Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 146 of 402
Found at i:17097686 original size:26 final size:26
Alignment explanation
Indices: 17097657--17097709 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17097647 CTGATCCGAT
17097657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17097683 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17097709 C
1 C
17097710 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17098729 original size:26 final size:26
Alignment explanation
Indices: 17098700--17098750 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17098690 GGTCCGATCC
17098700 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
17098726 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17098751 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17099082 original size:170 final size:170
Alignment explanation
Indices: 17098723--17099094 Score: 439
Period size: 171 Copynumber: 2.2 Consensus size: 170
17098713 AACTCCGTAT
* * *
17098723 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACAGGCACTCAA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCACTCAA
* * * * * * *
17098788 CCGGCCAGAAAGGCATAATGCGCAAGTCGGGGATTAGCCCGGTCCCCCTCTGCGTGCTGCCGATC
65 CCGACCAGAAAGGCAGAATGCACAAGTCGGGGATGAGCCCGATCCCCCTCTACGTGCTACCGATC
* *
17098853 CTGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGG
130 CTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTAGA
* * * * **
17098894 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCACTCAA
* *
17098959 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGA-CCCGATCCCCC-CTACGTGCTACCGAT
65 CCGACCAGAAAGGCAGAATGCACAAGTCGGGGAT-GAGCCCGATCCCCCTCTACGTGCTACCGAT
*
17099022 CCTGCTG-CTGGTCCTGCTACCGCAACCCTCGATCCGG-T-GCAA
129 CCTGCTGTC-GGTCCTGCTACCACAACCCTCGATCCGGCTAG--A
* *
17099064 TCTTAGACTGGAAATGAACTCTGTATGCCTA
1 GCTTAGACTGG-AATGAACTCCGTATGCCTA
17099095 GACATGGAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
168 1 0.01
169 5 0.03
170 70 0.41
171 93 0.54
172 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.19
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCACTCAAC
CGACCAGAAAGGCAGAATGCACAAGTCGGGGATGAGCCCGATCCCCCTCTACGTGCTACCGATCC
TGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTAGA
Found at i:17099105 original size:26 final size:26
Alignment explanation
Indices: 17099067--17099120 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
17099057 GGTGCAATCT
*
17099067 TAGACTGGAAATGAACTCTGTATGCC
1 TAGACTGGAAATGAACTCCGTATGCC
17099093 TAGACATGG-AATGAACTCCGTATGCC
1 TAGAC-TGGAAATGAACTCCGTATGCC
17099119 TA
1 TA
17099121 ATTCAACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCC
Found at i:17100478 original size:26 final size:26
Alignment explanation
Indices: 17100449--17100499 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17100439 GGTCCGATCC
17100449 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
17100475 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17100500 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17100720 original size:514 final size:519
Alignment explanation
Indices: 17099227--17100726 Score: 1423
Period size: 514 Copynumber: 2.9 Consensus size: 519
17099217 ATCTCGTTAC
* * *
17099227 CACAGCTCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACTCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
* * * *
17099292 AAACAAGG-GTGTGGGTGCTCAACCGGCCGGAGAGG-CGAATGCGTAAGCCGGGGATCGGCCCGG
66 AAAC-AGGCGTGTGGGTGCTCAGCCGGTCGGAGAGGTAGAAT-CGTAAGCCGGGGATCGGCCCGA
* * * *
17099355 TCCCTCCTGCGTGCTGAT-GATCCTAC-GTCGTAACCCTCGA-TCTGATCCGATCTTAGATTGGG
129 TCCCCCCAGCGTGCTG-TCGATCCTACTGTAGTAACCCTCGATTC-GGTCCGATCTTAGATTGGG
*
17099417 AATGAACTCCGTATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGC
192 AATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* *
17099482 GTGCGGGTGCTCAGCCGGTTAGAAAGGCTGATTGGAGAGGTATAATGCGCAAGTCAGGGATCAGC
256 GTGCGGGCGCTCAGCCGGTTAGAAAGGC-------------ATAATGCGCAAGTCGGGGATCAGC
* * * * * * *
17099547 CTGGTCCCCCTCTACGTGCTGCCGATCCCGCTGCCGGTCCTGCTGCCACCACCCTCGGTTCAGCT
308 CCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCT
* *
17099612 GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACT
373 -GGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT
* * ** * *
17099677 CAGCCAACCGGAGAGGCAGAATACGTAAGTCGGGGATTGACCCGATCTCTCCTTTTATGCTATCG
437 CAGCCGACCGGAGAGGCAGAATACGTAAGCCGAAGATAGACCCGATCTCTCC-TCTATGCTATC-
*
17099742 GTCCTGCTGCTGGTCCTGCTAT
500 G-CCTGC-GCTAGTCCTGCTAT
* * * * * * ** * *
17099764 CGCAACCCTTGGTCCAGTCCA-ATCTTAGAC-TGGGAATGAACTCCGTATG-CGAAAGCCAACCC
1 CACAACTCTCGGT-CTGGCTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAA-CCAACCC
** * * ** * * *
17099826 ATAAAAGAAGCGTACGGGTGCTCAGCCAGTCGGAGAGGTAGAATCTGTAAGCCGGGGACCGGCCA
63 ACGAAACAGGCGTGTGGGTGCTCAGCCGGTCGGAGAGGTAGAATC-GTAAGCCGGGGATCGGCCC
* * * * ** * *
17099891 GTTCCATCCCTA-CGTGCTATCTATCCTACTGCGGTAACCTTCGGTTCGGTCCGATCTTAGATTG
127 GATCC--CCCCAGCGTGCTGTCGATCCTACTGTAGTAACCCTCGATTCGGTCCGATCTTAGATTG
* * * *
17099955 GGAATGAACTCCATATGCTTAGACATGGAATGAAC-CCTGTATGCCCAAGCCAACCCACGAAACG
190 GGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCC-GTATGCCTAAGTCAACCCACGAAACG
* * * * * * * * *
17100019 AGCGTGCGGGCGTTCAGCCGGTTGGAGAGGCAGAATGAGTAAGTCGGGGATCGGCTCAGTCCCCC
253 AGCGTGCGGGCGCTCAGCCGGTTAGAAAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCC
* * * * * **
17100084 -CTGTGTGCTGTCAATCCTGC--T--GT-C-G-T-----AACCTTCGGTCTGGTCTGATCTTAG-
318 TCTGCGTGCTGCCGATCCTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGG-CTGGGCTTAGA
* * *
17100135 -ATCGAGAATGAACT-TCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCACTGAGCCGA
382 CAT-G-GAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGA
* * *
17100198 CTGGAGAGGCATAATACGTAAGCCGAAGATCAG-CCCGATC-C-CC-CTCTGC-AT-G-CTGC-C
444 CCGGAGAGGCAGAATACGTAAGCCGAAGAT-AGACCCGATCTCTCCTCTATGCTATCGCCTGCGC
17100255 -AGTCCTGCTAT
508 TAGTCCTGCTAT
* * *
17100266 CACAACTCTCGATCTGGCTAGGGCTTAGACATGGAATGAACACCCTACGCCTAAACCAACCCACG
1 CACAACTCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
* * * * **
17100331 AAACAGGCATGTGGGTGCTCAGCCGGTCGGAAAGGTAGAATACGTAGGCCAGGGATCAACCCGAT
66 AAACAGGCGTGTGGGTGCTCAGCCGGTCGGAGAGGTAGAAT-CGTAAGCCGGGGATCGGCCCGAT
** * *
17100396 CCCCCCAGCGTGCTGTCGATCCTACTGTAACAACCCTCGATTCGGTCCGATCCTAGACTGGGAAT
130 CCCCCCAGCGTGCTGTCGATCCTACTGTAGTAACCCTCGATTCGGTCCGATCTTAGATTGGGAAT
* * *
17100461 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTA
195 GAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * ** *
17100526 CAGGCACTCAACCGGCCAGAAAGGCATAATGCGCAAGTCGGGGATTAGCCCGGTCCCCCTCTGCG
259 CGGGCGCTCAGCCGGTTAGAAAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCG
17100591 TGCTGCCGATCCTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGA
324 TGCTGCCGATCCTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCT-GGGCTTAGACATGGA
* ** *
17100656 ATGAACTCTGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGG
388 ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
17100721 CAGAAT
453 CAGAAT
17100727 GCACAAGTCG
Statistics
Matches: 762, Mismatches: 159, Indels: 107
0.74 0.15 0.10
Matches are distributed among these distances:
500 5 0.01
501 148 0.19
502 118 0.15
503 7 0.01
504 1 0.00
505 4 0.01
506 2 0.00
507 2 0.00
508 1 0.00
509 3 0.00
510 4 0.01
512 4 0.01
513 4 0.01
514 178 0.23
515 5 0.01
516 2 0.00
519 1 0.00
520 1 0.00
521 1 0.00
522 2 0.00
526 15 0.02
527 26 0.03
536 6 0.01
537 66 0.09
538 29 0.04
539 14 0.02
540 110 0.14
541 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (519 bp):
CACAACTCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
AAACAGGCGTGTGGGTGCTCAGCCGGTCGGAGAGGTAGAATCGTAAGCCGGGGATCGGCCCGATC
CCCCCAGCGTGCTGTCGATCCTACTGTAGTAACCCTCGATTCGGTCCGATCTTAGATTGGGAATG
AACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCCGGTTAGAAAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTG
CTGCCGATCCTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGCTTAGACATGGAATG
AACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAG
AATACGTAAGCCGAAGATAGACCCGATCTCTCCTCTATGCTATCGCCTGCGCTAGTCCTGCTAT
Found at i:17100831 original size:170 final size:170
Alignment explanation
Indices: 17100472--17100843 Score: 430
Period size: 171 Copynumber: 2.2 Consensus size: 170
17100462 AACTCCGTAT
* * * *
17100472 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACAGGCACTCAA
1 GCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCACTCAA
* * * * * * *
17100537 CCGGCCAGAAAGGCATAATGCGCAAGTCGGGGATTAGCCCGGTCCCCCTCTGCGTGCTGCCGATC
65 CCGACCAGAAAGGCAGAATGCACAAGTCGGGGATGAGCCCGATCCCCCTCTACGTGCTACCGATC
* * *
17100602 CTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGG
130 CTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTAGA
* * * * **
17100643 GCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCACTCAA
* *
17100708 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGA-CCCGATCCCCC-CTACGTGCTACCGAT
65 CCGACCAGAAAGGCAGAATGCACAAGTCGGGGAT-GAGCCCGATCCCCCTCTACGTGCTACCGAT
*
17100771 CCTGCTG-CTGGTCCTGCTACCGCAACCCTCGATCCGG-T-GCAA
129 CCTGCTGTC-GGTCCTGCTACCACAACCCTCGATCCGGCTAG--A
*
17100813 TCTTAGACTGGAAATGAACTCTGTATGCCTA
1 GCTTAGACTGG-AATGAACTCTGTATGCCTA
17100844 GACATGGAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
168 1 0.01
169 5 0.03
170 70 0.41
171 92 0.54
172 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCACTCAAC
CGACCAGAAAGGCAGAATGCACAAGTCGGGGATGAGCCCGATCCCCCTCTACGTGCTACCGATCC
TGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTAGA
Found at i:17100854 original size:26 final size:26
Alignment explanation
Indices: 17100816--17100869 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
17100806 GGTGCAATCT
*
17100816 TAGACTGGAAATGAACTCTGTATGCC
1 TAGACTGGAAATGAACTCCGTATGCC
17100842 TAGACATGG-AATGAACTCCGTATGCC
1 TAGAC-TGGAAATGAACTCCGTATGCC
17100868 TA
1 TA
17100870 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCC
Found at i:17101040 original size:26 final size:26
Alignment explanation
Indices: 17101011--17101063 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17101001 CCGATGCGAT
*
17101011 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCCTATG
17101037 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
17101063 C
1 C
17101064 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:17101052 original size:197 final size:196
Alignment explanation
Indices: 17100643--17101170 Score: 790
Period size: 197 Copynumber: 2.7 Consensus size: 196
17100633 TCCGGCTAGG
* * *
17100643 GCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
17100708 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
66 CCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
* * *
17100773 TGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTGCAATCTTAGACTGGAAATGAACTCTGTA
131 TGCTGCTGGTCCTGCTACCACAACCCTCGATCCGATGCAATCTTAGACTGGAAATGAACTCCGTA
17100838 T
196 T
* * *
17100839 GCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
17100904 CCGACCGGAGAGGTAGAATGCGCAAGTTGGGGATCGGCCCGATCCCCCCCTGCGTGCTACCGATC
66 CCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGAT-CCCCCCTGCGTGCTACCGATC
*
17100969 CTGCTGCTGGTCCTGCTACCACAACCCTCGATCCGATGCGATCTTAGACT-GAGAATGAACTCCG
130 CTGCTGCTGGTCCTGCTACCACAACCCTCGATCCGATGCAATCTTAGACTGGA-AATGAACTCCG
17101033 TAT
194 TAT
* * *
17101036 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * **
17101101 CC-AGCTGTAGAGGTAGAATGCGCAAGCCGGGGATTGACCCGATCCCCCCGGCGTGCTGTCGATC
66 CCGA-CCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATC
17101165 CTGCTG
130 CTGCTG
17101171 TCGCAACCTT
Statistics
Matches: 299, Mismatches: 30, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
196 125 0.42
197 174 0.58
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
TGCTGCTGGTCCTGCTACCACAACCCTCGATCCGATGCAATCTTAGACTGGAAATGAACTCCGTA
T
Found at i:17101224 original size:26 final size:26
Alignment explanation
Indices: 17101195--17101247 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17101185 CTGATCCGAT
* *
17101195 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
17101221 CTTAGACTGGGGATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17101247 C
1 C
17101248 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17101925 original size:158 final size:158
Alignment explanation
Indices: 17101637--17101933 Score: 355
Period size: 158 Copynumber: 1.9 Consensus size: 158
17101627 GTATGCCTAG
* * *
17101637 ACATGGAATGAACTCCATATGCCTATGCCAACCCATGAAACAACGTGCGGGCGCTCAGCCGACTG
1 ACATGGAATGAACTCCATATGCCGAAGCCAACCCACGAAACAACGTGCGGGCGCTCAGCCGACTG
* * * * * * * * * ** * *
17101702 GAGAGGCTGAATGCGCAAGCTGTGGATTGGCTCGGTCCCCCTCTATGTGCTGCCGATCCCGCTGC
66 AAAAGGCAGAATGCACAAGCCGGGGATCGACCCAATCCCCCTCTACGTGCTGCCGATCCCACTGC
17101767 CACAACCTTAAGTCCGATTGGGGCTTAA
131 CACAACCTTAAGTCCGATTGGGGCTTAA
* * *
17101795 ACATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAACGGACTTGCGGGCGCTCAGCCGA-T
1 ACATGGAATGAACTCCATATGCCGAAGCCAACCCACGAAAC-AACGTGCGGGCGCTCAGCCGACT
* * *
17101859 CGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCAATCCCCC-CTGCGTGCTGTCGATCCTACT
65 -GAAAAGGCAGAATGCACAAGCCGGGGATCGACCCAATCCCCCTCTACGTGCTGCCGATCCCACT
*
17101923 GCCGCAACCTT
129 GCCACAACCTT
17101934 CGGTCTGGTT
Statistics
Matches: 114, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
158 64 0.56
159 50 0.44
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
ACATGGAATGAACTCCATATGCCGAAGCCAACCCACGAAACAACGTGCGGGCGCTCAGCCGACTG
AAAAGGCAGAATGCACAAGCCGGGGATCGACCCAATCCCCCTCTACGTGCTGCCGATCCCACTGC
CACAACCTTAAGTCCGATTGGGGCTTAA
Found at i:17101993 original size:26 final size:26
Alignment explanation
Indices: 17101948--17101998 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17101938 CTGGTTCGAT
* *
17101948 CTTAGACTGAGAATGGACTCCGTATG
1 CTTAGACTGAGAATGAACTCAGTATG
* *
17101974 CTTAGACTGGGGATGAACTCAGTAT
1 CTTAGACTGAGAATGAACTCAGTAT
17101999 AACTTAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCAGTATG
Found at i:17102379 original size:160 final size:158
Alignment explanation
Indices: 17102066--17102388 Score: 375
Period size: 160 Copynumber: 2.0 Consensus size: 158
17102056 GAAGAGGTAG
* * * *
17102066 AATGTCCAAGTCGGGGATCAGCTTGGTCCCCCCTGCGTCCTTCCGATCTTGCTGCCACAACCCTT
1 AATGCCCAAGTCGGGGATCAGCTCGGTCCCCCCTGCGTCCTTCCGATCTCGCTGCCACAACCCTC
* * * * ** *
17102131 GGTCTGATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCAT
66 GATCTGAGCTGAGCTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCAT
*
17102196 TCAGGCGCTGAGCCGGCTGGAGAGGCAT
131 TCAGGCGCTGAGCCGGCTGGAGAGGCAA
* *
17102224 AATGCCCAAGTCGGGGATCAGCTCGGTCCCCCTCTGCGTGCTGT-TGATCTCGCTGCCACAACCC
1 AATGCCCAAGTCGGGGATCAGCTCGGTCCCCC-CTGCGTCCT-TCCGATCTCGCTGCCACAACCC
*
17102288 TCGAATCTG-GCTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
64 TCG-ATCTGAGCT-GAGCTTAGA-ATGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* * * * * *
17102351 GGCGTGT-GGGCGCTTAGTCGGTTGGAGAGGCAA
126 AGCAT-TCAGGCGCTGAGCCGGCTGGAGAGGCAA
17102384 AATGC
1 AATGC
17102389 GTAGCCGGGG
Statistics
Matches: 138, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
158 30 0.22
159 30 0.22
160 75 0.54
161 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
AATGCCCAAGTCGGGGATCAGCTCGGTCCCCCCTGCGTCCTTCCGATCTCGCTGCCACAACCCTC
GATCTGAGCTGAGCTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCAT
TCAGGCGCTGAGCCGGCTGGAGAGGCAA
Found at i:17102496 original size:26 final size:26
Alignment explanation
Indices: 17102460--17102512 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17102450 TTGATTCGAT
*
17102460 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
17102486 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
17102512 C
1 C
