Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 148 of 402
Found at i:17262389 original size:26 final size:26
Alignment explanation
Indices: 17262359--17262411 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17262349 GTTGGCTTAG
17262359 GCATACGCAGTTCATT-CCATGTCTAA
1 GCATACGCAGTTCATTCCCA-GTCTAA
* *
17262385 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
17262411 G
1 G
17262412 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:17262750 original size:26 final size:26
Alignment explanation
Indices: 17262713--17262765 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17262703 GTTGACTTAG
17262713 GCATACAAAGTTCATACCCAATCTAA
1 GCATACAAAGTTCATACCCAATCTAA
* * *
17262739 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATACCCAATCTAA
17262765 G
1 G
17262766 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATACCCAATCTAA
Found at i:17263455 original size:26 final size:26
Alignment explanation
Indices: 17263419--17263471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17263409 TTGACAATAG
*
17263419 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17263445 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17263471 G
1 G
17263472 ATCGACAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17263828 original size:159 final size:154
Alignment explanation
Indices: 17263445--17263944 Score: 522
Period size: 158 Copynumber: 3.2 Consensus size: 154
17263435 CCCAGTCTAA
* * * * *
17263445 GCATACGGAGTTCATTCCCAGTCTAAGATCGACAGGATCGAGGGTTACGATAGCAGGATCAGCAA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAACA-GATCGAGGGTTGCGACAGCAGGATCAACAG
* *
17263510 CATACAGGGGGGACC-GGACCGATCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGGTTGAGCACC
64 CACACAGGGGGGACCAGG-CCGATCCCGGCTTGCGCATTCTGCCTCTTCGGCC-GGCTGAGCACC
* *
17263574 CGCACACCCATTTCATGGGTTGGCTTAG
127 CGCACACTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
17263602 GCATAGGGAGTTCATTCCAGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGATCGGA-A
1 GCATACGGAGTTCATTCCAGTCTAAG-ATCA-ACAGATCGAGGGTTGCGACAGCAGGATC-AACA
* * * * *
17263666 GCACACAGAGGGGGACCAGGCCGATCCCTGTCTTGCGTATTATGCCTCTTCGGCCAGCTCAGCAC
63 GCACACAG-GGGGGACCAGGCCGATCCC-GGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCAC
* * *
17263731 CCGCACACTCGTTTCGTGGGTTGACTTAT
126 CCGCACACTCGTTTCATGGGTTGGCTTAG
*
17263760 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGA-CTGAGGGTTGCAACAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATC-AAC-AGATC-GAGGGTTGCGACAGCAGGATCAAC
* * * *
17263824 AGCACGCAGGGGGAACCAGGCCGATTCCCGGCTTGCGCATTCTGCCTC-TCTGACCGGCTGAGCG
62 AGCACACAGGGGGGACCAGGCCGA-TCCCGGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGAGCA
* * **
17263888 CCCGGACGCTCGTTTCATATGTTGGCTTAG
125 CCCGCACACTCGTTTCATGGGTTGGCTTAG
17263918 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
17263945 CATATGGAGT
Statistics
Matches: 279, Mismatches: 50, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
156 10 0.04
157 48 0.17
158 153 0.55
159 68 0.24
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAACAGATCGAGGGTTGCGACAGCAGGATCAACAGCA
CACAGGGGGGACCAGGCCGATCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCA
CACTCGTTTCATGGGTTGGCTTAG
Found at i:17265165 original size:158 final size:158
Alignment explanation
Indices: 17264664--17265167 Score: 534
Period size: 158 Copynumber: 3.2 Consensus size: 158
17264654 CCCAGTCTAA
* * * *
17264664 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGA-CAGGATCGAGGGTTGCGACAGCAGGATCGG
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCAAACCA-GACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
17264727 TAGCACGTAGGGGGGATCGAGCCGATCCTCGGATTGTTCATTCTGCCTCTCCGGTCAGCTGAGCG
64 TAGCACGCAGAGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTG
* *
17264792 CCCGCACGCCCGTTTTGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * *
17264822 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCAGGA-CTGAC
1 GCATACGAAGTTCATTCCATGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATC-GAT
* * * * *
17264886 AGCACGCAGAGGGGGACCGGGCCGATCC-CTGACTTGTGCATTTTGCCTCTTCGGTCGGCTCAGT
65 AGCACGCAGA-GGGGATCGGGCCGATCCTCAG-CTTGTGCATTCTGCCTCTCCGGTCGGCTGAGT
* * **
17264950 GCGCCCGTACGCTCATTTCGTGGGTTGAATTAG
128 --GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17264983 GCATACGAAATTCATTCCCA-GTCTAAGATCAAACCAGACCGGGGGTTGCGGCAGCAGGATCGAT
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * *
17265047 AGCACGCAGAGGGGATCGGGTCGATCCTCAGCTTATGCATTCTGCCTCTCC-GACTGGCTGAGTG
65 AGCACGCAGAGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTGCCTCTCCGGTC-GGCTGAGTG
17265111 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17265141 GCATACGGAGTTGATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
17265168 CATACGGAGT
Statistics
Matches: 277, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 101 0.36
159 45 0.16
160 39 0.14
161 84 0.30
162 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGAGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17265177 original size:26 final size:26
Alignment explanation
Indices: 17265141--17265193 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17265131 GTTGGCTTAG
*
17265141 GCATACGGAGTTGATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17265167 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17265193 G
1 G
17265194 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17265545 original size:26 final size:26
Alignment explanation
Indices: 17265508--17265560 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17265498 GTTGGCTTAG
17265508 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17265534 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17265560 G
1 G
17265561 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17266544 original size:158 final size:155
Alignment explanation
Indices: 17266254--17267576 Score: 1025
Period size: 158 Copynumber: 8.4 Consensus size: 155
17266244 CCCAGTCTAA
** * * * * *
17266254 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGTAGGATCAACA
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
17266319 GCACGCAGGGGGGACCGGGTCGATTCCT-GGCTTGCGCATTCTGTCTCTCCGGCAGACTTAGCAC
64 GCACGCAGGGGGGATCGGGTCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGGC-GGCTGAGCGC
* * *
17266383 CCGCACGGC-CGTTTTATGGGTTGGCTTAG
127 CCGCAC-GCTCATTTCATGGGTTGACTTAG
* * *
17266412 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGATC-AGC
1 GCATACGGAGTTCATTCCA-GTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGA-C
* * * ** *
17266476 AGCACGTAGAGGGGGATTGGGTCGATCCTCGGCTTGTGCATTAAGCCTCTCCGGCGGCTCAGCGC
63 AGCACGCAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGC
* * * *
17266541 CCGCACGCTCGTTCCGTGGGTTGACCTAG
127 CCGCACGCTCATTTCATGGGTTGACTTAG
* ** * * * **** **
17266570 GCATATGGAGTTCATTCCCAGTCTAAGGTCAGACCGAACCGAGAGATGCAATAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
17266635 GCACGCAGGGGGGATC-GGCCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGTGC
64 GCACGCAGGGGGGATCGGGTC-GATCCTCGGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCGC
* * *
17266699 CCGCACG-GCAGTTTCGTGGGTT-AGTTTAG
127 CCGCACGCTCA-TTTCATGGGTTGA-CTTAG
* * * * * * ** * *
17266728 GCATAGGGAGTTCAGTCTATGTCTAAGCCCCTGTCGGACCTAGGGTTGTGGCAGTGGGATAGGCA
1 GCATACGGAGTTCATTCCA-GTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
17266793 GCACGCAGAGGGGGACCGTGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGC
64 GCACGCAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGC-GGCTGAGCGC
*
17266858 CCGCACGCTCATTTAATGGGTTGACTTAG
127 CCGCACGCTCATTTCATGGGTTGACTTAG
* ** ** * * *** *
17266887 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATGAGATCGATGGTCAAGGCAGCAGGATCGACC
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCAGCCG-GACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
17266952 GCACGCA-GGGGGATCGGGTC-AGTCC-CTGACTTGCGCATTCTGCCTCTTCAGCCGGTTGAGCG
64 GCACGCAGGGGGGATCGGGTCGA-TCCTC-GGCTTGCGCATTCTGCCTC-TCCGGCGGCTGAGCG
*
17267014 CCCGCACG-TCATTTCGTGGGTTGACTTAG
126 CCCGCACGCTCATTTCATGGGTTGACTTAG
* * * ** * * * * * *
17267043 GCATACAGATTTCATCCCCAGTCTAAG-ATAGGATCAGATCAAGGGTTGTGACAGCAGGATCGAT
1 GCATACGGAGTTCAT-TCCAGTCTAAGCCCA-G-CCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
17267107 AGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGCACATTCTACCTCTCCAGCCGGCTGAGCGC
63 AGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCC-GGCGGCTGAGCGC
*
17267172 CCGCACGC-CTATTTCATGGGTTGGCTTAG
127 CCGCACGCTC-ATTTCATGGGTTGACTTAG
* * * * *
17267201 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGATA
1 GCATACGGAGTTCATTCCA-GTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * ** * * * * *
17267266 GCACGTAGAGAGGGA-CTAGGTCGATCCTCGGCTTGCGCATAATGCATCTACGACCGGCTCAACG
64 GCACGCAG-GGGGGATC-GGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCG-GCGGCTGAGCG
17267330 CCCGCACGCTCATTTCATGGGTTGACTTAG
126 CCCGCACGCTCATTTCATGGGTTGACTTAG
* ** * * *
17267360 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* ** ** * **
17267425 GCACGCAGGGGGGATCGGGTCGATCCTTGATTTGTTCATTCTGCCTTTCCAATCGGCTGAGCGCC
64 GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCC-GGCGGCTGAGCGCC
* *
17267490 CGCACGCTCATTTCATTGGTTGGCTTAG
128 CGCACGCTCATTTCATGGGTTGACTTAG
* **
17267518 GCATACGGAGTTCACTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGATAGCAGGA
1 GCATACGGAGTTCATTCCA-GTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGA
17267577 CCGATAGCCG
Statistics
Matches: 916, Mismatches: 202, Indels: 94
0.76 0.17 0.08
Matches are distributed among these distances:
155 1 0.00
156 76 0.08
157 149 0.16
158 403 0.44
159 275 0.30
160 12 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGCCCGC
ACGCTCATTTCATGGGTTGACTTAG
Found at i:17267176 original size:473 final size:475
Alignment explanation
Indices: 17266398--17267523 Score: 1177
Period size: 473 Copynumber: 2.4 Consensus size: 475
17266388 CGGCCGTTTT
* * * ** * ***
17266398 ATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGT
1 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTCAA
* * * * * **
17266461 GGCAGCGGGATC-AGCAGCACGTAGAGGGGGATTGGGTCGAT-CCTCGGCTTGTGCATTAAGCCT
64 GGCAGCAGGATCGA-CAGCACGCAG-GGGGGATCGGGTCGATCCCT-GACTTGCGCATTCTGCCT
* ** * * * * * ** * *
17266524 CTCC-GGCGGCTCAGCGCCCGCACGCTCGTTCCGTGGGTTGACCTAGGCATATGGAGTTCATTCC
126 TTCCAACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGATTTCATCCC
* * * * * * ** * *
17266588 CAGTCTAAGGTCA-GA-CCGAACCGAGAGATGCAATAGCAGGATCGGTAGCACGCAGGGGGGATC
191 CAGTCTAAGAT-AGGATCAG-ATCAAGGGTTGTGACAGCAGGATCGATAGCACGCAGGGGGGATC
* * ** * * * *
17266651 GGCCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGTGCCCGCACGGC-AGTTTCG
254 GGCCTGATCCCCGGCTTGCACATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCCTA-TTTCA
* * * *
17266715 TGGGTTAGTTTAGGCATAGGGAGTTCAGTCTATGTCTAAGCCCCTG-TCGGACCTAGGGTTGTGG
318 TGGGTTAGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGG
* * * * * * * *
17266779 CAGTGGGATAGGCAGCACGCAGAGGGGGAC-CGTGTCGATCCCCAGCTTGCGCATTATGCCTCTC
382 CAGCGGGACAGACAGCACGCAGAGAGGGACTAG-GTCGATCCCCAGCTTGCGCATAATGCATCTA
* * *
17266843 CGGCTGGCTCAGCGCCCGCACGCTCATTTA
446 CGACCGGCTCAACGCCCGCACGCTCATTTA
* * *
17266873 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-TGAGATCGATGGTCAAG
1 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCG-GACCGAGGGTCAAG
*
17266937 GCAGCAGGATCGACCGCACGCA-GGGGGATCGGGTC-AGTCCCTGACTTGCGCATTCTGCCTCTT
65 GCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGA-TCCCTGACTTGCGCATTCTGCCT-TT
* * *
17267000 -CAGCCGGTTGAGCGCCCGCACG-TCATTTCGTGGGTTGACTTAGGCATACAGATTTCATCCCCA
128 CCAACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGATTTCATCCCCA
* *
17267063 GTCTAAGATAGGATCAGATCAAGGGTTGTGACAGCAGGATCGATAGCACGTAGGGGGGATCGG-G
193 GTCTAAGATAGGATCAGATCAAGGGTTGTGACAGCAGGATCGATAGCACGCAGGGGGGATCGGCC
* *
17267127 TCGATCCTCGGCTTGCACATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCCTATTTCATGGG
258 T-GATCCCCGGCTTGCACATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCCTATTTCATGGG
* *
17267192 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCG
322 TTAGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCG
* * * * *
17267257 GGACCGATAGCACGTAGAGAGGGACTAGGTCGATCCTCGGCTTGCGCATAATGCATCTACGACCG
387 GGACAGACAGCACGCAGAGAGGGACTAGGTCGATCCCCAGCTTGCGCATAATGCATCTACGACCG
*
17267322 GCTCAACGCCCGCACGCTCATTTC
452 GCTCAACGCCCGCACGCTCATTTA
* ***
17267346 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGG
1 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCAAGG
* * * * **
17267411 TAGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTTGATTTGTTCATTCTGCCTTTCCA
66 CAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTTTCCA
* * *
17267476 ATCGGCTGAGCGCCCGCACGCTCATTTCATTGGTTGGCTTAGGCATAC
131 ACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
17267524 GGAGTTCACT
Statistics
Matches: 538, Mismatches: 94, Indels: 38
0.80 0.14 0.06
Matches are distributed among these distances:
472 3 0.01
473 363 0.67
474 82 0.15
475 86 0.16
476 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (475 bp):
ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCAAGG
CAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTTTCCA
ACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGATTTCATCCCCAGTC
TAAGATAGGATCAGATCAAGGGTTGTGACAGCAGGATCGATAGCACGCAGGGGGGATCGGCCTGA
TCCCCGGCTTGCACATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCCTATTTCATGGGTTAG
CTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGAC
AGACAGCACGCAGAGAGGGACTAGGTCGATCCCCAGCTTGCGCATAATGCATCTACGACCGGCTC
AACGCCCGCACGCTCATTTA
Found at i:17267437 original size:317 final size:316
Alignment explanation
Indices: 17267012--17267584 Score: 844
Period size: 317 Copynumber: 1.8 Consensus size: 316
17267002 GCCGGTTGAG
* * *
17267012 CGCCCGCACGTCATTTCGTGGGTTGACTTAGGCATACAGATTTCATCCCCAGTCTAAGATAGGAT
1 CGCCCGCACGTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATAGGAC
* * * *
17267077 CAGATCAAGGGTTGTGACAGCAGGATCGATAGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTG
66 CAGACCAAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTG
*
17267142 CACATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGC-CTATTTCATGGGTTGGCTTAGGCATA
131 CACATTCTACCTCTCCAACCGGCTGAGCGCCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATA
* * * * *
17267206 GGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACG
195 CGGAGTTCACTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACAGCAGGACCGATAGCACG
17267271 TAGAGAGGGACTAGGTCGATCCTCGGCTTGCGCATAATGCATCTACGACCGGCTCAA
260 TAGAGAGGGACTAGGTCGATCCTCGGCTTGCGCATAATGCATCTACGACCGGCTCAA
* *
17267328 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCGG
1 CGCCCGCACG-TCATTTCATGGGTTGACTTAGGCATACAG-AGTTCATCCCCAGTCTAAGATAGG
* * ** * * *
17267392 ACCGGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTTGATT
64 ACCAGACCAAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGACT
** * * * *
17267457 TGTTCATTCTGCCTTTCCAATCGGCTGAGCGCCCGCACGCTCATTTCATTGGTTGGCTTAGGCAT
129 TGCACATTCTACCTCTCCAACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
*
17267522 ACGGAGTTCACTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGATAGCAGGACCGATAGC
194 ACGGAGTTCACTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACAGCAGGACCGATAGC
17267585 CGGATCGATA
Statistics
Matches: 225, Mismatches: 29, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
316 11 0.05
317 213 0.95
318 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (316 bp):
CGCCCGCACGTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATAGGAC
CAGACCAAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTG
CACATTCTACCTCTCCAACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
GGAGTTCACTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACAGCAGGACCGATAGCACGT
AGAGAGGGACTAGGTCGATCCTCGGCTTGCGCATAATGCATCTACGACCGGCTCAA
Found at i:17267738 original size:26 final size:26
Alignment explanation
Indices: 17267702--17267754 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17267692 GTTGACTTAG
17267702 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17267728 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17267754 G
1 G
17267755 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17268610 original size:26 final size:26
Alignment explanation
Indices: 17268581--17268633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17268571 GTTGACTTAG
*
17268581 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
* *
17268607 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
17268633 G
1 G
17268634 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTAA
Found at i:17268974 original size:159 final size:158
