Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 147 of 402
Found at i:17173112 original size:26 final size:26
Alignment explanation
Indices: 17173082--17173132 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17173072 GTTGACTTAG
* *
17173082 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
17173108 GCATATAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
17173133 GGATCAGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17174353 original size:158 final size:156
Alignment explanation
Indices: 17173886--17174380 Score: 528
Period size: 158 Copynumber: 3.1 Consensus size: 156
17173876 TAAGCATGTG
* * * * *
17173886 GAGCTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGACAGAAAGATCGACAGCATGC
1 GAGCTCATT-CCATGTCTAAGATCAGA-CGGACCGAGGGTTGCGATAGCAGGATCGATAGCATGC
* * * * *
17173950 AGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCTCCCGCACG
64 AGGGGGGATCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAG-TGCCGCACG
**
17174015 C-CCGTTTCATGGGTTGGCTTAGGCATAGG
128 CTCC-TTTCATGGGTTGGCTTAGGCATACA
* ** * * * * * * *
17174044 GAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAACAGGATCGGTAGCACGTA
1 GAGCTCATTCCATGTCTAAGATC-AGACGGACCGAGGGTTGCGATAGCAGGATCGATAGCATGCA
* * * * * * * * * *
17174109 GAGGGGGACCGGGTCGATCCCTGGCTTGCGTATTATGCCTTTTCAGTGGGCTCAGCGCCTGAACG
65 G-GGGGGATCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGTGCC-GCACG
** *
17174174 CTTGTTTCATGGGTTGACTTAGGCATACA
128 CTCCTTTCATGGGTTGGCTTAGGCATACA
*
17174203 AAGCTCATTCCCA-GTCTAAGATCAGACGGGACCGAGGGTTGCGATAGCAGGATCGATAGCATGC
1 GAGCTCATT-CCATGTCTAAGATCAGAC-GGACCGAGGGTTGCGATAGCAGGATCGATAGCATGC
* *
17174267 AGGGGGGATCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTTGGCTGAGTGCTCGCATG
64 AGGGGGGATCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGTGC-CGCACG
17174332 CTCCTTTCATGGGTTGGCTTAGGCATACA
128 CTCCTTTCATGGGTTGGCTTAGGCATACA
*
17174361 GAGTTCATTCCATGTCTAAG
1 GAGCTCATTCCATGTCTAAG
17174381 CATACGAAGA
Statistics
Matches: 266, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 140 0.53
159 117 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (156 bp):
GAGCTCATTCCATGTCTAAGATCAGACGGACCGAGGGTTGCGATAGCAGGATCGATAGCATGCAG
GGGGGATCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGTGCCGCACGCTC
CTTTCATGGGTTGGCTTAGGCATACA
Found at i:17174620 original size:179 final size:178
Alignment explanation
Indices: 17174196--17174709 Score: 532
Period size: 179 Copynumber: 2.8 Consensus size: 178
17174186 GTTGACTTAG
* * * * *
17174196 GCATACAAAGCTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGAAGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAG-TAGCAGGATCGACA
* * * * *** * *
17174261 GCATGCAGGGGGGA-TCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTTGGCTGAGTGC
65 GCACGCAGGGGGGACT-GAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTAGTCGGCTGAGCGC
* * * *
17174325 TCGCATGCTCCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCGCATGCTCGTTTC----G-TGGGTTAGGCATACAGAGTTCATCCCATGTCTAA
* * *
17174380 GCATACGAAGATCATTCCCAGTCTAAGATCAGACCGGATCGAGGCTTGCAGCAGCAGGATCGACA
1 GCATACGAAGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-AGTAGCAGGATCGACA
* * *
17174445 GCACGTAGGGGGGACTGAGCCGATCCTCGGCTTGAGCATTCTGCCTCTTTAGTCGGCTGAGCGCC
65 GCACGCAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTAGTCGGCTGAGCGCC
* *
17174510 CGCACGCTCGTTTCGTGGGTTAGGCATACAGATTTCATCCCCA-GTCTAA
130 CGCATGCTCGTTTCGTGGGTTAGGCATACAGAGTTCAT-CCCATGTCTAA
* * * * *
17174559 GCATACGAAGTTCATTCCCAGTCTAAGAT-TGAACTGGACCGAGGGTTGTAGTAGTAGGATCGGC
1 GCATACGAAGATCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTG-AGTAGCAGGATCGAC
* * * ** * * *
17174623 AGTACGCAGGGGGGACCGAGCTGATCCCCAACTTGCGCATTCTGCCTC-TTCGACCGGCTGAGCA
64 AGCACGCAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTAG-TCGGCTGAGCG
*
17174687 CCCGCATGCCCGTTTCGTGGGTT
128 CCCGCATGCTCGTTTCGTGGGTT
17174710 GGCTTAGGCG
Statistics
Matches: 277, Mismatches: 48, Indels: 15
0.81 0.14 0.04
Matches are distributed among these distances:
178 4 0.01
179 150 0.54
180 4 0.01
184 117 0.42
185 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (178 bp):
GCATACGAAGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGTAGCAGGATCGACAG
CACGCAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTAGTCGGCTGAGCGCCC
GCATGCTCGTTTCGTGGGTTAGGCATACAGAGTTCATCCCATGTCTAA
Found at i:17174906 original size:26 final size:26
Alignment explanation
Indices: 17174876--17174928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17174866 GTTGGCTTAG
*
17174876 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17174902 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17174928 G
1 G
17174929 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17175631 original size:26 final size:26
Alignment explanation
Indices: 17175583--17175635 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17175573 GTTGACTTAG
* *
17175583 GCATACGGAGTTCATCTCTAGTCTAA
1 GCATACGAAGTTCATCTCCAGTCTAA
17175609 GCATACGAAGTTCAT-TCCCAGTCTAA
1 GCATACGAAGTTCATCT-CCAGTCTAA
17175635 G
1 G
17175636 ATTGGATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCTCCAGTCTAA
Found at i:17175910 original size:159 final size:160
Alignment explanation
Indices: 17175693--17176113 Score: 458
Period size: 159 Copynumber: 2.6 Consensus size: 160
17175683 AGGGTCCGCC
* * * * * *
17175693 CCGATCCTCAGCTTGCGCATTCTGCCTCT-CAGACCGGCTGAGCACCTGCACGCTCGTTTCGTGG
1 CCGATCCCCGGCTTGCGCATTATGCCTCTCCAG-TCGGCTGAGCACCCGCATGCTCGTTTCGTGG
* * *
17175757 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC-GAACCGAGGGTTGTGGCA
65 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAG-ACCGAGGGTTGCGGCA
*** * *
17175820 GTGGGACCGACAGCACGCAGAAGGGG-ATCGGG
129 GCAAGACCGACAGCACGCAG-AGGGGAACCGAG
* * * * *
17175852 TCGATCCCCGGCTTGCCCATTATGCCTCTCCAGTCGGCTCAGCACCCGCATGTTCGTTTTGTGGG
1 CCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTGAGCACCCGCATGCTCGTTTCGTGGG
* * *
17175917 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAG
66 TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAG
* * * *
17175980 CAAGATCGATAGCACGTAGGGGGGAACCGAG
130 CAAGACCGACAGCACGCAGAGGGGAACCGAG
* * * * * * * *
17176011 CCGGTCCCTGGCTTGCGTATTTTGCCTCTCCGGTCGACTGAGCCCCCGCATGCTCGTTTCATGGG
1 CCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTGAGCACCCGCATGCTCGTTTCGTGGG
17176076 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17176114 TATGGAGTTC
Statistics
Matches: 215, Mismatches: 40, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
158 10 0.05
159 197 0.92
160 8 0.04
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (160 bp):
CCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTGAGCACCCGCATGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGC
AAGACCGACAGCACGCAGAGGGGAACCGAG
Found at i:17176115 original size:26 final size:26
Alignment explanation
Indices: 17176085--17176137 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17176075 GTTGGCTTAG
17176085 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
*
17176111 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
17176137 G
1 G
17176138 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:17176983 original size:26 final size:26
Alignment explanation
Indices: 17176954--17177006 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17176944 GTTGGCTTAG
*
17176954 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17176980 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17177006 G
1 G
17177007 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17177435 original size:26 final size:26
Alignment explanation
Indices: 17177406--17177458 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17177396 GTTGACTTAG
17177406 GCATACGAAATTCA-TCCTCAGTCTAA
1 GCATACGAAATTCATTCC-CAGTCTAA
* *
17177432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
17177458 G
1 G
17177459 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:17177785 original size:26 final size:26
Alignment explanation
Indices: 17177749--17177801 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17177739 GTTGGCTTAG
*
17177749 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
17177775 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
17177801 G
1 G
17177802 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:17178986 original size:25 final size:26
Alignment explanation
Indices: 17178958--17179007 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17178948 TTGGCTTAGG
17178958 CATACG-AGTTCATT-CCATGTCTAAC
1 CATACGAAGTTCATTCCCAT-TCTAAC
*
17178983 CATACGAAGTTCTTTCCCATTCTAA
1 CATACGAAGTTCATTCCCATTCTAA
17179008 GATCGGACTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 6 0.27
26 12 0.55
27 4 0.18
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCATTCTAAC
Found at i:17179205 original size:26 final size:26
Alignment explanation
Indices: 17179155--17179207 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17179145 GTTGGTTTAG
* *
17179155 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
17179181 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17179207 G
1 G
17179208 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17179539 original size:26 final size:26
Alignment explanation
Indices: 17179510--17179562 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17179500 GTTGACTTAG
17179510 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
17179536 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17179562 G
1 G
17179563 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17179846 original size:159 final size:159
Alignment explanation
Indices: 17179676--17180039 Score: 380
Period size: 158 Copynumber: 2.3 Consensus size: 159
17179666 CGGATGCCCA
* * *
17179676 TTTCGTGGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCAGACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGATCAGACTGAGGGT
** * *
17179740 TATGGCAGC-GAGACCGGTAGAACATAGAGAGGGATCAGGCCGATCCCC-AGCTTGCGCATTATG
66 TATGGCAGCAG-GACCGACAGAACACAG-GAGGGATCAAGCCGATCCCCGA-CTTGCGCATTATG
* * ** *
17179803 CCTCTTCGGTCGGCTCAGTGCCCGCACGCTCG
128 CCTCTCCAGTCAACTCAGCGCCCGCACGCTCG
* * * * * * *
17179835 TTTCGTGGGTTGACTTATGCATATC-AAGTTCAGTCCCA-GTCTAAG-ATTAGATCGGGCTGAGG
1 TTTCGTGGGTTGGCTTAGGCATA-CGGAGTTCA-TTCCATGTCTAAGCACTAGATCAGACTGAGG
* * * * * * *
17179897 GTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGATCAAGCCGATCCCCGACTTGCGCATTCTGC
64 GTTATGGCAGCAGGACCGACAGAACACAGGAGGGATCAAGCCGATCCCCGACTTGCGCATTATGC
* * *
17179962 CTCTCCAGTCAACTGAGCGCCCTCACGCTTG
129 CTCTCCAGTCAACTCAGCGCCCGCACGCTCG
17179993 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17180040 TACAGAGTTC
Statistics
Matches: 164, Mismatches: 33, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
157 5 0.03
158 91 0.55
159 63 0.38
160 5 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.26
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGATCAGACTGAGGGT
TATGGCAGCAGGACCGACAGAACACAGGAGGGATCAAGCCGATCCCCGACTTGCGCATTATGCCT
CTCCAGTCAACTCAGCGCCCGCACGCTCG
Found at i:17180047 original size:26 final size:26
Alignment explanation
Indices: 17180011--17180067 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
17180001 GTTGGCTTAG
*
17180011 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17180037 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17180063 GCATA
1 GCATA
17180068 TGGATTGCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17181313 original size:26 final size:26
Alignment explanation
Indices: 17181263--17181315 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17181253 GTTGGGTTAG
* *
17181263 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17181289 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17181315 G
1 G
17181316 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17181710 original size:26 final size:25
Alignment explanation
Indices: 17181643--17181721 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
17181633 GTTGGCTTAG
* *
17181643 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCAT-TCCAGTCTAA
17181669 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
17181695 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
17181721 G
1 G
17181722 ATCGGACTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.06
26 43 0.88
27 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:17181883 original size:26 final size:26
Alignment explanation
Indices: 17181853--17181905 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17181843 GTTGGCTTAG
*
17181853 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17181879 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17181905 G
1 G
17181906 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17182804 original size:26 final size:26
Alignment explanation
Indices: 17182774--17182826 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17182764 GTTGGCTTAG
17182774 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
17182800 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17182826 G
1 G
17182827 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17182941 original size:184 final size:184
Alignment explanation
Indices: 17182616--17182985 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 184
17182606 GTTGACTTAT
* *
17182616 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACAAGACCGAGAGTTGCGATAGTAGGATCAATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACAAGACCGAGAGTTGCGACAGCAGGATCAATA
* * *
17182681 GCACGCAGGGGAGGATCGGGCCATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGCTAAGTGCC
66 GCACGCAGGGGAGGATCGGGCCATCCCCGACTTGGGCATTCTGCCTCTCCGACCGACTAAGTGCC
* * * *
17182746 CGCATGCTCG-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTTC-TGGGTTAGCTTAGCCATACGGAGTTCATTCCATCTCTAA
* ** * **
17182800 GCATATGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGA-AGTTGCGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACAAGACCGAGAGTTGCGACAGCAGGATCAATA
* * * * * * *
17182864 GCACGTAGGGGGGGATCGGGCCGATCCCCGGCTTGGGTATTCTGCCTTTCCGACTGACTGAGTGC
66 GCACGCAGGGGAGGATCGGGCC-ATCCCCGACTTGGGCATTCTGCCTCTCCGACCGACTAAGTGC
*
17182929 CTGCACGCTCGTTTTCTGGGTTAGCTTAGCCATACGGAGTTCATTCCATCTCTAA
130 CCGCACGCTCGTTTTCTGGGTTAGCTTAGCCATACGGAGTTCATTCCATCTCTAA
17182984 GC
1 GC
17182986 GCTAGCCGGA
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 37 0.23
184 120 0.75
185 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATTGGACAAGACCGAGAGTTGCGACAGCAGGATCAATA
GCACGCAGGGGAGGATCGGGCCATCCCCGACTTGGGCATTCTGCCTCTCCGACCGACTAAGTGCC
CGCACGCTCGTTTTCTGGGTTAGCTTAGCCATACGGAGTTCATTCCATCTCTAA
Found at i:17184370 original size:26 final size:26
Alignment explanation
Indices: 17184341--17184393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17184331 GTTGACCTAG
*
17184341 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17184367 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17184393 G
1 G
17184394 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17184574 original size:26 final size:26
Alignment explanation
Indices: 17184524--17184576 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17184514 GTTGGCTTAG
*
17184524 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17184550 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17184576 G
1 G
17184577 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17185224 original size:26 final size:26
Alignment explanation
Indices: 17185194--17185244 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17185184 GTTGACTTAG
*
17185194 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATAAGGAGTTCATTCC-CAGTCTAA
17185220 GCATAAGGAGTTCATTCCCAGTCTA
1 GCATAAGGAGTTCATTCCCAGTCTA
