Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 149 of 402
Found at i:17338153 original size:679 final size:675
Alignment explanation
Indices: 17336856--17338157 Score: 2169
Period size: 679 Copynumber: 1.9 Consensus size: 675
17336846 GAAGCATTAC
* * * *
17336856 CGGAGAGCCTAACCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGGATGGGGGGGTGTGCGGACA
1 CGGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGGGACGGGGGGGTATGC-GACA
* *
17336921 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGA
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGA
*
17336986 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTC
* *
17337051 TAAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTT
195 TAAAATGGGGACACTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTG
* ** *
17337116 TTTTGTGCATGCCAAAAAAAATACAAGGATCGCCTCTACCAAATTTTGGGACAAAACGCTTTCTA
260 TTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTAAAAAATTTGGGGACAAAACGCTTTCTA
* **
17337181 AAAAATTTTAAAAAATCTGGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAACGGGTCGT
325 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAACGGGTCGT
*
17337246 CTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAATGG
390 CTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCACTGTATGAATTTACAAGCCATAAAATGG
* *
17337311 CATTGGCATGGCAAAAATAAGAAGTTGTGCTTGAACCCACCTACCATCCGTTCGATCCTCGGCTT
455 CATTGGCATGGCAAAAATAAGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTCGGCTT
17337376 GCGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATA
520 GCGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATA
*
17337441 CGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCAAAATCTAAGGTCAGACCAGACTAAGG
585 CGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCAAAATCTAAGGTCAGACCAGACTAAGG
17337506 GTTACGGCAGCAGGATCATGCATCGT
650 GTTACGGCAGCAGGATCATGCATCGT
* *
17337532 CGGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATT-GGGGGGCCGGGGGGTGTATGC-AGA
1 CGGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGGGACGGGGGG-GTATGCGACA
17337595 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAG
*
17337660 AACTCACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
129 AACTCACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAATAGCCATTAAAGTGT
* *
17337725 CTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAAT
194 CTAAAATGGGGACAC-TTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAAT
* * *
17337790 TGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTAAAAAATTTGGGGACAAAACTCTTTC
258 TGTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTAAAAAATTTGGGGACAAAACGCTTTC
* *
17337855 TAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGGG
323 T-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACGGG
* *
17337920 TCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCACTGTATGAATTTATACGCCATAAA
386 TCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCACTGTATGAATTTACAAGCCAT-AA
* * *
17337985 AATGGCATTGGCATTGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCGC-
450 AATGGCATTGGCATGGCAAAAATAAGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATC-CT
* * *
17338049 CGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
514 CGGCTTGCGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTA
17338114 GGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTC
579 GGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTC
17338158 CCAGTCTAAG
Statistics
Matches: 581, Mismatches: 38, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
674 39 0.07
675 114 0.20
676 147 0.25
677 50 0.09
678 66 0.11
679 164 0.28
680 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (675 bp):
CGGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGGGACGGGGGGGTATGCGACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCT
AAAATGGGGACACTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGT
TTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTAAAAAATTTGGGGACAAAACGCTTTCTAA
AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAACGGGTCGTC
TTGCCACGAAACTTCACATGAAGGCTTAGGGGACCACTGTATGAATTTACAAGCCATAAAATGGC
ATTGGCATGGCAAAAATAAGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTG
CGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCAAAATCTAAGGTCAGACCAGACTAAGGG
TTACGGCAGCAGGATCATGCATCGT
Found at i:17338442 original size:159 final size:159
Alignment explanation
Indices: 17338205--17338963 Score: 658
Period size: 159 Copynumber: 4.8 Consensus size: 159
17338195 CAGTATCGGT
* * * *
17338205 AGCACGCA-AGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTACCTC-TCTGGCCGACTGAGC
1 AGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTC-GACCGGCTGAGC
* * * * *
17338268 GACCGCACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCAAGTCTAAGCCCCAG-
65 GCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGA
* ** * *
17338332 TCGGACCGAGGGTTGTGGCACCGGTACCGGC
130 CCGGACCGAGGGTTGCAGCACTGG-ACCGAC
* * *
17338363 AGCACGCAGAGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCG
1 AGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
* * * * * ** *
17338428 CCCACACACTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAG-ATCGGAC
66 CCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGAC
** * *
17338492 CGGACCGAGGGTTGCAGCAACAAGATCGAT
131 CGGACCGAGGGTTGCAGC-ACTGGACCGAC
* * * * * *
17338522 AGCACGTAG-GAGGGGACCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
1 AGCACGCAGAG-GGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
* * * * * *
17338586 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
65 GCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGA
* * ** * *
17338650 CCAGACCGAGGCTTGTGGCAGTGGGACCGGC
130 CCGGACCGAGGGTTGCAGCACT-GGACCGAC
* * * * * * * *
17338681 AGCACGTAGAGGGGGA-CTGGGTCGATCCCC-AGCTTGTGCATTATGCCTCTCCGATCGGTTCAG
1 AGCACGCAGAGGGGGATC-GGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTTCGACCGGCTGAG
* * * * * * * ***
17338744 CTCCTACACGCTCATCTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAATATCC-G
64 CGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAG
* * * * *
17338808 ATCGGACTGAGGGTTGCAGCAGTTGGATCGAT
129 ACCGGACCGAGGGTTGCAGCA-CTGGACCGAC
* * *
17338840 AGCACGCAG-GGGGGATCGAGCCGATCCCCGGA-TTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
1 AGCACGCAGAGGGGGATCGGGCCGATCCCC-GACTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
* * *
17338903 ACCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATTACGGAGGTTCATTCCATGTCTAAGC
65 GCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCA-TACGGA-GTTCATTCCAAGTCTAAGC
17338964 ATACGAAGTT
Statistics
Matches: 476, Mismatches: 108, Indels: 32
0.77 0.18 0.05
Matches are distributed among these distances:
158 82 0.17
159 369 0.78
160 25 0.05
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
CCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGAC
CGGACCGAGGGTTGCAGCACTGGACCGAC
Found at i:17338724 original size:318 final size:316
Alignment explanation
Indices: 17338141--17338963 Score: 1013
Period size: 318 Copynumber: 2.6 Consensus size: 316
17338131 CCCAGTCTAA
* * * * *
17338141 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGTAGCAGTATCGGTA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAG-ATCGATA
* * * * * *
17338206 GCACGCAAGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTACCTC-TCTGGCCGACTGAGCGA
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGAGCGC
* * * *
17338270 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCAAGTCTAAGCCCCAGTCG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * *
17338335 GACCGAGGGTTGTGGCACCGGTACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCTCGACTTGC
194 GACCGAGGCTTGTGGCACCGGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGC
* * * * *
17338400 GCATTATGCCTCTTCGACCGGCTCAGCGCCCACACACTCGTTTCGTGGGTTGACTTAT
259 GCATTATGCCTCTCCGACCGGCTCAGCGCCCACACACTCATCTCATGGGTTGACTTAG
* *
17338458 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAACAAGATCGATA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGC-AGATCGATA
* * * * **
17338523 GCACGTAGGAGGGGACCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGC
65 GCACGCAGG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
* *
17338588 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
** * *
17338653 GACCGAGGCTTGTGGCAGTGGGACCGGCAGCACGTAGAGGGGGA-CTGGGTCGATCCCC-AGCTT
194 GACCGAGGCTTGTGGCACCGGGACCGGCAGCACGCAGAGGGGGATC-GGGCCGATCCCCGA-CTT
* * * * * *
17338716 GTGCATTATGCCTCTCCGATCGGTTCAGCTCCTACACGCTCATCTCATGGGTTGACTTAG
257 GCGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACACTCATCTCATGGGTTGACTTAG
* * * * * * **
17338776 GCATACGGAGTTCATTCCTAGTCTAATATCCGATCGGACTGAGGGTTGCAGCAGTTGGATCGATA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAG-CAGATCGATA
* * * *
17338841 GCACGCAGGGGGGATCGAGCCGATCCCCGGATTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
** * *
17338906 CATACGCTCGTTTCGTGGGTTGGCTTAGGCATTACGGAGGTTCATTCCATGTCTAAGC
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCA-TAGGGA-GTTCATTCCATGTCTAAGC
17338964 ATACGAAGTT
Statistics
Matches: 430, Mismatches: 68, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
317 137 0.32
318 272 0.63
319 21 0.05
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGATCGATAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGCTTGTGGCACCGGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGC
ATTATGCCTCTCCGACCGGCTCAGCGCCCACACACTCATCTCATGGGTTGACTTAG
Found at i:17340354 original size:26 final size:26
Alignment explanation
Indices: 17340318--17340370 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17340308 GTTGACTTAG
17340318 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * *
17340344 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17340370 G
1 G
17340371 ATTGGGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17341085 original size:171 final size:169
Alignment explanation
Indices: 17340637--17341086 Score: 415
Period size: 170 Copynumber: 2.6 Consensus size: 169
17340627 CGGTAGGTGA
* * * * *
17340637 GACCAAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCACTCGCACG-ATTAT
1 GACCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCA-TGT
* * ** * *
17340701 TTCATGGGTTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG
65 TTCATGGGTTGGCTTAGGCATACGGAGTTCA-TCCCAGTCTAAGCCCAGACTAGACCAAGGGTTG
* ** ** * *
17340766 TGGTAGTAAGACCAGTAGCAGGATCAACAGCACGCAGGGGG
129 CGACACCAAGACCAGCAACAGGATCAACAGCACGCAGGGGG
* * * * * * * *
17340807 GACCGAGCTGATCCCCGACTTGCGAATTCTACCTCTCCG-GCTAGCTGAGTGCCTGCACGC-TCG
1 GACCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGA-CTGAGCGCCCGCACGCAT-G
* * * * *
17340870 TTTCGTGGGTTGGCCTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCTAGTC-AGACCAAGGGT
64 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCA-GTCTAAGCCC-AGACTAGACCAAGGGT
* * * * **
17340934 TGCGACACCAGGACTAGCAACGGGATCGACAGCACTTAGAGGGG
127 TGCGACACCAAGACCAGCAACAGGATCAACAGCACGCAG-GGGG
* * * *
17340978 GATCGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCATGTT
1 GACCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCATGTT
17341043 TCATGGG-TGGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
66 TCATGGGTTGG-CTTAGGCATACGGAGTTCAT-CCCAGTCTAAGC
17341087 ATACGGAGTT
Statistics
Matches: 217, Mismatches: 53, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
169 6 0.03
170 118 0.54
171 87 0.40
172 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (169 bp):
GACCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCATGTT
TCATGGGTTGGCTTAGGCATACGGAGTTCATCCCAGTCTAAGCCCAGACTAGACCAAGGGTTGCG
ACACCAAGACCAGCAACAGGATCAACAGCACGCAGGGGG
Found at i:17341089 original size:26 final size:26
Alignment explanation
Indices: 17341059--17341111 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17341049 GTGGACTTAG
17341059 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17341085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17341111 G
1 G
17341112 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17341447 original size:159 final size:158
Alignment explanation
Indices: 17341085--17341588 Score: 550
Period size: 158 Copynumber: 3.2 Consensus size: 158
17341075 CCCAGTCTAA
* * * *
17341085 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAACAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
17341150 GTACGTAGGGGGGACCAGGCCAATCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTAAGCGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
* * * *
17341215 CGCATGCCCGTTTAATGGGTTGGA-TTAG
131 CGCACGCTCATTTCATGGGTT-GACTTAG
* ** * * * ** *
17341243 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAAATTGAGGGTTGTGGTAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGA
* * * * * * * * *
17341306 CAACACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCGCTACGGTCGGCTCAGT
64 CAGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGC
*
17341371 GCCCGCACGCTCATTTCATGGGTTGACTTAT
128 GCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * *
17341402 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGACA
* * *
17341467 GCATGTAGGGGGGACCGCGCCGATCCCCGGC-TAGCGCATTCTGCCTCTCCGG-CTGGCTGAGCG
66 GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTA-CGCATTCTGCCTCTCCGGTC-GGCTAAGCG
* *
17341530 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCATGGGTTGACTTAG
17341560 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
17341589 TTTAAGCCAC
Statistics
Matches: 278, Mismatches: 60, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 6 0.02
158 151 0.54
159 118 0.42
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGACA
GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
CGCACGCTCATTTCATGGGTTGACTTAG
Found at i:17342292 original size:26 final size:26
Alignment explanation
Indices: 17342256--17342305 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17342246 GTTGACTTAG
*
17342256 GCATATGGAGTTCATCCCCAGTCTGA
1 GCATACGGAGTTCATCCCCAGTCTGA
* *
17342282 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
17342306 AAGATCGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTGA
Found at i:17342627 original size:26 final size:26
Alignment explanation
Indices: 17342598--17342650 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17342588 GGTGGCTTAG
17342598 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17342624 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17342650 G
1 G
17342651 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17342876 original size:342 final size:342
Alignment explanation
Indices: 17342191--17342967 Score: 955
Period size: 342 Copynumber: 2.3 Consensus size: 342
17342181 TTCGATCCGA
* *
17342191 GGCTTGCGCATCCTGCCTCTTTGG-TCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
1 GGCTTGCGCATTCTGCCTCTTCGGCT-GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
* * * * *
17342255 GGCATATGGAGTTCATCCCCAGTCTGAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGA
65 GGCATACGGAGTTCAT-TCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * *
17342320 CCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGCGGGACCGGGCCGATCCCTGGTTTACGCA
129 CCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGCGGGACCGAGCCGATCCCCGGCTTACACA
* * * ** * *
17342385 TCCTGCCTCTCTGGCCGGCTGCCCGCCTGCACACCCGTTTCGTTGATTCGCTTAGCCATAGGGAG
194 TCCTGCCTCTCCGGCCGACTGACCGCCCACACACCCATTTCGTGGATTCGCTTAGCCATAGGGAG
* * * *
17342450 TTCATTCCAAGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAG
259 TGCACTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAG
* ***
17342515 GGGGACCGGGTTGATCCCC
324 GGGGACCAGACCGATCCCC
* * * * * * *
17342534 GGCTTACGCATTCTACCTCTTCGGCTGGCTGAGCACCCTTACGCTCATTTCATGGG-TGGCTTAG
1 GGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* *
17342598 GCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
66 GCATACGGAGTTCATTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * *
17342663 CAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCACAT
130 CAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGCGGGACCGAGCCGATCCCCGGCTTACACAT
* * * * * *
17342728 TCTGCCTCTCCGGCCGACTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
195 CCTGCCTCTCCGGCCGACTGACCGCCCACACACCCATTTCGTGGATTCGCTTAGCCATAGGGAGT
* * * * *
17342793 GCACTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGG
260 GCACTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAGG
17342858 GGGACCAGACCGATCCCC
325 GGGACCAGACCGATCCCC
* * * * * * * * *
17342876 GACTTGCGTATTATGCCTCTCCGGCCGACTCAGTGCCCGTACACTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
17342941 GCATACGGAGTTCATTGCCAGTCTAAG