Alignment explanation
Indices: 17268614--17269043 Score: 398
Period size: 159 Copynumber: 2.7 Consensus size: 158
17268604 TAAGCATACA
* *
17268614 GAGTTCATTCCCAGTCTAAGATCAGATCAGATCAGATCGAGGGTTGTGACAGCAGGATCGACAGC
1 GAGTTCATTCCCAGTCTAAGATCAGA-C----CAGATCGAGGGTTGTGGCAGCAGGACCGACAGC
* * * * *
17268679 ACACAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACCGACTGAGTGCCCG
61 ACACAGGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCGACTCAGTGCCCA
* *
17268744 CACGTCCATTTCGTGGGTTGGCTTAGGAATAGG
126 CACGTCCATTTCATGGGTTGACTTAGGAATAGG
* ** * * * **
17268777 GAGCTCATT-CCATGTCTAAGCCCCAG-CCAGGTCTAGGGTTGTGGCAGCAGGACCGATAGCATG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGTGGCAGCAGGACCGACAGCACA
* * * * ** *
17268840 CAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCAACCGGTTCAGTGCCCATA
64 CAG-GGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCGACTCAGTGCCCACA
* * *
17268905 CG-CTCATTTCATGGGTTGACTTATGCATATG
128 CGTC-CATTTCATGGGTTGACTTAGGAATAGG
* ** ** *
17268936 GAGTTCGTTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATTGACAACACACA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGACCGACAGCACACA
* * ** * *
17269001 GTGGGGGATCAGGCCGATCCTTGACTTGCGCATTCTGCCTCTC
66 G-GGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTC
17269044 TGGCTGGCTT
Statistics
Matches: 211, Mismatches: 50, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
158 36 0.17
159 150 0.71
160 3 0.01
162 4 0.02
163 15 0.07
164 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGACCGACAGCACACA
GGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCGACTCAGTGCCCACACGT
CCATTTCATGGGTTGACTTAGGAATAGG
Found at i:17270232 original size:25 final size:25
Alignment explanation
Indices: 17270194--17270244 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
17270184 GTTGACATAG
17270194 GCATATGGAGTTCATCCCAATCTAA
1 GCATATGGAGTTCATCCCAATCTAA
* * *
17270219 GCATATGGATTTCATTCCAGTCTAA
1 GCATATGGAGTTCATCCCAATCTAA
17270244 G
1 G
17270245 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (25 bp):
GCATATGGAGTTCATCCCAATCTAA
Found at i:17271628 original size:26 final size:26
Alignment explanation
Indices: 17271592--17271642 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17271582 GACTTAGGCA
17271592 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
17271618 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
17271643 GTTGGATAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:17272142 original size:26 final size:26
Alignment explanation
Indices: 17272092--17272144 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17272082 GTTAGCTTAG
* *
17272092 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATCTCTAA
17272118 GCATACAGAGTTCATTCCCA-CTCTAA
1 GCATACAGAGTTCATT-CCATCTCTAA
17272144 G
1 G
17272145 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATCTCTAA
Found at i:17272338 original size:26 final size:26
Alignment explanation
Indices: 17272289--17272341 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17272279 GTTGACTTAG
*
17272289 GCATACGGAGTTCATCCCTGGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
17272315 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
17272341 G
1 G
17272342 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:17272486 original size:196 final size:195
Alignment explanation
Indices: 17272004--17272540 Score: 634
Period size: 197 Copynumber: 2.7 Consensus size: 195
17271994 CGATAGCATG
* * * * * * * *
17272004 CAGGGGGGACCGGACCGGTCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCACCCGTAT
1 CAGGGGGGAACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCACCCGCAC
* ** * *
17272069 GCTCATTTTATGGGTTAGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACAGAGTTCAT
66 GCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCA-TCCCTGGTCTAAGCATACGGAGTTCAT
* * * *
17272133 TCCCACTCTAAGATCAGACCGGACCGAAGGTTGCGGTAGCAAGACCAACAGCAGGATCAGCAGCA
129 TCCCAGTCTAAGATTAGACCGGACCGAAGGTTGCAGCAGCAAGACCAACAGCAGGATCAGCAGCA
**
17272198 TG
194 CA
* * * * *
17272200 CAGGAGGGGATCGGGTCGATCCCCGGCTTGTGCATTTTGCCTCTTCGG-CTGACTGAGCACCCGC
1 CAGG-GGGGAACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAG-CTGAGCACCCGC
17272264 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTGGTCTAAGCATACGGAGTTCA
64 ACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATCCCTGGTCTAAGCATACGGAGTTCA
* * * * * * *
17272329 TTCCCAGTCTAAGATTGGATCGGATCG-AGGTTTGCAGCAGCAGGACCAGCAGTAGGATCTA-CT
128 TTCCCAGTCTAAGATTAGACCGGACCGAAGG-TTGCAGCAGCAAGACCAACAGCAGGATC-AGCA
17272392 GCACA
191 GCACA
* * *
17272397 CAGGGTGGAACGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCAGCTGAGCGCCCGCAC
1 CAGGGGGGAACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCACCCGCAC
* *
17272462 GCTTGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCC-GTGTCTAAGCATACGGAGTTCAT
66 GCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATCCCTG-GTCTAAGCATACGGAGTTCAT
17272526 TCCCAGTCTAAGATT
129 TCCCAGTCTAAGATT
17272541 TTGAGCCACG
Statistics
Matches: 293, Mismatches: 40, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
195 1 0.00
196 138 0.47
197 153 0.52
198 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (195 bp):
CAGGGGGGAACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCACCCGCAC
GCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATCCCTGGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATTAGACCGGACCGAAGGTTGCAGCAGCAAGACCAACAGCAGGATCAGCAGCACA
Found at i:17272515 original size:26 final size:26
Alignment explanation
Indices: 17272485--17272537 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17272475 GTTGTCTTAG
**
17272485 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17272511 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17272537 G
1 G
17272538 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17279442 original size:158 final size:159
Alignment explanation
Indices: 17279192--17279692 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 159
17279182 GGACCGGATC
* * * * * * * * * * *
17279192 GAGGGTTGCGGCAGTAGGATCAACAGCACGTAGGGGGGATCGGGCCAATCCCCGGCTTGCGTATT
1 GAGGGTTACGGCAGCAGGACCGACAGCACGCAAGGGGGACCGGGTCGATCCCCAGCTTGCGCATT
* * * * * * * * * *
17279257 CTACCTCTTCGACCGGCTGAGCACCCGCACGCCCGTTTCATTGGTTGCCTT-GGCATAGGGAGTT
66 ATGCCTCTCCGACCAGTTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
*
17279321 CATTCCATGTCTAAGCCCCAGTCGGACCA
131 CATTCCATGTCTAAGCCCCAGCCGGACCA
** * * *
17279350 -AGGGTTGTGGCAGC-GAGACCGACGGCATGCAGAGGGGGACCGGGTTGATCCCCAGCTTGCGCA
1 GAGGGTTACGGCAGCAG-GACCGACAGCACGCA-AGGGGGACCGGGTCGATCCCCAGCTTGCGCA
** * ** * *
17279413 TTATGCCTCTCCGGTCGGTTCAGTGCCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAG
64 TTATGCCTCTCCGACCAGTTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
** * *
17279478 TTCATTCCCA-GTCTAAG-ATCGGACCAGA-CA
129 TTCATT-CCATGTCTAAGCCCCAG-CCGGACCA
* * * *
17279508 GAGGGTTACGGTAGCAGGATCGACAGCACGTAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATT
1 GAGGGTTACGGCAGCAGGACCGACAGCACGCAAGGGGGACCGGGTCGATCCCCAGCTTGCGCATT
* * * * **
17279573 CTGCCTCTCCGACCAGTTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAAAGTT
66 ATGCCTCTCCGACCAGTTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* *
17279638 CATTCCATGTCTATGCCCCAGCCGGA-CT
131 CATTCCATGTCTAAGCCCCAGCCGGACCA
* ** *
17279666 GAGGCTTGTGGTAGCAGGACCGACAGC
1 GAGGGTTACGGCAGCAGGACCGACAGC
17279693 GGAATCAATA
Statistics
Matches: 268, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 25 0.09
158 188 0.70
159 50 0.19
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
GAGGGTTACGGCAGCAGGACCGACAGCACGCAAGGGGGACCGGGTCGATCCCCAGCTTGCGCATT
ATGCCTCTCCGACCAGTTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCCGGACCA
Found at i:17279819 original size:329 final size:316
Alignment explanation
Indices: 17279153--17279823 Score: 725
Period size: 316 Copynumber: 2.1 Consensus size: 316
17279143 CAAGTCTAAC
* * * *
17279153 CATATGGAGTTCATTCCCAGTTTAAGATCGGACCGGATCGAGGGTTGCGGCAGTAGGATCAACAG
1 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGGCAGCAGGATCAACAG
* * * * *
17279218 CACGTAGGGGGGATCGGGCCAATCCCCGGCTTGCGTATTCTACCTCTTCGACCGGCTGAGCACCC
66 CACGTAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCC
* * *** *
17279283 GCACGCCCGTTTCATTGGTTGCCTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
131 GCACACCCGTTTCATGGGTTGCCTTGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * * *
17279348 CAAGGGTTGTGGCAGCGAGACCGACGGCATGCAGAGGGGGACCGGGTTGATCCCCAGCTTGCGCA
196 CAAGGCTTGTGGCAGCGAGACCGACGGCATGCAGAGGGGGACCGGGCTAATCCACAGCTTACGCA
** ** ** ** * * *
17279413 TTATGCCTCTCCGGTCGGTTCAGTGCCCGCACGCTCGTTTCGTGGGTTGATTTAGG
261 TTATGCCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCACGAGATGACTTAGG
* * *
17279469 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CAGAGGGTTACGGTAGCAGGATCGACA
1 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTACGGCAGCAGGATCAACA
* * * *
17279533 GCACGTAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGTTGAGCACC
65 GCACGTAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACC
* * *
17279598 CGCACACTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTATGCCCCAGCCGG
130 CGCACACCCGTTTCATGGGTTGCCTT-GGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCCGG
** * *
17279663 ACTGAGGCTTGTGGTAGC-AGGACCGACAGCGGAATCAATAGCACACAGAGGGGGACTGGGCTAA
194 ACCAAGGCTTGTGGCAGCGA-GACCG--A-CGG---C-AT-G----CAGAGGGGGACCGGGCTAA
* * * * * *
17279727 TCCACGGTTTACGTATTATGCCTCTCCGACCGACTGAGCACCCGTACGCTCGTTTTACGAGATGA
246 TCCACAGCTTACGCATTATGCCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCACGAGATGA
17279792 CTTAGG
311 CTTAGG
*
17279798 CATATGGAGTTCATCCCCAGTCTAAG
1 CATATGGAGTTCATTCCCAGTCTAAG
17279824 CATACGGAGT
Statistics
Matches: 287, Mismatches: 53, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
315 1 0.00
316 134 0.47
317 52 0.18
319 1 0.00
320 3 0.01
323 1 0.00
324 2 0.01
325 1 0.00
329 92 0.32
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (316 bp):
CATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGGCAGCAGGATCAACAG
CACGTAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCC
GCACACCCGTTTCATGGGTTGCCTTGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
CAAGGCTTGTGGCAGCGAGACCGACGGCATGCAGAGGGGGACCGGGCTAATCCACAGCTTACGCA
TTATGCCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCACGAGATGACTTAGG
Found at i:17279833 original size:26 final size:26
Alignment explanation
Indices: 17279797--17279849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17279787 GATGACTTAG
*
17279797 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17279823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17279849 G
1 G
17279850 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17280301 original size:157 final size:157
Alignment explanation
Indices: 17279823--17280323 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 157
17279813 CCCAGTCTAA
* * * *
17279823 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCGAGGGTTGTGGTAGCAAGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * *
17279887 AGCACGCAGGGGGTACCTGGCCGATCCACGGCTTACGCATTCTGCCTC-TCAGACAGGCTGAGCG
65 AGCACGC-GGGGGGACCAGGCCGATCCACGGCTTGCGCATTCTGCCTCTTCGGTC-GGCTGAGCA
*
17279951 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** **
17279981 GCGTAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGTGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC-G
* * * * * * * * * * * *
17280043 GCAGCATGAAGAGCGGGATCGGGCCGATCCCCGGCTTGCGCGTTATGCCTTTTCGATCAGCTCAG
63 GCAGCACG-CG-GGGGGACCAGGCCGATCCACGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAG
* * * ** *
17280108 CACCCGCATGCTTGTTTTGTGGGTTCACTTAT
126 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * *
17280140 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * *
17280205 GTACGCGGGGGGACCAAGCCTATCCGCTGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCC
66 GCACGCGGGGGGACCAGGCCGATCCACGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCC
17280270 GCACGCTCGTTTCGTGGGTTGGCTTAG
131 GCACGCTCGTTTCGTGGGTTGGCTTAG
**
17280297 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
17280324 CATACCGAGT
Statistics
Matches: 265, Mismatches: 68, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 94 0.35
158 55 0.21
159 108 0.41
160 8 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCGGGGGGACCAGGCCGATCCACGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17280333 original size:26 final size:26
Alignment explanation
Indices: 17280297--17280349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17280287 GTTGGCTTAG
* *
17280297 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACCGAGTTCATTCCTAGTCTAA
17280323 GCATACCGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCTAGTCTAA
17280349 G
1 G
17280350 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCTAGTCTAA
Found at i:17281054 original size:26 final size:26
Alignment explanation
Indices: 17281016--17281069 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
17281006 TGGGTTGACT
17281016 TAGGCATACGGAGTTCATCCCCAATC
1 TAGGCATACGGAGTTCATCCCCAATC
* * *
17281042 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAATC
17281068 TA
1 TA
17281070 AGATCAGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAATC
Found at i:17281656 original size:158 final size:154
Alignment explanation
Indices: 17281124--17281659 Score: 470
Period size: 158 Copynumber: 3.4 Consensus size: 154
17281114 GCCCGTTTTG
* * * * *
17281124 TGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCATCTGGACCGAGGGTTGTTG-
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ACCAGCTGGACCGAGGGTTG-CGA
* * * * * * *
17281188 CAACGGGA-CTGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACATGCGCCTTATGCCTTTC
63 CAACAGGATC-GACAGCACGCAG-GGGGGATCGGGTCAATCCCAG-TATGCGCATTCTGCCTTTC
* * **
17281252 TGGTCGGTTGAGCGCCTATACGCTCATTTCA
125 CGATCGGTTGAGCGCC-GCACGCTCATTTCA
* * ** *
17281283 TGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCTAAGATTAGATCGGACCGAGGGTTGC-AG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGACCAGCT-GGACCGAGGGTTGCGA-
* * * *
17281347 CAACAGGATCGACAACACGCAGTGGGGA-CTGGGTCAATCCCCG-ACTTGCGCATTCTACCTTTC
63 CAACAGGATCGACAGCACGCAGGGGGGATC-GGGTCAATCCCAGTA--TGCGCATTCTGCCTTTC
* * * *
17281410 CGACCGGCTGAGCACCCGCACGCTCGTTTCA
125 CGATCGGTTGAGC-GCCGCACGCTCATTTCA
* * *
17281441 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGAC
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCAG-CTGGACCGAGGGTTGCGAC
** * * * * *
17281506 AGTAGTATCGACAGCATGCAGGGGGGATCGGGTCAATCCTTAGTATGTGCATTCTGCCTATCCGA
64 AACAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCC-CAGTATGCGCATTCTGCCTTTCCGA
*
17281571 TCGGTTGAGCGCTCGCACACTCATTTCA
128 TCGGTTGAGCGC-CGCACGCTCATTTCA
* * *
17281599 TGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ACCAGCTGGACCGAGGGTTG
17281660 TGGTAGCAAG
Statistics
Matches: 306, Mismatches: 53, Indels: 37
0.77 0.13 0.09
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 222 0.73
159 75 0.25
160 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (154 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGACCAGCTGGACCGAGGGTTGCGACAA
CAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCCCAGTATGCGCATTCTGCCTTTCCGATCG
GTTGAGCGCCGCACGCTCATTTCA
Found at i:17281833 original size:26 final size:26
Alignment explanation
Indices: 17281797--17281849 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17281787 GTTGACTTAG
17281797 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17281823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17281849 G
1 G
17281850 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17282131 original size:159 final size:159
Alignment explanation
Indices: 17281823--17282326 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 159
17281813 CCCAGTCTAA
** * *** * * *
17281823 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGGCCGAGGGTTGTGGTAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGATAGAGGGTTGTGGCAGCAGGACCGAC
* * * * * * * ** * * *
17281887 AGCACGCAG-GGGGGACCGAGCCGATCCCCGGCCTGCGCATTTTGTATCTCC-GATCGACTGAGC
65 AGCACACAGAGGGGGAACGGGCCGATCCCAGTCTTGCGCATTATGCCTCTCCAG-TCGGCTCAAC
* * * *
17281950 ACCCGGATGCCCGTTTCATGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** *
17281981 GCATAGGGAGTTCATTCCATGTCTAAGCCCA-AGCCAGATCA-AGGTTTGTGGCAGTGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAGA-CCAGAT-AGAGGGTTGTGGCAGCAGGACCGA
* * *
17282044 TAGCACACAGAGGGGGACCGGGCCGATCCTCAG-CTTGCGCATTATGCCTCTTCAGTCGGCTCAA
64 CAGCACACAGAGGGGGAACGGGCCGATCC-CAGTCTTGCGCATTATGCCTCTCCAGTCGGCTCAA
* * * * *
17282108 CGCCCGTACGCTTGTTTCGTGGGTTGACTTAT