17185245 GGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:17185408 original size:26 final size:26
Alignment explanation
Indices: 17185378--17185430 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17185368 GTTGGCTTAG
17185378 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
17185404 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
17185430 G
1 G
17185431 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:17186327 original size:11 final size:11
Alignment explanation
Indices: 17186311--17186345 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
17186301 CACTCGGGAC
17186311 AGCATCGCCGG
1 AGCATCGCCGG
*
17186322 AGCATCGCCAG
1 AGCATCGCCGG
17186333 AGCATCGCCGG
1 AGCATCGCCGG
17186344 AG
1 AG
17186346 TACCGTCGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.23, C:0.34, G:0.34, T:0.09
Consensus pattern (11 bp):
AGCATCGCCGG
Found at i:17187152 original size:26 final size:26
Alignment explanation
Indices: 17187112--17187164 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17187102 GTTGACTTAG
*
17187112 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACGGAGCTCATTCCCGATCTAA
* *
17187138 GCATACGGAGCTCATTCTCGGTCTAA
1 GCATACGGAGCTCATTCCCGATCTAA
17187164 G
1 G
17187165 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCGATCTAA
Found at i:17187283 original size:173 final size:169
Alignment explanation
Indices: 17186864--17187338 Score: 582
Period size: 172 Copynumber: 2.8 Consensus size: 169
17186854 CCTAGCACCC
** *
17186864 GATCGATCCCCGGCTTGCGCATCCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTG
1 GATCGATCCCCGGCTTGCGCATTATGCCCCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTG
* *
17186929 GGTTGACTTAGCCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTCGCGGCAG
66 GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAG--CCAGTCGGACCGA-GGTCGCGGCAG
* *
17186994 CTGGACCGGCAGCGGGATTGGCAGCAGCACGCGGGGGGACCG
128 ATGGACCGACAGCGGGATTGGCAGCAGCACGCGGGGGGACCG
** * * * *
17187036 GGCCGATCCCCGGCTTGCGCATTATGCCCCTCCAGTCGACTGAGCGCCCGCACGCTCGTTTCGTG
1 GATCGATCCCCGGCTTGCGCATTATGCCCCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTG
* *
17187101 GGTTGACTTAGGCATACGGAGTTCATTCC-CGATCTAAG-CA-TACGGAGCTC-A-TTCTCGGTC
66 GGTTGACTTAGGCATACGGAGTTCATTCCACG-TCTAAGCCAGT-CGGA-C-CGAGGTCGCGG-C
17187161 TAAGATCGGACCGACAGCGGGATTGGCAGCAGCACGCGGGGGGGACCG
126 --AGAT-GGACCGACAGCGGGATTGGCAGCAGCACGC-GGGGGGACCG
* * *
17187209 GATCGGTCTCCGGCTTGCGCATTATGCCCCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTT
1 GATCGATCCCCGGCTTGCGCATTATGCCCCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTG
* * * *
17187274 GGTTGACTTAGGCACACGGAGTTCATTCCATGTCTAAGCCCCGGTCGGACCGAGGGTTGCGGCAG
66 GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAG--CCAGTCGGACCGA-GGTCGCGGCAG
17187339 CGAGACCGGT
Statistics
Matches: 256, Mismatches: 30, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
168 6 0.02
169 7 0.03
170 2 0.01
171 5 0.02
172 119 0.46
173 100 0.39
174 4 0.02
175 2 0.01
176 6 0.02
177 5 0.02
ACGTcount: A:0.15, C:0.32, G:0.32, T:0.20
Consensus pattern (169 bp):
GATCGATCCCCGGCTTGCGCATTATGCCCCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAGCCAGTCGGACCGAGGTCGCGGCAGATG
GACCGACAGCGGGATTGGCAGCAGCACGCGGGGGGACCG
Found at i:17187615 original size:157 final size:158
Alignment explanation
Indices: 17187218--17187628 Score: 415
Period size: 157 Copynumber: 2.6 Consensus size: 158
17187208 GGATCGGTCT
* * * * *
17187218 CCGGCTTGCGCATTATGCCCCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTTGGTTGACTT
1 CCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCG-TGGTTGACTT
* * *
17187283 AGGCACACGGAGTTCATT-CCATGTCTAAGCCCCGGTCGGACCGAGGGTTGCGGCAGCGAGACCG
65 AGGCATACGGAGTTCATTCCCATGTCTAAGCACCGGTCGGACCGAGGGTTGCGGCAGAGAGACCG
**
17187347 GTAACACGCAGAGGGGGACGGGCCGATCC
130 ACAACACGCAGAGGGGGACGGGCCGATCC
* * * * * * * *
17187376 CCGGCTTGTGCATTAC-GCCTCTCTGACTGGCTCAGCACCCGAACGTTCATTTTGTGGGTTGACT
1 CCGGCTTGCGCATT-CTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGT-GGTTGACT
**
17187440 TAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGATCGGACCGAGGGTTGCGG-AGTAG-GA
64 TAGGCATACGGAGTTCATTCCCATGTCTAAGCACCGG-TCGGACCGAGGGTTGCGGCAG-AGAGA
* * * ** *
17187501 TCGACAGCACGTAG-GGGGGACTGGGTTGGTCC
127 CCGACAACACGCAGAGGGGGAC-GGGCCGATCC
* ** * *
17187533 CTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGATTACCTGCACGCTCGTTTCGTGAGTTGGCTT
1 CCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTG-GTTGACTT
*
17187598 AGGCATACGGAGTTCATT-CCATGCCTAAGCA
65 AGGCATACGGAGTTCATTCCCATGTCTAAGCA
17187629 TACGGAGTTC
Statistics
Matches: 203, Mismatches: 40, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
156 12 0.06
157 95 0.47
158 93 0.46
159 3 0.01
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (158 bp):
CCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGTTGACTTA
GGCATACGGAGTTCATTCCCATGTCTAAGCACCGGTCGGACCGAGGGTTGCGGCAGAGAGACCGA
CAACACGCAGAGGGGGACGGGCCGATCC
Found at i:17188312 original size:26 final size:26
Alignment explanation
Indices: 17188283--17188335 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17188273 GTTGGCTTAG
17188283 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17188309 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17188335 G
1 G
17188336 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17188334 original size:683 final size:684
Alignment explanation
Indices: 17187018--17188535 Score: 1680
Period size: 683 Copynumber: 2.2 Consensus size: 684
17187008 GGATTGGCAG
* * * * * * **
17187018 CAGCACGCGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCCCTCCAGTCGACTGAGCGC
1 CAGCACGCAGAGGGACCGGGCAGATCCCCGGCTTGCGCATTCTGCCACTCCAGCCGGTTGAGCGC
* *
17187083 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CGATCTAAGCATACGGA
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TCCTCGGTCTAAGCATACGGA
* ** * * *
17187147 GCTCATT-CTCGGTCTAAGATCGGACCGACAGCGGGATTGGCAGCAGCACGCGGGGGGGACCGGA
130 GTTCATTCCTCAATCTAAGATCAGACCGACAGAGGGATTGGCAGCAGCACGCAGGGGGGACCGGA
* * * * * * * * *
17187211 TCGGTCTCCGGCTTGCGCATTATGCCCCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTTGG
195 CCGATCCCCGACTTGCGCATTATGCCCCTCCGGCCGGCTGAGAGCCCACACACCCGTTCCGTGGG
* * * * *
17187276 TTGACTTAGGCACACGGAGTTCATTCCATGTCTAAGCCCCGGTCGGACCGAGGGTTGCGGCAGCG
260 TTGACATAAGCACACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGCGGCAGCG
** * * * * * * *
17187341 AGACCGGTAACACGCAGAGGGGGACGGGCCGATCCCCGGCTTGTGCATTACGCCTCTCTGACTGG
325 AGACCGACAACACACAAAGAGGGACGAGCCGATCCCCGACTTGCGCATTACGCCTCTCGGACTGG
* * *
17187406 CTCAGCACCCGAACGTTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
390 CTCAACACCCGAACGCTCATTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** ** * * * **
17187471 TTGGATCGGACCGAGGGTTGCGGAGTAGGATCGACAGCACGTAGGGGGGACTGGGTTGGTCCCTG
455 TCAGATCGGACCGAGGGTTGCGGAACAGGATCGACAGCACGCAGGAGGGACTGGGTCGGTCCCCA
* * ** * *
17187536 GCTTGCGCATTCTGCCTCTCCGACCGGCTGATTACCTGCACGCTCGTTTCGTGAGTTGGCTTAGG
520 GCTTACACATTCTGCCTCTCCGACCGGCTGAGGACCCGCACGCTCGTTTCATGAGTTGGCTTAGG
* *
17187601 CATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACC
585 CATACAGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACC
* * * *
17187666 AAGGCTTGCGGCAGTAGGACCAGCAACAGGATCGG
650 AAGGCTTGCGACAGCAGGACCAACAACAGGATCGA
* * * * * * * *
17187701 CAGTACGTAGAGGGACCGGACTGATCCCCGGCTTGTGCATTCTGCCTCTCTAGCCGGTTGAGCAC
1 CAGCACGCAGAGGGACCGGGCAGATCCCCGGCTTGCGCATTCTGCCACTCCAGCCGGTTGAGCGC
* *
17187766 CCGCACACTCTTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCTCGGTCTAAGCATACGGAG
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCTCGGTCTAAGCATACGGAG
* * * * * *
17187831 TTCATTCCT-AATCTAAGATCAGACCAGACCGAGGG-TT-GCGGTAGCATGCAGGGGGGATCGGG
131 TTCATTCCTCAATCTAAGATCAGACC-GACAGAGGGATTGGCAGCAGCACGCAGGGGGGACCGGA
* * * * * *
17187893 CCGATCCCCGACTTGTGCATTCTGCCTCTTCGGCTGG-TCGAGAGCCCACACACCCGTTTTC-TG
195 CCGATCCCCGACTTGCGCATTATGCCCCTCCGGCCGGCT-GAGAGCCCACACACCCG-TTCCGTG
* ** * * *
17187956 GGTTGGCATAAGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTGGCAG
258 GGTTGACATAAGCACACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGCGGCAG
* * * *
17188021 CGGGACCGACAACACACAAAGAGGGACCGAGCCGATCCCCGACTTGCGCATTATGCTTCTCCGGT
323 CGAGACCGACAACACACAAAGAGGGA-CGAGCCGATCCCCGACTTGCGCATTACGCCTCT-CGGA
** * * *
17188086 C-GGCTCAATGCCCGAATGCTCGTTTTGTGGGTTGACTTAAGCGTACGGAGTTCATTCCCAGTCT
386 CTGGCTCAACACCCGAACGCTCATTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCT
*
17188150 AAGATCAGA-CTGGACCGAGGGTTGCGGCAACAGGATC-ACAGCATGCAGGAGGGA-TCGGGTCG
451 AAGATCAGATC-GGACCGAGGGTTGCGG-AACAGGATCGACAGCACGCAGGAGGGACT-GGGTCG
* *** *
17188212 GTCCCCAGCTTACATATTCTGCCTCTCCGGTTGGCTGAGGGCCCGCACGCTCG-TTCTATGAGTT
513 GTCCCCAGCTTACACATTCTGCCTCTCCGACCGGCTGAGGACCCGCACGCTCGTTTC-ATGAGTT
* *
17188276 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
577 GGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* * *
17188341 ACAGGACCGAGGCTTGCGATAGCAGGACCAACAGCAGGATCGA
642 ACAGGACCAAGGCTTGCGACAGCAGGACCAACAACAGGATCGA
* * * * * * * *
17188384 TAGCACGCAGGGAGGATCGGGCAGATCCTCAGCTTGCGCATTCTACCACTCCAACCAGTTGAGCG
1 CAGCACGCAGAG-GGACCGGGCAGATCCCCGGCTTGCGCATTCTGCCACTCCAGCCGGTTGAGCG
* * * * *
17188449 CCCGCACGCTCGTTTCATGGGTTCACTTAGTCATAC-AGAGTTCAT-CTCCAGTCTAAGCATACA
65 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATCCT-CGGTCTAAGCATACG
* *
17188512 GAGTTCATTCC-CAGTTTAAGATCA
128 GAGTTCATTCCTCAATCTAAGATCA
17188536 AACTGGATCG
Statistics
Matches: 686, Mismatches: 134, Indels: 29
0.81 0.16 0.03
Matches are distributed among these distances:
681 1 0.00
682 143 0.21
683 411 0.60
684 131 0.19
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (684 bp):
CAGCACGCAGAGGGACCGGGCAGATCCCCGGCTTGCGCATTCTGCCACTCCAGCCGGTTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCTCGGTCTAAGCATACGGAG
TTCATTCCTCAATCTAAGATCAGACCGACAGAGGGATTGGCAGCAGCACGCAGGGGGGACCGGAC
CGATCCCCGACTTGCGCATTATGCCCCTCCGGCCGGCTGAGAGCCCACACACCCGTTCCGTGGGT
TGACATAAGCACACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGCGGCAGCGA
GACCGACAACACACAAAGAGGGACGAGCCGATCCCCGACTTGCGCATTACGCCTCTCGGACTGGC
TCAACACCCGAACGCTCATTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGATCGGACCGAGGGTTGCGGAACAGGATCGACAGCACGCAGGAGGGACTGGGTCGGTCCCCAG
CTTACACATTCTGCCTCTCCGACCGGCTGAGGACCCGCACGCTCGTTTCATGAGTTGGCTTAGGC
ATACAGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCA
AGGCTTGCGACAGCAGGACCAACAACAGGATCGA
Found at i:17189152 original size:25 final size:26
Alignment explanation
Indices: 17189108--17189159 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
17189098 GTTGACTTAG
17189108 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17189134 GCATAC-GAGTTGATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17189159 G
1 G
17189160 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17189925 original size:26 final size:26
Alignment explanation
Indices: 17189895--17189954 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
17189885 GTTGACTTAG
*
17189895 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
17189921 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
17189947 G-AT-CGGAC
1 GCATACGGAC
17189955 CGGACCGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:17190411 original size:159 final size:157
Alignment explanation
Indices: 17189921--17190414 Score: 488
Period size: 159 Copynumber: 3.1 Consensus size: 157
17189911 CCCAGTCTAA
* *
17189921 GCATACGGACTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
1 GCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * **
17189986 GCACATAGGGGGGATCGGGCCGAACCCTAACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
66 GCACGTAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
* *
17190051 CGCAAGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACG-CTGTTTCGTGGGTTGGCTTAG
* * * * * ** * * * *
17190079 GCATAGGGAGTTTATT-CCACGTTTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCAAGACCGA
1 GCATACGGACTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCGA
* ** * * * * * * * * *
17190142 CAGCTTGCAAAAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCGCTTCGGCTGGCTCAGC
64 TAGCACG-TAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* *
17190207 ACCCGCACGCTCGTTTTGTGGGTTGACTTAG
128 ACCCGCACGCT-GTTTCGTGGGTTGGCTTAG
* * * * * *
17190238 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * **
17190303 GCACGTAAGGTGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGTGC
66 GCACGTAAGG-GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
*
17190368 CCGCACGCATGTTTCATGGGTTGGCTTAG
130 CCGCACGC-TGTTTCGTGGGTTGGCTTAG
**
17190397 GCATATAGACTTCATTCC
1 GCATACGGACTTCATTCC
17190415 ATGTCTTAGC
Statistics
Matches: 257, Mismatches: 71, Indels: 15
0.75 0.21 0.04
Matches are distributed among these distances:
157 4 0.02
158 51 0.20
159 197 0.77
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGTAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
CGCACGCTGTTTCGTGGGTTGGCTTAG
Found at i:17190779 original size:26 final size:26
Alignment explanation
Indices: 17190750--17190802 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17190740 GTTGACTTAG
*
17190750 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17190776 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17190802 G
1 G
17190803 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17190984 original size:26 final size:26
Alignment explanation
Indices: 17190934--17190986 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17190924 GTTGGCTTAG
*
17190934 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17190960 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17190986 G
1 G
17190987 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17192039 original size:159 final size:157
Alignment explanation
Indices: 17191719--17192144 Score: 342
Period size: 159 Copynumber: 2.7 Consensus size: 157
17191709 GATCAGATCG
* * * * * * ** *
17191719 GACCGAGGGTTACGGCAGCAGGATCAACAGCACAC-GGGGGGACTGGGCCAATCCCCAGTTTACG
1 GACCGAGGGCTACGGCAGCAAGACCGACAGCACGCAGGGGGGACCGGGCCAAT-CCCAACTTGCG
* * * * * * * *
17191783 TATTCTGCCTAC-CCGACCGGC-TGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
65 CATTATGCCT-CTCTGGCC-GCTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
17191846 GGAGTTCATTCCATGTCTAAGCCCCAGCCG
128 AGAGTTCATTCCATGTCTAAGCCCCAGCCA
* ** * * ** *
17191876 GACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGTGGAGGGGGACCGGGCTAATCCCCAACTTGC
1 GACCGAGGGCTACGGCAGCAAGACCGACAGCACGCAG-GGGGGACCGGGCCAAT-CCCAACTTGC
*
17191941 GCATTATGCCTCTCTGGCCTGCTT-AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTTGGCATAC
64 GCATTATGCCTCTCTGGCC-GCTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
**** *
17192005 AGAGTTCATTCCCA-GTCTAAG-ATTGGACTA
128 AGAGTTCATT-CCATGTCTAAGCCCCAG-CCA
* * * ** *
17192035 GACCGAGGGCTACGGCAGCAAGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCGGCTTGTGC
1 GACCGAGGGCTACGGCAGCAAGACCGACAGCACGCAGGGGGGACCGGGCCAATCCCAACTTGCGC
* * ** *
17192100 ATTCTGCCTCTCTGGCCGGTTGAGCGCCCACACGCTCATTTCGTG
66 ATTATGCCTCTCTGGCCGCTTGAGCGCCTGCACGCTCGTTTCGTG
17192145 ACTTCATTCC
Statistics
Matches: 212, Mismatches: 50, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 71 0.33
158 17 0.08
159 117 0.55
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (157 bp):
GACCGAGGGCTACGGCAGCAAGACCGACAGCACGCAGGGGGGACCGGGCCAATCCCAACTTGCGC
ATTATGCCTCTCTGGCCGCTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
GTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:17192907 original size:26 final size:26
Alignment explanation
Indices: 17192868--17192938 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
17192858 AGGAATATGA
17192868 AGTTCA-TCCACAGTCTAAGCATACAG
1 AGTTCATTCC-CAGTCTAAGCATACAG
17192894 AGTTCATTCCCAGTCTAAGCATACAG