66 GCATACGGAGTTCATT-CCAGTCTAAG
17342968 ATCGGATCAG
Statistics
Matches: 362, Mismatches: 68, Indels: 8
0.83 0.16 0.02
Matches are distributed among these distances:
341 3 0.01
342 279 0.77
343 76 0.21
344 4 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (342 bp):
GGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
AAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGCGGGACCGAGCCGATCCCCGGCTTACACATC
CTGCCTCTCCGGCCGACTGACCGCCCACACACCCATTTCGTGGATTCGCTTAGCCATAGGGAGTG
CACTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAGGG
GGACCAGACCGATCCCC
Found at i:17343090 original size:159 final size:157
Alignment explanation
Indices: 17342624--17343090 Score: 459
Period size: 159 Copynumber: 2.9 Consensus size: 157
17342614 CCATGTCTAA
* * *
17342624 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * *
17342689 GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCC
65 GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCC
* * *
17342754 CACACGCCCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGACTTAG
* * * * ** * * * * *
17342782 GCATAGGGAGTGCACTCCATGTCTAAG-CCCTAGCCGGACCGAGGGTTGTGGTAGCGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-TCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * ** * *
17342846 AGCACGCAGAGGGGGACCAGACCGATCCCCGACTTGCGTATTATGCCTCTCCGGCCGACTCAGTG
64 AGCACGTAG-GGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCG
* * *
17342911 CCCGTACACTCGTTTCGTGGGTTGACTTAG
128 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * *
17342941 GCATACGGAGTTCATTGCCAGTCTAAGATCGGATCAGATCGAGGGTTACGATAGTAGGATTGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * ** * *
17343006 GCACATAGGGCGGGATTGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGATCGGCTAAACGC
65 GCACGTAGGG-GGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGC
* *
17343071 CCGCATGCTCATTTTGTGGG
129 CCGCACGCTCATTTCGTGGG
17343091 GCATACAGAG
Statistics
Matches: 236, Mismatches: 67, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
157 5 0.02
158 54 0.23
159 172 0.73
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:17343506 original size:26 final size:26
Alignment explanation
Indices: 17343470--17343522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17343460 GTTGACTTAG
*
17343470 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17343496 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17343522 G
1 G
17343523 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17344008 original size:26 final size:26
Alignment explanation
Indices: 17343972--17344024 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17343962 GTTGGCTTAG
*
17343972 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17343998 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17344024 G
1 G
17344025 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17349946 original size:16 final size:17
Alignment explanation
Indices: 17349919--17349953 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
17349909 TTCAAGAGTA
17349919 TTATTCTTATTTTTATT
1 TTATTCTTATTTTTATT
17349936 TTATT-TTATTTTTATT
1 TTATTCTTATTTTTATT
17349952 TT
1 TT
17349954 TTGCAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (17 bp):
TTATTCTTATTTTTATT
Found at i:17350149 original size:56 final size:56
Alignment explanation
Indices: 17349986--17350303 Score: 451
Period size: 57 Copynumber: 5.6 Consensus size: 56
17349976 AAAAAGAAAT
**
17349986 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAAA
1 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-CCAAAAAA
*
17350043 AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTTAAAATAAAATTT-CAAAAAA
1 A--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTCCAAAAAA
17350101 AGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAA
1 A-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAA
* * * *
17350158 TATTTTTGGGGAAAAGTTGAAAGTACCAATTTTCCTTGAAAATAAATCTTCCAAAAAT
1 -ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAT-TTCCAAAAAA
* *
17350216 ATTTTTG-GGGAAATTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAA
1 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAA
* *
17350271 TATTTTTGGGGAAAAGTTAAAAGTATCAATTTT
1 -ATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
17350304 TCCTACACGA
Statistics
Matches: 238, Mismatches: 15, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
55 9 0.04
56 47 0.20
57 119 0.50
58 17 0.07
59 40 0.17
60 6 0.03
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (56 bp):
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAA
Found at i:17350264 original size:113 final size:113
Alignment explanation
Indices: 17349982--17350303 Score: 495
Period size: 113 Copynumber: 2.8 Consensus size: 113
17349972 TTTCAAAAAG
** *
17349982 AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAAAAGGT
1 AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAATA--T
* *
17350047 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTTAAAATAAAATTTCAA
64 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCAA
*
17350097 AAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAATATT
1 AAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAATATT
*
17350162 TTTGGGGAAAAGTTGAAAGTACCAATTTTCCTTGAAAAT-AAATCTTCCAA
65 TTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAT-TT-CAA
* *
17350212 AAATATTTTTG-GGGAAATTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAATATTT
1 AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAATATTT
*
17350276 TTGGGGAAAAGTTAAAAGTATCAATTTT
66 TTGGGGAAAAGTTGAAAGTATCAATTTT
17350304 TCCTACACGA
Statistics
Matches: 192, Mismatches: 12, Indels: 8
0.91 0.06 0.04
Matches are distributed among these distances:
113 81 0.42
114 46 0.24
115 11 0.06
116 54 0.28
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (113 bp):
AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAATATTT
TTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCAA
Found at i:17353256 original size:158 final size:158
Alignment explanation
Indices: 17352987--17353278 Score: 372
Period size: 158 Copynumber: 1.8 Consensus size: 158
17352977 AGGGTTGCGA
* * * * *
17352987 CAGCAAGATCGACAGCATGTAAGGGGGACCAAGTCGATCCCTGGCTTTCGCATTATGCCTCTCCG
1 CAGCAAGATCGACAGCACGCAAGGGGGACCAACTCGATCCCCGGCTTGCGCATTATGCCTCTCCG
* * * * *
17353052 ATCGGCTCAGCGCCTGCACACACATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GT
66 ACCAGCTCAGCACCTGCACACACATTTTGTGGGTTGACTTAAGCATACAGAGTTCATT-CCATGT
17353116 CTAAGATCAGATCGGGCCAAAGGTTGTGG
130 CTAAGATCAGATCGGGCCAAAGGTTGTGG
* * * *
17353145 CAGCAGGATCGACAGCACGCAGGGGGGACCGAACT-GATCCCCGGGTTGCGCATTCTGCCTCTCC
1 CAGCAAGATCGACAGCACGCAAGGGGGACC-AACTCGATCCCCGGCTTGCGCATTATGCCTCTCC
* * * * * *
17353209 GGCCAGTTGAGCACCTGCACACTCGTTTTGTGGGTTGGCTTAAGCATACAGAGTTCATTCCATGT
65 GACCAGCTCAGCACCTGCACACACATTTTGTGGGTTGACTTAAGCATACAGAGTTCATTCCATGT
17353274 CTAAG
130 CTAAG
17353279 TATATGGAGT
Statistics
Matches: 112, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
157 3 0.03
158 106 0.95
159 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CAGCAAGATCGACAGCACGCAAGGGGGACCAACTCGATCCCCGGCTTGCGCATTATGCCTCTCCG
ACCAGCTCAGCACCTGCACACACATTTTGTGGGTTGACTTAAGCATACAGAGTTCATTCCATGTC
TAAGATCAGATCGGGCCAAAGGTTGTGG
Found at i:17354470 original size:724 final size:722
Alignment explanation
Indices: 17353013--17354566 Score: 1833
Period size: 724 Copynumber: 2.1 Consensus size: 722
17353003 ATGTAAGGGG
* * * *
17353013 GACCAAGTCGATCCCTGGCTTTCGCATTATGCCTCTCCGATCGGCTCAGCGCCTGCACACACATT
1 GACCAGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTACACACACATT
* * * * * **
17353078 TTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCAAAGGTTGT
66 TTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTAC
** *
17353143 GGCAGCAGGATCGACAGCACGCAGGGGGGACCGAACTGATCCCCGGGTTGCGCATTCTGCCTCTC
131 GGCAGCAGGATCGACAGCACGCAGGGGGGACCGAACCAATCCCCGGGTTACGCATTCTGCCTCTC
* **
17353208 CGGCCAGTTGAGCACCTGCACACTCGTTTTGTGGGTTGGCTTAAGCATACAGAGTTCATTCCATG
196 CGGCCAGTTGAGCACCTGCACACTCATTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCCATG
* * * * *
17353273 TCTAAGTATATGGAGTTCATTCCCAGTCTAACATTGGACTAGACCGAGGGTTACAATAGCAGGAC
261 TATAAGCATACGAAGTTCATTCCCAGTCTAACATCGGACTAGACCGAGGGTTACAATAGCAGGAC
* * * * * *
17353338 CAGCAGCAGATTGATAGCACATAGGGGGGGATCGGGTCGATCACCGGCTTGCACATTCTGCCTCT
326 CAGCAGCAGATAGACAGCACACAGGGGGGGACCGGGTCAATCACCGACTTGCACATTCTGCCTCT
* * *
17353403 CCGACCAACTGAGCGCCCTCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTGATTCCAT
391 CCGACCAACTGAGCACCCTCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTGATTCCAT
* * * * * *
17353468 GTTTAAGTCCCTATCGGACCGAGGGTTATGGCAATAAGACCAGCAACAGGATCGATAGCATGCAA
456 GTCTAAGTCCCCATCGGACCGAGGGTTATGGCAACAAAACCAGCAACAGGATCGACAGCACGCAA
* * * * * * ** *
17353533 AGGCGGACTGGGCTGATCCTCGGCTTGCGTATTATGCCTCTCCGACTGATTTTTTCGGTCGACTG
521 AGGCGGACCGGGCTGATCCTAGGCTTGCGCATTATGCCTCTCCGACCGATTCTCTCGACCGACTA
* * *
17353598 AGTGCCCGCACACTGATTTCATGGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATA
586 AGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCTTACCGAGTTCATCCCCAGTCTAAGCATA
*
17353663 TGGAGATCATTCCCAGTCTAAGATCAGACTAGACCGCAGGTTGCGGCAGCAGGATAGGCAGCACG
651 TGGAGATCATTCCCAGTCTAAGATCAGACTAGACCGCAGGTTACGGCAGCAGGATAGGCAGCACG
17353728 CAAAGGA
716 CAAAGGA
* * ** *
17353735 GACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCTACATGCACGTT
1 GACCAGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTACACACACATT
* * *
17353800 TTATGGGTTGACTTTGGCATATAGAGTTCCTTCCCAGTCTAAGATCAGACCAGACCAAAGGTTAC
66 TTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTAC
* * * * * * * *
17353865 GGTAGCAGGATCGATAGCATGCAGGGGATGATCGAGCCAATCCTCGGTTTACGCATTCTGCCTCT
131 GGCAGCAGGATCGACAGCACGCAGGGG-GGACCGAACCAATCCCCGGGTTACGCATTCTGCCTCT
** * ** * *
17353930 CCGATC-GATTGATCACCTGCACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
195 CCGGCCAG-TTGAGCACCTGCACACTCATTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCCA
* * * * **
17353994 TGTATAAGCATACGAAGTTCATTCCTAGTCTAACATCGGACTGGATCGAGGGTTGCGGTAGCAGG
259 TGTATAAGCATACGAAGTTCATTCCCAGTCTAACATCGGACTAGACCGAGGGTTACAATAGCAGG
* * * * *
17354059 ACCAGTAGTAGGATAGGCAGCACGCAGGGGGGGACCGGGTCAATCCCCGACTTGCACATTCTGCC
324 ACCAGCAGCA-GATAGACAGCACACAGGGGGGGACCGGGTCAATCACCGACTTGCACATTCTGCC
* ** * * *
17354124 TCTTCGGTCGACTGAGCACCCTCACTCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTGATTC
388 TCTCCGACCAACTGAGCACCCTCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTGATTC
* * * * * *
17354189 CATGTCTAAG-CCCCAGTCGGACCGAGGGTTATGGTAGCAAAATCGGTAACGGGATCGACAGCAC
453 CATGTCTAAGTCCCCA-TCGGACCGAGGGTTATGGCAACAAAACCAGCAACAGGATCGACAGCAC
* * *
17354253 GCAGAGGGGGACCGGGCTGATCCTAGGCTTGCGCATTATGCCTCTTCGACCGACTTCTCT-GACC
517 GCAAAGGCGGACCGGGCTGATCCTAGGCTTGCGCATTATGCCTCTCCGACCGA-TTCTCTCGACC
* *
17354317 GGCTAAGCGCTCGCACACTCATTTCATGGGTTGACTTAGGCTTACCGAGTTCATCCCCAGTCTAA
581 GACTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCTTACCGAGTTCATCCCCAGTCTAA
* * * * *
17354382 GCATACT-GAGTTCATTCCTAGTCTAAGATCAGA-TCAGACCGCGGGTTACGGTAGCAGGATTGG
646 GCATA-TGGAGATCATTCCCAGTCTAAGATCAGACT-AGACCGCAGGTTACGGCAGCAGGATAGG
* ** *
17354445 CAGCATGCAGGGGG
709 CAGCACGCAAAGGA
*** * * * * * * * * * * * *
17354459 GATTGGGTCGATCCCTAGCTTGCACATTCTGCCTCTCCGATCAGTTGAGCCCCTGCACGCCCGTT
1 GACCAGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTACACACACATT
* * **
17354524 TCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
66 TTATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
17354567 CCCCAGCCAG
Statistics
Matches: 692, Mismatches: 132, Indels: 14
0.83 0.16 0.02
Matches are distributed among these distances:
722 136 0.20
723 151 0.22
724 400 0.58
725 5 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (722 bp):
GACCAGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTACACACACATT
TTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTAC
GGCAGCAGGATCGACAGCACGCAGGGGGGACCGAACCAATCCCCGGGTTACGCATTCTGCCTCTC
CGGCCAGTTGAGCACCTGCACACTCATTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCCATG
TATAAGCATACGAAGTTCATTCCCAGTCTAACATCGGACTAGACCGAGGGTTACAATAGCAGGAC
CAGCAGCAGATAGACAGCACACAGGGGGGGACCGGGTCAATCACCGACTTGCACATTCTGCCTCT
CCGACCAACTGAGCACCCTCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTGATTCCAT
GTCTAAGTCCCCATCGGACCGAGGGTTATGGCAACAAAACCAGCAACAGGATCGACAGCACGCAA
AGGCGGACCGGGCTGATCCTAGGCTTGCGCATTATGCCTCTCCGACCGATTCTCTCGACCGACTA
AGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCTTACCGAGTTCATCCCCAGTCTAAGCATA
TGGAGATCATTCCCAGTCTAAGATCAGACTAGACCGCAGGTTACGGCAGCAGGATAGGCAGCACG
CAAAGGA
Found at i:17354559 original size:368 final size:357
Alignment explanation
Indices: 17353362--17354596 Score: 965
Period size: 368 Copynumber: 3.4 Consensus size: 357
17353352 TAGCACATAG
* * *
17353362 GGGGGGATCGGGTCGATCACCGGCTTGCACATTCTGCCTCTCCGACCAACTGAGCGCCCTCACGC
1 GGGGGGACCGGGTCGATC-CCGGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCTCACGC
* * * * * *
17353427 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTTTAAGTCCCTA-TCGGACCGAG
65 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACCAAG
* ** * * *
17353491 GGTTATGGCAATAAGACCAGCAACAGGATCGATAGCATGCAAAGGCGGACTGGGCTGATCCTCGG
129 GGTTATGGTAGCAA-A-C-G-AAC-GGATCGATAGCATGCAGAGGGGGACCGGGCTGATCCTCGG
* * * * * * *
17353556 CTTGCGTATTATGCCTCTCCGACTGATTTTTTCGGTCGACTGAGTGCCCGCACACTGATTTCATG
189 CTTGCGCATTATGCCTCTCCGACCGA--TTTT--GACG-CTAAGCGCTCGCACACTCATTTCATG
* *
17353621 GGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATA-TGGAGATCATTCCCAGTCTAAG
249 GGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATACT-GAGTTCATTCCTAGTCTAAG
* * *
17353685 ATCAGACTAGACCGCAGGTTGCGGCAGCAGGATAGGCAGCACGCA
313 ATCAGACTAGACCGCGGGTTGCGGTAGCAGGATTGGCAGCACGCA
** * * * * * * ** *
17353730 AAGGAGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAG-TGCCTACATG
1 GGGGGGACCGGGTCGAT-CCCGGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCT-CACG
* * * * ** * **
17353794 CACGTTTTATGGGTTGACTTTGGCATATAGAGTTCCTTCCCA-GTCTAAG-ATCAGACCAGACCA
64 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCA
* * * * * ** *
17353857 AAGGTTACGGTAG----C--A-GGATCGATAGCATGCAG-GGGATGATCGAGCCAATCCTCGGTT
127 AGGGTTATGGTAGCAAACGAACGGATCGATAGCATGCAGAGGG-GGACCGGGCTGATCCTCGGCT
* * * * ** *
17353914 TACGCATTCTGCCTCTCCGATCGA--TTGA---TCA-C-CT-GCACGTTCATTTCATGGGTTGGC
191 TGCGCATTATGCCTCTCCGACCGATTTTGACGCTAAGCGCTCGCACACTCATTTCATGGGTTGAC
* * * * *
17353971 TTAGGCATACGGAGTTCAT-TCCATGTATAAGCATAC-GAAGTTCATTCCTAGTCTAACATCGGA
256 TTAGGCTTACGGAGTTCATCCCCA-GTCTAAGCATACTG-AGTTCATTCCTAGTCTAAGATCAGA
* * *
17354034 CTGGATCGAGGGTTGCGGTAGCAGGACCAGTAGTAGGATAGGCAGCACGCA
319 CTAGACCGCGGGTTGCGGTAGCA-G----G-A-T----T-GGCAGCACGCA
* * * **
17354085 GGGGGGGACCGGGTCAATCCCCGACTTGCACATTCTGCCTCTTCGGTC-GACTGAGCACCCTCAC
1 -GGGGGGACCGGGTCGAT-CCCGGCTTGCACATTCTGCCTCTCCGACCAG-CTGAGCACCCTCAC
* * * * * * * *
17354149 TCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTGATTCCATGTCTAAGCCCCAGTCGGACCGA
63 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAA
* * *
17354214 GGGTTATGGTAGCAAAATCGGTAACGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTAG
128 GGGTTATGGTAGC-AAA-C-G-AAC-GGATCGATAGCATGCAGAGGGGGACCGGGCTGATCCTCG
*
17354279 GCTTGCGCATTATGCCTCTTCGACCGACTTCTCTGACCGGCTAAGCGCTCGCACACTCATTTCAT
188 GCTTGCGCATTATGCCTCTCCGACCGA-TT-T-TGA-C-GCTAAGCGCTCGCACACTCATTTCAT
*
17354344 GGGTTGACTTAGGCTTACCGAGTTCATCCCCAGTCTAAGCATACTGAGTTCATTCCTAGTCTAAG
248 GGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATACTGAGTTCATTCCTAGTCTAAG
* *
17354409 ATCAGA-TCAGACCGCGGGTTACGGTAGCAGGATTGGCAGCATGCA
313 ATCAGACT-AGACCGCGGGTTGCGGTAGCAGGATTGGCAGCACGCA
** * * *
17354454 GGGGGGATTGGGTCGATCCCTAGCTTGCACATTCTGCCTCTCCGATCAGTTGAGC-CCCTGCACG
1 GGGGGGACCGGGTCGATCCC-GGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCT-CACG
* *
17354518 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAG
64 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAG
* *
17354583 GGTTGTGGGAGCAA
129 GGTTATGGTAGCAA
17354597 GACTGGCAGC
Statistics
Matches: 660, Mismatches: 149, Indels: 117
0.71 0.16 0.13
Matches are distributed among these distances:
342 4 0.01
343 86 0.13
344 2 0.00
346 2 0.00
348 1 0.00
349 1 0.00
350 2 0.00
352 2 0.00
355 17 0.03
356 141 0.21
357 6 0.01
358 1 0.00
362 2 0.00
366 2 0.00
367 12 0.02
368 254 0.38
369 18 0.03
370 1 0.00
372 1 0.00
373 3 0.00
374 1 0.00
375 1 0.00
376 1 0.00
378 2 0.00
379 1 0.00
380 4 0.01
381 88 0.13
382 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (357 bp):
GGGGGGACCGGGTCGATCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCTCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGG
TTATGGTAGCAAACGAACGGATCGATAGCATGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGC
ATTATGCCTCTCCGACCGATTTTGACGCTAAGCGCTCGCACACTCATTTCATGGGTTGACTTAGG
CTTACGGAGTTCATCCCCAGTCTAAGCATACTGAGTTCATTCCTAGTCTAAGATCAGACTAGACC
GCGGGTTGCGGTAGCAGGATTGGCAGCACGCA
Found at i:17354909 original size:26 final size:26
Alignment explanation
Indices: 17354859--17354911 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17354849 ATTGGCTTAG
*
17354859 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17354885 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17354911 G
1 G
17354912 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17355663 original size:26 final size:26
Alignment explanation
Indices: 17355633--17355685 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17355623 TTTGACTTAG
17355633 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17355659 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17355685 G
1 G
17355686 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17355867 original size:26 final size:26
Alignment explanation
Indices: 17355831--17355882 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17355821 TTGACTTAGC
17355831 CATACGGAGTTCA-TCCTCAGTCTAAG
1 CATACGGAGTTCATTCCT-AGTCTAAG
17355857 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
17355883 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:17356739 original size:26 final size:26
Alignment explanation
Indices: 17356709--17356761 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17356699 GTTGACTTAG
*
17356709 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
17356735 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17356761 G
1 G
17356762 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17357097 original size:159 final size:157
Alignment explanation
Indices: 17356742--17357166 Score: 379
Period size: 159 Copynumber: 2.7 Consensus size: 157
17356732 TAAGCATACA
* * **
17356742 GAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGTGACAGCAGGATCGGTAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCA-ACCAGATCGAGGGTTGTGACAGCAGGACCGACAGCACACA
** * * * ** *
17356807 GGGGGGATTGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGTGCCCGTACGT
65 GGGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTCAGACCGGCTCAACGCCCATACGT
** *
17356872 CCATTTTGTGGGTTGGCTTAGGAATAGG
130 CCATTTCATGGGTTGACTTAGGAATAGG
* ** * * * * **
17356900 GAGTTTATT-CCATGTCTAAGCCCCAGCCAGGTCTAGGGTTGTGGCAGCAGGACCGACAGCATGC
1 GAGTTCATTCCCA-GTCTAAG-ATCAACCAGATCGAGGGTTGTGACAGCAGGACCGACAGCACAC
** * *
17356964 AGAGGGGGACCGGGTTGATCCTCGGCTTGCGCATTATGCCTCTTCAG-CCGGTTCAACGCCCATA
64 AG-GGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTC-TCAGACCGGCTCAACGCCCATA
* * *
17357028 CG-CTCATTTCATGGGTTGACTTATGCATATG
127 CGTC-CATTTCATGGGTTGACTTAGGAATAGG
* ** * * ** *
17357059 GAGTTCGTTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGGCAGCTGGATTGACAACACACA
1 GAGTTCATTCCCAGTCTAAGATC-AACCAGATCGAGGGTTGTGACAGCAGGACCGACAGCACACA
* * *
17357124 GTGGGGGATCAGGCCGATCCTCGGCTTGCACATTCTGCCTCTC
65 G-GGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTC
17357167 TGGCCAGCTT
Statistics
Matches: 207, Mismatches: 53, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 50 0.24
159 148 0.71
160 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAACCAGATCGAGGGTTGTGACAGCAGGACCGACAGCACACAG
GGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTCAGACCGGCTCAACGCCCATACGTC
CATTTCATGGGTTGACTTAGGAATAGG
Found at i:17357653 original size:26 final size:26
Alignment explanation
Indices: 17357617--17357669 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17357607 GTTGGCTTAT
17357617 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17357643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17357669 G
1 G
17357670 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17358372 original size:25 final size:26
Alignment explanation
Indices: 17358334--17358385 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17358324 GTTGACATAG
*
17358334 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
17358359 GCATATGGATTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
17358385 G
1 G
17358386 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:17358719 original size:158 final size:158
Alignment explanation
Indices: 17358557--17358847 Score: 341
Period size: 158 Copynumber: 1.8 Consensus size: 158
17358547 ATTCGGATTG
* * * * * *
17358557 AGGGTTGTGGCAACGGGACCG-CAGCACACAGAGGGGGACTGAGCCGATCCTCGGCTTGCATATT
1 AGGGTTGCGACAACAGGACCGACAGCACACAG-GGGGGACCGAGCCGATCCCCGGCTTGCACATT
* * * ** *
17358621 ATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTTGTTTCATGGGTTGACTTATGCATACGGAGTT
65 ATACCTCTCCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
17358686 CATTCCCAGTCTAAGATCAGACTGAACCA
130 CATTCCCAGTCTAAGATCAGACTGAACCA
* ** ** * * * * *
17358715 AGGGTTGCGATAGTAGGATTGACAGCACATAGGGGGGACCGAGCTGATCCCCGGTTTGCGCATTC
1 AGGGTTGCGACAACAGGACCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTA
* * *
17358780 TACCTCTCCGACCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
66 TACCTCTCCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
17358845 ATT
131 ATT
17358848 TCATGTCTAA
Statistics
Matches: 107, Mismatches: 25, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
158 98 0.92
159 9 0.08
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGGGTTGCGACAACAGGACCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTA
TACCTCTCCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACTGAACCA
Found at i:17359585 original size:26 final size:26
Alignment explanation
Indices: 17359555--17359607 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17359545 GTTGACTTAG
17359555 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
** *
17359581 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
17359607 G
1 G
17359608 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:17360093 original size:26 final size:26
Alignment explanation
Indices: 17360057--17360109 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17360047 GTTGGCTTAG
17360057 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17360083 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17360109 G
1 G
17360110 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17360835 original size:159 final size:158
Alignment explanation
Indices: 17360514--17360953 Score: 386
Period size: 159 Copynumber: 2.8 Consensus size: 158
17360504 TAGGATCGGT
* *
17360514 AGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGCGTATTATGCCTTTTCGACCGGCTGAGTG
1 AGCACGCAAAGGGGGACCGAGCCGATCCCTGGCTTGCGTATTATGCCTTTTCGACCGGCTGAGCG
* * * * *
17360579 CCCGTACACCCATTTCGTGGGTTGGCTTAGTCATAGCGAGTTCATT-CCATGTCTAAGCCCCAAT
66 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG-CATA-CGAGTTCATTCCCATGTCTAAGCCCCAAC
* * * * *
17360643 AGGCCCGACGGTTGTGGCAGCGGGACCGGC
129 AGGACCGACGGCTATGGCAGCAGGACCGAC
* *
17360673 AGCACGCAAAGGGGGACCGAGCCGATCCCTGGCTTGCGTATTATGCCTTTTCGACCGGCTCAACG
1 AGCACGCAAAGGGGGACCGAGCCGATCCCTGGCTTGCGTATTATGCCTTTTCGACCGGCTGAGCG
* * * ****
17360738 CCTGCACGCTCGTTTCGTTGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAA-CATTGGA
66 CCCGCACGCTCGTTTCGTGGGTTGGCTTA-GCATACG-AGTTCATTCCCATGTCTAAGC-CCCAA
* * * * **
17360801 CCGGACTGAGGGCTATGGCAGTAGGATTGAC
128 CAGGACCGACGGCTATGGCAGCAGGACCGAC
** * ** * * ** ** * * * * *
17360832 AGCA-GGTAGGGGGGATTGGGTCGATCCCCAGCTTGCACATTCTACCTCTCCGGCCGGCTGAGCG
1 AGCACGCAAAGGGGGACCGAGCCGATCCCTGGCTTGCGTATTATGCCTTTTCGACCGGCTGAGCG
*
17360896 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCTTGTCTAAGC
66 CCCGCACGCTCGTTTCGTGGGTTGGCTTA-GCATAC-GAGTTCATTCCCATGTCTAAGC
17360954 ATACAGAGTT
Statistics
Matches: 224, Mismatches: 50, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 91 0.41
159 127 0.57
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCACGCAAAGGGGGACCGAGCCGATCCCTGGCTTGCGTATTATGCCTTTTCGACCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGCATACGAGTTCATTCCCATGTCTAAGCCCCAACAG
GACCGACGGCTATGGCAGCAGGACCGAC
Found at i:17360962 original size:26 final size:26
Alignment explanation
Indices: 17360926--17360978 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17360916 GTTGGCTTAG
* **
17360926 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17360952 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17360978 G
1 G
17360979 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17361077 original size:11 final size:11
Alignment explanation
Indices: 17361056--17361080 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
17361046 ACCATCGTTA
17361056 GAGCATCGTCG
1 GAGCATCGTCG
17361067 GAGCATCGTCG
1 GAGCATCGTCG
17361078 GAG
1 GAG
17361081 AGCCTAACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:17362016 original size:159 final size:157
Alignment explanation
Indices: 17361837--17362356 Score: 458
Period size: 159 Copynumber: 3.2 Consensus size: 157
17361827 TATGGGATGG
* *
17361837 CTTAGGTATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGAGA
1 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGCC-GACCGAGGGTTGTGGCAG-GAGA
* ** * * * *
17361901 CTAGCAGCATGTAGAGGGGGA-TCGAACGGGTCCTCGACTTGCTCATTATGCCTCTCCTGCCGGC
63 CTAGCAGCATGTAGAGGGGGATTGGGTC-GATCCTCGGCTTGCGCATTATGCCTCTCCTGCTGGC
*
17361965 CCAGTGCCCGTACGCTCATTTCGTGGGTTGA
127 TCAGTGCCCGTACGCTCATTTCGTGGGTTGA
* ** * *
17361996 CTTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGACCGAACTGAGTGTTGCTGTAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAG-CCG-ACCGAGGGTTG-TG--GCAGG-
* * * *
17362060 CCAGCAGTAGGATCGACA-GCACGCAAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTCTGCCT
60 --AG-ACTAGCA--G-CATGTA-G--AGGGGGATTGGGTCGATCCTCGGCTTGCGCATTATGCCT
* * * * * * *
17362124 CTTCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGG
116 CTCCTGCTGGCTCAGTGCCCGTACGCTCATTTCGTGGGTTGA
* * ** * *
17362166 CTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACCTTGGGTTGTGGCTGCGGGA
1 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGC-CGACCGAGGGTTGTGGCAG-GAGA
** *
17362230 CCCGCAGCATGTAGAGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCT-CTTGGC
63 CTAGCAGCATGTAGAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCTGC-TGGC
* *
17362294 TCAGTGCCCGTATGCTCCTTTCGTGGGTTGA
127 TCAGTGCCCGTACGCTCATTTCGTGGGTTGA
17362325 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17362357 ATCAGATCGG
Statistics
Matches: 283, Mismatches: 54, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
158 5 0.02
159 131 0.46
160 8 0.03
161 4 0.01
162 7 0.02
164 5 0.02
165 6 0.02
167 6 0.02
168 4 0.01
169 5 0.02
170 95 0.34
171 7 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCGACCGAGGGTTGTGGCAGGAGACTA
GCAGCATGTAGAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCTGCTGGCTCAG
TGCCCGTACGCTCATTTCGTGGGTTGA
Found at i:17362197 original size:170 final size:167
Alignment explanation
Indices: 17361938--17362514 Score: 518
Period size: 170 Copynumber: 3.5 Consensus size: 167
17361928 GGGTCCTCGA
* * * ** * * *
17361938 CTTGCTCATTATGCCTCTCCTGCCGGCCCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCC-GCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGACTTAGGC
* *
17362003 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGTGTTGCTGTAGCAGGACCAGCAGT
65 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGTGTTGCGGTAG-AGGACCAGCAG-
*
17362068 AGGATCGACAGCACGCAAGGGGGATTGGGTCGATCCTCGG
128 AGGATCGACAGCACGCAAGGGGGATTGGGTCGATCCCCGG
* *
17362108 CTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTC-TCCGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGACTTAGGC
* * * ** * * *
17362173 ATAGGGAGTTCATT-CCATGTCTAAG--C---CCCAGCTG-GACCTTG-GGTTGTGG--CTGC-G
65 ATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACTGAG-TGTTGCGGTAGAGGACCAGCAG
* * *
17362227 -GGACCCG-CAGCATGTAGAGGGGGATTGGGTCGATCCCCGG
128 AGGA-TCGACAGCACGCA-AGGGGGATTGGGTCGATCCCCGG
* * * * * *
17362267 CTTGCGCATTATGCCTCTCCTCTTGGCTCAGTGCCCGTATGCTCC-TTTCGTGGGTTGACTTAGG
1 CTTGCGCATTCTGCCTCTCCGC-TGGCTGAGCGCCCGCACGC-CCATTTCGTGGGTTGACTTAGG
* *
17362331 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCGAGTGTTGCGGTAGTAGGACCAGCA
64 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAGTGTTGCGGTAG-AGGACCAGCA
* * * *
17362395 GCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGG
127 G-AGGATCGACAGCACGCAAGGGGGATTGGGTCGATCCCCGG
* * * * * * * * *
17362437 CTTGTGTATTCTGCCTCTCCGATCGACTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGCT-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGACTTAGGC
17362502 ATACGGAGTTCAT
65 ATACGGAGTTCAT
17362515 CCCTAATCTA
Statistics
Matches: 320, Mismatches: 62, Indels: 50
0.74 0.14 0.12
Matches are distributed among these distances:
158 13 0.04
159 94 0.29
160 6 0.02
161 4 0.01
163 3 0.01
164 9 0.03
165 14 0.04
166 2 0.01
168 4 0.01
169 6 0.02
170 153 0.48
171 12 0.04
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (167 bp):
CTTGCGCATTCTGCCTCTCCGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGTGTTGCGGTAGAGGACCAGCAGAGG
ATCGACAGCACGCAAGGGGGATTGGGTCGATCCCCGG
Found at i:17362245 original size:329 final size:329
Alignment explanation
Indices: 17361735--17362514 Score: 976
Period size: 329 Copynumber: 2.4 Consensus size: 329
17361725 GAGGGTTACG
* * * * * * * * *
17361735 GCAGTAGGATCGACAGCATG-TAGGGGGACCGGGCCAATCCTTGACTTACGCATTCTACCTCTTT
1 GCAGTAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC
* * * * * * *
17361799 GACCGGCTGAGCGGCCGCATGCCCGTTTTATGGGATGGCTTAGGTATAGGGAGTTCATTCCATGT
66 GGCTGGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* *
17361864 CTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGAGACTAGCAGCATGTAGAGGGGGA-TCGAAC
131 CTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGACCAGCAGCATGTAGAGGGGGATTCGAAC
* * *
17361928 GGGTCCTCGACTTGCTCATTATGCCTCTCCTGC-CGGCCCAGTGCCCGTACGCTCATTTCGTGGG
196 -GATCCCCGACTTGCGCATTATGCCTCTCCT-CTCGGCCCAGTGCCCGTACGCTCATTTCGTGGG
*
17361992 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAA-CTGAGTGTTGCTGTAGC
259 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATC-GAGTGTTGCGGTAGC
17362056 AGGACCA
323 AGGACCA
* *
17362063 GCAGTAGGATCGACAGCACGCAAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTC
1 GCAGTAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC
* *
17362128 GGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GGCTGGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
** ** * * * * **
17362193 CTAAGCCCCAGCTGGACCTTGGGTTGTGGCTGCGGGACCCGCAGCATGTAGAGGGGGATTGGGTC
131 CTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGACCAGCAGCATGTAGAGGGGGATTCGAAC
* * * * *
17362258 GATCCCCGGCTTGCGCATTATGCCTCTCCTCTTGGCTCAGTGCCCGTATGCTCCTTTCGTGGGTT
196 GATCCCCGACTTGCGCATTATGCCTCTCCTCTCGGCCCAGTGCCCGTACGCTCATTTCGTGGGTT
* * * *
17362323 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGTGTTGCGGTAGTAGG
261 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGTGTTGCGGTAGCAGG
17362388 ACCA
326 ACCA
* * * * * *
17362392 GCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGTGTATTCTGCCTC-TC
1 GCAGTAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC
* * * * * *
17362456 CGATCGACTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
66 GGCT-GGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
17362515 CCCTAATCTA
Statistics
Matches: 386, Mismatches: 61, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
328 24 0.06
329 358 0.93
330 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (329 bp):
GCAGTAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC
GGCTGGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGACCAGCAGCATGTAGAGGGGGATTCGAAC
GATCCCCGACTTGCGCATTATGCCTCTCCTCTCGGCCCAGTGCCCGTACGCTCATTTCGTGGGTT
GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGTGTTGCGGTAGCAGG
ACCA
Found at i:17362390 original size:159 final size:159
Alignment explanation
Indices: 17362085--17362397 Score: 357
Period size: 159 Copynumber: 2.0 Consensus size: 159
17362075 ACAGCACGCA
* * * *
17362085 AGGGGGATTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCGCACGC
1 AGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCCGCTGGCTCAGCGCCCGCACGC
* * * * **
17362150 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCTTGG
66 CCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATGGACCGAGG
* * *
17362215 GTTGTGGCTGCGGGACCCGCAGCATGTAG
131 GTTGCGGCTGCAGGACCAGCAGCATGTAG
* * * *
17362244 AGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGCCTC-TCCTCTTGGCTCAGTGCCCGTATG