17102513 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:17102672 original size:513 final size:513
Alignment explanation
Indices: 17101634--17102721 Score: 1194
Period size: 513 Copynumber: 2.1 Consensus size: 513
17101624 TCCGTATGCC
* * * * *
17101634 TAGACATGGAATGAACTCCATATGCCT-ATGCCAACCCATGAAAC-AACGTGCGGGCGCTCAGCC
1 TAGACTTGGAATGAACTCCGTATGCCTAAT-CCAACCCATGAAACGAGCATGCAGGCGCTCAGCC
* * ** *
17101697 GACTGGAGAGGCTGAATGCGCAAGCTGTGGATTGGCTCGGTCCCCCTCTATGTGCTGCCGATCCC
65 GACTGGAGAGGCTGAATGCCCAAGCTGGGGATCAGCTCGGTCCCCCTCTACGTGCTGCCGATCCC
* * *
17101762 GCTGCCACAACCTTAAGTCCGATTGGGGCTTAAACATGGAATGAACTCCCTATGCCGAAGCCAAC
130 GCTGCCACAACCTGAAGTCCGACTAGGGCTTAAACATGGAATGAACTCCCTATGCCGAAGCCAAC
* *
17101827 CCACGAAACGGACTTGCGGGCGCTCAGCCGATCGAAAAGGCAGAATGCACAAGCCGGGGATCGAC
195 CCACGAAACGGACGTGCGGGCGCTCAGCCGATCGAAAAGGCAAAATGCACAAGCCGGGGATCGAC
** * * *
17101892 CCAATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCTTCGGTCTGGTTCGATCTTAGACTG
260 CCAATCCCCCCTGCGTGCTAACGATCCTACTACCACAACCTTCGGTCTGATTCGATCTTAGACTG
* * *
17101957 AGAATGGACTCCGTATGCTTAGACTGGGGATGAACTCAGTATAACTTAGTCAACCCATGAAATGA
325 AGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCAGTATAACTAAGTCAACCCATGAAACGA
* * * * * *
17102022 GCGTGCGGGCGCTCAGCCAACTGGAGAGGCCGACGAAGAGGTAGAATGTCCAAGTCGGGGATCAG
390 GCATGCGGGCACTCAGCCAACTGGAAAGGCCGACGAAAAGGCAGAATGACCAAGTCGGGGATCAG
* * * * * * *
17102087 CTTGGTCCCCCCTGCGTCCTTCCGATCTTGCTGCCACAACCCTTGGTCTGATCTGATCT
455 CTCGGTCCCCCCTACGTCCTTCCGATCCTGCTGCCACAACCCTCGGTCGGATCGGAGCT
* * * * *
17102146 TAGAATGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCATTCAGGCGCTGAGCCG
1 TAGACTTGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCATGCAGGCGCTCAGCCG
* * ** *
17102211 GCTGGAGAGGCAT-AATGCCCAAG-TCGGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTTGATCT
66 ACTGGAGAGGC-TGAATGCCCAAGCT-GGGGATCAGCTCGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
17102274 CGCTGCCACAACCCTCGAA-TCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CGCTGCCACAA-CCT-GAAGTCCGACTAGGGCTTAAACATGGAATGAACTCCCTATGCCGAAGCC
* * * * * * * * **
17102338 AACCCACGAAACGGGCGTGTGGGCGCTTAGTCGGTTGGAGAGGCAAAATGC-GTAGCCGGGGAT-
192 AACCCACGAAACGGACGTGCGGGCGCTCAGCCGATCGAAAAGGCAAAATGCACAAGCCGGGGATC
* ** * *
17102401 TACCCCGGTCTCCCCTGCGTGCTAACGATCCTACTACCACAACC-TCGGTTTGATTCGATCTTAG
257 GA-CCCAATCCCCCCTGCGTGCTAACGATCCTACTACCACAACCTTCGGTCTGATTCGATCTTAG
* * **
17102465 ACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTA-TATGCCTAAGTCAACCCATGA
321 ACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC-AGTATAACTAAGTCAACCCATGA
* * ** * * *
17102529 AACGAGCATGCGGGTACTCAGTCGGCTGGAAAGGCTGATCGAAAAGGCATAAT-ACGCAAGTTGG
385 AACGAGCATGCGGGCACTCAGCCAACTGGAAAGGCCGA-CGAAAAGGCAGAATGAC-CAAGTCGG
* * * * *
17102593 GGATCAGC-CGGTCCCCCTTTATGTGCTGT-CGATCCTGCTGCCACCATCCTCGGTTCGGAT-GG
448 GGATCAGCTCGGTCCCCC-CTACGTCCT-TCCGATCCTGCTGCCACAACCCTCGG-TCGGATCGG
*
17102655 GGCT
510 AGCT
* * * **
17102659 TAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGATGCTCAGC
1 TAGACTTGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCATGCAGGCGCTCAGC
17102722 TAGCTGGAAA
Statistics
Matches: 471, Mismatches: 92, Indels: 25
0.80 0.16 0.04
Matches are distributed among these distances:
512 150 0.32
513 229 0.49
514 90 0.19
515 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (513 bp):
TAGACTTGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCATGCAGGCGCTCAGCCG
ACTGGAGAGGCTGAATGCCCAAGCTGGGGATCAGCTCGGTCCCCCTCTACGTGCTGCCGATCCCG
CTGCCACAACCTGAAGTCCGACTAGGGCTTAAACATGGAATGAACTCCCTATGCCGAAGCCAACC
CACGAAACGGACGTGCGGGCGCTCAGCCGATCGAAAAGGCAAAATGCACAAGCCGGGGATCGACC
CAATCCCCCCTGCGTGCTAACGATCCTACTACCACAACCTTCGGTCTGATTCGATCTTAGACTGA
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCAGTATAACTAAGTCAACCCATGAAACGAG
CATGCGGGCACTCAGCCAACTGGAAAGGCCGACGAAAAGGCAGAATGACCAAGTCGGGGATCAGC
TCGGTCCCCCCTACGTCCTTCCGATCCTGCTGCCACAACCCTCGGTCGGATCGGAGCT
Found at i:17103034 original size:26 final size:26
Alignment explanation
Indices: 17103005--17103057 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17102995 CCGGTCTGAT
17103005 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17103031 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17103057 C
1 C
17103058 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17103162 original size:185 final size:185
Alignment explanation
Indices: 17102843--17103210 Score: 468
Period size: 185 Copynumber: 2.0 Consensus size: 185
17102833 ACTGAGAATG
* * * *
17102843 ATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCACTC
* * ** *
17102908 AGCCGATCGAAGAGGCAGAATTTGTAAGTCGGGGACCGGTTAGGTCCACCCCTGCGTGCTGTCGA
66 AGCCGATCGAAGAGGCAAAATGTGTAAGTCGGGGACCGGCCAGGTCCACCCCTGCATGCTGTCGA
* * * * * * *
17102973 TCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
131 TCCTGCTATCGCAACCCTCGATCCAGTCTAATCCTAGACTGAGAATGAACTCCGT
** **
17103028 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCACTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCACTC
* * * ** * *
17103093 AGCCGATCGGAGAGGCAAAATGTGTAAGTCGGGGATCGGCCCGGTGCC-CCTTTGCATTCTGTTG
66 AGCCGATCGAAGAGGCAAAATGTGTAAGTCGGGGACCGGCCAGGT-CCACCCCTGCATGCTGTCG
*
17103157 ATCCTGCTATCGCAACCCTCGATCCAGTCTAATCCTAGATTGAGAATGAACTCC
130 ATCCTGCTATCGCAACCCTCGATCCAGTCTAATCCTAGACTGAGAATGAACTCC
17103211 CTAAGCCGAT
Statistics
Matches: 154, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
185 152 0.99
186 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (185 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCACTC
AGCCGATCGAAGAGGCAAAATGTGTAAGTCGGGGACCGGCCAGGTCCACCCCTGCATGCTGTCGA
TCCTGCTATCGCAACCCTCGATCCAGTCTAATCCTAGACTGAGAATGAACTCCGT
Found at i:17103645 original size:170 final size:171
Alignment explanation
Indices: 17103277--17103715 Score: 467
Period size: 170 Copynumber: 2.6 Consensus size: 171
17103267 AACTCTGTAT
* * ** *
17103277 GCTTAGATTGGGGATGAACTCCGTATGCCTAAG-TCAACCCATGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACAAGCAAGCGGGTGCTCA
* * * * * ** *
17103341 GCCGACCGGAGAGGCATAATGCTCAAGCCTGGGATTAGCCCGGTCCCTCTCTGTGTGCAGCCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCTGGGATCAGCCCGGTCCCTCCCTACGTGCAGCCAAT
* * *
17103406 CCCGCTGTCGGTCCTGCTGCCACAGCCCTCGATCCGGCTAGG
130 CCCGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTAGA
* * *
17103448 GCTTAGACAT-GGAAGGAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCAAGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCAAGCGGGTGCTCA
* * * * * *
17103512 ACCGGCCGGGGAGGTAGAATGCGCAAGTC-GAGGATCGGCCCGGTCCC-CCCTACGTGCTGCCAA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCTG-GGATCAGCCCGGTCCCTCCCTACGTGCAGCCAA
* * *
17103575 TCCTGCTGTTGGTCCTGCTACCGCAACCCTCGATCCGGTCT-GA
129 TCCCGCTGTCGGTCCTGCTACCACAACCCTCGATCCGG-CTAGA
* * * *
17103618 TCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACAAGCATA-CGGGTGCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCA-AGCGGGTGCTCA
* * * *
17103682 GCTGGTCAGAGAGGCAGAATGCGCAAGCCGGGGA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCTGGGA
17103716 CCGACCCGAT
Statistics
Matches: 219, Mismatches: 42, Indels: 15
0.79 0.15 0.05
Matches are distributed among these distances:
169 1 0.00
170 124 0.57
171 92 0.42
172 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCAAGCGGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCTGGGATCAGCCCGGTCCCTCCCTACGTGCAGCCAATC
CCGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTAGA
Found at i:17103880 original size:159 final size:159
Alignment explanation
Indices: 17103587--17103888 Score: 372
Period size: 159 Copynumber: 1.9 Consensus size: 159
17103577 CTGCTGTTGG
* ** **
17103587 TCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
1 TCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTAAGAATGAACTACGTATGCCTAAGC
** * * * ** * * *
17103652 CAACCCACGAAACAAGCATACGGGTGCTCAGCTGGTCAGAGAGGCAGAATGCGCAAGCCGGGGAC
66 CAACCCACGAAACAAGCATACAAGCGCTAAGCCGACCAGAAAGGCAGAATGCACAAGCCAGGGAC
17103717 CGACCCGATCCCCGCTTGTGTGCTATCGA
131 CGACCCGATCCCCGCTTGTGTGCTATCGA
* *
17103746 TCCTGCTACCGCAACCCTC-AGTCCGATCCAATCTTAGACTAAGAATGAACTCCGTCTGCCTAAG
1 TCCTGCTACCGCAACCCTCGA-TCCGATCCAATCTTAGACTAAGAATGAACTACGTATGCCTAAG
* * * * * *
17103810 TCAACCCACGAAACGAGCGTGCAAGCGCTAAGCCGACCGGAAAGGCATAATGCACAAGCCAGGGA
65 CCAACCCACGAAACAAGCATACAAGCGCTAAGCCGACCAGAAAGGCAGAATGCACAAGCCAGGGA
*
17103875 TCGACCCGATCCCC
130 CCGACCCGATCCCC
17103889 CTCTGCGTGC
Statistics
Matches: 118, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
158 1 0.01
159 117 0.99
ACGTcount: A:0.27, C:0.32, G:0.24, T:0.17
Consensus pattern (159 bp):
TCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTAAGAATGAACTACGTATGCCTAAGC
CAACCCACGAAACAAGCATACAAGCGCTAAGCCGACCAGAAAGGCAGAATGCACAAGCCAGGGAC
CGACCCGATCCCCGCTTGTGTGCTATCGA
Found at i:17103899 original size:159 final size:158
Alignment explanation
Indices: 17103578--17103982 Score: 368
Period size: 159 Copynumber: 2.5 Consensus size: 158
17103568 CTGCCAATCC
* * * ** **
17103578 TGCTGTTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTACGTA
1 TGCTGCTGATCCTGCTACCGCAACCCTCG-TCCGATCCAATCTTAGACTAAGAATGAACTACGTA
** * * * ** * *
17103643 TGCCTAAGCCAACCCACGAAACAAGCATACGGGTGCTCAGCTGGTCAGAGAGGCAGAATGCGCAA
65 TGCCTAAGCCAACCCACGAAACAAGCATACAAGCGCTAAGCCGACCAGAAAGGCAGAATGCACAA
* *
17103708 GCCGGGGACCGACCCGATCCCCGCTTGTG
130 GCCAGGGACCGACCCGATCCCCGCTTGCG
* *
17103737 TGCT-ATCGATCCTGCTACCGCAACCCTCAGTCCGATCCAATCTTAGACTAAGAATGAACTCCGT
1 TGCTGCT-GATCCTGCTACCGCAACCCTC-GTCCGATCCAATCTTAGACTAAGAATGAACTACGT
* * * * * * *
17103801 CTGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTAAGCCGACCGGAAAGGCATAATGCACA
64 ATGCCTAAGCCAACCCACGAAACAAGCATACAAGCGCTAAGCCGACCAGAAAGGCAGAATGCACA
*
17103866 AGCCAGGGATCGACCCGATCCCC-CTCTGCG
129 AGCCAGGGACCGACCCGATCCCCGCT-TGCG
* ** **** * * * *
17103896 TGCTGCTGGTCCTGCTACCATAACCCTCGGTCCGA-CTGGGGCTTAGAC-ATGGAATGAAATCCC
1 TGCTGCTGATCCTGCTACCGCAACCCTC-GTCCGATC-CAATCTTAGACTA-AGAATGAACTACG
17103959 TATGCCTAAGCCAACCCACGAAAC
63 TATGCCTAAGCCAACCCACGAAAC
17103983 GGGCGTGTGG
Statistics
Matches: 199, Mismatches: 41, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
158 5 0.03
159 192 0.96
160 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (158 bp):
TGCTGCTGATCCTGCTACCGCAACCCTCGTCCGATCCAATCTTAGACTAAGAATGAACTACGTAT
GCCTAAGCCAACCCACGAAACAAGCATACAAGCGCTAAGCCGACCAGAAAGGCAGAATGCACAAG
CCAGGGACCGACCCGATCCCCGCTTGCG
Found at i:17104133 original size:26 final size:26
Alignment explanation
Indices: 17104095--17104147 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17104085 CAAGTCTGAT
17104095 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17104121 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17104147 C
1 C
17104148 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17104420 original size:158 final size:158
Alignment explanation
Indices: 17104120--17104462 Score: 386
Period size: 158 Copynumber: 2.2 Consensus size: 158
17104110 AACTCCGTAT
* *
17104120 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGAGGCGCTCAGT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGAGGCGCTCAGC
* * * *
17104185 CGGCCTAAAAGGCAGAATGCGCAAGACGGGGATTAGCCCGATCCCCCTCTATGTACTACCGGTCC
66 CGGCCGAAAAGGCAGAATGCGCAAGACGGGGATCAGCCCGATCCCCCTCTACGTACTACCGATCC
17104250 CGCTGCCACAACCCTCGGTCCGACTGGG
131 CGCTGCCACAACCCTCGGTCCGACTGGG
** * * *
17104278 GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCACGAAATAGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTG-AGGCGCTCAG
* * * * * * ** *
17104343 CCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT-TACGTGTTATCGATC
65 CCGGCCGAAAAGGCAGAATGCGCAAGACGGGGATCAGCCCGATCCCCCTCTACGTACTACCGATC
** * * * ***
17104407 TTGCTGTCGCAACCCTCGGTCC-AATCCAA
130 CCGCTGCCACAACCCTCGGTCCGACT-GGG
*
17104436 TCTTAGAC-TGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
17104463 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 31, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 19 0.12
158 84 0.55
159 49 0.32
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGAGGCGCTCAGC
CGGCCGAAAAGGCAGAATGCGCAAGACGGGGATCAGCCCGATCCCCCTCTACGTACTACCGATCC
CGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:17104471 original size:25 final size:26
Alignment explanation
Indices: 17104437--17104488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17104427 CCAATCCAAT
17104437 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17104462 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17104488 C
1 C
17104489 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17104528 original size:342 final size:333
Alignment explanation
Indices: 17103790--17104859 Score: 1080
Period size: 342 Copynumber: 3.1 Consensus size: 333
17103780 TAGACTAAGA
* * * * * **
17103790 ATGAACTCCGTCTGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTAAGCCGACCGGAAAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCTAAAAGG
* * ** * * * *
17103855 CATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCTGGTCCTGCTACCATAAC
66 CAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTATGT-CTGCCGGTCCCGCTGCCACAAC
* *
17103920 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGG
130 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGG
* * * * * * *
17103985 GCGTGTGGGCGCTCAACCGG-CCAGAGAGGTAGAATGCACAAGCCGAGGATCGACCTGATCCACC
195 GCGTGCGGGCGCTCAGCCGGTCGA-AGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCC-CC
*
17104049 CGGCATGCTGCTGATCCTGCTGTCGTAACCCTCGAT-CAAGTCTGATCTTAGACTGGGAATGAAC
258 C--C-TG-T-C-GAT-CTGCTGTCGCAACCCTCGATCCAA-TCTGATCTTAGACT-GGAATGAAC
*
17104113 TCCGTATGCTTAGACAT-GGA
314 TCCGTATGCTTAGAC-TGGGG
* * *
17104133 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTG-AGGCGCTCAGTCGGCCTAAAAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCTAAAAGG
* * * *
17104197 CAGAATGCGCAAGACGGGGAT-TAGCCCGATCCCCCTCTATGTACTACCGGTCCCGCTGCCACAA
66 CAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCCTCTATGT-CTGCCGGTCCCGCTGCCACAA
** *
17104261 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCACGAAATA
129 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG
*
17104326 GGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC
194 GGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
* **
17104391 TTACGTGTTATCGATCTTGCTGTCGCAACCCTCGGTCCAATCCAATCTTAGACTGGAATGAACTC
259 ---C-TG---TCGATC-TGCTGTCGCAACCCTCGATCCAATCTGATCTTAGACTGGAATGAACTC
17104456 CGTATGCTTAGACTGGGG
316 CGTATGCTTAGACTGGGG
* * * * *
17104474 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGATCAGTCGGCCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGT----C-----GG
* * * * * *
17104539 CCGGTCGAAGAGGCAGAATGTGTAAGCCAGGGATCGACTCGATCCTCCTCTGCATG-CTGTCGGT
57 CC--T--AAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCT--ATGTCTGCCGGT
* * * **
17104603 CCCGTTGCCACAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGAACTCCCTATGCCTAAGCC
116 CCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
** * * * *
17104668 AACCCACGAAATGGGCGTGCGGATGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATC
181 AACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATC
** * * *
17104733 GGCCCGATCCCCCCTG-CG---TGCTACCACAACCCTTGATCCAGTCTGATCTTAGACTGAGAAT
246 GGCCCGATCCCCCCTGTCGATCTGCTGTCGCAACCCTCGATCCAATCTGATCTTAGACTG-GAAT
* *
17104794 GAACTCTGTATACTTAGACTGGGG
310 GAACTCCGTATGCTTAGACTGGGG
* *
17104818 ATGAACTCCGTATCCCTAAGTCAACCCACGAAATGAGCGTGC
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
17104860 GGGCACTACC
Statistics
Matches: 611, Mismatches: 90, Indels: 51
0.81 0.12 0.07
Matches are distributed among these distances:
340 1 0.00
341 67 0.11
342 220 0.36
343 73 0.12
344 67 0.11
346 1 0.00
347 2 0.00
351 6 0.01
352 1 0.00