128 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * *
17282140 GAATACAGAGTTCATTCCCA-GTCTAAGATCAGATCAGATAGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGATAGAGGGTTGTGGCAGCAGGACCGAC
** * * * * * * *
17282204 AGCACGTAGGGGGGGAACGGGCCGATCCCCGTGTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
65 AGCACACAGAGGGGGAACGGGCCGATCCCAGTCTTGCGCATTATGCCTCTCCAGTCGGCTCAACG
17282269 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
17282299 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
17282327 ATATGGAGTT
Statistics
Matches: 272, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 58 0.21
159 203 0.75
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGATAGAGGGTTGTGGCAGCAGGACCGACA
GCACACAGAGGGGGAACGGGCCGATCCCAGTCTTGCGCATTATGCCTCTCCAGTCGGCTCAACGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17282349 original size:26 final size:26
Alignment explanation
Indices: 17282299--17282351 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17282289 GTTGGCTTAG
*
17282299 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17282325 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17282351 G
1 G
17282352 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17283047 original size:26 final size:26
Alignment explanation
Indices: 17283018--17283070 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17283008 GTTGACTTAG
*
17283018 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
17283044 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17283070 G
1 G
17283071 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17283385 original size:159 final size:158
Alignment explanation
Indices: 17283096--17283387 Score: 354
Period size: 159 Copynumber: 1.8 Consensus size: 158
17283086 GGGTTACGGT
* * * * * * *
17283096 AGCAGGATCGGTAGCACGCAGAGGGGATCGGGTCGATCTCCGGCTTGTGCATTCTGCCTCTTCGG
1 AGCAGGACCGGTAGCACGCAGAGGGGACCGGGCCGATCTCCGACTTGCGCATTATGCCTCTCCGG
* * * ** * * *
17283161 GCGACTGAGTGCTTGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCT
66 GCGACTCAGCGCTCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
17283226 AAGCCCCAGTCAGACCATGGATTGTGGC
131 AAGCCCCAGTCAGACCATGGATTGTGGC
*
17283254 AGCAGGACCGGTAGCACGGAGAGGGGGACCGGGCCGATC-CCTGACTTGCGCATTATGCCTCTCC
1 AGCAGGACCGGTAGCACGCAGA-GGGGACCGGGCCGATCTCC-GACTTGCGCATTATGCCTCTCC
** ** *
17283318 GGTTGGTTCAGCGCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-G
64 GGGCGACTCAGCGCTCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATG
17283382 TCTAAG
128 TCTAAG
17283388 ATTGGACCAG
Statistics
Matches: 110, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
158 22 0.20
159 86 0.78
160 2 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (158 bp):
AGCAGGACCGGTAGCACGCAGAGGGGACCGGGCCGATCTCCGACTTGCGCATTATGCCTCTCCGG
GCGACTCAGCGCTCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCCAGTCAGACCATGGATTGTGGC
Found at i:17283518 original size:158 final size:156
Alignment explanation
Indices: 17283044--17283545 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 156
17283034 CCCAGTCTAA
* *
17283044 GCATACAGAGTTCATTTCCA-GTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCAGGATCGGT
1 GCATACAGAGTTCA-TTCCATGTCTAAGATCGAACCAGACCGA-GGTTGCGGCAGCAGGATCGGT
* * * * *
17283108 AGCACGCAGAGGGGATCGGGTCGAT-CTCCGGCTTGTGCATTCTGCCTCT-TCGGGCGACTGAGT
64 AGCACGCAGGGGGGA-CGGGTCGATCCT-CGGCTTGCGCATTCTGCCTCTCT-GGTCGGCTGAGC
* *
17283171 GCTTGCACGCCCATTTTGTGGGTTGGCTTAG
126 GCTCGCACGCTCATTTTGTGGGTTGGCTTAG
** * ** * ** * *
17283202 GCATAGGGAGTTCATTTCATGTCTAAGCCCCAGTCAGACC-ATGGATTGTGGCAGCAGGACCGGT
1 GCATACAGAGTTCATTCCATGTCTAAGATCGAACCAGACCGA-GG-TTGCGGCAGCAGGATCGGT
* * * * * * * *
17283266 AGCACGGAGAGGGGGACCGGGCCGATCC-CTGACTTGCGCATTATGCCTCTCCGGTTGGTTCAGC
64 AGCACGCAG-GGGGGA-CGGGTCGATCCTC-GGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGC
** *
17283330 GCTCGCACGCTCATTTCATGGGTTGACTTAG
126 GCTCGCACGCTCATTTTGTGGGTTGGCTTAG
* * * * * *
17283361 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCAGACCGAGCGTTGCAGCAGTAGGATCGAT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAG-GTTGCGGCAGCAGGATCGGT
* * *
17283425 AGCATGCAGGGGGGACATGGTCGATCCTCGGCTTGCACATTCTGCCTCTCTGGTCGGCTGAGCGC
64 AGCACGCAGGGGGGAC-GGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
* * *
17283490 CCGCACACTCGTTTTGTGGGTTGGCTTAG
128 TCGCACGCTCATTTTGTGGGTTGGCTTAG
* *
17283519 GCATCCAGAGTTAATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
17283546 CATACGGAGT
Statistics
Matches: 266, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
157 11 0.04
158 137 0.52
159 113 0.42
160 5 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGTTGCGGCAGCAGGATCGGTAG
CACGCAGGGGGGACGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCTCG
CACGCTCATTTTGTGGGTTGGCTTAG
Found at i:17285006 original size:26 final size:26
Alignment explanation
Indices: 17284968--17285020 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17284958 GTTGACTTAG
* *
17284968 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
17284994 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
17285020 G
1 G
17285021 ATCGGGCCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:17285618 original size:159 final size:158
Alignment explanation
Indices: 17285450--17285812 Score: 378
Period size: 158 Copynumber: 2.3 Consensus size: 158
17285440 CGCACTCTCA
* *
17285450 TTTCATGGGTTGTCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGA-TCGAGGA
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACT-GAGGA
* ** * * * *
17285513 TTGTGGCAGCGGGACCGGTAGCATGTAAAGG-GGGATCAGGTCGATCCTCGGGTTACGCATTATG
64 TTGTGGCAGCAGGACCGACAGCACGT--AGGAGGGATCAGGTCGATCCCCGGCTTACGCATTATA
17285577 CCTCTCCGATCTG-CTCAAC-TCCCATACGCTCG
127 CCTCTCCGATC-GACTCAACGT-CCATACGCTCG
* ** * * *
17285609 TTTCATGGGTTGACTTAGGCACACGGAGTTCATTCCCA-GTCTAAGATCGGACTAGACTGAGGGT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGACTGAGGAT
* * * * ** *
17285673 TGTGGCAGTAGGATCGACAGCACGTAGGAGGGGTCAGGTCGGTCCCCGGCTTGTGCATTCTACCT
65 TGTGGCAGCAGGACCGACAGCACGTAGGAGGGATCAGGTCGATCCCCGGCTTACGCATTATACCT
* * *
17285738 CTCCGATCGACTGAGCGTCCGTACGCTCG
130 CTCCGATCGACTCAACGTCCATACGCTCG
* *
17285767 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17285813 ATACTGAGTT
Statistics
Matches: 168, Mismatches: 29, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 7 0.04
158 89 0.53
159 68 0.40
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.27
Consensus pattern (158 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACTGAGGATT
GTGGCAGCAGGACCGACAGCACGTAGGAGGGATCAGGTCGATCCCCGGCTTACGCATTATACCTC
TCCGATCGACTCAACGTCCATACGCTCG
Found at i:17285815 original size:26 final size:26
Alignment explanation
Indices: 17285785--17285837 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17285775 GTTGGCTTAG
17285785 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
17285811 GCATACTGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17285837 G
1 G
17285838 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17286010 original size:195 final size:195
Alignment explanation
Indices: 17285677--17286419 Score: 734
Period size: 195 Copynumber: 3.9 Consensus size: 195
17285667 GAGGGTTGTG
* * * * * ** * *
17285677 GCAGTAGGATCGACAGCACGTAGGAGGGGTCAGGTCGGTCCCCGGCTTGTGCATTCTACCTCTCC
1 GCAGTAGGATCGACAGCATGCAGGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTC
* * * * **
17285742 GATCGACTGAGCGTCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
66 GACCGACTGAGC-TCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCACAT
*
17285807 CTAAGCATACTG-AGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTACAGTAGCAGGAC
130 CTAAGCATA-TGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGTAGCAGGAC
17285871 CA
194 CA
* * *
17285873 GCAGTAGGATCGACAGCATGCAGG-GGGATCGGATCGATCCCTGGCTTACGCATTCTGCCTCATC
1 GCAGTAGGATCGACAGCATGCAGGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTC
* * * * * * *
17285937 GGCCGGCTGAGCTCTCGTACGCTCGTTTCGCGGGTTTACTTAGGCATACAGAGTTCATCCCCCAT
66 GACCGACTGAGCTC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCACAT
* * *
17286002 CTAAGCATATGAAGTTCATTCTCAGTCTATGATCAGACTGGATCGAGGG-T----T-GC-GG--C
130 CTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGTAGCAGGACC
17286058 -
195 A
* * * * * *
17286058 G--GTAGGATCGACAGCACATAC-GG-GGG-TCGGGTCGATCCCCAGCTTGCTCATTTTGTCTCT
1 GCAGTAGGATCGACAG--CATGCAGGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCT
* * * * * *
17286118 TTGACCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATAC-GAAGTTCATTCCA
64 TCGACCGACTGAGC-TCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCA
** * * * * *
17286182 TGTCTAAGCACACTG-AGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTACAGCAGCAA
127 CATCTAAGCATA-TGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGTAGCAG
17286246 GACCA
191 GACCA
* * * * * * * *
17286251 GCAGCAGGATCGGCAGCAGGCAGGGAGGGACCGGGCCAATCCCCGACTTATGCATTCTGCCTCTT
1 GCAGTAGGATCGACAGCATGCA-GGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTT
*
17286316 CGACCGACTGAGCTCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCCCA
65 CGACCGACTGAGCTCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCACA
17286380 GTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGAC
129 -TCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGAC
17286420 TGAACCAAGG
Statistics
Matches: 438, Mismatches: 82, Indels: 53
0.76 0.14 0.09
Matches are distributed among these distances:
182 1 0.00
183 129 0.29
184 9 0.02
185 5 0.01
186 1 0.00
188 2 0.00
189 4 0.01
190 2 0.00
192 1 0.00
193 4 0.01
194 5 0.01
195 136 0.31
196 32 0.07
197 106 0.24
198 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (195 bp):
GCAGTAGGATCGACAGCATGCAGGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTC
GACCGACTGAGCTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCACATC
TAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGTAGCAGGACCA
Found at i:17286190 original size:183 final size:183
Alignment explanation
Indices: 17285878--17286571 Score: 578
Period size: 183 Copynumber: 3.7 Consensus size: 183
17285868 GACCAGCAGT
* * * * * * * * * *
17285878 AGGATCGACAGCATGCAGG-GGGATCGGATCGATCCCTGGCTTACGCATTCTGCCTCATCGGCCG
1 AGGATCGGCAGCACGTAGGAGGGACCGGGTCGATCCC-CGCTTGCTCATTCTGCCTCTTCGACCG
* * * * ***
17285942 GCTGAGCTCTCGTACGCTCGTTTCGCGGGTTTACTTAGGCATACAGAGTTCATCCCCCATCTAAG
65 GCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAG
* * *
17286007 CATATGAAGTTCATTCTCAGTCTATGATCAGACTGGATCGAGGGTTGCGGCGGT
130 CATATGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCGGC
* * * * * *
17286061 AGGATCGACAGCACATACGG-GGG-TCGGGTCGATCCCCAGCTTGCTCATTTTGTCTCTTTGACC
1 AGGATCGGCAGCACGTA-GGAGGGACCGGGTCGATCCCC-GCTTGCTCATTCTGCCTCTTCGACC
* * * * *
17286124 GGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATAC-GAAGTTCATTCCATGTCTA
64 GGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATCCCATGTCTA
* *
17286188 AGCACACTG-AGTTCATTCCCAGTCTAAGATCAGA-TCAGATCGAGGGTTACAGCAGCAAGACCA
128 AGCATA-TGAAGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGGTT---GC-G---G--C-
17286251 GCAGC
181 G--GC
* * * * *
17286256 AGGATCGGCAGCAGGCAGGGAGGGACCGGGCCAATCCCCGACTT-ATGCATTCTGCCTCTTCGAC
1 AGGATCGGCAGCACGTA-GGAGGGACCGGGTCGATCCCCG-CTTGCT-CATTCTGCCTCTTCGAC
* *
17286320 CGACTGAGCTCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCT
63 CGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCT
* * * * *
17286384 AAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACTGAACCAAGGGTTGTGGCAGC
127 AAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCGGC
* * * *
17286441 AGGATCGGCAGCACGTAGGAGGGCCCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGATCG
1 AGGATCGGCAGCACGTAGGAGGGACCGGGTCGATCCCC-GCTTGCTCATTCTGCCTCTTCGACCG
** * * * * * ** *
17286506 G-TGGAGAACCCGCATGGTCGTTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GCT-GAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAA
17286570 GC
129 GC
17286572 CCCAGCCAGA
Statistics
Matches: 406, Mismatches: 76, Indels: 57
0.75 0.14 0.11
Matches are distributed among these distances:
182 2 0.00
183 137 0.34
184 93 0.23
185 18 0.04
186 2 0.00
187 1 0.00
188 1 0.00
190 2 0.00
192 1 0.00
193 2 0.00
194 1 0.00
195 16 0.04
196 7 0.02
197 118 0.29
198 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (183 bp):
AGGATCGGCAGCACGTAGGAGGGACCGGGTCGATCCCCGCTTGCTCATTCTGCCTCTTCGACCGG
CTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
ATATGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCGGC
Found at i:17286447 original size:380 final size:377
Alignment explanation
Indices: 17285635--17286571 Score: 1193
Period size: 378 Copynumber: 2.5 Consensus size: 377
17285625 AGGCACACGG
* *
17285635 AGTTCATTCCCAGTCTAAGATCGGACT-AGACTGAGGGTTGTGGCAGTAGGATCGACAGCACGTA
1 AGTTCATTCCCAGTCTAAGATCAGACTGA-ACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTA
* * * * * *
17285699 GGAGGGGTCAGGTCGGTCCCCGGCTTG-TGCATTCTACCTCTCCGATCGACTGAGCGTCCGTACG
65 -G-GGGGTCGGGTCGATCCCCGGCTTGCT-CATTCTACCTCTTCGATCGGCTGAGCGCCCGCACG
*
17285763 CTCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATACTGAGTTCATT
127 CTCGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCACACTGAGTTCATT
* * * * * *
17285827 CCTAGTCTAAGATCAGACCGGATCGAGGGTTACAGTAGCAGGACCAGCAGTAGGATCGACAGCAT
191 CCCAGTCTAAGATCAGACCAGATCGAGGGTTACAGCAGCAAGACCAGCAGCAGGATCGACAGCAG
* * * * * * * *
17285892 GCAGGGGGATCGGATCGATCCCTGGCTTACGCATTCTGCCTCATCGGCCGGCTGAGCTCTCGTAC
256 GCAGGGGGACCGGACCAATCCCCGACTTACGCATTCTGCCTCATCGACCGACTGAGCTCTCGCAC
*
17285957 GCTCGTTTCGCGGGTTTACTTAGGCATACAGAGTTCATCCCCCATCTAAGCATATGA
321 GCTCGTTTCGCGGGTTGACTTAGGCATACAGAGTTCATCCCCCATCTAAGCATATGA
* * * * * * *
17286014 AGTTCATTCTCAGTCTATGATCAGACTGGATCGAGGGTTGCGGCGGTAGGATCGACAGCACATAC
1 AGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTA-
* * ** * * *
17286079 GGGGGTCGGGTCGATCCCCAGCTTGCTCATTTTGTCTCTTTGACCGGCTGAGCGCCCGCACACTC
65 GGGGGTCGGGTCGATCCCCGGCTTGCTCATTCTACCTCTTCGATCGGCTGAGCGCCCGCACGCTC
* *
17286144 ATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACACTGAGTTCATTCCCA
130 GTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACACTGAGTTCATTCCCA
* *
17286209 GTCTAAGATCAGATCAGATCGAGGGTTACAGCAGCAAGACCAGCAGCAGGATCGGCAGCAGGCAG
195 GTCTAAGATCAGACCAGATCGAGGGTTACAGCAGCAAGACCAGCAGCAGGATCGACAGCAGGCA-
* * *
17286274 GGAGGGACCGGGCCAATCCCCGACTTATGCATTCTGCCTCTTCGACCGACTGAGCTC-CTGCACG
259 GG-GGGACCGGACCAATCCCCGACTTACGCATTCTGCCTCATCGACCGACTGAGCTCTC-GCACG
*
17286338 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCCAGTCTAAGCATATGA
322 CTCGTTTCGCGGGTTGACTTAGGCATACAGAGTTCATCCCCCA-TCTAAGCATATGA
* * *
17286394 AGTTCATTCCCAGTCTAAGATCAGACTGAACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTAG
* * ** * *
17286459 GAGGGCCCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGATCGG-TGGAGAACCCGCATGG
66 G-GGG-TCGGGTCGATCCCCGGCTTGCTCATTCTACCTCTTCGATCGGCT-GAGCGCCCGCACGC
* * *
17286523 TCGTTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 TCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
17286572 CCCAGCCAGA
Statistics
Matches: 473, Mismatches: 75, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
378 165 0.35
379 67 0.14
380 154 0.33
381 87 0.18
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (377 bp):
AGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTAG
GGGGTCGGGTCGATCCCCGGCTTGCTCATTCTACCTCTTCGATCGGCTGAGCGCCCGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACACTGAGTTCATTCCCAG
TCTAAGATCAGACCAGATCGAGGGTTACAGCAGCAAGACCAGCAGCAGGATCGACAGCAGGCAGG
GGGACCGGACCAATCCCCGACTTACGCATTCTGCCTCATCGACCGACTGAGCTCTCGCACGCTCG
TTTCGCGGGTTGACTTAGGCATACAGAGTTCATCCCCCATCTAAGCATATGA
Found at i:17287778 original size:26 final size:26
Alignment explanation
Indices: 17287742--17287793 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17287732 TTGGCTTAGC
17287742 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
17287768 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17287794 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17288188 original size:159 final size:156
Alignment explanation
Indices: 17287767--17288205 Score: 412
Period size: 159 Copynumber: 2.8 Consensus size: 156
17287757 CCATGTCTAA
* ** * * *
17287767 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTCTGGCAGCAGGAT-TAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCGGGATCGA-C
* * * * *
17287831 AGCACGCATGGGGGG---A-G-ATCCCTGGCTTACACATTCTGCCTCTCATTTAGCTGAGCACCT
65 AGCACGCAAGGGGGGACCAGGCATCCCCGGCTTACACATTCTGCCTCTCAGTTAGCTCAGCACCC
*
17287891 GAATGCCTGTTTCGTGTGTTGGATGAG
130 GAATGCCTGTTTCGTGTGGTGGATGAG
* ** *
17287918 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAAGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCAGCGGGATCGA
* * * * * * * *
17287981 CAGCATGC-AGAAGGGAACCAGGCTGATCCCCGACTTACGCATTATGCCTTTCCAGTTGGCTCAG
64 CAGCACGCAAG-GGGGGACCAGGC--ATCCCCGGCTTACACATTCTGCCTCT-CAGTTAGCTCAG
** * *
17288045 TGCCCGAATGCTTGTTTCGTG-GGTGGAATTAG
125 CACCCGAATGCCTGTTTCGTGTGGTGG-ATGAG
* * *
17288077 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCGGGATCGACA
* *
17288142 GCACGCAAGGGGGGACCAGGACAATCCCCGGCTTGCACATTCTGCCTCTCTGTTAGGCTCAGCA
66 GCACGCAAGGGGGGACCAGG-C-ATCCCCGGCTTACACATTCTGCCTCTCAGTTA-GCTCAGCA
17288206 GAGAGTTTGA
Statistics
Matches: 223, Mismatches: 47, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
150 4 0.02
151 56 0.25
152 2 0.01
154 1 0.00
155 1 0.00
158 32 0.14
159 121 0.54
160 6 0.03
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCGGGATCGACA
GCACGCAAGGGGGGACCAGGCATCCCCGGCTTACACATTCTGCCTCTCAGTTAGCTCAGCACCCG
AATGCCTGTTTCGTGTGGTGGATGAG
Found at i:17288917 original size:25 final size:26
Alignment explanation
Indices: 17288888--17288939 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17288878 GTTGACTTAG
*
17288888 GCATACAAAGTTCA-TCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTATAA
17288913 GCATACAAAGTTCATTCCCAGTATAA
1 GCATACAAAGTTCATTCCCAGTATAA
17288939 G
1 G
17288940 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTATAA
Found at i:17289241 original size:159 final size:159
Alignment explanation
Indices: 17289066--17289416 Score: 386
Period size: 158 Copynumber: 2.2 Consensus size: 159
17289056 CATAGGTTGG
* * * * *
17289066 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGCGGGA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAAGGTTGTGGCAGCAGGA
* * * * *
17289130 CCGACAGCACGCAGAGAGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTC-CGTCCGGG
66 CCGACAACACGCAG-GAGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCTAGT-CGAG
** *
17289194 TCAATGCCCGCACGCTCGTTTCGTGGGTTAA
129 TCAACACCCGCACGCTCGTTTCCTGGGTTAA
* * * *
17289225 CTTAGGCATACAGAGTTCATTCC-TAGTCTAA-CATCGGACCGGACCGAAGGTTGTGGCAGCAGG
1 CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAAGGTTGTGGCAGCAGG
** * * * * *
17289288 ATTGACAACATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCTAGTCGATT
65 ACCGACAACACGCAGGAGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCTAGTCGAGT
* * **
17289353 GAGCACCCGCACGCTCGTTTCCTGGGTTGG
130 CAACACCCGCACGCTCGTTTCCTGGGTTAA
*
17289383 CTTTGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17289417 TGCGGAGTTC
Statistics
Matches: 157, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
158 93 0.59
159 64 0.41
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAAGGTTGTGGCAGCAGGA
CCGACAACACGCAGGAGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCTAGTCGAGTC
AACACCCGCACGCTCGTTTCCTGGGTTAA
Found at i:17289424 original size:26 final size:26
Alignment explanation
Indices: 17289388--17289440 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17289378 GTTGGCTTTG
17289388 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17289414 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17289440 G
1 G
17289441 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17289633 original size:26 final size:26
Alignment explanation
Indices: 17289597--17289647 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17289587 GTTGACTTAG
* *
17289597 GCATACGAAGTTGA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
17289623 GCATACAAAGTTCATTCCCAGTCTA
1 GCATACAAAGTTCATTCCCAGTCTA
17289648 CGATCGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:17289979 original size:26 final size:26
Alignment explanation
Indices: 17289943--17289992 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17289933 GGCTTAGGCA
17289943 TACGAAGTTCATTCC-ATGTCTAAGCT
1 TACGAAGTTCATTCCTA-GTCTAAGCT
*
17289969 TACGGAGTTCATTCCTAGTCTAAG
1 TACGAAGTTCATTCCTAGTCTAAG
17289993 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (26 bp):
TACGAAGTTCATTCCTAGTCTAAGCT
Found at i:17290727 original size:25 final size:26
Alignment explanation
Indices: 17290661--17290734 Score: 105
Period size: 26 Copynumber: 2.9 Consensus size: 26
17290651 ACTTAGGCAT
17290661 ACGGAGTTCATCCCCAGTCTAAGCAC
1 ACGGAGTTCATCCCCAGTCTAAGCAC
* *
17290687 ACGGAGTTCATCCCCAATCTAAGCAT
1 ACGGAGTTCATCCCCAGTCTAAGCAC
* *
17290713 A-TGAGTTCATTCCCAGTCTAAG
1 ACGGAGTTCATCCCCAGTCTAAG
17290735 ATCGGACCAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 18 0.42
26 25 0.58
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (26 bp):
ACGGAGTTCATCCCCAGTCTAAGCAC
Found at i:17291085 original size:26 final size:26
Alignment explanation
Indices: 17291049--17291101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17291039 GTTGACTTAG
17291049 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17291075 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17291101 G
1 G
17291102 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17291520 original size:158 final size:157
Alignment explanation
Indices: 17291082--17291576 Score: 494
Period size: 158 Copynumber: 3.1 Consensus size: 157
17291072 TAAGCATATG
* * * * * *
17291082 GAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATTGGCAGCACAT
1 GAGTTCATT-CCATGTCTAAGATCAAACC-GAACGAGGGTTGCGGCAGCAGGATTGACAGCACGT
* * * * * * * * * * *
17291146 AGGGGGAATCGGGCCGGTCCCTGGCTTACGCATTCTCCCTCTCCGGCCGGTTGAGCACCCACAAG
64 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACG
* * *
17291211 CCCATTTTGTGGGTTGGCTTAGGCATA-A
129 CTCGTTTCGTGGGTTGGCTTAGGCATACA
** * * * * * ** *
17291239 GGAGTTCATTCCATGTCTAAGCCCCAGCCGAAATGAGGGTTGTGGTAGC-GAGACCGACAGCAAG
1 -GAGTTCATTCCATGTCTAAGATCAAACCG-AACGAGGGTTGCGGCAGCAG-GATTGACAGCACG
* * * * * *
17291303 CAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGCGCCCGCA
63 TAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCA
* * * *
17291368 CGCTCGTTTCATGGGTTGACTTATGTATACA
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATACA
*
17291399 GAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATTGACAGCACGT
1 GAGTTCATT-CCATGTCTAAGATCAAACC-GAACGAGGGTTGCGGCAGCAGGATTGACAGCACGT
* *
17291463 AGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACG
64 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACG
*
17291528 CTCGTTTCGTGGGTTGGCTTAGGCATACG
129 CTCGTTTCGTGGGTTGGCTTAGGCATACA
17291557 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
17291577 CATACAGGGT
Statistics
Matches: 264, Mismatches: 64, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
157 8 0.03
158 137 0.52
159 113 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCAAACCGAACGAGGGTTGCGGCAGCAGGATTGACAGCACGTAG
GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACA
Found at i:17291588 original size:26 final size:26
Alignment explanation
Indices: 17291550--17291602 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17291540 GTTGGCTTAG
17291550 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17291576 GCATACAGG-GTTCATTCCCAGTCTAA
1 GCATAC-GGAGTTCATTCCCAGTCTAA
17291602 G
1 G
17291603 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17292488 original size:26 final size:26
Alignment explanation
Indices: 17292457--17292509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17292447 GTTGACTTAG
*
17292457 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
17292483 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17292509 G
1 G
17292510 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17293823 original size:159 final size:159
Alignment explanation
Indices: 17293598--17293951 Score: 374
Period size: 158 Copynumber: 2.2 Consensus size: 159
17293588 CCACACGCCT
* * * * * *
17293598 GTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTTTAAGCCCCAATCGGACTGAGGG
1 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATATAAGCACCAACCGGACTGAAGG
* * * * *
17293662 TTATGGCAGT-GAGACCGGTAACACGTAGAGGGGGACTGGGCTGATCCTCGACTTACGCATTATG
66 TTACGGCAGTAG-GACCGATAACACGTAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTATG
* * **
17293726 CCTATCCGATCGGCTCAACGCCTGCACACTC
129 CCTATCCAATCGGCTCAACCCCCACACACTC
* *
17293757 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATATAAG-ATCAGACCGGACTGAAG
1 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATATAAGCACCA-ACCGGACTGAAG
* * * ** *
17293820 GTTACGGCAGTAGGATCGATAGCACGTAGGGGGTACCGGGCCGATCCCCGACTTGTGCATTCTGC
65 GTTACGGCAGTAGGACCGATAACACGTAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGC
* * * * *
17293885 CTCTCCAATCGGTTGAGCCCCCATACACTC
130 CTATCCAATCGGCTCAACCCCCACACACTC
** *
17293915 GTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCC
1 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
17293952 ATGTCTAAGC
Statistics
Matches: 160, Mismatches: 32, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
158 85 0.53
159 71 0.44
160 4 0.03
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (159 bp):
GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATATAAGCACCAACCGGACTGAAGG
TTACGGCAGTAGGACCGATAACACGTAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCC
TATCCAATCGGCTCAACCCCCACACACTC
Found at i:17293933 original size:158 final size:158
Alignment explanation
Indices: 17293460--17293951 Score: 454
Period size: 159 Copynumber: 3.1 Consensus size: 158
17293450 CCCAGTCTAA
* * * * * * ** * *
17293460 GCATATGGAGTTCATTCCCAGTCTAATATCAGACCGGACCGAGGGTTGCGACAACAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGACTGAGGGTTACGGCAGTAGGATCGATA
* ** * * * * *
17293525 GCACGTAGGGGGGA-CGGGTCGATCCCCGGTTTGTGCATTCTTCCTTTCTGGTAGGCTGAGCGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTATCCGATCGGCTGAGCGCC
*
17293589 CACACGC-CTGTTTTGTGGGTTGGCTTAG
131 CACACACTC-GTTTTGTGGGTTGGCTTAG
* * ** * * *
17293617 GCATAGGGAGTTCATT-CCATGTTTAAGCCCCA-ATCGGACTGAGGGTTATGGCAGT-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTATAAG-ATCAGACCGGACTGAGGGTTACGGCAGTAG-GATCG
* * * * * ** * * *
17293679 GTAACACGTAGAGGGGGACTGGGCTGATCCTCGACTTACGCATTATGCCTATCCGATCGGCTCAA
63 ATAGCACGTAG-GGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTATCCGATCGGCTGAG
** *
17293744 CGCCTGCACACTCGTTTTGTGGGTTGACTTAG
127 CGCCCACACACTCGTTTTGTGGGTTGGCTTAG
* *
17293776 GCATACGGAGTTCATTCCCAATATAAGATCAGACCGGACTGAAGGTTACGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGACTGAGGGTTACGGCAGTAGGATCGATA
* * * * *
17293841 GCACGTAGGGGGTACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCAATCGGTTGAGCCCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTATCCGATCGGCTGAGCGCC
* **
17293906 CATACACTCGTTTCATGGGTTGGCTTAG
131 CACACACTCGTTTTGTGGGTTGGCTTAG
*
17293934 GCATACGGAGTTAATTCC
1 GCATACGGAGTTCATTCC
17293952 ATGTCTAAGC
Statistics
Matches: 258, Mismatches: 68, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
156 3 0.01
157 48 0.19
158 93 0.36
159 109 0.42
160 5 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGACTGAGGGTTACGGCAGTAGGATCGATA
GCACGTAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTATCCGATCGGCTGAGCGCC
CACACACTCGTTTTGTGGGTTGGCTTAG
Found at i:17294350 original size:26 final size:26
Alignment explanation
Indices: 17294313--17294365 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17294303 GTTGACTTAG
*
17294313 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17294339 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17294365 G
1 G
17294366 ATCAGGCTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17294670 original size:159 final size:158
Alignment explanation
Indices: 17294470--17294841 Score: 407
Period size: 157 Copynumber: 2.4 Consensus size: 158
17294460 CTGAGTGCCT
* * * *
17294470 ACACGCCCATTTCGTGGGTT-AGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCA
1 ACACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCA
* * *
17294533 GACCGAGGGTTATGGCAGCAGGATCGACAGCATGTAGAGGGGGA-TCGGGTCGATCC-TCGGCTT
65 GACCGAGGGTTACGGCAGCAGGATCGACAGCACG-A-AGGGGGACT-GGGTCGATCCGT-AGCTT
* * *
17294596 GTGCATTATGCCTCT-TCGACCGGCTCATCACCC
126 GTGCATTATGCCTCTCT-AACCGACTCAGCACCC
* * * * *
17294629 ACACGTTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCG
1 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCA
* *
17294692 GACCGATGGTTGCGGCAGCAGGATCGACAGCACGAAGGGGGACTGGGTCGATCCGTAGCTTGTGC
65 GACCGAGGGTTACGGCAGCAGGATCGACAGCACGAAGGGGGACTGGGTCGATCCGTAGCTTGTGC
* * **
17294757 ATTCTGCCTCTCTAACCGACTGAGGGCCC
130 ATTATGCCTCTCTAACCGACTCAGCACCC
* * * *
17294786 GCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17294842 TACAGAGTTC
Statistics
Matches: 177, Mismatches: 28, Indels: 17
0.80 0.13 0.08
Matches are distributed among these distances:
157 90 0.51
158 10 0.06
159 76 0.43
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAG
ACCGAGGGTTACGGCAGCAGGATCGACAGCACGAAGGGGGACTGGGTCGATCCGTAGCTTGTGCA
TTATGCCTCTCTAACCGACTCAGCACCC
Found at i:17294817 original size:157 final size:159
Alignment explanation
Indices: 17294441--17294841 Score: 447
Period size: 159 Copynumber: 2.5 Consensus size: 159
17294431 TGACTTGCAT
* * * * * * *
17294441 ATTCTGCCTCTCTGGCCGACTGAGTGCCTACACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGA
1 ATTCTGCCTCTCTGACCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* * *
17294506 GTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGATCGACAGCATGTAGA
66 GTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGTAGA
*
17294571 GGGGGATCGGGTCGATCCTCGGCTTGTGC
131 GGGGGATCGGGTCGATCCTCAGCTTGTGC
* * * * * * * * *
17294600 ATTATGCCTCT-TCGACCGGCTCATCACCCACACGTTCGTTTTGTGGGTTGACTTATGCATACGG
1 ATTCTGCCTCTCT-GACCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
17294664 AGTTCATTCC-TAGTCTAAG-ATCAGACCGGACCGATGGTTGCGGCAGCAGGATCGACAGCACG-
65 AGTTCATTCCAT-GTCTAAGCACCAG-CCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGT
17294726 A-AGGGGGA-CTGGGTCGATCCGT-AGCTTGTGC
128 AGAGGGGGATC-GGGTCGATCC-TCAGCTTGTGC
* * * * *
17294757 ATTCTGCCTCTCTAACCGACTGAGGGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
1 ATTCTGCCTCTCTGACCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
17294822 GTTCATTCCATGTCTAAGCA
66 GTTCATTCCATGTCTAAGCA
17294842 TACAGAGTTC
Statistics
Matches: 196, Mismatches: 38, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.01
157 90 0.46
158 10 0.05
159 95 0.48
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (159 bp):
ATTCTGCCTCTCTGACCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGTAGA
GGGGGATCGGGTCGATCCTCAGCTTGTGC
Found at i:17294843 original size:26 final size:26
Alignment explanation
Indices: 17294813--17294865 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17294803 GTTGGCTTAG
*
17294813 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
17294839 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17294865 G
1 G
17294866 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17301081 original size:26 final size:26
Alignment explanation
Indices: 17301003--17301072 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
17300993 GTTGGCTTAG
17301003 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
* *
17301029 GTATATAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17301055 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
17301073 CAGTTTAAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17301445 original size:26 final size:26
Alignment explanation
Indices: 17301411--17301460 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17301401 TTGACTTCGA
*
17301411 CATATGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
17301437 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATCCCCAGTCTA
17301461 TGATCGGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:17301657 original size:111 final size:111
Alignment explanation
Indices: 17301445--17301664 Score: 287
Period size: 111 Copynumber: 2.0 Consensus size: 111
17301435 AGCATACGGA
* * * * * * * *
17301445 GTTCATTCCCAGTCTATGATCGGATCGGACTGATGGTTACGGTAGTAGGATCGGCATCATGCGGG
1 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTACGGTAGCAGGATCGGCAACACGCGGG
* ** *
17301510 GGGGACCGGGTCGATCCCCGGCCTGCGTATTATGCCTCTCCGATTG
66 GGGGACCGGGCCGATCCCCAACCTGCGCATTATGCCTCTCCGATTG
**
17301556 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGTGGTAGCAGGATCGGCAACACGCGGG
1 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTACGGTAGCAGGATCGGCAACACGCGGG
* * *
17301621 GGGGACCGGGCCGATCCCTAACTTGCGCATTCTGCCTCTCCGAT
66 GGGGACCGGGCCGATCCCCAACCTGCGCATTATGCCTCTCCGAT
17301665 CGGATAAGCG
Statistics
Matches: 92, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
111 92 1.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (111 bp):
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTACGGTAGCAGGATCGGCAACACGCGGG
GGGGACCGGGCCGATCCCCAACCTGCGCATTATGCCTCTCCGATTG
Found at i:17302625 original size:26 final size:26