1 AGTTCATTCCCAGTCTAAGCATACAG
*
17192920 AGTTCATTCCCAATCTAAG
1 AGTTCATTCCCAGTCTAAG
17192939 ATCGGACCGG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 40 0.93
27 3 0.07
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATACAG
Found at i:17193228 original size:159 final size:155
Alignment explanation
Indices: 17192944--17193410 Score: 492
Period size: 159 Copynumber: 3.0 Consensus size: 155
17192934 CTAAGATCGG
* *
17192944 ACCGGACCGAGGGTTGCGGCAGCAAGATTGACAGCACGCAGGGGGGACCCGGCCGATCCCCGGCT
1 ACCGGACCGAGGGTTGCGGCAGCAAGATCGACAACACGCAGGGGGGA-CCGGCCGATCCCCGGCT
* * * ** * *
17193009 TGCGCATTCTGCCTTTCCGGCCGGTTGAGCGCCCATACACCCGTTTCATGGGTTGGCTTAGGCAT
65 TGCGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
17193074 AGGGAGTTCATTCCATGTCTAAGCCCCA
130 A--GAGTTCATTCCATGTCTAAGCCCCA
* * * * * *
17193102 ACCGGACCGAGGGTTGTGGCAGCAAGACCGACACCACGCAGAGAGGGATCAGGCCGATCCTCGGC
1 ACCGGACCGAGGGTTGCGGCAGCAAGATCGACAACACGCAG-GGGGGA-CCGGCCGATCCCCGGC
* * * *
17193167 TTGTGCATTTTGCCTCTCTGGTCGGTTGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
64 TTGCGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* ****
17193232 TACCGAGTTCATTCC-TAGCCTAAGATTGA
129 TA--GAGTTCATTCCAT-GTCTAAGCCCCA
* ** * * *
17193261 ATCGGACCGAGGGTTGCGATAGCAAGATCGACAACACGTAGGGGGGACCGAGCCAATCCCCGTCT
1 ACCGGACCGAGGGTTGCGGCAGCAAGATCGACAACACGCAGGGGGGACCG-GCCGATCCCCGGCT
* * * * * *
17193326 TGCACATTCTGCCTCT-TCGATCGGCTGAGTGCCCGCACGCTCGTTTCGTGTGTTGGCTTAGGCA
65 TGCGCATTCTGCCTCTCT-GGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
17193390 T--AGTTCATTCCATGTCTAAGC
129 TAGAGTTCATTCCATGTCTAAGC
17193411 ATACGGAGTT
Statistics
Matches: 254, Mismatches: 50, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
154 16 0.06
155 1 0.00
157 3 0.01
158 107 0.42
159 127 0.50
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (155 bp):
ACCGGACCGAGGGTTGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGGCCGATCCCCGGCTT
GCGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
GAGTTCATTCCATGTCTAAGCCCCA
Found at i:17194162 original size:158 final size:157
Alignment explanation
Indices: 17193901--17194910 Score: 725
Period size: 158 Copynumber: 6.4 Consensus size: 157
17193891 CGGCTGGTTG
* * * * **
17193901 AGCACCCGCACGCCCGTTTCAT-GGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATC
* * **
17193965 A-ACCAGATCGAGGGTTGTGGCAGCGGGA-CTGATAGCACGCAGGGGGGACCGGGTCGATCCCTG
65 AGACCAGA-CGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAGGGGGGACCGGGTCGATCCCCA
* **
17194028 GCTTGTGCATTATGCCTCTTTGATCGACTC
128 GCTTGCGCATTATGCCTCTCCGATCGACTC
* * * * *
17194058 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTAATTCTCA-GTCTAAGATT
1 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAAGATC
* * *
17194122 GGACCGGACAGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAG
65 AGACCAGAC-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAG
* * * * * *
17194187 CTTACGCATTCTACCTCTCTGATCGGCTG
129 CTTGCGCATTATGCCTCTCCGATCGACTC
* * * * * * **
17194216 AGCACCCGCACGCCCGTTTCGTGGGTTGCCTTAGGTATAGGGAGTTGATTCCATGTCTAAGCCCC
1 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATC
* * * ** * ** *
17194281 AG-CCAGATCGAGGGTTGTGGTAGCGGGACCGGTAGCATGCAGAGGGGGACCAAGCCGATCCCCA
65 AGACCAGA-CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTCGATCCCCA
* * *
17194345 GCTTGCACATTATGCCTCTTCGA-CTGGCTC
128 GCTTGCGCATTATGCCTCTCCGATC-GACTC
** * * * * * * *
17194375 AGTGCTCGTACGCTCATTTCGTGGTTTGACTTATGCATATGGAGTTCATTTCCA-GTCTAAGATC
1 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TTCCATGTCTAAGATC
* * * * ** * *
17194439 AGATCGGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAGGGGGGATCGGGTCGATCCCC-G
65 AGACCAGAC-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAG
* * * ** *
17194503 TCTTGTGCATTCTGCCTCTCCGGTCGGTTG
129 -CTTGCGCATTATGCCTCTCCGATCGACTC
* * * * * ***
17194533 AGCACCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCT
1 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATC-
* * * ** * * *
17194598 AG-CCAGATCGATGGTTGTGGCAGC-GAGA-CCAGCAGCACACAGAGGCAGACCAGGCCAATCCC
65 AGACCAGA-CGAGGGTTGTGGCAGCAG-GATCGA-CAGCACGCAG-GGGGGACCGGGTCGATCCC
* * *
17194660 CGGCTTGCGCATTATGCCTCTTCGACCGACTC
126 CAGCTTGCGCATTATGCCTCTCCGATCGACTC
** * * * * *
17194692 AGTGCCCGCAGGCTCGTTTCATGGGTTGACTTATGCATA-TGATGTTCTTTCC-TAGTCCAAGAT
1 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA-GTTCATTCCAT-GTCTAAGAT
* * ** * * *
17194755 CAGATCAGACTGAGGGTTTTGGCAATAGGATCGACAGCACTCACGGGGGATCGGG-CTGATCCCC
64 CAGACCAGAC-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTC-GATCCCC
* * * ** *
17194819 AGCTTGTGCATTCTACCTCTCCGGCCGACTG
127 AGCTTGCGCATTATGCCTCTCCGATCGACTC
* * *
17194850 AGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
17194911 CATACGGAGT
Statistics
Matches: 656, Mismatches: 166, Indels: 61
0.74 0.19 0.07
Matches are distributed among these distances:
157 32 0.05
158 385 0.59
159 230 0.35
160 9 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCA
GACCAGACGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAGCT
TGCGCATTATGCCTCTCCGATCGACTC
Found at i:17194435 original size:317 final size:318
Alignment explanation
Indices: 17193777--17194911 Score: 1277
Period size: 317 Copynumber: 3.6 Consensus size: 318
17193767 CCCAATCTAA
* * * * * * * *
17193777 GCATATGTAGTTCA-TTCCTAGTCTAAGATCGGGCCGAACTGAGGGTTACAGCAGTAGGTTCGGC
1 GCATATGGAGTTCATTTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGAC
* ** * ** * ** *
17193841 AGCACGCATGGGGGATTAGGCCGATCCCTGGCTTACGGATTCTGGCTCTCCGG-CTGGTTGAGCA
66 AGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGGTC-GGCTGAGCA
* *
17193905 CCCGCACGCCCGTTTCAT-GGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
130 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * *
17193969 AGATCGAGGGTTGTGGCAGCGGGACTGATAGCACGCAG-GGGGGACCGGGTCGATCCCTGGCTTG
195 AGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTG
* * **
17194033 TGCATTATGCCTCTTTGA-TCGACTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
260 CGCATTATGCCTCTTCGACT-GACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
** * ** * *
17194092 GCATACAGAGTT-AATT-CTCAGTCTAAGATTGGACCGGACAGAGGGTTATGGCAGCAGGATCGA
1 GCATATGGAGTTCATTTCCT-AGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGA
* * *
17194155 CAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCTGATCGGCTGAGCA
65 CAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCA
* * * *
17194220 CCCGCACGCCCGTTTCGTGGGTTGCCTTAGGTATAGGGAGTTGATTCCATGTCTAAGCCCCAGCC
130 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
17194285 AGATCGAGGGTTGTGGTAGCGGGACCGGTAGCATGCAGAGGGGGACCAAGCCGATCCCCAGCTTG
195 AGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTG
* * * * * *
17194350 CACATTATGCCTCTTCGACTGGCTCAGTGCTCGTACGCTCATTTCGTGGTTTGACTTAT
260 CGCATTATGCCTCTTCGACTGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * **
17194409 GCATATGGAGTTCATTTCC-AGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGGT
1 GCATATGGAGTTCATTTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGAC
* ** * *
17194473 AGCACGTAGGGGGGATCGGGTCGATCCCC-GTCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCA
66 AGCACGCAGGGGGGATCGGGTCGATCCCCAG-CTTACGCATTCTACCTCTCCGGTCGGCTGAGCA
* * * *
17194537 CCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCTAGCC
130 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * ** *
17194602 AGATCGATGGTTGTGGCAGCGAGACCAGCAGCACACAGAGGCAGACCAGGCCAATCCCCGGCTTG
195 AGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTG
* * *
17194667 CGCATTATGCCTCTTCGACCGACTCAGTGCCCGCAGGCTCGTTTCATGGGTTGACTTAT
260 CGCATTATGCCTCTTCGACTGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * ** **
17194726 GCATAT-GATGTTC-TTTCCTAGTCCAAGATCAGATCAGACTGAGGGTTTTGGCAATAGGATCGA
1 GCATATGGA-GTTCATTTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGA
* * ** * *
17194789 CAGCACTCACGGGGGATCGGG-CTGATCCCCAGCTTGTGCATTCTACCTCTCCGGCCGACTGAGC
65 CAGCACGCAGGGGGGATCGGGTC-GATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGC
* * * *
17194853 GCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17194912 ATACGGAGTT
Statistics
Matches: 685, Mismatches: 122, Indels: 24
0.82 0.15 0.03
Matches are distributed among these distances:
314 3 0.00
315 113 0.16
316 85 0.12
317 478 0.70
318 5 0.01
319 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (318 bp):
GCATATGGAGTTCATTTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGAC
AGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCAC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
GATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGC
GCATTATGCCTCTTCGACTGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
Found at i:17194934 original size:26 final size:26
Alignment explanation
Indices: 17194884--17194935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17194874 GTTGGCTTAG
*
17194884 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17194910 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17194936 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17195622 original size:26 final size:26
Alignment explanation
Indices: 17195593--17195645 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17195583 GTTGACTTAG
* *
17195593 GCATACGGAGTTTATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
17195619 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17195645 G
1 G
17195646 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17195976 original size:159 final size:158
Alignment explanation
Indices: 17195619--17196046 Score: 450
Period size: 159 Copynumber: 2.7 Consensus size: 158
17195609 CCCAATCTAA
* * **
17195619 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
17195684 GCACGCAGAGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTACCCGACCGGCTGAGCGCC
66 GCACGCAGAGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTACCCGACCGGCTCAGCGCC
* *
17195749 TGCACGCCCGTTTCGTGGGTTGGCTTAG
131 TGCACGCCCATTTCGTGGGTTGACTTAG
* ** * *
17195777 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC-G
** * * * *
17195839 ACAGCACGTGGTGGGGGACCGAGCTAATCCCCGGCTTGCGCATTATGCCT-CTCTGGCCGGCTCA
63 ACAGCACGCAG-AGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTAC-CCGACCGGCTCA
* * *
17195903 GTGCTTGCACGCTCATTTCGTGGGTTGACTTAG
126 GCGCCTGCACGCCCATTTCGTGGGTTGACTTAG
** * * *
17195936 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGCTGTGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * ** * * * * *
17196001 GCATGCAGGGGGGATTGGGCCGATCCCCGACTTGTGCATTCTGCCT
66 GCACGCAGAGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCT
17196047 CTCTGGCCGA
Statistics
Matches: 218, Mismatches: 44, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 84 0.39
159 126 0.58
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTACCCGACCGGCTCAGCGCC
TGCACGCCCATTTCGTGGGTTGACTTAG
Found at i:17196142 original size:14 final size:14
Alignment explanation
Indices: 17196123--17196150 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
17196113 GATGCCAACA
17196123 AAAATCTTCTCCAC
1 AAAATCTTCTCCAC
17196137 AAAATCTTCTCCAC
1 AAAATCTTCTCCAC
17196151 TTCGAGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAATCTTCTCCAC
Found at i:17197227 original size:26 final size:26
Alignment explanation
Indices: 17197191--17197243 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17197181 GTTGGCTTAG
*
17197191 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17197217 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17197243 G
1 G
17197244 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17197989 original size:26 final size:26
Alignment explanation
Indices: 17197960--17198012 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17197950 GTTGGCTTAG
17197960 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17197986 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17198012 G
1 G
17198013 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17198836 original size:26 final size:26
Alignment explanation
Indices: 17198806--17198858 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17198796 GTTGACTTAG
17198806 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
17198832 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17198858 G
1 G
17198859 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17199052 original size:26 final size:26
Alignment explanation
Indices: 17199002--17199054 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17198992 GTTGGCTTAG
*
17199002 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17199028 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17199054 G
1 G
17199055 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17205760 original size:171 final size:171
Alignment explanation
Indices: 17205338--17205801 Score: 537
Period size: 171 Copynumber: 2.7 Consensus size: 171
17205328 GCGGGACCGA
* * * *
17205338 CAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCTCATTATTCCTCTCCGACCGGCTCAGC
1 CAGCATGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCACATTATACCTCTCCGACCGGCTGAGC
* * * * * * *
17205403 GCCCGCACACTCATTTCAT-GGTTGACTTTGGCATACGGAGTTTAGTCCCA-GTCTAAGCTCGGA
66 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCAGA
* * *
17205466 TCGGATCAAGGGTTACGGTAGCAGGACCAGCAGCAGGATTGG
130 CCGGATCAAGGGTTACGGCAGCAAGACCAGCAGCAGGATTGG
* * * * *
17205508 CAACATGCAG-GGGGGACCGGGTCGATCC-CTGGCTTGCGCATTCTACCTCTTCGCCCGGCTGAG
1 CAGCATGCAGAGGGGGACCGGGTCGATCCTC-GGCTTGCACATTATACCTCTCCGACCGGCTGAG
* * *
17205571 CGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAG
65 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AG
* ** * **
17205636 -CCGGA-CTGAGGGTTGTGGCAGCAAGACCGGCAGTGGGATTGG
129 ACCGGATC-AAGGGTTACGGCAGCAAGACCAGCAGCAGGATTGG
* * *
17205678 CAGCATGCAGAGGGGGACCGGG-CTGATCCTCGGCTTGCACGTTATGCCTCTCCGGCCGGCTGAG
1 CAGCATGCAGAGGGGGACCGGGTC-GATCCTCGGCTTGCACATTATACCTCTCCGACCGGCTGAG
* *
17205742 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCATGTCTAAGC
65 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17205802 ATATGGAGTT
Statistics
Matches: 247, Mismatches: 39, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
168 1 0.00
169 66 0.27
170 80 0.32
171 99 0.40
172 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (171 bp):
CAGCATGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCACATTATACCTCTCCGACCGGCTGAGC
GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGAC
CGGATCAAGGGTTACGGCAGCAAGACCAGCAGCAGGATTGG
Found at i:17207036 original size:330 final size:333
Alignment explanation
Indices: 17206574--17207196 Score: 791
Period size: 330 Copynumber: 1.9 Consensus size: 333
17206564 GGGTTGCGGT
* *
17206574 AGCAGGATCGGCAGCACGCAGGGGGGACCAGGCCAATCCCCTGCTTGTGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCCTGCTTGCGCATTCTGCCTCTCCGA
* * *
17206639 CCGACTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 CCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* ***
17206704 AAGCCCCTA-CCAGACTGATGGTTCTGGCAGTGGGACC-G-GC-A-GCA-C-GCAGAGGGGGACC
131 AAG-CCCTAGCCAGAC-GAGGGTTCTGGCAGCAAGACCAGAGCGATGCAGCAGCAGAGGGGGACC
* *
17206762 GGG-TCGATCCTCGGCTTGCACATTATTCCTCTTC-GACCGGCTCAGCGCCCGCACACTCATTTC
194 GGGCT-GATCCCCGGCTTGCACATTATGCCTC-TCAGACCGGCTCAGCG-CCGCACACTCATTTC
*
17206825 GTGGGTTGACTTTGGAATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTACGA
256 GTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTACGA
17206890 CAGCAGGACCAGC
321 CAGCAGGACCAGC
* *
17206903 AGCAGGATCGAACAGCACGCAGGGGGGACC-GAGCCGAT-CCCTGACTTGCGCATTCTGCCTCTT
1 AGCAGGATCG-ACAGCACGCAGGGGGGACCAG-GCCAATCCCCTG-CTTGCGCATTCTGCCTCTC
* * * * *
17206966 CGCCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATG
63 CGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
** *
17207031 TCTAAGCCCTAGCTGGACGAGGGTTGTGGCAGCAAGACCAGCAGCGGGATTGGCAGCATGCAGAG
128 TCTAAGCCCTAGCCAGACGAGGGTTCTGGCAGCAAGACCAG-AGC--GA-T-GCAGCA-GCAGAG
* * * * *
17207096 GGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCATACCGGCTGAGCGCCGCACGCTCG
187 GGGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCAGACCGGCTCAGCGCCGCACACTCA
*
17207161 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
252 TTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCC
17207197 ATGCCTAAGC
Statistics
Matches: 248, Mismatches: 28, Indels: 25
0.82 0.09 0.08
Matches are distributed among these distances:
329 37 0.15
330 108 0.44
332 2 0.01
335 1 0.00
338 3 0.01
339 1 0.00
340 45 0.18
341 50 0.20
342 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (333 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCCTGCTTGCGCATTCTGCCTCTCCGA
CCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCTAGCCAGACGAGGGTTCTGGCAGCAAGACCAGAGCGATGCAGCAGCAGAGGGGGACCGG
GCTGATCCCCGGCTTGCACATTATGCCTCTCAGACCGGCTCAGCGCCGCACACTCATTTCGTGGG
TTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTACGACAGCA
GGACCAGC
Found at i:17207145 original size:170 final size:171
Alignment explanation
Indices: 17206740--17207206 Score: 561
Period size: 171 Copynumber: 2.7 Consensus size: 171
17206730 GCAGTGGGAC
* * *
17206740 CGGCAGCACGCAGAGGGGGACCGGG-TCGATCCTCGGCTTGCACATTATTCCTCTTCGACCGGCT
1 CGGCAGCACGCAGAGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCT
* * * * **
17206804 CAGCGCCCGCACACTCATTTCGTGGGTTGACTTTGGAATACGGAGTTCATTCCCA-GTCTAAGAT
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATT-CCATGTCTAAGCC
* *
17206868 CGGATCGGATCAAGGGTTACGACAGCAGGACCAGCAGCAGGAT
129 CAGATCGGATCAAGGGTTACGACAGCAAGACCAGCAGCAGGAT
* * * * * * *
17206911 CGAACAGCACGCAG-GGGGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTTCGCCCGGCT
1 CG-GCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCT
* *
17206975 GAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCC
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * ** * *
17207040 TAGCT-GGA-CGAGGGTTGTGGCAGCAAGACCAGCAGCGGGAT
130 -AGATCGGATCAAGGGTTACGACAGCAAGACCAGCAGCAGGAT
* * *
17207081 TGGCAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTC-TCATACCGGCT
1 CGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTC-GACCGGCT
* *
17207145 GAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGCCTAAGC
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCATGTCTAAGC
17207207 ATATGGAGTT
Statistics
Matches: 250, Mismatches: 40, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
169 64 0.26
170 76 0.30
171 98 0.39
172 12 0.05
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (171 bp):
CGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCA
GATCGGATCAAGGGTTACGACAGCAAGACCAGCAGCAGGAT
Found at i:17208219 original size:159 final size:158
Alignment explanation
Indices: 17207968--17208448 Score: 564
Period size: 157 Copynumber: 3.1 Consensus size: 158
17207958 TCGACCAGAG
* * * * * *
17207968 CGAGGGTTGCGGCAGCAAGATCGACAGCTCGCAG-GGGGGACCAGACCGATCCCCGCTTGCGCAT
1 CGAGGGTTGCGGCTGCAGGATCGAAAGCACGCAGAGGGGGACCGGGCCGATCCCCGCTTGCGCAT
* * * * * * *
17208032 TCT-CCTCTCCGGTCGGCTGAGCGCCCGCATGCCCGTTTCGTCGGTTGGCTTAGGCATAGGGACT
66 TCTGCCTCTACGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
17208096 TCATTCCATGTCTAAGCCCCATCCGGAC
131 TCATTCCATGTCTAAGCCCCATCCGGAC
* *
17208124 CGAGGGTTGTGGCTGCGGGATCGAAAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCA
1 CGAGGGTTGCGGCTGCAGGATCGAAAGCACGCAGAGGGGGACCGGGCCGATCCCCG-CTTGCGCA
* * * * *
17208189 TTATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
65 TTCTGCCTCTACGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * **
17208254 TTCATTCCCA-GCCTAAGATCGGA-CCGGAC
130 TTCATT-CCATGTCTAAG-CCCCATCCGGAC
* * * *
17208283 CGAGGGTTGCGG-TAGCAGGATCGATAGCACGC--AGGGGGATCGAGTCGATCCCCGGCTTGCGC
1 CGAGGGTTGCGGCT-GCAGGATCGAAAGCACGCAGAGGGGGACCGGGCCGATCCCC-GCTTGCGC
* * * *
17208345 ATTCTGCCTCTACGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTAGGCTTTGGCATACAGA
64 ATTCTGCCTCTACGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
17208410 GTTCATTCCATGTCTAAGCCCCAGT-CGGAC
129 GTTCATTCCATGTCTAAGCCCCA-TCCGGAC
17208440 CGAGGGTTG
1 CGAGGGTTG
17208449 TGGTAGTAGG
Statistics
Matches: 273, Mismatches: 42, Indels: 19
0.82 0.13 0.06
Matches are distributed among these distances:
156 33 0.12
157 127 0.47
158 13 0.05
159 95 0.35
160 5 0.02
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (158 bp):
CGAGGGTTGCGGCTGCAGGATCGAAAGCACGCAGAGGGGGACCGGGCCGATCCCCGCTTGCGCAT
TCTGCCTCTACGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCATCCGGAC
Found at i:17208967 original size:158 final size:157
Alignment explanation
Indices: 17208752--17209110 Score: 357
Period size: 156 Copynumber: 2.3 Consensus size: 157
17208742 ACACGCCCCG
** ** * * ** *
17208752 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCCAGACCGAGGGTT
1 TTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGAAACGGACCGAGGGTT
** ** * *
17208816 GTGGCAGTGGGACCGACAGCACGCAAAGGGGGA-CAGAGCCGATCCCCGGCCTGCGCATTATGCC
66 GCAGCAGCAGGACCGACAGCACAC-AAGGGGGATC-G-GCCGATCCCCGGCCTACGCATTATGCC
17208880 TATTCGATCGGCTCAGCGCCCGCACGCTCA
128 TATTCGATCGGCTCAGCGCCCGCACGCTCA
* *
17208910 TTTCGTGGGTTAACTTATGCATAC-GAGTTCATTCC-TAGTCTAAGATCGAAACGGACCGTGGGT
1 TTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGATCGAAACGGACCGAGGGT
* * * * * * * *
17208973 TGCAGTAGCAGGATCGACAGCACACAGGGGGGATCGGGCGATCCTCGGCTTACGCATTCTGCCTC
65 TGCAGCAGCAGGACCGACAGCACACAAGGGGGATCGGCCGATCCCCGGCCTACGCATTATGCCTA
* * * * *
17209038 TTCGGTCGGTTGAGCGCCCGCACGTTCG
130 TTCGATCGGCTCAGCGCCCGCACGCTCA
** *
17209066 TTTCGTGGGTTGGCTTAGGGATACAGAGTTCATTCCATGTCTAAG
1 TTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTAAG
17209111 CATACGGAGT
Statistics
Matches: 163, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
156 67 0.41
157 44 0.27
158 52 0.32
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
TTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGAAACGGACCGAGGGTT
GCAGCAGCAGGACCGACAGCACACAAGGGGGATCGGCCGATCCCCGGCCTACGCATTATGCCTAT
TCGATCGGCTCAGCGCCCGCACGCTCA
Found at i:17209122 original size:26 final size:26
Alignment explanation
Indices: 17209086--17209136 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17209076 TGGCTTAGGG
17209086 ATACAGAGTTCATTCC-ATGTCTAAGC
1 ATACAGAGTTCATTCCTA-GTCTAAGC
*
17209112 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCTAGTCTAAG
17209137 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCTAGTCTAAGC
Found at i:17209826 original size:26 final size:26
Alignment explanation
Indices: 17209790--17209868 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17209780 GTTGACTTAG
*
17209790 GCATACGGAGTTCATCCCCCGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17209816 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17209842 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17209868 G
1 G
17209869 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17210316 original size:158 final size:157
Alignment explanation
Indices: 17209842--17210343 Score: 524
Period size: 158 Copynumber: 3.2 Consensus size: 157
17209832 CCCAGTCTAA
* * **
17209842 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * *
17209906 AGCACACAGGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACATAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CGGTCGGCTGAGCGC
* * *
17209971 CTGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * * *
17210000 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * * * * * *
17210064 AGCACGTAGAGGGTGACCAGGCTGATCCTCGGCTTGCGCATTATGCCTCTCTAGTTGGCTCAACG
65 AGCACATAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC-GGTCGGCTGAGCG
* *
17210129 CCCGCACGCTCATTTCATGGGTTGACTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * *
17210159 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAAACCGAGGGTTGCGATAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * ** *
17210223 GGTACATAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTTTCTCTGCGGTCGACTGAGCGC
65 AGCACATAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CGGTCGGCTGAGCGC
17210288 CCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
17210317 GCTTACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17210344 CATATGGAGT
Statistics
Matches: 270, Mismatches: 66, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 8 0.03
158 141 0.52
159 116 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACATAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17211345 original size:11 final size:11
Alignment explanation
Indices: 17211329--17211390 Score: 92
Period size: 11 Copynumber: 5.6 Consensus size: 11
17211319 CACCATCGCC
17211329 GAGCATCGCTG
1 GAGCATCGCTG
17211340 GAGCATCG-TCG
1 GAGCATCGCT-G
17211351 GAGCATCGCTG
1 GAGCATCGCTG
17211362 GAGCATCG-TCG
1 GAGCATCGCT-G
17211373 GAGCATCGCTG
1 GAGCATCGCTG
17211384 GAGCATC
1 GAGCATC
17211391 ACCAGAGAGC
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
10 2 0.04
11 43 0.91
12 2 0.04
ACGTcount: A:0.19, C:0.27, G:0.35, T:0.18
Consensus pattern (11 bp):
GAGCATCGCTG
Found at i:17211355 original size:22 final size:22
Alignment explanation
Indices: 17211329--17211390 Score: 124
Period size: 22 Copynumber: 2.8 Consensus size: 22
17211319 CACCATCGCC
17211329 GAGCATCGCTGGAGCATCGTCG
1 GAGCATCGCTGGAGCATCGTCG
17211351 GAGCATCGCTGGAGCATCGTCG
1 GAGCATCGCTGGAGCATCGTCG
17211373 GAGCATCGCTGGAGCATC
1 GAGCATCGCTGGAGCATC
17211391 ACCAGAGAGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.19, C:0.27, G:0.35, T:0.18
Consensus pattern (22 bp):
GAGCATCGCTGGAGCATCGTCG
Found at i:17212010 original size:26 final size:26
Alignment explanation
Indices: 17211974--17212026 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17211964 GCTGACTTAG
*
17211974 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
17212000 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17212026 G
1 G
17212027 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17212378 original size:159 final size:158
Alignment explanation
Indices: 17212000--17212493 Score: 462
Period size: 159 Copynumber: 3.1 Consensus size: 158
17211990 TCCAGTCTAA
* * *
17212000 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGTTTGTAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGG-TTGTAGCAGTAGGATCGACA
* * * * * *
17212065 GCACACAG-GGGGGATCG-GGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCA
65 GCACGCGGAGGGGGACCGAGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* *
17212128 CCAGCATGC-CTGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* *** * * * *
17212158 GCATAGGGAGTTCATT-CCATGTCTAACCCCCAG-TCGAACCGAGGGTTGTGGCAGTGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAA-GATCAGATCGGACCGA-GGTTGTAGCAGTAGGATCGA
* * * * * *
17212221 CAGCACGCGGAGGGGGACCGAATCGATCCTCGGCTTGCGCATTATGCCTATCCGATCGGCTCAGT
63 CAGCACGCGGAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
*
17212286 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
17212317 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGAGTTGCAGTAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG-GTTGTAGCAGTAGGATCGACA
* * * * * ** * * *
17212382 GCGCGTAGGA-GGGGACC-AGGTCGGTCCCCAGCTTGCGCATTCTACCTCTTAGGTCGGTTGAGG
65 GCACG-CGGAGGGGGACCGA-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
*
17212445 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17212476 GCATATGGAGTTCCTTCC
1 GCATACGGAGTTCATTCC
17212494 ATGCCTAAGC
Statistics
Matches: 267, Mismatches: 58, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 52 0.19
159 204 0.76
160 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGTTGTAGCAGTAGGATCGACAG
CACGCGGAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17213311 original size:354 final size:348
Alignment explanation
Indices: 17212412--17213561 Score: 1127
Period size: 354 Copynumber: 3.3 Consensus size: 348
17212402 TCGGTCCCCA
* * * * * * * *
17212412 GCTTGCGCATTCTACCTCTTAGGTCGGTTGAGGGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTATGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * *
17212477 CATATGGAGTTCCTTC-CATGCCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCTGACCGGAC
66 CATACGGAGTTCATCCTCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-TGACCGGAC
* *
17212541 TGAGGGTTGCGGCAGTAGGACTAGCAGCAGGATCGACAGCATGCAGAGGGACCGGGCTGATCCCC
129 TGAGGGTTGCGGCAGTAGGA-TCG-A-CA-G--C-AC-GCA---AGGGGGACCGGGCTGATCCCC
*
17212606 GGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAG
183 GACTTGCGCATTCTGCCTCT-CGATCGGTTGAGCGCCCGCACG-TCGTTTCGTGGGTTGGCTTAG
* * * *
17212671 GCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACCGAACTGGCA
246 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC-AGCGGAC-GGCA
* * * **
17212736 GCAGGATCGATAGC-TCGCAGAGGGGGA-TCGAGCTGATCCCCA
309 GC-GGAT-GGTAGCAT-ACAGAGGGGGACT-GGGCTGATCCCTG
* * * ** * * ** *** * *
17212778 GCTTACGCATTATGCCTCTAT-GACCGGC--ATTTTCGGTC-GGCT-G-AGCGCCCGCTGGCTTA
1 GCTTGCGCATTATGCCTCT-TCGGCCGGCTGAGTGCCCG-CACGCTCGTTTCGTGGGTTGACTTA
* * *
17212837 GGCATACGGAGTTCATCCCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCGGA
64 GGCATACGGAGTTCATCCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-TGACCGGA
* *
17212902 CCGAGGGTTGCGGCAGTAGGATCGACAGCACGTC-GGGGGGACCGGGCTGATCCCCGACTTGCGC
128 CTGAGGGTTGCGGCAGTAGGATCGACAGCACG-CAAGGGGGACCGGGCTGATCCCCGACTTGCGC
* * * * * *
17212966 ATTTTGCCTCTACGATCGGGTAAGCGCCCGTACGCTAGTTTCGTGTGTTGGCTTAGGCATACGGA
192 ATTCTGCCTCT-CGATCGGTTGAGCGCCCGCACG-TCGTTTCGTGGGTTGGCTTAGGCATACGGA
* *
17213031 GTTCATCCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAGGACGGCAGCGGGATAGG
255 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC-GGACGGCAGC-GGAT-GG
*
17213096 TAGCATATAGAGGGGGACTGGGCTGATCCCTG
317 TAGCATACAGAGGGGGACTGGGCTGATCCCTG
*
17213128 GCTTGCGCATTATGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATTATGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * *
17213193 CAAACAGAGTTCATCCTCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACT
66 CATACGGAGTTCATCCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATT-GACCGGACT
* *
17213258 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCT-ATCCCCGACTTACGCAT
130 GAGGGTTGCGGCAGTAGGATCGACAGCACGCAAGGGGGACCGGG-CTGATCCCCGACTTGCGCAT
* * * * *
17213322 TCTACCCCTCTGACCGGTTGAGCACCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATACAGAGT
194 TCTGCCTCTC-GATCGGTTGAGCGCCCGCACGT-CGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* **
17213387 TCATTTCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAGC-G--GG-A-C---TGGTAGCA
257 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGACGGCAGCGGATGGTAGCA
* ** *
17213444 CACAGAGGGGGACCAGGCCGAT-CCTCG
322 TACAGAGGGGGACTGGGCTGATCCCT-G
* * * *
17213471 GCTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACACTCATTTCGTGGGTTGACTTATG
1 GCTTGCGCATTATGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
17213536 CATACGGATTTCATTCCT-AGTCTAAG
66 CATACGGAGTTCA-TCCTCAGTCTAAG
17213562 ATCAGATTGG
Statistics
Matches: 655, Mismatches: 109, Indels: 63
0.79 0.13 0.08
Matches are distributed among these distances:
342 3 0.00
343 103 0.16
344 5 0.01
348 1 0.00
349 1 0.00
350 62 0.09
351 129 0.20
352 8 0.01
353 4 0.01
354 212 0.32
355 5 0.01
356 1 0.00
358 1 0.00
359 2 0.00
360 1 0.00
361 2 0.00
362 84 0.13
363 3 0.00
364 6 0.01
365 1 0.00
366 20 0.03
367 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (348 bp):
GCTTGCGCATTATGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATCCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGACCGGACTG
AGGGTTGCGGCAGTAGGATCGACAGCACGCAAGGGGGACCGGGCTGATCCCCGACTTGCGCATTC