1 AGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCCGC-TGGCTCAGCGCCCGCACG
* *
17362308 CTCC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATC
65 C-CCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGAT-GGACC
* *
17362370 GAGTGTTGCGG-TAGTAGGACCAGCAGCA
127 GAGGGTTGCGGCT-GCAGGACCAGCAGCA
17362398 GGATCGACAG
Statistics
Matches: 128, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
158 8 0.06
159 115 0.90
160 5 0.04
ACGTcount: A:0.15, C:0.27, G:0.32, T:0.26
Consensus pattern (159 bp):
AGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCCGCTGGCTCAGCGCCCGCACGC
CCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATGGACCGAGG
GTTGCGGCTGCAGGACCAGCAGCATGTAG
Found at i:17363040 original size:513 final size:513
Alignment explanation
Indices: 17362061--17363040 Score: 1439
Period size: 513 Copynumber: 1.9 Consensus size: 513
17362051 GTAGCAGGAC
* * ** * *
17362061 CAGCAGTAGGATCGACAGCACGCAAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCT
1 CAGCAGCAGCATCGACAGCACGCAAGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCT
* * *
17362126 TCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
66 CCGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* * * *
17362191 GTCTAAGCCCCAGCTGGACCTTGGGTTGTGGCTGCGGGACCCGCAGCATGTAGAGGGGGATTGGG
131 GTCTAAACCCCAGCTGGACCTTGGGTTGTGGCTACGGGACCCGCAGCACGCAGAGGGGGATTGGG
* ** *
17362256 TCGATCCCCGGCTTGCGCATTATGCCTCTCCTCTTGGCTCAGTGCCCGTATGCTCCTTTCGTGGG
196 TCGATCCCCGGCTTGCGCATTATACCTCTCCTCTCCGCTCAGTGCCCGTACGCTCCTTTCGTGGG
* * * * *
17362321 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGTGTTGCGGTAGTA
261 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGTGTTACGGTAGCA
* * ** *
17362386 GGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGTGTATTCTGC
326 GGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACGCATTCTGC
** *
17362451 CTCTCCGATCGACTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATC
391 CTCTCCGATCGACTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATC
*
17362516 CCTAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTG
456 CATAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTG
* * *
17362574 CAGCAGCAGCATCGACAGCATGCAGGGGGGACCGGG-CTGATCCCCAGCTTGCGCATTCTGTCTC
1 CAGCAGCAGCATCGACAGCACGCAAGGGGGACCGGGTC-GATCCCCAGCTTGCGCATTCTGCCTC
*
17362638 TCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
65 TCCGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
*
17362703 TGTCTAAACCCCAGCTGGACCTTGGGTTGTGGCTACGGGA-CTGACAGCACGCAGAGGGGGATTG
130 TGTCTAAACCCCAGCTGGACCTTGGGTTGTGGCTACGGGACCCG-CAGCACGCAGAGGGGGATTG
* * *
17362767 GGTCGATCCTCGGCTTGCGCATTATACCTCTCTTGC-CCGCTCAGTGCCCGTACGCTCGTTTCGT
194 GGTCGATCCCCGGCTTGCGCATTATACCTCTCCT-CTCCGCTCAGTGCCCGTACGCTCCTTTCGT
** * *
17362831 GGGTTGACTTTTGCATACGGAGTTCATTCCCAATCTAAGATCAGATTGGACCAAGTGTTATGGTA
258 GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGTGTTACGGTA
* *
17362896 GCAGGACTAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCTCGGCTTACGCATTC
323 GCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACGCATTC
** *
17362961 TGCCTCTCCGA-CTGGTTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTT
388 TGCCTCTCCGATC-GACTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTT
*
17363025 CATTCCAT-GTCTAAGC
452 CA-TCCATAATCTAAGC
17363041 CCCAGCCAGA
Statistics
Matches: 413, Mismatches: 49, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
512 4 0.01
513 404 0.98
514 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (513 bp):
CAGCAGCAGCATCGACAGCACGCAAGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCT
CCGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
GTCTAAACCCCAGCTGGACCTTGGGTTGTGGCTACGGGACCCGCAGCACGCAGAGGGGGATTGGG
TCGATCCCCGGCTTGCGCATTATACCTCTCCTCTCCGCTCAGTGCCCGTACGCTCCTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGTGTTACGGTAGCA
GGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACGCATTCTGC
CTCTCCGATCGACTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATC
CATAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTG
Found at i:17363236 original size:26 final size:26
Alignment explanation
Indices: 17363206--17363258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17363196 GTTGACTTAG
17363206 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17363232 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17363258 G
1 G
17363259 ATTGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17363950 original size:25 final size:26
Alignment explanation
Indices: 17363915--17363966 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17363905 GTTGACTTAG
17363915 GCATACAGAG-TCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17363940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17363966 G
1 G
17363967 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17364133 original size:26 final size:26
Alignment explanation
Indices: 17364097--17364149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17364087 GTTGCCTTAG
*
17364097 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
17364123 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17364149 G
1 G
17364150 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17364171 original size:183 final size:183
Alignment explanation
Indices: 17363864--17364295 Score: 501
Period size: 184 Copynumber: 2.4 Consensus size: 183
17363854 CTCCCAACTG
* * * * * *
17363864 GCCTCTCCGATCGGCTAAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTCAT
1 GCCTCTCCGACCGGCTGAACGCTCGCACGCACGTTTCGTGGGTTGACTTAGGCATACGGAGTCAT
* *
17363929 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGTCGCAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCAAGGGTTGTCGCAA
* * *
17363994 CAGGATCAGTAGCATACA-GGGGGACCGGGCAGATCCCTGGCTTATGCATTCT
131 CACGATCAGTAGCACACAGGGGGGACCGGGCAGATCCCTGGCTTACGCATTCT
* *
17364046 GCCTCTCCGACCGGCTGAACGCTCGCACGCCCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGGCTGAACGCTCGCACGCACGTTTCGTGGGTTGACTTAGGCATACGGAG-TCA
** ** * *
17364111 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGTGGTA
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCAAGGGTTGTCGCA
* ** * * * *
17364176 ACACGATCGGTAGCACGGAGGGGGGACTGGGCTGATCCTTGGCTTGCGCATTCT
130 ACACGATCAGTAGCACACAGGGGGGACCGGGCAGATCCCTGGCTTACGCATTCT
* * * * * * * *
17364230 ACCTTTTCGACCGGCGGAGCAC-CT-GCACGCATGTTTCATGGGTTGGCTTAGGCATAGGGAGCT
1 GCCTCTCCGACCGGCTGA--ACGCTCGCACGCACGTTTCGTGGGTTGACTTAGGCATACGGAG-T
17364293 CAT
63 CAT
17364296 TCCATGTCTA
Statistics
Matches: 211, Mismatches: 35, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
182 54 0.26
183 74 0.35
184 79 0.37
185 2 0.01
186 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (183 bp):
GCCTCTCCGACCGGCTGAACGCTCGCACGCACGTTTCGTGGGTTGACTTAGGCATACGGAGTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCAAGGGTTGTCGCAA
CACGATCAGTAGCACACAGGGGGGACCGGGCAGATCCCTGGCTTACGCATTCT
Found at i:17364633 original size:25 final size:26
Alignment explanation
Indices: 17364598--17364649 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
17364588 GTTGGCTTAG
*
17364598 GCATACGGAGTTC-TT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17364623 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17364649 G
1 G
17364650 ATCGGAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 12 0.50
26 9 0.38
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17366571 original size:26 final size:26
Alignment explanation
Indices: 17366535--17366587 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17366525 GTTGACATAG
*
17366535 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17366561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17366587 G
1 G
17366588 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17366990 original size:159 final size:156
Alignment explanation
Indices: 17366561--17367062 Score: 532
Period size: 159 Copynumber: 3.2 Consensus size: 156
17366551 CCCAGTCTAA
** * *
17366561 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGATCGAGGGTTACGATAGCAGGATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACA-GATCGAGGGTTGCGACAGCAGGATCGA-C
* * * *
17366625 AACATACAGGGGGGACC-GGACCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCA
64 AGCACACAGGGGGGACCAGG-CCGATTCCCGGCTTGCGCATTCTGCCTCTTCGGCC-GCTGAGCA
* * *
17366689 CCCGCACACCCATTTCATGGGTTGGCTTAG
127 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
* ** ** * * *
17366719 GCATAGGGAGTTCATT-CCAGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGATCGGA-
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAAACAGATCGAGGGTTGCGACAGCAGGATC-GAC
* * * * *
17366782 AGCACACAGAGGGGGACCAGGCCGA-TCCCTGTCTTGCGTATTATGCCTCTTCGGCCAGCTCAGT
64 AGCACACAG-GGGGGACCAGGCCGATTCCC-GGCTTGCGCATTCTGCCTCTTCGGCC-GCTGAGC
* *
17366846 ACCCGCACACTCGTTTCGTGGGTTGACTTAT
126 ACCCGCACACTCGTTTCGTGGGTTGGCTTAG
17366877 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGA-CTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAAC-AGATC-GAGGGTTGCGACAGCAGGATCGAC
* *
17366941 AGCACGCAGGGGGGAACCAGGCCGATTCCCGGCTTGCGCATTCTGCCTC-TCTGACCGACTGAGC
64 AGCACACAGGGGGG-ACCAGGCCGATTCCCGGCTTGCGCATTCTGCCTCTTC-GGCCG-CTGAGC
* * *
17367005 GCCCGCACGCTCGTTTCGTAGGTTGGCTTAG
126 ACCCGCACACTCGTTTCGTGGGTTGGCTTAG
**
17367036 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
17367063 CATATGGAGT
Statistics
Matches: 283, Mismatches: 47, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
157 40 0.14
158 113 0.40
159 126 0.45
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACAGATCGAGGGTTGCGACAGCAGGATCGACAG
CACACAGGGGGGACCAGGCCGATTCCCGGCTTGCGCATTCTGCCTCTTCGGCCGCTGAGCACCCG
CACACTCGTTTCGTGGGTTGGCTTAG
Found at i:17367085 original size:26 final size:26
Alignment explanation
Indices: 17367036--17367086 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17367026 GTTGGCTTAG
**
17367036 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17367062 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17367087 TGATTTTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17368154 original size:160 final size:160
Alignment explanation
Indices: 17367781--17368281 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 160
17367771 CCCAGTCTAA
* * * *
17367781 GCATACGAAGTTCATTCCTAGTCTAAGATCAGA-CAGGATCGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCA-GATCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * * *
17367845 AGCACGTAG-GGGGGATCGAGCCGATCCTCGGA-TTGTTCATTCTGCCTCTCCGGTCAGCT-GAG
65 AGCACGCAGAGGGGGATCGGGCCGATCC-CAGACTTGTGCATTCTGCCTCTTCGGTCGGCTAGTG
* *
17367907 CGCCCGCACGCCCGTTTTGTGGGTTGGCTTAG
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
17367939 GCATAGGGAGTTCATT-CCATGTTTAAGCCCCAGCCAGA-CTGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCAAACCAGATC-GAGGGTTGCGGCAGCAGGATC-G
* * *
17368001 ACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGTGCATT-TGCCTCTTCGGTCGGCTCAG
63 ATAGCACGCAGAGGGGGATCGGGCCGATCCCAGACTTGTGCATTCTGCCTCTTCGGTCGGCT-AG
* * **
17368065 TGCGCCCGTACGCTCATTTCGTGGGTTGAATTAG
127 TGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17368099 GCATACGAAATTCATTCCCAGTCTAAGATCAAACCAGATCGGGGGTTGCGGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * *
17368164 GCACACAGA-GGGGATC-GGTCGATCTCAG-CTTATGCATTCTGCCTC-TCCGACTGGCTGAGT-
66 GCACGCAGAGGGGGATCGGGCCGATCCCAGACTTGTGCATTCTGCCTCTTCGGTC-GGCT-AGTG
17368224 -GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17368255 GCATACGGAGTTGATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
17368282 CATACGGAGT
Statistics
Matches: 275, Mismatches: 54, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
155 3 0.01
156 47 0.17
157 17 0.06
158 89 0.32
159 32 0.12
160 82 0.30
161 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (160 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGAGGGGGATCGGGCCGATCCCAGACTTGTGCATTCTGCCTCTTCGGTCGGCTAGTGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17368291 original size:26 final size:26
Alignment explanation
Indices: 17368255--17368307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17368245 GTTGGCTTAG
*
17368255 GCATACGGAGTTGATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17368281 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17368307 G
1 G
17368308 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17369364 original size:26 final size:26
Alignment explanation
Indices: 17369334--17369386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17369324 GTTGACTTAG
17369334 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
17369360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17369386 G
1 G
17369387 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17370054 original size:317 final size:315
Alignment explanation
Indices: 17369360--17370105 Score: 822
Period size: 317 Copynumber: 2.4 Consensus size: 315
17369350 CCCAGTCTAA
* * ** *
17369360 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-GATCAAGGGTTGCGGCAGTAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGATCGA-GG-TACGGCAACAGGATCGAC
* * * *
17369424 AGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGTCTCTCCGGCTGACTTAGCAC
64 AGCACGCA-GGGGGACCGGGTCAATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGACTGAGCAC
* ** ** *
17369489 CCGCACGGCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
128 CCGCACGACCGTTTCATGGGTCAGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCG
* * ** * * **
17369554 GATCGAGGGTTGTGGCAGCGGGATCAGCAGCACGTAGAGGGGGATTGGGTCGATCCTCGGCTTGT
193 GACCGAGGGTTGTGGCAGCGGGATCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTAC
* *
17369619 GCATTAAGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTCCATGGGTTGACCTAG
258 GCATTAAGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTCAATGGGTTGACCTAG
* * * * *
17369677 GCATATGGAGTTCATTCCCAGTCTAAGGTCGGACCGA-ACCGAGAG-A-TGCAATAGCAGGATCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGATCGAG-GTACGGC-A-A-CAGGATCG
** * * * *
17369739 GTAGGACGCAGGAGGGACC-GGCCTAATCCCCGACTTGCGCATTCTGCCTCTCTGGCTGACTGAG
62 ACAGCACGCAGG-GGGACCGGGTC-AATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGACTGAG
** * * * *
17369803 TGCCCGCACGACCGTTTCATGGGTCAGTTTAGGCATAGGGAGTTCAGTCTATGTCTAAGCTCCTG
125 CACCCGCACGACCGTTTCATGGGTCAGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAG
* * * *
17369868 TCGGACCTAGGGTTGTGGCAGTGGGA-CAGGCAGCACGCAGAGGGGGACCGTGTCGATCCCCAGC
190 CCGGACCGAGGGTTGTGGCAGCGGGATCA-GCAGCACGCAGAGGGGGACCGGGTCGATCCCCAGC
* * * * * *
17369932 TTACGCATTATGCCTCTCCGGCTGGCTCAGCGCCTGCACGCTCATTTAATGGGTTGACTTAG
254 TTACGCATTAAGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTCAATGGGTTGACCTAG
* *
17369994 GCATACGAAGTTCATTCCCAGTCTAAGATCAGA-TGAGATCGATGGTCACGGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGATCGA-GGT-ACGGCAACAGGATCGAC
* * *
17370058 CGCACGCAGGGGGATCGGGTCAGTCCCTGACTTGCGCATTCTGCCTCT
64 AGCACGCAGGGGGACCGGGTCAATCCCTGACTTGCGCATTCTGCCTCT
17370106 TCAGCCGGTT
Statistics
Matches: 348, Mismatches: 67, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
314 2 0.01
315 1 0.00
316 40 0.11
317 299 0.86
318 2 0.01
319 2 0.01
320 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGATCGAGGTACGGCAACAGGATCGACAG
CACGCAGGGGGACCGGGTCAATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGACTGAGCACCCG
CACGACCGTTTCATGGGTCAGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCGGAC
CGAGGGTTGTGGCAGCGGGATCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGCA
TTAAGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTCAATGGGTTGACCTAG
Found at i:17370210 original size:157 final size:158
Alignment explanation
Indices: 17369898--17370652 Score: 483
Period size: 157 Copynumber: 4.8 Consensus size: 158
17369888 GTGGGACAGG
* * * * * * * * * *
17369898 CAGCACGCAGAGGGGGACCGTGTCGATCC-CCAGCTTACGCATTATGCCTCTCCGGCTGGCTCAG
1 CAGCACGCAG-GGGGGATCGGGTCGATCCTCGA-CTTGCACATTCTACCTCTCCAGCCGGCTGAG
* * *
17369962 CGCCTGCACGCTCATTTAATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
64 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAGA
* * * *
17370027 TGAGATCGATGGTCACGGCAACAGGATCGA
129 TCAGATCAAGGGTCACGACAACAGGATCGA
* * * * *
17370057 CCGCACGCA-GGGGGATCGGGTC-AGTCC-CTGACTTGCGCATTCTGCCTCTTCAGCCGGTTGAG
1 CAGCACGCAGGGGGGATCGGGTCGA-TCCTC-GACTTGCACATTCTACCTCTCCAGCCGGCTGAG
* * *
17370119 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-AGATTTTATCCCCAGTCTAAGAT-AG
64 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGATCA-
*** **
17370182 GATCAGATCAAGGGTTGTGACAGTAGGATCGA
127 GATCAGATCAAGGGTCACGACAACAGGATCGA
* * *
17370214 TAGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGCACATTCTACCTCTCCAGCCGGCTGAGCG