353 1 0.00
355 168 0.27
356 1 0.00
357 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (333 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCTAAAAGG
CAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTATGTCTGCCGGTCCCGCTGCCACAACC
CTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGG
CGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCT
GTCGATCTGCTGTCGCAACCCTCGATCCAATCTGATCTTAGACTGGAATGAACTCCGTATGCTTA
GACTGGGG
Found at i:17104809 original size:26 final size:26
Alignment explanation
Indices: 17104780--17104830 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17104770 CCAGTCTGAT
*
17104780 CTTAGACTGAGAATGAACTCTGTATA
1 CTTAGACTGAGAATGAACTCCGTATA
* *
17104806 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
17104831 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATA
Found at i:17105082 original size:185 final size:183
Alignment explanation
Indices: 17104772--17105360 Score: 625
Period size: 185 Copynumber: 3.2 Consensus size: 183
17104762 CCCTTGATCC
* * * * * * *
17104772 AGTCTGATCTTAGACTGAGAATGAACTCTGTATACTTAGAC-TGGGGATGAACTCCGTATCCCTA
1 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCTGTATGCCTA
* * * * * * **
17104836 AGTCAACCCACGAAATGAGCGTGCGG-GCACTACCCCAACCGAAGAGATAGAAT-TAGCAAGCCG
65 AGCCAACCCATGAAATGAGCGTGCGGTGCTC-A-GCCGATCGAAGAGGCAGAATGT-GCAAGCCG
* * * * * *
17104899 AGGATCGACCCAATCCCCCCCTACGTGCTGCCGATCCTACTGCAGCAACCCTTGGTCT
127 GGGATCGACCCGATCCCTCCCTGCGTGCTACCGATCCTACTGC-GCAACCCTCGGTCT
* *
17104957 TGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATCGAATGAACTCTGTATGCCTAA
1 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAA
* * *
17105022 ACCTACCCGTGAAATGAGCGTGCAGGTGCTCAGCCGATCGAAGAGGCAGAATGTGCAAGCCGGGG
66 GCCAACCCATGAAATGAGCGTGC-GGTGCTCAGCCGATCGAAGAGGCAGAATGTGCAAGCCGGGG
* * * *
17105087 ATCGGCCTGGTCCCTTCCC-GCGTGCTACCGATCCTACTGCCGTAACCCTCGGTCT
130 ATCGACCCGATCCC-TCCCTGCGTGCTACCGATCCTACTG-CGCAACCCTCGGTCT
* *
17105142 AGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAACT-TCGTATGCCTA
1 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCT-GTATGCCTA
* * *
17105206 AGCCAACCCATGAAATGAGCGTGCGGTCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGG
65 AGCCAACCCATGAAATGAGCGTGCGGT-GCTCAGCCGATCGAAGAGGCAGAATGTGCAAGCCGGG
* * *** * *
17105271 GATCGACTCGATCCCTACCTGCGTGCTTTTGATCCTACTATCGCAACCGTCGGTCT
129 GATCGACCCGATCCCTCCCTGCGTGCTACCGATCCTACT-GCGCAACCCTCGGTCT
* *
17105327 -GATCTGATCATAGACT-GGAATGAACTCCGTATGC
1 AG-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
17105361 CTAAGTTAAC
Statistics
Matches: 338, Mismatches: 55, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
184 25 0.07
185 301 0.89
186 9 0.03
187 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (183 bp):
AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAA
GCCAACCCATGAAATGAGCGTGCGGTGCTCAGCCGATCGAAGAGGCAGAATGTGCAAGCCGGGGA
TCGACCCGATCCCTCCCTGCGTGCTACCGATCCTACTGCGCAACCCTCGGTCT
Found at i:17105663 original size:158 final size:154
Alignment explanation
Indices: 17105185--17105676 Score: 475
Period size: 158 Copynumber: 3.1 Consensus size: 154
17105175 GCTTAGACAT
* * * *
17105185 GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGTCGCTCAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGGTCGGAG
* * *
17105250 AGGCAGAATGCGCAAGTCGGGGATCGACTCGATCCCTACCTGCGTGCTTTTGATCCTACTATCGC
66 A-GCAGAATGCGCAAGCCGGGGATCGACCCGATCCC--CCTGCGTGC-TGTGATCCTACTATCGC
* * * *
17105315 AACCGTCGGTCTGATCTGATCATAGACT-
127 AACCCTCGGTCCGGTCTGATCTTAGA-TG
** * * * *
17105343 GGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGTGTGCAGGCACTGAGACGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGGTCGGAG
* * ** * *
17105408 AGCAGAATGCGCATGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTACCACA
66 AGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCC-CTGCGTGCTGT-GATCCTACTATCGCA
* * ** **
17105473 ACCCTCGATCCCGTAGGGGCTTAGATG
128 ACCCTCGGTCCGGTCTGATCTTAGATG
* * *
17105500 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCCGGTCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGGTCGGA
* * * * * *
17105565 GAGACAAAATGCGTAAGCCGGGGATTGACCC-AGTCCCCCATGCGTACTGCTGATCTTACTGTCG
65 GAG-CAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCCC-TGCGTGCTG-TGATCCTACTATCG
*
17105629 CAACCCTCGGTCCGGTCTGATCTTGGATTG
126 CAACCCTCGGTCCGGTCTGATCTTAGA-TG
* *
17105659 GGAATGAAGTCCATATGC
1 GGAATGAACTCCGTATGC
17105677 TTAGACTGAG
Statistics
Matches: 265, Mismatches: 59, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.02
157 62 0.23
158 172 0.65
159 27 0.10
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (154 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGGTCGGAG
AGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTGCGTGCTGTGATCCTACTATCGCAACC
CTCGGTCCGGTCTGATCTTAGATG
Found at i:17106950 original size:26 final size:26
Alignment explanation
Indices: 17106911--17106963 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17106901 CCAGTCCGAT
*
17106911 CTTAGACTATGAATGAACTTCGTATG
1 CTTAGACTATGAATGAACTCCGTATG
17106937 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTAT-GAATGAACTCCGTATG
17106963 C
1 C
17106964 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTATGAATGAACTCCGTATG
Found at i:17107955 original size:26 final size:26
Alignment explanation
Indices: 17107917--17107995 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
17107907 TTGGTCTGAT
17107917 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17107943 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17107969 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17107995 C
1 C
17107996 CTAAGCCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 51 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17108473 original size:26 final size:26
Alignment explanation
Indices: 17108444--17108496 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17108434 CCGGTCCAAT
17108444 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17108470 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17108496 C
1 C
17108497 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17108550 original size:13 final size:13
Alignment explanation
Indices: 17108532--17108559 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17108522 GCGACGCTCA
17108532 GCCGATCGGAGAG
1 GCCGATCGGAGAG
17108545 GCCGATCGGAGAG
1 GCCGATCGGAGAG
17108558 GC
1 GC
17108560 ATAATGCGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.25, G:0.46, T:0.07
Consensus pattern (13 bp):
GCCGATCGGAGAG
Found at i:17109333 original size:26 final size:26
Alignment explanation
Indices: 17109297--17109352 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
17109287 CCGATTTGAT
* *
17109297 CTTAGATTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATAAACTACGTATG
* *
17109323 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTACGTATG
17109349 CTTA
1 CTTA
17109353 AGTTAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTACGTATG
Found at i:17110362 original size:26 final size:26
Alignment explanation
Indices: 17110321--17110373 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17110311 CTGGTCTGAT
17110321 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
17110347 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17110373 C
1 C
17110374 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17110914 original size:26 final size:26
Alignment explanation
Indices: 17110876--17110925 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17110866 GTCCAATCTG
17110876 AGATTGGGAATGAACTCCGTATGCTT
1 AGATTGGGAATGAACTCCGTATGCTT
*
17110902 AGATTGGGGATGAACTCCGTATGC
1 AGATTGGGAATGAACTCCGTATGC
17110926 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
AGATTGGGAATGAACTCCGTATGCTT
Found at i:17118816 original size:26 final size:26
Alignment explanation
Indices: 17118787--17118839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17118777 GTTGGCTTAG
*
17118787 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
17118813 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17118839 G
1 G
17118840 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17121049 original size:158 final size:159
Alignment explanation
Indices: 17120684--17121053 Score: 383
Period size: 158 Copynumber: 2.3 Consensus size: 159
17120674 GAGCCCTCGC
* ** * *
17120684 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCACCAGTCGGACC
* * * * *
17120749 GAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGATTGGGTCGATCCCTAGCTTGCGTAT
66 GAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGATAGGCTCGATCCCGAGCTTGCGCAT
* * *
17120814 TATGCCTCTCCGGCCAGCTCAGTGCCCAT
131 TATGCCTCTCCGACCAGCTAAGCGCCCAT
* ** * *
17120843 ACGCTCG-TTCATGGGTTGACTTAGGTGTACAGAGTTCA-TTCACAGTCTAAG-ATCAGATCGGA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCA-TGTCTAAGCACCAG-TCGGA
* * * * ** * *
17120905 TCGAGGGTTTTGGTAGCAGGATCGATAGCACTTAG-GGGGGATCAGGCT-GGTCCTCGA-CTTGT
64 CCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGAT-AGGCTCGATCC-CGAGCTTGC
* * * * *
17120967 GCATTCTGCCTTTTCGACCGGCTAAGCGCCCGT
127 GCATTATGCCTCTCCGACCAGCTAAGCGCCCAT
17121000 ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCA
17121054 TACGAAGTTC
Statistics
Matches: 169, Mismatches: 35, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
157 52 0.31
158 106 0.63
159 11 0.07
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (159 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCACCAGTCGGACC
GAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGATAGGCTCGATCCCGAGCTTGCGCAT
TATGCCTCTCCGACCAGCTAAGCGCCCAT
Found at i:17121290 original size:197 final size:194
Alignment explanation
Indices: 17120995--17121443 Score: 585
Period size: 197 Copynumber: 2.3 Consensus size: 194
17120985 CGGCTAAGCG
* * *
17120995 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCATACGAA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAA
* * * * *
17121060 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGACCAGTAGCAAGATCG
66 GTTCATTCCCAATCTAAGATCGAACCAGACCGA-GGTTGCGACAGCAGGACCAGTAGCAAGATCA
* * * * *
17121125 ACAGCACGTAAGGAGGGATCGGGCTGGTTCTCAG-CTTGCACATTCTGTCTCTCCGGCTGACTGA
130 ACAGCACG-AAGGAGGGATCGGGC-CGATCCCAGACTTGCACATTCTGCCTCTCCAGC-GACTGA
17121189 GCA
192 GCA
* *
17121192 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAA
* * * *
17121257 GTTCATTCCCAATCTTAGATCGAATCAGACCGAGGTTGCGACAGTAGGACCAGTAGCAGGATCAA
66 GTTCATTCCCAATCTAAGATCGAACCAGACCGAGGTTGCGACAGCAGGACCAGTAGCAAGATCAA
* * * * * ** **
17121322 CAGCACGCAGGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCATCGGTTGAGTG
131 CAGCACGAAGGAGGGATCGGGCCGATCCCAGACTTGCACATTCTGCCTCTCCAGCGACTGAGCA
* *
17121386 CCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
17121444 CCCAGTCGGA
Statistics
Matches: 220, Mismatches: 31, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
194 65 0.30
195 32 0.15
196 35 0.16
197 88 0.40
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (194 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAA
GTTCATTCCCAATCTAAGATCGAACCAGACCGAGGTTGCGACAGCAGGACCAGTAGCAAGATCAA
CAGCACGAAGGAGGGATCGGGCCGATCCCAGACTTGCACATTCTGCCTCTCCAGCGACTGAGCA
Found at i:17121603 original size:26 final size:26
Alignment explanation
Indices: 17121573--17121625 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17121563 GTTGACTTAG
* *
17121573 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
17121599 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17121625 G
1 G
17121626 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17122707 original size:26 final size:26
Alignment explanation
Indices: 17122671--17122723 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17122661 GTTGACTTAG
17122671 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17122697 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17122723 G
1 G
17122724 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17122948 original size:343 final size:342
Alignment explanation
Indices: 17122308--17123037 Score: 908
Period size: 343 Copynumber: 2.1 Consensus size: 342
17122298 GTCCGCACGT
*
17122308 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCC
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
*
17122373 CAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCAAACAGGAGGACCGGG
66 CAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCAAACAGGAGGACCGGG
* * * *
17122438 CCGATCCTCGGCTTACGCATTCTACCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCATGGG
131 CCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCATGGG
* *
17122503 TTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCGGACCGAGGATTGTGGTAGCA
196 TTGGCTTAGACATAGGGAGTTCATTCCATATCTAAGCCCCAGTCGGACCGAGGATTGTGGCAGCA
* * * * ** * * * *
17122568 GGATCGACAGCACGTAGAGGGGGACCAGTTCGATCCCT-GACTTGCGCATTATGCCTTTTCGGCT
261 GGATCGACAGCAAGCAAAAGGGGACCAGGCCGATCCCTAG-CTTGCGCATTATGCCTCTCCGACC
* * **
17122632 GGCTCAGTGCTTGAACAC
325 AGCTCAGCGCCCGAACAC
*
17122650 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
* * * * * * * **
17122715 CAGTCTAAGATCAGATCGGACCTAGGGTTGCGACAGTAGGATTGGCAGCACGCAGGAGGGACCGG
66 CAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCAAACAGGA-GGACCGG
* * * * **
17122780 GTCGATCCCCGGCTTATGCATTGTGCCTCTCCGACCGGCTGAGCGCCCAG-ACACCCATTTTTTG
130 GCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCC-GCACACCCATTTCATG
* * * * *
17122844 GGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCTAGT-GGCACTGTGGGTTGTGGCA
194 GGTTGGCTTAGACATAGGGAGTTCATTCCATATCTAAGCCCCAGTCGG-ACCGAGGATTGTGGCA
* * * * *
17122908 GCGGGATTGGCAGCAAGCAAAAGGGGACCGGGCCGATCCCTAGCTTGCTCATTATGCCTCTCCGA
258 GCAGGATCGACAGCAAGCAAAAGGGGACCAGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGA
* **
17122973 CCAGCTCAGCGCCCGTACGT
323 CCAGCTCAGCGCCCGAACAC
* * * *
17122993 TCATTTAGTGGGTTGACTGAGGCATACGGAGTTCATTCCAAGTCT
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
17123038 TAGATCGGAC
Statistics
Matches: 329, Mismatches: 55, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
342 112 0.34
343 215 0.65
344 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (342 bp):
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCAAACAGGAGGACCGGG
CCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCATGGG
TTGGCTTAGACATAGGGAGTTCATTCCATATCTAAGCCCCAGTCGGACCGAGGATTGTGGCAGCA
GGATCGACAGCAAGCAAAAGGGGACCAGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGACCA
GCTCAGCGCCCGAACAC
Found at i:17123209 original size:26 final size:26
Alignment explanation
Indices: 17123172--17123224 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17123162 GTTGGCTTAG
17123172 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
17123198 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17123224 G
1 G
17123225 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17124440 original size:26 final size:26
Alignment explanation
Indices: 17124410--17124462 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17124400 GTTGACTTAG
17124410 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17124436 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17124462 G
1 G
17124463 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17124943 original size:26 final size:26
Alignment explanation
Indices: 17124913--17124965 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17124903 GTTGACTTAG
* *
17124913 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGGTCATTCCC-AGTCTAA
17124939 GCATACGAAGGTCATTCCCAGTCTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
17124965 G
1 G
17124966 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGGTCATTCCCAGTCTAA
Found at i:17125247 original size:159 final size:159