TGCCTCTCGATCGGTTGAGCGCCCGCACGTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGACGGCAGCGGATGGTAGCATACA
GAGGGGGACTGGGCTGATCCCTG
Found at i:17213539 original size:159 final size:157
Alignment explanation
Indices: 17213259--17213717 Score: 406
Period size: 159 Copynumber: 2.9 Consensus size: 157
17213249 GACTGGACTG
* * * * * * *
17213259 AGGGTTGCGGCAGCAGGATCGACAGCACGCA-AGGGGGACCGGGCCTATCCCCGACTTACGCATT
1 AGGGTTGAGGCAGCAGGATCGACAGCACACAGAGGGGGA-CAGGCCGATCCTCGGCTTGCGCATT
* * * * * * * * * *
17213323 CTACCCCTCTGACCGGTTGAGCACCCGCAC-GTCCGTTTCGTGGGTTGGCTTAGGCATACAGAGT
65 ATGCCTCTCCGACCAGCTAAG-ACCCGCACACT-CATTTCGTGGGTTGGCTTAGGCATACGGAGT
* *
17213387 TCATTTCATGTCTAAGCCCCA-ATCGGACCG
128 TCATTTCATGTCTAAG-ACCAGATCGGACCA
* * **
17213417 AGGGTTGTGGCAGCGGGA-CTGGTAGCACACAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCAT
1 AGGGTTGAGGCAGCAGGATC-GACAGCACACAGAGGGGGA-CAGGCCGATCCTCGGCTTGCGCAT
* * * * * * * *
17213481 TATGCCTCTTCGGCCGGCTCAGTGCCCGCACACTCATTTCGTGGGTTGACTTATGCATACGGATT
64 TATGCCTCTCCGACCAGCTAAG-ACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* * *
17213546 TCA-TTCCTAGTCTAAGATCAGATTGGACCA
128 TCATTTCAT-GTCTAAGACCAGATCGGACCA
* * * ** * *
17213576 AGGGTTGAGGTAGCAGGATCGACAGCACGCAGTGGGGGATGGGCCGATCCTTGGCTTGCGCATTC
1 AGGGTTGAGGCAGCAGGATCGACAGCACACAGAGGGGGACAGGCCGATCCTCGGCTTGCGCATTA
* * *
17213641 TGCCTCTCCGACCAGCTAAGACCCGCACGCTCGTTTCGTGGGTTGGCTGAGGCATACGGAGTTCA
66 TGCCTCTCCGACCAGCTAAGACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
*
17213706 TTCCATGTCTAA
131 TTTCATGTCTAA
17213718 CCATACGGGG
Statistics
Matches: 239, Mismatches: 55, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 45 0.19
158 71 0.30
159 121 0.51
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGGTTGAGGCAGCAGGATCGACAGCACACAGAGGGGGACAGGCCGATCCTCGGCTTGCGCATTA
TGCCTCTCCGACCAGCTAAGACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTTCATGTCTAAGACCAGATCGGACCA
Found at i:17213730 original size:26 final size:26
Alignment explanation
Indices: 17213693--17213743 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17213683 TTGGCTGAGG
17213693 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
*
17213719 CATACGGGGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
17213744 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:17214609 original size:26 final size:26
Alignment explanation
Indices: 17214573--17214625 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17214563 GTTGACTTAG
17214573 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17214599 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17214625 G
1 G
17214626 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17214844 original size:21 final size:21
Alignment explanation
Indices: 17214820--17214859 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
17214810 ACGGGACTGG
*
17214820 CAGCACGCAGAGGGGGACCGA
1 CAGCACGCAGAGAGGGACCGA
*
17214841 CAGCATGCAGAGAGGGACC
1 CAGCACGCAGAGAGGGACC
17214860 AGGCGGATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.28, G:0.40, T:0.03
Consensus pattern (21 bp):
CAGCACGCAGAGAGGGACCGA
Found at i:17215133 original size:26 final size:26
Alignment explanation
Indices: 17215096--17215148 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17215086 TTTGGCTTAG
*
17215096 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17215122 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17215148 G
1 G
17215149 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17216027 original size:26 final size:26
Alignment explanation
Indices: 17215990--17216042 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17215980 GTTGACTTAG
*
17215990 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17216016 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17216042 G
1 G
17216043 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17216250 original size:21 final size:21
Alignment explanation
Indices: 17216225--17216264 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
17216215 AGGGTTCTGG
17216225 CAGCACGCAGAGGGGGACCGA
1 CAGCACGCAGAGGGGGACCGA
* *
17216246 CAGCATGCGGAGGGGGACC
1 CAGCACGCAGAGGGGGACC
17216265 AAGCCGATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.45, T:0.03
Consensus pattern (21 bp):
CAGCACGCAGAGGGGGACCGA
Found at i:17216925 original size:427 final size:432
Alignment explanation
Indices: 17216101--17216932 Score: 1113
Period size: 427 Copynumber: 1.9 Consensus size: 432
17216091 GGGAACGGGC
*
17216101 CGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAACACCCGCACACCCATTTCGTGGGT
1 CGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAACACCCGCACACCCATTTCATGGGT
* * ** *
17216166 TGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTCTGGCAGCAC
66 TGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAAACCGAGAGTTCTGG-AGCAC
* * * *
17216231 GCAGAGGGGGACCGACAGCATGCGGAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTATGCCTT
130 GC-----GGGACCGACAGCACGCAGAGGGGGACCAAGCCAATCCCCAGCTTGCGCATTATGCCTA
* * * ** * *
17216296 TTCGACTGGCTCAGCGCCCGCACGTTCATTTCGTGGGTTGACTTATGCATACGGAGTTCTTTCCC
190 TCCGACCGGCTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
17216361 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCGGG
255 AATCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCGGA
* * *
17216426 CTGATCCCCGGCTTGCGCATTCTACCTTTCCAGTCGACTGAGCACCCGCACTCTCGTTTCGTGGG
320 CCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGACTGAGCACCCGCACTCTCGTTTCGTGGG
17216491 TTTGGCTTAGGCATATGAAGATGTGCTTGAACCAACCGACCACCCGTT
385 TTTGGCTTAGGCATATGAAGATGTGCTTGAACCAACCGACCACCCGTT
* * * * * *
17216539 CGATCCCCGGCTTGCGCATTCTTCCTCTCCGTTCGGCTGAGCACCCGCACGCCCGTTTCATGGGT
1 CGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAACACCCGCACACCCATTTCATGGGT
* *
17216604 TGGCTTAGGCATAGGGAGTTCATTCCATGCCTAA-CCCCAGCCAAATCGAGAGTTGT-G-GCA-G
66 TGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAAACCGAGAGTTCTGGAGCACG
* ** *
17216665 C-GGACCGACAGCACGTAGAGGGGGA-CTGGACCAATCCCCGGCTTGCGCATTATGCCTATCCGA
131 CGGGACCGACAGCACGCAGAGGGGGACCAAG-CCAATCCCCAGCTTGCGCATTATGCCTATCCGA
* *
17216728 CCGGCTCAACGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
195 CCGGCTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
* * * * *
17216793 AAGATTGAACCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCTGGGGGGTATCGGACCGA
260 AAGATCGAACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGG-ATCGGACCGA
* ** *
17216858 TCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCA-TGCTCGTTTCGTGGG-TT
324 TCCCCGGCTTGCGCATTCTACCTCTCCAGCCGACTGAGCACCCGCACT-CTCGTTTCGTGGGTTT
17216921 GGCTTAGGCATA
388 GGCTTAGGCATA
17216933 CGGAGTTCAT
Statistics
Matches: 345, Mismatches: 46, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
426 2 0.01
427 169 0.49
428 61 0.18
433 2 0.01
434 3 0.01
436 1 0.00
437 17 0.05
438 90 0.26
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23
Consensus pattern (432 bp):
CGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAACACCCGCACACCCATTTCATGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAAACCGAGAGTTCTGGAGCACG
CGGGACCGACAGCACGCAGAGGGGGACCAAGCCAATCCCCAGCTTGCGCATTATGCCTATCCGAC
CGGCTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
AGATCGAACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCGGACCGATC
CCCGGCTTGCGCATTCTACCTCTCCAGCCGACTGAGCACCCGCACTCTCGTTTCGTGGGTTTGGC
TTAGGCATATGAAGATGTGCTTGAACCAACCGACCACCCGTT
Found at i:17216985 original size:159 final size:159
Alignment explanation
Indices: 17216692--17216985 Score: 408
Period size: 159 Copynumber: 1.8 Consensus size: 159
17216682 GAGGGGGACT
* *
17216692 GGACCAATCCCCGGCTTGCGCATTATGCCTATCCGACCGGCTCAACGCCCGCACACTCGTTTTGT
1 GGACCAATCCCCGGCTTGCGCATTATGCCTATCCGACCGACTCAACGCCCGCACACTCGTTTCGT
* ** *
17216757 GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGAACCGGACCGAGGGTTGCGGTA
66 GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAAAGTTACGGTA
17216822 GTAGGATCGACAGCACGCTGGGGGGTATC
131 GTAGGATCGACAGCACGCTGGGGGGTATC
* * * * * * * **
17216851 GGACCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCGT
1 GGACCAATCCCCGGCTTGCGCATTATGCCTATCCGACCGACTCAACGCCCGCACACTCGTTTCGT
* * * * *
17216916 GGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATCGGATCGGACCGAAAGTTACGGTG
66 GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAAAGTTACGGTA
17216981 GTAGG
131 GTAGG
17216986 TCCAGCAGTA
Statistics
Matches: 115, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
159 115 1.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GGACCAATCCCCGGCTTGCGCATTATGCCTATCCGACCGACTCAACGCCCGCACACTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAAAGTTACGGTA
GTAGGATCGACAGCACGCTGGGGGGTATC
Found at i:17217297 original size:26 final size:26
Alignment explanation
Indices: 17217268--17217320 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17217258 GTCGACTTAG
* *
17217268 GCATACGGAGTTCATCCCCATTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
17217294 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
17217320 G
1 G
17217321 ATCAACCGCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:17217696 original size:159 final size:157
Alignment explanation
Indices: 17217301--17217791 Score: 439
Period size: 159 Copynumber: 3.1 Consensus size: 157
17217291 TAAGCATAAG
* *
17217301 GAGTTCATTCCCAGTCTAAGATCA-ACCGCGACCGAGGGTTGCGGCAGCA-GATCGACAGCACG-
1 GAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGA
* * * * *
17217363 T-AGGGGGACCAGGCCGATCTTCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCTCCGCACG
65 TGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCTCCGCACG
* **
17217427 CCCATTTCATGGGTTGCTTAGGCATAGG
130 CCCATTTCATGGGTTGCTTAGACATACA
** * * * *
17217455 GAGTTCATT-CCATGTCTAAGCCCCAG-CCGGA-CGAGGGTTGTGGCAGCGGGACCGATAGCAC-
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACG
* * * *
17217516 ACAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTAC-GCCTCTTCGGCCAGCTCAG-TGCTC
64 A-TGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATT-CTGCCTCTCCGGCCAGCTGAGCT-C-C
* * *
17217579 GCACGCTCATTTCGTGGGTTGACTTATACATACA
125 GCACGCCCATTTCATGGGTTG-CTTAGACATACA
* * *
17217613 GAGTTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGATAGTACGAT
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGAT
* * * * * ** * * *
17217678 GGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCC-CACAC
66 GAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCTCCGCACGC
** *
17217742 ACTCATTTTTTGGGTTAGCTTAGGCATACA
131 -C-CATTTCATGGGTT-GCTTAGACATACA
17217772 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
17217792 CATATAGAGT
Statistics
Matches: 265, Mismatches: 51, Indels: 37
0.75 0.14 0.10
Matches are distributed among these distances:
153 18 0.07
154 28 0.11
155 5 0.02
156 45 0.17
157 28 0.11
158 32 0.12
159 107 0.40
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGAT
GAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCTCCGCACGC
CCATTTCATGGGTTGCTTAGACATACA
Found at i:17217801 original size:26 final size:26
Alignment explanation
Indices: 17217765--17217817 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17217755 GTTAGCTTAG
17217765 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
17217791 GCATATAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17217817 G
1 G
17217818 ATTTTGTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17224836 original size:26 final size:26
Alignment explanation
Indices: 17224800--17224852 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17224790 GTTGGCTTAG
17224800 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17224826 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17224852 G
1 G
17224853 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17225477 original size:159 final size:159
Alignment explanation
Indices: 17225236--17225580 Score: 401
Period size: 159 Copynumber: 2.2 Consensus size: 159
17225226 CATGGGGGGA
* * * * **
17225236 GATCCCTGGCTTACACATTCTGCCTCT-CATTCAGCTGAGCACCTGAATGCCTGTTTCATTTGTT
1 GATCCCCGGCTTACACATTCTGCCTCTCCAGTCAGCTCAGCACCCGAATGCCTGTTTCATGGGTT
* * * *
17225300 GGATGAGGCATAGGGAGTTCATTC-CATGTCTAAGCCCCAGTCAGACCGAA-AGTTGTGGCAGCG
66 GAATGAGGCATAGGGAGTTCATTCTCA-GTCTAAG-ACCAGACAGAACGAAGAGTTGTGGCAGCG
* * *
17225363 GGATTGACAGCATGC-AGAGGGGGACCAGGCT
129 GGATCGACAGCACGCAAG-GGGGGACCAGGAT
* * ** * *
17225394 GATCCCCGGCTTACGCATTATGCCTCTCCAGTCAGCTCAGTGCCCGAATGCTTGTTTCGTGGGTT
1 GATCCCCGGCTTACACATTCTGCCTCTCCAGTCAGCTCAGCACCCGAATGCCTGTTTCATGGGTT
* * * * * *
17225459 GAATTAGGCATATGGAGTTCATTCTCAGTCTAAGATCAGACCGAACTAAGGGTTGTGGCAGCGGG
66 GAATGAGGCATAGGGAGTTCATTCTCAGTCTAAGACCAGACAGAACGAAGAGTTGTGGCAGCGGG
17225524 ATCGACAGCACGCAAGGGGGGACCAGGAT
131 ATCGACAGCACGCAAGGGGGGACCAGGAT
*
17225553 AATCCCCGGCTTACACATTCTGCCTCTC
1 GATCCCCGGCTTACACATTCTGCCTCTC
17225581 TGCTAGGCTC
Statistics
Matches: 155, Mismatches: 28, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
158 33 0.21
159 118 0.76
160 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (159 bp):
GATCCCCGGCTTACACATTCTGCCTCTCCAGTCAGCTCAGCACCCGAATGCCTGTTTCATGGGTT
GAATGAGGCATAGGGAGTTCATTCTCAGTCTAAGACCAGACAGAACGAAGAGTTGTGGCAGCGGG
ATCGACAGCACGCAAGGGGGGACCAGGAT
Found at i:17225683 original size:11 final size:11
Alignment explanation
Indices: 17225665--17225694 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
17225655 TTCCCGGGGT
17225665 ACCATCGTCGG
1 ACCATCGTCGG
*
17225676 AGCATCGTCGG
1 ACCATCGTCGG
17225687 ACCATCGT
1 ACCATCGT
17225695 TAGAGAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (11 bp):
ACCATCGTCGG
Found at i:17226325 original size:25 final size:26
Alignment explanation
Indices: 17226289--17226340 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17226279 GTTGACTTAG
*
17226289 GCATACAAAGTTCA-TCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
*
17226314 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
17226340 G
1 G
17226341 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:17226793 original size:26 final size:26
Alignment explanation
Indices: 17226755--17226808 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
17226745 GGTTGGCTTT
17226755 AGCATACACAGTTCATT-CCATGTCTA
1 AGCATACACAGTTCATTCCCA-GTCTA
**
17226781 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACACAGTTCATTCCCAGTCTA
17226807 AG
1 AG
17226809 ATTGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
AGCATACACAGTTCATTCCCAGTCTA
Found at i:17227013 original size:26 final size:26
Alignment explanation
Indices: 17226964--17227016 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17226954 GTTGACTTAG
* *
17226964 GCATACGGAGTTCATCCCTGGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
17226990 GCATACGAAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCA-TCCCTAGTCTAA
17227016 G
1 G
17227017 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:17228094 original size:25 final size:26
Alignment explanation
Indices: 17228028--17228101 Score: 96
Period size: 26 Copynumber: 2.9 Consensus size: 26
17228018 ACTTAGGCAT
17228028 ACGGAGTTCATCCCCAGTCTAAGCAC
1 ACGGAGTTCATCCCCAGTCTAAGCAC
* * *
17228054 ACGGAATTCATCCCCAATCTAAGCAT
1 ACGGAGTTCATCCCCAGTCTAAGCAC
* *
17228080 A-TGAGTTCATTCCCAGTCTAAG
1 ACGGAGTTCATCCCCAGTCTAAG
17228102 ATTGGACCGG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 17 0.41
26 24 0.59
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (26 bp):
ACGGAGTTCATCCCCAGTCTAAGCAC
Found at i:17228446 original size:26 final size:26
Alignment explanation
Indices: 17228416--17228468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17228406 GTTGACTTAG
17228416 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17228442 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17228468 G
