Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 145 of 402
Found at i:17013443 original size:170 final size:167
Alignment explanation
Indices: 17013145--17013921 Score: 591
Period size: 159 Copynumber: 4.7 Consensus size: 167
17013135 GAATGGGGAC
* * * *
17013145 GAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGATCAGTCGGTCGGAGAGGCA
1 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCA
* * * * * ** ** * *
17013210 TAATGCGTAACCCG-GGATCAACCCGATCCCCCTCTGAATTTTATCGATCCCGCTGGCGGTCCTG
66 GAATGCGCAAGCCGAGGATCGACCCGGTCCCCCT-TGCGTGCTGTCGATCCTGCT--CGGTCCTG
* * *
17013274 CTACCACAACCTTCGGTTCGGCTGGGGCTTAGAC-ATGGAAT
128 CTACCACAACCTTCGATCCGGCT-GAGCTTAGACTA-GGAAT
* * * * * *
17013315 GAACTCCGTATTCCTTAGCCAACCCACGACACAAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCA
1 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCA
17013380 GAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTACTGGTCCTGC
66 GAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTGCT-C-GGTCCTGC
* ** * * * *
17013445 TATCGTAACCTTCAATCCGATCTGATCTTAGACTGGGAAT
129 TACCACAACCTTCGATCCG-GCTGAGCTTAGACTAGGAAT
* * * *
17013485 GAACTCCGTATGCCTTAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGTTCGGAGAGGCA
1 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCA
* * * * *
17013550 GAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCCAT-C--CT--G--CTG-T
66 GAATGCGCAAGCCGAGGATCGACCCGGT-CCCCCTTGCGTGCTGTCGATCCTGCTCGGTCCTGCT
* ** *
17013607 --CACAACCCTC-ACTCCGGTCCAATCTTAGACTAGGAAT
130 ACCACAACCTTCGA-TCCGG-CTGAGCTTAGACTAGGAAT
* * * * * * * ***
17013644 GAACTCCGTATACCTAAGTCAACCCACGAAATGACCATGCGGGCACTGAGCCACCCGGAGAGGCA
1 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCA
* * * *
17013709 TAATGCGCAAGCC-AGAGATCGACCCGGTCCGCCTT---TGC-GT-G---CT-ATCGGTCCCGCT
66 GAATGCGCAAGCCGAG-GATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTCGGTCCTGCT
* *
17013764 ACCACAACCCTCGATCCGGCTGGGGCTTAGAC-ATGGAAT
130 ACCACAACCTTCGATCCGGCT-GAGCTTAGACTA-GGAAT
* * * *
17013803 GAACTCCCTATGCCTAAGCCAACCCACGAAATG-G-GTGAGTGCATGCTCAGCCGGTCGGAGAGG
1 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC--GCTCAGCCGGTCGGAGAGG
* * * * *
17013866 CAGAATGCGCAAGCTGGGGATC-AGCTCGGTCCCTCTTTCGTGCTGTCGATCCTGCT
64 CAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCCCTTGCGTGCTGTCGATCCTGCT
17013922 ACCGTAGCCC
Statistics
Matches: 478, Mismatches: 97, Indels: 66
0.75 0.15 0.10
Matches are distributed among these distances:
151 1 0.00
152 1 0.00
154 3 0.01
155 3 0.01
156 2 0.00
157 6 0.01
158 10 0.02
159 199 0.42
160 2 0.00
161 1 0.00
162 6 0.01
163 2 0.00
164 2 0.00
167 2 0.00
168 3 0.01
169 1 0.00
170 197 0.41
171 37 0.08
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.20
Consensus pattern (167 bp):
GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCA
GAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTCGGTCCTGCTA
CCACAACCTTCGATCCGGCTGAGCTTAGACTAGGAAT
Found at i:17013983 original size:26 final size:26
Alignment explanation
Indices: 17013947--17013999 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17013937 CTAGTCTGAT
17013947 CTTAGACTGGGAATGAACTT-CGTATG
1 CTTAGACTGGGAATGAA-TTCCGTATG
*
17013973 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAATTCCGTATG
17013999 C
1 C
17014000 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCCGTATG
Found at i:17014609 original size:184 final size:184
Alignment explanation
Indices: 17014289--17014658 Score: 429
Period size: 184 Copynumber: 2.0 Consensus size: 184
17014279 TCCGGCTGGG
* *
17014289 GCTTAGGCATGGAATGAACAACCTATGCCTAAGCCAACCCACGAAATGGACGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACAACCTATGCCTAAGCCAACCCACGAAATAGACGTGCAGGCGCTCAG
* * * ** *
17014354 CCGATCGAAGAGGCAGAATACGCAAGCTAGGGATCGACCCGATCCCTTCTGCGTGCTACCGATCC
66 CCGACCGAAGAGGCAGAATACGCAAGCCAGGGACCGACCCGATCCCCCCTGCATGCTACCGATCC
* * * *
17014419 TGCTACCGCAATCGTCGATCCAGTCCGATCTTAGACTGGGAATGAAATTTGTAT
131 TGCTACCGCAACCCTCGATCCAGTACGATCTTAGACTGGGAATGAAATCTGTAT
* * * * * *
17014473 GCTTAGACATGGAATGAAC-TCCGTATGTCTAAGGCAACCCACGAAACTAG-TGTGCGGGTGCTC
1 GCTTAGACATGGAATGAACAACC-TATGCCTAAGCCAACCCACGAAA-TAGACGTGCAGGCGCTC
* * * * * * *
17014536 AGCTGGCCGGAGAGGTAGAATACGCAAGCCGGGGACCGATCCGATCCCCCCTGCATGCTATCGAT
64 AGCCGACCGAAGAGGCAGAATACGCAAGCCAGGGACCGACCCGATCCCCCCTGCATGCTACCGAT
* * ** * *
17014601 CTTGCTACCGCAACCCTCGGTCTGGTATGATCTTAGACTGGGAATGAACTCTGTAT
129 CCTGCTACCGCAACCCTCGATCCAGTACGATCTTAGACTGGGAATGAAATCTGTAT
17014657 GC
1 GC
17014659 CTAGGTCAAC
Statistics
Matches: 153, Mismatches: 31, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
183 2 0.01
184 149 0.97
185 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACAACCTATGCCTAAGCCAACCCACGAAATAGACGTGCAGGCGCTCAG
CCGACCGAAGAGGCAGAATACGCAAGCCAGGGACCGACCCGATCCCCCCTGCATGCTACCGATCC
TGCTACCGCAACCCTCGATCCAGTACGATCTTAGACTGGGAATGAAATCTGTAT
Found at i:17014975 original size:158 final size:158
Alignment explanation
Indices: 17014474--17014967 Score: 496
Period size: 158 Copynumber: 3.1 Consensus size: 158
17014464 AATTTGTATG
* * * * ** *
17014474 CTTAGACATGGAATGAACTCCGTATGTCTAAGGCAACCCACGAAACTAGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCAGC
* * * * * * * *
17014539 TGGCCGGAGAGGTAGAATACGCAAGCCGGGGA-CCGATCCGATCCCCCCTGCATGCTATCGATCT
66 CGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCT-CGATCCCCCTTGCGTGCTATCGATCC
* ** * *
17014603 TGCTACCGCAACCCTCGGTCTGGTATGAT
130 TGCTGCCATAACCCTCGGTCCGGTCTGAT
* * * * * * *
17014632 CTTAGAC-TGGGAATGAACTCTGTATGCCTAGGTCAACCCATGAAACGAGCCTACAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCAG
* * * * * *
17014696 CCAGCCGTAGA-GAAGTAATGCGCAAGCC-AGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGA
65 CCGGCCGGAGAGGTAG-AATGCGCAAGCCGA-GGATCGGCTCGATCCCCCT-TGCGTGCTATCGA
* *
17014759 TCCCGCTGCCATAACCCTCGGTCCGG-CTGAGG
127 TCCTGCTGCCATAACCCTCGGTCCGGTCTGA-T
* *
17014791 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCAGC
* ** * *
17014856 CGGTCGGAGAGGTAGAATGCATAAGCCGAGGATCGGCTCGATCCCCCTTACGTGCTACCGATCCT
66 CGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCTTGCGTGCTATCGATCCT
*
17014921 GCTGCCATAACCCTCGGTCCGGTCCGAT
131 GCTGCCATAACCCTCGGTCCGGTCTGAT
17014949 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
17014968 TTGTATGCTT
Statistics
Matches: 269, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 135 0.50
159 124 0.46
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCAGC
CGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCTTGCGTGCTATCGATCCT
GCTGCCATAACCCTCGGTCCGGTCTGAT
Found at i:17014985 original size:26 final size:26
Alignment explanation
Indices: 17014949--17015001 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17014939 CCGGTCCGAT
* *
17014949 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
17014975 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
17015001 C
1 C
17015002 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:17015041 original size:501 final size:498
Alignment explanation
Indices: 17013277--17015038 Score: 1739
Period size: 501 Copynumber: 3.5 Consensus size: 498
17013267 GGTCCTGCTA
* * * * *
17013277 CCACAACCTTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATTCCTTAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * *
17013342 GACACAAGCG-TACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCG
66 GA-A-ATGGGCTACGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCG
* * ** * * * **
17013406 GTCCCCCTTGCGTGCTGTCGATCCTG----C-T-A--CT-GGTCC--TGCTATCGTA-ACCT-TC
129 ATCCCCCTTACGTGCTACCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGA-CTGGG
* * *
17013458 AATCCG-A-TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTTAGCCAACCCACGAAACGA
193 AAT--GAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * ** *
17013519 GCGTGCGGGTGCTCAGTCGTTCGGAGAGGCAGAATGA-GCAAGCCGGGGATCGGCCCGGTCCCCC
256 GCATGCGGGCGCTCAGTCGGCCGGAGAGGCAGAAT-ACGCAAGCCGGGGAAC-GCCCGGT-CCCC
* **
17013583 CCTGCGTGCTGTCCATCCTGCTGTCACAACCCTCACTCCGGTCCAATCTTAGACTAGGAATGAAC
318 CCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAAC
* * * * * * *
17013648 TCCGTATACCTAAGTCAACCCACGAAATGA-CCATGCGGGCACTGAGCCACCCGGAGAGGCATAA
383 T-CGTATGCCTAAGTCAACCCATGAAACGAGCC-TACGGGCGCTGAGCCAGCCGAAGAGGCATAA
* * * * * * *
17013712 TGCGCAAGCCAGAGATCGACCCGGTCCGCCTTTGCGTGCTATCGGTCCCGCTA
446 TGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTG
*
17013765 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *
17013830 GAAATGGG-TGA-GTGCATGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCTC
66 GAAATGGGCT-ACG-G-GTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTC
* * * ** * * *
17013893 GGTCCCTCTTTCGTGCTGTCGATCCTGCTACCGTAGCCCTCGGTCTAGTCTGATCTTAGACTGGG
128 GATCCCCCTTACGTGCTACCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGG
* * * * *
17013958 AATGAACTTCGTATGCTTAGACTGGGGATGAATTCCGTATGCCAAAGTCAACCCAAGAAACGAGC
193 AATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * ** *
17014023 ATGCGGGCGCTCAGTCAGCCTGAGAGACAGTATGCGCAAGCCGAGGAATGGCTTGGTCACCCCTG
258 ATGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATACGCAAGCCGGGGAA-CGCCCGGTCCCCCCTG
*
17014088 CGTGCTGTCGATCCTACTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACATCG
322 CGTGCTGTCGATCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAAC-TCG
* * *
17014153 TATGCCTAAGTCAACCCATG-AACTGAGCGTACGGGCGCTGAGCC-GATCGAAAAGGCATAATGC
386 TATGCCTAAGTCAACCCATGAAAC-GAGCCTACGGGCGCTGAGCCAG-CCGAAGAGGCATAATGC
* * * * * * * * ** *
17014216 GTAAGCCGGGGATCAGCCCAGTCCCCGTCTGTGTGTTG-CCAGTCTTGTTG
449 GCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGA-TCCCGCTG
* * **
17014266 CCACAACTCTCGGTCCGGCTGGGGCTTAGGCATGGAATGAACAACCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * * * *
17014331 GAAATGGACGTGCAGGCGCTCAGCCGATCGAAGAGGCAGAATACGCAAG-CTAGGGATCGACCCG
66 GAAATGGGC-TACGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCTCG
* * * * * *
17014395 AT-CCCTTCTGCGTGCTACCGATCCTGCTACCGCAATCGTCGATCCAGTCCGATCTTAGACTGGG
129 ATCCCCCT-TACGTGCTACCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGG
* * * *
17014459 AATGAAATTTGTATGCTTAGACAT-GGAATGAACTCCGTATGTCTAAGGCAACCCACGAAACTAG
193 AATGAACTTTGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
** * * * * *
17014523 TGTGCGGGTGCTCAG-CTGGCCGGAGAGGTAGAATACGCAAGCCGGGGACCGATCCGATCCCCCC
257 CATGCGGGCGCTCAGTC-GGCCGGAGAGGCAGAATACGCAAGCCGGGGAACG-CCCGGTCCCCCC
* * * ** * * *** *
17014587 TGCATGCTATCGATCTTGCTACCGCAACCCTCGGTCTGGTATGATCTTAGACTGGGAATGAACTC
320 TGCGTGCTGTCGATCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTC
* * * *
17014652 TGTATGCCTAGGTCAACCCATGAAACGAGCCTACAGGCGCTGAGCCAGCCGTAGA-GAAGTAATG
385 -GTATGCCTAAGTCAACCCATGAAACGAGCCTACGGGCGCTGAGCCAGCCGAAGAGGCA-TAATG
17014716 CGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTG
448 CGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTG
* * *
17014767 CCATAACCCTCGGTCCGGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * **
17014832 GAAACGGGCATACGGGTGCTCAGCCGGTCGGAGAGGTAGAATGCATAAGCCGAGGATCGGCTCGA
66 GAAATGGGC-TACGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGA
* * *
17014897 TCCCCCTTACGTGCTACCGATCCTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
130 TCCCCCTTACGTGCTACCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAA
* * * *
17014962 TGAACTTTGTATGCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCATGAAACGAACAT
195 TGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
17015027 GCGGGCGCTCAG
260 GCGGGCGCTCAG
17015039 CTGACCAGAG
Statistics
Matches: 1020, Mismatches: 211, Indels: 73
0.78 0.16 0.06
Matches are distributed among these distances:
486 5 0.00
487 3 0.00
488 126 0.12
492 1 0.00
493 1 0.00
496 2 0.00
497 4 0.00
498 1 0.00
499 9 0.01
500 19 0.02
501 747 0.73
502 101 0.10
503 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (498 bp):
CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAATGGGCTACGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGAT
CCCCCTTACGTGCTACCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAT
GAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATG
CGGGCGCTCAGTCGGCCGGAGAGGCAGAATACGCAAGCCGGGGAACGCCCGGTCCCCCCTGCGTG
CTGTCGATCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCGTATGC
CTAAGTCAACCCATGAAACGAGCCTACGGGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCC
AGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTG
Found at i:17016069 original size:157 final size:158
Alignment explanation
Indices: 17015626--17017098 Score: 1093
Period size: 157 Copynumber: 9.2 Consensus size: 158
17015616 ACTCCATATG
* * * * * *
17015626 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCTAAGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
17015691 CGAC-CAGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGATCCCCCTTGCGTGTTGTCGATCC
66 CGGCTGA-AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
17015755 TGCTACTGCAACCCTCGGTCCAGTCTGAT
130 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * *
17015784 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
17015848 CCAGCTGGAGAGGCAGAATGCGCAAGTCGGGGATC-AGCCTGGTCCTCCATGTGTACTG-CTGAT
65 CCGGCTGAAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGGTCCCCCCTGCGTGCTGTC-GAT
* *
17015911 CCTGCTGCCGCAACCCTTGGTCCGATCTGAT
128 CCTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * *
17015942 CTTAGACTGGGAATGAACT-CGTATGCCTAGGTCAACCCACGAAACTAGCGTGCGGTCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
17016006 CAACTGAAGAGGCATAATGCACAAGCCAGGGACCGATCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGGCTGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * *
17016071 GCTACCGCAACCCTCGATCCGGTCCGAT
131 GCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * * * * *
17016099 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAATGAGTGTGTGAGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
17016164 CGG-TCAGAGAGGCATAATACGCAAGCC-GAGGATC-AGCTTGGTCCCCCTCTACGTGCTGTCAA
66 CGGCTGA-AGAGGCAGAATGCGCAAGCCAG-GGATCGA-CCCGGTCCCCC-CTGCGTGCTG----
* * * **
17016226 TCCCGTTGTCAGTCCTGCTGCCACAACCTTCAGTCCGGT-TGCGG
123 T--C---G--A-TCCTGCTGCCGCAACCCTCGGTCCGGTCTG-AT
* * *
17016270 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
17016334 CCGGGCAG-AGAGGCAGAATACGCAAGCCAGGGATCGGCCCAAT-CCCCCTGCGTGTTGTCGATC
65 CC-GGCTGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
** *
17016397 CTATTGCCGCAACCCTCGATCCGGTCTGAT
129 CTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * *
17016427 CTTAGACTGGGAATGAACTCCGTACGCCTAAG-CGAACCTACGAAACGGGCATGCGGGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
17016491 CCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTG-CTGATC
65 CCGGCTGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTC-GATC
** * *
17016555 CTG-TGTAGCAACCTTCGGTCCGGTCCGAT
129 CTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * *
17016584 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAAGGAGCGTGCGAGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17016649 CGG-TCGGAGAGGCATAATGCGCAAGCCAAGGATC-AGCCTGGTCCCCCTCTGAGTGCTACCGAT
66 CGGCT-GAAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGGTCCCCC-CTGCGTGCT---G-T
* * **
17016712 CCCGCTACCGGTCCTGCTGCCACAACCTTCGGTCCGG-CTGGGG
124 --CG--A----TCCTGCTGCCGCAACCCTCGGTCCGGTCT-GAT
* * *
17016755 CTTAGACAT-GGAATAAACTCCGTAT-CCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17016818 TCGGGT-AGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTGCGTGCTATCGAT
65 CCGGCTGA-AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGT-CCCCCCTGCGTGCTGTCGAT
* *
17016882 CCTACTACCGCAACCCTCGGTCCGGTCTGAT
128 CCTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * * *
17016913 CTTAGACTGGGAATGAACTCCATATGCATAAGTTAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** * ** * *
17016978 CAG-TCAAAGAGGCATAATGCGCAAGTCGGGGATCGGCTTGATCCCCCTCTGCGTGCTAACGGTT
66 CGGCT-GAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATC
* * * **
17017042 C-GACTGTCGCAACCTTCGATCCGGTCCAAT
129 CTG-CTGCCGCAACCCTCGGTCCGGTCTGAT
*
17017072 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
17017099 TTAGACTGGA
Statistics
Matches: 1040, Mismatches: 208, Indels: 133
0.75 0.15 0.10
Matches are distributed among these distances:
156 6 0.01
157 352 0.34
158 290 0.28
159 134 0.13
160 2 0.00
161 1 0.00
162 1 0.00
163 2 0.00
164 3 0.00
165 3 0.00
166 2 0.00
168 1 0.00
169 8 0.01
170 83 0.08
171 147 0.14
172 5 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCTGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCGGTCTGAT
Found at i:17016535 original size:486 final size:484
Alignment explanation
Indices: 17015784--17017098 Score: 1613
Period size: 486 Copynumber: 2.7 Consensus size: 484
17015774 CCAGTCTGAT
* * * * *
17015784 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
17015848 CC-AGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCTCCATGTGTACTG-CTGAT
65 CCGGGC-AGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCC-CCCTGCGTGCTGTC-GAT
* * * *
17015911 CCTGCTGCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACT-CGTATGCCTAGGTC
127 CCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-C
* * * * * * *
17015975 AACCCACGAAACTAGCGTGCGGTCGCTCAACCAACTGAAGAGGCATAATGCACAAGCCAGGGACC
191 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATC
** *
17016040 GATCCGGTCCCCCCTGCGTGCTGTCGATCCTG-CTACCGCAACCCTCGATCCGGTCCGATCTTAG
256 GGCCCGGTCCCCCCTGCGTGCTG-CGATCCTGACTA-CGCAACCTTCGATCCGGTCCGATCTTAG
* * *
17016104 ACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAATGAGTGTGTGAGCACTGAGCCGGTC
319 ACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAAGGAGCGTGCGAGCACTGAGCCGGTC
* * ** *
17016169 AGAGAGGCATAATACGCAAGCCGAGGATCAGCTTGGTCCCCCTCT-ACGTGCTGTCAATCCCGTT
384 AGAGAGGCATAATACGCAAGCCAAGGATCAGCCTGGTCCCCCTCTGA-GTGCTACCAATCCCGCT
** *
17016233 GTCAGTCCTGCTGCCACAACCTTCAGTCCGGTTGCGG
448 ACCAGTCCTGCTGCCACAACCTTCAGTCCGGCTGCGG
*
17016270 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17016335 CGGGCAGAGAGGCAGAATACGCAAGCCAGGGATCGGCCCAATCCCCCTGCGTGTTGTCGATCCTA
66 CGGGCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTGCGTGCTGTCGATCCTA
* * *
17016400 TTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCGAACC
131 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC-AACC
* * * * * * * *
17016465 TACGAAACGGGCATGCGGGCGTTCAGCCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCC
195 CACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCGGCC
* ** *
17016530 CGGTCCCCCCTGTGTGCTGCTGATCCTGTGTA-GCAACCTTCGGTCCGGTCCGATCTTAGACTGG
260 CGGTCCCCCCTGCGTGCTGC-GATCCTGACTACGCAACCTTCGATCCGGTCCGATCTTAGACTGG
* *
17016594 GAATGAACTCCGTATGCCTAAGTCAACACATGAAAGGAGCGTGCGAGCGCTGAGCCGGTCGGAGA
324 GAATGAACTCCGTATGCCTAAGTCAACACATGAAAGGAGCGTGCGAGCACTGAGCCGGTCAGAGA
* * *
17016659 GGCATAATGCGCAAGCCAAGGATCAGCCTGGTCCCCCTCTGAGTGCTACCGATCCCGCTACCGGT