Alignment explanation
Indices: 17302596--17302648 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17302586 GTTAACTTAG
* *
17302596 GCATACGGAGTTCA-TCCGCAGTCTAA
1 GCATACGAAATTCATTCC-CAGTCTAA
17302622 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
17302648 G
1 G
17302649 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:17303050 original size:159 final size:154
Alignment explanation
Indices: 17302622--17303124 Score: 438
Period size: 159 Copynumber: 3.2 Consensus size: 154
17302612 CGCAGTCTAA
* * * * * *
17302622 GCATACGAAATTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGACAGTAGGATCTGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGATAGCAGGAT-TGC
* * * * * * *
17302686 AGCACGCAGGGGGGATCAGGCTGATCCCCGGCTTGCGCAATCTACCTCTCCGGCCGACTGAGCAC
64 AGCACGCAGGGGGGATCGGGTTGATCCCTGGCTTG-GCATTCTGCCTCTCCGGCCGGCTGAGGAC
*
17302751 CTGCACGCCCGTTTCGTGCGTTGGCTTAG
128 C-GCACGCTCGTTTCGTG-GTTGGCTTAG
* ** * ** * * *
17302780 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATTGAGGGTTGTGGTAGCGGGACCTT-C
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGATAGCAGGA--TTGC
* * * * * ** *
17302844 AGCACGCAGAAGGGGATCGGATCGATCTCTGGCTTGGACATTATGCCTCTCCGATCGGCTCAGTG
64 AGCACGCAG-GGGGGATCGGGTTGATCCCTGGCTTGG-CATTCTGCCTCTCCGGCCGGCTGAG-G
* * **
17302909 GCCGCACGCTCATTTCGTGGTTTAACTTAG
126 ACCGCACGCTCGTTTCGTGG-TTGGCTTAG
*
17302939 GCACACGGAGTTCATTACCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGATAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGATAGCAGGATTG-C
* *
17303003 AGCACGCATGGGGGGA-CTGGGTTGATCCCTGACTTGTGCATTCTGCCTCTTCGGCCGGCTGAGC
64 AGCACGCA-GGGGGGATC-GGGTTGATCCCTGGCTTG-GCATTCTGCCTCTCCGGCCGGCTGAG-
* **
17303067 GCCCGCACGCTCGTTTTATGGGTTGGCTTAG
125 GACCGCACGCTCGTTTCGT-GGTTGGCTTAG
*
17303098 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17303125 CATATGGAGT
Statistics
Matches: 266, Mismatches: 64, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
157 5 0.02
158 56 0.21
159 195 0.73
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGATAGCAGGATTGCAG
CACGCAGGGGGGATCGGGTTGATCCCTGGCTTGGCATTCTGCCTCTCCGGCCGGCTGAGGACCGC
ACGCTCGTTTCGTGGTTGGCTTAG
Found at i:17303295 original size:184 final size:185
Alignment explanation
Indices: 17302945--17303309 Score: 511
Period size: 184 Copynumber: 2.0 Consensus size: 185
17302935 TTAGGCACAC
* *
17302945 GGAGTTCATTACCAGTCTAAGATCGAACCGGACCGAGGGTTGCGATAGCAGGATTGACAGCACGC
1 GGAGTTCATTACCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
* * ** * * * *
17303010 ATGGGGGGACTGGGTTGATCCCTGACTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCAC
66 ATGGAGGGACTGGGCTGATCCCTGACTTCCGCATTCTACCTCTCCGGCAGGCTGAGCACCCGCAC
*
17303075 GCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAT
131 GCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAT
* * * * *
17303130 GGAGTTCGTTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGC
1 GGAGTTCATTACCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
*
17303195 A-GGAGGGA-TAGGGCTGATCCCTGGCTTCCGCATTCTACCTCTCCGGCAGGCTGAGCACCCGCA
66 ATGGAGGGACT-GGGCTGATCCCTGACTTCCGCATTCTACCTCTCCGGCAGGCTGAGCACCCGCA
* **
17303258 C-ATCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
130 CGCT-CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
17303310 CCCAGCCAGA
Statistics
Matches: 158, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
183 2 0.01
184 97 0.61
185 59 0.37
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (185 bp):
GGAGTTCATTACCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
ATGGAGGGACTGGGCTGATCCCTGACTTCCGCATTCTACCTCTCCGGCAGGCTGAGCACCCGCAC
GCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAT
Found at i:17303487 original size:502 final size:502
Alignment explanation
Indices: 17302557--17303654 Score: 1416
Period size: 502 Copynumber: 2.2 Consensus size: 502
17302547 CCCTCTGGTT
* * ** *
17302557 GGCTGAGCGCCCGCATGTTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCGCA-GTCTA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTA
* * * * *
17302621 AGCATACGAAATTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGTAGGATCTGT
65 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGGC
* * *
17302686 AGCACGCAGGGGGGATCAGGCTGATCCCCGGCTTGCGCAATCTACCTCTCCGGCCGACTGAGCAC
130 AGCACGCAGGAGGGATCAGGCTGATCCCCGGCTTCCGCAATCTACCTCTCCGGCAGACTGAGCAC
* * * *
17302751 CTGCACGCCCGTTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
195 CCGCACACCCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
* ** * * * *
17302816 GATTGAGGGTTGTGGTAGCGGGACCTTCAGCACGCAGAAGGGGATCGGATCGATCTCTGGCTTGG
260 GACTGAGGGTTGTGGTAGCGGGACCAGCAGCACGCAGAAGGGGACCGGACCAATCCCTGGCTTGG
* * ** * * *
17302881 ACATTATGCCTCTCCGATCGGCTCAGTGGCCGCACGCTCATTTCGTGGTTTAACTTAGGCACACG
325 ACATTATGCCTCTCCGACCAGCTCAACGCCCACACGCTCATTTCGTGGGTTAACTTAGGCACACG
* * * * *
17302946 GAGTTCATTACCAGTCTAAGATCGAACCGGACCGAGGGTTGCGATAGCAGGATTGACAGCACGCA
390 GAGTTCATTACCAGTCTAAGATCGAACAGGACCGAGGGTTACGATAGCAAGATCGACAGCACACA
* * * * * * **
17303011 TGGGGGGA-CTGGGTTGATCC-CTGACTTGTGCATTCTGCCTCTTCGGCC
455 GGGGGGGATC-GGATCGATCCTC-GACTTGCGCATTCTACCTCTCCAACC
** *
17303059 GGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
17303124 GCATATGGAGTTCGTTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGGCA
* * *
17303189 GCACGCAGGAGGGAT-AGGGCTGATCCCTGGCTTCCGCATTCTACCTCTCCGGCAGGCTGAGCAC
131 GCACGCAGGAGGGATCA-GGCTGATCCCCGGCTTCCGCAATCTACCTCTCCGGCAGACTGAGCAC
* * *
17303253 CCGCACATCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
195 CCGCACACCCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
* *
17303318 GACTGAGGGTTGTGGTAGCGGGACCAGCAGCACGTAGATGGGGACC-GAGCCAATCCCTGGCTTG
260 GACTGAGGGTTGTGGTAGCGGGACCAGCAGCACGCAGAAGGGGACCGGA-CCAATCCCTGGCTTG
* * * * * * *
17303382 CG-CATTATGCCTCTTCGGCCAGCTCAACGCCCACACGCTCGTTTTGTGGGTTGACTTATGCATA
324 -GACATTATGCCTCTCCGACCAGCTCAACGCCCACACGCTCATTTCGTGGGTTAACTTAGGCACA
* * * *
17303446 CGGAGTTCATTACCAGTCTAAGATCGGATAGGACTGAGGGTTACGGTAGCAAGATCGACAGCACA
388 CGGAGTTCATTACCAGTCTAAGATCGAACAGGACCGAGGGTTACGATAGCAAGATCGACAGCACA
17303511 CAGGGGGGGATCGGATCGATCCTCGACTTGCGCATTCTACCTCTCCAACC
453 CAGGGGGGGATCGGATCGATCCTCGACTTGCGCATTCTACCTCTCCAACC
* * * *
17303561 GACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGTGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
17303626 GCATACGGAGTTCATTCCCAGCCTAAGAT
66 GCATACGGAGTTCATTCCCAGTCTAAGAT
17303655 TTTGAGCCAC
Statistics
Matches: 509, Mismatches: 81, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
501 5 0.01
502 501 0.98
503 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (502 bp):
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGGAGGGATCAGGCTGATCCCCGGCTTCCGCAATCTACCTCTCCGGCAGACTGAGCACC
CGCACACCCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAG
ACTGAGGGTTGTGGTAGCGGGACCAGCAGCACGCAGAAGGGGACCGGACCAATCCCTGGCTTGGA
CATTATGCCTCTCCGACCAGCTCAACGCCCACACGCTCATTTCGTGGGTTAACTTAGGCACACGG
AGTTCATTACCAGTCTAAGATCGAACAGGACCGAGGGTTACGATAGCAAGATCGACAGCACACAG
GGGGGGATCGGATCGATCCTCGACTTGCGCATTCTACCTCTCCAACC
Found at i:17303651 original size:26 final size:26
Alignment explanation
Indices: 17303600--17303652 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17303590 GTTGGCTTAG
* * *
17303600 GCATATGGTGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
17303626 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
17303652 G
1 G
17303653 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17305235 original size:26 final size:26
Alignment explanation
Indices: 17305205--17305257 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17305195 GTTGGCTTAG
17305205 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17305231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17305257 G
1 G
17305258 ATGGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17306175 original size:26 final size:26
Alignment explanation
Indices: 17306139--17306191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17306129 GTTGACTTAG
*
17306139 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
*
17306165 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
17306191 G
1 G
17306192 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTCCATCCCCAGTCTAA
Found at i:17307781 original size:25 final size:26
Alignment explanation
Indices: 17307744--17307795 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17307734 GTTGACTTAG
17307744 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17307769 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17307795 G
1 G
17307796 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17308490 original size:27 final size:26
Alignment explanation
Indices: 17308437--17308490 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
17308427 GTTAGCTTAG
* *
17308437 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTATAA
17308463 GCATCACGGAGTTCATTCTC-GGTATAA
1 GCAT-ACGGAGTTCATTC-CAGGTATAA
17308490 G
1 G
17308491 ATTTTTAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.17
27 19 0.79
28 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTATAA
Found at i:17309186 original size:26 final size:26
Alignment explanation
Indices: 17309152--17309201 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17309142 TGACTTAGGT
*
17309152 ATACGGAGTTCATCCCCAGTCTAATC
1 ATACAGAGTTCATCCCCAGTCTAATC
*
17309178 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATCCCCAGTCTAA
17309202 GATCAGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAATC
Found at i:17310488 original size:26 final size:26
Alignment explanation
Indices: 17310450--17310502 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17310440 GTTGACTTAG
17310450 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
17310476 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17310502 G
1 G
17310503 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17311003 original size:26 final size:26
Alignment explanation
Indices: 17310952--17311004 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17310942 GTTGGCTTAG
**
17310952 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATAACTAA
17310978 GCATACGGAGTTCATTCCCA-AACTAA
1 GCATACGGAGTTCATT-CCATAACTAA
17311004 G
1 G
17311005 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATAACTAA
Found at i:17311200 original size:26 final size:26
Alignment explanation
Indices: 17311148--17311200 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17311138 GTTAGCTTAG
* *
17311148 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTATAA
17311174 GCATACGGAGTTCATTCTC-GGTATAA
1 GCATACGGAGTTCATTC-CAGGTATAA
17311200 G
1 G
17311201 ATTTTTAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTATAA
Found at i:17311904 original size:26 final size:26
Alignment explanation
Indices: 17311870--17311919 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17311860 TGACTTAGGT
*
17311870 ATACGGAGTTCATCCCCAGTCTAATC
1 ATACAGAGTTCATCCCCAGTCTAATC
*
17311896 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATCCCCAGTCTAA
17311920 GATCAGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAATC
Found at i:17313237 original size:25 final size:26
Alignment explanation
Indices: 17313200--17313250 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
17313190 GTTGACTTAG
*
17313200 GCATACAGAGTTCA-TCCCCATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
17313225 GCATACGGTGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17313251 AGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17313749 original size:26 final size:26
Alignment explanation
Indices: 17313697--17313750 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
17313687 GGGTTGGCTT
**
17313697 AGCATACGGAGTTCATTCCATGTCTA
1 AGCATACGGAGTTCATTCCATAACTA
17313723 AGCATACGGAGTTCATTCCCA-AACTA
1 AGCATACGGAGTTCATT-CCATAACTA
17313749 AG
1 AG
17313751 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCATAACTA
Found at i:17314642 original size:26 final size:26
Alignment explanation
Indices: 17314612--17314661 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17314602 TGACTTAGGT
17314612 ATACAGAGTTCATCCCCAGTCTAATC
1 ATACAGAGTTCATCCCCAGTCTAATC
*
17314638 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATCCCCAGTCTAA
17314662 GATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAATC
Found at i:17314944 original size:159 final size:158
Alignment explanation
Indices: 17314643--17314980 Score: 396
Period size: 159 Copynumber: 2.1 Consensus size: 158
17314633 TAATCATACA
* *
17314643 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGACAGCAAGCA
* * * * * * **
17314708 GGGTGGATCGAGCCGATCCCCGGCTGGCGCATTCTGCCTCTTCGGTCGGCTGAGCATCCGTACAC
66 GGGTGGACCGACCCGATCCCCGGCTGGCGCATTATGCCTCTTCAGTCGGCTCAGCACCCCCACAC
**
17314773 ACATTTTATGGGTTGGCTTAGGCATAGG
131 ACATTTTATGGGTTAACTTAGGCATAGG
* * * *
17314801 GAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGCAGGA-CTGGCAGCAA
1 GAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTGTGGCAGCAGGATC-GACAGCAA
* **
17314863 GCAGAGG-GGAACCGACCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGTCGGCTCAGTGCCCC
63 GCAG-GGTGG-ACCGACCCGATCCCCGGCTGGCGCATTATGCCTCTTCAGTCGGCTCAGCACCCC
* * * *
17314927 CACGCTCATTTTGTGGGTTAACTTAGGCATATG
126 CACACACATTTTATGGGTTAACTTAGGCATAGG
17314960 GAGTTCATTCCCAGTCTAAGA
1 GAGTTCATTCCCAGTCTAAGA
17314981 TTTGATCTGA
Statistics
Matches: 150, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
157 4 0.03
158 52 0.35
159 91 0.61
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGACAGCAAGCA
GGGTGGACCGACCCGATCCCCGGCTGGCGCATTATGCCTCTTCAGTCGGCTCAGCACCCCCACAC
ACATTTTATGGGTTAACTTAGGCATAGG
Found at i:17315585 original size:158 final size:157
Alignment explanation
Indices: 17315278--17315621 Score: 397
Period size: 158 Copynumber: 2.2 Consensus size: 157
17315268 GGTTAGCTTT
** * * *
17315278 GGCATACGGAGTTCATTCCATGTCTAAGCCCAGCTGGACCGAGGGTCATGGCAGCGGGATCGGCA
1 GGCATACGGAGTTCATTCCATGTCTAAGCCCAAATGGAACGAGGGTCATGGCAGCAGGATCGACA
* * * * *
17315343 GCACGCAGAGGGGGACCGGGTCGATCCCCGGCTGCGCATTATGCCTCTTCGGCTGGCTCGACGCC
66 GCACACAGAGGGGGACCGGGCCGATCCCCGGCTGCACAATATGCCTCTCCGGCTGGCTCGACGCC
*
17315408 CGCACACTCGTTTCGTGGGTTGACTTA
131 CGCACACTCATTTCGTGGGTTGACTTA
* * * * * *
17315435 TGCATACGGAGTTCATTCCCA-GTCTAAGATCGAAATGGAATGAGGGTTATGGTAGCAGGATCGA
1 GGCATACGGAGTTCATT-CCATGTCTAAG-CCCAAATGGAACGAGGGTCATGGCAGCAGGATCGA
* * * *
17315499 CAGCACATAG-GGGGGACTGGGCCGATCCCCGGCTTGCACAATCTGCCTCTCCGGTTGGCT-GAG
64 CAGCACACAGAGGGGGACCGGGCCGATCCCCGGC-TGCACAATATGCCTCTCCGGCTGGCTCGA-
* * * *
17315562 TGCCCGTACGCTCATTTCGTGGGTTGGCTTA
127 CGCCCGCACACTCATTTCGTGGGTTGACTTA
*
17315593 GGCATACTGAGTTCATTCCATGTCTAAGC
1 GGCATACGGAGTTCATTCCATGTCTAAGC
17315622 ATACGGAGTA
Statistics
Matches: 154, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 49 0.32
158 105 0.68
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GGCATACGGAGTTCATTCCATGTCTAAGCCCAAATGGAACGAGGGTCATGGCAGCAGGATCGACA
GCACACAGAGGGGGACCGGGCCGATCCCCGGCTGCACAATATGCCTCTCCGGCTGGCTCGACGCC
CGCACACTCATTTCGTGGGTTGACTTA
Found at i:17316343 original size:26 final size:26
Alignment explanation
Indices: 17316313--17316368 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17316303 TGGGTTGACT
17316313 TAAGCATAAGGAGTTCATTCCCAGTC
1 TAAGCATAAGGAGTTCATTCCCAGTC
*
17316339 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATAAGGAGTTCATTCCCAGTC
17316365 TAAG
1 TAAG
17316369 ATCGGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATAAGGAGTTCATTCCCAGTC
Found at i:17316630 original size:158 final size:159
Alignment explanation
Indices: 17316426--17316844 Score: 472
Period size: 158 Copynumber: 2.6 Consensus size: 159
17316416 GGGGATCGAA
* * * *
17316426 CCGATCCCCGGCTTGTGCATTCTGCCTCTCCAACCGGCTGAGTGCCCGCACGGTCGTTTCATGGG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGG
* * **
17316491 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC-GACCGACGGTTGTGGTAGC
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGACGGTTACGGTAGC
* * * **
17316554 GGGA-CTGGCGGCACGTAGAAGGGGATCT-GG
131 AGGATC-GACAGCACACAGAA-GGGA-CTAGG
* * ** * * * *
17316584 CCGATCCCAGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAATGCCCGCAAGCTCGTTTCGTGGG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGG
* * * * *
17316649 TTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTACGGTAG
66 TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGACGGTTACGGTAG
* *
17316712 CAGGATCGATAGCACACAGGAGGGACTAGG
130 CAGGATCGACAGCACACAGAAGGGACTAGG
* * * *
17316742 CCGGTCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGCTTCGTGGG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGG
17316807 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17316845 TACGGAGTTC