Alignment explanation
Indices: 17125072--17125442 Score: 394
Period size: 158 Copynumber: 2.3 Consensus size: 159
17125062 GAGCGCTTGC
* * ** * *
17125072 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATC-GAA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCAG-A
* * * * * *
17125135 CCGAGGGTTGTGGTAGCGGGACCGACAGCATGCAGAGAGGGACTGGGCTGATCC-CTGACTTACG
65 CCGAGAGTTGTGGTAGCAGAACCGACAGCACGCA-AGAGGGACTGGGCCGATCCTCAG-CTTACG
* * *
17125199 CATTATGCCTCTTA-GGTCGGCTCAGCGCCCGT
128 CATTATACCT-TTATGGCCGGCTAAGCGCCCGT
* * *
17125231 ACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCAGA
** * * * * * *
17125294 TTGAGAGTTGTGGTAGTAGAATCGACAGCACGTAAGGGGGATTGGGCCGATCCTCAGTTTACGCA
65 CCGAGAGTTGTGGTAGCAGAACCGACAGCACGCAAGAGGGACTGGGCCGATCCTCAGCTTACGCA
* *
17125359 TTCTACCTTTATGGCCGGCTAAGTGCCCGT
130 TTATACCTTTATGGCCGGCTAAGCGCCCGT
*
17125389 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTTTAAGCA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
17125443 TACGGAGTTC
Statistics
Matches: 174, Mismatches: 31, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
157 6 0.03
158 91 0.52
159 73 0.42
160 4 0.02
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.27
Consensus pattern (159 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGAC
CGAGAGTTGTGGTAGCAGAACCGACAGCACGCAAGAGGGACTGGGCCGATCCTCAGCTTACGCAT
TATACCTTTATGGCCGGCTAAGCGCCCGT
Found at i:17125466 original size:26 final size:26
Alignment explanation
Indices: 17125414--17125466 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17125404 GTTGGCTTAG
*
17125414 GCATACAGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
17125440 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
17125466 G
1 G
17125467 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17125824 original size:26 final size:26
Alignment explanation
Indices: 17125794--17125846 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17125784 GTTGACTTAG
17125794 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17125820 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17125846 G
1 G
17125847 ATCAAGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17126164 original size:26 final size:26
Alignment explanation
Indices: 17126134--17126186 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17126124 GTTGGCTTAG
17126134 GCATACGGAATTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
*
17126160 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
17126186 G
1 G
17126187 ATTTTCAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:17133623 original size:26 final size:26
Alignment explanation
Indices: 17133586--17133635 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17133576 GTTGATTTAG
*
17133586 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
17133612 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
17133636 CAGATTGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17134170 original size:26 final size:26
Alignment explanation
Indices: 17134140--17134192 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17134130 GTTGACTTAG
17134140 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17134166 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17134192 G
1 G
17134193 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17134519 original size:26 final size:26
Alignment explanation
Indices: 17134483--17134533 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17134473 TTGGCTTAGG
17134483 CATACGGAGTTCATTC-CATGTCTAAA
1 CATACGGAGTTCATTCTCA-GTCTAAA
17134509 CATACGGAGTTCATTCTCAGTCTAA
1 CATACGGAGTTCATTCTCAGTCTAA
17134534 GAGTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCTCAGTCTAAA
Found at i:17135219 original size:26 final size:26
Alignment explanation
Indices: 17135189--17135244 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17135179 TGGGTTAACT
*
17135189 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
17135215 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
17135241 TAAG
1 TAAG
17135245 ATCGAATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:17135715 original size:26 final size:26
Alignment explanation
Indices: 17135666--17135718 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17135656 GTTGGCTTAG
****
17135666 GCATACAGAGTTCATTTTGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17135692 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17135718 G
1 G
17135719 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17136076 original size:26 final size:26
Alignment explanation
Indices: 17136046--17136098 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17136036 GTTGACTTAG
*
17136046 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17136072 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17136098 G
1 G
17136099 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17136576 original size:26 final size:26
Alignment explanation
Indices: 17136547--17136599 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17136537 GTTGGCTTAG
17136547 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17136573 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17136599 G
1 G
17136600 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17136964 original size:26 final size:26
Alignment explanation
Indices: 17136928--17136980 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17136918 GTTGACTTAG
17136928 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17136954 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17136980 G
1 G
17136981 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17137263 original size:882 final size:880
Alignment explanation
Indices: 17135453--17137380 Score: 2305
Period size: 881 Copynumber: 2.2 Consensus size: 880
17135443 ACACAAAGGG
* * * * * *
17135453 TTATGCCTCTTCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGACATACAGAG
1 TTATGCCTCTTCGACCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * * * * *
17135518 TTCATTCCTAGTCTAAAATTGGACCAGACTGAGGGTTGCAGTAGCAAGATCG--ATAACACATAG
66 TTCATTCCCAGTCTAAGATCGGACC-GACTGAGGGTTGCGGTAGCAGGATCGACATAACATA-AG
* * * **
17135581 GGGGCATCGGGCCAGTCCCCGACTTGCGCATTCTACCTCTTCGGTCAGCTGAGCGCCCGCACGCT
129 GGGG-ATCGAGCCGGTCCCTGACTTGCGCATTCTACCTCTTCGACCAGCTGAGCGCCCGCACGCT
***
17135646 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTTGTGTCTAAGCATACAGAGTTCATTCCC
193 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
** * * * * * *
17135711 AGTCTAAGATCAGACTGGATCGAGGGTTGTAGCAGTAGGACCTACAGCAGGATCGGCAGCACATA
258 AGTCTAAGATCAGACCAGATCGAAGGTTGAAGCAGCAGGACCTACAGCAGCATCGACAGCACACA
* * *
17135776 GAGGGGGACCGGGTTGATCCTCGACTTGCGCATTCTACCTCTCTGGCCAGTTGAGCACCCGTACA
323 GAGGGGAACCGGGTTGATCCTCGACTTGCACATTCTACCTCTCTGGCCAGTTGAGCACCCGCACA
* * * *
17135841 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTGATTCCGTGTCTAAGCCCCAGTCGGACCGAG
388 CTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCCAGTCGGACCGAG
** * * * * * * *
17135906 GGTTGTGGTAGCAGGACTGGCAGCAAGATCAACAGCACGTAGTGGAGGATCGAGCTGATCCCCGG
453 GGTTACGGCAGCAGGACCGGCAACAAGATCAACAGCACGCAGAGGAGGATCGAGCCGATCCCCGA
* * **
17135971 CTTGCACATAATGCCTCTCCGACCGACCTCTCCGATCGGCTGAGCGTTGCACACTCGTTTCATGG
518 CTTGCACATAATGCCTCTCCGACCGACCTCTCCGACCGACTGAGCGCCGCACACTCGTTTCATGG
* *
17136036 GTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
583 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * * * * * *
17136101 TGGATCGGATCGAGGGTTGCGGCAGTAGGATCGGTAGCATGCAGGGGGGACCGAGTCGATCCCCG
648 CGGATCGGACCGAGGGTTGCAACAGCAAGATCGGCAGCACGCAGGGGGGACCGAGCCAATCCCCG
* * * ** ** *
17136166 GTTTACGCATTCTGCCTCTCTGGCCGGTTGAGCACCCGCGTGCCCATTTCGTGGGTTGGCTTAAC
713 GCTTACCCATTCTGCCTCTCAGGCCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAAC
*
17136231 CATAGAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGCAGTGGGACCGACAG
778 CATAGAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGCAGTGAGACCGACAG
*** *
17136296 CACGCGGAGAAGGATCAGGTCGATCCCCGGCTTGCGCA
843 CACAAAGAGAAGGACCAGGTCGATCCCCGGCTTGCGCA
* * * * * *
17136334 TTATGCCTCTCCGACCGGCTCAGCACCC-ACACGTTTGTTTTATGGGTTGACTTAGGCGTACGGA
1 TTATGCCTCTTCGACCGGCTCAGCGCCCGA-ACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * *
17136398 GTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGATGCGGTAGTAGGATCGACATAACGTAAG
65 GTTCATTCCCAGTCTAAGATCGGACC-GACTGAGGGTTGCGGTAGCAGGATCGACATAACATAAG
* * * * * * * * *
17136463 AGGGACCGAGCCGGTCCCTGACTTACGCATTCTGCCTCTTCGACCGGTTGAGTGCTCGTACGCTC
129 GGGGATCGAGCCGGTCCCTGACTTGCGCATTCTACCTCTTCGACCAGCTGAGCGCCCGCACGCTC
* * *
17136528 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
194 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCA
* *
17136593 GTCTAAGATCAGACCAGATTGAAGGTT-AAGACAGCAGGACC-AGCAGCAGCATCGACAGCACGC
259 GTCTAAGATCAGACCAGATCGAAGGTTGAAG-CAGCAGGACCTA-CAGCAGCATCGACAGCACAC
* * * *
17136656 A-AGGGGTAATCGGGTTGATCC-CTGGCTTGCACATTCTGCCTCTCTGG-TAGATTGAGC-CCTC
322 AGAGGGG-AACCGGGTTGATCCTC-GACTTGCACATTCTACCTCTCTGGCCAG-TTGAGCACC-C
* * * *
17136717 GCACGCTCATTTCGTGGGTTAGCTTAGGCATGCGGAGTTCATCCCATGTCTAAGCCCCAGTTGGA
383 GCACACTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCCAGTCGGA
** * ** *
17136782 TTGAGGGTTACGGCAGCAGGACCGGTAACGGGATCGACAGCACGCAGA-GAGGGATCGAGCCGAT
448 CCGAGGGTTACGGCAGCAGGACCGGCAACAAGATCAACAGCACGCAGAGGA-GGATCGAGCCGAT
** * * * * * * * *
17136846 CCCCGACTTGTGCATTATGCCTTTTCGACTGGCCTTTCCGACCGACTGAGTGCCCGCACGCTCGT
512 CCCCGACTTGCACATAATGCCTCTCCGACCGACCTCTCCGACCGACTGAGCG-CCGCACACTCGT
*
17136911 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
576 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* *
17136976 CTAAGATCGGA-CTGGACCGAGGGTTGCAACAGCAAGATCGGCAGCACGTAGGGGGGACCGGGCC
641 CTAAGATCGGATC-GGACCGAGGGTTGCAACAGCAAGATCGGCAGCACGCAGGGGGGACCGAGCC
* * *
17137040 AATCCTCGGCTTGCCCATTCTGCCTCTCAGGCCGACTGAGCACCCGTACGCCCATTTCATGGGTT
705 AATCCCCGGCTTACCCATTCTGCCTCTCAGGCCGACTGAGCACCCGCACGCCCATTTCATGGGTT
** * * * *
17137105 GGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGTGAG
770 GGCTTAACCATAGAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGCAGTGAG
* *
17137170 ATCGACAGCACAAAGAG-GGGTACCAGGTCGATCCCCGGCTTGCGCA
835 ACCGACAGCACAAAGAGAAGG-ACCAGGTCGATCCCCGGCTTGCGCA
* * *
17137216 TTATGCCTCTTCGGCCGGCTCAGCGCCCGAATGCTCGTTTCATGGGTTGACTTAGGCATACGAAG
1 TTATGCCTCTTCGACCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * * * * **
17137281 TTCATTCCCATTCTAAGATCAGACCAAATCGAGGGTTGCGATAGCAGGATCGACAGCACATAAGG
66 TTCATTCCCAGTCTAAGATCGGACCGACT-GAGGGTTGCGGTAGCAGGATCGACATAACATAAGG
* *
17137346 GGCGATCGAGCCGGTCCGTGACTTGCACATTCTAC
130 GG-GATCGAGCCGGTCCCTGACTTGCGCATTCTAC
17137381 TTCTCTGGTC
Statistics
Matches: 871, Mismatches: 160, Indels: 30
0.82 0.15 0.03
Matches are distributed among these distances:
880 15 0.02
881 440 0.51
882 382 0.44
883 34 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (880 bp):
TTATGCCTCTTCGACCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGACTGAGGGTTGCGGTAGCAGGATCGACATAACATAAGGG
GGATCGAGCCGGTCCCTGACTTGCGCATTCTACCTCTTCGACCAGCTGAGCGCCCGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
CTAAGATCAGACCAGATCGAAGGTTGAAGCAGCAGGACCTACAGCAGCATCGACAGCACACAGAG
GGGAACCGGGTTGATCCTCGACTTGCACATTCTACCTCTCTGGCCAGTTGAGCACCCGCACACTC
ATTTCATGGGTTAGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCCAGTCGGACCGAGGGT
TACGGCAGCAGGACCGGCAACAAGATCAACAGCACGCAGAGGAGGATCGAGCCGATCCCCGACTT
GCACATAATGCCTCTCCGACCGACCTCTCCGACCGACTGAGCGCCGCACACTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ATCGGACCGAGGGTTGCAACAGCAAGATCGGCAGCACGCAGGGGGGACCGAGCCAATCCCCGGCT
TACCCATTCTGCCTCTCAGGCCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAACCAT
AGAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGCAGTGAGACCGACAGCAC
AAAGAGAAGGACCAGGTCGATCCCCGGCTTGCGCA
Found at i:17137583 original size:26 final size:26
Alignment explanation
Indices: 17137553--17137605 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17137543 GTTGGCTTAG
*
17137553 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACGAAGTTCATT-CATAGTCTAA
17137579 GCATACGAAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATTCATAGTCTAA
17137605 G
1 G
17137606 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCATAGTCTAA
Found at i:17140325 original size:26 final size:26
Alignment explanation
Indices: 17140295--17140347 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17140285 GTTGGCTTAG
17140295 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17140321 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17140347 G
1 G
17140348 ATCAGACTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17140562 original size:344 final size:341
Alignment explanation
Indices: 17139943--17140666 Score: 823
Period size: 344 Copynumber: 2.1 Consensus size: 341
17139933 TCATTTCGTA
* *
17139943 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCATTCTAAGAT
1 GGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGAT
** * *
17140008 TGGATCAGATCGAGGGTTGCAACAGTAAGATCGACAACACGTAAGGGGGACCGAGCCGATCCCCG
65 CAGATCAGACCGAGGGTTACAACAGTAAGATCGACAACACGTAAGGGGGACCGAGCCGATCCCCG
** * *
17140073 GCTTGTGCATTCTACCTCTTCGACCGGCTGAGCGCCCGTACGTCTATTTCGTGGGTTGGCTTAGG
130 GCTTGTGCATTCTACCTCTTCGACCGGCTGAGCGCCCCAACGCCCATTTCGTGGGTTGGCTTAGG
* * * *
17140138 CATAAAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGGTAG
195 CATAAAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGCAGGACCAGCAG
* * * * *
17140203 TACATAGAAGGGGATCGGG-CTAATCCCCGTCTTACACATTCTGCCTTTTAGGCCGACTGAGCGC
260 CACACAGAAGGGGATCGGGTC-AATCCCCGGCTTACACATTATGCCTTTTAGACCGACTGAGCGC
*
17140267 CT-CACGCTTGTTTCATG
324 CTGCACGCTCGTTTCATG
*
17140284 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACGGAGTTCATT-CCAGTCTAAGA
* * * * * ** * * *
17140349 TCAGA-CTTGACCGAGGGTTACGACAGTAGGATC-AGCAGCATG-CCGGGTGGATCGGGTCGATC
64 TCAGATC-AGACCGAGGGTTACAACAGTAAGATCGA-CAACACGTAAGGG-GGACCGAGCCGATC
* * *
17140411 CTCGGCTTGTGCATTCTA-CTC-TCTGGCCGGTTGAGCGCCCACCAACGCCCATTTCGTGGGTTG
126 CCCGGCTTGTGCATTCTACCTCTTC-GACCGGCTGAGCG-CC-CCAACGCCCATTTCGTGGGTTG
** * *
17140474 GCTTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAGG
188 GC-TTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGCAGG
* * * * *** * * *
17140539 ACCAGCAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGTGCATTATGCCTTTTCGATCGGC
252 ACCAGCAGCACACAGAAGGGGATCGGGTCAATCCCCGGCTTACACATTATGCCTTTTAGACCGAC
* * *
17140604 TTAGCGCTTGCACGCTCGTTTCGTG
317 TGAGCGCCTGCACGCTCGTTTCATG
*
17140629 GGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
17140667 ATTGGACCGG
Statistics
Matches: 318, Mismatches: 53, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
340 5 0.02
341 66 0.21
342 69 0.22
343 20 0.06
344 109 0.34
345 46 0.14
346 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (341 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATC
AGATCAGACCGAGGGTTACAACAGTAAGATCGACAACACGTAAGGGGGACCGAGCCGATCCCCGG
CTTGTGCATTCTACCTCTTCGACCGGCTGAGCGCCCCAACGCCCATTTCGTGGGTTGGCTTAGGC
ATAAAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGCAGGACCAGCAGC
ACACAGAAGGGGATCGGGTCAATCCCCGGCTTACACATTATGCCTTTTAGACCGACTGAGCGCCT
GCACGCTCGTTTCATG
Found at i:17140684 original size:159 final size:159
Alignment explanation
Indices: 17140515--17140866 Score: 381
Period size: 159 Copynumber: 2.2 Consensus size: 159
17140505 AAGCCCCAGT
* ** *
17140515 CGGACCGAGGGTTATGGTAGCAGGACCAGCAGCACGCAGAG-GGGGATCGGGTCGATCCCTGGCT
1 CGGACTGAGGGTTGCGGTAGCAGGACCAGCAGCACACA-AGCGGGGATCGGGTCGATCCCTGGCT
** * * * * **
17140579 TGTGCATTATGCCT-TTTCGA-TCGGCTTAGCGCTTGCACGCTCGTTTCGTGGGTTGACTTAGGC
65 TGCACATTATGCCTCTCT-GACT-AGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
17140642 AGACGGAGTTCATTCCCAGTCTAAGATTGGAC