389 GGCATAATACGCAAGCCAAGGATCAGCCTGGTCCCCCTCTGAGTGCTACCAATCCCGCTACCAGT
* *
17016724 CCTGCTGCCACAACCTTCGGTCCGGCTGGGG
454 CCTGCTGCCACAACCTTCAGTCCGGCTGCGG
* *
17016755 CTTAGACATGGAATAAACTCCGTAT-CCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAGC
* *
17016819 CGGGTAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTGCGTGCTATCGATCC
66 CGGGCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGAT--CCCCCTGCGTGCTGTCGATCC
* * * *
17016884 TACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTTAA
129 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAA
* * * * * * *
17016949 CCCATGAAACGAGCGTGCGGGTGCTGAGCCAGTCAAAGAGGCATAATGCGCAAGTCGGGGATCGG
193 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCGG
** * * * * * *
17017014 CTTGATCCCCCTCTGCGTGCTAACGGTTC-GACTGTCGCAACCTTCGATCCGGTCCAATCTTAGA
258 CCCGGTCCCCC-CTGCGTGCT-GCGATCCTGACT-ACGCAACCTTCGATCCGGTCCGATCTTAGA
*
17017078 CTGGGAATGAACTCTGTATGC
320 CTGGGAATGAACTCCGTATGC
17017099 TTAGACTGGA
Statistics
Matches: 706, Mismatches: 108, Indels: 28
0.84 0.13 0.03
Matches are distributed among these distances:
484 76 0.11
485 253 0.36
486 314 0.44
487 16 0.02
488 47 0.07
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (484 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAGC
CGGGCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTGCGTGCTGTCGATCCTA
CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCC
GGTCCCCCCTGCGTGCTGCGATCCTGACTACGCAACCTTCGATCCGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACACATGAAAGGAGCGTGCGAGCACTGAGCCGGTCAGAGAGG
CATAATACGCAAGCCAAGGATCAGCCTGGTCCCCCTCTGAGTGCTACCAATCCCGCTACCAGTCC
TGCTGCCACAACCTTCAGTCCGGCTGCGG
Found at i:17016907 original size:643 final size:636
Alignment explanation
Indices: 17015625--17017091 Score: 1496
Period size: 643 Copynumber: 2.3 Consensus size: 636
17015615 AACTCCATAT
* *
17015625 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCTAAGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAA-AAACGAGCGTGCGGGTGCTCAG
* * *
17015690 TCGACCAGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGATCCCCCTTGCGTGTTGTCGATCC
65 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-TGCGTGTTGTCGATCC
* * * * * *
17015755 TGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAA
129 TACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCAAA
* * * * * *
17015820 CCCATGAAATGGGCGTGCGGGCGCTCAGCCAGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCAG
194 CCCACGAAACGGGCATGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAG
* * * *
17015885 CCTGGTCCTCCATGTGTACTGCTGATCCTGCTGCCGCAACCCTTGGTCCGATCTGATCTTAGACT
259 CCCGGTCCCCCATGTGTACTGCTGATCCTGCTGCAGCAACCCTTGGTCCGATCCGATCTTAGACT
* * *
17015950 GGGAATGAACTCGTATGCCTAGGTCAACCCACGAAACTAGCGTGCGGTCGCTCAACCAACTGAAG
324 GGGAATGAACTCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGTCGCTCAACCAACTGAAG
* * * *
17016015 AGGCATAATGCACAAGCCAGGGACCGATCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCA
389 AGGCATAATGCACAAGCCAAGGACCGAGCCGGTCCCCCCTGAGTGCTGTCGATCCTGCTACCACA
* * * * *
17016080 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAAT
454 ACCCTCGATCCGGTCCGAGCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACACACGAAAC
* * * * ** *
17016145 GAGTGTGTGAGCACTGAGCCGGTCAGAGAGGCATAATACGCAAGCCGAGGATCAGCTTGGTCCCC
519 GAGCGTGCGAGCACTCAGCCGGTCAGAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGATCCCC
* * * * *
17016210 CTCTACGTGCTGTCAATCCCGTTGTCAGTCCTGCTGCCACAACCTTCAGTCCGGT-TGCG
584 CCCTACGTGC-GT-AAT-CC--TG-CAGTCCTACTACCACAACCCTCAGTCCGGTCTG-A
* *
17016269 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTA-AAAACGAGCGTGCGGGTGCTCA
* * * * *
17016333 GCCGGGCAGAGAGGCAGAATACGCAAGCCAGGGATCGGCCCAATCCCCCTGCGTGTTGTCGATCC
64 GCCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCGTGTTGTCGATCC
* *
17016398 TATTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCGAA
129 TACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCAAA
* * * * *
17016463 CCTACGAAACGGGCATGCGGGCGTTCAGCCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGG
194 CCCACGAAACGGGCATGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAG
* * * *
17016528 CCCGGTCCCCCCTGTGTGCTGCTGATCCTG-TGTAGCAA-CCTTCGGTCCGGTCCGATCTTAGAC
259 CCCGGTCCCCCATGTGTACTGCTGATCCTGCTGCAGCAACCCTT-GGTCCGATCCGATCTTAGAC
* * * * **
17016591 TGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAAGGAGCGTGCGAG-CGCTGAGCC-GGTC
323 TGGGAATGAACT-CGTATGCCTAAGTCAACACACGAAACGAGCGTGCG-GTCGCTCAACCAACT-
* * *
17016654 GGAGAGGCATAATGCGCAAGCCAAGGATC-AGCCTGGTCCCCCTCTGAGTGCTACCGATCCCGCT
385 GAAGAGGCATAATGCACAAGCCAAGGACCGAGCC-GGTCCCCC-CTGAGTGCT---G-T--CG--
* * * * *
17016718 ACCGGTCCTGCTGCCACAACCTTCGGTCCGG-CTGGGGCTTAGACAT-GGAATAAACTCCGTAT-
440 A----TCCTGCTACCACAACCCTCGATCCGGTC-CGAGCTTAGAC-TGGGAATAAACTCCGTATG
* * * *
17016780 CCTAAGCCAAC-CTACGAAACGAGCGTGCGGGCGCTCAGTCGGGT-AGAGAGGCAGAATGCGCAA
499 CCTAAGCCAACAC-ACGAAACGAGCGTGCGAGCACTCAG-CCGGTCAGAGAGGCAGAATACGCAA
* * * *
17016843 GCC-AGGGATCGGCCCGATCCCCCCCTGCGTGC-T-AT-C-G-A-TCCTACTACCGCAACCCTCG
562 GCCGA-GGATCAGCCCGATCCCCCCCTACGTGCGTAATCCTGCAGTCCTACTACCACAACCCTCA
17016901 GTCCGGTCTGA
626 GTCCGGTCTGA
* * * * * * *
17016912 TCTTAGACTGGGAATGAACTCCATATGCATAAGTTAACCCATGAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTA-AAAACGAGCGTGCGGGTGCTCAG
* * * * ** * ** * *
17016977 CCAGTCAAAGAGGCATAATGCGCAAGTCGGGGATCGGCTTGATCCCCCTCTGCGTGCTAACGGTT
65 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGAT-CCCC-CTGCGTGTTGTCGATC
* * * **
17017042 CGACTGTCGCAACCTTCGATCCGGTCCAATCTTAGACTGGGAATGAACTC
128 CTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
17017092 TGTATGCTTA
Statistics
Matches: 678, Mismatches: 116, Indels: 57
0.80 0.14 0.07
Matches are distributed among these distances:
641 4 0.01
642 41 0.06
643 331 0.49
644 113 0.17
645 57 0.08
646 1 0.00
647 1 0.00
648 1 0.00
649 1 0.00
650 2 0.00
651 2 0.00
652 1 0.00
653 1 0.00
654 2 0.00
655 70 0.10
656 49 0.07
657 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (636 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAAAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCGTGTTGTCGATCCTA
CTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCAAACC
CACGAAACGGGCATGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCC
CGGTCCCCCATGTGTACTGCTGATCCTGCTGCAGCAACCCTTGGTCCGATCCGATCTTAGACTGG
GAATGAACTCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGTCGCTCAACCAACTGAAGAG
GCATAATGCACAAGCCAAGGACCGAGCCGGTCCCCCCTGAGTGCTGTCGATCCTGCTACCACAAC
CCTCGATCCGGTCCGAGCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACACACGAAACGA
GCGTGCGAGCACTCAGCCGGTCAGAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGATCCCCCC
CTACGTGCGTAATCCTGCAGTCCTACTACCACAACCCTCAGTCCGGTCTGA
Found at i:17017098 original size:159 final size:159
Alignment explanation
Indices: 17016795--17017091 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 159
17016785 GCCAACCTAC
** *
17016795 GAAACGAGCGTGCGGGCGCTCAGTCGGGTAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA
1 GAAACGAGCGTGCGGGCGCTCAGTCCAGTAAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA
* * * **
17016860 TCCCCCCCTGCGTGCTATCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
66 TCCCCCCCTGCGTGCTAACGATCCGACTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGA
17016925 ATGAACTCCATATGCATAAGTTAACCCAT
131 ATGAACTCCATATGCATAAGTTAACCCAT
* * * * * **
17016954 GAAACGAGCGTGCGGGTGCTGAG-CCAGTCAAAGAGGCATAATGCGCAAGTCGGGGATCGGCTTG
1 GAAACGAGCGTGCGGGCGCTCAGTCCAGT-AAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCG
* * * ** *
17017018 ATCCCCCTCTGCGTGCTAACGGTTCGACTGTCGCAACCTTCGATCCGGTCCAATCTTAGACTGGG
65 ATCCCCCCCTGCGTGCTAACGATCCGACTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGG
17017083 AATGAACTC
130 AATGAACTC
17017092 TGTATGCTTA
Statistics
Matches: 116, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
158 3 0.03
159 113 0.97
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GAAACGAGCGTGCGGGCGCTCAGTCCAGTAAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA
TCCCCCCCTGCGTGCTAACGATCCGACTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGA
ATGAACTCCATATGCATAAGTTAACCCAT
Found at i:17017113 original size:26 final size:26
Alignment explanation
Indices: 17017072--17017124 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17017062 CCGGTCCAAT
*
17017072 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17017098 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
17017124 C
1 C
17017125 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17017542 original size:26 final size:26
Alignment explanation
Indices: 17017491--17017543 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17017481 GGCTCAAAAT
*
17017491 CTTAGACTAGGAATGAACTATGTATG
1 CTTAGACTAGGAATGAACTATATATG
*
17017517 CTTAGAC-ATGGAATGAACTCTATATG
1 CTTAGACTA-GGAATGAACTATATATG
17017543 C
1 C
17017544 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTATATATG
Found at i:17017704 original size:26 final size:26
Alignment explanation
Indices: 17017675--17017727 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17017665 ACGGTCCGAT
17017675 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
17017701 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
17017727 C
1 C
17017728 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:17017798 original size:184 final size:184
Alignment explanation
Indices: 17017489--17017829 Score: 436
Period size: 184 Copynumber: 1.9 Consensus size: 184
17017479 GTGGCTCAAA
* *
17017489 ATCTTAGACTAGGAATGAACTATGTATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAACTACGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * *
17017554 CCATGAAATGAGCATACAGGCGCTCAACCAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GA
66 CCACGAAACGAGCATACAGGCACTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAG-
* *
17017618 CCCGATCCCCCT-TGCGTGCTGTCGATCCTACTGCCGCAACCTTCGGTACGGTCCG
130 CCCGA-CCCCCTCTACGTGCTGTCAATCCTACTGCCGCAACCTTCGGTACGGTCCG
* * * * *
17017673 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTAGGAATGAACTACGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
* * ** * * *
17017737 CCCACGAAACGAGCGTGCAGGCACTCAGTCGGCCAGAGAGGCATAATGCGTAAGCCGGGGATCAG
65 CCCACGAAACGAGCATACAGGCACTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAG
17017802 CCCGACCCCCTCTACGTGCTGTCAATCC
130 CCCGACCCCCTCTACGTGCTGTCAATCC
17017830 CGCTGCCGGT
Statistics
Matches: 132, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
183 7 0.05
184 124 0.94
185 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (184 bp):
ATCTTAGACTAGGAATGAACTACGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCACGAAACGAGCATACAGGCACTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGC
CCGACCCCCTCTACGTGCTGTCAATCCTACTGCCGCAACCTTCGGTACGGTCCG
Found at i:17018572 original size:148 final size:150
Alignment explanation
Indices: 17018107--17018593 Score: 574
Period size: 154 Copynumber: 3.2 Consensus size: 150
17018097 ACTTCGTATG
* *
17018107 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGTGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-ACTCAG
*
17018171 TCGGCTGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCTCGGTCCCCCCTGCGTGCTATCGATCC
64 T---C-GGAGAGGCAGAATGCGCAAGCCGGGATCAG-C-CGGT-CCCCCTGCGTGCTATCGATCC
* * **
17018236 TTCTGTCGCAACCCTCGGTCCGGTCCAAT
122 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * *
17018265 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-ACT---C
* * * * * *
17018330 CGACCGGAGAGGCATAATGCG-AAG-TGGGATCAGCCGGTCCCCTCTGCGTGCTACCGGTCCTGC
62 AG-TCGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCGGTCCCC-CTGCGTGCTATCGATCCTGC
* * **
17018393 TACCACAACCCTCGGTCCGG-CTGGGG
125 TGCCGCAACCCTCGGTCCGGTCT-GAT
17018419 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-CTCAGT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGACTCAGT
* *
17018482 CGGAGAGGCAGAATGCGCAAGCGGGGATC-GCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGCCG
65 CGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCGGTCCCCCTGCGTGCTATCGATCCTGCTGCCG
17018546 CAACCCTCGGTCCGGTCTGAT
130 CAACCCTCGGTCCGGTCTGAT
17018567 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
17018594 TTAGACATGG
Statistics
Matches: 283, Mismatches: 34, Indels: 34
0.81 0.10 0.10
Matches are distributed among these distances:
147 1 0.00
148 77 0.27
149 17 0.06
150 6 0.02
152 2 0.01
153 5 0.02
154 90 0.32
155 2 0.01
156 7 0.02
157 4 0.01
158 69 0.24
159 1 0.00
161 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (150 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGACTCAGTC
GGAGAGGCAGAATGCGCAAGCCGGGATCAGCCGGTCCCCCTGCGTGCTATCGATCCTGCTGCCGC
AACCCTCGGTCCGGTCTGAT
Found at i:17018596 original size:26 final size:26
Alignment explanation
Indices: 17018567--17018619 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17018557 CCGGTCTGAT
17018567 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17018593 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17018619 C
1 C
17018620 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17018935 original size:146 final size:150
Alignment explanation
Indices: 17018592--17018974 Score: 462
Period size: 151 Copynumber: 2.6 Consensus size: 150
17018582 AACTCCGTAT
*
17018592 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAC
* * *
17018657 CGCCGGAGAGGCAGAAT--GCAAGCCGGGATCGCCCGATCCCCCCTGTGTGCTGTCGATCCTGCT
66 CGTCGGAGAGGCAGAATGCGCAAG-CGGGATCG-CCGA-CCCCCCTCTGTGCTGCCGATCCTGCT
* *
17018720 GCGCAACCCTCGGTCCGGTCTGA
128 GCACAACCCTCGGTCCGCTCTGA
* *
17018743 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * *
17018807 GCCGTC-GAGAGGCATAATGCGCAAG-GGGATCG-CG-GCCCCCTCTGTGCTGCCGGTCC-GCTG
65 -CCGTCGGAGAGGCAGAATGCGCAAGCGGGATCGCCGACCCCCCTCTGTGCTGCCGATCCTGCTG
*
17018867 CCACAACCCTC-GTCCGCT-TGGG
129 -CACAACCCTCGGTCCGCTCT-GA
* * * * *
17018889 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCGCTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-GA
17018954 CCGGTCGGAGAGGCAGAATGC
65 CC-GTCGGAGAGGCAGAATGC
17018975 ATAAGCCGGG
Statistics
Matches: 202, Mismatches: 20, Indels: 23
0.82 0.08 0.09
Matches are distributed among these distances:
145 1 0.00
146 66 0.33
147 33 0.16
148 13 0.06
149 2 0.01
150 1 0.00
151 77 0.38
152 4 0.02
153 5 0.02
ACGTcount: A:0.22, C:0.32, G:0.30, T:0.17
Consensus pattern (150 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAC
CGTCGGAGAGGCAGAATGCGCAAGCGGGATCGCCGACCCCCCTCTGTGCTGCCGATCCTGCTGCA
CAACCCTCGGTCCGCTCTGA
Found at i:17019100 original size:26 final size:26
Alignment explanation
Indices: 17019048--17019100 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17019038 CCGGTCCGAT
* *
17019048 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
17019074 CTTAGACTAGGG-ATGAACTCCGCATG
1 CTTAGACT-GGGAATGAACTCCACATG
17019100 C
1 C
17019101 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:17019113 original size:481 final size:482
Alignment explanation
Indices: 17018054--17019158 Score: 1519
Period size: 481 Copynumber: 2.3 Consensus size: 482
17018044 CTGTTGCTGG
* *
17018054 TCCTACTGCCGCAACCCTTAGT-C--T--GATCTTAGATTGGGAATGAACTTCGTATGCTTAGAC
1 TCCTACTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* * * * *
17018114 ATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGTGGGCACTCAGTCGGCTGG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGCCGG
* *
17018179 AGAGGCAGAATGCGCAAGCCGGGATCGGCCTCGGTCCCCCCTGCGTGCTATCGATCCTTCTGTCG
130 AGAGGCAGAAT--GCAAGCCGGGATCGGCCTCGATCCCCCCTGCGTGCTATCGATCCTGCTGTCG
* *
17018244 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
193 CAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
17018309 ATGAGCGTGCGGGCACTGAGCCGACCGGAGAGGCATAATGCGAAGTGGGATCAGCCGGTCCCCTC
258 ACGAGCGTGCGGGCACTGAGCCGACCGGAGAGGCATAATGCGAAGTGGGATCAGCCGGCCCCCTC
17018374 TGCGTGCTACCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTC
323 T-CGTGCTACCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTC
* * *
17018439 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCAGTCGGAGAGGCAGAATGCGCAAGC
387 CCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCTCAGTCGGAGAGGCAGAATGCACAAGC
*
17018504 GGGGATCGCCGGTCCCCCTGCGTGCTGTCGA
452 GGGGATCGCCGGTCCCCCTGCGTGCTATCGA
* * * *
17018535 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTACTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
17018600 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-CCGCCGGA
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCGGA
* *
17018664 GAGGCAGAATGCAAGCCGGGATC-GCC-CGATCCCCCCTGTGTGCTGTCGATCCTGCTG-CGCAA
131 GAGGCAGAATGCAAGCCGGGATCGGCCTCGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAA
**
17018726 CCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
196 CCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* *
17018791 AGCGTGCGGGCGCTGAGCCG-TC-GAGAGGCATAATGCGCAAG-GGGATC-G-CGGCCCCCTCT-
261 AGCGTGCGGGCACTGAGCCGACCGGAGAGGCATAATGCG-AAGTGGGATCAGCCGGCCCCCTCTC
* *
17018850 GTGCTGCCGGTCC-GCTGCCACAACCCTC-GTCC-GCTTGGGGCTTAGACATGGAATGAACTCCC
325 GTGCTACCGGTCCTGCTACCACAACCCTCGGTCCGGC-TGGGGCTTAGACATGGAATGAACTCCC
* * * *
17018912 TATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCGCTCGACCGGTCGGAGAGGCAGAATGCAT
389 TATGCCTAAGCCAACCCACGAAACGAGCGTAC-GG-GCTC-A---GTCGGAGAGGCAGAATGCAC
*
17018977 AAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGA
448 AAG-CGGGGA-TCG-CCGGT-CCCCCTGCGTGCTATCGA
* * * *
17019016 TCCTACTGTCGTAACTCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGAC
1 TCCTACTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* * * * *
17019081 -TAGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCA
66 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCG
*
17019145 GAGAGGCAGGATGC
129 GAGAGGCAGAATGC
17019159 GCAAGCTAGG
Statistics
Matches: 557, Mismatches: 47, Indels: 38
0.87 0.07 0.06
Matches are distributed among these distances:
470 2 0.00
471 58 0.10
472 16 0.03
473 16 0.03
474 1 0.00
475 10 0.02
476 1 0.00
477 42 0.08
478 10 0.02
479 86 0.15
480 33 0.06
481 146 0.26
482 17 0.03
483 15 0.03
484 17 0.03
486 87 0.16
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (482 bp):
TCCTACTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCGGA
GAGGCAGAATGCAAGCCGGGATCGGCCTCGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAA
CCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCACTGAGCCGACCGGAGAGGCATAATGCGAAGTGGGATCAGCCGGCCCCCTCTCG
TGCTACCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCACGAAACGAGCGTACGGGCTCAGTCGGAGAGGCAGAATGCACAAGCGGGG
ATCGCCGGTCCCCCTGCGTGCTATCGA
Found at i:17025622 original size:11 final size:11
Alignment explanation
Indices: 17025606--17025633 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
17025596 CGGTTAGGCT
17025606 CTCCAGTGATG
1 CTCCAGTGATG