1 CAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTGCACATTCTACCTCTCCAGCCGGCTGAGCG
* * * * **
17370279 CCCGCACGC-CTATTTCAATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCCCAG
66 CCCGCACGCTC-ATTTC-ATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGATCAG
* * * * *** * * * *
17370342 CT-GGACCGAGGGTTGTGGCAGCGGGACCGA
128 ATCAGATCAAGGGTCACGACAACAGGATCGA
* * * * * ** * * * * *
17370372 TAGCACGTAGAGAGGGA-CTGGTCGATCCTCG-CTTGCGCATAATGCATCTAC-GACCGGCTCAA
1 CAGCACGCAG-GGGGGATCGGGTCGATCCTCGACTTGCACATTCTACCTCTCCAG-CCGGCTGAG
* *
17370434 CGCCCGCACGCTCATTTCATTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGG
64 CGCCCGCACGCTCATTTCA-TGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAG
* * * * *** ** **
17370499 ACCGGACCGAGGGTTGTGGTAGTAGGATCGA
128 ATCAGATCAAGGGTCACGACAACAGGATCGA
* * ** * * ** *
17370530 CAGCACGCAGGGGGGATCGGGTCGATCCTTGAATTTGTTCATTCTGCCTTTCCAATCGACTGAGC
1 CAGCACGCAGGGGGGATCGGGTCGATCCTCG-ACTTGCACATTCTACCTCTCCAGCCGGCTGAGC
* * * * * *
17370595 GCCTGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCA-CTCCATGTCTAAG
65 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAG
17370653 CCCCTGCCGG
Statistics
Matches: 474, Mismatches: 99, Indels: 46
0.77 0.16 0.07
Matches are distributed among these distances:
156 5 0.01
157 198 0.42
158 159 0.34
159 77 0.16
160 35 0.07
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTGCACATTCTACCTCTCCAGCCGGCTGAGCG
CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAGATC
AGATCAAGGGTCACGACAACAGGATCGA
Found at i:17370294 original size:158 final size:158
Alignment explanation
Indices: 17369360--17370652 Score: 729
Period size: 158 Copynumber: 8.2 Consensus size: 158
17369350 CCCAGTCTAA
* * * * * * * *
17369360 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGTAGGATCAACA
1 GCATACGAAGTTCATTCCCAGTCTAAGAT-AGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
17369425 GCACGCAGGGGGGACCGGGTCGATCC-CTGGCTTGCGCATTCTGTCTCTCCGGCTGACTTAGCAC
65 GCACGCAGGGGGGATCGGGTCGATCCTC-GGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGC
* ** *
17369489 CCGCACGGC-CGTTT-TGTGGGTTGGCTTAG
129 CCGCAC-GCTCATTTCAATGGGTTGACTTAG
* * ** * * * *
17369518 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGCGGGATC-A
1 GCATACGAAGTTCATTCCCA-GTCTAAG--ATAGATCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * *
17369580 GCAGCACGTAGAGGGGGATTGGGTCGATCCTCGGCTTGTGCATTAAGCCTCTCC-GACCGGCTCA
63 -CAGCACGCAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAG-CCGGCTCA
* * *
17369644 GCGCCCGCACGCTC-GTTCCATGGGTTGACCTAG
125 GCGCCCGCACGCTCATTTCAATGGGTTGACTTAG
* * * * * * * **** **
17369677 GCATATGGAGTTCATTCCCAGTCTAAGGTCGGA-CCGAACCGAGAGATGCAATAGCAGGATCGGT
1 GCATACGAAGTTCATTCCCAGTCTAAGAT-AGATCAG-ACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * ** * * * *
17369741 AGGACGCAGGAGGGA-CCGGCCTAATCCCCGACTTGCGCATTCTGCCTCTCTGGCTGACTGAGTG
64 AGCACGCAGGGGGGATCGGGTC-GATCCTCGGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCG
* * *
17369805 CCCGCACGAC-CGTTTC-ATGGG-TCAGTTTAG
128 CCCGCACG-CTCATTTCAATGGGTTGA-CTTAG
* * * * * * * * **
17369835 GCATAGGGAGTTCAGT-CTATGTCTAAGCTCCTG-TCGGACCTAGGGTTGTGGCAGTGGGA-CAG
1 GCATACGAAGTTCATTCCCA-GTCTAAGAT--AGATCAGACCGAGGGTTGTGGCAGCAGGATC-G
* * * * * * * *
17369897 GCAGCACGCAGAGGGGGACCGTGTCGATCCCCAGCTTACGCATTATGCCTCTCCGGCTGGCTCAG
62 ACAGCACGCAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAGCCGGCTCAG
*
17369962 CGCCTGCACGCTCATTT-AATGGGTTGACTTAG
126 CGCCCGCACGCTCATTTCAATGGGTTGACTTAG
* * * *** * *
17369994 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATGAGATCGATGGTCACGGCAACAGGATCGACC
1 GCATACGAAGTTCATTCCCAGTCTAAGAT-AGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
17370059 GCACGCA-GGGGGATCGGGTC-AGTCC-CTGACTTGCGCATTCTGCCTCTTCAGCCGGTTGAGCG
65 GCACGCAGGGGGGATCGGGTCGA-TCCTC-GGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCG
*
17370121 CCCGCACGCTCATTTC-GTGGGTTGACTTAG
128 CCCGCACGCTCATTTCAATGGGTTGACTTAG
* * * * * * * *
17370151 GCATAC-AGATTTTATCCCCAGTCTAAGATAGGATCAGATCAAGGGTTGTGACAGTAGGATCGAT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATA-GATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
17370215 AGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGCACATTCTACCTCTCCAGCCGGCTGAGCGC
64 AGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGC
*
17370280 CCGCACGC-CTATTTCAATGGGTTGGCTTAG
129 CCGCACGCTC-ATTTCAATGGGTTGACTTAG
* * ** * * * * *
17370310 GCATAGGGAGTTCATT-CCATGTCTAAGCCCAGCT-GGACCGAGGGTTGTGGCAGCGGGACCGAT
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATAGATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
17370373 AGCACGTAGAGAGGGA-CTGGTCGATCCTC-GCTTGCGCATAATGCATCTAC-GACCGGCTCAAC
64 AGCACGCAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAG-CCGGCTCAGC
*
17370435 GCCCGCACGCTCATTTCATTGGGTTGACTTAG
127 GCCCGCACGCTCATTTCAATGGGTTGACTTAG
* * * * *
17370467 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGAT-AGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* ** ** * * ** * *
17370532 GCACGCAGGGGGGATCGGGTCGATCCTTGAATTTGTTCATTCTGCCTTTCCAATCGACTGAGCGC
65 GCACGCAGGGGGGATCGGGTCGATCCTCG-GCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGC
* * * *
17370597 CTGCACGCTCGTTTC-ATTGGTTGGCTTAG
129 CCGCACGCTCATTTCAATGGGTTGACTTAG
* *
17370626 GCATACGGAGTTCACT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
17370653 CCCCTGCCGG
Statistics
Matches: 869, Mismatches: 211, Indels: 109
0.73 0.18 0.09
Matches are distributed among these distances:
156 5 0.01
157 211 0.24
158 318 0.37
159 289 0.33
160 46 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCGCCC
GCACGCTCATTTCAATGGGTTGACTTAG
Found at i:17373347 original size:25 final size:26
Alignment explanation
Indices: 17373319--17373370 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17373309 GTTGACATAG
17373319 GCATATGGAGTTCA-TCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
* *
17373344 GCATATGGATTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
17373370 G
1 G
17373371 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:17373789 original size:158 final size:157
Alignment explanation
Indices: 17373344--17373833 Score: 509
Period size: 158 Copynumber: 3.1 Consensus size: 157
17373334 CCCAATCTAA
* * * *
17373344 GCATATGGATTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGTGGTAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC-GACCGAGGGTTGTGGCAGTAGGATCGGC
* * * * * * * *
17373408 AGCACGTAAGGGGGATCGGGCCGATCCCC-CCTTACGCATTCTGCCTCTCCGATCGGCTGAGCAC
64 AGCACATAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
17373472 CCGTACACCCATTTTGTGGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * ** * * *
17373501 GCATAGGGACTTCATT-CCATGTCTAAGCCCCAGTCAGATTGAGGGTTGTGGCAATGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGACCGAGGGTTGTGGCAGTAGGATCGGC
* * * * * *
17373565 AGCACACAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCG
64 AGCACATAG-GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * *
17373630 CCCGCACGCTTATTTCATGGGTTGACTTAT
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
17373660 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGTGGCAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGTGGCAGTAGGATCGGCA
* **
17373725 GCACATAGGGGGGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGATTGAGCGCC
65 GCACATAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
17373790 CGCACGCTCATTCCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
17373818 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
17373834 TCATGTCTAA
Statistics
Matches: 264, Mismatches: 62, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
156 3 0.01
157 48 0.18
158 112 0.42
159 98 0.37
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGTGGCAGTAGGATCGGCAG
CACATAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:17374570 original size:26 final size:26
Alignment explanation
Indices: 17374540--17374592 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17374530 GTTGACTTAG
17374540 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** * *
17374566 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17374592 G
1 G
17374593 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17375077 original size:26 final size:26
Alignment explanation
Indices: 17375042--17375094 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17375032 GTTGGCTTAG
17375042 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17375068 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17375094 G
1 G
17375095 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17376295 original size:26 final size:26
Alignment explanation
Indices: 17376265--17376317 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17376255 GTTGGCTTAG
17376265 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17376291 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17376317 G
1 G
17376318 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17376960 original size:159 final size:157
Alignment explanation
Indices: 17376721--17377159 Score: 447
Period size: 159 Copynumber: 2.8 Consensus size: 157
17376711 GAGGATCGGT
* * * *
17376721 AGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCT-TTCCGACCGGCTGAGCG
1 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTT-CGACCGGCTAAGCG
* * * *
17376785 CCCGTACACCCATTTCGTGGGTTGGCTTAGTCATA-GCGAGTTCATTCCATGTCTAAGCCCCAAC
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGTCATACG-GAGTTCATTCCATGTCTAAGCCCCAAC
** * *
17376849 AGGCCCGACGGTTGTGCCAGCGGGACCGAC
129 A-AACCGACGGCTGTGCCAGCAGGACCGAC
* * *
17376879 AGCACGTAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCG
1 AGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTAAGCG
* * * ****
17376944 CCTGCACGCTCGTTTCGTGGGTTGACTTA-TGCATACGGAGCTCATTCCCA-GTCTAAGATTGGA
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGT-CATACGGAGTTCATT-CCATGTCTAAG-CCCCA
* * * *
17377007 CCAAACCGAGGGCTGTGGCAGCAGGATCGAC
127 ACAAACCGACGGCTGTGCCAGCAGGACCGAC
* * * * * ** *
17377038 AGCACGTAGGGGGGGACTGGGTCGATCCCCAGCTTGCACA-TATGCCTCTCCGGTCGGCTAAACG
1 AGCACGTA-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTAAGCG
* *
17377102 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGC
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGC
17377160 ATACAGAGTT
Statistics
Matches: 230, Mismatches: 42, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 77 0.33
159 141 0.61
160 10 0.04
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (157 bp):
AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTAAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCCCCAACAA
ACCGACGGCTGTGCCAGCAGGACCGAC
Found at i:17377181 original size:26 final size:26
Alignment explanation
Indices: 17377132--17377184 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17377122 GTTGGCTTAG
* **
17377132 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCGAGTCTAA
*
17377158 GCATACAGAGTTCATTTCGAGTCTAA
1 GCATACAGAGTTCATTCCGAGTCTAA
17377184 G
1 G
17377185 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCGAGTCTAA
Found at i:17377283 original size:11 final size:11
Alignment explanation
Indices: 17377262--17377286 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
17377252 ACCATCGTTA
17377262 GAGCATCGTCG
1 GAGCATCGTCG
17377273 GAGCATCGTCG
1 GAGCATCGTCG
17377284 GAG
1 GAG
17377287 AGCCTAACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:17377899 original size:26 final size:26
Alignment explanation
Indices: 17377863--17377915 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17377853 GTTGACTTAG
*
17377863 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17377889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17377915 G
1 G
17377916 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17378216 original size:159 final size:156
Alignment explanation
Indices: 17378034--17378561 Score: 418
Period size: 159 Copynumber: 3.2 Consensus size: 156
17378024 ACCCGTTTTA
* * *
17378034 TGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGATGTGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCCGGACCGAGGGATGTGGC
** *
17378099 AGTGAGACCAGCAGCATGTAGAGGGGGATCGAACGGGTCCCTGACTTGCTCATTATGCCTCTCCT
65 AGTGAGACC-GCAGCATGTAGAGGGGGATCGGTC-GATCCCTGACTTGCTCATTATGCCTCTCCT
* *
17378164 GTCGGCCCAGTGCCCGTACGCTTATTTCG
128 GTCGGCTCAGTGCCCGTACGCTCATTTCG
* ** *
17378193 TGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGCGTTGCTG
1 TGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAG-CCGGACCGAG-G--GATG
* * * * *
17378257 TAGCAGGACCAGTAGCAGGATCGACAGCACGTA-AGGGGGATTGGGTCGATCCCCGACTTGCGCA
61 T----GG--CAGT-G-A-GACCG-CAGCATGTAGAGGGGGA-TCGGTCGATCCCTGACTTGCTCA
* * * * * *
17378321 TTCTGCCTCTCC-GACTGGCTGAGCGCCCGCACGCCCATTTCG
115 TTATGCCTCTCCTGTC-GGCTCAGTGCCCGTACGCTCATTTCG
* * * * * ** * *
17378363 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGCACCTTGGGTTGTGGT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCCGGACCGAGGGATGTGGC
* * * *
17378428 TGTGGGACCCGCAGCATGCAGAGGGGGATCGGGTCGAT-CCTCGGCTTGCGT-ATTATGCCTCTC
65 AGTGAGA-CCGCAGCATGTAGAGGGGGATC-GGTCGATCCCT-GACTTGC-TCATTATGCCTCTC
* * * * *
17378491 CTCTCAGCTCAGTGCACGTATGCTCCTTTCG
126 CTGTCGGCTCAGTGCCCGTACGCTCATTTCG
17378522 TGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAG
1 TGGGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAAG
17378562 ATCAGATCGG
Statistics
Matches: 286, Mismatches: 57, Indels: 52
0.72 0.14 0.13
Matches are distributed among these distances:
158 15 0.05
159 129 0.45
160 8 0.03
161 2 0.01
162 4 0.01
163 2 0.01
166 2 0.01
167 4 0.01
168 4 0.01
169 7 0.02
170 93 0.33
171 16 0.06
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (156 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAGCCGGACCGAGGGATGTGGCA
GTGAGACCGCAGCATGTAGAGGGGGATCGGTCGATCCCTGACTTGCTCATTATGCCTCTCCTGTC
GGCTCAGTGCCCGTACGCTCATTTCG
Found at i:17378402 original size:170 final size:168
Alignment explanation
Indices: 17378187--17379343 Score: 601
Period size: 170 Copynumber: 6.8 Consensus size: 168
17378177 CCGTACGCTT
* *
17378187 ATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGT
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGCGT
* * *
17378252 TGCTGTAGCAGGACCAGTAGCAGGATCGACAGCACGTAAGGGGGATTGGGTCGATCCCCGACTTG
65 TG-TGTAGCAGGACCAGTAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTG
17378317 CGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCC
129 CGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCC
* ** * * ** *
17378357 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGCACCTTGGG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGATC-AGACCGGACCGAGCG
* ** * * *
17378421 TTGTGGTTGTGGGACC---CGCA-G--C-A-TGCA-G--AGGGGGATCGGGTCGATCCTCGGCTT
64 TTGT-GTAGCAGGACCAGTAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTT
* * * * * * * * *
17378475 GCGTATTATGCCTCTCC-TCTCAGCTCAGTGCACGTATGCTCC
128 GCGCATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACGC-CC
* * * *
17378517 -TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGATCGAGTGT
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGCGT
* * * * *
17378581 TACG-GTAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCTCGGCTT
65 T--GTGTAGCAGGACCAGTAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTT
* * * * *
17378645 GTGCATTCTGCCTCTCTGA-TCGACTGAGCACCCGCACGCTC
128 GCGCATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACGCCC
* * * * *** *
17378686 ATTTCATGGGTTGGCTTAGGCATACGGAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTA
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAAG-AT-CAGA--CCGGACCGA
* * * * * *
17378751 GTC-TAAGAT-CAG-ATTGGATCGAGGGTTGCAGCAGCAGCATCGACAGCAAGCAAGGGGGACCA
61 G-CGT-TG-TGTAGCA--GGA-CCA--G-T--AGCAG--G-ATCGACAGCACGCAAGGGGGATCG
* * * * *
17378813 GG-CTGATCCCCGGCTTGCACATTCTGTCTCTCCGACCGGTTGAGCGCCCGCACACCC
112 GGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCC
* * * * *
17378870 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-CTGGA-C---C
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGA--TCAGACCGGACCGAGC
* * * * * * * *
17378929 -TTGGGTTG-TGG--C--TA-CGGGA-CTGACAGCACGTAGAGGGGGATTGGGTCAATCCTCGGC
63 GTTGTGTAGCAGGACCAGTAGCAGGATC-GACAGCACGCA-AGGGGGATCGGGTCGATCCCCGGC
* * ** * * * * *
17378986 TTGCGCATTATACCTCTTTTGCCT-GCTCAGTGCCCGTACGCTC
126 TTGCGCATTCTGCCTC-TCCGACTGGCTGAGCGCCCGCACGCCC
* * ** * * * *
17379029 ATTTCATGGGTTGACTTTTGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGTGT
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGCGT
* * * * * * *
17379094 TGTGGTAGCAGGACTAGCAGCAGGATCGACAGCATGCAAGGGGGA-CTGAGCCAATCCCCGACTT