1 G
17228469 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17228896 original size:158 final size:158
Alignment explanation
Indices: 17228442--17228943 Score: 528
Period size: 158 Copynumber: 3.2 Consensus size: 158
17228432 CCCAGTCTAA
* * * * * * * * *
17228442 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTACGATAGTAGGATTGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGAACGAGGGTTGCGGTAGCAAGATTGAC
* * * *
17228506 AGCACGT-AGGGGGAACCGGGCCGATCCCTGGCTTACGCATTCTT-CCTCTTCGGTCGGTTGAGC
65 AGCACATAAGGGGG-ACCGGGCCGATCCCCGGCTTGCGCATT-TTGCCTCTTCGGCCGGTTGAGC
* * * * *
17228569 ACCCACATGCCCATTTTGTGGGTTGGCTTAG
128 GCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * **
17228600 GCATAAGGAGTTCATTCCATGTCTAAGCCCAAGCCAGAATGAGGGTTGTGGTAGCGAGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGAACGAGGGTTGCGGTAGCAAGATTGACA
* * * * * * * *
17228665 GTA-AGTAGAGGGGGACCAGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGCG
66 GCACA-TA-AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCGGTTGAGCG
* * * *
17228729 CCCGCACGCTCGTTTCATGGGTTGACTTAT
129 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
* *
17228759 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGAACGAGGGTTGCGGTAGCAAGATTGAC
* *
17228823 AGCACATAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTTTGCCTCTTCGACCGGTTGAGCGC
65 AGCACATAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCGGTTGAGCGC
17228888 CCACACGCTCGTTTCGTGGGTTGGCTTAG
130 CCACACGCTCGTTTCGTGGGTTGGCTTAG
17228917 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17228944 CATACAGCGT
Statistics
Matches: 273, Mismatches: 63, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 144 0.53
159 113 0.41
160 10 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGAACGAGGGTTGCGGTAGCAAGATTGACA
GCACATAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCGGTTGAGCGCC
CACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17228955 original size:26 final size:26
Alignment explanation
Indices: 17228917--17228969 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17228907 GTTGGCTTAG
*
17228917 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17228943 GCATACAGCGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17228969 G
1 G
17228970 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17229855 original size:26 final size:26
Alignment explanation
Indices: 17229826--17229878 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17229816 GTTGACTTAG
*
17229826 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
17229852 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17229878 G
1 G
17229879 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17230852 original size:26 final size:26
Alignment explanation
Indices: 17230816--17230867 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17230806 GTTGACTTAG
17230816 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17230842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17230868 TATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17231316 original size:158 final size:157
Alignment explanation
Indices: 17230842--17231334 Score: 483
Period size: 158 Copynumber: 3.1 Consensus size: 157
17230832 CCCAGTCTAA
* * * * * * *
17230842 GCATACGGAGTTCATTCCCAGTCTAATATCAGACCAGACTGAGGGTTGCGGCAACAAGATCGACA
1 GCATACGGAGTTCATTCCCAATTTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATA
* * * * ***
17230907 GCACGTAGGGGGGACCGGGTCGATCCCCGGTTTGTGCATTCTTCCTTTCTGGCAGGCTGAGCGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTTCCAATC-GGCTGAGCGCC
17230972 CACACGC-CTGTTTTGTGGGTTGGCTTAG
130 CACACGCTC-GTTTTGTGGGTTGGCTTAG
* ** * *
17231000 GCATAGGGAGTTCATT-CC-ATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGCAGC-GAGACC
1 GCATACGGAGTTCATTCCCAAT-T-TAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAG-GATC
* * * * ** * * *
17231061 GGTAACACGCAGAGGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTATCCGATCGGCTCA
62 GATAGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCT-TCCAATCGGCTGA
* ** * * *
17231126 ACGCCTGCACACTCATTTTGTGGGTTGACTTAG
125 GCGCCCACACGCTCGTTTTGTGGGTTGGCTTAG
* * *
17231159 GCATACGGAGTTCATTCCCAATTTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATTTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATA
* *
17231224 GCACGTAGGGGGTACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAATCGGTTGAGCGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCT-TCCAATCGGCTGAGCGCC
* **
17231289 CATACGCTCGTTTCATGGGTTGGCTTAG
130 CACACGCTCGTTTTGTGGGTTGGCTTAG
*
17231317 GCATACGGAGTTAATTCC
1 GCATACGGAGTTCATTCC
17231335 ATGTCTAAGC
Statistics
Matches: 261, Mismatches: 63, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 135 0.52
159 113 0.43
160 8 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATTTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATA
GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTTCCAATCGGCTGAGCGCCC
ACACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:17231723 original size:26 final size:26
Alignment explanation
Indices: 17231694--17231746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17231684 GTTGACTTAG
17231694 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17231720 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17231746 G
1 G
17231747 ATCAGGCCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17232174 original size:158 final size:155
Alignment explanation
Indices: 17231720--17232221 Score: 555
Period size: 158 Copynumber: 3.2 Consensus size: 155
17231710 CCCAGTCTAA
* ** *
17231720 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGGCCGAATAGAGGGTTACGACAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-GCCGGACCGAGGGTTACGACAGCAGGATCGAC
* * * *
17231784 AGCATGCAGGGGGGACCGGGCCGATTCCTGACTTGCGTATTCTGCCTCTCCGACCGACTGAGTGC
64 AGCATGCAGGGGGGACCGGGTCGA-TCCTG-CTTGCGCATTCTGCCTCTCTGACCGACTGAGCGC
* *
17231849 CTGCACGC-CTATTTCATGGGTTGGCTTAG
127 CCGCACGCTC-ATTTCGTGGGTTGGCTTAG
** * * *
17231878 GCATA-GGTAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCGGGATCGAC
1 GCATACGG-AGTTCATTCCATGTCTAAG-ATCAGCCGGACCGAGGGTTACGACAGCAGGATCGAC
* * * *
17231942 AGCATGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCT-TCGACCGGCTCATC
64 AGCATGCAG-GGGGGACCGGGTCGATCCT--GCTTGCGCATTCTGCCTCTCT-GACCGACTGAGC
* * * *
17232006 ACCCGCACGCTCATTTTGTGGGTTGACTTAT
125 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
17232037 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGATGGTTACGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-CCGGACCGAGGGTTACGACAGCAGGATCGAC
* * * *
17232101 AGCACGAAGGGGGGACTGGGTCGATCCGTAGCTTGCGCATTCTGCCTCTCTGACCGACTGAGGGC
64 AGCATGCAGGGGGGACCGGGTCGATCC-T-GCTTGCGCATTCTGCCTCTCTGACCGACTGAGCGC
*
17232166 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CCGCACGCTCATTTCGTGGGTTGGCTTAG
17232195 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17232222 CATACAGAGT
Statistics
Matches: 285, Mismatches: 45, Indels: 28
0.80 0.13 0.08
Matches are distributed among these distances:
157 8 0.03
158 153 0.54
159 117 0.41
160 7 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGCCGGACCGAGGGTTACGACAGCAGGATCGACAG
CATGCAGGGGGGACCGGGTCGATCCTGCTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGGCTTAG
Found at i:17232231 original size:26 final size:26
Alignment explanation
Indices: 17232195--17232247 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17232185 GTTGGCTTAG
*
17232195 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
17232221 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17232247 G
1 G
17232248 ATTTTGAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17232610 original size:26 final size:26
Alignment explanation
Indices: 17232580--17232632 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17232570 GTTGACTTAG
* *
17232580 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
17232606 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17232632 G
1 G
17232633 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17238795 original size:26 final size:26
Alignment explanation
Indices: 17238759--17238811 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17238749 GTTGGCTTAG
*
17238759 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17238785 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17238811 G
1 G
17238812 ATAAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17239147 original size:26 final size:26
Alignment explanation
Indices: 17239111--17239160 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17239101 TTGACTTCGA
*
17239111 CATATGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
17239137 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATCCCCAGTCTA
17239161 TGATCGGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:17239343 original size:338 final size:342
Alignment explanation
Indices: 17238709--17239344 Score: 734
Period size: 338 Copynumber: 1.8 Consensus size: 342
17238699 TACGTATTCT
* * * *
17238709 GCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTGTGGGTTGACTTAGACATACGGAGTTCAT
* *
17238774 TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAAGACTGAACTGAGGGTTACGGCAG
66 CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAAGACTGAACCGAGGGTTACGGCAG
* *
17238839 TAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGGACCGGGCCGATCCCCGGCTTGCACATTC
131 TAGGACCAG-AGC--GAT----A-CACGCAGGGGGGGACCGGGCCGATCCCCGGCCTGCACATTA
* * * * * *
17238904 TGCCTCTCTAGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
188 TGCCTCTCGAGCCGGTTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * *
17238969 ATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGACAGCGGGATCCCCGG
253 ATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGTAGGACCGACAGCGGGATCCCCGG
17239034 CTTGCGCATTATGCCTCTTCGGCCA
318 CTTGCGCATTATGCCTCTTCGGCCA
* * *
17239059 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTCGACATATGGAGTTCA
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTT-GTGGGTTGACTTAGACATACGGAGTTCA
* * ** * *
17239124 TCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGA-TCGGACCGATGGTTACGG
65 T-CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAAGACT-GAACCGAGGGTTACGG
* * * **
17239187 CAGTAGGATC-G-GC-AT-CATGCA-GGGGGGACCGGGTCGATCCCCGGCCTGCGTATTATGCCT
128 CAGTAGGACCAGAGCGATACACGCAGGGGGGGACCGGGCCGATCCCCGGCCTGCACATTATGCCT
* * * *
17239247 CTCCGA-CTGGTTCAGCGCCTGCACGCTCATTTTGTGGGTTGACTTGGGCATACGAAGTTCATTC
193 CT-CGAGCCGGTTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-
** *
17239311 CCA-GTCTAAG-ATCGGACCGGACCGAAGGTTGTGG
256 CCATGTCTAAGCCCCAG-CCGGACCGAAGGTTGTGG
17239345 TAGCAGGATT
Statistics
Matches: 242, Mismatches: 38, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
337 2 0.01
338 106 0.44
339 10 0.04
345 2 0.01
348 2 0.01
350 35 0.14
351 82 0.34
352 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (342 bp):
GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTGTGGGTTGACTTAGACATACGGAGTTCAT
CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAAGACTGAACCGAGGGTTACGGCAG
TAGGACCAGAGCGATACACGCAGGGGGGGACCGGGCCGATCCCCGGCCTGCACATTATGCCTCTC
GAGCCGGTTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATG
TCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGTAGGACCGACAGCGGGATCCCCGGCTTGCGCA
TTATGCCTCTTCGGCCA
Found at i:17239429 original size:158 final size:158
Alignment explanation
Indices: 17239136--17239637 Score: 535
Period size: 158 Copynumber: 3.2 Consensus size: 158
17239126 CCCAGTCTAA
* * * ** *
17239136 GCATACGGAGTTCATTCCCA-GTCTATGATCGGATCGGACCGATGGTTACGGCAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCAGGATCGGC
* * * * * * * * * * *
17239200 ATCATGCAGGGGGGACCGGGTCGATCCCCGGCCTGCGTATTATGCCTCTCCGACTGGTTCAGCGC
65 AACACGCGGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGC
* * * *
17239265 CTGCACGCTCATTTTGTGGGTTGACTTGG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
17239294 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAAGGTTGTGGTAGCAGGATTGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCAGGATCGGC
* *
17239358 AACACGCGGGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTTCGACCGGCTAAGCGC
65 AACACGCGGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGC
* *
17239423 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * *
17239452 GCACAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACTGAGGGTTGTGGCAGC-GAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAAGGTTGTGGCAGCAG-GATCGG
* ** * ** *
17239515 CAGCACATAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
64 CAACAC-GCGGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGC
*
17239580 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
17239611 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17239638 CATATGGAGT
Statistics
Matches: 287, Mismatches: 53, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
157 6 0.02
158 178 0.62
159 103 0.36
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCAGGATCGGCA
ACACGCGGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:17239751 original size:11 final size:11
Alignment explanation
Indices: 17239732--17239764 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
17239722 CTTGAGGCAC
17239732 CATCGCCGGAG
1 CATCGCCGGAG
*
17239743 CATCACCGGAG
1 CATCGCCGGAG
17239754 CATCGCCGGAG
1 CATCGCCGGAG
17239765 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.36, G:0.33, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:17240377 original size:26 final size:26
Alignment explanation
Indices: 17240341--17240393 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17240331 GTTAACTTAG
17240341 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17240367 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17240393 G
1 G
17240394 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17240730 original size:159 final size:158
Alignment explanation
Indices: 17240367--17240868 Score: 539
Period size: 159 Copynumber: 3.2 Consensus size: 158
17240357 CCCAGTCTAA
* *
17240367 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGATCTGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGGT
* * * * *
17240431 AGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCAATCTACCTCTCCGATCGACTGAGCGC
65 AGCACGCAGGGGGGATCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
*
17240496 CCGCACGC-CGTTTCGTGCATTGGCTTAG
130 CCGCACGCTCGTTTCGTGGATTGGCTTAG
* ** * * * * * * * *
17240524 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGCGGGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGGTA
* * * *
17240589 GCACGCAGAAGGGGATC-GGATCGATCCCTGGCTTG-GACATTATGCCTCTCCGATCGGCTCAGT
66 GCACGCAG-GGGGGATCAGG-TCGATCCCTGGCTTGCG-CATTCTGCCTCTCCGATCGGCTGAGC
* * * **
17240652 GGCCGCACGCTCGTTTCATGGTTTAACTTAG
128 GCCCGCACGCTCGTTTCGTGGATTGGCTTAG
* **
17240683 GCACACGGAGTTCATTACCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGGT
* * * * **
17240747 AGCACGCATGGGGGGA-CTGGGTCGATCCCTGACTTGTGCATTCTGCCTCTTCGGCCGGCTGAGC
65 AGCACGCA-GGGGGGATC-AGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* *
17240811 GCCCGCACGATCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGATTGGCTTAG
*
17240842 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17240869 CATATGGAGT
Statistics
Matches: 276, Mismatches: 58, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 59 0.21
158 53 0.19
159 154 0.56
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGGTA
GCACGCAGGGGGGATCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGATTGGCTTAG
Found at i:17241063 original size:26 final size:26
Alignment explanation
Indices: 17241027--17241079 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17241017 GTTGACTTAG