17025617 CTCCAGTGATG
1 CTCCAGTGATG
17025628 CTCCAG
1 CTCCAG
17025634 CGATAGTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.32, G:0.25, T:0.25
Consensus pattern (11 bp):
CTCCAGTGATG
Found at i:17026256 original size:25 final size:26
Alignment explanation
Indices: 17026209--17026260 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17026199 CTGGTCTGAT
17026209 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17026235 CTTAGACT-GGGATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17026260 C
1 C
17026261 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17026517 original size:185 final size:184
Alignment explanation
Indices: 17026050--17026597 Score: 471
Period size: 185 Copynumber: 3.0 Consensus size: 184
17026040 TCTGACTGGG
* * * * * * ** *
17026050 GCTTAGACATTGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACAGGCGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCACTCAG
* * * * * ** * * *
17026115 CCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACTCGAA-CCCCCAT-CCATGCTGCTGAT
65 TCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTC-AATCCCCCCTGACGTGCTGCTGAT
* * * * *
17026178 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
129 CCAGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGAATAGGAATGAACTCCATAT
* * * * *
17026234 GCTTAGACTGGGATTAACTCCGTATGCCTATGTCAACCCACAAAACAAGCGTGCAGGCGCTCAGT
1 GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCACTCAGT
* * *
17026299 CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCAATCCCCCCTGACGTGCTGTTGATCC
66 CGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTCAATCCCCCCTGACGTGCTGCTGATCC
* *
17026364 AGCTGCCGCAACCCTCAGTCCGAT-TCGATCTTAGAAT-GAGAATGAACTCCATAT
131 AGCTACCGCAACCCTCAGTCCGGTCT-GATCTTAGAATAG-GAATGAACTCCATAT
* * * **
17026418 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCCACCCACGAAATGAGCGTGC-GAGCACTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAG-GCACTCA
* ** * * * * ** *
17026482 GTCGGCTGAAGAGGTGGAATGCACATGTCAGGGATCGGCCCGGTCCCCCCATG-TGTGCTG-TCG
64 GTCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTCAATCCCCCC-TGACGTGCTGCT-G
** * * * * *
17026545 ATCTTGCTGCCACAACCTTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTC
127 ATCCAGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGAATAGGAATGAACTC
17026598 TGTATGCCTA
Statistics
Matches: 298, Mismatches: 56, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
182 2 0.01
183 88 0.30
184 72 0.24
185 132 0.44
186 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCACTCAGT
CGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTCAATCCCCCCTGACGTGCTGCTGATCC
AGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGAATAGGAATGAACTCCATAT
Found at i:17026946 original size:26 final size:26
Alignment explanation
Indices: 17026895--17026947 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17026885 CCGATCTGAT
**
17026895 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17026921 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17026947 C
1 C
17026948 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17027999 original size:26 final size:26
Alignment explanation
Indices: 17027970--17028020 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17027960 CCGATCCAAT
17027970 CTTAGATTGGGAATGAACTCCGTATA
1 CTTAGATTGGGAATGAACTCCGTATA
*
17027996 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGATTGGGAATGAACTCCGTAT
17028021 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATA
Found at i:17028728 original size:26 final size:26
Alignment explanation
Indices: 17028690--17028745 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
17028680 GGCTTAAAAT
17028690 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17028716 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17028742 CTTA
1 CTTA
17028746 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17029291 original size:159 final size:157
Alignment explanation
Indices: 17028898--17029366 Score: 446
Period size: 159 Copynumber: 3.0 Consensus size: 157
17028888 AACTCTGTAT
** * *
17028898 GCTTAGACACAGAATGAACTCTGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTC-A
* * * * *
17028963 CCG-GTCGGAGAGGCAAAATGCGCAAGCC-GAGGATCGACCCAGTCCCCCCTGCATGCTATCGAT
65 GCGAATCGGAGAGGCAAAATGCGCAAGCCAG-GGATC-ACCCGGTCCCCCTTACATGCTATCGAT
*
17029026 CCTGCTGCCACAACCCTCGATCCGGTCTGA
128 CCTGCTGCCACAACCCTCGATCCGGACTGA
* * * * *
17029056 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * * * * *
17029120 GCCAATCCGAGAGGCATAATGCGCAAGCCAGGGATCACCCCGGTCCCCCTTAACGTGCTGTCGGT
65 GCGAATCGGAGAGGCAAAATGCGCAAGCCAGGGATCA-CCCGGTCCCCCTT-ACATGCTATCGAT
* * * * *
17029185 -CTCGTTGCCACAGCCCTCGGT-CTGACTGGG
128 CCT-GCTGCCACAACCCTCGATCCGGACT-GA
* * * *
17029215 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * * *
17029280 CTGACT-GGAGAGACAAAATGCACAAGCCAGGGATCGGCCCGATCCCCCTTGCATGCTATCGATC
66 C-GAATCGGAGAGGCAAAATGCGCAAGCCAGGGATC-ACCCGGTCCCCCTTACATGCTATCGATC
** **
17029344 CTATTGCCGTAACCCTCGATCCG
129 CTGCTGCCACAACCCTCGATCCG
17029367 ATCTGATCTT
Statistics
Matches: 246, Mismatches: 53, Indels: 23
0.76 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 119 0.48
159 121 0.49
160 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CGAATCGGAGAGGCAAAATGCGCAAGCCAGGGATCACCCGGTCCCCCTTACATGCTATCGATCCT
GCTGCCACAACCCTCGATCCGGACTGA
Found at i:17031835 original size:26 final size:26
Alignment explanation
Indices: 17031797--17031849 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17031787 GGCTCAAACT
** *
17031797 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
17031823 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
17031849 C
1 C
17031850 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:17032276 original size:26 final size:26
Alignment explanation
Indices: 17032247--17032299 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17032237 CCAGTCCGAT
17032247 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17032273 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17032299 C
1 C
17032300 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17039218 original size:159 final size:158
Alignment explanation
Indices: 17038917--17039420 Score: 527
Period size: 159 Copynumber: 3.2 Consensus size: 158
17038907 ACTTCGTATA
* * * *
17038917 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACAAGCACTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGC-GTTAGC
* * * * *
17038982 CGACCGAAGAGGCAGAATGCGTAAGCCGAAGATCAACCCGGTCCCCCTCTGCGTGCTGTCGATCC
65 CGACCGAAGAGGCAGAATGCATAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGATGTCGATCC
*
17039047 TGCT-ACAGCAACCCTCGGTCCGGTCTGAT
130 TGCTGCCA-CAACCCTCGGTCCGGTCTGAT
* ** *
17039076 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTGCAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGTT-AG
* * *
17039140 CCGACCGAAGAGGCATAATGCATAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGGTG-CCAGT
64 CCGACCGAAGAGGCAGAATGCATAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGATGTCGA-T
* **
17039204 CCCGCTGCCACAACCCTCGGTCCGGT-TGGGG
128 CCTGCTGCCACAACCCTCGGTCCGGTCT-GAT
* * * * *
17039235 CTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCG-TTAGC
* * * * *
17039300 C-AGCCGGAGAGGCAGAATGCACAAGCC-AGGGATCGGCCCGATCCCCCCCAGCGTGATGTCGAT
65 CGA-CCGAAGAGGCAGAATGCATAAGCCGA-GGATCGACCCGATCCCCCTCTGCGTGATGTCGAT
* * * * ** **
17039363 CTTGCTGCCATAACCCTTGATCCAATCCAAT
128 CCTGCTGCCACAACCCTCGGTCCGGTCTGAT
17039394 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17039421 TTAGACTGGG
Statistics
Matches: 284, Mismatches: 49, Indels: 24
0.80 0.14 0.07
Matches are distributed among these distances:
158 9 0.03
159 269 0.95
160 6 0.02
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGTTAGCC
GACCGAAGAGGCAGAATGCATAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGATGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:17039430 original size:26 final size:26
Alignment explanation
Indices: 17039394--17039446 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17039384 CCAATCCAAT
17039394 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17039420 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17039446 C
1 C
17039447 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17039766 original size:26 final size:26
Alignment explanation
Indices: 17039737--17039789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17039727 CTGGTCCGAT
*
17039737 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17039763 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17039789 C
1 C
17039790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17040395 original size:355 final size:338
Alignment explanation
Indices: 17039076--17040398 Score: 1116
Period size: 343 Copynumber: 3.8 Consensus size: 338
17039066 CCGGTCTGAT
* * ** * *
17039076 CTTAGACT-GGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTGCAGGCGTTGAG
1 CTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * * * * *
17039140 CCGACC-GAAGAGGCATAATGCATAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGGTGCCAGT
65 CCGACCAG-AGAGGCATAATGCGTAAGCCGGGGAT-TAGCCGATCCCCC-CTACATGCTGCGA-T
* * * * *
17039204 CCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCC
126 CCCGCTACCACAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCC
* * * * * * * *
17039269 AACCCACGAAACGGGCA-TACAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCAGGGAT
190 AACCCATGAAACGAG-AGTGCGGGCACTCAGCC-GCCGAAGAGGCAGAATGCGCAAGCCAGGAAT
* * * * * * * * ** * *
17039333 CGGCCCGATCCCCCCCAGCGTGATGTCGATCTTGCTGCCATAACCCTTGA-TCC-AATCCAATCT
253 CGGCCCGGT-CCCCCCTGCATGCTGCCAATCCTGCTGTCGCAACCC-TGAGTCCGGA-CCGATCT
17039396 TAGACTGGGAATGAACTCCGTATG
315 TAGACTGGGAATGAACTCCGTATG
* * * *
17039420 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGAGCGCTCAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * * * *
17039485 CGGCCAGAGAGGCATAATGCGTAAGCTGGGGATTAGCCCAGTCTCCCACTACATGTTGCTGGTCC
66 CGACCAGAGAGGCATAATGCGTAAGCCGGGGATTAGCCGA-TC-CCCCCTACATGCTGC-GATCC
** * *
17039550 CGCTACCACAACCCTCAATCCGGCTGTGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAA
128 CGCTACCACAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAA
* * * * *
17039615 CCCATGAAATGGGAATGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCATGCCAGGTATCGG
192 CCCATGAAACGAGAGTGCGGGCACTCAGCCG-CCGAAGAGGCAGAATGCGCAAGCCAGGAATCGG
* * * * * * *
17039680 CCTGATCACCCCTGCGTGCTGCCAATCCTGCTGTCGCAACCCTTAGTCTGGTCCGATCTTAGACT
256 CCCGGTCCCCCCTGCATGCTGCCAATCCTGCTGTCGCAACCCTGAGTCCGGACCGATCTTAGACT
* *
17039745 AGGAATGAACTCTGTATG
321 GGGAATGAACTCCGTATG
* * * * * *
17039763 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCAAC-AGAACAAACATGTGGACGTTCAG
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGTGGGCGCTCAG
* * * * * *
17039827 CCGATCGGAGAGGCATAATGCGAAAGCCGGGGATTAGCCCGGTCCCCCGCTACGTGCTACCGATC
65 CCGACCAGAGAGGCATAATGCGTAAGCCGGGGATTAG-CCGATCCCCC-CTACATGCT-GCGATC
* *
17039892 CCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
127 CCGCTACCACAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCA
* * * * ** * ** * * *
17039957 ACCCACGAAACGAGCGCGTGGGGGCTCAGTCGGCCGTTGAGGCAGAATGTGCAAGCCGGGGATCG
191 ACCCATGAAACGAGAGTGCGGGCACTCAG-CCGCCGAAGAGGCAGAATGCGCAAGCCAGGAATCG
* * *
17040022 GTCCGGTCCCCCCTGCATGTTGCCGATCTTGCTGCCTGTCCTGCTACCGCAACCCTCGA-TCCGG
255 GCCCGGTCCCCCCTGCATGCTGCC-A-----AT-CCTG--CTG-T--CGCAACCCT-GAGTCCGG
*
17040086 ACCGATCTTAGATTGGGAATGAACTCCGTATG
307 ACCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17040118 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 CTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * *
17040182 CCGACCAGAGAGGCAGAATGCCTAAGCCGGTGATTGGCTCGATCCCCCCTGCATGCTGTCGATCC
65 CCGACCAGAGAGGCATAATGCGTAAGCCGGGGATTAGC-CGATCCCCCCTACATGCTG-CGATCC
** * * * ** * *
17040247 TACTACCACAACCCTCGGTGTGGTTCAATCTTAGAC-TGGGAATGAACTCCTTATGCGTAAGTCA
128 CGCTACCACAACCCTCGGTCTGGCTGAGGCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCA
* * * * * *
17040311 ACCCATGAAACAAGTGTGCGGGCACTGAACCAGCCGAAAAGGCATAATGCGCAAGCCAGGAATCG
191 ACCCATGAAACGAGAGTGCGGGCACTCAGCC-GCCGAAGAGGCAGAATGCGCAAGCCAGGAATCG
*
17040376 ACCCGGTCCCCCTCTGCATGCTG
255 GCCCGGTCCCCC-CTGCATGCTG
17040399 TCGGTCCCGC
Statistics
Matches: 781, Mismatches: 163, Indels: 59
0.78 0.16 0.06
Matches are distributed among these distances:
342 6 0.01
343 282 0.36
344 213 0.27
345 7 0.01
349 1 0.00
350 4 0.01
352 3 0.00
353 5 0.01
354 119 0.15
355 139 0.18
356 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (338 bp):
CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
CGACCAGAGAGGCATAATGCGTAAGCCGGGGATTAGCCGATCCCCCCTACATGCTGCGATCCCGC
TACCACAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCA
TGAAACGAGAGTGCGGGCACTCAGCCGCCGAAGAGGCAGAATGCGCAAGCCAGGAATCGGCCCGG
TCCCCCCTGCATGCTGCCAATCCTGCTGTCGCAACCCTGAGTCCGGACCGATCTTAGACTGGGAA
TGAACTCCGTATG
Found at i:17040540 original size:159 final size:156
Alignment explanation
Indices: 17040117--17040544 Score: 383
Period size: 159 Copynumber: 2.7 Consensus size: 156
17040107 AACTCCGTAT
* **
17040117 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGTGCTCA
1 GCTTAGA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGT-TCGGGCACTCA
* * * * * *
17040181 GCCGACCAGAGAGGCAGAATGCCTAAGCCGGTGATTGGCTCGATCCCCCCTGCATGCTGTCGATC
64 GACGACCGGAGAGGCAGAATGGC-AAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTGTCGATC
* * **
17040246 CTACTACCACAACCCTCGGTGTGGTTCAA
128 CCACTACCACAACCCTCGATCCGGTTCAA
* * * * * * * * * *
17040275 TCTTAGACTGGGAATGAACTCCTTATGCGTAAGTCAACCCATGAAACAAGTGTGCGGGCACTGA-
1 GCTTAGAAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCACTCAG
* * * * * * * * *
17040339 ACCAGCCGAAAAGGCATAATGCGCAAGCCAGGAATCGACCCGGTCCCCCTCTGCATGCTGTCGGT
65 ACGA-CCGGAGAGGCAGAATG-GCAAGCCGGGGATTGGCCCGGTCCCCC-CTGCATGCTGTCGAT
* ***
17040404 CCCGCTACCACAACCCTCGATCCGGTTGGG
127 CCCACTACCACAACCCTCGATCCGGTTCAA
* * * *
17040434 GCTTAGAGATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGGGCATTCGGGCACTCAG
1 GCTTAGA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCACTCAG
* *
17040499 TCGACCGGAGAGGCAGAATGTGCATGCCGGGGATTGGCCCGGTCCC
65 ACGACCGGAGAGGCAGAATG-GCAAGCCGGGGATTGGCCCGGTCCC
17040545 TCCTACGTCC
Statistics
Matches: 203, Mismatches: 60, Indels: 13
0.74 0.22 0.05
Matches are distributed among these distances:
157 3 0.01
158 79 0.39
159 118 0.58
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGAATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCACTCAGA
CGACCGGAGAGGCAGAATGGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTGTCGATCCCA
CTACCACAACCCTCGATCCGGTTCAA
Found at i:17040622 original size:26 final size:26
Alignment explanation
Indices: 17040593--17040645 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17040583 CTGGTTCGAT
17040593 CTTAGAC-TGGGAATGAACT-TCGTATG
1 CTTAGACAT-GGAATGAACTCT-GTATG
17040619 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
17040645 C
1 C
17040646 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:17041866 original size:26 final size:26
Alignment explanation
Indices: 17041815--17041867 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17041805 TCGATCTGAT
*
17041815 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17041841 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17041867 C
1 C
17041868 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17042219 original size:26 final size:26
Alignment explanation
Indices: 17042181--17042230 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17042171 CCAGTCCGAT
17042181 CTTAGACTGGGAATGAACTCTGTAGG
1 CTTAGACTGGGAATGAACTCTGTAGG
17042207 CTTAGACAT-GGAATGAACTCTGTA
1 CTTAGAC-TGGGAATGAACTCTGTA
17042231 TGCCTAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTAGG
Found at i:17043622 original size:26 final size:26
Alignment explanation
Indices: 17043585--17043636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17043575 CGGTCTGATA
17043585 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17043611 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
17043637 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17043907 original size:377 final size:376
Alignment explanation
Indices: 17043209--17043913 Score: 942
Period size: 377 Copynumber: 1.9 Consensus size: 376
17043199 GCTCAAAATT
17043209 TTAGACTGCGAATGAACTCCATATGCTTAGACATGGAATAACCTCCGTAGGCCGAAGCCAACCCA
1 TTAGACTGCGAATGAACTCCATATGCTTAGACATGGAATAACCTCCGTAGGCCGAAGCCAACCCA
* * *
17043274 CAAAATGAGCATGTAGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCG
66 CAAAACGAGCATGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCG
* *
17043339 GTCCCCCCTGCGTGCTGTCAATCCTGCTACTGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGA
131 GTCCCCCCTGCGTGCTATCAATCCTGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGA
* * * * ** *
17043404 ATGAACTCTGTTTTCCTAAGTCAACCCACGAAACGAGAGTTCAGGCACTGTGCCGGCCGGAGAGG
196 ATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTTCAGGCACTAAGCCGACCGGAGAGG
* * * *
17043469 CATAGTGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGAGTGTTGTCGGTCCCGCTGCCACAAC
261 CATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGAGTGCTGTCAGTCCCGCTGCCACAAC
17043534 CCTCGATCCTGTTGCTGGTCCTGCTGTCGCAACCCTCGATTCGGTCTGATA
326 CCTCGATCCTGTTGCTGGTCCTGCTGTCGCAACCCTCGATTCGGTCTGATA
* * * *
17043585 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAA-CTCCGTATGCCTAAGCCAACCC
1 TTAGACTGCGAATGAACTCCATATGCTTAGACATGGAAT-AACCTCCGTAGGCCGAAGCCAACCC
** * * *
17043649 AGGAAACGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGCGCAAG-CTGGGGATC-AGC
65 ACAAAACGAGCATGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGA-C
* * *
17043712 CCGGTCTCTCCCTGCGTGCTATCGATCCTGCTACTGCAACCCTCGGAT-TGGTCT-AGTTTTAGA
128 CCGGTC-CCCCCTGCGTGCTATCAATCCTGCTACTGCAACCCTCGG-TCTGGTCTGA-TCTTAGA
* * * * * *
17043775 CTGGGAATAAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGT-GGGCGCTAAGCCGATC
190 CTAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGT-TCAGGCACTAAGCCGACC
*
17043839 GGAGAGGCATAATGTGCAAGCC-AGGGATC-AGCCCGATCCCCCTCT-ATGTGCTGTCAGTCCCG
254 GGAGAGGCATAATGCGCAAGCCGA-GGATCGA-CCCGATCCCCCTCTGA-GTGCTGTCAGTCCCG
17043901 CTGCCACAACCCT
316 CTGCCACAACCCT
17043914 TGGTTTGGCT
Statistics
Matches: 284, Mismatches: 35, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
375 2 0.01
376 118 0.42
377 162 0.57
378 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (376 bp):
TTAGACTGCGAATGAACTCCATATGCTTAGACATGGAATAACCTCCGTAGGCCGAAGCCAACCCA
CAAAACGAGCATGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCG
GTCCCCCCTGCGTGCTATCAATCCTGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGA
ATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTTCAGGCACTAAGCCGACCGGAGAGG
CATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGAGTGCTGTCAGTCCCGCTGCCACAAC