65 TGT-GTAGCAGGACCAGTAGCAGGATCGACAGCACGCAAGGGGGATC-GGGTCGATCCCCGGCTT
* * * * * *
17379158 ACGCATTCTGCCTATTCGACTGGCTGAGCACCCGCACACTC
128 GCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCC
* ** *
17379199 ATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGCG
* * * *
17379263 TTGTGGTAGCAGGATC-GATAGCGGGATCGACAGCACGCAGAGGGGGATCGGG-CTAATCCCTGG
64 TTGT-GTAGCAGGACCAG-TAGCAGGATCGACAGCACGCA-AGGGGGATCGGGTC-GATCCCCGG
* *
17379326 CTTGCACATTATGCCTCT
125 CTTGCGCATTCTGCCTCT
17379344 TCGGCTTGTG
Statistics
Matches: 725, Mismatches: 186, Indels: 151
0.68 0.18 0.14
Matches are distributed among these distances:
157 1 0.00
158 17 0.02
159 186 0.26
160 13 0.02
161 4 0.01
162 7 0.01
163 2 0.00
164 5 0.01
165 4 0.01
166 4 0.01
167 6 0.01
168 1 0.00
169 14 0.02
170 268 0.37
171 51 0.07
172 8 0.01
173 2 0.00
174 10 0.01
175 5 0.01
176 2 0.00
178 1 0.00
179 1 0.00
181 5 0.01
182 1 0.00
183 8 0.01
184 99 0.14
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (168 bp):
ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGCGTT
GTGTAGCAGGACCAGTAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCG
CATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCC
Found at i:17378544 original size:329 final size:329
Alignment explanation
Indices: 17377939--17378732 Score: 995
Period size: 329 Copynumber: 2.4 Consensus size: 329
17377929 GAGGGTTACG
* * * * * *
17377939 GCAGCAAGATCGACAGCACGTAGGGGGGACCAGGCCGATCCTTGACTTACGCATTCTGCCTCTTT
1 GCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCT
* * * * *
17378004 GATCGGCTGAGCGCCCACACACCCGTTTTATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGT
66 GATCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* *
17378069 CTAAGCCCCAGCCGGACCGAGGGATGTGGCAGTGAGACCAGCAGCATGTAGAGGGGGATCGAACG
131 CTAAGCCCCAGCCGCACCGAGGGATGTGGCAGTGAGACCAGCAGCATGCAGAGGGGGATCGAACG
* * * * * *
17378134 GGTCCCTGACTTGCTCATTATGCCTCTCCTGTCGGCCCAGTGCCCGTACGCTTATTTCGTGTGTT
196 GATCCCTGACTTGCTCATTATGCCTCTCCTCTCAGCCCAGTGCACGTACGCTCATTTCGTGGGTT
* *
17378199 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGTTGCTGTAGCAGG
261 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGTTACGGTAGCAGG
17378264 ACCA
326 ACCA
* * * * * *
17378268 GTAGCAGGATCGACAGCACGTAAGGGGGATTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCT
*
17378333 GA-CTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
66 GATC-GGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * ** * ** * * **
17378397 TCTAAGCCCTAGCTGCACCTTGGGTTGTGGTTGTGGGACCCGCAGCATGCAGAGGGGGATCGGGT
130 TCTAAGCCCCAGCCGCACCGAGGGATGTGGCAGTGAGACCAGCAGCATGCAGAGGGGGATC-GAA
* * * *
17378462 C-GAT-CCTCGGCTTGCGT-ATTATGCCTCTCCTCTCAGCTCAGTGCACGTATGCTCCTTTCGTG
194 CGGATCCCT-GACTTGC-TCATTATGCCTCTCCTCTCAGCCCAGTGCACGTACGCTCATTTCGTG
* * * *
17378524 GGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGATCGAGTGTTACGGTAG
257 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGTTACGGTAG
17378589 CAGGACCA
322 CAGGACCA
* * * *
17378597 GCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCT
1 GCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCT
* * * * * *
17378662 GATCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAATTCATCCCCA-G
66 GATCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATG
17378726 TCTAAGC
130 TCTAAGC
17378733 ATACAGAGTT
Statistics
Matches: 395, Mismatches: 64, Indels: 12
0.84 0.14 0.03
Matches are distributed among these distances:
328 4 0.01
329 384 0.97
330 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (329 bp):
GCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCT
GATCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAGCCGCACCGAGGGATGTGGCAGTGAGACCAGCAGCATGCAGAGGGGGATCGAACG
GATCCCTGACTTGCTCATTATGCCTCTCCTCTCAGCCCAGTGCACGTACGCTCATTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGTTACGGTAGCAGG
ACCA
Found at i:17378735 original size:26 final size:26
Alignment explanation
Indices: 17378705--17378757 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17378695 GTTGGCTTAG
*
17378705 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* * *
17378731 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
17378757 G
1 G
17378758 ATCAGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:17379244 original size:513 final size:513
Alignment explanation
Indices: 17378304--17379245 Score: 1329
Period size: 513 Copynumber: 1.8 Consensus size: 513
17378294 GGATTGGGTC
* * * *
17378304 GATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTT
1 GATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCATGGGTT
* * * **
17378369 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGCACCTTGGGTTGTGGTTGTGGG
66 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCTGCACCTTGGGTTGTGGCTACGGG
* * * *
17378434 ACCCGCAGCATGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGTATTATGCCTCTCCTCTCAGC
131 ACCCGCAGCACGCAGAGGGGGATCGGGTCAATCCTCGGCTTGCGCATTATACCTCTCCTCTCAGC
* * * * *
17378499 TCAGTGCACGTATGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGAT
196 TCAGTGCACGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
* * *
17378564 CAGATCGGATCGAGTGTTACGGTAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCG
261 CAGATCAGACCGAGTGTTACGGTAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGATCG
* * * ** *
17378629 AGCCGATCCTCGGCTTGTGCATTCTGCCTCTCTGATCGACTGAGCACCCGCACGCTCATTTCATG
326 AGCCAATCCCCGACTTACGCATTCTGCCTCTCTGATCGACTGAGCACCCGCACACTCATTTCATG
*
17378694 GGTTGGCTTAGGCATACGGAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGA
391 GGTTGGCTTAGGCATACAGAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGA
17378759 TCAGATTGGATCGAGGGTTGCAGCAGCAGCATCGACAGCAAGCAAGGGGGACCAGGCT
456 TCAGATTGGATCGAGGGTTGCAGCAGCAGCATCGACAGCAAGCAAGGGGGACCAGGCT
* * * *
17378817 GATCCCCGGCTTGCACATTCTGTCTCTCCGACCGGTTGAGCGCCCGCACACCCGTTTCATGGGTT
1 GATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCATGGGTT
*
17378882 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCTGGACCTTGGGTTGTGGCTACGGG
66 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCTGCACCTTGGGTTGTGGCTACGGG
* * * ** *
17378947 A-CTGACAGCACGTAGAGGGGGATTGGGTCAATCCTCGGCTTGCGCATTATACCTCTTTTGC-CT
131 ACCCG-CAGCACGCAGAGGGGGATCGGGTCAATCCTCGGCTTGCGCATTATACCTCTCCT-CTCA
* **
17379010 GCTCAGTGCCCGTACGCTCATTTCATGGGTTGACTTTTGCATACGGAGTTCATTCCCAATCTAAG
194 GCTCAGTGCACGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
** * *
17379075 ATCAGATCAGACCGAGTGTTGTGGTAGCAGGACTAGCAGCAGGATCGACAGCATGCAAGGGGGA-
259 ATCAGATCAGACCGAGTGTTACGGTAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGAT
* *
17379139 CTGAGCCAATCCCCGACTTACGCATTCTGCCTAT-TCGA-CTGGCTGAGCACCCGCACACTCATT
324 C-GAGCCAATCCCCGACTTACGCATTCTGCCTCTCT-GATC-GACTGAGCACCCGCACACTCATT
* * *
17379202 TCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGC
386 TCATGGGTTGGCTTAGGCATACAGAATTCATCCCCA-GTCTAAGC
17379246 CCCAGCCGGA
Statistics
Matches: 372, Mismatches: 51, Indels: 12
0.86 0.12 0.03
Matches are distributed among these distances:
512 8 0.02
513 363 0.98
514 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (513 bp):
GATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCTGCACCTTGGGTTGTGGCTACGGG
ACCCGCAGCACGCAGAGGGGGATCGGGTCAATCCTCGGCTTGCGCATTATACCTCTCCTCTCAGC
TCAGTGCACGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
CAGATCAGACCGAGTGTTACGGTAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGATCG
AGCCAATCCCCGACTTACGCATTCTGCCTCTCTGATCGACTGAGCACCCGCACACTCATTTCATG
GGTTGGCTTAGGCATACAGAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGA
TCAGATTGGATCGAGGGTTGCAGCAGCAGCATCGACAGCAAGCAAGGGGGACCAGGCT
Found at i:17379441 original size:26 final size:26
Alignment explanation
Indices: 17379411--17379463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17379401 GTTGACTTAG
17379411 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17379437 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17379463 G
1 G
17379464 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17379909 original size:158 final size:156
Alignment explanation
Indices: 17379437--17379937 Score: 489
Period size: 158 Copynumber: 3.2 Consensus size: 156
17379427 CCCAGTCTAA
** * *
17379437 GCATATGGAGTTCATTCCCA-GTCTAAGATTGGACCGAACCGAGGGTTACGGCTATAAGATCGGC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTACGG-TACAAGATCGGC
* * * *
17379501 AGCACGTAGGGGG-TCGGGCCGAT-CCCAGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGC
64 AGCACGTAGGGGGATCGGGCCGGTCCCCA-GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * * *
17379564 CCGCCCACCCGTTTTGTGGGTTGGCTTAG
128 CCGCACGCTCGTTCTGTGGGTTGGCTTAG
* * * *
17379593 GCATAGGGAGTTCATTCCATGTTTAA-ACCCCAG-CCGGATCGAGGGTTAC-G-ACAACGGGATC
1 GCATATGGAGTTCATTCCATGTCTAAGA--TCAGACCGGACCGAGGGTTACGGTACAA---GATC
* ** * * * * * * * *
17379654 GACAGCATGCAAAGAGGGACCGGGTCGGTCCCCGGCTTGCTCATTATGCCTCTCCGATCGGTTCA
61 GGCAGCA--CGTAGGGGGATCGGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * * * *
17379719 GTGCCTGAACGCTAGATTC-GTGGGTTGACTTAG
124 GCGCCCGCACGCTCG-TTCTGTGGGTTGGCTTAG
*
17379752 GCATATGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAAGATCGGT
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTACGGTA-CAAGATCGGC
*
17379816 AGCACGTAGGGGGGATCGGGCCGGTCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGC
64 AGCACGTA-GGGGGATCGGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
17379881 CCGCACGCTCGTTCTGTGGGTTGGCTTAG
128 CCGCACGCTCGTTCTGTGGGTTGGCTTAG
**
17379910 GCATACAGAGTTCATTCCATGTCTAAGA
1 GCATATGGAGTTCATTCCATGTCTAAGA
17379938 ATAAGGAGTT
Statistics
Matches: 269, Mismatches: 56, Indels: 38
0.74 0.15 0.10
Matches are distributed among these distances:
153 3 0.01
155 5 0.02
156 44 0.16
157 6 0.02
158 101 0.38
159 99 0.37
160 7 0.03
161 1 0.00
162 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTACGGTACAAGATCGGCAG
CACGTAGGGGGATCGGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG
CACGCTCGTTCTGTGGGTTGGCTTAG
Found at i:17380164 original size:26 final size:25
Alignment explanation
Indices: 17380119--17380168 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
17380109 TGACTTAGGC
17380119 ATACGGAGTCATCCCTAGTCTAAGT
1 ATACGGAGTCATCCCTAGTCTAAGT
17380144 ATACGGAGTTCATTCCC-AGTCTAAG
1 ATACGGAG-TCA-TCCCTAGTCTAAG
17380169 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.35
26 11 0.48
27 4 0.17
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (25 bp):
ATACGGAGTCATCCCTAGTCTAAGT
Found at i:17380336 original size:26 final size:26
Alignment explanation
Indices: 17380300--17380352 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17380290 GTTGACTTAG
17380300 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
17380326 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17380352 G
1 G
17380353 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17380477 original size:184 final size:183
Alignment explanation
Indices: 17380097--17380498 Score: 518
Period size: 184 Copynumber: 2.2 Consensus size: 183
17380087 CCCACACACT
* * *
17380097 CGTTTCGTGGGTTGACTTAGGCATACGGAGTCATCCCTAGTCTAAGTATACGGAGTTCATTCCCA
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTCATCCCCAATCTAAGCATACGGAGTTCATTCCCA
* * * *
17380162 GTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGACTGGGC
66 ATCTAAGATCAAACCGGACCGAGGGTTGTGGCAACACGATCGGCAGCACGAAGGGGGGACTGGGC
* * * *
17380227 AGATCCCTGGCTTACGCATTCTACCTCTCCGACCGACTGAACGCCCGCACGCC
131 AGATCCCTGACTTACGCATTCTACCTCTCCAACCGACTGAACACCCGCACGCA
*
17380280 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCC
1 CGTTTCGTGGGTTGACTTAGGCATACGGAG-TCATCCCCAATCTAAGCATACGGAGTTCATTCCC
** * *
17380345 AATCTAAGATCGGACCGGACTGAGGGTTGTGGCAACACGATCGGTAGCACGAAGGGGGGACTGGG
65 AATCTAAGATCAAACCGGACCGAGGGTTGTGGCAACACGATCGGCAGCACGAAGGGGGGACTGGG
* * * * * ** *
17380410 CTGAT-CCTCGACTTGCGCATTCTGCCTTTCCAACCGGCTGAGTACCTGCACGCA
130 CAGATCCCT-GACTTACGCATTCTACCTCTCCAACCGACTGAACACCCGCACGCA
* * * *
17380464 CGTTTCATGGGTTGGCTTAGGTATAGGGAGCTCAT
1 CGTTTCGTGGGTTGACTTAGGCATACGGAG-TCAT
17380499 TCCATGTCTA
Statistics
Matches: 187, Mismatches: 30, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
183 32 0.17
184 155 0.83
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
CGTTTCGTGGGTTGACTTAGGCATACGGAGTCATCCCCAATCTAAGCATACGGAGTTCATTCCCA
ATCTAAGATCAAACCGGACCGAGGGTTGTGGCAACACGATCGGCAGCACGAAGGGGGGACTGGGC
AGATCCCTGACTTACGCATTCTACCTCTCCAACCGACTGAACACCCGCACGCA
Found at i:17380809 original size:158 final size:157
Alignment explanation
Indices: 17380326--17380827 Score: 433
Period size: 158 Copynumber: 3.2 Consensus size: 157
17380316 CCCAATCTAA
* * * * *
17380326 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGACCGGACTGAGGGTTGTGGCAACACGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAGGATCGAT
* * * * * * ** * **
17380390 AGCACGAAGGGGGGACTGGGCTGATCCTCGACTTGCGCATTCTGCCTTTCCAACCGGCTGAGTAC
65 AGCACGCAGAGGGGACTGGGC-GGTCCCCGACTTGCTCATTCTGCCTCTCCGGCAGGCTGAGCGC
* * *
17380455 CTGCACGCACGTTTCATGGGTTGGCTTAG
129 CAGCACGCTCGTTTCAGGGGTTGGCTTAG
* * * * ** * *
17380484 GTATAGGGAGCTCATTCCATGTCTAA-ACCCAAGCCGGA-TAGAGGGTTATGGTAGCAGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACT-GAGGGTTGTGGTAGCAGGATCGA
* * * * * * * * *
17380547 CAGCACGCAGAGGGGGA-TCGAGCTGACCCTTGACTTG-TGCATTATCCCTCTCCGGTAGGCTCA
64 TAGCACGCAGA-GGGGACT-GGGCGGTCCC-CGACTTGCT-CATTCTGCCTCTCCGGCAGGCTGA
* * * *
17380610 GCGCCAGCACGCTCGTCTC-GTGAGTTGACGTAG
125 GCGCCAGCACGCTCGTTTCAG-GGGTTGGCTTAG
*
17380643 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTGGACTGAGGGTTGTGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAGGATCGAT
* * * * *
17380707 AACACGCAGACGAGACTGGGTCGGTCCCCGGCTTGCTCATTCTGCCTCTCTGGCAGGCTGAGCGC
65 AGCACGCAGAGGGGACTGGG-CGGTCCCCGACTTGCTCATTCTGCCTCTCCGGCAGGCTGAGCGC
*
17380772 CCGCACGCTCGTTTCAGGGGTTGGCTTAG
129 CAGCACGCTCGTTTCAGGGGTTGGCTTAG
17380801 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17380828 CATACAGAGT
Statistics
Matches: 260, Mismatches: 68, Indels: 32
0.72 0.19 0.09
Matches are distributed among these distances:
157 10 0.04
158 129 0.50
159 114 0.44
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAGGATCGATA
GCACGCAGAGGGGACTGGGCGGTCCCCGACTTGCTCATTCTGCCTCTCCGGCAGGCTGAGCGCCA
GCACGCTCGTTTCAGGGGTTGGCTTAG
Found at i:17380830 original size:26 final size:26
Alignment explanation
Indices: 17380801--17380853 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17380791 GTTGGCTTAG
*
17380801 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17380827 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17380853 G
1 G
17380854 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17381217 original size:26 final size:26
Alignment explanation
Indices: 17381181--17381233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17381171 GTTGACTTAG
*
17381181 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17381207 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17381233 G
1 G
17381234 AGCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17381591 original size:159 final size:158
Alignment explanation
Indices: 17381207--17381592 Score: 400
Period size: 159 Copynumber: 2.4 Consensus size: 158
17381197 CCCAGTCTAA
* * * * * *
17381207 GCATACGGAGTTCATTCCCAGTCTAAGAGCGAACCAGATCGAGGGTTGCGGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCGAACAAGACCGAAGGTTGCGGTAGCAGGATCGGTA
** * * * * *
17381272 GCATGCAGAGGGGATAAGGGCGATCCCCGGATTACGCATTCTGCCTCCCCGGTCGACTGAGCGCC
66 GCACACAGAGGAGATAAGGGCAATCCCCGGATTACGCATTATGCCTCCCCGGTCGACTCAGCACC
* * * *
17381337 CGCACGCTCGTTTCCTGGGTTGGCTTAG
131 CGAACGCTCGTTTCATGGGTCGACTTAG
* * * * * ** * * * * *
17381365 GCATAGGGAGTTCATT-CCATGTCCAAGCCCCAGCTGGACCGATGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCGAACAAGACCGAAGGTTGCGGTAGCAGGATCGGT
* *
17381429 AGCACACAGAGGAAGAT-CGGGCCAATCCCC-GACTTACGCATTATGCCTCTCCGGTCGACTCAG
65 AGCACACAGAGG-AGATAAGGG-CAATCCCCGGA-TTACGCATTATGCCTCCCCGGTCGACTCAG
17381492 CACCCGAACGCTCGTTTCATGGGTCGACTTAG
127 CACCCGAACGCTCGTTTCATGGGTCGACTTAG
* * * *
17381524 GCATACGGACTTCATTCCCAGTCTAAGATCGGACAAGACCGAAGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCGAACAAGACCGAAGGTTGCGGTAGCAGGATCGGTA
17381589 GCAC
66 GCAC
17381593 GCAGGAGGGA
Statistics
Matches: 178, Mismatches: 45, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.02
158 59 0.33
159 113 0.63
160 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCGAACAAGACCGAAGGTTGCGGTAGCAGGATCGGTA
GCACACAGAGGAGATAAGGGCAATCCCCGGATTACGCATTATGCCTCCCCGGTCGACTCAGCACC
CGAACGCTCGTTTCATGGGTCGACTTAG
Found at i:17381731 original size:26 final size:26
Alignment explanation
