 C
1 C
17006777 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:17007107 original size:26 final size:26
Alignment explanation
Indices: 17007066--17007118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17007056 TCGGTCCAAT
*
17007066 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17007092 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
17007118 C
1 C
17007119 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17008603 original size:170 final size:170
Alignment explanation
Indices: 17008327--17008641 Score: 409
Period size: 170 Copynumber: 1.9 Consensus size: 170
17008317 TAGATTGGGG
* * * *
17008327 ATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCCCACCCAGCCAGAGAGG
1 ATGAACCTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCCCACCCAGCCAGAGAGG
* * * * * * *
17008392 CATAATGCGCAAGTCGGGGATCAGCCTGGTCCCCTCTGCATG-TAGCCAATCCCGTTGCTGGTCA
66 CAGAATGCACAAGTCAGAGATCAGCCCGGTCCCCCCTGCATGCTA-CCAATCCCGCTGCTGGTCA
17008456 TGCTGCCACAACCCTCGATCTGCCTAGGGCTTAGACATGGA
130 TGCTGCCACAACCCTCGATCTGCCTAGGGCTTAGACATGGA
* * * ** *
17008497 ATGAACCTCGTATGCCTAAGCCAAGCCATGAAACGAGCATGCGGGCGCTCAGCTGGCCGGAGAGG
1 ATGAACCTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCCCACCCAGCCAGAGAGG
* * *
17008562 CAGAATGCACAAGTCAGAGATC-GACCCGGTCCCCCCTGCATGCTACCGATCCTGCTGCTGGTCT
66 CAGAATGCACAAGTCAGAGATCAG-CCCGGTCCCCCCTGCATGCTACCAATCCCGCTGCTGGTCA
*
17008626 TGCTGCCGCAACCCTC
130 TGCTGCCACAACCCTC
17008642 AGTCTAGTAT
Statistics
Matches: 122, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
169 1 0.01
170 119 0.98
171 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (170 bp):
ATGAACCTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCCCACCCAGCCAGAGAGG
CAGAATGCACAAGTCAGAGATCAGCCCGGTCCCCCCTGCATGCTACCAATCCCGCTGCTGGTCAT
GCTGCCACAACCCTCGATCTGCCTAGGGCTTAGACATGGA
Found at i:17008661 original size:170 final size:169
Alignment explanation
Indices: 17008327--17008681 Score: 396
Period size: 170 Copynumber: 2.1 Consensus size: 169
17008317 TAGATTGGGG
* * *
17008327 ATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCCCACCCAGCCAGAGAGG
1 ATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCCCACCCAGCCAGAGAGG
* * * * * * *
17008392 CATAATGCGCAAGTCGGGGATCAGCCTGGTCCCCTCTGCATGTAGCCAATCCCGTTGCTGGTCAT
66 CAGAATGCACAAGTCAGAGATCAGCCCGGTCCCCCCTGCATGTAGCCAATCCCGCTGCTGGTCAT
*
17008457 GCTGCCACAACCCTCGATCTGCCTAGGGCTTAGACATG-GA
131 GCTGCCACAACCCTCGATCTG-CTAGAGCTTAGAC-TGAGA
* * * * ** *
17008497 ATGAACCTCGTATGCCTAAGCCAAGCCATGAAACGAGCATGCGGGCGCTCAGCTGGCCGGAGAGG
1 ATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCCCACCCAGCCAGAGAGG
* *
17008562 CAGAATGCACAAGTCAGAGATC-GACCCGGTCCCCCCTGCATGCTA-CCGATCCTGCTGCTGGTC
66 CAGAATGCACAAGTCAGAGATCAG-CCCGGTCCCCCCTGCATG-TAGCCAATCCCGCTGCTGGTC
* * *
17008625 TTGCTGCCGCAACCCTC-AGTCTAG-TATGATCTTAGACTGAGA
129 ATGCTGCCACAACCCTCGA-TCT-GCTA-GAGCTTAGACTGAGA
*
17008667 ATAAACTTCGTATGC
1 ATGAACTTCGTATGC
17008682 TTAGACATGG
Statistics
Matches: 154, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
169 6 0.04
170 145 0.94
171 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (169 bp):
ATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCCCACCCAGCCAGAGAGG
CAGAATGCACAAGTCAGAGATCAGCCCGGTCCCCCCTGCATGTAGCCAATCCCGCTGCTGGTCAT
GCTGCCACAACCCTCGATCTGCTAGAGCTTAGACTGAGA
Found at i:17008686 original size:26 final size:25
Alignment explanation
Indices: 17008655--17008706 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