CCTCGATCCTGTTGCTGGTCCTGCTGTCGCAACCCTCGATTCGGTCTGATA
Found at i:17043911 original size:159 final size:159
Alignment explanation
Indices: 17043609--17044071 Score: 443
Period size: 159 Copynumber: 2.9 Consensus size: 159
17043599 AACTCCGTAT
* * *
17043609 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* ** * * *
17043674 TCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCTCTCCCTGCGTGCTATCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCTCCCCCTACGTGCTATCGATC
* **
17043739 CTGCTACTGCAACCCTCGGATTGGTCT-AG
131 CCGCTACCACAACCCTCGGATTGG-CTGAG
** * ** *
17043768 TTTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAA
* * * * *
17043832 GCCGATCGGAGAGGCATAATGTGCAAGCCAGGGATCAGCCCGATC-CCCCTCTATGTGCTGTC-A
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCTCCCC-CTACGTGCTATCGA
* * * *
17043895 GTCCCGCTGCCACAACCCTTGGTTTGGCTGGG
129 -TCCCGCTACCACAACCCTCGGATTGGCTGAG
* * * * * *
17043927 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * ** ** * *
17043992 CCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCC-AGTC-CCCCCTGCGTGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGA-TCTCCCCCTACGTGCTATCGAT
* * *
17044055 CCTGCTGCCGCAACCCT
130 CCCGCTACCACAACCCT
17044072 TTATCCGATT
Statistics
Matches: 245, Mismatches: 52, Indels: 15
0.79 0.17 0.05
Matches are distributed among these distances:
158 34 0.14
159 210 0.86
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCTCCCCCTACGTGCTATCGATC
CCGCTACCACAACCCTCGGATTGGCTGAG
Found at i:17049866 original size:26 final size:26
Alignment explanation
Indices: 17049825--17049877 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17049815 CTGGTCTGAT
17049825 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17049851 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
17049877 C
1 C
17049878 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17051486 original size:11 final size:10
Alignment explanation
Indices: 17051461--17051486 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
17051451 CTCGTTTTCT
17051461 ATTTTTCAAG
1 ATTTTTCAAG
17051471 ATTTTTCAAG
1 ATTTTTCAAG
17051481 ATTTTT
1 ATTTTT
17051487 GAAATGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.58
Consensus pattern (10 bp):
ATTTTTCAAG
Found at i:17053784 original size:26 final size:26
Alignment explanation
Indices: 17053746--17053798 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17053736 GGCTCAAAAT
17053746 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17053772 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
17053798 C
1 C
17053799 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17053971 original size:26 final size:26
Alignment explanation
Indices: 17053930--17053982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17053920 CTGGTCTAAT
17053930 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17053956 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17053982 C
1 C
17053983 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17054130 original size:44 final size:44
Alignment explanation
Indices: 17054067--17054151 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
17054057 CTTGTGACCA
*
17054067 TTTGAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTTCG
1 TTTGAAGTGGAGAAGATTTTGTAACCATTTGAAAAAAGTGTTCG
*
17054111 TTTGAAGTGGAGAAGATTTTGTAACCGTTTGAAAAAAGTGT
1 TTTGAAGTGGAGAAGATTTTGTAACCATTTGAAAAAAGTGT
17054152 CCCCATTTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.34
Consensus pattern (44 bp):
TTTGAAGTGGAGAAGATTTTGTAACCATTTGAAAAAAGTGTTCG
Found at i:17054372 original size:11 final size:11
Alignment explanation
Indices: 17054352--17054381 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
17054342 CGGTTAGGCT
*
17054352 CTCCGGCGATG
1 CTCCGACGATG
17054363 CTCCGACGATG
1 CTCCGACGATG
17054374 CTCCGACG
1 CTCCGACG
17054382 GTGGTGCCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.13, C:0.40, G:0.30, T:0.17
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:17054781 original size:159 final size:158
Alignment explanation
Indices: 17054480--17054982 Score: 359
Period size: 159 Copynumber: 3.2 Consensus size: 158
17054470 ACTCCGTATG
** * * * * * * * **
17054480 CTTAGACAAGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * * * * *
17054545 CGATCGGAGAGGCATAATGCTCAAGCCGAGGATCGACCTGATCCCTCCCTGTGTGCTATCGATCC
66 CAACCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCC-CCCTGCGTGCTACCGACCC
** * ** *
17054610 TGTTGCTGCAACCCTTGGTCTGGTCT-GAT
130 TACTACCACAACCCTCGGTC-GGTCTAGAT
*
17054639 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTGCGGGCACTCAGC
** * ** * * * *
17054704 CAGTCGAAGAGGCATAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGTC-TGCTATTCGTC
66 CAACCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCC-CTG-CGTGCTA-CCGAC
* * * * * * **
17054768 CC-ACTGCCACAACCATCGATCCGACTGGGG
128 CCTACTACCACAACCCTCGGTCGGTCTAGAT
* * * * * * * *
17054798 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGTGAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTGCGGGCACTCAG
* **
17054862 CCAACCGAAGAGGCAGAATACGTAAGCCGGGGATCGGCTTGATCCCCCCTGCGTGCTACCGACCC
65 CCAACCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGACCC
* * *
17054927 TGCTACCGCAACCCTCGGTCCGAT-TAGAT
130 TACTACCACAACCCTCGGT-CGGTCTAGAT
17054956 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
17054983 TTAAATTGGG
Statistics
Matches: 266, Mismatches: 69, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
157 7 0.03
158 52 0.20
159 201 0.76
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTGCGGGCACTCAGC
CAACCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGACCCT
ACTACCACAACCCTCGGTCGGTCTAGAT
Found at i:17054985 original size:26 final size:26
Alignment explanation
Indices: 17054956--17055008 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17054946 CCGATTAGAT
*
17054956 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
17054982 CTTAAATTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17055008 C
1 C
17055009 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:17055204 original size:26 final size:26
Alignment explanation
Indices: 17055153--17055205 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17055143 CCGATCCGAT
*
17055153 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17055179 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17055205 C
1 C
17055206 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17055282 original size:197 final size:196
Alignment explanation
Indices: 17054925--17055306 Score: 518
Period size: 197 Copynumber: 1.9 Consensus size: 196
17054915 TGCTACCGAC
* *
17054925 CCTGCTACCGCAACCCTCGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAAATT
1 CCTGCTACCGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAACTCCATATGCTTAAATT
* * *
17054990 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGCCGATCGAA
66 GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGAA
* * * *
17055055 GAGGCAGAATGCGCAAGTTGAGGCTCGACCCAGTACCCCCCTGCGTGCTGTCGATCTTGTTGCTG
131 GAGGAAGAATGCACAAGCTGAGGATCGACCCAGT-CCCCCCTGCGTGCTGTCGATCTTGTTGCTG
17055120 GT
195 GT
* * * *
17055122 CCTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACA
1 CCTGCTACCGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAACTCCATATGCTTA-A-A
* ** * * *
17055187 -T-GGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGTGGGTGCTTAGTCGATCG
64 TTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCG
* *
17055250 GAGAGGTAAG-ATGCACAAGCTGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
129 AAGAGG-AAGAATGCACAAGCTGAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATC
17055307 CTGCTGTCGC
Statistics
Matches: 161, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
196 21 0.13
197 135 0.84
198 4 0.02
199 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
CCTGCTACCGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAACTCCATATGCTTAAATT
GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGAA
GAGGAAGAATGCACAAGCTGAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCTTGTTGCTGG
T
Found at i:17055433 original size:158 final size:155
Alignment explanation
Indices: 17055179--17055680 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 155
17055169 ACTTCATATG
* * *
17055179 CTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGTGGGTGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCT-AGCCAACCCACGAAACGAGCGTGTGGGCGCTGAGC
* * *
17055244 CGATCGGAGAGGTAAGATGCACAAGCTGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
65 CG-TCGGAGAGGTAA-ATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * *
17055309 GCTGTCGCAACCCTCGGTCCCGTC-CATT
128 GCTGCCGCAACCCTCGGTCCAGTCTGA-T
* * * *
17055337 CTTAGAC-TGGGAATGAACTCCATATGCCTATGTCAACCCACGAAACGAGTGT-TCAGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTA-GCCAACCCACGAAACGAGCGTGT-GGGCGCTGA
* * ** **
17055400 GCCAGTCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCTTGGTCCCCCGCTGTATGCTGTC-AG
63 GCC-GTCGGAGAGGTA-AATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGA-
* * * * **
17055464 TCCCGCTGGCACAAACCTCGGTCCAG-CTGGGG
124 TCCTGCTGCCGCAACCCTCGGTCCAGTCT-GAT
* * * *
17055496 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGCGC-GTAA
1 CTTAGACATGGAATGAACTCCGTATGCCT-AGCCAACCCACGAAACGAGCGTGTGGGCGCTG-AG
* * * * * * *
17055560 CCGACAGAAGAGGTAGAATGCGCCAGTCGGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCC
64 CCGTC-GGAGAGGTA-AATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
17055625 TACTGCCGCAACCCTCAGT-CTGATCTGAT
127 TGCTGCCGCAACCCTCGGTCCAG-TCTGAT
17055654 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17055681 TTAAACTGGG
Statistics
Matches: 271, Mismatches: 55, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
157 6 0.02
158 143 0.53
159 119 0.44
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAGCCAACCCACGAAACGAGCGTGTGGGCGCTGAGCC
GTCGGAGAGGTAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCT
GCCGCAACCCTCGGTCCAGTCTGAT
Found at i:17055690 original size:26 final size:26
Alignment explanation
Indices: 17055654--17055706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17055644 CTGATCTGAT
*
17055654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
17055680 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17055706 C
1 C
17055707 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:17056065 original size:26 final size:26
Alignment explanation
Indices: 17056036--17056088 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17056026 CCGATCTGAT
17056036 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
17056062 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17056088 C
1 C
17056089 CTAGGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17056512 original size:882 final size:881
Alignment explanation
Indices: 17054994--17056617 Score: 2191
Period size: 882 Copynumber: 1.8 Consensus size: 881
17054984 TAAATTGGGG
* * *
17054994 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGCCGATCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGAAGAGA
** * * * * **
17055059 CAGAATGCGCAAGTTGAGGCTCGACCCAGTACCCCCCTGCGTGCTGTCGATCTTGTTGCTGGTCC
66 CAGAATGCGCAAGCAGAGGATCGACCCAGTACCCCCCTACGTGCTGTCAATCCTACTGCTGGTCC
* ** * *
17055124 TGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACATG
131 TACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACATG
* * *
17055189 GAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGTGGGTGCTTAGTCGATCGGAGA
196 GAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGA
* *
17055254 GGTAAGATGCACAAGCTGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAA
261 GGTAAGATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAA
* * *
17055319 CCCTCGGTCCCGTCCATTCTTAGACTGGGAATGAACTCCATATGCCTATGTCAACCCACGAAACG
326 CCCTCAGTCCCGTCCATTCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACG
* * * * * * **
17055384 AGTGTTCAGGCGCTGAGCCAGTCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCTTGGTCCCCC
391 AGCGTACAGGCACTGAGCCAGCCGGAGAGGCATAATGCGCAAGCAGAGGATCGGC-TCATCCCCC
* *
17055449 GCTGTATGCTGTCAGTCCCGCTGGCACAAACCTCGGTCCAGCTGGGGCTTAGACATGGAATGAAC
455 GCTGTATGCTGCCAGTCCCGCTGCCACAAACCTCGGTCCAGCTGGGGCTTAGACATGGAATGAAC
** ** *
17055514 TCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGCGCGTAACCGACAGAAGAGGTAGAAT
520 TCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCGCGTAACCGACAGAAGAGGCAGAAT
* * * * *
17055579 GCGCCAGTCGGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCCTACTGCCGCAACCCTCAG-
585 GCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAGT
*
17055643 TCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAACTCCGTATGCC
650 TC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAACTCCGTATGCC
*
17055708 TAAGTCAACCCATGAAAAGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCCGGTCGGAGAGGCAT
714 TAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCCGGTCGGAGAGGCAT
17055773 AATGCGCAAGCCGGAGGTCAGCCCGATCCCCCTCTAAGTGCTGTCGATCCGGCTGTCGGTCCTGC
779 AATGCGCAAGCCGGAGGTCAGCCCGATCCCCCTCTAAGTGCTGTCGATCCGGCTGTCGGTCCTGC
17055838 TGCCACAGCCATCGGTCTGGTTAGGGCTTAGACATGGA
844 TGCCACAGCCATCGGTCTGGTTAGGGCTTAGACATGGA
* * * * *
17055876 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGGTGCTTAGTCGGTCGAAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-AGGCGCTCAGCCGATCGAAGAG
* * * *
17055941 ACAGAATGCGTAAGCCAG-GGATCGGCCCGGT-CCCTCCCTACGTGCTGTCAATCCTACTGTTGG
65 ACAGAATGCGCAAG-CAGAGGATCGACCCAGTACCC-CCCTACGTGCTGTCAATCCTACTGCTGG
* * *
17056004 TCCTACTGCCGGAACCCTCAGTCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC
128 TCCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGAC
*
17056069 ATGGAATGAACTCCGTATGCCT-AGGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGA-CT
193 ATGGAATGAACTCCGTATGCCTCA-GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATC-
** * *
17056132 GGAGAGGT-AGAATGCGTAAGCCGAGGATCGGCCCGGTCCCTCCCTGCATGCTGTTGATCCTGCT
256 GGAGAGGTAAG-ATGCACAAGCCGAGGATCGACCCGGTCCC-CCCTGCATGCTGTCGATCCTGCT
** * * *
17056196 G-CTGCAACCCTCAGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACC
319 GTC-GCAACCCTCAGTCCCGTC-CATTCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
* *
17056259 CACAAAACGAGCGTACAGGCACTGAGTC-GACCGGAGAGGCATAATGCGCAAGCTAGA-GATTGG
382 CACAAAACGAGCGTACAGGCACTGAGCCAG-CCGGAGAGGCATAATGCGCAAGC-AGAGGATCGG
* * *
17056322 C-CAT-CCCC-CTTTACGTGCTGCCTA-TCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAG
445 CTCATCCCCCGCTGTA--TGCTGCC-AGTCCCGCTGCCACAAACCTCGGTCCAGCTGGGGCTTAG
* * * *
17056383 ACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGTGC-TCAGCCGGT
507 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCGCGT-AACC-GA
* *
17056447 C-GGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCCTACT
570 CAGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACT
* * ** * *
17056511 GCCGTAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAATTTTGTTTGCTTAGACTGGGGAT
635 GCCGCAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGAT
* *
17056576 GAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
700 GAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGG
17056618 ATGCTCAGTC
Statistics
Matches: 638, Mismatches: 87, Indels: 34
0.84 0.11 0.04
Matches are distributed among these distances:
880 4 0.01
881 5 0.01
882 288 0.45
883 214 0.34
884 124 0.19
885 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (881 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGAAGAGA
CAGAATGCGCAAGCAGAGGATCGACCCAGTACCCCCCTACGTGCTGTCAATCCTACTGCTGGTCC
TACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACATG
GAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGA
GGTAAGATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAA
CCCTCAGTCCCGTCCATTCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACG
AGCGTACAGGCACTGAGCCAGCCGGAGAGGCATAATGCGCAAGCAGAGGATCGGCTCATCCCCCG
CTGTATGCTGCCAGTCCCGCTGCCACAAACCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACT
CCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCGCGTAACCGACAGAAGAGGCAGAATG
CGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAGTT
CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAACTCCGTATGCCTA
AGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCCGGTCGGAGAGGCATAA
TGCGCAAGCCGGAGGTCAGCCCGATCCCCCTCTAAGTGCTGTCGATCCGGCTGTCGGTCCTGCTG
CCACAGCCATCGGTCTGGTTAGGGCTTAGACATGGA
Found at i:17057286 original size:26 final size:26
Alignment explanation
Indices: 17057248--17057300 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17057238 GGCTCAAAAT
*
17057248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
17057274 CTTAGACAT-GGAAAGCACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
17057300 C
1 C
17057301 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17058153 original size:159 final size:157
Alignment explanation
Indices: 17057798--17058259 Score: 493
Period size: 158 Copynumber: 2.9 Consensus size: 157
17057788 AACTCCGTAT
* *
17057798 GCTTAGACATGGAATGAACTCTATATGACTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTC-ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** * * *
17057863 CCGGTCGGAGAGGCAGAATGCGCAAATCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAATCGAGGATCGGCCCGGTCCCCCATGCGTGCTGTCGATCC
* * *
17057928 TGCTCCTGCAACCCTGGGTCTGATCTGA
130 CGCTCCTACAACCCTCGGTCTGATCTGA
* * * * * *
17057956 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCTTA
1 GCTTAGACAT-GGAATGAAC-TCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
17058020 ATCGACCGGAGAGGCATAATGCGCAAGTTGAGGATCGGCCCGGTCCCCCTATGCGTGCTGTCGAT
64 ACCGACCGGAGAGGCAGAATGCGCAAATCGAGGATCGGCCCGGTCCCCC-ATGCGTGCTGTCGAT
* *
17058085 CCCGTTGCC-ACAACCCTCGGTCTGA-CTGGG
128 CCCGCT-CCTACAACCCTCGGTCTGATCT-GA
* * * * *
17058115 GCTTAGACATGGAGTGAACTACCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACT-CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * * *
17058180 CCGACCGAAGAGGCAGAATGCGC-AACCGGGGATTGACCCGATCCCCCCTGTGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAATCGAGGATCGGCCCGGTCCCCCATGCGTGCTGTCGATCC
*
17058244 TGCTACC-ACAACCCTC
130 CGCT-CCTACAACCCTC
17058260 AGTCCAGTCC
Statistics
Matches: 250, Mismatches: 47, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
157 29 0.12
158 112 0.45
159 106 0.42
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCGCAAATCGAGGATCGGCCCGGTCCCCCATGCGTGCTGTCGATCCC
GCTCCTACAACCCTCGGTCTGATCTGA
Found at i:17058324 original size:26 final size:26
Alignment explanation
Indices: 17058273--17058324 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17058263 CCAGTCCGAT
**
17058273 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAATATG
* *
17058299 CTTAGTCTGGGGATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCAATATG
17058325 GCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:17058332 original size:27 final size:26
Alignment explanation
Indices: 17058279--17058332 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17058269 CGATCTTAGA
** *
17058279 CTGGGAATGAACTCCGTATGCTTAGT
1 CTGGGAATGAACTCAATATGCTAAGT
*
17058305 CTGGGGATGAACTCAATATGGCTAAGT
1 CTGGGAATGAACTCAATAT-GCTAAGT
17058332 C
1 C
17058333 AACCCACGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTGGGAATGAACTCAATATGCTAAGT
Found at i:17059902 original size:26 final size:26
Alignment explanation
Indices: 17059852--17059904 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17059842 CTGGTCCGAT
**
17059852 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17059878 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17059904 C
1 C
17059905 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17063052 original size:26 final size:26
Alignment explanation
Indices: 17063001--17063053 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17062991 GGCTCAAAAT
* * *
17063001 CTTAGACTGGGAATGACCTTCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
17063027 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
17063053 C
1 C
17063054 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:17063839 original size:26 final size:26
Alignment explanation
Indices: 17063810--17063860 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17063800 ATGCCGTCGG
17063810 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
17063836 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
17063861 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:17064249 original size:159 final size:158
Alignment explanation
Indices: 17063838--17064287 Score: 410
Period size: 159 Copynumber: 2.8 Consensus size: 158
17063828 CCGTATGCTT
* * * * * *
17063838 AGACATGGAATGAACTCCGTATGTCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTTAGTCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACGAGTGTGCGGGCGCTCAGCCGG
* * * *
17063903 TCGGAGAGGTAGAATGCGTAAGCCGAGGATGAGCCTGGTCCCCCCTA--CGTGTTGTCGATCCTG
66 TCGAAGAGGTAGAATGCGCAAGCCG-GGATCAGCCTGGT-CCCCCTATGCGTGCTGTCGATCCTG
* * *
17063966 CTGCCACAACCCTTGGTCCGGTCCGATCAT
129 CTGCCACAACCCTTGGTCCGCTCCGAGCAG
* * * * * * * * * *
17063996 AGAC-TGGGGACGAACTCCATATGCATAAGTC-ATCCCTCGAAACGAGTGTACGAGCGTTGAGCC
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAATCCAT-GAAACGAGTGTGCGGGCGCTCAGCC
* * * * * ** *
17064059 AGCCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCCCAGTCCCCTTATGCGTGCTGTCGATCCT
64 GGTCGAAGAGGTAGAATGCGCAAGC-CGGGATCAGCCTGGTCCCCCTATGCGTGCTGTCGATCCT
* *
17064124 GCTGCCACAACCCTCT-GTCCGACT-GGGGCAG
128 GCTGCCACAACCCT-TGGTCCG-CTCCGAGCAG
* * *
17064155 AGACATGGAATGAACTCCGTATGCCTAAGCCAATCCATAAAACGAGTGTGCGGGCACTCAACCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACGAGTGTGCGGGCGCTCAGCCGG
* ** *
17064220 TCGAAGAGGTAGAATACGCAAGCCAGGGATC-GACCTGGTCCCCCCCTGCGTGCTGCCGATCCTG
66 TCGAAGAGGTAGAATGCGCAAGCC-GGGATCAG-CCTGGTCCCCCTATGCGTGCTGTCGATCCTG
17064284 CTGC
129 CTGC
17064288 TAGTCCTGCT
Statistics
Matches: 224, Mismatches: 57, Indels: 21
0.74 0.19 0.07
Matches are distributed among these distances:
157 11 0.05
158 71 0.32
159 134 0.60
160 8 0.04
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACGAGTGTGCGGGCGCTCAGCCGG
TCGAAGAGGTAGAATGCGCAAGCCGGGATCAGCCTGGTCCCCCTATGCGTGCTGTCGATCCTGCT
GCCACAACCCTTGGTCCGCTCCGAGCAG
Found at i:17065598 original size:26 final size:26
Alignment explanation
Indices: 17065541--17065599 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
17065531 CTCGGTCTGG
17065541 TCTG-ATG-TTAGACTGGGAATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
**
17065565 TCCATATGCTTAGACTAGGG-ATGAAC
1 TCTGTATGCTTAGACT-GGGAATGAAC
17065591 TCTGTATGC
1 TCTGTATGC
17065600 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 2 0.07
25 3 0.11
26 20 0.71
27 3 0.11
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTGTATGCTTAGACTGGGAATGAAC
Found at i:17065979 original size:26 final size:26
Alignment explanation
Indices: 17065928--17065980 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17065918 CTCATCCGAT
**
17065928 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17065954 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17065980 C
1 C
17065981 CTATGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17066905 original size:367 final size:361
Alignment explanation
Indices: 17066217--17066905 Score: 804
Period size: 368 Copynumber: 1.9 Consensus size: 361
17066207 CCGATCCCGT
* * *
17066217 TGCCACAACCATTGGTCCGGTTGGGGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCC
1 TGCCACAACCATCGGTCCGGCTGGCGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCC
* * * *
17066282 ATGAAACGGGCGTGCGGGCGCTCAGCCAGCCGAAAGAGGCAGAATGTGCAAGCTGGGGATCGACC
66 AGGAAACGAGCGTACGGGCGCTCAGCCAGCCGAAAGAGGCAGAATGCGCAAGCTGGGGATCGACC
17066347 CGATCCCCCCTGCGTGCTGTCGATCCTACTGTCACAACCCTCGATCCGATCCGATCTTAGACTGG
131 CGATCCCCCCTGCGTGCTGTCGATCCTACTGTCACAACCCTCGATCCGATCCGATCTTAGACTGG
* * *
17066412 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATCCTAAGTCAACCCATGAAACGAGT
196 AAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATCCTAAGTCAACCCACGAAACGAGC
* * * * * * *
17066477 GTGCGGGCGTTTAGCCAGCCGGAGACGTCGGCCGAAGAGGCATAATGTGCAAGTAGGGGATCAGC
261 ATGCGAGCG-TCA-CCAGCC-G-GAC--C-GCAGAAGAGGCAGAATGCGCAAGCAGGGGATCAGC
17066542 CCGATTCCCCTCTACGTTCTGCCGATCCCGCTGTCGGTCCTGC
319 CCGATTCCCCTCTACGTTCTGCCGATCCCGCTGTCGGTCCTGC
* * *
17066585 TGCCACAACCCTCGGTTCGGCTGGCGCTTAGTCATAGAATGAACT-CTGTATGCCTAAGCCAACC
1 TGCCACAACCATCGGTCCGGCTGGCGCTTAGACATAGAATGAACTCCT-TATGCCTAAGCCAACC
* ** * * *
17066649 CAGGAAATGAGCGTACGGGCGCTCAGCTGGTCG-GAGAGGTAGAATGCGCAAG-TCGGGGATCGA
65 CAGGAAACGAGCGTACGGGCGCTCAGCCAGCCGAAAGAGGCAGAATGCGCAAGCT-GGGGATCGA
* *
17066712 CCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCTGATCCTGTTACCGTAACCCTC-AGTCCGGT
129 CCCGATCCCCCCTGCGTGCTGTCGATCCTA---CTG-T-C----A-C--AACCCTCGA-TCCGAT
* *
17066776 CCGATCTTAGACTGGAAATGAGCTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTC
181 CCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTAT-CCTAAGTC
** *
17066841 AACCCACGAAACGAGCATGCGAGCG-CA-CAGCC-GA-C-CAG-AGAGGCAGGTTGCGCAAGCCG
245 AACCCACGAAACGAGCATGCGAGCGTCACCAGCCGGACCGCAGAAGAGGCAGAATGCGCAAGCAG
17066900 GGGATC
310 GGGATC
17066906 GAACATGTGG
Statistics
Matches: 272, Mismatches: 33, Indels: 33
0.80 0.10 0.10
Matches are distributed among these distances:
366 1 0.00
367 77 0.28
368 83 0.31
370 4 0.01
371 1 0.00
372 1 0.00
373 2 0.01
376 6 0.02
377 1 0.00
378 2 0.01
379 65 0.24
380 29 0.11
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (361 bp):
TGCCACAACCATCGGTCCGGCTGGCGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCC
AGGAAACGAGCGTACGGGCGCTCAGCCAGCCGAAAGAGGCAGAATGCGCAAGCTGGGGATCGACC
CGATCCCCCCTGCGTGCTGTCGATCCTACTGTCACAACCCTCGATCCGATCCGATCTTAGACTGG
AAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATCCTAAGTCAACCCACGAAACGAGC
ATGCGAGCGTCACCAGCCGGACCGCAGAAGAGGCAGAATGCGCAAGCAGGGGATCAGCCCGATTC
CCCTCTACGTTCTGCCGATCCCGCTGTCGGTCCTGC
Found at i:17067911 original size:159 final size:158
Alignment explanation
Indices: 17067539--17067969 Score: 517
Period size: 159 Copynumber: 2.7 Consensus size: 158
17067529 AACTCTGTAT
* * *
17067539 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
17067604 CCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCTGGT-CCCCCTACATGTTGTCTATCT
66 CCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCC
* * *
17067668 TGCTGCCGCAACCCTCAGTCTGGTCTGA
131 CGCTGCCACAACCCTCAGTCCGGTCTGA
* * * * * *
17067696 TCTTAGAC-TGGGAATGAACTCCTTTTGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
17067760 GCCGACCGAAAAGGCATAACGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGGT
65 GCCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC-CTACATGCTGTCGAT
** *
17067825 CCCGCTGCCACAACCCTTGGTCCGG-CTTGG
129 CCCGCTGCCACAACCCTCAGTCCGGTC-TGA
* * *
17067855 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17067920 CCGGTCGGAGAGGCAGAATGCACAAGTTGGGGATCGACCCGGTCCCCCCT
66 CCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCT
17067970 GCGAGCTGCC
Statistics
Matches: 227, Mismatches: 42, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
156 1 0.00
157 92 0.41
158 7 0.03
159 126 0.56
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCC
CGCTGCCACAACCCTCAGTCCGGTCTGA
Found at i:17068043 original size:26 final size:26
Alignment explanation
Indices: 17068014--17068066 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17068004 CTGATCCAAT
17068014 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
17068040 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
17068066 C
1 C
17068067 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:17068182 original size:184 final size:184
Alignment explanation
Indices: 17067855--17068216 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 184
17067845 TCCGGCTTGG
*
17067855 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
** * * *
17067920 CCGGTCGGAGAGGCAGAATGCACAAGTTGGGGATCGACCCGGTCCCCCCTGCGAGCTGCCGATCC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCATGCGAGCTACCGATCA
* * *
17067985 TACTGTTGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCATAT
131 TACTATCGCAACCCTCGATCTGATCCAATCTTACACTGGGAATGAACTCCATAT
* * *
17068039 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
* * * ** * * * * *
17068104 TCGGTTGGAGAGGTAGAATGCGTAAGCCGGGGA-CTGACCTGGTCCCCCATGCGTGCTATCGTTT
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATC-GACCCGGTCCCCCATGCGAGCTACCGATC
* * * * *
17068168 ATGCTATCGCAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACT
130 ATACTATCGCAACCCTCGATCTGATCCAATCTTACACTGGGAATGAACT
17068217 TCGTACGCAT
Statistics
Matches: 150, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
183 1 0.01
184 149 0.99
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCATGCGAGCTACCGATCA
TACTATCGCAACCCTCGATCTGATCCAATCTTACACTGGGAATGAACTCCATAT
Found at i:17068557 original size:25 final size:26
Alignment explanation
Indices: 17068520--17068571 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
17068510 CCGATGCCAT
17068520 CTTAGACTAGGAATGAACT-CGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17068545 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
17068571 C
1 C
17068572 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 1 0.04
25 17 0.68
26 7 0.28
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17068833 original size:158 final size:157
Alignment explanation
Indices: 17068545--17069045 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 157
17068535 AACTCGTATG
* * * * * *
17068545 CTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACAAACGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAGT-CAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
17068610 TGGTCGGAAAGGCAAAATGCGCAAG-TCGGGGA-CCGACCCGGTCCCCCCTGCGTGCTTTCAATC
65 CGGTCGGAGAGGCAAAATGCGCAAGCT-GGGGATCGGA-CCGGTCCCCCCTGCGTGCTATCAATC
* *
17068673 CTGCTACCGCAACCCTCGGTCTGGTCTGAT
128 CTGCTACCGCAACCCTTGGTCCGGTCTGAT
* *
17068703 CTTAGA-ATGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCCTGC-GGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTA-GTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * **
17068766 CCGGCCGGAGAGGCATAATGCGCAAGCTGGGGATTGGACCGGTCCCCCTCTGCGTGCTGTCGGTC
64 CCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGACCGGTCCCCC-CTGCGTGCTATCAATC
* * * **
17068831 CTGCTGCCACAACCCTTGGTCCCG-CTGGGG
128 CTGCTACCGCAACCCTTGGTCCGGTCT-GAT
* * *
17068861 CTTAGACATGGAATGAACTCCCTATGCCTAAG-CTAACCCACTAAACGGGCGTGCAGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCT-AGTC-AACCCACGAAACGAGCGTGCAGGCGCTCAG
* * ** * * *
17068925 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTTCGGTCCCCCCTACGTGCTACCCATCC
64 CCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGACCGGTCCCCCCTGCGTGCTATCAATCC
*
17068990 TGCTATCGCAACCCTTGGTCCGGTCTGAT
129 TGCTACCGCAACCCTTGGTCCGGTCTGAT
* *
17069019 CTTAGAC-TGGGAATGAATTGCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17069046 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 48, Indels: 24
0.80 0.14 0.07
Matches are distributed among these distances:
157 49 0.17
158 178 0.63
159 56 0.20
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
GGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGACCGGTCCCCCCTGCGTGCTATCAATCCTG
CTACCGCAACCCTTGGTCCGGTCTGAT
Found at i:17069055 original size:26 final size:26
Alignment explanation
Indices: 17069019--17069071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17069009 CCGGTCTGAT
* *
17069019 CTTAGACTGGGAATGAATTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17069045 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17069071 C
1 C
17069072 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17069789 original size:26 final size:26
Alignment explanation
Indices: 17069753--17069805 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17069743 GGCTCAAAAT
17069753 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17069779 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17069805 C
1 C
17069806 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17070948 original size:26 final size:26
Alignment explanation
Indices: 17070919--17070971 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17070909 CCGGTCTGAT
17070919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17070945 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17070971 C
1 C
17070972 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17072863 original size:26 final size:26
Alignment explanation
Indices: 17072834--17072886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17072824 CCAGTCCGAT
17072834 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17072860 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17072886 C
1 C
17072887 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17079479 original size:26 final size:26
Alignment explanation
Indices: 17079450--17079502 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17079440 GACTCAAAAT
17079450 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17079476 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17079502 C
1 C
17079503 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17079673 original size:25 final size:26
Alignment explanation
Indices: 17079645--17079696 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17079635 CCGATCTGAT
*
17079645 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
17079670 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17079696 C
1 C
17079697 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:17080061 original size:26 final size:26
Alignment explanation
Indices: 17080023--17080075 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17080013 CTGGTCTGAT
17080023 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17080049 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17080075 C
1 C
17080076 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17080411 original size:159 final size:158
Alignment explanation
Indices: 17080048--17080487 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 158
17080038 AACTCCATAT
*
17080048 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGTGCTCAG
1 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGTGCTCAG
* * * * *
17080113 TCGGCCGGAGAGGCAGAATGTGCAAGTCGAGGATCGACCCGATCCCCCTTGCGTGTTGTCAATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTGCGTGCTGCCAATCC
* *
17080178 TACTGCCACAACCCTCGGTCCAGTCTGA
131 TACTGCCACAACCCTCGATCCAGGCTGA
* * * * *
17080206 TCTTAG--ATTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTG-TGG-GCAT
1 GCTTAGACATT--GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGTGC--
* *
17080267 TGAGCCGGCTC-GAGAGGCATAATGCGCAAGCCGAGGATC-AGCCCGATCCCCCTCTGCGTGCTG
62 TCAGCCGGC-CGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCCCT-TGCGTGCTG
** * *
17080330 CCGGT-CTCGCTGCCACAACCCTCGATCC-GGCTGGG
124 CCAATCCT-ACTGCCACAACCCTCGATCCAGGCT-GA
* * * * * * *
17080365 GCTTAGACATTGAATTAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGGTCA
1 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCATGCAGGTGCTCA
* * ** * *
17080429 GTCGGCCGGAGAGGCAGAATGCGTAAGCC-AGGGATCGGTCTGATCCCCCTTGGGTGCTG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCCCCCTTGCGTGCTG
17080488 TCGATCCTGC
Statistics
Matches: 230, Mismatches: 35, Indels: 34
0.77 0.12 0.11
Matches are distributed among these distances:
156 4 0.02
157 3 0.01
158 105 0.46
159 112 0.49
160 2 0.01
161 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTGCGTGCTGCCAATCC
TACTGCCACAACCCTCGATCCAGGCTGA
Found at i:17080576 original size:26 final size:26
Alignment explanation
Indices: 17080524--17080576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17080514 CCGATCCAAT
*
17080524 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
17080550 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
17080576 C
1 C
17080577 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:17081578 original size:150 final size:155
Alignment explanation
Indices: 17081243--17081578 Score: 375
Period size: 150 Copynumber: 2.2 Consensus size: 155
17081233 TGGCTCAAAC
17081243 TCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGT
1 TCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-A-GCGGG-ACTCAGT
* * * * * *
17081308 CGGTCAGAGAGGTAGAATGCACAAGTCGGGGATCAGCTCGGTCCCCCTCTACGTGCTGCCGATCT
63 CGGTCAGAAAGGCAGAATACACAAGTCGGGGATCACCTCAGTCCCCCTCTACGTGCTGCCAATCT
*
17081373 CGATACCACAACCCTCGATCCGGCTGGG
128 CGATACCACAACCCTCGATCCGGCTGGA
* * * *
17081401 GCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-G-G-GGG-CTCAGTCG
1 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGCGGGACTCAGTCG
* ** *
17081462 GTCGGAAAGGCAGAATACGTAAGTCGGGGATCGACCT-AG-CCCCC-CTGCGTGCTGCCAATC-C
65 GTCAGAAAGGCAGAATACACAAGTCGGGGATC-ACCTCAGTCCCCCTCTACGTGCTGCCAATCTC
* * *
17081523 TGCTGCCACAACCCTCGATCCAGTCT-GA
129 -GATACCACAACCCTCGATCC-GGCTGGA
17081551 TCTTAGACTGGGAATGAACTCCGTATGC
1 TCTTAGACT-GGAATGAACTCCGTATGC
17081579 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
149 2 0.01
150 56 0.37
151 8 0.05
152 35 0.23
153 3 0.02
154 3 0.02
155 1 0.01
158 8 0.05
159 36 0.24
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (155 bp):
TCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGCGGGACTCAGTCGG
TCAGAAAGGCAGAATACACAAGTCGGGGATCACCTCAGTCCCCCTCTACGTGCTGCCAATCTCGA
TACCACAACCCTCGATCCGGCTGGA
Found at i:17081588 original size:26 final size:26
Alignment explanation
Indices: 17081552--17081604 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17081542 CCAGTCTGAT
17081552 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17081578 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17081604 C