128 AGACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * *
17140674 CGGACTGAGGGTTGCGGCAGCAGGATC-GATAGCACATAAGCGGGGATCGGGTCGGTCCCTGGCT
1 CGGACTGAGGGTTGCGGTAGCAGGACCAG-CAGCACACAAGCGGGGATCGGGTCGATCCCTGGCT
* * * * * *
17140738 TGCACATTCTGCCTCTCTGACTAGCTGAGCACCCGTATGCTTGTTTCGTGGGTTGGCTTAGGCAT
65 TGCACATTATGCCTCTCTGACTAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAG
* *
17140803 ACGTAGTTCATTCCCAGTCTAAGATCGGAT
130 ACGGAGTTCATTCCCAGTCTAAGATCGGAC
*
17140833 CGGA-TCGAGGGTTGCGGTAGCAGGACCAACAGCA
1 CGGACT-GAGGGTTGCGGTAGCAGGACCAGCAGCA
17140867 GGATTGGCAG
Statistics
Matches: 157, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
158 4 0.03
159 150 0.96
160 3 0.02
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.24
Consensus pattern (159 bp):
CGGACTGAGGGTTGCGGTAGCAGGACCAGCAGCACACAAGCGGGGATCGGGTCGATCCCTGGCTT
GCACATTATGCCTCTCTGACTAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAGA
CGGAGTTCATTCCCAGTCTAAGATCGGAC
Found at i:17141416 original size:26 final size:26
Alignment explanation
Indices: 17141386--17141438 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17141376 GTTGGCTTAG
17141386 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17141412 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17141438 G
1 G
17141439 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17141607 original size:26 final size:26
Alignment explanation
Indices: 17141571--17141623 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17141561 GTTGGCTTAG
17141571 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17141597 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17141623 G
1 G
17141624 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17141981 original size:26 final size:26
Alignment explanation
Indices: 17141951--17142003 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17141941 GTTGACTTAG
17141951 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17141977 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17142003 G
1 G
17142004 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17142508 original size:26 final size:26
Alignment explanation
Indices: 17142465--17142515 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17142455 TGACTAAGTT
* *
17142465 ATACTGAGTTCATCCTCAGTCTAAGC
1 ATACAGAGTCCATCCTCAGTCTAAGC
*
17142491 ATACAGAGTCCATTCTCAGTCTAAG
1 ATACAGAGTCCATCCTCAGTCTAAG
17142516 ATCGAACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTCCATCCTCAGTCTAAGC
Found at i:17143259 original size:26 final size:26
Alignment explanation
Indices: 17143222--17143274 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17143212 GTTGACTTAG
*
17143222 GCATACGAAGTTGATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17143248 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17143274 G
1 G
17143275 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17143442 original size:26 final size:26
Alignment explanation
Indices: 17143406--17143458 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17143396 GTTGGCTTAG
*
17143406 GCATAGGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
17143432 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
17143458 G
1 G
17143459 ATCACATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:17143457 original size:184 final size:191
Alignment explanation
Indices: 17143148--17143825 Score: 658
Period size: 196 Copynumber: 3.5 Consensus size: 191
17143138 AACCACACTT
* * *
17143148 TCGATCCCCGGCTTGCGCATCCTGCCTCTGT-GGTAGGTTGAGCGTCCGCACGCTCGTTTTC-TG
1 TCGATCCCCGGCTTGCGCATTCTACCTCT-TCGGTAGGTTGAGCGCCCGCACGCTCG-TTTCGTG
* * * *
17143211 GGTTGACTTAGGCATACGAAGTTGATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
64 GGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** * *
17143275 ATCGGATCAGACCGA-AG-GT-T-GC-G-A-CAGCAGGATCGACAGCACGCCGGGGGGATCGGG
128 ATCACATCAGACCGAGAGTGTGTAGCAGCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAG
* * * *
17143332 TCGATCCCCGGCTTGCGCATTCTACCTCTTCGGTTGGTTGTGCGCCCACACGCCCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTACCTCTTCGGTAGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
17143397 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * **
17143462 ACATCAGATCGAGGGTTGTGGTAGCAGGACCAGCAGCAGGATCGGTAGCACGCAGGGGGGATCGA
131 ACATCAGACCGAGAG-TGT-GTAGCA-G--CAGCAGCAGGATCGACAGCACGCAGGGGGGATCGA
17143527 G
191 G
* ** * * ** *
17143528 CCGATCCCCAACTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCCCGTACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTACCTCTTCGGTAGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
17143593 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCATACAGAGTTCATTTCCAGT-TGAAGAT
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGAT
** * * * * * ** **
17143657 TGCACCGGATCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGTAGCACATAGGGGGGATCG
130 CACATCAGACCGAGAG-TG-TGTAGCA-G--CAGCAGCAGGATCGACAGCACGCAGGGGGGATCG
*
17143722 GG
190 AG
** * * * * * * *
17143724 TCGATCCTTGACTTGCGCATTCTGCCACTCCGGTCGGTTGAGTGCCCGCACGCTCGTTTCATGGG
1 TCGATCCCCGGCTTGCGCATTCTACCTCTTCGGTAGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
17143789 TTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGC
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17143826 CCTAGCCGGA
Statistics
Matches: 418, Mismatches: 59, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
183 8 0.02
184 115 0.28
185 1 0.00
187 2 0.00
189 1 0.00
190 2 0.00
192 1 0.00
195 2 0.00
196 286 0.68
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (191 bp):
TCGATCCCCGGCTTGCGCATTCTACCTCTTCGGTAGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
ACATCAGACCGAGAGTGTGTAGCAGCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAG
Found at i:17143641 original size:196 final size:196
Alignment explanation
Indices: 17143299--17143825 Score: 725
Period size: 196 Copynumber: 2.7 Consensus size: 196
17143289 AAGGTTGCGA
** * * *
17143299 CAGCAGGATCGACAGCACGCCGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCG
1 CAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCG
* * * * *
17143364 GTTGGTTGTGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 GTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * *
17143429 TAAGCATACGGAGTTCA-TTCTCAGTCT-AAGATCACATCAGATCGAGGGTTGTGGTAGCAGGAC
131 TAAGCATACAGAGTTCATTTC-CAGT-TGAAGATCACACCAGATCGAGGGTTGCGGTAGCAGGAC
17143492 CAG
194 CAG
* * *
17143495 CAGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCAACTTGCGCATTCTACCTCTCCG
1 CAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCG
** *
17143560 GTCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 GTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* ** *
17143625 TAGGCATACAGAGTTCATTTCCAGTTGAAGATTGCACCGGATCGAGGGTTGCGGTAGCAGGACCA
131 TAAGCATACAGAGTTCATTTCCAGTTGAAGATCACACCAGATCGAGGGTTGCGGTAGCAGGACCA
17143690 G
196 G
** ** * *
17143691 CAGCAGGATCGGTAGCACATAGGGGGGATCGGGTCGATCCTTGACTTGCGCATTCTGCCACTCCG
1 CAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCG
* * * *
17143756 GTCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTC
66 GTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
17143821 TAAGC
131 TAAGC
17143826 CCTAGCCGGA
Statistics
Matches: 289, Mismatches: 40, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
195 1 0.00
196 285 0.99
197 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (196 bp):
CAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCG
GTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCATACAGAGTTCATTTCCAGTTGAAGATCACACCAGATCGAGGGTTGCGGTAGCAGGACCA
G
Found at i:17143999 original size:26 final size:26
Alignment explanation
Indices: 17143969--17144021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17143959 GTTGACTTAG
17143969 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17143995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17144021 G
1 G
17144022 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17144296 original size:159 final size:157
Alignment explanation
Indices: 17144081--17144496 Score: 424
Period size: 159 Copynumber: 2.6 Consensus size: 157
17144071 GGGCCGGGCT
* ** * * * * *
17144081 GATCCCCGGCTTGTGTATTTTGCCTTTCCGATCGGCTGAGCACCCACACGCCCGTTTCGTGGGTT
1 GATCCCCGACTTACGTATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * **
17144146 GGCTTAGGCGTAGGGTGTTCATTCCATGTCTAAGCCCTAG-CCAGATCGAGAGTTGTGGCAGCGG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGATCGAGAGTTGCGGCAGCAA
* * *
17144210 GACTGGCAGCACGCAGAGGGGGATCGAGCC
130 GACTGACAGCACACAGA--GGGACCGAGCC
** * * * * *
17144240 GATCTTCGGCTTACGTATTATGCCTCTCCGGTCGGCTCAGTGCCCGCACGCTCGTTTCTTGGGTT
1 GATCCCCGACTTACGTATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * ** * * *
17144305 GACTTAGGCATACGAAGTTCATTCTC-GGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAA
66 GGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCAGACCAGATCGAGAGTTGCGGCAGCAA
* *
17144369 GATTGACAGTACACAGAGGGACCGAGCC
130 GACTGACAGCACACAGAGGGACCGAGCC
* * *
17144397 GATCCCCGACTTAC-TCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGT
1 GATCCCCGACTTACGT-ATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
17144461 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17144497 ATATGGAGTT
Statistics
Matches: 206, Mismatches: 47, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
156 2 0.01
157 91 0.44
158 2 0.01
159 110 0.53
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (157 bp):
GATCCCCGACTTACGTATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGATCGAGAGTTGCGGCAGCAAG
ACTGACAGCACACAGAGGGACCGAGCC
Found at i:17144883 original size:171 final size:171
Alignment explanation
Indices: 17144584--17144891 Score: 397
Period size: 171 Copynumber: 1.8 Consensus size: 171
17144574 ACCTGACTGG
* **
17144584 TCCCCGACTTACGGATTCTGCCTCTCCAACTGGCTGAGCGCCCGTACGCTTCTTTTGTAGGTTGG
1 TCCCCGACTTACGGATTCTGCCTCTCCAACTGGCTGAGCGCCCGCACGCTTCTTTCATAGGTTGG
* *** * *
17144649 CTTTGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGCGGTAGCAGGAC
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGAACCAAGGGTGGCGGTAGCAGGAC
17144714 CAGCAGCAGGACCGACAGCATACAAGGGGAGACCGGGTCAA
131 CAGCAGCAGGACCGACAGCATACAAGGGGAGACCGGGTCAA
* * ** * *
17144755 TCCCCGGCTTACGTATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCACGC-TCGTTTCATGGGTTG
1 TCCCCGACTTACGGATTCTGCCTCTCCAACTGGCTGAGCGCCCGCACGCTTC-TTTCATAGGTTG
* * *
17144819 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCT-GAACCAAGGGTGGTGGTAGCAG
65 GCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGATCGAACCAAGGGTGGCGGTAGCAG
*
17144882 GACCGGCAGC
128 GACCAGCAGC
17144892 GGGATCGGCA
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
170 5 0.04
171 108 0.94
172 2 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (171 bp):
TCCCCGACTTACGGATTCTGCCTCTCCAACTGGCTGAGCGCCCGCACGCTTCTTTCATAGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGAACCAAGGGTGGCGGTAGCAGGAC
CAGCAGCAGGACCGACAGCATACAAGGGGAGACCGGGTCAA
Found at i:17144931 original size:171 final size:170
Alignment explanation
Indices: 17144572--17144935 Score: 387
Period size: 171 Copynumber: 2.1 Consensus size: 170
17144562 ACGCAGGGAT
* * *
17144572 GGACCTGACTGGTCCCCGACTTACGGATTCTGCCTCTCCAACTGGCTGAGCGCCCGTACGCTTCT
1 GGACCGGACTGATCCCCGACTTACGGATTCTGCCTCTCCAACTGGCTGAGCGCCCGCACGCTTCT
** * *** * *
17144637 TTTGTAGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTG
66 TTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGAACCAAGGGTGG
17144702 CGGTAGCAGGACCAGCAGCAGGACCGACAGCATACAAGGG
131 CGGTAGCAGGACCAGCAGCAGGACCGACAGCATACAAGGG
* * * * ** *
17144742 GAGACCGG-GTCAATCCCCGGCTTACGTATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCACGC-T
1 G-GACCGGACT-GATCCCCGACTTACGGATTCTGCCTCTCCAACTGGCTGAGCGCCCGCACGCTT
* * *
17144805 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCT-GAACCAAG
64 C-TTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGATCGAACCAAG
* * * * * *
17144868 GGTGGTGGTAGCAGGACCGGCAGCGGGATCGGCAGCACGTAGAA-GG
126 GGTGGCGGTAGCAGGACCAGCAGCAGGACCGACAGCA--TACAAGGG
17144914 GGACCGGACTGATCCCCGACTT
1 GGACCGGACTGATCCCCGACTT
17144936 GCACATTATA
Statistics
Matches: 156, Mismatches: 30, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
170 7 0.04
171 139 0.89
172 6 0.04
173 4 0.03
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (170 bp):
GGACCGGACTGATCCCCGACTTACGGATTCTGCCTCTCCAACTGGCTGAGCGCCCGCACGCTTCT
TTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGAACCAAGGGTGG
CGGTAGCAGGACCAGCAGCAGGACCGACAGCATACAAGGG
Found at i:17145386 original size:26 final size:26
Alignment explanation
Indices: 17145347--17145400 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
17145337 TTGGTTGAAT
*
17145347 TAGGCATACGGAGTTCA-TTCCATGTC
1 TAGGCATACAGAGTTCATTTCCA-GTC
17145373 TAGGCATACAGAGTTCATTTCCAGTC
1 TAGGCATACAGAGTTCATTTCCAGTC
17145399 TA
1 TA
17145401 AGATTGCACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTTCCAGTC
Found at i:17145751 original size:26 final size:26
Alignment explanation
Indices: 17145715--17145767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17145705 GTTTACTTAT
17145715 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17145741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17145767 G
1 G
17145768 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17145898 original size:354 final size:353
Alignment explanation
Indices: 17144716--17145926 Score: 1067
Period size: 354 Copynumber: 3.4 Consensus size: 353
17144706 AGCAGGACCA
* * *
17144716 GCAGCAGGACCGA-CAGCATACAAGGGGAGACCGGGTCAATCCCCGGCTTACGTATTCTGCCTCT
1 GCAGCAGGACCGAGCAGCACACAAGGGG-GACCGGGTCAATCCCCGACTTACGCATTCTGCCTCT
* * *
17144780 CCGG-CTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
65 CCGGTC-GACTGAGCGCCCGCACGCTCGTTTCATGGGTAGGCTTAGGCATACGGAGTTCATTCCA
* * * * * *
17144844 TGTCTAAGCCCCAGCTGAACCAAGGGTGGTGGTAGCAGGACCGGCAGCGGGATCGGCAGCACGTA
129 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACCGACAGC-GGATC-GCAGCACGCA
* * * * *
17144909 GAAGGGGACCGGACTGATCCCCGACTTGCACATTATACCTCTCCGATCAGCCTCTCTAGCCGGTT
192 GAAGGGGACCGGGCTGATCCCTGACTTGCGCATTAT-GCT-T-C--TCAG--------GCCGGCT
* * * * * ** *
17144974 AAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGTAGATTGACTTCATCCCCAGTCTAAGCAT
244 AAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAT
* * *
17145039 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGC
309 ACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGG
* * * ** * * * *
17145084 G-ACGTAGGATC-ATCAGCATGCAAGAGGGACCGGGCCGATCCCCGACTTACGCATTC-GCCTTT
1 GCA-GCAGGACCGAGCAGCACACAAGGGGGACCGGGTCAATCCCCGACTTACGCATTCTGCCTCT
* * * * * * *
17145146 CTGGCCGACTGAGCACCCACACGCTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 CCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTAGGCTTAGGCATACGGAGTTCATTCCAT
* * *
17145211 GTCTAAGCCCCAGTCGGACCGAGGGCTGTGGTAACA--A--GAC--CGG-T---AGCACGCAGAA
130 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGATCGCAGCACGCAGAA
* *** * * * * *
17145266 GGGGGCTATGCTGAT-CCTCGACTTACGCATTATGCCTCTCCGGCCGGCTCAA-TGCCTGAACGC
195 GGGGACCGGGCTGATCCCT-GACTTGCGCATTATGCTTCTCAGGCCGGCT-AAGCGCCTGCACGC
* * * * * * * *
17145329 TCATTTCGTTGGTTGAATTAGGCATACGGAGTTCAT-TCCATGTCTAGGCATACAGAGTTCATTT
258 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTC
* * *
17145393 CCAGTCTAAGATTGCACCGGATCGAGGGTTGCG
322 CCAGTCTAAGATCGAATCGGATCGAGGGTTG-G
* * * *
17145426 GTAGCAGGACCAGCAGCAGGATCGGTAGCACATATGGGGATCGGGTCAATCCCCGACTTGCGCAT
1 GCAGCAGGACC-G-AGCA-G--C---A-CACA-AGGGGGACCGGGTCAATCCCCGACTTACGCAT
* * * * * *
17145491 TCTGCCTCTTCGGTCGATTGAGTGCCCGCACGCTCATTTCGTGGGTAGGCTTAGGTATACGGAGT
56 TCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTAGGCTTAGGCATACGGAGT
* * *
17145556 TCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGAC
121 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACCGACAGC-GGATCG-C
* * * *
17145621 AGCACGCAG-AGGGAACCGGGCTAATCCCTGACTTGTGCATTATGCTTCTCAGGCCGGCTGAGCG
184 AGCACGCAGAAGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCTTCTCAGGCCGGCTAAGCG
* * *
17145685 CCTGCAGGCTCGTTTCGTGGGTTTACTTATGCATACAGAGTTCATCCCCAGTCTAAGCATACGGA
249 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGA
*
17145750 GTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTTGG
314 GTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGG-TTGG
* * * * * * * *
17145791 GCAGCAGGATCGA-CAGCACGCAGGGGGGATCGAGTCAGTCCTCGACTTACGCATTCTACCTCTC
1 GCAGCAGGACCGAGCAGCACACAAGGGGGACCGGGTCAATCCCCGACTTACGCATTCTGCCTCTC
* * * *
17145855 CGATCGACTGAGCGCCCGTACACTCGTTTCATGGGTAGGCTTAGGCATACAGAGTTCATTCCATG
66 CGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTAGGCTTAGGCATACGGAGTTCATTCCATG
17145920 TCTAAGC
131 TCTAAGC
17145927 ATACGGAGTT
Statistics
Matches: 669, Mismatches: 138, Indels: 86
0.75 0.15 0.10
Matches are distributed among these distances:
340 3 0.00
341 87 0.13
342 9 0.01
343 1 0.00
345 3 0.00
346 1 0.00
348 1 0.00
349 3 0.00
351 2 0.00
352 3 0.00
353 31 0.05
354 216 0.32
355 3 0.00
356 2 0.00
358 4 0.01
359 3 0.00
360 2 0.00
361 3 0.00
362 5 0.01
363 1 0.00
364 3 0.00
365 128 0.19
366 108 0.16
367 28 0.04
368 19 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (353 bp):
GCAGCAGGACCGAGCAGCACACAAGGGGGACCGGGTCAATCCCCGACTTACGCATTCTGCCTCTC
CGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTAGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGATCGCAGCACGCAGAAG
GGGACCGGGCTGATCCCTGACTTGCGCATTATGCTTCTCAGGCCGGCTAAGCGCCTGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGAATCGGATCGAGGGTTGG
Found at i:17145949 original size:26 final size:26
Alignment explanation
Indices: 17145899--17145951 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17145889 GTAGGCTTAG
*
17145899 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
17145925 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17145951 G
1 G
17145952 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17146589 original size:170 final size:171
Alignment explanation
Indices: 17146317--17146655 Score: 423
Period size: 170 Copynumber: 2.0 Consensus size: 171
17146307 TCAGTCCCCG
* * *
17146317 ACTTGCGCATTCTGCCTCTCTAATCGGCTGAGCACTCGCATGCTCGTTTCGTGGGTTGGCTTAGG
1 ACTTGCACATTCTGCCTCTCTAATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
****
17146382 CATACGGAGTTCATTTCCAATCTAAGATTGGACCGAACCAAGGGTTACGGCAGCAGGACCAGCAA
66 CATACGGAGTTCATTTCCAATCTAAGACCCAACCGAACCAAGGGTTACGGCAGCAGGACCAGCAA
* * *
17146447 CAGGATCGGCAGCATGCAG-GGGGGATCAGGCCGATCCCTA
131 CAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTA
* *
17146487 ACTTGCACATTCTGCCTCT-TCGATCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
1 ACTTGCACATTCTGCCTCTCT-AATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** ** *
17146551 GCATATGGAGTTCA-TTCCATGTCTAGGCCCCAACCGAACTGAGGGTTGTGGCAGCAGGACCGGC
65 GCATACGGAGTTCATTTCCA-ATCTAAGACCCAACCGAACCAAGGGTTACGGCAGCAGGACCAGC
* * *
17146615 AGCGGGATCGACAGCACGCAGAGGGGGACCAGGCTGATCCC
129 AACAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCC
17146656 CGACTCATTT
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
169 6 0.04
170 119 0.84
171 17 0.12
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (171 bp):
ACTTGCACATTCTGCCTCTCTAATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTTCCAATCTAAGACCCAACCGAACCAAGGGTTACGGCAGCAGGACCAGCAA
CAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTA
Found at i:17146717 original size:26 final size:26
Alignment explanation
Indices: 17146681--17146760 Score: 133
Period size: 26 Copynumber: 3.1 Consensus size: 26
17146671 GTTGACTTAG
17146681 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17146707 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17146733 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17146759 GC
1 GC
17146761 TCAAATCGGA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17147970 original size:159 final size:159
Alignment explanation
Indices: 17147748--17148108 Score: 370
Period size: 159 Copynumber: 2.3 Consensus size: 159
17147738 AACGCCTGTA
* * * * * * *
17147748 TCGTGAGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGACCCAGTCGGAGCTAGGGTTAT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGTCGGACCGAAGGTTAC
* ** * * *
17147813 GGCAGCGGGA-CTGACAGCACGCAGAGAGGGACCAGGCTGATCCCCTGCTTGCGCATTGTGCCTC
66 GACAGCAAGATC-GACAGCACGCAGAGAGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTC
* *
17147877 TCCAATC-GACTCAGTGCCCGCACACTCGTT
130 TCCAACCAG-CTCAGCGCCCGCACACTCGTT
* * *
17147907 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGA-TCGGATCGGACCGAAGGTT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAG-TCGGACCGAAGGTT
* * * * * * *
17147970 ACGACAGCAAGATCGACAGTACGCAGGGGGGGATCGGGCCGGTCCCCAGCTTGTGCATTCTGCCT
64 ACGACAGCAAGATCGACAGCACGCAGAGAGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCT
** * *
17148035 CTCTGACCAGCTGAGCGCCCGCACGCTCGTT
129 CTCCAACCAGCTCAGCGCCCGCACACTCGTT
** *
17148066 TTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17148109 CATACGGAGT
Statistics
Matches: 164, Mismatches: 33, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
158 5 0.03
159 154 0.94
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGTCGGACCGAAGGTTAC
GACAGCAAGATCGACAGCACGCAGAGAGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCT
CCAACCAGCTCAGCGCCCGCACACTCGTT
Found at i:17148118 original size:26 final size:26
Alignment explanation
Indices: 17148082--17148134 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17148072 GTTGGCTTAG
17148082 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17148108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17148134 G
1 G
17148135 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17148978 original size:158 final size:158
Alignment explanation
Indices: 17148486--17148978 Score: 458
Period size: 159 Copynumber: 3.1 Consensus size: 158
17148476 CCCAGTCTAA
* * * *
17148486 GCATACAAAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGCGGTAACAGGATCGATA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * * *
17148551 ACACGCA-GGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGTCTATCCGGCCGACTGAGTGC
66 GCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGC-TTTTGCCTCTTCGACCGACTGAGCGC
* **
17148615 CCGCACGC-CTATTTTGTGGGTTGGCTTAG
130 CCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * * ** * * * **
17148644 GCATAGGGAGTTCATT-CTATGTTTAAGCCCCAG-TCGGACCGAGGGTTGGGGCAGTGGGATCGA
1 GCATACGAAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
** * * * ** *
17148707 CAGCACGCAGAAGGGGATCGGGTCGATCCCCAGCTTGCG-TATTATGCCTC-TCCAGCCGGTTTA
64 CAGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCT-TT-TGCCTCTTCGA-CCGACTGA
* * *
17148770 GCACCCGAACGCTCGTTTCATGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
17148803 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAAGATCAACA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * *
17148868 GCACGTAGGGGGGGATCGGGCCGATCCCCGGCTTGTGCTTTTACCTCTTCGATCGACTGAGCGCC
66 GCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCTTTTGCCTCTTCGACCGACTGAGCGCC
17148933 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
17148961 GCATACGAAGTTCATTCC
1 GCATACGAAGTTCATTCC
17148979 ATGTCTCAGC
Statistics
Matches: 258, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 111 0.43
159 139 0.54
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCTTTTGCCTCTTCGACCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17149117 original size:184 final size:184
Alignment explanation
Indices: 17148803--17149168 Score: 511
Period size: 184 Copynumber: 2.0 Consensus size: 184
17148793 GTTGACTTAG
* ** *
17148803 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACGGCAGCAAGATCAACA
* * * * * * * *
17148868 GCACGTAGGGGGGGATCGGGCCGATCCCCGGCTTGTGCTTTTACCTCTTCGATCGACTGAGCGCC
66 GCACGTAGGGGGGGACCGAGCCGATCCCCAGCCTGCGCTTCTACCTCTTCGACCGACTAAGCGCC
17148933 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTCA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTCA
* * * *
17148987 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTACGGCAGTAAGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACGGCAGCAAGATCAACA
* * *
17149052 GCATGTA-GGGGGGACCGAGCCGATCCCCAGCCTGCGCATTCTACCTTTTCGGCC-AGCTAAGCG
66 GCACGTAGGGGGGGACCGAGCCGATCCCCAGCCTGCGC-TTCTACCTCTTCGACCGA-CTAAGCG
* *
17149115 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
17149169 AAGCCCCAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
183 26 0.16
184 133 0.84
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACGGCAGCAAGATCAACA
GCACGTAGGGGGGGACCGAGCCGATCCCCAGCCTGCGCTTCTACCTCTTCGACCGACTAAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTCA
Found at i:17149537 original size:26 final size:26
Alignment explanation
Indices: 17149501--17149553 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17149491 GTTGGCTTTG
*
17149501 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17149527 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17149553 G
1 G
17149554 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17149732 original size:26 final size:26
Alignment explanation
Indices: 17149696--17149748 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17149686 GTTGACTTAG
*
17149696 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
* *
17149722 GCATACGGAGTTCATATCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
17149748 G
1 G
17149749 ATCTAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:17150337 original size:352 final size:340
Alignment explanation
Indices: 17149605--17150416 Score: 893
Period size: 352 Copynumber: 2.3 Consensus size: 340
17149595 GGATCAGTAG
*
17149605 CACAGAAGGGGACCGGG-CAGATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCTCAC
1 CACAG-AGGGGACCGGGCCA-ATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCACAC
* * * * * *
17149669 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGT
64 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGT
* * **
17149733 TCATATCCAGTCTAAGATCTAATCAGACCGAGGGTTACGGCAGCAAGATCGACAGCATGCAAGGG
128 TCATATCCAATCTAAGATCGAATCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACACAAGGG
* *
17149798 GCCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCCCACATGCCTGTTT
193 GCCAGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACCGACTGAGCGCCCACACGCCTGTTT
* *
17149863 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTG
258 CATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTG
* *
17149928 GCAACGGGACTGGTAGCA
323 GCAACGGGACCGGCAGCA
* *** * * * * * * *
17149946 CGCAGAGGGGGACCAACCCGATCCCCAGCCTATGCATTCTACCTCTTCGATCGGCTGAGCGCCCG
1 CACAGA-GGGGACCGGGCCAATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCACACG
* *
17150011 CACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTGTAAGCATACAGAGTTC
65 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
* * *
17150076 AT-TCCCAATCTACGATCGGA-CTGGACCGAGGGTTACGATGCAGGACCAACAGCAGGATCGACA
130 ATAT-CCAATCTAAGATCGAATC-AGACCGAGGGTTACG--GCA-G-----CA--A-GATCGACA
* * * * * * *
17150139 GCACACAGGGGGGACCGGGCC-ATCCTCGGCTTGCACATT-TGCTTCTCCGGCC-AGTTGAGCGC
182 GCACACA-AGGGG-CCAGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACCGA-CTGAGCGC
* * *
17150201 CCGCACG-CTCGTTTCATGGGTTAGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCTAGTC
244 CCACACGCCT-GTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
*
17150265 GAACCGAGGGTTGTGGCAATGGGACCGGCAGCA
308 GAACCGAGGGTTGTGGCAACGGGACCGGCAGCA
* * * * *
17150298 CACAGAGGAGGACCGGGCCAATCCCTAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACTCG
1 CACAGAGG-GGACCGGGCCAATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCACACG
* * * *
17150363 CACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGC
65 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17150417 CCCAGTCGGA
Statistics
Matches: 387, Mismatches: 63, Indels: 31
0.80 0.13 0.06
Matches are distributed among these distances:
340 6 0.02
341 131 0.34
342 1 0.00
343 3 0.01
344 1 0.00
349 2 0.01
351 6 0.02
352 211 0.55
353 20 0.05
354 6 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (340 bp):
CACAGAGGGGACCGGGCCAATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCACACGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
TATCCAATCTAAGATCGAATCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACACAAGGGGCC
AGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACCGACTGAGCGCCCACACGCCTGTTTCAT
GGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTGGCA
ACGGGACCGGCAGCA
Found at i:17150396 original size:159 final size:156
Alignment explanation
Indices: 17150137--17150441 Score: 398
Period size: 159 Copynumber: 1.9 Consensus size: 156
17150127 GCAGGATCGA
* * * * *
17150137 CAGCACACAGGGGGGACCGGGCCATCCTCGGCTTGCACATTTGCTTCTCCGGCCAGTTGAGCGCC
1 CAGCACACAGGGAGGACCGGGCCATCCTCAGCTTGCACATTTGCCTCTCCGGCCAGCTGAGCACC
* * * *
17150202 CGCACGCTCGTTTCATGGGTTAGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGA
66 CGCACACCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA
17150267 ACCGAGGGTTGTGGCAATGGGACCGG
131 ACCGAGGGTTGTGGCAATGGGACCGG
* *
17150293 CAGCACACAGAGGAGGACCGGGCCAATCC-CTAGCTTGCGCATTCTGCCTCTCCGGTC-GACTGA
1 CAGCACACAG-GGAGGACCGGGCC-ATCCTC-AGCTTGCACATT-TGCCTCTCCGGCCAG-CTGA
* * *
17150356 GCACTCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCA
61 GCACCCGCACACCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * *
17150421 GTCGGACTGATGGTTGTGGCA
126 GTCGAACCGAGGGTTGTGGCA
17150442 GCAGTACCAG
Statistics
Matches: 127, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
156 10 0.08
157 13 0.10
158 15 0.12
159 89 0.70
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (156 bp):
CAGCACACAGGGAGGACCGGGCCATCCTCAGCTTGCACATTTGCCTCTCCGGCCAGCTGAGCACC
CGCACACCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA
ACCGAGGGTTGTGGCAATGGGACCGG
Found at i:17150589 original size:26 final size:26
Alignment explanation
Indices: 17150560--17150612 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17150550 GTTGACTTAG
17150560 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
17150586 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17150612 G
1 G
17150613 ATAGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17150904 original size:513 final size:505
Alignment explanation
Indices: 17149807--17150929 Score: 1218
Period size: 513 Copynumber: 2.2 Consensus size: 505
17149797 GGCCAGGCCG
* * * * *
17149807 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCCCACATGCCTGTTTCATGGGTTG
1 ATCCCCGACTTGCGCATTCTGCCTCTCCG-TCGACTGAGCACCCACACGCC-GTTTCATGGGTTG
* *
17149872 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACGGGA
64 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACAGGA
** *
17149937 CTGGTAGCACGCAGAGGGGGACCAACCCGATCCCCAGCCTATGCATTCTACCTCTTCGATCGGCT
129 CCAGTAGCACGCAGAGGGGGACCAACCCGATCCCCAGCCTACGCATTCTACCTCTTCGATCGGCT
* * * *
17150002 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTGTAAGCAT
194 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
* *
17150067 ACAGAGTTCATTCCCAATCTACGATCGGACTGGACCGAGGGTTACGATGCAGGACCAACAGCAGG
259 ACAGAGTTCATTCCCAATCTAAGATAGGACTGGACCGAGGGTT---ATGCAGGA-CAACAGCAGG
* * * * * *
17150132 ATCGACAGCACACAGGGGGGACCGGGCCATCCTCGGCTTGCACATTTGCTTCTCCGGCCAGTTGA
320 ATCGACAGCACACAGGGGGGACCAGGCCATCCCCAGCTTGCACATTTACCTCTCCGGCCAGCTGA
* * * *
17150197 GCGCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCTA
385 GCGCCCGCACGCCCGTTTCATAGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
** * *
17150262 GTCGAACCGAGGGTTGTGGCAATGGGACCGGCAGCACACAGAGGAGGACCGGGCCA
450 ACCGAACCGAGGGTTGTGGCAACGGGACCGGCAGCACACAGAGGAGGACCGAGCCA
*
17150318 AT-CCCTAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACTCGCACAC-CCGTTTCATGGGT
1 ATCCCCGA-CTTGCGCATTCTGCCTCTCC-GTCGACTGAGCAC-C-CACACGCCGTTTCATGGGT
* * * * *
17150381 TGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGTCGGACTGATGGTTGTGGCAGCAG
62 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACAG
* * * * * ** *
17150446 TACCAGTAGTATGTAG-GGGGGACCAGCCCGATCCCTGGCTTACGCATTCTACCTCTTCAACCGA
127 GACCAGTAGCACGCAGAGGGGGACCAACCCGATCCCCAGCCTACGCATTCTACCTCTT----CG-
* *
17150510 CCTCTCCAGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
187 -------A-TCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* *
17150575 CTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGA-TCGGACCGAGGG-T-TGC-
244 -TCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATAGGACT-GGACCGAGGGTTATGCA
* * * *
17150635 TG-C-A-A-CAGGATC-AGTAGCACGCAGGGGGGACTAGGCCGATCCCCAGCTTGCGA-ATTCTA
307 GGACAACAGCAGGATCGA-CAGCACACAGGGGGGACCAGGCC-ATCCCCAGCTTGC-ACATT-TA
* * * *
17150694 CCTCTTCGGTC-GACTGAGCGCCCGCACGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCA
368 CCTCTCCGGCCAG-CTGAGCGCCCGCACGCCCGTTTCATAGGTTAGCTTAGGCATAGGGAGTTCA
* * * ** *
17150758 TT-CATGTCTAAGCCCCAACCAGAA-TGAGGGTTGTGGCAACGGGATCTGCAGCACGTAGAGGGG
432 TTCCATGTCTAAGCCCCAACC-GAACCGAGGGTTGTGGCAACGGGACCGGCAGCACACAGAGGAG
17150821 GACCGAGCCA
496 GACCGAGCCA
* * *
17150831 ATCCCCGACTTGCACATTCTGCCTCTCCTGTCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTG
1 ATCCCCGACTTGCGCATTCTGCCTCTCC-GTCGACTGAGCACCCACACGC-CGTTTCATGGGTTG
* * *
17150896 GCTTAGGCATACGGAATTCATTCCATGTATAAGC
64 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17150930 ATACGGAGTT
Statistics
Matches: 513, Mismatches: 71, Indels: 54
0.80 0.11 0.08
Matches are distributed among these distances:
510 39 0.08
511 116 0.23
512 32 0.06
513 152 0.30
514 67 0.13
515 1 0.00
517 1 0.00
518 3 0.01
522 3 0.01
523 95 0.19
524 4 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (505 bp):
ATCCCCGACTTGCGCATTCTGCCTCTCCGTCGACTGAGCACCCACACGCCGTTTCATGGGTTGGC
TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACAGGACC
AGTAGCACGCAGAGGGGGACCAACCCGATCCCCAGCCTACGCATTCTACCTCTTCGATCGGCTGA
GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
AGAGTTCATTCCCAATCTAAGATAGGACTGGACCGAGGGTTATGCAGGACAACAGCAGGATCGAC
AGCACACAGGGGGGACCAGGCCATCCCCAGCTTGCACATTTACCTCTCCGGCCAGCTGAGCGCCC
GCACGCCCGTTTCATAGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAA
CCGAGGGTTGTGGCAACGGGACCGGCAGCACACAGAGGAGGACCGAGCCA
Found at i:17151659 original size:26 final size:26
Alignment explanation
Indices: 17151623--17151675 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17151613 GTTGACTTAG
17151623 GCATACGGAGTTCATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* *
17151649 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
17151675 G
1 G
17151676 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:17152138 original size:26 final size:26
Alignment explanation
Indices: 17152099--17152151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17152089 GTTGGCTTAG
* *
17152099 GCATACGGAGTTCATTCC-ACGTCTAA
1 GCATACGCAATTCATTCCTA-GTCTAA
17152125 GCATACGCAATTCATTCCTAGTCTAA
1 GCATACGCAATTCATTCCTAGTCTAA
17152151 G
1 G
17152152 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGCAATTCATTCCTAGTCTAA
Found at i:17152798 original size:158 final size:158
Alignment explanation
Indices: 17152492--17152993 Score: 415
Period size: 158 Copynumber: 3.2 Consensus size: 158
17152482 CTCAGTCTAA
* * ** * ** * * * *
17152492 GCATATGGAGTTCATTCCCTGTCTAAGATCGAACTGGATCGAGGGTTGTGGCAGCAAGATCGATA
1 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGATGTGGCAGCAAGATAGACA
* * * * * * * *
17152557 GCACGCAGGGGGGA-CTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCAGGGAGGATC-GAGTCGATCCCAGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGCAC
* * * * *
17152621 CCGTATGCCCATTTTGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **
17152650 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGATGTGGCAGCGGGACTAG-C
1 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGATGTGGCAGCAAGA-TAGAC
* * * **
17152714 AGCATGCAGAGGGGGATCGGGTCGATCCTC-GGCTT-CGCATTATGCCTCTTTGGAT-GGCTCAG
65 AGCACGCAG-GGAGGATCGAGTCGATCC-CAGGCTTACGCATTATGCCTCTCCGG-TCGGCTCAG
* * **
17152776 TACCCG-AGCGTTCGTTTCGTGGGTTAACTTAG
127 CACCCGCA-CGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** ** * * *
17152808 GCATACGTAGTTCATTTC-TAGTTTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAAGATTGAC
1 GCATAAGGAGTTCATTCCAT-GTCTAAGCCCCAACCAGACCGAGGGATGTGGCAGCAAGATAGAC
* * * *
17152872 AGCACGCAGGGAGGATCGAGTCGGTCCCAGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAGGGAGGATCGAGTCGATCCCAGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGCAC
17152937 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17152966 GCAGAAGGAGTTCATTCCATGTCTAAGC
1 GCATAAGGAGTTCATTCCATGTCTAAGC
17152994 ATACGAAGGT
Statistics
Matches: 271, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 25 0.09
158 218 0.80
159 25 0.09
160 2 0.01
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.25
Consensus pattern (158 bp):
GCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGATGTGGCAGCAAGATAGACA
GCACGCAGGGAGGATCGAGTCGATCCCAGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17153532 original size:26 final size:26
Alignment explanation
Indices: 17153503--17153552 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17153493 GACTTAGACA
17153503 TACGAAGTTCA-TCCCATGTCTAAGCT
1 TACGAAGTTCATTCCCA-GTCTAAGCT
17153529 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
17153553 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:17153805 original size:26 final size:26
Alignment explanation
Indices: 17153755--17153806 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17153745 TTGGTTTAGA
*
17153755 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGGCTAAG
*
17153781 CATATGGAGTTCATTCCCA-GGCTAAG
1 CATACGGAGTTCATT-CCATGGCTAAG
17153807 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGGCTAAG
Found at i:17154541 original size:159 final size:158
Alignment explanation
Indices: 17154146--17154648 Score: 462
Period size: 159 Copynumber: 3.2 Consensus size: 158
17154136 CCCCAATCAA
* * * *
17154146 GCATACGAAGTTCATTCCCA-GTCTAAGATCAAACTGGACTGAGGGTTGTGGCAACAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
** * * * * *
17154210 AGCACGCTA-GGGGGATCGGGTCGATTCCTGGCTTGCGCATTCTACCTCTCCGACC-GACTGAGT
65 AGCACGC-AGGGGGGATCGAATCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAG-CTGAGC
* * * *
17154273 GCTCGAATGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGAACGCTCATTTCATGGGTTGGCTTAG
** * ** **
17154304 GCATA-GGTAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGTGGGATCGGT
1 GCATACGG-AGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
* * * * *
17154368 AGCACGCAGAGGGGGATCGAACCGATCCCCAGCTTGCGCATTATGCCTCTCTGGCCAGCTCAGCG
65 AGCACGCAG-GGGGGATCGAATCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCG
*
17154433 CCCGAACGCTCATTTCATGGGTTGACTTAG
129 CCCGAACGCTCATTTCATGGGTTGGCTTAG
** * * **
17154463 GCATACGGAGTTCATTCCCAT-TCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
* * * * * * *
17154527 AGCACGCAAGGGGGGA-CCAGATCGGTCCTCGGTTTACGCATTCTGCCTCTCCAG-TAGGCTGAG
65 AGCACGC-AGGGGGGATCGA-ATCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCA-GCTGAG
** * *
17154590 CATCCGTACGCTCATTTCGTGGGTTGGCTTAG
127 CGCCCGAACGCTCATTTCATGGGTTGGCTTAG
*
17154622 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17154649 CATACGGAGT
Statistics
Matches: 276, Mismatches: 58, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 61 0.22
159 201 0.73
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
GCACGCAGGGGGGATCGAATCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
CGAACGCTCATTTCATGGGTTGGCTTAG
Found at i:17154658 original size:26 final size:26
Alignment explanation
Indices: 17154622--17154674 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17154612 GTTGGCTTAG
17154622 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
17154648 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17154674 G
1 G
17154675 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17155213 original size:26 final size:26
Alignment explanation
Indices: 17155177--17155226 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17155167 GGCTTAGGCA
*
17155177 TATGGAGTTCATT-CCATGTCTAAGCG
1 TATGAAGTTCATTCCCA-GTCTAAGCG
17155203 TATGAAGTTCATTCCCAGTCTAAG
1 TATGAAGTTCATTCCCAGTCTAAG
17155227 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (26 bp):
TATGAAGTTCATTCCCAGTCTAAGCG
Found at i:17156435 original size:26 final size:26
Alignment explanation
Indices: 17156383--17156435 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17156373 CCTGGCTTAG
*
17156383 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17156409 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
17156435 G
1 G
17156436 ATCAGATCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17156613 original size:26 final size:26
Alignment explanation
Indices: 17156577--17156629 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17156567 GTTGACTTAG
17156577 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17156603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17156629 G
1 G
17156630 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17156955 original size:26 final size:25
Alignment explanation
Indices: 17156919--17156970 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17156909 GTTGGCTTAG
*
17156919 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
17156945 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
17156970 G
1 G
17156971 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:17157677 original size:26 final size:26
Alignment explanation
Indices: 17157641--17157693 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17157631 GTTGACTTAG
17157641 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17157667 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17157693 G
1 G
17157694 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17158167 original size:158 final size:156
Alignment explanation
Indices: 17157667--17158168 Score: 437
Period size: 158 Copynumber: 3.2 Consensus size: 156
17157657 CCCAGTCTAA
* ** * **
17157667 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
17157732 ACACCCAGGGGGGATC-GGACCGATCC-CTGGCTTACGCATTCTGCCTCTCCGGCTGACTGACCG
66 GCACGCAAGGGGGATCGGGA-CGATCCTC-GGCTTACGCATTCTGCCTCTCCGGCTGACTGA--G
17157795 CCCGCACGC-CTGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * * ** * *
17157825 GCATAGGGAGTTAATT-CAATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAG-GATCG
** ** * * * * *
17157887 GTAGCACGCAGAGGGGGA-CCAGACTGATCCTCGGTTTCCGTATTATGCCTCTCGGGCTTG-CTC
63 ACAGCACGCA-AGGGGGATCGGGAC-GATCCTCGGCTTACGCATTCTGCCTCTCCGGC-TGACT-
* * * * *
17157950 AATGCCCACACGCTCGTTTCATGGGTTGACTTTG
124 GA-GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17157984 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
17158049 GCACGTAAGGGGGATCGGGTCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGACTGAGCACC
66 GCACGCAAGGGGGATCGGGACGATCCTCGGCTTACGCATTCTGCCTCTCCGGCTGACTGAGC-CC
*
17158114 TGCATGCTCGTTTCGTGGGTTGGCTTAG
130 -GCACGCTCGTTTCGTGGGTTGGCTTAG
17158142 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17158169 CATATGGAGT
Statistics
Matches: 266, Mismatches: 60, Indels: 36
0.73 0.17 0.10
Matches are distributed among these distances:
156 2 0.01
157 10 0.04
158 131 0.49
159 115 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAGGGGGATCGGGACGATCCTCGGCTTACGCATTCTGCCTCTCCGGCTGACTGAGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17158171 original size:26 final size:26
Alignment explanation
Indices: 17158142--17158194 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17158132 GTTGGCTTAG
17158142 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17158168 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17158194 G
1 G
17158195 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17158751 original size:26 final size:26
Alignment explanation
Indices: 17158715--17158767 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17158705 GTTGGCTTAG
17158715 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17158741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17158767 G
1 G
17158768 ATTTTGAGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17165309 original size:26 final size:26
Alignment explanation
Indices: 17165273--17165325 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17165263 GTTGACTTAG
17165273 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17165299 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17165325 G
1 G
17165326 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17165817 original size:26 final size:26
Alignment explanation
Indices: 17165767--17165819 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17165757 GTTGGCTTAG
* *
17165767 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
17165793 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
17165819 G
1 G
17165820 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:17165999 original size:26 final size:26
Alignment explanation
Indices: 17165963--17166015 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17165953 GTTGACTTAG
17165963 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17165989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17166015 G
1 G
17166016 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17166646 original size:25 final size:25
Alignment explanation
Indices: 17166612--17166662 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
17166602 GTTGACCTAG
17166612 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
* *
17166637 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
17166662 G
1 G
17166663 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:17167875 original size:26 final size:26
Alignment explanation
Indices: 17167839--17167891 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17167829 GTTGGATTAG
17167839 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
17167865 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17167891 G
1 G
17167892 ATGGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17168645 original size:503 final size:499
Alignment explanation
Indices: 17167266--17168909 Score: 1755
Period size: 503 Copynumber: 3.3 Consensus size: 499
17167256 TACCACTCGC
* * ** * * * *
17167266 TCGATCCCCGACTTACGCATCCTGCCTCTTTGGCCAGCTGAGCCCCCGCACGCTCGTTTTATGGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * *
17167331 TTGACTTAGGCATATAGAGTTCATCCCCA-GTCTAAGCATACGCAGTTCATTCCCAGTCTAAGAT
66 TTG-CTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * * * * *
17167395 CGGACCAGACCAAGGGTTG-TGATAGCAGGATGGGTAGCACGTAGGGGGGACCGAACCGATCCCC
129 TGGATCGGATCGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCAATCCCC
* * * * * *
17167459 GGCTTGCGTATTCTGCCTCTCCGACCGGCTGAG-TGCCTGCACGCCCGTTT-AGTGGGTTAGCTT
193 GACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCT-CCCGCACGCCCATTTCA-TGGGTTGGCTT
* * * * *
17167522 AGGCATAAGGAGTTCATTCTATGTCTAAGCCCCAGCGGGACCAAGGGTTGTGGCAGCAGGACCGA
256 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCAAGGGTTGTGGCAGCGGGACCGA
** ** *
17167587 CA-TTTCGTAGAGGGGGACCGATCC-AGTCCCC-AGCTTGCGCATTATGCCTCTCCGGCCGGCTC