17008645 CTAGTATGAT
17008655 CTTAGAC-TGAGAATAAACTTCGTATG
1 CTTAGACATG-GAATAAAC-TCGTATG
*
17008681 CTTAGACATGGAATGAACTCGTATG
1 CTTAGACATGGAATAAACTCGTATG
17008706 C
1 C
17008707 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 8 0.33
26 14 0.58
27 2 0.08
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACATGGAATAAACTCGTATG
Found at i:17008884 original size:354 final size:350
Alignment explanation
Indices: 17007973--17008972 Score: 970
Period size: 354 Copynumber: 2.8 Consensus size: 350
17007963 TCGGTCTGAT
* * **
17007973 CTTAGACTGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAATAAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * * * * * * * * * * *
17008038 TGATCGAAGAGCCATAATGCGCAAGCCGGGGATCGGCTCAATCCCCCTCTACGTGCTACCGGTTC
66 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCTTCTGCATGTTGCAGGTCC
* *
17008103 CACTGCCACAACCCTCGGTCTGGCTAGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * *
17008168 CCCACGAAA-TAGGTGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAATGAGCAAGCCGGGGACCG
196 CCCATGAAACGA-GCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGA-CAAGTCGGGGATCG
* * * * * * *
17008232 GCCC-AT-TCCCC-C--CTA-CG-TGCTG-T-CGATCCTACTACCGTAACCCTTGATCTGGTTTG
259 ACCCGATCCCCCCTCTGCTACCGATCCTGCTGCGATCCTACTACCGCAACCCTAGATCTAGTATG
* *
17008288 ATCCTAGATTTGGAATGAACTCATATG
324 ATCCTAGATCTGGAATAAACTCATATG
* * * * ** *
17008315 CTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCCCACC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * * *
17008380 CAGCCAGAGAGGCATAATGCGCAAGTCGGGGATCAGCCTGGTCCCCTCTGCATGTAGCCAATCCC
66 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCT-T-C---T-G-C-AT---
* ** * * *
17008445 GTTGCTGGTCATGCTGCCACAACCCTCGATCTGCCTAGGGCTTAGACATGGAATGAAC-CTCGTA
120 GTTGCAGGTCCCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTC-CCTA
* * *
17008509 TGCCTAAGCCAAGCCATGAAACGAGCATGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCACAA
184 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATG-ACAA
* * * * * * *
17008574 GTCAGAGATCGACCCGGTCCCCCCTGCATGCTACCGATCCTGCTGCTGGTCTTGCTGCCGCAACC
248 GTCGGGGATCGACCCGATCCCCCCT-C-TGCTACCGATCCTGCTGC-GATCCTACTACCGCAACC
* *
17008639 CTCAG-TCTAGTATGATCTTAGA-CTGAGAATAAACTTCGTATG
310 CT-AGATCTAGTATGATCCTAGATCTG-GAATAAAC-TCATATG
* *
17008681 CTTAGACAT-GGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGGGCTGAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
17008744 CCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCTTCTGCATGTTGCAGGTC
65 CCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCTTCTGCATGTTGCAGGTC
*
17008809 CCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
17008874 ACCCATGAAACGGGCGTGCGGGCGCTCAACCGGCCAGAGAGGCAAAAT-ATGTAAGTCGGGGATC
195 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGA--CAAGTCGGGGATC
*
17008938 GACCCGATCCCCCCTACGTGCTGCCGATCCTGCTG
258 GACCCGATCCCCCCT-C-TGCTACCGATCCTGCTG
17008973 TTGCAACCCT
Statistics
Matches: 524, Mismatches: 101, Indels: 54
0.77 0.15 0.08
Matches are distributed among these distances:
342 87 0.17
343 1 0.00
344 1 0.00
347 1 0.00
349 1 0.00
350 1 0.00
352 2 0.00
353 114 0.22
354 151 0.29
355 5 0.01
357 3 0.01
358 1 0.00
359 1 0.00
360 4 0.01
361 2 0.00
362 4 0.01
363 2 0.00
364 4 0.01
365 117 0.22
366 21 0.04
367 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (350 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCTTCTGCATGTTGCAGGTCC
CGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGACAAGTCGGGGATCGAC
CCGATCCCCCCTCTGCTACCGATCCTGCTGCGATCCTACTACCGCAACCCTAGATCTAGTATGAT
CCTAGATCTGGAATAAACTCATATG
Found at i:17010388 original size:26 final size:26
Alignment explanation
Indices: 17010350--17010402 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17010340 GGCTCAAAAT
*
17010350 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17010376 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17010402 C
1 C
17010403 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17010880 original size:26 final size:26
Alignment explanation
Indices: 17010851--17010903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17010841 CTGGTCCAAT
*
17010851 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17010877 CTTAGACTGGGGATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17010903 C
1 C
17010904 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17011240 original size:26 final size:26
Alignment explanation
Indices: 17011211--17011263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17011201 CTGGTCCGAT
*
17011211 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGA-TGTGGAATGAACTCCGTATG
17011237 CTTAGATGTGGAATGAACTCCGTATG
1 CTTAGATGTGGAATGAACTCCGTATG
17011263 C
1 C
17011264 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATGTGGAATGAACTCCGTATG
Found at i:17011974 original size:501 final size:499
Alignment explanation
Indices: 17011002--17012328 Score: 1435
Period size: 501 Copynumber: 2.6 Consensus size: 499
17010992 CTACCGATCC
** *
17011002 TGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAAC-TCCAT
1 TGCTGCCGGTCCCACTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCC-T
* * * * * * *
17011066 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCTGCCTGATAGGCAGAATGCATA
65 ATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAAAATGCGTA
* * * * *
17011131 AGCCGGGGATCGGCTCGATCCCCCCTAGAGCTATCATCTTACTACTGGTCCTGTTACTGCAACCC
130 AGCCGGGGATCGGCCCGAT-CCCCCTAGTGCTA-C--C--A--A----TCCTGCTGCCGCAACCC
* * * * * *
17011196 TTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-TGTGGAATGAACTCCGT
183 TCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GGGATGAACTCCGT
* * * ** * * * *
17011260 ATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGTTGACCGGATAGGCAGAATGCACA
247 ATGCCTAAGTCAACTCACAAAACGAGCGTGCGGGCACTCAGTCAACCAGAGAGGCAGGATGCGCA
* * * * * * * *
17011325 AGTCGGGGACCGGCCTGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCAGT
312 AGCCGGGGACCGACCTAGTCCACCTTGCGTGCTATCAATCCTACTACCGCAACCCTCAGTCCAGT
* * * **
17011390 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAACAGGTGTGTGGGCAC
377 CCAATCTTAGACTAGGAATGAACTCCGTATGCATAACTCAACCCACAAAACAGGCGTGCAGGCAC
* * *
17011455 TGAACCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCG
442 TGAACCGACCGAAGAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTCTGCG
* * *
17011513 TGCTGTCGGTCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGAAATGAACTTCCTA
1 TGCTGCCGGTCCCACTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCCTA
* *
17011578 TGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTTAGCCGGCCGGAGAGGCAAAATGCGTAA
66 TGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAAAATGCGTAA
* * * * **
17011643 GCCGGGGATCAGCCCGGTCCGCTCTGCGTGCTACCAATCCTGCTGCCGCAACCCTCAATCCGATT
131 GCCGGGGATCGGCCCGATCC-CCCT-AGTGCTACCAATCCTGCTGCCGCAACCCTCGGTCCGATT
* * *
17011708 CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTTTGCCTAAGTCA
194 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* ** * *
17011773 ACTGATGAAACAAGCGTGCGGGCACTCAGTCAACCAGAGAGGCAGGATGCGCAAGCCGGGGATCG
259 ACTCACAAAACGAGCGTGCGGGCACTCAGTCAACCAGAGAGGCAGGATGCGCAAGCCGGGGACCG
* *
17011838 ACCTAGTCCACCTTGCGTGCTATCAATCCTACTACCGCAACCCTCAGT-CTGATCCGATCTTAGA
324 ACCTAGTCCACCTTGCGTGCTATCAATCCTACTACCGCAACCCTCAGTCCAG-TCCAATCTTAGA
* * * * *** ** *
17011902 CTAGGAATGAACTTCGTATGCATAAGTTAACCCACGAAAC-GAGCGTGCAGGTGTTGAGTCGGCC
388 CTAGGAATGAACTCCGTATGCATAACTCAACCCACAAAACAG-GCGTGCAGGCACTGAACCGACC
* * *
17011966 GAAGAGGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGTG
452 GAAGAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTCTGCG
* *** * * * *
17012014 TGCTGCCGGTGCTGTTACCACAACCCTTGGTCTGACTGGGGCTTAGACATGGATTGAACTCCCTA
1 TGCTGCCGGTCCCACTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCCTA
* ** ** * *
17012079 TGCTTAAGCCAACCCACAAAATAGGCATGCGGTCGCTCAGCCGACCAGAGAGG-AAGAATGCGTA
66 TGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAA-AATGCGTA
* * * * * * * *
17012143 AGCCAGAGATTGGCCCAATCCCCCTTATGTGCTATCGATCCAGCTGCCGGAACCCTCGGTCCGA-
130 AGCCGGGGATCGGCCCGATCCCCC-TA-GTGCTACCAATCCTGCTGCCGCAACCCTCGGTCCGAT
*
17012207 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
193 TC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
** *
17012272 CAACTCACAAAACGAGCGTGCGGGTGCTCAG-CTAACCAGAGAGGTAGGATGCGCAAG
257 CAACTCACAAAACGAGCGTGCGGGCACTCAGTC-AACCAGAGAGGCAGGATGCGCAAG
17012329 TTGGGAATCG
Statistics
Matches: 681, Mismatches: 124, Indels: 32
0.81 0.15 0.04
Matches are distributed among these distances:
500 10 0.01
501 525 0.77
502 2 0.00
505 1 0.00
507 1 0.00
509 1 0.00
510 2 0.00
511 131 0.19
512 8 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (499 bp):
TGCTGCCGGTCCCACTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCCTA
TGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAAAATGCGTAA
GCCGGGGATCGGCCCGATCCCCCTAGTGCTACCAATCCTGCTGCCGCAACCCTCGGTCCGATTCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
TCACAAAACGAGCGTGCGGGCACTCAGTCAACCAGAGAGGCAGGATGCGCAAGCCGGGGACCGAC
CTAGTCCACCTTGCGTGCTATCAATCCTACTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTA
GGAATGAACTCCGTATGCATAACTCAACCCACAAAACAGGCGTGCAGGCACTGAACCGACCGAAG
AGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTCTGCG
Found at i:17012249 original size:26 final size:26
Alignment explanation
Indices: 17012213--17012265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17012203 CCGATCTGAT
17012213 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17012239 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17012265 C
1 C
17012266 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17012962 original size:26 final size:25
Alignment explanation
Indices: 17012923--17012974 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17012913 GGCTCAAAAT
17012923 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
17012948 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
17012974 C
1 C
17012975 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:17013141 original size:26 final size:26
Alignment explanation
Indices: 17013105--17013157 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17013095 CCAGTCCGAT
* * *
17013105 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAACGAACTCCGTATG
*
17013131 CTTAGAATGGGGACGAACTCCGTATG
1 CTTAGAATGGGAACGAACTCCGTATG
17013157 C
1 C
17013158 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAACGAACTCCGTATG
Done.