Indices: 17381681--17381733 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17381671 GTTGGCTTAG
* *
17381681 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
17381707 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17381733 G
1 G
17381734 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17382401 original size:26 final size:26
Alignment explanation
Indices: 17382365--17382417 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17382355 GTTGACTTAG
17382365 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17382391 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17382417 G
1 G
17382418 ATAGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17382736 original size:26 final size:26
Alignment explanation
Indices: 17382696--17382748 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17382686 GTTGGCTTAG
*
17382696 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACAGAGGTCATTCCCA-GTCTAA
*
17382722 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
17382748 G
1 G
17382749 AACCGAGGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:17383227 original size:530 final size:517
Alignment explanation
Indices: 17381810--17383793 Score: 1947
Period size: 513 Copynumber: 3.8 Consensus size: 517
17381800 CGGGCCGATT
* * * *
17381810 CCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATCATCCCCAGTCTAAGCATACGTA
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * *
17381875 GTTCATTCCCAGTCGAAGATTA-AACCGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACACAG
66 GTTCATTCCCAGTCTAAGA-TAGAACCGGACCGAGGGTTG-GGTAG-AGGATCGAT-G----CAG
* * * * * *
17381939 GGTGGATC-AGGTCGATCCC-CGACTTGCGCATTCTGCCTCTTCGGCAT-GCTGAGCGCCCGTAC
123 GGGGGATCGA-GCCGATCCCTAG-CTTGCGCATTCTGCCTC-TCCG-TTGGCTGAGCGCCCGCAC
* *
17382001 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCCCAG-CTGGACCG
184 G-TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCG
** * * * ** *
17382065 AGGGTTGTGGCAGCGGGATCGACAGCATGTAGAGGGAGACCGGGCTGATCCCCGGGTTGCACATT
247 AGGGTTGTGGCAGCGGGATCGGTAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
* * * * * * * *
17382130 ATGCCTCTCCGATCGGCTTAGCACCCGAACGCTCATTTCGTGGGTCGACTTAGGCATACAGAGTT
312 CTGCCTCTCCG-TCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
** ** * * ** *
17382195 CATTCCCA-GTCTAAG-AT-C-AGACCAGACCGAGGGT-TACG-GTAGCA-GGACCAGCAGCAAG
376 CATT-CCATGTCTAAGCATACGAGTTCATTCCCA--GTCTAAGAACAG-AGGGACCAGCAGCAGG
* * * * * * * *
17382253 ATAGGCAGCACGCAGGAGAGACCAAGCCGATCTCTGGCTTACGCATTCTGCCTCTCTGTCGGCCT
437 ATCGACAGCACGTAGGGGGGAACAAGCCGATCCCT-GCTTACGCATTCTGCCTCTCAGTCGGCCT
*
17382318 CTCTGGTTGGCTGAGCG
501 CTCTGGTTGGCTGAGTG
* * * *
17382335 CCTGCACGCTCATTTTGTGTGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
*
17382400 GTTCATTCCCAGTCTAAGATAGAACCGGACCGAGGGTTGCGGT--A-G--C-ATGCATGGGGGAT
66 GTTCATTCCCAGTCTAAGATAGAACCGGACCGAGGGTTG-GGTAGAGGATCGATGCAGGGGGGAT
* * *
17382459 CGAGCTGATCCCCAGCTTGCGCATTCTGCCTGTTCCGTTGGCTGAGCGCCCGCACGTCTGTTTCG
130 CGAGCCGATCCCTAGCTTGCGCATTCTGCCT-CTCCGTTGGCTGAGCGCCCGCACGTC-GTTTCG
* * *
17382524 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGTTATGGC
193 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
* * * * *
17382589 AGCGGGATCGGCAGCACGTAGAGGGGAACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCG
258 AGCGGGATCGGTAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-
* * *
17382654 GTCGGCTAAGCGCCCGCACTCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGGTCATTCCATGTC
322 GTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * ** *
17382719 TAAGCATACAGAGTTCATTCCCAGTCTAAGAACCGAGGGTTA-CGGCAGCAGGATCGGTAGCATG
387 TAAGCATAC-GAGTTCATTCCCAGTCTAAGAACAGAGGG--ACCAGCAGCAGGATCGACAGCACG
* * * * * * *
17382783 TTGGGGGGAACAGGTCGATCCCCT-CTTACGCAATCTACCTCTCCGGTCGGCCT-TTTCGGTTGG
449 TAGGGGGGAACAAGCCGAT-CCCTGCTTACGCATTCTGCCTCT-CAGTCGGCCTCTCT-GGTTGG
17382846 CTGAGTG
511 CTGAGTG
* * * * *
17382853 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGATAATCCCCAGTCTAAGCATACGAA
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * *
17382918 GTTCATTCCCAGTCGAAGATCGAACCAGACCGAGGGTTGGGGTAGCAGGATCGATAGCACCCAGG
66 GTTCATTCCCAGTCTAAGATAGAACCGGACCGAGGGTT-GGGTAG-AGGATCGAT-G----CAGG
* ** *
17382983 GGGGATCG-GCCCGATCCCTAACTTGCATATTCTGCCTCTCCGACCT-GCTGAGCGCCCGCACGT
124 GGGGATCGAG-CCGATCCCTAGCTTGCGCATTCTGCCTCTCCG--TTGGCTGAGCGCCCGCACG-
*
17383046 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGGACCGAG
185 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAG
* *
17383110 GGTTGTGGCAGCGGGA-CTGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTA
249 GGTTGTGGCAGCGGGATC-GGTAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTC
* * * * * ***
17383174 TGCCTCTTCGATCGGCTTAGCACCCGAACGCTCGTTTCATGGGTCAACTTAGGCATACGGAGTTC
313 TGCCTCTCCG-TCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* ** ** ** * * *
17383239 ATTCCCA-ATCTAAG-AT-CG-GACCAGACTAAGGGT-TATG-GCAGCGGGACCAGCAGCAGGAT
377 ATT-CCATGTCTAAGCATACGAGTTCATTCCCA--GTCTAAGAACAGAGGGACCAGCAGCAGGAT
* * * *
17383298 CGACAGCACGTAGGGGGGACCAAGCCGATCTCTGGCTTACACATTCTGCCTCTTCAGTCAGCCTC
439 CGACAGCACGTAGGGGGGAACAAGCCGATCCCT-GCTTACGCATTCTGCCTC-TCAGTCGGCCTC
* *
17383363 TCTGGCTGACTGAGTG
502 TCTGGTTGGCTGAGTG
*
17383379 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATGCGGAGTTCATCCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * * *
17383444 GTTCATTCTCTGTCTAAGATAGAATCGGACCGAGGGTT--GCAGTAGGAT-G-T--AGGGGGGAC
66 GTTCATTCCCAGTCTAAGATAGAACCGGACCGAGGGTTGGGTAG-AGGATCGATGCAGGGGGGAT
* * * * * *
17383503 CGAGCCGATCCCTGGCTTACGCATTCTGCATCTTCGGTTGGCTGAGCGCCCGCACGCCCATTTCG
130 CGAGCCGATCCCTAGCTTGCGCATTCTGCCTC-TCCGTTGGCTGAGCGCCCGCACG-TCGTTTCG
* *
17383568 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGT
193 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
* * * *
17383633 AGCAGGATCGGTAGAACGTAGAGGGGGACCAGGTCGATCCCC-AGCTTGCGCATTCTGCCTCTCC
258 AGCGGGATCGGTAGCACGTAGAGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCC
* *
17383697 GGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
322 GTC-GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
17383762 CTAAGCATACGGAGTTCATTCCCAGTCTAAGA
386 CTAAGCATAC-GAGTTCATTCCCAGTCTAAGA
17383794 GTTTGAGCCA
Statistics
Matches: 1203, Mismatches: 193, Indels: 133
0.79 0.13 0.09
Matches are distributed among these distances:
512 5 0.00
513 231 0.19
514 228 0.19
515 11 0.01
516 7 0.01
517 33 0.03
518 150 0.12
519 6 0.00
521 3 0.00
522 3 0.00
523 8 0.01
524 7 0.01
525 129 0.11
526 135 0.11
527 7 0.01
528 3 0.00
529 10 0.01
530 221 0.18
531 6 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (517 bp):
CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATAGAACCGGACCGAGGGTTGGGTAGAGGATCGATGCAGGGGGGATC
GAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGTTGGCTGAGCGCCCGCACGTCGTTTCGTGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGC
GGGATCGGTAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCG
GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACGAGTTCATTCCCAGTCTAAGAACAGAGGGACCAGCAGCAGGATCGACAGCACGTAGGGGG
GAACAAGCCGATCCCTGCTTACGCATTCTGCCTCTCAGTCGGCCTCTCTGGTTGGCTGAGTG
Found at i:17383271 original size:159 final size:159
Alignment explanation
Indices: 17382909--17383285 Score: 382
Period size: 159 Copynumber: 2.4 Consensus size: 159
17382899 CCCAGTCTAA
* * * * *
17382909 GCATACGAAGTTCATTCCCAGTCGAAGATCGAACCAGACCGAGGGTTGGGGTAGCAGGA-TCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCGGGACTCGAT
* * * * * *
17382973 AGCACCCAGGGGGGATCGGCCCGATCCCTAACTTGCATATTCTGCCTCTCCGACCTGCTGAGCGC
66 AGCACCCAGGGGGGACCGGCCCGATCCCCAACTTGCACATTATGCCTCTCCGACCGGCTGAGCAC
* * * ***
17383038 CCGCACGTTCGTTTCGTGGGTTGGCTTAG
131 CCGAACGCTCGTTTCATGGGTCAACTTAG
* ** * * ** *
17383067 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGCAGCGGGACT-GG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCGGGACTCGA
* * * * * * *
17383130 TAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTTAGC
65 TAGCACCCAG-GGGGGACCGGCCCGATCCCCAACTTGCACATTATGCCTCTCCGACCGGCTGAGC
17383195 ACCCGAACGCTCGTTTCATGGGTCAACTTAG
129 ACCCGAACGCTCGTTTCATGGGTCAACTTAG
* * ** *
17383226 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTAAGGGTTATGGCAGCGGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCGGGAC
17383286 CAGCAGCAGG
Statistics
Matches: 171, Mismatches: 44, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
157 3 0.02
158 53 0.31
159 112 0.65
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCGGGACTCGAT
AGCACCCAGGGGGGACCGGCCCGATCCCCAACTTGCACATTATGCCTCTCCGACCGGCTGAGCAC
CCGAACGCTCGTTTCATGGGTCAACTTAG
Found at i:17383776 original size:26 final size:26
Alignment explanation
Indices: 17383740--17383792 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17383730 GTTGGCTTAG
17383740 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17383766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17383792 G
1 G
17383793 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17384421 original size:26 final size:26
Alignment explanation
Indices: 17384391--17384443 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17384381 GTTGGCTTAG
*
17384391 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17384417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17384443 G
1 G
17384444 ATCCGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17384630 original size:26 final size:26
Alignment explanation
Indices: 17384600--17384652 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17384590 GTTGACTTAG
17384600 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17384626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17384652 G
1 G
17384653 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17384978 original size:26 final size:26
Alignment explanation
Indices: 17384942--17384994 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17384932 GTTGACTTAG
17384942 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
17384968 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17384994 G
1 G
17384995 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17385100 original size:184 final size:184
Alignment explanation
Indices: 17384872--17385207 Score: 498
Period size: 184 Copynumber: 1.8 Consensus size: 184
17384862 ATCGAGCTGA
* *
17384872 TCCCCGGCTTACGCATTCTACCTCTTCGGCCGGTTGACCACCCGCACGCTCATTT-TGTGGGTTG
1 TCCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGACCACCCGCACGCTCATTTCT-TGGGTTG
* * * *
17384936 ACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
65 ACTCAGGCATACGAAGTTCATTCCATA-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
17385000 ACCGGA-CTGAGGGTTGCGGCAGCAAGATTGACAGCACGTTGGGGGGATCGGATTGG
129 ACCGGATC-GAGGGTTGCGGCAGCAAGATTGACAGCACGTTGGGGGGATCGGATTGG
* * * * * *
17385056 TCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCTTGGGTTGG
1 TCCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGACCACCCGCACGCTCATTTCTTGGGTTGA
*
17385121 CTCAGGCGTACGAAGTTCATTCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
66 CTCAGGCATACGAAGTTCATTCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
*
17385186 CGGATCGAGGGTTGCGGTAGCA
131 CGGATCGAGGGTTGCGGCAGCA
17385208 GGACCAGTGA
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
184 128 0.95
185 7 0.05
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.26
Consensus pattern (184 bp):
TCCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGACCACCCGCACGCTCATTTCTTGGGTTGA
CTCAGGCATACGAAGTTCATTCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGATCGAGGGTTGCGGCAGCAAGATTGACAGCACGTTGGGGGGATCGGATTGG
Found at i:17385543 original size:26 final size:26
Alignment explanation
Indices: 17385503--17385558 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
17385493 TGGGTTGACT
*
17385503 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGCC
* *
17385529 TAAGCATACGGAGTTCATTCCCAGCC
1 TAAGCATACGAAGTTCATCCCCAGCC
17385555 TAAG
1 TAAG
17385559 ATAGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGCC
Found at i:17386070 original size:26 final size:26
Alignment explanation
Indices: 17386040--17386092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17386030 GTTGACTTAG
*
17386040 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17386066 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17386092 G
1 G
17386093 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17386576 original size:26 final size:26
Alignment explanation
Indices: 17386524--17386576 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17386514 GTTGGCTTAG
*
17386524 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17386550 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
17386576 G
1 G
17386577 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17386766 original size:26 final size:26
Alignment explanation
Indices: 17386730--17386785 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17386720 TGGGTTGACT
17386730 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
17386756 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
17386782 TAAG
1 TAAG
17386786 ATCGAACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:17386954 original size:26 final size:26
Alignment explanation
Indices: 17386917--17386969 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17386907 GTTGGCTTAG
17386917 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17386943 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
17386969 G
1 G
17386970 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17387677 original size:26 final size:26
Alignment explanation
Indices: 17387640--17387692 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17387630 GTAGACTTAG
17387640 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
17387666 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17387692 G
1 G
17387693 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17391720 original size:26 final size:26
Alignment explanation
Indices: 17391668--17391720 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
17391658 ATCTTTCTAA
* * *
17391668 AAAAATTTTAAAAAATCCCGAACAAT
1 AAAAAGTTTAAAAAATCACGAAAAAT
* *
17391694 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCACGAAAAAT
17391720 A
1 A
17391721 GAAACCGGGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.60, C:0.11, G:0.06, T:0.23
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCACGAAAAAT
Found at i:17392599 original size:26 final size:26
Alignment explanation
Indices: 17392551--17392603 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17392541 GTTGACTTAG
* *
17392551 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATACCTAGTCTAA
17392577 GCATACGAAGTTCATTACC-AGTCTAA
1 GCATACGAAGTTCA-TACCTAGTCTAA
17392603 G
1 G
17392604 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCTAGTCTAA
Found at i:17392623 original size:626 final size:626
Alignment explanation
Indices: 17391432--17392629 Score: 1939
Period size: 626 Copynumber: 1.9 Consensus size: 626
17391422 TGACACTTGG
* * * *
17391432 CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCTCGTAAAGAGCATTTG
1 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCGTAAAGAGCATTTG
**
17391497 AGATTTTAAAGGTTTGCTGTTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
66 AGATTTTAAAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
17391562 GTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
131 GTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* *
17391627 AGGATCACCTCTACTAAATATGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACA
196 AGGATCACCTCTACCAAATATGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCAAACA
* *
17391692 ATAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGGGTCGTCTTACCACGAAACTTCACATGAA
261 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCACATGAA
*
17391757 GGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCGTAGAAATATGA
326 GGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCGCAGAAATATGA
* *
17391822 AGATGTGCTTGAACCCACCAACCACCCGTTCGATCCCCGGCTTGGGCATCCTGCCTTTCTGGTCG
391 AGATGTGCTTGAACCCACCAACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCG
* * * *
17391887 ATTGAGCATCTGTATGATCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAG
456 ACTGAGCACCCGCATGATCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAG
* * * *
17391952 CATATGGAGTCCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACGCAAGGGGG
521 CATACGAAGTCCATTACCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACGCAAGGGGG
17392017 ATCGGGCCGATCCCTGCCTTGCACATTCTGCCTGTCCCTAT
586 ATCGGGCCGATCCCTGCCTTGCACATTCTGCCTGTCCCTAT
*