Statistics
Matches: 212, Mismatches: 42, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 8 0.04
158 173 0.82
159 30 0.14
160 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGACGGTTACGGTAGC
AGGATCGACAGCACACAGAAGGGACTAGG
Found at i:17316852 original size:26 final size:26
Alignment explanation
Indices: 17316816--17316868 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17316806 GTTGGCTTAG
17316816 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
17316842 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
17316868 G
1 G
17316869 ATCAAACCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:17316974 original size:184 final size:184
Alignment explanation
Indices: 17316658--17317027 Score: 492
Period size: 184 Copynumber: 2.0 Consensus size: 184
17316648 GTTGACTTAG
* * * * *
17316658 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGCAGCAGGATCAACA
* * *
17316723 GCACACAGGAGGGACTAGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
66 GCACACAGGAGGGACTAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
**
17316788 CGCACGCTCGCTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTAACTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * **
17316842 GCATACGGAGTTCATTCCCATTCTAAGATCAAACCCGACCGAGGGTTGTGGCAGCAGGATCAACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGCAGCAGGATCAACA
* * ** * *
17316907 GCACGCAAGG-GGGA-TCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGATCG
66 GCACAC-AGGAGGGACT-AGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* **
17316970 CCCGCACGCTAATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTGTGTCTAA
129 CCCGCACGCTAACTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17317026 GC
1 GC
17317028 CCCAGCCGGA
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.01
184 156 0.98
185 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGCAGCAGGATCAACA
GCACACAGGAGGGACTAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTAACTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17317212 original size:26 final size:26
Alignment explanation
Indices: 17317183--17317234 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17317173 GTTGATTAGA
17317183 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
17317209 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
17317235 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:17317580 original size:159 final size:158
Alignment explanation
Indices: 17317269--17317688 Score: 375
Period size: 159 Copynumber: 2.7 Consensus size: 158
17317259 CAGCACATAA
* * * * * * ** * *
17317269 GGGGGACTGGGCCGATCCTCAGCTTACGTATTCTACCTCTCCG-GCCGGCTGAGCGCCCGCACGC
1 GGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGAG-AAGCTCAACGCCCGCACGC
* * * * *
17317333 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-ACATGTCTAAGCCCAAGTCGGATCGAG
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCAAGTCGGATCGAG
** * *
17317397 GGTTGTGGTAGTGATACCGGCAGCATGCAG
130 GGTTGTGACAGTGATA-CGACAGCACGCAG
* * * * **
17317427 ATGGGGATCGGGCCAATCCCCAGCTTGCGCATTAC-GGCTCTTCG-GCTGGCTCAACGCCCGCAC
1 -GGGGGACCGGGCCAATCCCCAGCTTGCGCATT-CTGCCTCTCCGAG-AAGCTCAACGCCCGCAC
* * * * ** *
17317490 GCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCGGGTCGGATTG
63 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCAAGTCGGATCG
17317554 AGGGTTGTGACAGCATGAT-CGACAGCACGCAG
128 AGGGTTGTGACAG--TGATACGACAGCACGCAG
** ** * * * *
17317586 GGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGAGAAGCTGAGCGCCTGGACGCT
1 GGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGAGAAGCTCAACGCCCGCACGCT
17317651 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
17317689 GTGCCTAAGC
Statistics
Matches: 209, Mismatches: 46, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 82 0.39
159 119 0.57
160 3 0.01
161 4 0.02
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
GGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGAGAAGCTCAACGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCAAGTCGGATCGAGG
GTTGTGACAGTGATACGACAGCACGCAG
Found at i:17317722 original size:26 final size:26
Alignment explanation
Indices: 17317671--17317723 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17317661 GTTGGCTTAG
* **
17317671 GCATACGGAGTTCATTCCGTGCCTAA
1 GCATACGGAATTCATTCCCAGCCTAA
*
17317697 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGCCTAA
17317723 G
1 G
17317724 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGCCTAA
Found at i:17324641 original size:159 final size:159
Alignment explanation
Indices: 17324342--17324838 Score: 437
Period size: 159 Copynumber: 3.1 Consensus size: 159
17324332 GTAAGCATCT
* * * *
17324342 GGAGTTCATTCCCA-GTCAAAG-ATCAGACCAGACCGAGGGTT-CTGACAGCAGGATCGACAGCA
1 GGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGC-GGCAGCAGGATCGATAGCA
* * * * * ** * * * * *
17324404 CGCA-G-GGGGAGC-GGGCCAAT-CCCTAGCTTGTGTGTTTTGCCTCTCTGACCGGCTGAGCGCC
64 CACAGGAGGGGA-CTGGACCGATCCCCGA-CTTGCG-CATTTGCCTCTCCGGCCGACTCAACGCC
*
17324465 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA-
126 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * *
17324498 GGTAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGAAT-GGTAGCA
1 GG-AGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGG-ATCGATAGCA
* * * *
17324561 CACA-GAGGGGGACCTGG-CCGATCCTCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAATGCC
64 CACAGGA-GGGGA-CTGGACCGATCCCCGACTTGCGCATT-TGCCTCTCCGGCCGACTCAACGCC
* * * *
17324624 CGCACGCTCATTGCGTGGGTTGACTTAGGCTTAC
126 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*** * * *
17324658 GGAGTTCATTCC-TAGTCTAAG-ATTGGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGGAC
1 GGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCAC
* * * * *
17324721 ACAGGAGGGGACTGGATCGATCCCCGGCTTGCGCATTTGCCTCTCCGGCCGACTGAGCACCCGCA
65 ACAGGAGGGGACTGGACCGATCCCCGACTTGCGCATTTGCCTCTCCGGCCGACTCAACGCCCGCA
17324786 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
130 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
17324816 GGAGTTCATTCCATGTCTAAGCA
1 GGAGTTCATTCCATGTCTAAGCA
17324839 TATGGAGTTC
Statistics
Matches: 273, Mismatches: 50, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
156 5 0.02
157 44 0.16
158 82 0.30
159 133 0.49
160 9 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
GGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACA
CAGGAGGGGACTGGACCGATCCCCGACTTGCGCATTTGCCTCTCCGGCCGACTCAACGCCCGCAC
GCTCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:17324834 original size:158 final size:158
Alignment explanation
Indices: 17324439--17324837 Score: 459
Period size: 159 Copynumber: 2.5 Consensus size: 158
17324429 GCTTGTGTGT
* * *
17324439 TTTGCCTCTCTGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGTAG
1 TTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-AG
* * *
17324503 TTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAATGGTAGCACACAGAG
65 TTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCGGCAGCAGGAATGATAGCACACAGAG
*
17324568 GGGGACCTGGCCGATCCTCGACTTGCGCA
130 GGGGACCTGGCCGATCCCCGACTTGCGCA
* * ** * * * *
17324597 TTATGCCTCTCCGGTCGGCTCAATGCCCGCACGCTCATTGCGTGGGTTGACTTAGGCTTACGGAG
1 TT-TGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
**** * * *
17324662 TTCATTCC-TAGTCTAAG-ATTGGACCGGACTGAGGGTTGCGGCAGCAGG-ATCGATAGGACACA
65 TTCATTCCAT-GTCTAAGCCCCAG-CCAGACCGAGGGTTGCGGCAGCAGGAAT-GATAGCACACA
* *
17324724 G-GAGGGGA-CTGGATCGATCCCCGGCTTGCGCA
127 GAG-GGGGACCTGG-CCGATCCCCGACTTGCGCA
* *
17324756 TTTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
1 TTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
17324821 TCATTCCATGTCTAAGC
66 TCATTCCATGTCTAAGC
17324838 ATATGGAGTT
Statistics
Matches: 198, Mismatches: 34, Indels: 17
0.80 0.14 0.07
Matches are distributed among these distances:
158 78 0.39
159 118 0.60
160 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
TTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCGGCAGCAGGAATGATAGCACACAGAGG
GGGACCTGGCCGATCCCCGACTTGCGCA
Found at i:17324846 original size:26 final size:26
Alignment explanation
Indices: 17324810--17324862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17324800 GTTGGCTTAG
17324810 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17324836 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17324862 G
1 G
17324863 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17325200 original size:26 final size:26
Alignment explanation
Indices: 17325163--17325215 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17325153 GTTGACTTAG
17325163 GCATACAAAGTTCATACCCAATCTAA
1 GCATACAAAGTTCATACCCAATCTAA
* * *
17325189 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATACCCAATCTAA
17325215 G
1 G
17325216 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATACCCAATCTAA
Found at i:17326341 original size:159 final size:157
Alignment explanation
Indices: 17325892--17326394 Score: 500
Period size: 159 Copynumber: 3.2 Consensus size: 157
17325882 CCCAGTCTAA
* ** * * *
17325892 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTACGATAGCAGGATC-AGC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAAACA-GACTGAGGGTTGCGACAGCAGGATCGA-C
* * * * *
17325956 AACAC-ACAGGGGGGACCAGACCGATCCTCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
63 AGCACGACAGGGGGGACCAGGCCGATTC-CCAGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC
* *
17326020 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * * **
17326051 GCATAGGGAGTTCATTCCAGTCTAAGCCCCAGCCAGA-TCGAGGGTTGTGGCAGTGGGATCGGA-
1 GCATACGGAGTTCATTCCAGTCTAAG-ATCAAACAGACT-GAGGGTTGCGACAGCAGGATC-GAC
* * * * * * *
17326114 AGCACG-CATAGGGGGACCGGGCCGA-TCCCCGTCTTGCGTATTATGCCTCTTCGGCCAGCTCAG
63 AGCACGACA-GGGGGGACCAGGCCGATTCCCAG-CTTGCGCATTCTGCCTCTTCGGCCGGCTGAG
* * * *
17326177 TGCCCGCACACTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
17326209 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAAAC-AGACTGAGGGTTGCGACAGCAGGATCGACA
*
17326274 GCACGA-AGGGGGGAACCAGGCCGATTCCCAGCTTGCGCATTCTGCCTC-TCTGACCGGCTGAGC
64 GCACGACAGGGGGG-ACCAGGCCGATTCCCAGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGAGC
* *
17326337 GCCCGGACGCTCGTTTCGTAGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
17326368 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
17326395 CATATGGAGT
Statistics
Matches: 275, Mismatches: 53, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
157 3 0.01
158 116 0.42
159 149 0.54
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAAACAGACTGAGGGTTGCGACAGCAGGATCGACAGC
ACGACAGGGGGGACCAGGCCGATTCCCAGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17327505 original size:161 final size:159
Alignment explanation
Indices: 17327116--17327550 Score: 400
Period size: 161 Copynumber: 2.7 Consensus size: 159
17327106 CCCAGTCTAA
* * * * *
17327116 GCATACGAAGTTCATTCCTAGTCTAAGATCGGA-CAGGATCGAGGGTTGCGACAGCAAGATCGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * ** *
17327180 AGCATGTAG-GGGGGATCGAGCCGATCCTCGGA-TTGTTCATTCTGCCTCTCCGGTCAGCTGAGC
65 AGCACGCAGAGGGGGATCGGGCCGATCC-CTGACTTGCGCATTCTGCCTCTCCGGTCAGCTCAGC
** **
17327243 ACCCGCACGCCCATTTTGTGGGTTGGCTTAG
129 ACCCGCACGCCCATTTCATGGGTTGAATTAG
* * * * ** * * *
17327274 GCGTAGGGAGTTCATT-CCATGTTTAAGCCCTAG-CCGGACTGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGCGGCAGCAGGATC-G
* * * * *
17327336 ACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCTTCGGTCGGCTCAG
63 ATAGCACGCAGAGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCAGCTCAG
* * *
17327401 CGCGACCGTACGCTCATTTCATGGGTTGAATTAG
128 CAC--CCGCACGCCCATTTCATGGGTTGAATTAG
* *
17327435 GCATACGAAATTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGTTGCGGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
* * *
17327500 GCACGCAGA-GGGGATCGGGTCGAT-CCTCGGCTTACGCATTCTGCCTCTCCG
66 GCACGCAGAGGGGGATCGGGCCGATCCCT-GACTTGCGCATTCTGCCTCTCCG
17327551 ACTGGCTGAG
Statistics
Matches: 214, Mismatches: 51, Indels: 22
0.75 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 50 0.23
159 47 0.22
160 34 0.16
161 76 0.36
162 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGAGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCAGCTCAGCAC
CCGCACGCCCATTTCATGGGTTGAATTAG
Found at i:17327629 original size:26 final size:26
Alignment explanation
Indices: 17327593--17327645 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17327583 GTTGGCTTAG
*
17327593 GCATACGGAGTTGATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17327619 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17327645 G
1 G
17327646 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17327996 original size:26 final size:26
Alignment explanation
Indices: 17327960--17328012 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17327950 GTTGGCTTAG
17327960 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17327986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17328012 G
1 G
17328013 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17328716 original size:26 final size:26
Alignment explanation
Indices: 17328680--17328732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17328670 GTTGACTTAG
17328680 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17328706 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17328732 G
1 G
17328733 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17329181 original size:158 final size:155
Alignment explanation
Indices: 17328706--17329524 Score: 757
Period size: 158 Copynumber: 5.2 Consensus size: 155
17328696 CCCAGTCTAA
*
17328706 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-GACCGGATCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
17328770 AGCACGCAGGGGGGACCGGGTTGATCCCTGGCTTGCGCATTCTGTCTCTCCGGCTGACTTAGCAC
64 AGCACGCAGGGGGGACC-GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAGCGC
17328835 CCGCACGGC-CGTTTCGTGGGTTGGCTTAG
128 CCGCAC-GCTCGTTTCGTGGGTT-GCTTAG
* ** * * ** *
17328864 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGTGGGATCAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGA-CCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* ** * * **
17328929 GCACGTAGAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTAAGCCTCTCCGGCTGGCTCAGCGC
65 GCACGCAG-GGGGGACCGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAGCGC
*
17328994 CCGCACGCTCGTTCCGTGGGTTGACTTAG
128 CCGCACGCTCGTTTCGTGGGTTG-CTTAG
* * * * * *** *
17329023 GCATACGGAGTTCATTCCCA-GTCTAAGGTCGGACCGAACCTAGGGATGCAATAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-GACCGGATCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
17329087 AGCACGCAGGGGGGACCGGCCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGC
64 AGCACGCAGGGGGGACCGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAGCGC
* *
17329152 CCGCACGAC-CGTTTCGTGCGTTAGTTTAG
128 CCGCACG-CTCGTTTCGTGGGTT-GCTTAG
* * * * * * * * * * *
17329181 GCATAGGGAGTTCAGTCTATGTCTAAGCCTCTATCGGACCTAGGGTTGTGGCAGCGGGATAGGCA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
17329246 GCACGCAGATGGGGACGGTGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTAGCTCAGCGC
65 GCACGCAG-GGGGGACCG-GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAGCGC
* * *
17329311 CTGCACGCTCATTTCATGGGTTGACTTAG
128 CCGCACGCTCGTTTCGTGGGTTG-CTTAG
* * ** *
17329340 GCATACGAAGTTCATTCCCA-GTCTAAGATCGAACGAGATCGAGGGTCACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGACCG-GATCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * *
17329404 CGCACGCAGGGGGGATCGGGTCGGTCCCCGACTTGCGTATTCTGCCTCTTCGGCTGGCTGAGCGC
64 AGCACGCAGGGGGGACCGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAGCGC
*
17329469 CCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTT-GCTTAG
17329498 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17329525 CATACGAAGT
Statistics
Matches: 527, Mismatches: 112, Indels: 44
0.77 0.16 0.06
Matches are distributed among these distances:
157 10 0.02
158 278 0.53
159 232 0.44
160 7 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGGGGGGACCGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAGCGCCCG
CACGCTCGTTTCGTGGGTTGCTTAG
Found at i:17329282 original size:317 final size:313
Alignment explanation
Indices: 17328706--17329525 Score: 993
Period size: 317 Copynumber: 2.6 Consensus size: 313
17328696 CCCAGTCTAA
* * *
17328706 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGAATCGAGGG-TGCAGCAGCAGGATCGGCA
* * * * * * *
17328771 GCACGCAGGGGGGACCGGGTTGATCCCTGGCTTGCGCATTCTGTCTCTCCGGCTGACTTAGCACC
64 GCACGCAGGGGGGACC-GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCC
17328836 CGCACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