321 CAGCAT-GTAGAGGGGGACCGGGCCGA-TCCCCGA-CTTGCGCATTATGCCTCTTCGG-CGGCTC
* * * *
17167649 AGCGCT-GCAGGCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCATTCTAAGAT-T
382 AGCGCTCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCT
*
17167712 AGACCAGATCGAGGGTTGCGGTAGCAAGATTGAAAGCA--CACAGGGGGATCGGG
447 AGACCAGATCGAGGGTTGCGGTAGCAAGA-AGAAAGCATGCA-AGGGGGATCGGG
* * * * * * *
17167765 TCGGTCCCCGGCTTACGCATTCTGCCTTTGCGACCGGCTGAGCACCCGCACGTTTGTTTCGTGGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * * *
17167830 TTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATG
66 TT-GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
17167895 GGATCGGATCGAGGGTTGTGGCAAAAGTACTAGCAGCAGGATCGGCAGCACGCAGGGGGGTACCG
130 GGATCGGATCGAGGG-T-T-------G--C-AGCAGCAGGATCGGCAGCACGCAGGGGGG-ACCG
* * * * * *
17167960 -GTCAATCCCC-ATCTTGTGCATTCTGCCTCTGC-AGCCGGTTGAGCGCCCGAACGCCCATTTCG
182 AGCCAATCCCCGA-CTTGTGCATTCTGCCTCTCCGA-CCGGCTGAGCTCCCGCACGCCCATTTCA
17168022 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA-CCGGACCAAGGGTTGTGG
245 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAAGCCGGACCAAGGGTTGTGG
* * * * * * *
17168086 TAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCTTGTGCATTATGCCTCTTC
309 CAGCGGGACCGACAGCATGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTC
* * * * * *
17168151 GGCAGGCTTAGCACTCACACGCTCATTTCATGGGTTGACTTATGCGTACGAAGTTCATTCCCAGT
374 GGC-GGCTCAGCGCTCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGT
* * * *
17168216 GTAAGATCTA-ACCAGATCGAGGGTTGCGATAGTATA-AACGATAGCATGCAATGGGGGATCGGG
438 CTAAGATCTAGACCAGATCGAGGGTTGCGGTAGCA-AGAA-GAAAGCATGCAA-GGGGGATCGGG
* * * *
17168279 TCAATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCATGGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * *
17168344 TTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATT
66 TT-GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * *
17168409 GGATCGGATCGAGGGTTGCAGCAGTAGGATCTGCAGCTCGCAAGGGGGGACCGAGCCTATCCCCG
130 GGATCGGATCGAGGGTTGCAGCAGCAGGATCGGCAGCACGC-AGGGGGGACCGAGCCAATCCCCG
* *
17168474 ACTTGTGCATTCTGCCTCTTCGACCGACTGAGCTCCCGCACGCCCATTTCATGGGTTGGCTTAGG
194 ACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCTCCCGCACGCCCATTTCATGGGTTGGCTTAGG
* * *
17168539 CATAGGGAGTTCATTCCATGTCTAAGCCCAAGCTGGACCAAGGGTTGTGGCAACGGGACCGGCAG
259 CATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCAAGGGTTGTGGCAGCGGGACCGACAG
* * * *
17168604 CATGTAGAGGTGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTTTTCGATCGGCTCAGCGCC
324 CATGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCG-GCGGCTCAGCGCT
* *
17168669 CGCACCCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCA
388 CGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCTAGACCA
* * **
17168733 GA-CTGAGGGTTGCGGCAGCAAGATAGACAA-CATGC-AGGGGGACCAAG
453 GATC-GAGGGTTGCGGTAGCAAGA-AGA-AAGCATGCAAGGGGGATCGGG
* * * * * * *
17168780 CCGATCCCCGACTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* *
17168845 TTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATT
66 -TTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
17168910 TCGAGCCACA
Statistics
Matches: 950, Mismatches: 151, Indels: 86
0.80 0.13 0.07
Matches are distributed among these distances:
498 3 0.00
499 114 0.12
500 2 0.00
501 119 0.13
502 34 0.04
503 256 0.27
504 5 0.01
505 1 0.00
508 1 0.00
510 2 0.00
511 180 0.19
512 87 0.09
513 5 0.01
514 141 0.15
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (499 bp):
TCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
TTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
GATCGGATCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCAATCCCCGAC
TTGTGCATTCTGCCTCTCCGACCGGCTGAGCTCCCGCACGCCCATTTCATGGGTTGGCTTAGGCA
TAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCAAGGGTTGTGGCAGCGGGACCGACAGCA
TGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCGGCTCAGCGCTCGC
ACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCTAGACCAGAT
CGAGGGTTGCGGTAGCAAGAAGAAAGCATGCAAGGGGGATCGGG
Found at i:17168671 original size:159 final size:157
Alignment explanation
Indices: 17168453--17168881 Score: 459
Period size: 159 Copynumber: 2.7 Consensus size: 157
17168443 AGCTCGCAAG
* * * * *
17168453 GGGGGACCGAGCCTATCCCCGACTTGTGCATTCTGCCTCTTCGACCGACTGAGCTCCCGCACGCC
1 GGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCC
* * * **
17168518 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCA-AGCTGGACCAAGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGA-CCAGACCAAGG
* ** * * * *
17168582 GTTGTGGCAACGGGACCGGCAGCATGTA
130 GTTGCGGCAACAAGACAGACAACATGCA
* * * *
17168610 GAGGTGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTTTTCGATCGGCTCAGCGCCCGCAC-
1 G-GG-GGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACG
* * ** **
17168674 CCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTG
64 CC-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGACCA
* *
17168738 AGGGTTGCGGCAGCAAGATAGACAACATGCA
127 AGGGTTGCGGCAACAAGACAGACAACATGCA
* * * * * *
17168769 GGGGGACCAAGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGTCCGCACGCT
1 GGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCC
* *
17168834 CGTTTCGTGGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17168882 ATACAGAGTT
Statistics
Matches: 221, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
156 3 0.01
157 90 0.41
158 7 0.03
159 117 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.23
Consensus pattern (157 bp):
GGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCC
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCAAGGG
TTGCGGCAACAAGACAGACAACATGCA
Found at i:17168905 original size:26 final size:26
Alignment explanation
Indices: 17168854--17168906 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17168844 GTTTGCTTAG
*
17168854 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
17168880 GCATACAGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
17168906 G
1 G
17168907 ATTTCGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:17170089 original size:158 final size:160
Alignment explanation
Indices: 17169699--17170116 Score: 404
Period size: 159 Copynumber: 2.6 Consensus size: 160
17169689 GGACCGGACT
* * * * * * *
17169699 GATCCCCAGCTTACGCATTCTGCCTCTCAGACCGACTGAGCGCCTGAACGCCCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGAACGCTCTTTTCATGGGTT
* * * ** *
17169764 GGCTTAGGCATA-GGAAGTTCATT-CCATGTCTAAGCCCCAGTTGGACTGAGGGTTGTGGCAGCG
66 GGCTTAGGCATACGG-AGTTCATTCCCATGTCTAAGCACCAGCTAGACTGAGGGTTGCAGCAGCA
*
17169827 GGACCAGCAGCACACAGAGGGGGACTGAGTC
130 GGACCAGCAGCACACAGAGGGGGAATGAGTC
* * * * * * * *
17169858 GATCCCCGGCTTGCGTATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTTGA-GGGT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGAACGCTC-TTTTCATGGGT
* * * *
17169922 TGACCTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGCCTAGACTGAGGGTTGCAGTAGC
65 TGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCACCAG-CTAGACTGAGGGTTGCAGCAGC
* **** *
17169985 AGGATC-G-ATTGGAC-GTAGGGGGAATCGGGTC
129 AGGACCAGCAGCACACAG-AGGGGGAAT-GAGTC
* *
17170016 GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAACGCCCGAACGCTCTTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGAACGCTCTTTTCATGGGTT
* *
17170081 GGCTTAGGCATACAGAGTTCATT-CCATGGCTAAGCA
66 GGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCA
17170117 TACAGAGTTC
Statistics
Matches: 204, Mismatches: 46, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 19 0.09
158 83 0.41
159 93 0.46
160 8 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (160 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGAACGCTCTTTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCACCAGCTAGACTGAGGGTTGCAGCAGCAG
GACCAGCAGCACACAGAGGGGGAATGAGTC
Found at i:17171131 original size:26 final size:26
Alignment explanation
Indices: 17171095--17171147 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17171085 GTTGGCTTAG
17171095 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
17171121 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
17171147 G
1 G
17171148 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:17171854 original size:26 final size:26
Alignment explanation
Indices: 17171817--17171869 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17171807 GTTGACTTAG
17171817 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
17171843 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
17171869 G
1 G
17171870 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17172365 original size:26 final size:26
Alignment explanation
Indices: 17172322--17172374 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17172312 GTTGGCTTAG
17172322 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTTATTCCCA-GTCTAA
17172348 GCATACGGAGTTCT-TTCCCAGTCTAA
1 GCATACGGAGTT-TATTCCCAGTCTAA
17172374 G
1 G
17172375 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCCAGTCTAA
Found at i:17172505 original size:196 final size:196
Alignment explanation
Indices: 17172047--17172938 Score: 897
Period size: 196 Copynumber: 4.6 Consensus size: 196
17172037 AGCACACAAA
* * * * * * * * * *
17172047 GGGGGACCGGGCCGATCCGCTACTTGCGCATTATGCCTCTCCGATTGGCTCAGCGCCC-TAACGC
1 GGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGT-ACGC
* * * * *
17172111 TCGTTTCATGGGTTAGCTTAGGCATATGGAATTCATTCCATGTTTAAGCATACAGAGTTCATTCC
65 TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
* * * * * * * *
17172176 CAATCTAAGATCAGA-CCGA-C-A--GTAGTGACAGCAGGACCGGTAACAGGATCGATAGCATGC
130 CAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGACAGCACGC
17172236 A-
195 AG
* * * *
17172237 GGGGGATCGGGTCGGTCCTCGACTTACGCATTCTGCCTTTTCGG-CTGGCTGAGCGCCCGTACGC
1 GGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCGGTC-GGCTGAGCGCCCGTACGC
* * * *
17172301 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGGAGTTCTTTCC
65 TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
** * * * * * * **
17172366 CAGTCTAAGATTGGATCGGATCAAGGGTTGTGATAGTAGGACCAGCAGTAGGATCGGTAGCACGC
130 CAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGACAGCACGC
17172431 AG
195 AG
** * * * * * **
17172433 GAAGGACCGGGTCGATCCTCGACTTACGTATTCTACCTCTTCGATCGGGTGAATGCCCGTACGCT
1 GGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGTACGCT
* *
17172498 TGTTTCATGGGTAGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
66 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
* *
17172563 AGTCTAAGATCAAATCAGACCAAGGGTTGCCG-CAGCAGGACCAGTAGCAGGATCGACAGCACGC
131 AGTCTAAGATCAGATCGGACCAAGGGTTG-CGACAGCAGGACCAGTAGCAGGATCGACAGCACGC
17172627 AGG
195 A-G
* * * * * * * * *
17172630 GGGGGATCGAGCCAATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACTCT
1 GGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGTACGCT
* * * *
17172695 TGTTTTATGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
66 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
* * * * *
17172760 AGTCTAAGATCGGATCGGACCAAGGGTTACGATAGCAGGACCAGTAGTAGGATCGACAGCACGTA
131 AGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGACAGCACGCA
17172825 G
196 G
* * * ** * * * *
17172826 GGGGGATCAGATCGATCC-CCAGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGTGCCTGTACG-
1 GGGGGATCGGGTCGATCCTCGA-CTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGTACGC
* * *
17172889 TTCGTTTCGTGGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGC
65 TT-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17172939 CCCAACCAGA
Statistics
Matches: 576, Mismatches: 112, Indels: 22
0.81 0.16 0.03
Matches are distributed among these distances:
190 119 0.21
191 4 0.01
192 1 0.00
193 1 0.00
195 35 0.06
196 252 0.44
197 164 0.28
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
GGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGTACGCT
TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
AGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGACAGCACGCA
G
Found at i:17172548 original size:26 final size:26
Alignment explanation
Indices: 17172518--17172570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17172508 GTAGGCTTGG
*
17172518 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17172544 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17172570 G
1 G
17172571 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17172753 original size:26 final size:26
Alignment explanation
Indices: 17172717--17172767 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17172707 TGGCTTAGGT
17172717 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
17172743 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17172768 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:17172768 original size:393 final size:386
Alignment explanation
Indices: 17172107--17172938 Score: 972
Period size: 393 Copynumber: 2.1 Consensus size: 386
17172097 CAGCGCCCTA
* * * * *
17172107 ACGCTCGTTTCATGGGTTA-GCTTAGGCATATGGAATTCATTCCATGTTTAAGCATACAGAGTTC
1 ACGCTTGTTTCATGGG-TAGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
* * * * *
17172171 ATTCCCAATCTAAGATCAGACCGACAGTAGTGACAGCAGGACCGGTAACAGGATCGATAGCATGC
65 ATTCCCAATCTAAGATCAAACAGACAGTAGTGACAGCAGGACCAGTAACAGGATCGACAGCACGC
* * ** * * * * * * *
17172236 AGGGGGATCGGGTCGGTCCTCGACTTACGCATTCTGCCTTTTCGGCTGGCTGAGCGCCCGTACGC
130 AGGGGGATCGAGCCAATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGC
* * *
17172301 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGGAGTTCTTTCC
195 TCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * ** * **
17172366 CAGTCTAAGATTGGATCGGATCAAGGGTTGTGATAGTAGGACCAGCAGTAGGATCGGTAGCACGC
260 CAGTCTAAGATCGGATCGGACCAAGGGTTACGATAGCAGGACCAGCAGTAGGATCGACAGCACGC
* * * * * **
17172431 AGGAAGGACCGGGTCGATCCTC-GACTTACGTATTCTACCTCTTCGATCGGGTGAATGCCCGT
325 AGGAAGGACCAGATCGATCCCCAG-CTTACGCATTCTACCTCTCCGATCGACTGAATGCCCGT
17172493 ACGCTTGTTTCATGGGTAGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
1 ACGCTTGTTTCATGGGTAGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
* * * *
17172558 TTCCCAGTCTAAGATCAAATCAGACCAAG-GGTTGCCGCAGCAGGACCAGTAGCAGGATCGACAG
66 TTCCCAATCTAAGATCAAA-CAGA-C-AGTAG-TG--ACAGCAGGACCAGTAACAGGATCGACAG
*
17172622 CACGCAGGGGGGGATCGAGCCAATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACC
125 CACGCA--GGGGGATCGAGCCAATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCACC
* * * *
17172687 CGCACTCTTGTTTTATGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCATACGGAGT
188 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGT
*
17172752 TCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGATAGCAGGACCAGTAGTAGGATCGAC
253 TCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGATAGCAGGACCAGCAGTAGGATCGAC
* ** * ** * * *
17172817 AGCACGTAGGGGGGATCAGATCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGTGC
318 AGCACGCAGGAAGGACCAGATCGATCCCCAGCTTACGCATTCTACCTCTCCGATCGACTGAATGC
*
17172882 CTGT
383 CCGT
* * *
17172886 ACG-TTCGTTTCGTGGGTTGGCTTAGGG-ATAGGGAGTTCATTCCATGTCTAAGC
1 ACGCTT-GTTTCATGGGTAGGCTT-GGGCATACGGAGTTCATTCCATGTCTAAGC
17172939 CCCAACCAGA
Statistics
Matches: 373, Mismatches: 61, Indels: 17
0.83 0.14 0.04
Matches are distributed among these distances:
385 2 0.01
386 74 0.20
387 3 0.01
388 2 0.01
389 4 0.01
391 29 0.08
392 2 0.01
393 253 0.68
394 4 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (386 bp):
ACGCTTGTTTCATGGGTAGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
TTCCCAATCTAAGATCAAACAGACAGTAGTGACAGCAGGACCAGTAACAGGATCGACAGCACGCA
GGGGGATCGAGCCAATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGGATCGGACCAAGGGTTACGATAGCAGGACCAGCAGTAGGATCGACAGCACGCA
GGAAGGACCAGATCGATCCCCAGCTTACGCATTCTACCTCTCCGATCGACTGAATGCCCGT
Done.