1 C
17081605 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17082028 original size:159 final size:155
Alignment explanation
Indices: 17081780--17082267 Score: 469
Period size: 159 Copynumber: 3.1 Consensus size: 155
17081770 TGCTTAAACA
** * * * *
17081780 TGGAATGAACTCCGTATGCCTAAGCCAGGCCACGAATTGAACGTACGGGTGCTTAGCCGGTCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGA
*
17081845 GAGGCAGAATGAGCAAGCCAGGGATTAGCCTGGTCCCCACCTGCGTGCTGTCGATCCTACTACCG
66 GAGGCAGAAT-AGCAAGCCAGGGATTAGCCTGGTCCCC-CCTGCGTGCTGTCGATCCTACTACCA
17081910 TAACCCTCAGTTCAATCTGATCTTAGAC
129 TAACCCTC-GTTCAATCTGATCTTAGAC
* * *
17081938 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGTCGG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCGG
* * * * * * * *
17082003 AGAGGCATAATACGCAAGCCGGGGA-TCGGCTCGATCCCCCTCTGCGTGATG-CCAGT-CTCGCT
65 AGAGGCAGAATA-GCAAGCCAGGGATTAGCCT-GGTCCCCC-CTGCGTGCTGTCGA-TCCT-ACT
* * * * * * ***
17082065 GCCACAGCCCTCGGTCCAGCTGGGGTGTAGAC
125 ACCATAACCCTCGTTCAATCTGATCT-TAGAC
* * * * *
17082097 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGACAGGAGCATGCGGGCGCTCAGCCGGTCGG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCGG
* * * *
17082162 AGAGGCAGAATATGCAAGCCATGGTTTGGCTTGGTCCCCCCTGCGTGCTGTCGATCCTACTACCA
65 AGAGGCAGAATA-GCAAGCCAGGGATTAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTACTACCA
* ** *
17082227 TAACCCTCGGTCCGGTCTGATCTTAGAA
129 TAACCCTC-GTTCAATCTGATCTTAGAC
17082255 TAGGAATGAACTC
1 T-GGAATGAACTC
17082268 TGTTTGATTA
Statistics
Matches: 259, Mismatches: 58, Indels: 26
0.76 0.17 0.08
Matches are distributed among these distances:
157 1 0.00
158 55 0.21
159 199 0.77
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (155 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGA
GAGGCAGAATAGCAAGCCAGGGATTAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTACTACCATA
ACCCTCGTTCAATCTGATCTTAGAC
Found at i:17083553 original size:26 final size:26
Alignment explanation
Indices: 17083524--17083574 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17083514 CTAGTCCGAT
17083524 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17083550 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
17083575 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17083845 original size:159 final size:159
Alignment explanation
Indices: 17083549--17083914 Score: 395
Period size: 159 Copynumber: 2.3 Consensus size: 159
17083539 AACTCCGTAT
* * *
17083549 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTATGGATGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGACGCTCAG
* * * *
17083614 CCTGCTGGAGAGGCAGAATGCGTAAGCCGAGGACCGATCTGGTCCCCCCTTACGTGCTGTCGATC
66 CCTGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCGATCTGGTCCCCCCTTACATGCTGCCGATC
** * * * *
17083679 CTGCTGCCGCAACCTTCGGTCCG-GTCCGA
131 CCACTGCCACAACCCTCGGTCCGACT-AGA
* * * * *
17083708 TCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGT-TCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAT-GGACGCTC
* * * * * *
17083771 AG-CTGGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGGT-TCGGT-CCCCCTCTGCATGCTGC
64 AGCCT-GCCGGAGAGGCAGAATGCGCAAGCCGAGGACCGATCT-GGTCCCCCCT-TACATGCTGC
*
17083833 CGATCCCACTGCCACAACCCTCGGTCCGACTAGG
126 CGATCCCACTGCCACAACCCTCGGTCCGACTAGA
17083867 GCTTAGACATGGAATGAACTACC-TATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCATGAAACG
17083915 GGCATTCGGG
Statistics
Matches: 171, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
158 12 0.07
159 154 0.90
160 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGACGCTCAG
CCTGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCGATCTGGTCCCCCCTTACATGCTGCCGATC
CCACTGCCACAACCCTCGGTCCGACTAGA
Found at i:17084356 original size:12 final size:12
Alignment explanation
Indices: 17084339--17084378 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
17084329 CCCCCCTGCG
*
17084339 TGCTGCTGATCC
1 TGCTGCTGGTCC
17084351 TGCTGCTGGTCC
1 TGCTGCTGGTCC
*
17084363 TGCTACTGGTCC
1 TGCTGCTGGTCC
17084375 TGCT
1 TGCT
17084379 ACTGCAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.05, C:0.33, G:0.28, T:0.35
Consensus pattern (12 bp):
TGCTGCTGGTCC
Found at i:17084379 original size:12 final size:12
Alignment explanation
Indices: 17084348--17084382 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
17084338 GTGCTGCTGA
*
17084348 TCCTGCTGCTGG
1 TCCTGCTACTGG
17084360 TCCTGCTACTGG
1 TCCTGCTACTGG
17084372 TCCTGCTACTG
1 TCCTGCTACTG
17084383 CAACCCTCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.06, C:0.34, G:0.26, T:0.34
Consensus pattern (12 bp):
TCCTGCTACTGG
Found at i:17084442 original size:26 final size:26
Alignment explanation
Indices: 17084404--17084455 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17084394 CCGATCTGAT
17084404 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17084430 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17084456 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17085037 original size:26 final size:26
Alignment explanation
Indices: 17085001--17085053 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17084991 CCGGTTCGAT
17085001 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
17085027 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17085053 C
1 C
17085054 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17085219 original size:26 final size:26
Alignment explanation
Indices: 17085190--17085239 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17085180 CTGCTGTCAC
*
17085190 ATGCTTAGACATGGAATGACCTCCGT
1 ATGCTTAGACATGGAATGAACTCCGT
17085216 ATGCTTAGACATGGAATGAACTCC
1 ATGCTTAGACATGGAATGAACTCC
17085240 TTCTGCCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
ATGCTTAGACATGGAATGAACTCCGT
Found at i:17085552 original size:159 final size:159
Alignment explanation
Indices: 17085218--17085721 Score: 430
Period size: 159 Copynumber: 3.2 Consensus size: 159
17085208 ACCTCCGTAT
* * * *
17085218 GCTTAGACATGGAATGAACTCCTTCTGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
** * * * * *
17085283 CCGACCGGAGAGGCAGAATGCGTAAGCCTAGGACCGGCCCGATCCCCTCCTGCGTGCTGTCAATC
66 CCGACCAAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCTCCTGCATGCTGCCAATC
* *
17085348 CTGCTGCCACAACCCTCGGTCTGATCCGA
131 CCGCTGCCACAACCCTCGGTCGGATCCGA
* * * * * * *
17085377 TCTTAAAC-TGGAAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAACGCT-CGGGTACTG
1 GCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACG-TGCGGGCACTC
* *
17085440 AGCC-ATCCAAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCC-CTCTGCATGCTGCC
64 AGCCGA-CCAAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCTC-CTGCATGCTGCC
* * * * *
17085503 AGTCCCGCTGCCACATCCCTCGGTCCGGCT-GGG
127 AATCCCGCTGCCACAACCCTCGGT-CGGATCCGA
* * ** * *
17085536 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
** * * * * * ** *
17085601 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCC-AGTCCCC-CCTGCGTGCTATCGAT
66 CCGACCAAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGA-TCCCCTCCTGCATGCTGCCAAT
** * * *
17085664 CTTGCTGCCACAACCCTCGATC-CAGTTCGA
130 CCCGCTGCCACAACCCTCGGTCGGA-TCCGA
* * *
17085694 TCTTAGACAGGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCCTATGC
17085722 TTAGACTGAG
Statistics
Matches: 273, Mismatches: 61, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 60 0.22
159 203 0.74
160 8 0.03
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
CCGACCAAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCTCCTGCATGCTGCCAATC
CCGCTGCCACAACCCTCGGTCGGATCCGA
Found at i:17086085 original size:26 final size:26
Alignment explanation
Indices: 17086047--17086099 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17086037 TCGGTCTGAT
*
17086047 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17086073 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17086099 C
1 C
17086100 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17086558 original size:26 final size:26
Alignment explanation
Indices: 17086522--17086574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17086512 CCAGTCTGAT
17086522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17086548 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17086574 C
1 C
17086575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17087614 original size:26 final size:26
Alignment explanation
Indices: 17087585--17087637 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17087575 CCGATCCTAT
17087585 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
17087611 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
17087637 C
1 C
17087638 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:17087986 original size:159 final size:157
Alignment explanation
Indices: 17087704--17088061 Score: 430
Period size: 159 Copynumber: 2.3 Consensus size: 157
17087694 GAAGAGGTAG
* * * * * * * ***
17087704 AATGCGTAAGCCAGGGATCGGGCTGGTCCCCCCTACGTACTGCTGGTCCTGCTGCCACAACCATC
1 AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGGTCCCATTGCCACAACCATC
* * * *
17087769 AGTCCGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGT
66 AGTCCGACTAGGGCTTAGACAAGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGT
* *
17087834 GCGAGTGCTC-AGTCGACCGGAGAGGCA
131 GCGAGCGCTCAACT-GACCGGAGAGGCA
* * * *
17087861 GAATGCGCAAGCTGGGGATTGGCCCGGTCCTCCTCTGCGTGCTGCCGGTCCCATTGCCACAACCC
1 -AATGCGCAAGCCGGGGATCGGCCCGGTCC-CCCCTGCGTGCTGCCGGTCCCATTGCCACAACCA
* * * *
17087926 TCGGTTCGACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCTAACCCACGAAACGAGC
64 TCAGTCCGACTAGGGCTTAGACAAGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGC
* *
17087991 GTGCGGGCGCTCAACTGGCCGGAGAGGCA
129 GTGCGAGCGCTCAACTGACCGGAGAGGCA
* *
17088020 AATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTG
1 AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTG
17088062 TCGATCCTGC
Statistics
Matches: 167, Mismatches: 31, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
157 11 0.07
158 49 0.29
159 105 0.63
160 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.18
Consensus pattern (157 bp):
AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGGTCCCATTGCCACAACCATC
AGTCCGACTAGGGCTTAGACAAGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGT
GCGAGCGCTCAACTGACCGGAGAGGCA
Found at i:17088391 original size:159 final size:158
Alignment explanation
Indices: 17088135--17088479 Score: 435
Period size: 159 Copynumber: 2.2 Consensus size: 158
17088125 AACTCCGTAT
* *
17088135 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
** * * * *
17088200 CCGGTTGAAGAGGTAGAATGCGTAGGCTGGGGATCGG-CTCGGTCCCCCTCTGCGTGCTACCGGT
66 CCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCT-GGTCCCCC-CTGCGTGCTACCGAT
* *
17088264 CCCGTTGCCACAACCCTCGGTCCGACTAGG
129 CCCGCTGCCACAACCCTCGGTCCGACTAGA
* *
17088294 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCATGCGGGCGCTCA
* * **
17088358 GTCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
65 GCCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATC
** ** *
17088423 TTGCTGCCGTAACCCTCGGTCCGATTAGA
130 CCGCTGCCACAACCCTCGGTCCGACTAGA
*
17088452 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
17088480 TTAGACTGGG
Statistics
Matches: 160, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
157 1 0.01
158 60 0.38
159 97 0.61
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
CCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCC
CGCTGCCACAACCCTCGGTCCGACTAGA
Found at i:17088482 original size:26 final size:26
Alignment explanation
Indices: 17088453--17088505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17088443 CCGATTAGAT
17088453 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17088479 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17088505 C
1 C
17088506 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17088575 original size:343 final size:348
Alignment explanation
Indices: 17087781--17088602 Score: 1104
Period size: 354 Copynumber: 2.4 Consensus size: 348
17087771 TCCGACTGGG
* * * * *
17087781 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGTGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGAGCTCAG
* * * * *
17087846 TCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCTCCTCTGCGTGCTGCCGGTC
66 CCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTC
* *
17087911 CCATTGCCACAACCCTCGGTTCGACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCTA
131 CCATTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCA
* *
17087976 ACCCACGAAACGAGCGTGCGGGCGCTCAACTGGCCGGAGAGGCAAATGTGCAAGCCGGGGATCGG
196 ACCCACGAAACGAGCATGCGGGCGCTCAACTGGCCGGAGAGGCAAATGCGCAAGCCGGGGATCGG
* *
17088041 CCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCTGGTCCTGCTACCGTAACCCTCGGTCCGGTC
261 CCCGGTCCCCCCTGCGTGCTGTCGA--CTGCT-CTGG-CCTG--ACCGTAACCCTCGGTCCGATC
* *
17088106 CGATCTTAGATTGGGAATGAACTCCGTAT
320 AGATCTTAGACTGGGAATGAACTCCGTAT
* *
17088135 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGAGCTCAG
*** * * * *
17088200 CCGGTTGAAGAGGTAGAATGCGTAGGCTGGGGATCGGCTCGGTCCCCCTCTGCGTGCTACCGGTC
66 CCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTC
* *
17088265 CCGTTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
131 CCATTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCA
* * * *
17088330 ACCCATGAAAC-AGGCATGTGGGCGCTC-AGTCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGAT
196 ACCCACGAAACGA-GCATGCGGGCGCTCAACT-GGCCGGAGAGGCA-AATGCGCAAGCCGGGGAT
* *
17088393 CGGCCTGGTCCCCCCTGCGTGCTGTCGA-T-CT-T-G-CTG-CCGTAACCCTCGGTCCGATTAGA
258 CGGCCCGGTCCCCCCTGCGTGCTGTCGACTGCTCTGGCCTGACCGTAACCCTCGGTCCGATCAGA
17088452 TCTTAGACTGGGAATGAACTCCGTAT
323 TCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
17088478 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGTGAGCTCA
1 GCTTACACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGAGCTCA
*
17088542 GCCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTAC
65 GCCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTAC
17088603 TGATCCTGCT
Statistics
Matches: 414, Mismatches: 50, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
342 1 0.00
343 152 0.37
346 3 0.01
348 1 0.00
349 1 0.00
351 2 0.00
352 1 0.00
353 3 0.01
354 207 0.50
355 43 0.10
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.20
Consensus pattern (348 bp):
GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGAGCTCAG
CCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTC
CCATTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCA
ACCCACGAAACGAGCATGCGGGCGCTCAACTGGCCGGAGAGGCAAATGCGCAAGCCGGGGATCGG
CCCGGTCCCCCCTGCGTGCTGTCGACTGCTCTGGCCTGACCGTAACCCTCGGTCCGATCAGATCT
TAGACTGGGAATGAACTCCGTAT
Found at i:17088679 original size:26 final size:26
Alignment explanation
Indices: 17088650--17088702 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17088640 CTGGTCCGAT
17088650 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17088676 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17088702 C
1 C
17088703 CAAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17089198 original size:25 final size:26
Alignment explanation
Indices: 17089152--17089203 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
17089142 TCGGTCCAAT
17089152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17089178 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17089203 C
1 C
17089204 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17089612 original size:170 final size:166
Alignment explanation
Indices: 17089361--17089968 Score: 554
Period size: 170 Copynumber: 3.7 Consensus size: 166
17089351 CTAGCTGGGG
* * * * *
17089361 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTGTGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
17089426 CGATCGGAGTGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTGCGTGCTGTTGATCCT
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTTGA--CT
* *
17089491 GCTGCTGGTCCTGCTGTCGCAACCCTCTGTCCGATCCGGT
129 GCT-CTGGTCCTGCTG-CACAACCCTCTGTCTGATCCGGT
* *
17089531 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGGTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
17089595 TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGACCAACCCGGTCCCCCCTGCGTGCTGTTGA--A
65 TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTTGACTG
* *
17089658 C-CT-G--CTGC--CACAACCCTCGGTCTGATCCGAT
130 CTCTGGTCCTGCTGCACAACCCTCTGTCTGATCCGGT
* * * * * *
17089689 CTTAGAC-TGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
17089753 CCAG-CCAGAGAGGCATAATGCACAAGCCGGGGATCGACCCGAT-CCCCCT--TTAC-G-TG-CT
65 TCGGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTTGACT
* * ** *
17089811 G-TC-GGTCCCGCTGCCACAACCCT-TGGTCTGGTTGGGG
129 GCTCTGGTCCTGCTG-CACAACCCTCT-GTCTGATCCGGT
* * *
17089848 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
17089913 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCTCCCTGCATGCT
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCT
17089969 ATCGATCCTG
Statistics
Matches: 351, Mismatches: 69, Indels: 43
0.76 0.15 0.09
Matches are distributed among these distances:
153 2 0.01
154 3 0.01
155 2 0.01
156 3 0.01
157 8 0.02
158 106 0.30
159 101 0.29
160 7 0.02
161 4 0.01
162 2 0.01
163 1 0.00
164 2 0.01
166 1 0.00
169 1 0.00
170 108 0.31
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (166 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTTGACTGC
TCTGGTCCTGCTGCACAACCCTCTGTCTGATCCGGT
Found at i:17089779 original size:158 final size:156
Alignment explanation
Indices: 17089500--17089980 Score: 530
Period size: 158 Copynumber: 3.0 Consensus size: 156
17089490 TGCTGCTGGT
* * * *
17089500 CCTGCTGTCGCAACCCTCTGTCCGATCCGGTCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
1 CCTGCTGCCACAACCCTCGGTCTGATCCGGTCTTAGACT-GGAATGAACTCCGTATGCCTAAGCC
* * * *
17089565 AACCCACGAAACAAGCGTGCGGGCGGTCAGTCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGACC
65 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCG-AGAGGCAGAATGCGCAAGCCGGGGATC
* *
17089630 AACCCGGTCCCCCCTGCGTGCTGTTGAA
129 GACCCGGTCCCCCCTGCGTGCTGTCGAA
* * * *
17089658 CCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGTC
1 CCTGCTGCCACAACCCTCGGTCTGATCCGGTCTTAGACT-GGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
17089723 AACCCACGAAACGAGCGTGTGGGCACTGAGCCAGCCAGAGAGGCATAATGCACAAGCCGGGGATC
65 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATC
* * * **
17089788 GACCCGATCCCCCTTTACGTGCTGTCGGT
129 GACCCGGTCCCCC-CTGCGTGCTGTCGAA
* * * ** * *
17089817 CCCGCTGCCACAACCCTTGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
1 CCTGCTGCCACAACCCTCGGTCTGATCCGGTCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCC
* * *
17089882 AACCCATGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATC
65 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATC
* * * * *
17089947 GGCCCGGTCCTCCCTGCATGCTATCGAT
129 GACCCGGTCCCCCCTGCGTGCTGTCGAA
17089975 CCTGCT
1 CCTGCT
17089981 ATCGTAACCC
Statistics
Matches: 262, Mismatches: 58, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
158 134 0.51
159 127 0.48
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (156 bp):
CCTGCTGCCACAACCCTCGGTCTGATCCGGTCTTAGACTGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGA
CCCGGTCCCCCCTGCGTGCTGTCGAA
Found at i:17089885 original size:159 final size:158
Alignment explanation
Indices: 17089510--17089961 Score: 505
Period size: 159 Copynumber: 2.8 Consensus size: 158
17089500 CCTGCTGTCG
* *
17089510 CAACCCTCTGTCCGATCCG-GTCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
1 CAACCCTCGGTCTGATCCGAG-CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * * *
17089574 AACAAGCGTGCGGGCGGTCAGTCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGACCAACCCGGTC
65 AACGAGCGTGCGGGCGCTCAGTCGGCCG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC
* * *
17089639 CCCC-CTGCGTGCTGTTGAACCTGCTGCCA
129 CCCCTCTACGTGCTGTCGAACCCGCTGCCA
* * * * *
17089668 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCTGATCCGAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * * *
17089733 ACGAGCGTGTGGGCACTGAGCCAGCCAGAGAGGCATAATGCACAAGCCGGGGATCGACCCGATCC
66 ACGAGCGTGCGGGCGCTCAGTCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC
* **
17089798 CCCTTTACGTGCTGTCGGTCCCGCTGCCA
130 CCCTCTACGTGCTGTCGAACCCGCTGCCA
* * ** * * *
17089827 CAACCCTTGGTCTGGTTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 CAACCCTCGGTCTGATCCGAGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * *
17089891 AACGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTC
65 AACGAGCGTGCGGGCGCTCAGTCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC
17089956 CTCCCT
129 C-CCCT
17089962 GCATGCTATC
Statistics
Matches: 239, Mismatches: 50, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
158 110 0.46
159 125 0.52
160 4 0.02
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
CAACCCTCGGTCTGATCCGAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGTCGGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC
CCTCTACGTGCTGTCGAACCCGCTGCCA
Found at i:17090765 original size:26 final size:26
Alignment explanation
Indices: 17090728--17090779 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17090718 GGCTCAAACT
*
17090728 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17090754 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
17090780 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17091121 original size:26 final size:26
Alignment explanation
Indices: 17091070--17091121 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17091060 CCGGTTCGAT
* *
17091070 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACATATG
*
17091096 CTTAGACTAGGGATGAACTACATATG
1 CTTAGACTAGGAATGAACTACATATG
17091122 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACATATG
Found at i:17091549 original size:159 final size:157
Alignment explanation
Indices: 17091248--17091748 Score: 510
Period size: 159 Copynumber: 3.2 Consensus size: 157
17091238 CTACTGCTGG
* * * *
17091248 TCCTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGC
1 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGC
* ** * * *
17091313 CAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGAAAAGGCAGAATGCGCAAGTCGGGGAC
65 CAACCCACGAAA-GAGCGTGCGGGTGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGAT
* *
17091378 CGACCC-AGTCCCCCCATGCATGTTGTCGA
129 CGGCCCGA-TCCCCCCATGCGTGTTGTCGA
* * * *
17091407 TCTTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGC
* * * * *
17091472 CAACCCACGAAATGAGCGTGTGGGTG-TCGAGCCAATCGGAGAGGTATAATGCGCAAGCCGGGGA
65 CAACCCACGAAA-GAGCGTGCGGGTGCTC-AGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGA
* * *
17091536 TCGGCCCGATCCCCCTC-TGCGTGCTGCCGG
128 TCGGCCCGATCCCCC-CATGCGTGTTGTCGA
* * * * * **
17091566 TCCCGCTGCCACAACCCTCAGT-CTGACTAGGGCTTAGACATGGAATGAACT-TGCTATGCCTAA
1 TCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGAATGAACTCTG-TATGCCTAA
* * * * *
17091629 GCCAACCCATGAAACAGGCGTGCGGGTGCTCAGTCGATCGAAGAGGCAGAATGCGTAAGCTGGGG
63 GCCAACCCACGAAAGA-GCGTGCGGGTGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGG
* *
17091694 ATTGGCCCGAT-CCCTCATGCGTGTTGTCGA
127 ATCGGCCCGATCCCCCCATGCGTGTTGTCGA
*
17091724 TCCTGCTGTCGCAACCCTCGGTCCG
1 TCCTGCTGCCGCAACCCTCGGTCCG
17091749 ATCCTGCTGT
Statistics
Matches: 277, Mismatches: 55, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 39 0.14
159 232 0.84
160 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCTGTATGCCTAAGCC
AACCCACGAAAGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCG
GCCCGATCCCCCCATGCGTGTTGTCGA
Found at i:17091757 original size:26 final size:26
Alignment explanation
Indices: 17091721--17091778 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
17091711 TGCGTGTTGT
17091721 CGATCCTGCTGTCGCAACCCTCGGTC
1 CGATCCTGCTGTCGCAACCCTCGGTC
17091747 CGATCCTGCTGTCGCAACCCTCGGTC
1 CGATCCTGCTGTCGCAACCCTCGGTC
17091773 CGATCC
1 CGATCC
17091779 GATCTTAGAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.12, C:0.43, G:0.22, T:0.22
Consensus pattern (26 bp):
CGATCCTGCTGTCGCAACCCTCGGTC
Found at i:17091811 original size:26 final size:26
Alignment explanation
Indices: 17091782--17091834 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17091772 CCGATCCGAT
*
17091782 CTTAGACTGGATATGAACTCCGCATG
1 CTTAGACTGGAGATGAACTCCGCATG
* *
17091808 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGCATG
17091834 C
1 C
17091835 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGCATG
Found at i:17092871 original size:159 final size:156
Alignment explanation
Indices: 17092532--17093021 Score: 515
Period size: 159 Copynumber: 3.1 Consensus size: 156
17092522 CTGTATGCTG
* * *
17092532 AGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGA
1 AGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGTGCTCAGCCGA
* * * * * ** *
17092597 CCGGAGAGGCAAAAGCGCAAGCCGGGGATCGGCCTGATCTCCCCTACGTGCTGTTGATCCTGCTA
65 TCGGAGAGGCAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTG
* * *
17092662 CCACAACCCTCGGTCCGGTCTGATCTT
130 CCACAACCCTCAGTCCGGACTGAGCTT
* * *
17092689 AGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTG-TCGAGCC
1 AGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGTGCTC-AGCC
* * * *
17092752 AATCGGAGAGGTATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCC
63 GATCGGAGAGGCA-AATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGATCCT
* *
17092817 GCTGCCACAACCCTCAGT-CTGACTAGGGCTT
126 GCTGCCACAACCCTCAGTCCGGACT-GAGCTT
* *
17092848 AGACATGGAATGAACTT-GCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAGCCG
1 AGACATGGAATGAACTTCG-TATGCCTAAGCCAACCCACGAAAGA-GCGTGCGGGTGCTCAGCCG
* * * * *
17092912 GTCGAAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGATCCCTCCTGCGTGCTGCCGATCCTGC
64 ATCGGAGAGGCA-AATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGC
* * * * *
17092977 TGTCGCAACCCTCGGTCC-GATCCGATCTT
128 TGCCACAACCCTCAGTCCGGA-CTGAGCTT
17093006 AGAC-TGGATATGAACT
1 AGACATGGA-ATGAACT
17093022 CCGCATGCTT
Statistics
Matches: 276, Mismatches: 45, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
156 3 0.01
157 65 0.24
158 83 0.30
159 122 0.44
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
AGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAGAGCGTGCGGGTGCTCAGCCGAT
CGGAGAGGCAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGC
CACAACCCTCAGTCCGGACTGAGCTT
Found at i:17093032 original size:26 final size:26
Alignment explanation
Indices: 17093003--17093055 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17092993 CCGATCCGAT
*
17093003 CTTAGACTGGATATGAACTCCGCATG
1 CTTAGACTGGAGATGAACTCCGCATG
* *
17093029 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGCATG
17093055 C
1 C
17093056 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGCATG
Found at i:17093929 original size:183 final size:184
Alignment explanation
Indices: 17093570--17093934 Score: 468
Period size: 183 Copynumber: 2.0 Consensus size: 184
17093560 GCTGGGGCTT
* * * *
17093570 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGTGCTTAGCTGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGA
* ** * **
17093635 CCGGAAAGGCAGAATGCTCAAGCCGGGGATCAGCTTGGTCCCTTCTACATGCTGTCGATCATGCT
66 CCGGAAAGGCAGAAAGCTCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCATGCT
** **
17093700 GTCGTAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTG
131 ACCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTG
* *
17093754 AGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-TCG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCT-G
* * * * * *
17093818 ACTGGAGAGGCA-AAAGCGT-AAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTTGATCCTG
65 ACCGGAAAGGCAGAAAGC-TCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCATG
*
17093881 CTACCACAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGC
129 CTACCACAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGC
17093935 CTAAGTCAAC
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
182 2 0.01
183 86 0.55
184 67 0.43
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGA
CCGGAAAGGCAGAAAGCTCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCATGCT
ACCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTG
Found at i:17094086 original size:159 final size:157
Alignment explanation
Indices: 17093756--17094218 Score: 529
Period size: 159 Copynumber: 2.9 Consensus size: 157
17093746 GTATGCTGAG
* * *
17093756 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACT
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCT
* * * **
17093821 GGAGAGGCAAA-AGCGTAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTTGATCCTGCTAC
66 GGAGAGGCAAATA-CGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCCACTAC
* * *
17093885 CACAACCCTCGGTCCGGTCTGATCTTAG
130 CACAACCCTCGGTCCGGACTGAGCTTAA
* * * * **
17093913 AC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTAAACCGGC
1 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGC
* * *
17093977 TGGAGAGGCATAATACGCAAGCCAGGGATCGACCCGATCCCCTTCTGCGTGCTGTCGATCCCACT
65 TGGAGAGGCA-AATACGCAAGCCGGGGATCGGCCCGATCCCC-CCTGCGTGCTGTCGATCCCACT
* *
17094042 GCCACAACCCTCGGTCC-GACTGGGGCTTAA
128 ACCACAACCCTCGGTCCGGACT-GAGCTTAA
* *
17094072 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TAGGCGTGCGGGTGCTCAGTCGGC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCAGTCGGC
* * ** * * **
17094136 CGGATAGGCAGAATGTGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCCTGCTA
65 TGGAGAGGCA-AATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCCACTA
**
17094201 CCGTAACCCTCGGTCCGG
129 CCACAACCCTCGGTCCGG
17094219 TTTGATCTTA
Statistics
Matches: 253, Mismatches: 45, Indels: 14
0.81 0.14 0.04
Matches are distributed among these distances:
156 1 0.00
157 63 0.25
158 62 0.25
159 126 0.50
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCT
GGAGAGGCAAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCCACTACC
ACAACCCTCGGTCCGGACTGAGCTTAA
Found at i:17094275 original size:26 final size:26
Alignment explanation
Indices: 17094225--17094277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17094215 CCGGTTTGAT
**
17094225 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17094251 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17094277 C
1 C
17094278 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17094620 original size:26 final size:26
Alignment explanation
Indices: 17094591--17094643 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17094581 CTGGTCCGAT
17094591 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
17094617 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17094643 C
1 C
17094644 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17094822 original size:354 final size:342
Alignment explanation
Indices: 17093908--17094873 Score: 1026
Period size: 354 Copynumber: 2.8 Consensus size: 342
17093898 CCGGTCTGAT
* * * *
17093908 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTAAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
17093973 CGGCTGGAGAGGCATAATACGCAAGCCAGGGATCGACCCGATCCCCTTCTGCGTGCTGTCGATCC
66 CGGC-GGAGAGGCATAATGCACAAGCTGGGGATCGACCCGATCCCCTCCTGCGTGCTGTCGATCC
** * *
17094038 CACTGCCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAA
130 TGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
17094103 CCCACGAAA-TAGGCGTGCGGGTGCTCAGTCGGCCGGATAGGCAGAATGTGCAAGCCGGGGATCG
195 CCCACGAAACGA-GCGTGCGGGCGCTCAGTCGGTTGGAGAGGCAGAATGTGCAAGCAGGGGATCG
* * ** * **
17094167 GCTCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGTAACCCTCGGTCCGGTTTGATCTTAGAC
259 GCCCGATCCCCCCTGCATGCTATCGATCCTGCTACCCCAACCCTCGATCCGGTCCGATCTTAGAC
**
17094232 TGGGAATGAACTTTGTATG
324 TGGGAATGAACTCCGTATG
* * *
17094251 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGTGGGCG-TCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * **
17094315 CAGCCGGAGAGGCATAATGCACAAGCTGGGGATCAACCCAGCCCCCCTCTACATGCTGTTGATTC
66 C-GGCGGAGAGGCATAATGCACAAGCTGGGGATCGACCC-GATCCCCTC--C-TGC-G-TG----
* * *
17094380 CACTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAAATTCGTA
120 --CTGTCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
* * *
17094445 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGGTTGGAGAGGCAGAATGTGCAA
183 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTTGGAGAGGCAGAATGTGCAA
* *
17094510 GCTGGGGATCGGCCCGATCCCCCCTGTATGCTATCGATCTTGCTACTGGTCCTACTACCCCAACC
248 GCAGGGGATCGGCCCGATCCCCCCTGCATGCTATCGA---T-C--CT-G-----CTACCCCAACC
*
17094575 CTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
301 CTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17094617 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
17094681 CTGGTCAGAGAGGCAGAATGCACAAGCTGGGGACCGACCCGATCCCC-CCTGCGTGCTGTCGATC
65 CCGG-CGGAGAGGCATAATGCACAAGCTGGGGATCGACCCGATCCCCTCCTGCGTGCTGTCGATC
* ** * * ** *
17094745 TTGCTGCCGTAACCTTCGGTCCGA-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT
129 CTGCTGCCACAACCCTCGGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
* * * * * *
17094808 CAACCCACGAAACGAGTGTGCGGGCACTGAGTCGATTGGAGAGGCACAATGCGCAAGCAGGGGAT
192 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTTGGAGAGGCAGAATGTGCAAGCAGGGGAT
17094873 C
257 C
17094874 AACCTGGTCC
Statistics
Matches: 514, Mismatches: 78, Indels: 51
0.80 0.12 0.08
Matches are distributed among these distances:
342 33 0.06
343 62 0.12
345 1 0.00
346 3 0.01
347 1 0.00
348 2 0.00
353 2 0.00
354 257 0.50
355 1 0.00
357 1 0.00
358 1 0.00
360 4 0.01
361 2 0.00
362 3 0.01
363 1 0.00
365 1 0.00
366 102 0.20
367 37 0.07
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCGGAGAGGCATAATGCACAAGCTGGGGATCGACCCGATCCCCTCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGTCGGTTGGAGAGGCAGAATGTGCAAGCAGGGGATCGGC
CCGATCCCCCCTGCATGCTATCGATCCTGCTACCCCAACCCTCGATCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:17094964 original size:159 final size:156
Alignment explanation
Indices: 17094617--17095060 Score: 480
Period size: 159 Copynumber: 2.8 Consensus size: 156
17094607 ACTCCGTATG
* ** *
17094617 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * **
17094682 TGGTCAGAGAGGCAGAATGCACAAGCTGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCTT
66 -GATCGGAGAGGCAGAATGCACAAGC-GGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCC
* * * *
17094747 GCTGCCGTAACCTTCGGTCCGATCCGAT
129 GCTGCCATAACCCTAGCTCCGATCCGAT
* * *
17094775 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
17094839 TCGATTGGAGAGGCACAATGCGCAAGCAGGGGATCAACCTGGTCCCCCTCTGCGTGCTGTCGGTC
65 -CGATCGGAGAGGCAGAATGCACAAGC-GGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATC
* * *
17094904 CCGCTGCCATAACCCTAGCTCTGA-CTGGGT
127 CCGCTGCCATAACCCTAGCTCCGATC-CGAT
* * *
17094934 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCAGGCACTTAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCAG
* * * *
17094998 CCGACCGGAGAGGCAGAATTCACAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGAT
65 -CGATCGGAGAGGCAGAATGCACAAG-CGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
17095061 GCTGCTGTTG
Statistics
Matches: 236, Mismatches: 43, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 106 0.45
159 127 0.54
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
GATCGGAGAGGCAGAATGCACAAGCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCCGC
TGCCATAACCCTAGCTCCGATCCGAT
Found at i:17095126 original size:867 final size:854
Alignment explanation
Indices: 17093529--17095195 Score: 2137
Period size: 867 Copynumber: 1.9 Consensus size: 854
17093519 CCGATCCAGT
* *
17093529 TGTCGGTCCTGCTGCCACACCCCTCGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCGTATGC
1 TGTCGGTCCTGCTGCCACAACCCTCGGTCCTGCTGGGGCTTAGACATGGAATGAAATCCGTATGC
* ** * *
17093594 CTAAGCCAACCCACAAAACGAGTGTGCGGGTGCTTAGCTGGCCGGAAAGGCAGAATGCTCAAGCC
66 CTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAGCCGGCCGGAAAGGCAGAATGCTCAAGCC
** * ** * * *
17093659 GGGGATCAGCTTGGTCCCTTCTACATGCTGTCGATCATGCTGTCGTAACCCTCAGTCCGGTTCGA
131 GGGGATCAGCCCGATCCCCCCTACATGCTATCGATCATGCTGTCCTAACCCTCAGTCCGGTCCGA
17093724 TCTTAGACTGGGAATGAACTCCGTATGCTGAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
196 TCTTAGACTGGGAATGAACTCCGTATGCTGAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
* * ** * *
17093789 CACGAAACGAGCGTGCGGGCGCTCAGTCGACTGGAGAGGCAAAAGCGTAAGCCGGGGATCGGCCC
261 CACAAAACGAGCGTGCGGGCGCTCAGTCGACTAGAGAGGCAAAAGCACAAGCCGGGGACCGACCC
* * *
17093854 GATCCCCCCTACGTGCTGTTGATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGG
326 GATCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGG
* * ** *
17093919 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTAAACCGGCTGGAGAG
391 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAACCGACTGGAGAG
* * *
17093984 GCATAATACGCAAGCCAGGGATCGACCCGATCCCCTTCTGCGTGCTGTCGATCCCACTGCCACAA
456 GCACAATACGCAAGCCAGGGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAA
* * *
17094049 CCCTCGGTCCGACTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATA
521 CCCTAGCTCCGACTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA
* ** * * * * *
17094114 GGCGTGCGGGTGCTCAGTCGGCCGGATAGGCAGAATGTGCAAGCCGGGGATCGGCTCGATCCCCC
586 GGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATGTACAAGCCGGGGATCGGCCCGATCCCCC
* * * *
17094179 CTGCGTGCTATCGATCCTGCTACCGTAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACT
651 CTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACT
*** * *
17094244 TTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGTGGGC
716 CCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAGAAAACGAGCGTGTGGAC
17094309 G-TCAGCC-AGCCGGAGAGGCATAATGCACAAGCTGGGGATCAACCCAGCCCCCCTCTACATGCT