128 CGCAC-GCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * * * *
17328901 ATCGAGGGTTGTGGCAGTGGGATCAGCAGCACGTAGAGGGGGATTGGGTCGATCCTCGGCTTGCG
192 ACCGAGGGTTGTGGCAGCGGGATCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCG
* * *
17328966 CATTAAGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAG
257 CATTAAGCCTCTCCGGCTAGCTCAGCGCCCGCACGCTCATTCCATGGGTTGACTTAG
* * * ** *
17329023 GCATACGGAGTTCATTCCCAGTCTAAGGTCGGACCGAACCTAGGGATGCAATAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGAATCGAGGG-TGCAGCAGCAGGATCGGCA
* *
17329088 GCACGCAGGGGGGACCGGCCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCC
64 GCACGCAGGGGGGACCGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCC
* * * * * * *
17329153 CGCACGACCGTTTCGTGCGTTAGTTTAGGCATAGGGAGTTCAGTCTATGTCTAAGCCTCTA-TCG
128 CGCACG-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC-CCAGCCG
* *
17329217 GACCTAGGGTTGTGGCAGCGGGAT-AGGCAGCACGCAGATGGGGA-CGGTGCCGATCCCCAGCTT
191 GACCGAGGGTTGTGGCAGCGGGATCA-GCAGCACGCAGAGGGGGATCGG-GCCGATCCCCAGCTT
* * *
17329280 GCGCATTATGCCTCTCCGGCTAGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAG
254 GCGCATTAAGCCTCTCCGGCTAGCTCAGCGCCCGCACGCTCATTCCATGGGTTGACTTAG
* * *
17329340 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACGAGATCGAGGGT-CACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGA-ATCGAGGGTGCA--GCAGCAGGATCGGC
* * * * * *
17329404 CGCACGCAGGGGGGATCGGGTCGGTCCCCGACTTGCGTATTCTGCCTCT-TCGGCTGGCTGAGCG
63 AGCACGCAGGGGGGACCGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCT-GGCTGGCTGAGCG
* *
17329468 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
126 CCCGCACGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17329526 ATACGAAGTT
Statistics
Matches: 426, Mismatches: 66, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
315 2 0.00
316 15 0.04
317 407 0.96
318 2 0.00
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (313 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGAATCGAGGGTGCAGCAGCAGGATCGGCAGC
ACGCAGGGGGGACCGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGC
ACGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG
AGGGTTGTGGCAGCGGGATCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATT
AAGCCTCTCCGGCTAGCTCAGCGCCCGCACGCTCATTCCATGGGTTGACTTAG
Found at i:17329528 original size:26 final size:26
Alignment explanation
Indices: 17329498--17329550 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17329488 GTTGGCTTAG
*
17329498 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17329524 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17329550 G
1 G
17329551 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17329704 original size:185 final size:184
Alignment explanation
Indices: 17329340--17329710 Score: 494
Period size: 185 Copynumber: 2.0 Consensus size: 184
17329330 GTTGACTTAG
* * *
17329340 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACGAGATCGAGGGTCACGGCAGCAGGATCGACC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACGAGATCGAGGGTCACGACAGCAGGACCGACA
* * * * * * * * * *
17329405 GCACGCAGGGGGGATCGGGTCGGTCCCCGACTTGCGTATTCTGCCTCTTCGGCTGGCTGAGCGCC
66 GCACGCAGGGGAGACCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGCGCC
* *
17329470 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAGTCCATGTCTAA
* **
17329524 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCG-GATCGAGGGTTGCGACAGCAGGACC-AG
1 GCATACGAAGTTCATTCCCAGTCTAAGATC-GAACGAGATCGAGGGTCACGACAGCAGGACCGA-
* *
17329587 CAGCACGTATGGGGAGACCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGT
64 CAGCACGCA-GGGGAGACCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGC
* * *
17329652 GCCCGCTCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAA
128 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAGTCCATGTCTAA
17329709 GC
1 GC
17329711 CCCTGTCGGA
Statistics
Matches: 161, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
183 1 0.01
184 58 0.36
185 102 0.63
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGAACGAGATCGAGGGTCACGACAGCAGGACCGACA
GCACGCAGGGGAGACCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGCGCC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAGTCCATGTCTAA
Found at i:17329895 original size:159 final size:158
Alignment explanation
Indices: 17329524--17330026 Score: 469
Period size: 159 Copynumber: 3.2 Consensus size: 158
17329514 CCATGTCTAA
* * * * *
17329524 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGACCAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGGACCGAGGGTTGCGGCAGCAGGACCAGA
* * * * *
17329588 AGCACGTATG-GGGAGACCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGT
64 AGCACGCA-GAGGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGC
* * *
17329652 GCCCGCTCGCCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * * *
17329683 GCATAGGGAGTTCAGTCCATGTCTAAGCCCCTGTCGGACCTAGGGTTGTGGCAGCGGGA-CAGGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACGGACCGAGGGTTGCGGCAGCAGGACCA-GA
* * * * * * * *
17329747 AGCACGCAGAGGGGGACAGTGCCGATCCCTGGCTTACGCATTATGCCTCTCCAACTGGCTCAGCG
64 AGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
17329812 CCCGCACGCTTGTTTCATGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * *
17329842 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTCACGGCAGTAGGATC-GA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAC-GGACCGAGGGTTGCGGCAGCAGGACCAGA
* * * * * * *
17329905 CAGCACGCAGA-GGGGACCGGGTGGGTCCCCGGCTTGCGCATTCTGCCTTTTCGGCCGGCTGAGC
64 -AGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGC
* * *
17329969 GACCGCACGCTCGTTTCGTGGGTTGCCTTAA
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
17330000 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17330027 CATACGAAGT
Statistics
Matches: 271, Mismatches: 64, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 98 0.36
159 164 0.61
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGGACCGAGGGTTGCGGCAGCAGGACCAGAAG
CACGCAGAGGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17330052 original size:26 final size:26
Alignment explanation
Indices: 17329996--17330052 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
17329986 GTGGGTTGCC
*
17329996 TTAAGCATACGGAGTTCATTCCATGT
1 TTAAGCATACGAAGTTCATTCCATGT
*
17330022 CTAAGCATACGAAGTTCATTCCCA-GT
1 TTAAGCATACGAAGTTCATT-CCATGT
17330048 TTAAG
1 TTAAG
17330053 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
TTAAGCATACGAAGTTCATTCCATGT
Found at i:17330055 original size:502 final size:498
Alignment explanation
Indices: 17329023--17330577 Score: 2060
Period size: 502 Copynumber: 3.1 Consensus size: 498
17329013 GTTGACTTAG
* * * * * * *
17329023 GCATACGGAGTTCATTCCCAGTCTAAGGTCGGACCGAACCTAGGGATGCAATAGCAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATC-GCA
* * * * *
17329088 GCACGCAGGGGGGACCG-GCCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGC
65 GCACGTATGGGGGACCGAGCC-GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGC
* * * * *
17329152 CCGCACGACCGTTTCGTGCGTTAGTTTAGGCATAGGGAGTTCAGTCTATGTCTAAGCCTCTATCG
129 CCGCACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCTATCG
* * * * **
17329217 GACCTAGGGTTGTGGCAGCGGGATAGGCAGCACGCAGATGGGGACGGTGCCGATCCCCAGCTTGC
194 GACCTAGGGTTGTGGCAGCGGGACAGGAAGCACGCAGAGGGGGACAGTGCCGATCCCTGGCTTGC
* *
17329282 GCATTATGCCTCTCCGGCTAGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACG
259 GCATTATGCCTCTCCAGCTAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
*
17329347 AAGTTCATTCCCAGTCTAAGATCGAAC-GAGATCGAGGGTCACGGCAGCAGGATCGACCGCACGC
324 -AGTTCATTCCCAGTCTAAGATCG-ACTG-GATCGAGGGTCACGGCAGCAGGATCGACAGCACGC
* * * * *
17329411 AGGGGGGATCGGGTCGGTCCCCGACTTGCGTATTCTGCCTCTTCGGCTGGCTGAGCGCCCGCACG
386 AGAGGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACG
*
17329476 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
451 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
17329524 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGACCAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATC-GCA
* * *
17329589 GCACGTATGGGGAGACCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGTGC
65 GCACGTATGGGG-GACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGC
* * *
17329654 CCGCTCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCTGTCG
129 CCGCACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCTATCG
*
17329719 GACCTAGGGTTGTGGCAGCGGGACAGGAAGCACGCAGAGGGGGACAGTGCCGATCCCTGGCTTAC
194 GACCTAGGGTTGTGGCAGCGGGACAGGAAGCACGCAGAGGGGGACAGTGCCGATCCCTGGCTTGC
* * **
17329784 GCATTATGCCTCTCCAACTGGCTCAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACA
259 GCATTATGCCTCTCCAGCTAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC-
* *
17329849 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTCACGGCAGTAGGATCGACAGCACGCA
323 GAGTTCATTCCCAGTCTAAGATC-GACTGGATCGAGGGTCACGGCAGCAGGATCGACAGCACGCA
* * *
17329914 GAGGGGACCGGGTGGGTCCCCGGCTTGCGCATTCTGCCTTTTCGGCCGGCTGAGCGACCGCACGC
387 GAGGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGC
* *
17329979 TCGTTTCGTGGGTTGCCTTAAGCATACGGAGTTCATTCCATGTCTAA
452 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
17330026 GCATACGAAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGTAACAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATCG-CA
* * * *
17330091 GCACGTATTGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCGGACTGGCTGAGCGC
65 GCACGTA-TGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGC
* * ** * * * *
17330156 CTGCACGTCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
129 CCGCACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCTATCG
* * * * * * * *
17330221 GACCGAGGGTGGTGGCAGCAGGACCGGTAGCACGCAGAGGGGGACCGGGCTGAT-CCTCGGCTTG
194 GACCTAGGGTTGTGGCAGCGGGACAGGAAGCACGCAGAGGGGGACAGTGCCGATCCCT-GGCTTG
* * * * * *
17330285 CGCATTATGCCTCT-CTGGTCAGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTCGGCATA
258 CGCATTATGCCTCTCCAGCT-AGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
* * * *
17330349 CGGAGTTCATTTCCAGTCTAAGATCGGA-TCGGGTCGAGGGTTACGGTAGCAGGATCGACAGCAC
322 C-GAGTTCATTCCCAGTCTAAGATC-GACT-GGATCGAGGGTCACGGCAGCAGGATCGACAGCAC
* ** * *
17330413 ACA-AGGGGGACCAAGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
384 GCAGA-GGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGC
*
17330477 ACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
448 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
17330528 GCATACGAAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTGCG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
17330578 GCAGTAAGAC
Statistics
Matches: 924, Mismatches: 119, Indels: 21
0.87 0.11 0.02
Matches are distributed among these distances:
501 72 0.08
502 842 0.91
503 10 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (498 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGCAG
CACGTATGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
GCACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCTATCGGA
CCTAGGGTTGTGGCAGCGGGACAGGAAGCACGCAGAGGGGGACAGTGCCGATCCCTGGCTTGCGC
ATTATGCCTCTCCAGCTAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAG
TTCATTCCCAGTCTAAGATCGACTGGATCGAGGGTCACGGCAGCAGGATCGACAGCACGCAGAGG
GGACCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17330199 original size:185 final size:184
Alignment explanation
Indices: 17329842--17330212 Score: 464
Period size: 185 Copynumber: 2.0 Consensus size: 184
17329832 GTTGACTTAG
** **
17329842 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTCACGGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCACGGCAACAGGATCGACA
* ** * * * *
17329907 GCACGCAGAGGGGACCGGGTGGGTCCCCGGCTTGCGCATTCTGCCTTTTCGGCCGGCTGAGCGAC
66 GCACGCAGAGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTTCTCGGCCGGCTGAGCGAC
*
17329972 CGCACGCTCGTTTCGTGGGTTGCCTTAAGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCATTTCGTGGGTTGCCTTAAGCATACGGAGTTCATTCCATGTCTAA
* ** *
17330026 GCATAC-GAAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGTAACAGGATCGAC
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCACGGCAACAGGATCGAC
* *
17330090 AGCACGTATTG-GGGGACCGAGCCGATCCCCGACTTGCGCATTCTACC-TCTCGGACTGGCTGAG
65 AGCACGCA--GAGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTTCTCGG-CCGGCTGAG
* * *
17330153 CG-CCTGCACG-TCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
127 CGACC-GCACGCTC-ATTTCGTGGGTTGCCTTAAGCATACGGAGTTCATTCCATGTCTAA
17330211 GC
1 GC
17330213 CCCAACCAGA
Statistics
Matches: 160, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
183 1 0.01
184 70 0.44
185 88 0.55
186 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCACGGCAACAGGATCGACA
GCACGCAGAGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTTCTCGGCCGGCTGAGCGAC
CGCACGCTCATTTCGTGGGTTGCCTTAAGCATACGGAGTTCATTCCATGTCTAA
Found at i:17330505 original size:158 final size:157
Alignment explanation
Indices: 17330026--17330528 Score: 505
Period size: 159 Copynumber: 3.2 Consensus size: 157
17330016 CCATGTCTAA
* * *
17330026 GCATACGAAGTTCATTCCCA-GTTTAAGATCAGACCAGACCGAGGGTTGCGGTAACAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* ** * * *
17330090 AGCACGTATTGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCT-CGGACTGGCTGAGC
65 AGCACGCAGAGGGGGACC-AGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGC
*
17330154 GCCTGCACG-TCTATTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCT-TTT-GTGGGTTGGCTTAG
* ** * * * * **
17330185 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGTGGTGGCAGCAGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * *
17330249 AGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCTGGTCAGCTCAACG
65 AGCACGCAGAGGGGGACC-AGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * * *
17330314 CCCGAACGCTCATTTCGTGGGTTGACTTCG
129 CCCGCACGCTC-TTTTGTGGGTTGGCTTAG
* * * ** *
17330344 GCATACGGAGTTCATTTCCA-GTCTAAGATCGGATCGGGTCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
17330408 AGCACACA-AGGGGGACCAAGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
65 AGCACGCAGAGGGGGACC-AGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
17330472 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
129 CCCGCACGCTC-TTTTGTGGGTTGGCTTAG
17330502 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17330529 CATACGAAGT
Statistics
Matches: 273, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 95 0.35
159 158 0.58
160 14 0.05
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGAGGGGGACCAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCTTTTGTGGGTTGGCTTAG
Found at i:17331310 original size:341 final size:340
Alignment explanation
Indices: 17330671--17331402 Score: 912
Period size: 341 Copynumber: 2.1 Consensus size: 340
17330661 CTCTTCGACC
*
17330671 GACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGCCATACGGAGTGCATCCCCAATCTAA
1 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCCATACGGAGTGCATCCCCAATCTAA
* * *
17330736 GCATACGGAGTTCATTCCAGTCTAAGATCTAATTGGACCGAGGGTTGCGGCAGCAGGATCGACAG
66 GCATACGGAGTTCATTCCAGTCTAAGATCTAACTGGACCGAGGGTTACGGCAGCAGGATCGACAA
* * * * ** * *
17330801 CACACAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCG
131 CACACAGAGGGACCGGGACGATCCCAGACTTACGCATTCTGCCTCTCCGACCGACTGAACGCCCG
*
17330866 CACGCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
196 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
* * * *
17330931 CGAGGGTTGTGGTAGTGGGACCGGCAGCACACAGAGGGGGACTAAGCGATCCCCGTGTTGCGCAT
261 CGAGGGATGTGGCAGTGGAACCGACAGCACACAGAGGGGGACTAAGCGATCCCCGTGTTGCGCAT
17330996 TCTGCCTCTCCAGTT
326 TCTGCCTCTCCAGTT
* ** * * * *
17331011 GACTGAGCGCCTGTGCGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAA
1 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCCATACGGAGTGCATCCCCAATCTAA
** * *
17331075 GCATGTGGAGTTCATTCCCAGTCTAAGATC-AGACTGGACTGAGGGTTACGGCAGCAGGATCGGC
66 GCATACGGAGTTCATT-CCAGTCTAAGATCTA-ACTGGACCGAGGGTTACGGCAGCAGGATCGAC
* * * *
17331139 AACACACAGAAGGGATCGGGATGATCCCTAG-CTTGCGCATTCTGCCTCTCCGACCGACTGAATG
129 AACACACAG-AGGGACCGGGACGATCCC-AGACTTACGCATTCTGCCTCTCCGACCGACTGAACG
* *
17331203 CCCTCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
192 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* ** ** * **
17331268 AGACCGAGGGATGTGGCAGTGGAACCGACAGTACGTAGAGGGGGACCGAGCCGATCCTCGACTTG
257 AGACCGAGGGATGTGGCAGTGGAACCGACAGCACACAGAGGGGGACTAAG-CGATCCCCGTGTTG
* * * * * *
17331333 TGCATTATGCCTTTTCGGTC
321 CGCATTCTGCCTCTCCAGTT
* * * * * *
17331353 GGCTCAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
1 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCCATACGGAGT
17331403 TTATTCCATG
Statistics
Matches: 330, Mismatches: 57, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
339 24 0.07
340 96 0.29
341 143 0.43
342 67 0.20
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (340 bp):
GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCCATACGGAGTGCATCCCCAATCTAA
GCATACGGAGTTCATTCCAGTCTAAGATCTAACTGGACCGAGGGTTACGGCAGCAGGATCGACAA
CACACAGAGGGACCGGGACGATCCCAGACTTACGCATTCTGCCTCTCCGACCGACTGAACGCCCG
CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
CGAGGGATGTGGCAGTGGAACCGACAGCACACAGAGGGGGACTAAGCGATCCCCGTGTTGCGCAT
TCTGCCTCTCCAGTT
Found at i:17331515 original size:159 final size:159
Alignment explanation
Indices: 17331161--17331568 Score: 480
Period size: 159 Copynumber: 2.6 Consensus size: 159
17331151 GGATCGGGAT
* * * ** * *
17331161 GATCCCT-AGCTTGCGCATTCTGCCTCTCCGACCGACTGAATGCCCTCACGCTCGTTTCATGGGT
1 GATCCCTGA-CTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCATGGGT
* *
17331225 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGATGTGGCAGTGG
65 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGCAGCGG
**
17331290 AACCGACAGTACGTAGAGGGGGACCGAGCC
130 AACCGACAACACGTAGAGGGGGACCGAGCC
* * * **
17331320 GAT-CCTCGACTTGTGCATTATGCCTTTTCGGTCGGCTCAGCGCCCGCACGCCCGTTTCATGGGT
1 GATCCCT-GACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCATGGGT
* * *
17331384 TGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGGCCCAGCCAGACCGAGGGTTGTGGCAGCGG
65 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGCAGCGG
* * *
17331449 GACCGGCAACACGTAGAGGGGGACCGGGCC
130 AACCGACAACACGTAGAGGGGGACCGAGCC
** * * * *
17331479 GATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTTC-GCGCCCAAATGCTCGTTTCGTGCGT
1 GATCCCTGACTTGCGCATTATGCCTCTCCGACCGGC-TCAGCGCCCGCACGCCCGTTTCATGGGT
* * * *
17331543 TGACTTCGGTATACGGAGTTCATTCC
65 TGGCTTAGGCATAGGGAGTTCATTCC
17331569 CAGTTTAAGA
Statistics
Matches: 207, Mismatches: 38, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
158 3 0.01
159 198 0.96
160 6 0.03
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
GATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGCAGCGGA
ACCGACAACACGTAGAGGGGGACCGAGCC
Found at i:17331944 original size:26 final size:26
Alignment explanation
Indices: 17331907--17331959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17331897 GTTGACTTAG
17331907 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17331933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17331959 G
1 G
17331960 ATCTAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17332268 original size:26 final size:26
Alignment explanation
Indices: 17332238--17332316 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
17332228 GTTGACTTAG
*
17332238 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
17332264 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
17332290 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
17332316 G
1 G
17332317 ATCGAACTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:17332594 original size:159 final size:157
Alignment explanation
Indices: 17332384--17332795 Score: 398
Period size: 160 Copynumber: 2.6 Consensus size: 157
17332374 CCGGTCCCCA
* * * ** *
17332384 GCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGGACGCTCGTTTCGTGGGTTGGCTTAGA
1 GCTTGCACATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG-
* * * * ** * * *
17332449 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TGAAATCGAGGGTTGTGGTAGTGGGACCGGCA
65 CATACGGAGTTCATTCCA-GTCTAAGCACCAGCTG-AACCGAAGGTTACGGCAGTAGGACCGACA
* * *
17332513 GCACACAGAGGGGGAGCGGGCCGATC-CCTG
128 GAACACAGAGGGGGACCGGGCCAATCTCC-G
* * * **
17332543 GCTTGCACATTATGCCTCTTCGGTCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTCACTTATG
1 GCTTGCACATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA-G
* * * *
17332608 CATACAGAGTTCAATCCCAGTCTAAG-ATCAGACCTGAACCGAAGGTTACGGCAGTAGGATCGAC
65 CATACGGAGTTC-ATTCCAGTCTAAGCACCAG--CTGAACCGAAGGTTACGGCAGTAGGACCGAC
* * *
17332672 TGAACACAGGGGGGGACCGGGTCAATCTCCG
127 AGAACACAGAGGGGGACCGGGCCAATCTCCG
* * * * *
17332703 GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGCCCGCAGGCTCATTTCGTGGGTTGGCTTAGG
1 GCTTGCACATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA-G
17332768 CATACGGAGTTCATTCCACGTCTAAGCA
65 CATACGGAGTTCATTCCA-GTCTAAGCA
17332796 TACGGAGTTC
Statistics
Matches: 202, Mismatches: 43, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
158 3 0.01
159 74 0.37
160 120 0.59
161 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCTTGCACATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGC
ATACGGAGTTCATTCCAGTCTAAGCACCAGCTGAACCGAAGGTTACGGCAGTAGGACCGACAGAA
CACAGAGGGGGACCGGGCCAATCTCCG
Found at i:17332803 original size:26 final size:26
Alignment explanation
Indices: 17332767--17332819 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17332757 GTTGGCTTAG
17332767 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17332793 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17332819 G
1 G
17332820 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17333833 original size:159 final size:157
Alignment explanation
Indices: 17333556--17334177 Score: 672
Period size: 159 Copynumber: 3.9 Consensus size: 157
17333546 GGACCGGATT
* * * * * * * *
17333556 GAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGGGGGGACCGGGCCGATCCCAGACTTGCGTACT
1 GAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATT
* * * * * ** *
17333621 CTGCCTCTCCGACCGGCTGCA-CGCCCGTACACCCATTTCGTTGGTTGGTTTAGGCATAGGGAGT
66 ATGCCTCTCCGACCGGCT-CAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
17333685 TCATTCCATGTCTAAGCCCCAGTCGAACC
130 TCATTCCATGTCTAAGCCCCAG-CGAACC
* * * *
17333714 AAGGGCTGTGGTAGCGGGATCGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCAT
1 GAGGGTTGTGGTAGCAGGATCGGCAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCAT
* * * * *
17333779 TATGCCTCTCCGACCAGCTCAGCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAGGGAGT
65 TATGCCTCTCCGACCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
17333844 TCATTCCATGTCTAAGCCCCAGCCAGACC
130 TCATTCCATGTCTAAGCCCCAGCGA-ACC
* * * *
17333873 GAGGGTTGTGGTAGCAGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGCACAT
1 GAGGGTTGTGGTAGCAGGATCGGCAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCAT
* *
17333938 TATGCCTCTCCGGCCGGCTCAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
65 TATGCCTCTCCGACCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * ** * *
17334003 TCATTCC-TAATCTAAGATCGGACCGGACC
130 TCATTCCAT-GTCTAAG-CCCCAGCGAACC
* * * * * * * *
17334032 GAGGGTTGCGGCAGCAAGATCGACAGCACGTAGGGGGGACCGAGCCGGTCCCCAGCTTACGCATT
1 GAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATT
* * * ** ** * *
17334097 CTGCCTCTTCGATCGATTGGGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
66 ATGCCTCTCCGACCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
17334162 CATTCCATGTCTAAGC
131 CATTCCATGTCTAAGC
17334178 ATACGGAGTT
Statistics
Matches: 387, Mismatches: 71, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
158 124 0.32
159 260 0.67
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (157 bp):
GAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATT
ATGCCTCTCCGACCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCGAACC
Found at i:17334104 original size:317 final size:317
Alignment explanation
Indices: 17333556--17334177 Score: 716
Period size: 317 Copynumber: 2.0 Consensus size: 317
17333546 GGACCGGATT
* * **
17333556 GAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGGGGGGACCGGGCCGATCCCAGACTTGCGTACT
1 GAGGGTTGCGGCAGCAGGACCAGCAGCACGCAGGAGGGACCGGGCCGATCCCAGACTTGCACACT
* * * ** *
17333621 CTGCCTCTCCGACCGGCTGCACGCCCGTACACCCATTTCGTTGGTTGGTTTAGGCATAGGGAGTT
66 ATGCCTCTCCGACCGGCTGCACGCCCATACACCCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * ** *
17333686 CATTCCATGTCTAAGCCCCAGTCGAACCAAGGGCTGTGGTAGCGGGATCGGCAGCACGCAGAGGG
131 CATTCCATATCTAAGCCCCAGCCGAACCAAGGGCTGCGGCAGCAAGATCGACAGCACGCAGAGGG
* * *
17333751 GGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC-AGCTCAGCG-CTCGCACGCTC
196 GGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGA-CTCAGCGCCT-GCACGCTC
* *
17333814 GTTTTGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
259 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
* * * * * *
17333873 GAGGGTTGTGGTAGCAGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGCACAT
1 GAGGGTTGCGGCAGCAGGACCAGCAGCACGCAG-GAGGGACCGGGCCGATCCCAGACTTGCACAC
* * * *
17333938 TATGCCTCTCCGGCCGGCT-CAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
65 TATGCCTCTCCGACCGGCTGCA-CGCCCATACACCCATTTCGTGGGTTGACTTAGGCATACGGAG
** * * * * *
17334002 TTCATTCC-TAATCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGTAG
129 TTCATTCCAT-ATCTAAGCCCCAG-CCGAACCAAGGGCTGCGGCAGCAAGATCGACAGCACGCAG
* * * * * ** *
17334065 -GGGGGACCGAGCCGGTCCCCAGCTTACGCATTCTGCCTCTTCGATCGATTGGGCGCCTGTACGC
192 AGGGGGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTCAGCGCCTGCACGC
*
17334129 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
257 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17334178 ATACGGAGTT
Statistics
Matches: 251, Mismatches: 48, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
317 128 0.51
318 123 0.49
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (317 bp):
GAGGGTTGCGGCAGCAGGACCAGCAGCACGCAGGAGGGACCGGGCCGATCCCAGACTTGCACACT
ATGCCTCTCCGACCGGCTGCACGCCCATACACCCATTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCATATCTAAGCCCCAGCCGAACCAAGGGCTGCGGCAGCAAGATCGACAGCACGCAGAGGG
GGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTCAGCGCCTGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
Found at i:17334179 original size:26 final size:26
Alignment explanation
Indices: 17334150--17334202 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17334140 GTTGGCTTAG
17334150 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17334176 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17334202 G
1 G
17334203 ATTTGAGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17334287 original size:11 final size:11
Alignment explanation
Indices: 17334271--17334296 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17334261 CTTGGGGCAC
17334271 CATCGTCGGAG
1 CATCGTCGGAG
17334282 CATCGTCGGAG
1 CATCGTCGGAG
17334293 CATC
1 CATC
17334297 ACCGAAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:17334915 original size:26 final size:26
Alignment explanation
Indices: 17334879--17334931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17334869 GTTGACTTAG
17334879 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17334905 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17334931 G
1 G
17334932 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17335380 original size:26 final size:26
Alignment explanation
Indices: 17335350--17335402 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17335340 GTTGGCTTAG
17335350 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17335376 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17335402 G
1 G
17335403 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17335766 original size:26 final size:26
Alignment explanation
Indices: 17335730--17335782 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17335720 TTTGACTTAG
17335730 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17335756 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17335782 G
1 G
17335783 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17336059 original size:158 final size:158
Alignment explanation
Indices: 17335859--17336402 Score: 449
Period size: 158 Copynumber: 3.4 Consensus size: 158
17335849 CGACTAAGCA
**
17335859 CCCGCACGC-C-TGTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CTATGTCTAAGCCCCAG
1 CCCGCACGCTCAT-TTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTATGTCTAAGCCCCAG
* * * *
17335921 TCAGACTGAGGGTTGTGGCAGCGGGACCGA-AGCACGCAGAGGGGGACCGGGCCGATCCCCAGCT
65 -CGGACAGAGGGTTGTGGTAGCAGGACCGACA-CACGCAGAGGGGGACCGGGCCGATCCCCAGCT
* * *
17335985 TGCATATTATGCCTCTTCGGTCGGCTCAATG
128 TGCACATTATGCCTCTCCGGCCGGCTCAATG
* * * * * **
17336016 CCCGCACGCTCATTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-CTCTAAG-ATCAGA
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTATGTCTAAGCCCCAG-
* * * * * *
17336079 CCGGACCGAGGGTTGTGGTAGCAGGATCGACACACGCAGGGGGGGATCGGGTCGATCCCCGGCTT
65 -CGGACAGAGGGTTGTGGTAGCAGGACCGACACACGCAGAGGGGGACCGGGCCGATCCCCAGCTT
* * * *
17336144 GCGCATTCTGCCTCTCCGGCCGGCTGAGTG
129 GCACATTATGCCTCTCCGGCCGGCTCAATG
* * * *
17336174 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCT-TGTCTAAGCCCTAGC
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTATGTCTAAGCCCCAGC
* *
17336238 TGGACAGAGGGTTGTGGTAGCAGGACCGGCACTGGGATCGGCAGCATGCAGAGGGGGACCAGGCT
66 -GGACAGAGGGTTGTGGTAGCAGGACC-G-AC----A----CA-C--GCAGAGGGGGACCGGGCC
* ** * * * **
17336303 GATTCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCG
117 GATCCCCAGCTTGCACATTATGCCTCTCCGGCCGGCTCAATG
* * * *
17336345 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCGTA-GTCTAAGC
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC-TATGTCTAAGC
17336403 ATACGGAGTT
Statistics
Matches: 311, Mismatches: 53, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
157 13 0.04
158 183 0.59
159 7 0.02
160 2 0.01
164 1 0.00
168 2 0.01
169 1 0.00
170 3 0.01
171 99 0.32
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTATGTCTAAGCCCCAGC
GGACAGAGGGTTGTGGTAGCAGGACCGACACACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGC
ACATTATGCCTCTCCGGCCGGCTCAATG
Found at i:17336405 original size:26 final size:26
Alignment explanation
Indices: 17336375--17336427 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17336365 GTTGACTTAG
17336375 GCATACGGAGTTCA-TCCGTAGTCTAA
1 GCATACGGAGTTCATTCC-TAGTCTAA
17336401 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17336427 G
1 G
17336428 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17336770 original size:342 final size:347
Alignment explanation
Indices: 17336046--17336771 Score: 796
Period size: 342 Copynumber: 2.1 Consensus size: 347
17336036 GTTGACTTAT
* * * *
17336046 GCATACAGAGTTCATTCCCACTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * **
17336111 CACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
66 CACGCA-GAGGGGATCGGCTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
* * * * *
17336176 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCTTGTCTAAGCCCTAGCTGG
130 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCCCCAGCTAG
* *
17336241 ACAGAGGGTTGTGGTAGCAGGACCGGCACTGGGATCGGCAGCATGCAGAGGGGGACCAGGCTGAT
195 ACAGAGGGTTGTGGCAGCAGGACC-GCA---GGA-CAGCAGCA-GCAGAGGGGGACCA-GCTGAT
* * * * * *
17336306 TCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
253 CCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCCAGCACGCTCATTTCATGGGTTGAC
* * * *
17336371 TTAGGCATACGGAGTTCATCCGTAGTCTAA
318 TTAGGAAAACGGAGTTCATCCGAAGTCCAA
* * * * *
17336401 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
17336466 GCACGTA-AGGGGATCGAGCT-AATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCAC
66 -CACGCAGAGGGGATCG-GCTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
* **
17336529 CTGCACGGC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
129 CCGCAC-GCTCGTTTCATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCCCCAGCT
*
17336592 CAGACTA-AGGGTTGTGGCAGCGGGA-C-CA-G-CAGCA-CA-CAGAGGGGGACC-GCATCGATC
193 -AGAC-AGAGGGTTGTGGCAGCAGGACCGCAGGACAGCAGCAGCAGAGGGGGACCAGC-T-GATC
* * * *
17336649 CCCGACTTGCGCATTCTGCCTCTCCGG-CTGGCTAAGCGCTAGCACGCTCATTTCGTGGGTTGGC
254 CCCGACTTGCGCATTATGCCTCTCCGGTC-GGCTAAGCGCCAGCACGCTCATTTCATGGGTTGAC
17336713 TTAGGAAAACGGAGTTCATTCC-AAGTCCAA
318 TTAGGAAAACGGAGTTCA-TCCGAAGTCCAA
*
17336743 GCATATGGAGTTCATTCCCAATCTAAGAT
1 GCATACGGAGTTCATTCCCAATCTAAGAT
17336772 TTCGAGCCAC
Statistics
Matches: 316, Mismatches: 46, Indels: 31
0.80 0.12 0.08
Matches are distributed among these distances:
340 2 0.01
341 2 0.01
342 116 0.37
343 3 0.01
344 2 0.01
345 4 0.01
347 1 0.00
351 2 0.01
353 2 0.01
354 115 0.36
355 62 0.20
356 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (347 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
CACGCAGAGGGGATCGGCTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCCCCAGCTAGA
CAGAGGGTTGTGGCAGCAGGACCGCAGGACAGCAGCAGCAGAGGGGGACCAGCTGATCCCCGACT
TGCGCATTATGCCTCTCCGGTCGGCTAAGCGCCAGCACGCTCATTTCATGGGTTGACTTAGGAAA
ACGGAGTTCATCCGAAGTCCAA
Found at i:17338151 original size:26 final size:26
Alignment explanation
Indices: 17338115--17338167 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17338105 GTTGACTTAG
*
17338115 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
17338141 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
17338167 G
1 G
17338168 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Done.