17241027 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17241053 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17241079 G
1 G
17241080 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17241237 original size:184 final size:184
Alignment explanation
Indices: 17240687--17241238 Score: 709
Period size: 185 Copynumber: 3.0 Consensus size: 184
17240677 ACTTAGGCAC
* *
17240687 ACGGAGTTCATTACCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCAC
* * *
17240752 GCATGGGGGGACTGGG-TCGATCCCTGACTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCG
66 GCA-GGGGGGACAGGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCG
*
17240816 CACGAT-CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAT
129 CACG-TCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
* * * * * * *
17240872 ATGGAGTTCATTCTCAGTCTAAGATCAGACCGGATCGAGGGTTGCTG-CAGTAGGATCTACAACA
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCAGGATCGACAGCA
* * * * * ** * *
17240936 CGTCGGGGGGGACCGAGCCGGTCCCCAGCTTGCGCATTCTACCTCTTCGGCCGACTGAGCGCCCG
65 CG-CAGGGGGGACAGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCG
* * *
17241001 CACG-CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCAT
129 CACGTC-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCAT
* * *
17241057 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCAC
* * *
17241122 GCAGGGGGGACAGGGCTGATCCCTGGCTTCCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCA
66 GCAGGGGGGACAGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCA
* *
17241187 CGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
131 CGTCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17241239 CCCAGCCGGA
Statistics
Matches: 307, Mismatches: 51, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
183 3 0.01
184 94 0.31
185 205 0.67
186 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (184 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCAC
GCAGGGGGGACAGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCA
CGTCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
Found at i:17248863 original size:26 final size:26
Alignment explanation
Indices: 17248834--17248886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17248824 GTTGACTTAG
17248834 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17248860 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17248886 G
1 G
17248887 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17250260 original size:346 final size:339
Alignment explanation
Indices: 17249720--17250670 Score: 978
Period size: 346 Copynumber: 2.7 Consensus size: 339
17249710 CGCCCGCACG
* * * * *
17249720 CTCATTCCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCTTATGGACTTGATTC
1 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
17249785 CCAATCTAAGATCGGACCAGACCGAGGGTTGAGGT---AGTAGGATCGGTAGCACGTAGGGGGGA
66 CCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGTAGGATCGGCAGCACGTAGGGGGGA
* * * * * * *
17249847 CCGGGACAATCCCCGACTTGCACATTCTGCCTCTCCAGTCGGCCGAGCGCCCGCATGCCCGTTTC
131 CCGGG-CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACG-CCATTTC
*
17249912 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
194 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGG
*** * * * *
17249977 TAGTGGGACCGGCAGCGGGATTGGCAGCACGCTGAGGGGGACCGAGCTGATCC-C-AGGCTTGCG
259 TAGCAAGACCGGCAGCAGGATCGGCAGCACGC--AGAGGGACCGAGCTGAGCCTCGA-G-TTGCG
17250040 ATTATG-CT-CG-C-A-CA-
320 ATTATGCCTCCGACGACCAC
* * * *
17250054 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATT
1 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATT
* * * * *
17250118 CCTAGTGTAAGATCAGACCAGACCGAGGGTTTCGGTAGTAGGACCAGCAGTAGGATCGGCAACAC
65 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGC-G--GT------AGCAGTAGGATCGGCAGCAC
* *
17250183 GTAGGGGGGACCGGGCTGATCCCCGTCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCTGCA
121 GTAGGGGGGACCGGGC-GATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCA
* *
17250248 CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCCAGTCAGACCG
185 CGC-CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCG
* * *
17250313 AGGGTTGTGGTAGCAAGCCCGGTAGCAGGATCGGCAGCATGCAGAGGGACCGAGCTGAGCCTCGA
249 AGGGTTGTGGTAGCAAGACCGGCAGCAGGATCGGCAGCACGCAGAGGGACCGAGCTGAGCCTCGA
17250378 GTTGCGATTATGCCTCTCCGACCGACTGAGCGCCCGCAC
314 GTTGCGATTATG-C-CT----CCGAC-GA-----C-CAC
* *
17250417 GCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGTGTTCATT
1 -CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* ** *
17250482 CCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGC---AGGATCAACAGCACGCAGGGGGG
65 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGTAGGATCGGCAGCACGTAGGGGGG
* * * * *
17250544 ACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGCCAATTT
130 ACCGGG-CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCC-ATTT
** * * *
17250609 CGTGAATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCCAGCCAGACCGGGGGTT
193 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
17250671 ATGCCAGCGG
Statistics
Matches: 510, Mismatches: 67, Indels: 62
0.80 0.10 0.10
Matches are distributed among these distances:
333 3 0.01
334 78 0.15
335 1 0.00
337 2 0.00
344 28 0.05
345 4 0.01
346 164 0.32
347 2 0.00
351 1 0.00
352 131 0.26
353 2 0.00
355 4 0.01
361 2 0.00
362 2 0.00
363 1 0.00
364 82 0.16
365 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (339 bp):
CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGTAGGATCGGCAGCACGTAGGGGGGA
CCGGGCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCCATTTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTA
GCAAGACCGGCAGCAGGATCGGCAGCACGCAGAGGGACCGAGCTGAGCCTCGAGTTGCGATTATG
CCTCCGACGACCAC
Found at i:17250313 original size:170 final size:169
Alignment explanation
Indices: 17250102--17250454 Score: 381
Period size: 168 Copynumber: 2.1 Consensus size: 169
17250092 CCATGTCTAA
* ** * *
17250102 GCATACGGAGTTCATTCCTA-GTGTAAG-ATCAGACCAGACCGAGGGTT-TCGGTAGTAGGACCA
1 GCATACGGAGTTCATT-CTATGTCTAAGCCCCAG-TCAGACCGAGGGTTGT-GGTAGTAGGACCG
* * * *
17250164 GCAGTAGGATCGGCAACACGTAGGGGGGACCGGGCTGATCCCCGTCTTGCGCATTCTGCCTCTCC
63 GCAGCAGGATCGGCAGCACGTAGGGGGGACCGAGCTGATCCCCGACTTGCG-ATTCTGCCTCTCC
* * *
17250229 GGTCAGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAG
127 GGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * *
17250272 GCATACGGAGTTCATTCTATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGCAAGCCCGGTA
1 GCATACGGAGTTCATTCTATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGTAGGACCGGCA
* * * * * * * **
17250337 GCAGGATCGGCAGCATGCA-GAGGGACCGAGCTGAGCCTCGAGTTGCGATTATGCCTCTCCGACC
66 GCAGGATCGGCAGCACGTAGGGGGGACCGAGCTGATCCCCGACTTGCGATTCTGCCTCTCCGGTC
* * *
17250401 GACTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAG
131 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
*
17250440 GCATACAGAGTTCAT
1 GCATACGGAGTTCAT
17250455 CCCCAGTCTA
Statistics
Matches: 151, Mismatches: 29, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
168 61 0.40
169 25 0.17
170 61 0.40
171 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (169 bp):
GCATACGGAGTTCATTCTATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGTAGGACCGGCA
GCAGGATCGGCAGCACGTAGGGGGGACCGAGCTGATCCCCGACTTGCGATTCTGCCTCTCCGGTC
GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:17250478 original size:26 final size:26
Alignment explanation
Indices: 17250440--17250492 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17250430 GTTGACTTAG
17250440 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
17250466 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17250492 G
1 G
17250493 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17250977 original size:26 final size:26
Alignment explanation
Indices: 17250941--17250993 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17250931 GTTGGCTTAG
*
17250941 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17250967 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17250993 G
1 G
17250994 ATTAGAGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17251416 original size:503 final size:504
Alignment explanation
Indices: 17250529--17251499 Score: 1184
Period size: 503 Copynumber: 1.9 Consensus size: 504
17250519 GCAGGATCAA
* * ** *
17250529 CAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCAACTGAGCG
1 CAGCACGCAGGGGGGACCGGACCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCAACTGAGCA
* * * *
17250594 CCCGCACGCCAATTTCGTGAATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCCAGCC
66 CCCACACGCCAATTTCATGAATTAGCTTAGGCATACGGAGTTCATTCCATGTCTAATCCCCAGCC
* * * *
17250659 AGACCGGGGGTTATGCCAGCGGGACTGGCAGCACACAGAGGGGGAACGGTCCAATCCCTGGCTTG
131 AGACCGAGGGTCATGCCAGCGGGACCGACAGCACACAGAGGGGGAACGGTCCAATCCCTGGCTTG
* * *
17250724 AGCATTATGCCTCTTCGGTCGGTTCAGTGCCCGCACGCTCATTTCATGGTTGACTTATGCATACG
196 AGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACACTCATTTCATGGTTGACTTATGCATACG
* * * *
17250789 GAATTCATTGACAGTCTAAGATTAGACTGGACCGAAGGTTTTGACAGCAGGATCGACAGTACACA
261 GAATTCATTGACAGTCTAAGATAAAACTGGACCGAAGGTTATGACAGCAGGATCGACAGCACACA
* * *
17250854 GCGGTAGATCGAGCTGATCCTCAACTTACGCAATCTGCCTCTCCGATCGGCTAAGTGCCCGAACA
326 GCGGGAGATCGAGCTGATCCCCAACTTACACAATCTGCCTCTCCGATCGGCTAAGTGCCCGAACA
* *
17250919 CTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
391 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTACATTC
*
17250984 CCAGTCTAAGATTAGAGGGTTGCGATAGCAGAACCAGCAGCAAGATCGG
456 CCAATCTAAGATTAGAGGGTTGCGATAGCAGAACCAGCAGCAAGATCGG
* * **
17251033 CAGCACGTAGGGGGGACCGGACCGATCCCTAGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCA
1 CAGCACGCAGGGGGGACCGGACCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCAACTGAGCA
* * *** ** * * *
17251098 CCTACGCGCTTGTTTCATGGGTTAGCTTTGGCATACGGAGTTCATTCCATGTCTAA-GCCCAGCT
66 CCCACACGCCAATTTCATGAATTAGCTTAGGCATACGGAGTTCATTCCATGTCTAATCCCCAGCC
* * * * * * *
17251162 GGATCGAGGGTCATGGCAGTGGGACCGACAGCACGCAGAGGGGGACCAGGT-CGATCCCCT-G-T
131 AGACCGAGGGTCATGCCAGCGGGACCGACAGCACACAGAGGGGGAAC-GGTCCAAT-CCCTGGCT
* *
17251224 TGCGCATTATGCCTCTTCGGTCGGCTC-GACGCCCGCACACTCATTTCGTGGGTTGACTTATGCA
194 TGAGCATTATGCCTCTTCGGTCGGCTCAG-CGCCCGCACACTCATTTCAT-GGTTGACTTATGCA
* ** * * **
17251288 TACGGAGTTCATTTCCAGTCTAAGATCAAAAC-GGACTGAGGGTTATGGTAGCAGGATCGACAGC
257 TACGGAATTCATTGACAGTCTAAGAT-AAAACTGGACCGAAGGTTATGACAGCAGGATCGACAGC
* * * * ** * * * * *
17251352 ACATAGGGGGGGA-CTG-GGTCGATCCCCGGCTTGCACAATCTGCCTTTCCGGTTGGCTGAGTGC
321 ACACAGCGGGAGATC-GAGCT-GATCCCCAACTTACACAATCTGCCTCTCCGATCGGCTAAGTGC
* * * *
17251415 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCATACGGAG
384 CCGAACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
17251480 TACATTCCCAATCTAAGATT
449 TACATTCCCAATCTAAGATT
17251500 TTAAGCTACG
Statistics
Matches: 389, Mismatches: 71, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
501 1 0.00
502 46 0.12
503 232 0.60
504 110 0.28
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (504 bp):
CAGCACGCAGGGGGGACCGGACCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCAACTGAGCA
CCCACACGCCAATTTCATGAATTAGCTTAGGCATACGGAGTTCATTCCATGTCTAATCCCCAGCC
AGACCGAGGGTCATGCCAGCGGGACCGACAGCACACAGAGGGGGAACGGTCCAATCCCTGGCTTG
AGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACACTCATTTCATGGTTGACTTATGCATACG
GAATTCATTGACAGTCTAAGATAAAACTGGACCGAAGGTTATGACAGCAGGATCGACAGCACACA
GCGGGAGATCGAGCTGATCCCCAACTTACACAATCTGCCTCTCCGATCGGCTAAGTGCCCGAACA
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTACATTC
CCAATCTAAGATTAGAGGGTTGCGATAGCAGAACCAGCAGCAAGATCGG
Found at i:17251468 original size:159 final size:157
Alignment explanation
Indices: 17251104--17251472 Score: 379
Period size: 159 Copynumber: 2.3 Consensus size: 157
17251094 AGCACCTACG
* * * * ** *
17251104 CGCTTGTTTCATGGGTTAGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCTGGATCGA
1 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAAAACTGGATCGA
** * * * *
17251169 GGGTCATGGCAGTGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCTGTTGCGCATTAT
66 GGGTCATGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGGTTGCACAATAT
17251234 GCCTCTTCGGTCGGCTCGACGCCCGCA
131 GCCTCTTCGGTCGGCTCGACGCCCGCA
* * * *
17251261 CACTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTTCCA-GTCTAAGATCAAAAC-GGA-
1 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAG--CAAAACTGGAT
* * * * * **
17251323 CTGAGGGTTATGGTAGCAGGATCGACAGCACATAGGGGGGGACTGGGTCGATCCCCGGCTTGCAC
63 C-GAGGGTCATGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGG-TTGCAC
* * * *
17251388 AATCTGCCT-TTCCGGTTGGCT-GAGTGCCCGTA
126 AATATGCCTCTT-CGGTCGGCTCGA-CGCCCGCA
*
17251420 CGCTCGTTTCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCA
1 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17251473 TACGGAGTAC
Statistics
Matches: 171, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
157 40 0.23
158 62 0.36
159 69 0.40
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (157 bp):
CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAAAACTGGATCGA
GGGTCATGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGGTTGCACAATAT
GCCTCTTCGGTCGGCTCGACGCCCGCA
Found at i:17252198 original size:26 final size:26
Alignment explanation
Indices: 17252168--17252220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17252158 GTTGACTTAG
*
17252168 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17252194 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17252220 G
1 G
17252221 ATCAGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17252668 original size:158 final size:157
Alignment explanation
Indices: 17252194--17252695 Score: 553
Period size: 158 Copynumber: 3.2 Consensus size: 157
17252184 CCCAGTCTAA
* * *
17252194 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACGGGACCAAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAC-GGACCGAGGGTTGTGGCAGCAGGCTCGAC
* * * *
17252258 AGCACGCAGGGTGGATCGAGCCGATCCCCGGCTGGCGCATTCTGCCTCTTCGGTCGGCTGAGCAT
64 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCAC
* * *
17252323 CCGTACACACATTTTGTGGGTTGGCTTAG
129 CCGCACGCTCATTTTGTGGGTTGGCTTAG
* ** * *
17252352 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACT-GGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACGGACCGAGGGTTGTGGCAGCAGG-CTCGAC
* * * *
17252416 AGCACGCAGAGGGGGACCGACCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCG
64 AGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCA
* **
17252481 CCCCCACGCTCATTTTGTGGGTTAACTTAG
128 CCCGCACGCTCATTTTGTGGGTTGGCTTAG
* ** * ** * *
17252511 GCATATGGAGTTCATTCCCA-GTCTAAGATTTGATCTGACCGAGGGTTACGGTAGCAGGCTCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGGACCGAGGGTTGTGGCAGCAGGCTCGAC
* * * * * * *
17252575 AGCATGTAGGGGGGACCGGGCCGATTCCCGACTTGCGCATTCTACCT-TTCCGGTCGGATGAGCA
64 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTT-CGGTCGGCTGAGCA
* *
17252639 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCATTTTGTGGGTTGGCTTAG
17252669 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17252696 CATACAGAGT
Statistics
Matches: 284, Mismatches: 51, Indels: 18
0.80 0.14 0.05
Matches are distributed among these distances:
157 8 0.03
158 147 0.52
159 126 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGGACCGAGGGTTGTGGCAGCAGGCTCGACAG
CACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCC
GCACGCTCATTTTGTGGGTTGGCTTAG
Found at i:17252705 original size:26 final size:26
Alignment explanation
Indices: 17252669--17252728 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
17252659 GTTGGCTTAG
*
17252669 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17252695 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17252721 G-AT-CAGAG