781 GCTCAGCCGA-CC-GAGAGGCATAATGCACAAGCTGGGGATCAACCCAGCCCCCCTCTACATGCT
17094372 GTTGATTCCAC
844 GTTGATTCCAC
*
17094383 TGTCGGTCCTGCTGCCACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAAATTCGTATG
1 TGTCGGTCCTGCTGCCACAACCCTCGGTCCTG-CTGGGGCTTAGACATGGAATGAAATCCGTATG
** ** *
17094447 CCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGGTTGGAGAGGCAGAATG-TGCAAG
65 CCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAGCCGGCCGGAAAGGCAGAATGCT-CAAG
* * ** *
17094511 CTGGGGATCGGCCCGATCCCCCCTGTATGCTATCGATCTTGCTACTGGTCCTACTACCC-CAACC
129 CCGGGGATCAGCCCGATCCCCCCTACATGCTATCGATCATG---CT-GTCCTA--ACCCTC-A--
* *
17094575 CTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC-TCTG
185 ---G-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTGAGACATGGAATGAACTTC-G
* * * *
17094639 TATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGCTGGTC-AGAGAGGCAGAATGCA
245 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG-TCGACTAGAGAGGCA-AAAGCA
* * * * ** *
17094703 CAAGCTGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCTTGCTGCCGTAACCTTCGGTCCG
308 CAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCG
*
17094768 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGC
373 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* ** * * * *
17094833 ACTGAGTCGATTGGAGAGGCACAATGCGCAAG-CAGGGGATCAACCTGGTCCCCCTCTGCGTGCT
438 ACTAAACCGACTGGAGAGGCACAATACGCAAGCCA-GGGATCAACCCGATCCCCCTCTGCGTGCT
* * * * * *
17094897 GTCGGTCCCGCTGCCATAACCCTAGCTCTGACTGGGTCTTAGACATGGAATGAACTCCCTATGCC
502 GTCGATCCCACTGCCACAACCCTAGCTCCGACTGGGGCTTAAACATGGAATGAACTCCCTATGCC
* *
17094962 TAAGCCAACCCACGAAACAGGCGTGCAGGCACTTAGCCGACCGGAGAGGCAGAAT-TCACAAGTC
567 TAAGCCAACCCACGAAACAGGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATGT-ACAAGCC
* * * *** *
17095026 GGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATGCTGCTGTTGCATCCCTCGGTCCGATCTGA
631 GGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCCGATCTGA
* * *
17095091 TTTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACC
696 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* *
17095156 CATAAAATGAGCGTGTGGACGCTCAGCCGACCGAGAGGCA
761 CAGAAAACGAGCGTGTGGACGCTCAGCCGACCGAGAGGCA
17095196 GGATACGCAA
Statistics
Matches: 687, Mismatches: 104, Indels: 31
0.84 0.13 0.04
Matches are distributed among these distances:
853 2 0.00
854 141 0.21
857 2 0.00
858 5 0.01
859 1 0.00
860 5 0.01
865 3 0.00
866 104 0.15
867 415 0.60
868 8 0.01
869 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (854 bp):
TGTCGGTCCTGCTGCCACAACCCTCGGTCCTGCTGGGGCTTAGACATGGAATGAAATCCGTATGC
CTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAGCCGGCCGGAAAGGCAGAATGCTCAAGCC
GGGGATCAGCCCGATCCCCCCTACATGCTATCGATCATGCTGTCCTAACCCTCAGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTGAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
CACAAAACGAGCGTGCGGGCGCTCAGTCGACTAGAGAGGCAAAAGCACAAGCCGGGGACCGACCC
GATCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAACCGACTGGAGAG
GCACAATACGCAAGCCAGGGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTGCCACAA
CCCTAGCTCCGACTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA
GGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATGTACAAGCCGGGGATCGGCCCGATCCCCC
CTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACT
CCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAGAAAACGAGCGTGTGGAC
GCTCAGCCGACCGAGAGGCATAATGCACAAGCTGGGGATCAACCCAGCCCCCCTCTACATGCTGT
TGATTCCAC
Found at i:17096010 original size:26 final size:26
Alignment explanation
Indices: 17095981--17096060 Score: 115
Period size: 26 Copynumber: 3.1 Consensus size: 26
17095971 TCTGATCCGA
* * *
17095981 GCTTAGACTAGGAATGAACTCTGTAT
1 GCTTAGACTGGGGATGAACTCCGTAT
*
17096007 GCTTAGACTGGGGATGAACTCCATAT
1 GCTTAGACTGGGGATGAACTCCGTAT
*
17096033 GCTTAGATTGGGGATGAACTCCGTAT
1 GCTTAGACTGGGGATGAACTCCGTAT
17096059 GC
1 GC
17096061 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (26 bp):
GCTTAGACTGGGGATGAACTCCGTAT
Found at i:17096978 original size:26 final size:26
Alignment explanation
Indices: 17096949--17097001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17096939 CCGGTTCGAT
17096949 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17096975 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17097001 C
1 C
17097002 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17097333 original size:170 final size:170
Alignment explanation
Indices: 17096974--17097345 Score: 412
Period size: 171 Copynumber: 2.2 Consensus size: 170
17096964 AACTCCGTAT
* * *
17096974 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * * * * * *
17097039 CCGGCCGGAGAAGCATAATGCATAAGTCAGGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCGATC
65 CCGACCGAAGAAGCAGAATGCACAAGTCAGGGATGAGCCCGATCCCCCTCTACGTGCTATCGATC
* * *
17097104 CTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGG
130 CTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTAGA
* * * *
17097145 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * *
17097210 CCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCCGATCCCCC-CTACGTGCTATCGAT
65 CCGACCGAAGAAGCAGAATGCACAAGTCAGGGAT-GAGCCCGATCCCCCTCTACGTGCTATCGAT
***
17097273 CCTGCTG-CTGGTCCTGCTACTGTAACCCTCGATCCGG-T-GCAA
129 CCTGCTGTC-GGTCCTGCTACCACAACCCTCGATCCGGCTAG--A
* *
17097315 TCTTAGACTGGAAATGAACTCTGTATGCCTA
1 GCTTAGACTGG-AATGAACTCCGTATGCCTA
17097346 GACATGGAAT
Statistics
Matches: 168, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
168 1 0.01
169 5 0.03
170 67 0.40
171 93 0.55
172 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCAGGCGCTCAAC
CGACCGAAGAAGCAGAATGCACAAGTCAGGGATGAGCCCGATCCCCCTCTACGTGCTATCGATCC
TGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTAGA
Found at i:17097356 original size:26 final size:26
Alignment explanation
Indices: 17097318--17097371 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
17097308 GGTGCAATCT
*
17097318 TAGACTGGAAATGAACTCTGTATGCC
1 TAGACTGGAAATGAACTCCGTATGCC
17097344 TAGACATGG-AATGAACTCCGTATGCC
1 TAGAC-TGGAAATGAACTCCGTATGCC
17097370 TA
1 TA
17097372 ATTCAACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCC
Found at i:17097489 original size:355 final size:353
Alignment explanation
Indices: 17096791--17101272 Score: 2152
Period size: 355 Copynumber: 12.7 Consensus size: 353
17096781 CTGGTCTGAT
* * * * *
17096791 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCTACCCATGAAACGAGCGTACGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * * * *
17096855 TCGATCGGAGAGGTAGAATGCGTAAGTCGAGGA-CTGACTCGATCCCCCCTGCGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATC-GACCCGATCCCCCCTACGTGCTATCGATC
* * *
17096919 -CTGCTG-CC----CAAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTT
129 TCTGCTGTCCTGTACGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
17096978 AGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGG
194 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGAGCCGG
* ** * * *
17097043 CCGGAGAAGCATAATGCATAAGTCAGGGATTAGCCCGGTCCCCCTCTGCGTGC-TGTCGATCCTG
259 CCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGC-TGCATG-CTA-CC-G
*
17097107 CTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGG
320 --GTC--T-CTGCTACCACAACCCTCGGTCCGGCTAGGG
*
17097146 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* *
17097211 CGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCT
66 CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGAT-CT
* * * *
17097276 GCTGCTGGTCCTGCTACTGTAACCCTCGATCCGGTGCAATCTTAGACTGGAAATGAACTCTGTAT
130 -CTGCT-GTCCTG-TAC-G-AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
17097341 GCCTAGACAT-GGAATGAACTCCGTATGCCTAATTCAACCTACGAAACAAGCGTTCAGGCGTTGA
190 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGA
**
17097405 GCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCTTGG-CCCCCT-T-CTGCATGCTACC
254 GCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCTGCATGCTACC
* * *
17097467 GGTCTC-GTTACCACAGCCCTCGGTCCGGCTGGGG
319 GGTCTCTGCTACCACAACCCTCGGTCCGGCTAGGG
* * *
17097501 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * *
17097566 CGGCCGGAGAGGC-GAATGCGTAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGAT-GATC-
66 CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCT-ATCGATCT
* * *
17097628 CTAC-GT-C-G--C-AACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
130 CTGCTGTCCTGTACGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
17097687 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGC
195 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-A---AGC--GT--TCAGGC-GC
* *
17097752 TAGAG-AGGCTGATCGGAGAGGTATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTG
251 T-GAGCCGGC----CGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGT-CCCC-CT-C-TG
* * * * *
17097816 CTGCCGATCCCGCTACCGGTC-CTGCTGCCACCACCCTCGGTTCAGCTGGGG
307 CTG-C-AT---GCTACCGGTCTCTGCTACCACAACCCTCGGTCCGGCTAGGG
** *
17097867 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * * *
17097932 CAACCGGAGAGGCAGAATACGTAAGTCGGGGATTGACCCGGTCTCCCCT-TGTATGCTGTCGGTC
66 CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACG--TGCTATCGAT-
17097996 CTGCTGCTGGTCCTGCTACCGCAACCCT---T--GGTCCGATC-----C---------A------
128 CT-CTGCT-GTCCTG-TA-CG-AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * * * *
17098036 AT-CTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAAGAAGCGTGCGGGCGCTC
188 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTG
* * * * * * * *
17098100 AGCCAGCCGGAGTGGCAGAATCCGTAAGCCGGGGA-CTAGCCAGGTCCATCCCTACGTGCTATCT
253 AGCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATC-AGCCCGGTCC--CCCT-C-TGCT-GC-
* * * *** * *** * **
17098164 ATCCTATTGCC-GTAACCCTCGGTCCGGT-CCGATCTTAGATTGGGAATGAACTCCATATG
311 ATGCTA---CCGGT----CTC--T--GCTACC-A-C-AACCCTCGGTCCG-GCT--A-GGG
* * * *
17098223 CTTATACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
** * * * * ** * *
17098288 CGGTCGGAGAGGCAGAATGAGTAAGTCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCAATC-C
66 CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCTC
17098352 TGCTG-CC-G--C-AA-CC-C--T-CGGT-C---C----A----G--T---CT--G-AT-CTTAG
131 TGCTGTCCTGTACGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * * * * * *
17098386 ACCGAGAATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCACTGAGCCGACT
196 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGAGCCGGCC
* * * ** * * *
17098451 GGAGAGGCATAATACGTAAGCCGAAGATCAGCCCGAT-CCCC-CT-CTGCATGCTGCCAGTC-CT
261 GGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCTGCATGCTACCGGTCTCT
* * * *
17098512 GCTATCACAACTCTCGATCTGGCTAGGG
326 GCTACCACAACCCTCGGTCCGGCTAGGG
* * * * * * *
17098540 CTTAGACATGGAATGAACACCCTACGCCTAAACCAACCCACGAAAC-AGGCATGTGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCAA
** * * * * * * * *
17098604 CCGGTCGGAAAGGTAGAATACGTAGGCCAGGGATCAACCCGATCCCCCC-AGCGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTA-CGTGCTATCGATC
* * * *
17098668 -CTACTG---T-AAC-AACCCTCGATTCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTT
129 TCTGCTGTCCTGTACGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
17098727 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACAGGCACTCAACCGG
194 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGAGCCGG
* * * *
17098792 CCAGAAAGGCATAATGCGCAAGTCGGGGATTAGCCCGGTCCCCCTCTGCGTGC-TGCCGATCCTG
259 CCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGC-TGCATG-CTA-CC-G
17098856 CTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGGG
320 --GTC--T-CTGCTACCACAACCCTCGGTCCGGCTAGGG
* *
17098895 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
** *
17098960 CGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCT
66 CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGAT-CT
* * * *
17099025 GCTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTGCAATCTTAGACTGGAAATGAACTCTGTAT
130 -CTGCT-GTCCTG-TA-CG-AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
17099090 GCCTAGACAT-GGAATGAACTCCGTATGCCTAATTCAACCTACGAAACAAGCGTTCAGGCGTTGA
190 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGA
** *
17099154 GCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCTTGG-CCCCCT-T-CTGCGTGCTACC
254 GCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCTGCATGCTACC
* * * * * *
17099216 GATCTC-GTTACCACAGCTCTCGGTCTGGCTGGGG
319 GGTCTCTGCTACCACAACCCTCGGTCCGGCTAGGG
* * * *
17099250 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGGGTGTGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * *
17099315 CGGCCGGAGAGGC-GAATGCGTAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGAT-GATC-
66 CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCT-ATCGATCT
* * * *
17099377 CTAC-GT-C-GT---AACCCTCGATCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
130 CTGCTGTCCTGTACGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * * *
17099436 GACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGT
195 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGAGCC---
* * * *
17099501 TAGAAAGGCTGATTGGAGAGGTATAATGCGCAAGTCAGGGATCAGCCTGGTCCCCCTCTACGTGC
257 ------GGC----CGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGT-CCCC-CT-C-TGC
* * * * * *
17099566 TGCCGATCCCGCTGCCGGTC-CTGCTGCCACCACCCTCGGTTCAGCTGGGG
308 TG-C-AT---GCTACCGGTCTCTGCTACCACAACCCTCGGTCCGGCTAGGG
* ** *
17099616 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * *** *
17099681 CAACCGGAGAGGCAGAATACGTAAGTCGGGGATTGACCCGATCTCTCCTTTTATGCTATCGGTCC
66 CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATC-CCCCCTACGTGCTATCGAT-C
* * * *
17099746 TGCTGCTGGTCCTGCTATCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTA
129 T-CTGCT-GTCCTG-TA-CG-AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
** * * * * *
17099811 ----T-G-C-------GAA------A-G-C-----CAACCCATAAAAGAAGCGTACGGGTGCTCA
189 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGA
* * * * ** * * * **
17099850 GCCAGTCGGAGAGGTAGAATCTGTAAGCCGGGGACCGGCCAGTTCCATCCCTACGTGCTATCTAT
254 GCCGGCCGGAGAGGCATAATGCGCAAGTC--GG---GG--A--T-CA-GCC--CG-G---TC-CC
* * ** * * * *** * * ** *
17099915 CCTACTGCGGTAACCT-TCGGT-TC-GGT-CCGATCTTAGATTGGGAATGAACTCCATA-TG
301 CCT-CTGCTGCATGCTACCGGTCTCTGCTACC-A-C-AACCCTCGG--T--CCGGC-TAGGG
* * * *
17099972 CTTAGACATGGAATGAAC-CCTGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 CTTAGACATGGAATGAACTCC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
*** * * * ** * *
17100036 CCGGTTGGAGAGGCAGAATGAGTAAGTCGGGGATCGGCTC-AGTCCCCCCTGTGTGCTGTCAATC
65 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGA-TCCCCCCTACGTGCTATCGATC
* * * *
17100100 -CTGCTGT-C-GT---AACCTTCGGTCTGGTCTGATC-T----T----A-G-A-T-C----G---
129 TCTGCTGTCCTGTACGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * * *
17100139 AGA------ATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCACTGAGCCGA
194 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGAGCCGG
* * * * ** * * *
17100198 CTGGAGAGGCATAATACGTAAGCCGAAGATCAGCCCGAT-CCCC-CT-CTGCATGCTGCCAGTC-
259 CCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCTGCATGCTACCGGTCT
* * * *
17100259 CTGCTATCACAACTCTCGATCTGGCTAGGG
324 CTGCTACCACAACCCTCGGTCCGGCTAGGG
* * * * * * *
17100289 CTTAGACATGGAATGAACACCCTACGCCTAAACCAACCCACGAAAC-AGGCATGTGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCAA
** * * * * * * * *
17100353 CCGGTCGGAAAGGTAGAATACGTAGGCCAGGGATCAACCCGATCCCCCC-AGCGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTA-CGTGCTATCGATC
* * * *
17100417 -CTACTG---T-AAC-AACCCTCGATTCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTT
129 TCTGCTGTCCTGTACGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
17100476 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACAGGCACTCAACCGG
194 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGAGCCGG
* * * *
17100541 CCAGAAAGGCATAATGCGCAAGTCGGGGATTAGCCCGGTCCCCCTCTGCGTGC-TGCCGATCCTG
259 CCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGC-TGCATG-CTA-CC-G
*
17100605 CTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGG
320 --GTC--T-CTGCTACCACAACCCTCGGTCCGGCTAGGG
* *
17100644 CTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
** *
17100709 CGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCT
66 CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGAT-CT
* * * *
17100774 GCTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTGCAATCTTAGACTGGAAATGAACTCTGTAT
130 -CTGCT-GTCCTG-TA-CG-AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * *
17100839 GCCTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
190 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGA
* * * * * *
17100903 GCCGACCGGAGAGGTAGAATGCGCAAGTTGGGGATCGGCCCGATCCCCCCCTGCGTGCTACCGAT
254 GCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGT--CCCCCT-C-TGCT---G--
* * * *
17100968 CCTGCTGCTGGTC-CTGCTACCACAACCCTCGATCCGATGCGATCTTAGACTGAGAATGAACTCC
310 CATGCTACCGGTCTCTGCTACCACAACCCTCG----G-T-C---C---GGCT----A-G------
17101032 GTATG
352 G---G
* * * *
17101037 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * ** *
17101102 C-AGCTGTAGAGGTAGAATGCGCAAGCCGGGGATTGACCCGATCCCCCCGGCGTGCTGTCGATC-
66 CGA-CCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCT
* * * *
17101165 CTGCTGT-C-G--C-AACCTTC-AGTCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTT
130 CTGCTGTCCTGTACGAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
17101224 AGACTGGGGATCAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGT
194 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
17101273 GCGGATGCTC
Statistics
Matches: 3166, Mismatches: 607, Indels: 682
0.71 0.14 0.15
Matches are distributed among these distances:
316 4 0.00
317 232 0.07
318 7 0.00
319 2 0.00
320 2 0.00
321 14 0.00
322 13 0.00
323 7 0.00
324 4 0.00
325 1 0.00
326 3 0.00
327 2 0.00
328 3 0.00
329 1 0.00
330 8 0.00
331 3 0.00
332 5 0.00
333 3 0.00
334 8 0.00
335 1 0.00
336 5 0.00
337 5 0.00
338 4 0.00
339 6 0.00
340 5 0.00
341 178 0.06
342 69 0.02
343 314 0.10
344 11 0.00
345 10 0.00
346 14 0.00
347 17 0.01
348 8 0.00
349 18 0.01
350 17 0.01
351 28 0.01
352 22 0.01
353 6 0.00
354 148 0.05
355 647 0.20
356 218 0.07
357 13 0.00
358 18 0.01
359 10 0.00
360 5 0.00
361 9 0.00
362 10 0.00
363 13 0.00
364 8 0.00
365 7 0.00
366 211 0.07
367 460 0.15
368 21 0.01
369 8 0.00
370 2 0.00
371 14 0.00
372 1 0.00
373 7 0.00
374 3 0.00
375 5 0.00
376 13 0.00
377 1 0.00
378 1 0.00
379 4 0.00
380 2 0.00
381 122 0.04
383 2 0.00
384 1 0.00
387 1 0.00
388 1 0.00
389 2 0.00
390 6 0.00
392 2 0.00
393 110 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (353 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCTC
TGCTGTCCTGTACGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGCTGAGCCGGCC
GGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCTGCATGCTACCGGTCTCT
GCTACCACAACCCTCGGTCCGGCTAGGG
Done.