1 GCATACAGAG
17252729 GGTTGCGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 22 0.69
27 3 0.09
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17253003 original size:157 final size:152
Alignment explanation
Indices: 17252761--17253199 Score: 402
Period size: 158 Copynumber: 2.8 Consensus size: 152
17252751 GCAAGATCGG
* * *
17252761 CAGCACGCAGGGGGGACCGGCCGAT-CCCTAGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCA
1 CAGCACGCAGGGGGGACCGGTCGATCCCCT-GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC-
* * * * ** *
17252825 CCTACGCGCTTGTTTCATGGGTTAGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCTG
64 CC-GCACGCTCGTTTCGTGGGTT-GCTTTGGCATACGGAGTTCATTCCATGTCTAAGCAAAAC-G
**
17252890 GACCGAGGGTCATGGCAGTGGGACCGA
126 GACCGAGGGTCATGGCAGCAGGACCGA
*
17252917 CAGCACGCAGAGGGGGACCAGGTCGATCCCCTG-TTGCGCATTATGCCTCTTCGGTCGGCTCGAC
1 CAGCACGCAG-GGGGGACC-GGTCGATCCCCTGCTTGCGCATTCTGCCTCTTCGGTCGGCT-GA-
* *
17252981 GCCCGCACACTCATTTCGTGGGTTGACTTAT-GCATACGGAGTTCATTTCCA-GTCTAAGATCAA
62 GCCCGCACGCTCGTTTCGTGGGTTG-CTT-TGGCATACGGAGTTCA-TTCCATGTCTAAG--CAA
* * * *
17253044 AACGGACTGAGGGTTATGGTAGCAGGATCGA
122 AACGGACCGAGGGTCATGGCAGCAGGACCGA
** * * * * *
17253075 CAGCACATAGGGGGGGACTGGGTCGATCCCCGGCTTGCACAATCTGCCT-TTCCGGTTGGCTGAG
1 CAGCACGCA-GGGGGGAC-CGGTCGATCCCCTGCTTGCGCATTCTGCCTCTT-CGGTCGGCTGA-
* * *
17253139 TGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCA
62 -GCCCGCACGCTCGTTTCGTGGGTT-GCTTTGGCATACGGAGTTCATTCCATGTCTAAGCA
17253200 TACGGAGTAC
Statistics
Matches: 232, Mismatches: 33, Indels: 35
0.77 0.11 0.12
Matches are distributed among these distances:
156 11 0.05
157 72 0.31
158 74 0.32
159 74 0.32
160 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (152 bp):
CAGCACGCAGGGGGGACCGGTCGATCCCCTGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCCC
GCACGCTCGTTTCGTGGGTTGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCAAAACGGACCG
AGGGTCATGGCAGCAGGACCGA
Found at i:17253058 original size:501 final size:501
Alignment explanation
Indices: 17252095--17253225 Score: 1418
Period size: 501 Copynumber: 2.3 Consensus size: 501
17252085 ACCACCCGTT
* * * * *
17252095 CGATCCCCGACTTGCGCATCTTGCCTTTCTGGTCAGCTAAGCGCCCGCACGCTTGTTTCATGGGT
1 CGATCCCCGACTTGCGCATC-TGCCTTTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
17252160 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
65 TGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* ***** * * * *
17252224 AGACGGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGTGGATCGAGCCGATCCCCGG
129 AGACGGGACCAAGAGAACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAG
* * * *
17252289 CTGGCGCATTCTGCCTCTTCGGTCGGCTGAGCATCCGTACACACATTTTGTGGGTTGGCTTAGGC
194 CTGACGCATTCTGCCTCTTCGGCCGGCTGAGCATCCGTACACACATTTTATGGGTTAGCTTAGGC
* ** * *
17252354 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGC
259 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTCATGGCAGCAGGACCGACAGC
17252419 ACGCAGAGGGGGACCGACCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCC
324 ACGCAGAGGGGGACCGACCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCC
* * * *** * *
17252484 CCACGCTCATTTTGTGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTTGATCTGA
389 CCACACTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAACGGA
* * **
17252549 CCGAGGGTTACGGTAGCAGGCTCGATAGCATGTA-GGGGGGACCGGGC
454 CCGAGGGTTACGGTAGCAGGATCGACAGCACATAGGGGGGGACCGGGC
* * * *
17252596 CGATTCCCGACTTGCGCATTCTACCTTTCCGGTCGGATGAGCACCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCA-TCTGCCTTTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
17252661 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * *
17252726 GA-GGGTTGCGATAGCAGAACCAGCAGCAAGATCGGCAGCACGCAGGGGGGACCG-GCCGATCCC
130 GACGGG--ACCA-AG-AGAACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCCGATCCC
* * * * *
17252789 TAGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCA-CC-TACGCGCTTGTTTCATGGGTTAGCT
191 CAGCTGACGCATTCTGCCTCTTCGGCCGGCTGAGCATCCGTACACACAT-TTT-ATGGGTTAGCT
* * **
17252852 TTGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCTGGACCGAGGGTCATGGCAGTGGGACCG
254 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTCATGGCAGCAGGACCG
** *
17252916 ACAGCACGCAGAGGGGGACC-AGGTCGATCCCCTG-TTGCGCATTATGCCTCTTCGGTCGGCTC-
319 ACAGCACGCAGAGGGGGACCGA-CCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCA
* * * *
17252978 GACGCCCGCACACTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTTCCAGTCTAAGATCA
383 G-CGCCCCCACACTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
17253043 AAACGGACTGAGGGTTATGGTAGCAGGATCGACAGCACATAGGGGGGGACTGGGT
447 AAACGGACCGAGGGTTACGGTAGCAGGATCGACAGCACATAGGGGGGGACCGGGC
* * * * *
17253098 CGATCCCCGGCTTGCACAATCTGCCTTTCCGGTTGGCTGAGTGCCCGTACGCTCGTTTCGTGGGT
1 CGATCCCCGACTTGCGC-ATCTGCCTTTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
17253163 TGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCATACGGAGTACATTCCCAATCTAAGAT
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
17253226 TTTAAGCTAC
Statistics
Matches: 540, Mismatches: 78, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
500 7 0.01
501 235 0.44
502 189 0.35
503 80 0.15
504 29 0.05
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (501 bp):
CGATCCCCGACTTGCGCATCTGCCTTTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACGGGACCAAGAGAACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCT
GACGCATTCTGCCTCTTCGGCCGGCTGAGCATCCGTACACACATTTTATGGGTTAGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTCATGGCAGCAGGACCGACAGCAC
GCAGAGGGGGACCGACCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCCC
ACACTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAACGGACC
GAGGGTTACGGTAGCAGGATCGACAGCACATAGGGGGGGACCGGGC
Found at i:17253195 original size:159 final size:157
Alignment explanation
Indices: 17252831--17253199 Score: 386
Period size: 159 Copynumber: 2.3 Consensus size: 157
17252821 AGCACCTACG
* * * * ** *
17252831 CGCTTGTTTCATGGGTTAGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCTGGACCGA
1 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAAAACTGGACCGA
** * * * *
17252896 GGGTCATGGCAGTGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCTGTTGCGCATTAT
66 GGGTCATGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGGTTGCACAATAT
17252961 GCCTCTTCGGTCGGCTCGACGCCCGCA
131 GCCTCTTCGGTCGGCTCGACGCCCGCA
* * * *
17252988 CACTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTTCCA-GTCTAAGATCAAAAC-GGAC
1 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAG--CAAAACTGGAC
* * * * * * **
17253051 TGAGGGTTATGGTAGCAGGATCGACAGCACATAGGGGGGGACTGGGTCGATCCCCGGCTTGCACA
63 CGAGGGTCATGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGG-TTGCACA
* * * *
17253116 ATCTGCCT-TTCCGGTTGGCT-GAGTGCCCGTA
127 ATATGCCTCTT-CGGTCGGCTCGA-CGCCCGCA
*
17253147 CGCTCGTTTCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCA
1 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17253200 TACGGAGTAC
Statistics
Matches: 171, Mismatches: 34, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
157 39 0.23
158 63 0.37
159 69 0.40
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (157 bp):
CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAAAACTGGACCGA
GGGTCATGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGGTTGCACAATAT
GCCTCTTCGGTCGGCTCGACGCCCGCA
Found at i:17253924 original size:26 final size:26
Alignment explanation
Indices: 17253894--17253947 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
17253884 GGTTGACTTC
17253894 AGCATA-AGGAGTTCATTCCCAGTCTA
1 AGCATACA-GAGTTCATTCCCAGTCTA
17253920 AGCATACAGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
17253946 AG
1 AG
17253948 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTA
Found at i:17254210 original size:158 final size:159
Alignment explanation
Indices: 17253921--17254423 Score: 493
Period size: 158 Copynumber: 3.2 Consensus size: 159
17253911 CCCAGTCTAA
* * * * * *
17253921 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGA-GGAATGCGGCAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATCGACGG-TTACGGTAGCAGGATCG
** ** * * * * * * * *
17253983 GTAGCATGCAGGGGGGATC-GAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGGTTGAG
64 ACAGCACACAGGGGGGACCAG-GCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCAGCTCAG
* * *
17254047 TGCCCGCACGTTCGTTTCATGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * *
17254079 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TC-GATCGACGGTTGTGGTAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCGACGGTTACGGTAGCAGGATC-GA
* ** * * **
17254141 CGGCACGTAGAGGGGGACCGGGCCGATCCCAGGCTTGCGTATTATGCCTCTCCGGTCAGCTCAGC
65 CAGCACACAG-GGGGGACCAGGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGC
*
17254206 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17254237 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATCGACGGTTACGGTAGCAGGATCGA
* * * * *
17254300 CAGCACACAGGGGGGACCAGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
65 CAGCACACAGGGGGGACCAGGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCG
*
17254365 CCCGCACGCTCGCTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
17254395 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
17254424 TACGGAGTTC
Statistics
Matches: 282, Mismatches: 51, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
156 1 0.00
157 33 0.12
158 212 0.75
159 35 0.12
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCGACGGTTACGGTAGCAGGATCGAC
AGCACACAGGGGGGACCAGGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17254431 original size:26 final size:26
Alignment explanation
Indices: 17254395--17254447 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17254385 GTTGGCTTAG
17254395 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
17254421 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
17254447 G
1 G
17254448 ATCAAACCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:17254553 original size:184 final size:184
Alignment explanation
Indices: 17254237--17254606 Score: 515
Period size: 184 Copynumber: 2.0 Consensus size: 184
17254227 GTTGACTTAG
* * * *
17254237 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGCAGCAGGATCAACA
* ** * *
17254302 GCACACAGGGGGGACCAGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACACAAGGGGGACCAGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCC
**
17254367 CGCACGCTCGCTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTAACTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * ** *
17254421 GCATACGGAGTTCATTCCCATTCTAAGATCAAACCCGACCGAGGGTTGTGGCAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGCAGCAGGATCAACA
* * * ** * *
17254486 GCACGCAAGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTAATCGCC
66 GCACACAAGGGGGACCAGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCC
* *
17254551 CGCACGCTAATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTAACTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17254605 GC
1 GC
17254607 CCCAGCCGGA
Statistics
Matches: 161, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
184 161 1.00
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGCAGCAGGATCAACA
GCACACAAGGGGGACCAGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCC
CGCACGCTAACTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17254717 original size:13 final size:13
Alignment explanation
Indices: 17254699--17254723 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17254689 TGCAGAATTG
17254699 CCTCTCCGACCGA
1 CCTCTCCGACCGA
17254712 CCTCTCCGACCG
1 CCTCTCCGACCG
17254724 GTTGGGTGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.56, G:0.16, T:0.16
Consensus pattern (13 bp):
CCTCTCCGACCGA
Found at i:17254793 original size:26 final size:26
Alignment explanation
Indices: 17254763--17254814 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17254753 TTGACTTAGA
17254763 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
17254789 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
17254815 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:17255227 original size:155 final size:157
Alignment explanation
Indices: 17254838--17255267 Score: 435
Period size: 155 Copynumber: 2.7 Consensus size: 157
17254828 GAGGGTTGTG
* ** * * *
17254838 GCAGCACGCAAGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTC-CAGCCGGCTGAG
1 GCAGCACG-TAGGGGGACTGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCTGA-CAGGCTGAA
* * * * *
17254902 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCAAG
64 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCAAG
*
17254967 CCGGATCGAGGGTTGTGGCAGTGAGACCA
129 CCGGATCGAGGGTTGTGACAGTGAGACCA
* ***
17254996 GCAGCACGTAGAGGGGGACCT-GGCCAATCCCCAGCTTGTGCATTAC-GCCTCT-TCGGTTGGCT
1 GCAGCACGT--AGGGGGA-CTGGGCCGATCCCCAGCTTGTGCATT-CTGCCTCTCT-GACAGGCT
* * * *
17255058 CAACGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCA-ATCTAAGATC
61 GAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACC
** * * *
17255122 GGGTCGGA-CGAGGGTTGTGACAG-CATGATC-
126 AAGCCGGATCGAGGGTTGTGACAGTGA-GACCA
**
17255152 GACAGCACGTAGGGGGACTGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCTGACAGGCTGAAC
1 G-CAGCACGTAGGGGGACTGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCTGACAGGCTGAAC
* * * * *
17255217 GCCTGGACGCTCGTTTCGTGGGTTGGCTTAGGCGTACGAAGTTCATTCCAT
65 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
17255268 GCCTAAGCAT
Statistics
Matches: 222, Mismatches: 38, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
154 3 0.01
155 84 0.38
156 3 0.01
157 25 0.11
158 20 0.09
159 84 0.38
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GCAGCACGTAGGGGGACTGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCTGACAGGCTGAACG
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCAAGCC
GGATCGAGGGTTGTGACAGTGAGACCA
Found at i:17262272 original size:159 final size:157
Alignment explanation
Indices: 17261884--17262377 Score: 381
Period size: 159 Copynumber: 3.1 Consensus size: 157
17261874 CCCAATGTAA
*
17261884 GCATCCGGAGTTCATTCCCAGTCAAAGATCAGACCAGACCGAGGGTT-CTGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCAGTCAAAGATCA-ACCAGACCGAGGGTTGC-GACAGCAGGATCGAC
** * * * * * *
17261948 AGCACGTAG-GGGGGACCGGGCCAATCCCCAGCTTGTGCGTTTTGCCTCTCTGATCGACTGAGCG
63 AGCACACAGAGGGGGACCGGGCCAATCCCCAGCTTGTGCATTATGCCTCTCCGACCGACTCAACG
* * * *
17262012 CCCGCACCCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACCCCCATTGCATGGGTTGACTTAG
* ** * * * * *
17262042 GCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA-CTGGC
1 GCATACGGAGTTCATTCCA-GTCAAAG-ATCAACCAGACCGAGGGTTGCGACAGCAGGATC-GAC
* * ** * * ** *
17262106 AGCACACAGAGGGGGATCGGGCCGATCTTCGGCTTGTGCATTATGCCTCTCCGGCCGGTTCAATG
63 AGCACACAGAGGGGGACCGGGCCAATCCCCAGCTTGTGCATTATGCCTCTCCGACCGACTCAACG
* *
17262171 CCCGCACGCTCATTGCATGGGTTGACTTAG
128 CCCGCACCCCCATTGCATGGGTTGACTTAG
* *
17262201 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCAAAGATC-AACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * ** * ** * * * *
17262266 GGACACAG-GAGGGGACCAGATCGATCCCTGGC-T-TGCATATTTGCCTCTCCGATCGACTGAGC
64 GCACACAGAG-GGGGACCGGGCCAATCCCCAGCTTGTGCAT-TATGCCTCTCCGACCGACTCAAC
* * * * *
17262328 ACCCGTACGCTCC-TTTCATGGGTTGGCTTAG
127 GCCCGCAC-CCCCATTGCATGGGTTGACTTAG
*
17262359 GCATACGCAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
17262378 TGTCTAAGCA
Statistics
Matches: 259, Mismatches: 66, Indels: 23
0.74 0.19 0.07
Matches are distributed among these distances:
157 10 0.04
158 109 0.42
159 138 0.53
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCAAAGATCAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGC
ACACAGAGGGGGACCGGGCCAATCCCCAGCTTGTGCATTATGCCTCTCCGACCGACTCAACGCCC
GCACCCCCATTGCATGGGTTGACTTAG
Done.