17392058 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTG
1 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCGTAAAGAGCATTTG
* *
17392123 AGATTTTATAGGTTTGTTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
66 AGATTTTAAAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
17392188 GTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
131 GTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * * * *
17392253 AGGATCACCTCTACCAAATTTTGGGACAAAACTCTTTCTAAAAAATTTTTAACAAATCCCAAACC
196 AGGATCACCTCTACCAAATATGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCAAACA
* *
17392318 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAA
261 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCACATGAA
* *
17392383 GGCTTAGGGGACCATTGTATGAATTTGCACA-CCATAAAAATGGCATTGGCATGGCAGAAATATG
326 GGCTTAGGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCATCGCAGAAATATG
* * *
17392447 AAGATGTGCTTGAACCCACCTATCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTC
390 AAGATGTGCTTGAACCCACCAACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTC
* * * * * * *
17392512 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAA
455 GACTGAGCACCCGCATGATCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
* * *
17392577 GCATACGAAGTTCATTACCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCA
520 GCATACGAAGTCCATTACCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCA
17392630 ATAGGATTGG
Statistics
Matches: 522, Mismatches: 49, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
626 521 1.00
627 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (626 bp):
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCGTAAAGAGCATTTG
AGATTTTAAAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACCTCTACCAAATATGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCAAACA
ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCACATGAA
GGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCGCAGAAATATGA
AGATGTGCTTGAACCCACCAACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCG
ACTGAGCACCCGCATGATCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAG
CATACGAAGTCCATTACCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACGCAAGGGGG
ATCGGGCCGATCCCTGCCTTGCACATTCTGCCTGTCCCTAT
Found at i:17393079 original size:26 final size:26
Alignment explanation
Indices: 17393050--17393102 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17393040 GTTGGCTTAG
*
17393050 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17393076 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17393102 G
1 G
17393103 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17393808 original size:26 final size:26
Alignment explanation
Indices: 17393774--17393823 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17393764 GACTGAGGCT
*
17393774 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGAAGTTCATCCCCAGTCTAAGCA
*
17393800 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
17393824 GTCAGACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCA
Found at i:17394254 original size:158 final size:160
Alignment explanation
Indices: 17393797--17394299 Score: 486
Period size: 158 Copynumber: 3.2 Consensus size: 160
17393787 CCCAGTCTAA
* ** * *
17393797 GCATACGAAGTTCATTCCCA-GTCTAAG-GTCAGACTAGATCGAGGGTTGCA-GCAGCAGGA-TC
1 GCATACGGAGTTCATTCCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTG-AGGCAGCAGGACT-
** * ** * * *
17393858 GGTAGCACGTAG-GGGGGATCAAGCTGATCCCCTACTTGCGCATTCTGTCTCTCCGACCGGCTGA
63 GACAGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGA
* *
17393922 GTGCCCGCATGCTTGTTTCATGGGTTGGCTTAG
128 GTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * **
17393955 GCATAAGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGACTGAC
1 GCATACGGAGTTCATTCCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGAGGCAGCAGGACTGAC
* ** * * * *
17394019 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTCGACCGGCTCAGTG
66 AGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTG
* * *
17394084 CCCACACGCTCGTTTCATGGGTTGACTTAT
131 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * *
17394114 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGAG-CAGATCGAGGG-TGAGGTAGCAGGATTGA
1 GCATACGGAGTTCATTCCCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGAGGCAGCAGGACTGA
* * * * * *
17394176 CCGCATGCAGGGGGGGATTGGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
65 CAGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGT
** * *
17394241 ATCCGCACACTCGTTTCGTGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
17394272 GCATACGGAGTTCATT-CCATGTATAAGC
1 GCATACGGAGTTCATTCCCATGTCTAAGC
17394300 ATATGGAGTT
Statistics
Matches: 279, Mismatches: 58, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 6 0.02
158 161 0.58
159 106 0.38
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGAGGCAGCAGGACTGAC
AGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTG
CCCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17395237 original size:26 final size:26
Alignment explanation
Indices: 17395188--17395240 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17395178 GTTGGCTTAG
*
17395188 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17395214 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
17395240 G
1 G
17395241 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17395716 original size:159 final size:157
Alignment explanation
Indices: 17395424--17395924 Score: 455
Period size: 157 Copynumber: 3.2 Consensus size: 157
17395414 CCCAGTCTAA
* * * * * * * * *
17395424 GCATACGAAGTTCATTCTA-GTCTAAG-ATCAGACCGGACCAATGGTTAC-GACAGCGAGATTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCTG-CAGCGGGATTGA
* * * * * *
17395486 TAGCACGCA-GGGGGACCGGGCCGTTCCTCGACTTACAG-ATTCTGCCTCTCCGATCGGCTAAGC
65 CAGCACGCAGGGGGGA-CGGGCCGATCCTCGGCTTGC-GCATTATGCCTCTCCGA-CCGCTAAGC
* * *
17395549 GCCTGCACGCCCATTCCGTGGGTTGACTTAG
127 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
* **
17395580 GCATA-GCGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATTGAGGGTTG-TGGCAGCGGGATTG
1 GCATACG-GAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCT-GCAGCGGGATTG
* * * * * *
17395642 ATAGGACGCAGAGGGGGATCGGGCTGATCCTCGTCTTGCGCATTATGCCTCTTCGACCAGCTCAG
64 ACAGCACGCAG-GGGGGA-CGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACC-GCTAAG
* *
17395707 CGCCCGCACGCTCATTTCATGGGTTGACTTAT
126 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * *
17395739 GCATACGGAGTTCATTCC-TAGTGTAAG-ATCAGATCAGACCGAGGGTTGCTGCATCTGGATTGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGCTGCAGCGGGATTGA
* * * * *
17395802 CAGCACGTAGGGGGGACGGGCCGATCTTTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
65 CAGCACGCAGGGGGGACGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCG-CTAAGCGC
* * *
17395867 CCGCACGGTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGACTTAG
17395896 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
17395925 TATGGAGTTC
Statistics
Matches: 278, Mismatches: 51, Indels: 30
0.77 0.14 0.08
Matches are distributed among these distances:
155 1 0.00
156 16 0.06
157 122 0.44
158 18 0.06
159 119 0.43
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCTGCAGCGGGATTGAC
AGCACGCAGGGGGGACGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGCTAAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:17395887 original size:157 final size:159
Alignment explanation
Indices: 17395487--17395924 Score: 455
Period size: 159 Copynumber: 2.8 Consensus size: 159
17395477 CGAGATTGGT
* * * * * *
17395487 AGCACGC--AGGGGGACCGGGCCGTTCCTCGACTTACAG-ATTCTGCCTCTCCGATCGGCTAAGC
1 AGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGC-GCATTCTGCCTCTCCGACCGACTAAGC
* * * *
17395549 GCCTGCACGCCCATTCCGTGGGTTGACTTAGGCATA-GCGAGTTCATTCCATGTCTAAGCCCCAG
65 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCATGTCTAAGCACCAG
** *
17395613 CCAGATTGAGGGTTGTGGCAGCGGGATTGAT
129 CCAGACCGAGGGTTGTGGCAGCGGGATTGAC
* * * * * *
17395644 AGGACGCAGAGGGGGATCGGGCTGATCCTCGTCTTGCGCATTATGCCTCTTCGACC-AGCTCAGC
1 AGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGA-CTAAGC
* * * *
17395708 GCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTGTAAG-ATCAG
65 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG
* * *
17395771 ATCAGACCGAGGGTTGCT-GCATCTGGATTGAC
129 -CCAGACCGAGGGTTG-TGGCAGCGGGATTGAC
* * * *
17395803 AGCACGTAG-GGGGGA-CGGGCCGATCTTTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCG
1 AGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCG
* * *
17395866 CCCGCACGGTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17395925 TATGGAGTTC
Statistics
Matches: 230, Mismatches: 40, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
157 94 0.41
158 14 0.06
159 120 0.52
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCG
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
AGACCGAGGGTTGTGGCAGCGGGATTGAC
Found at i:17395925 original size:26 final size:26
Alignment explanation
Indices: 17395896--17395948 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17395886 GTTGGCTTAG
17395896 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17395922 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17395948 G
1 G
17395949 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17396944 original size:159 final size:158
Alignment explanation
Indices: 17396707--17397159 Score: 471
Period size: 159 Copynumber: 2.9 Consensus size: 158
17396697 AGGGTTGCGA
* * * * *
17396707 CAACAGGATTGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTTCGCATTCTGCCTCTCCG
1 CAACAGGATAGACAGCACGAAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * * * * *
17396772 GCCAGCTGAGCGCCCGCACGCCCGTTTCATGGGATACCTTAGGCATAGGGAGTTCATTCCATGTC
66 GCGA-TTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGTC
* * ***
17396837 TAAGCCCCAG-CTGGACCGACGGTTGTGG
130 TAAGCACCAGAATGGACCGACGGTTCCAG
** * * *
17396865 CAATGGGATAGACAGCACGAAGAGGGGGACCGGGCTGATCCCCGGCTTGCGTATTATGCCTCTCC
1 CAACAGGATAGACAGCACGAAG-GGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * ***
17396930 GGCTGATTCAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCCAT
65 GGC-GATTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGT
*** * *
17396995 CTAAG-ATTGGAATGGACTGAGGGTTCCAG
129 CTAAGCACCAGAATGGACCGACGGTTCCAG
* * *
17397024 CAGCAGGATCGATAGCAC-ATAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 CAACAGGATAGACAGCACGA-AGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * * **
17397088 GGCCGATTGAGCGCCCGCATGCTTGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
65 GG-CGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGT
17397153 CTAAGCA
129 CTAAGCA
17397160 TATGAAGTTC
Statistics
Matches: 238, Mismatches: 51, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
158 116 0.49
159 121 0.51
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CAACAGGATAGACAGCACGAAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCG
GCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCT
AAGCACCAGAATGGACCGACGGTTCCAG
Found at i:17397160 original size:26 final size:26
Alignment explanation
Indices: 17397131--17397183 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17397121 GTTGGCTTAG
*
17397131 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
17397157 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17397183 G
1 G
17397184 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17397651 original size:159 final size:158
Alignment explanation
Indices: 17397352--17397718 Score: 405
Period size: 159 Copynumber: 2.3 Consensus size: 158
17397342 GATGGATCGG
* * * *
17397352 CAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCG
1 CAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTCAGCG
* * *** **
17397417 CCCGCACGCGCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCACGTCTAATTCCCAGTT
66 CCCGCACGCGCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCACGTCTAATGAACAGAC
* * * * *
17397482 GAATCGAGGGTTGTGGCAGCGGGACCGA
131 CAACCGAGGGTTGCGACAGCAGGACCGA
* * * * *
17397510 TAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGT
1 CAGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTCAGC
* * * * * *
17397575 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC-CAGTCTAA-GAATAG
65 GCCCGCACGCGCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCAC-GTCTAATGAACAG
* *
17397638 ACCAGACCGAGGGTTGCGATAGCAGGATCGA
129 ACCA-ACCGAGGGTTGCGACAGCAGGACCGA
* * *
17397669 CAGCATGTAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCT
1 CAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCT
17397719 TCAGTCGGTT
Statistics
Matches: 170, Mismatches: 36, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
158 49 0.29
159 121 0.71
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
CAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTCAGCG
CCCGCACGCGCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCACGTCTAATGAACAGAC
CAACCGAGGGTTGCGACAGCAGGACCGA
Found at i:17397800 original size:26 final size:26
Alignment explanation
Indices: 17397764--17397816 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17397754 GCCGGCTTAG
*
17397764 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17397790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17397816 G
1 G
17397817 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17397947 original size:184 final size:184
Alignment explanation
Indices: 17397606--17397949 Score: 442
Period size: 184 Copynumber: 1.9 Consensus size: 184
17397596 GTTGACTTAG
*
17397606 GCATATGGAGTTCATTCCCAGTCTAAGAATAGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGAATAGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
* * * * * ** *
17397671 GCATGTAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCAGTCGGTTGAGCACC
66 GCATGCAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTTCAGCCGACTAAGCACC
* *
17397736 CGCGCACCTGTTTCGTGGGCCGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
131 CGCGCACCTATTTCATGGGCCGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
* * * * *
17397790 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGATCGAGGGTTGTGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAAT-AGACCAGACCGAGGGTTGCGATAGCAGGATCGAC
* * * *
17397854 AGCATGCAGGGGGGATCGGGCCGATCCCTGACTTGCGTATTCTACCTCTTCGGCCGACTAAGCA-
65 AGCATGCAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTTCAGCCGACTAAGCAC
**
17397918 CC-CGCACGCTCATTTCATGGGTTGGCTTAGGC
130 CCGCGCAC-CT-ATTTCATGGGCCGGCTTAGGC
17397950 TCATTCCATG
Statistics
Matches: 135, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
182 5 0.04
183 6 0.04
184 124 0.92
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAATAGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
GCATGCAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTTCAGCCGACTAAGCACC
CGCGCACCTATTTCATGGGCCGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
Found at i:17398150 original size:26 final size:26
Alignment explanation
Indices: 17398120--17398172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17398110 ATTGACTTAG
*
17398120 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17398146 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17398172 G
1 G
17398173 ATCGGACGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17398672 original size:26 final size:26
Alignment explanation
Indices: 17398621--17398673 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17398611 GTTGGCTTAG
*
17398621 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
17398647 GCATATGGAGTTCATTCCCAT-CCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
17398673 G
1 G
17398674 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17400931 original size:26 final size:26
Alignment explanation
Indices: 17400895--17400947 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17400885 ATTGACTTAG
17400895 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17400921 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17400947 G
1 G
17400948 ATAAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17401266 original size:26 final size:26
Alignment explanation
Indices: 17401226--17401278 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17401216 GTTGGCTTAG
*
17401226 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACAGAGGTCATTCCCA-GTCTAA
*
17401252 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
17401278 G
1 G
17401279 ATTGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:17401557 original size:197 final size:197
Alignment explanation
Indices: 17401198--17401564 Score: 454
Period size: 197 Copynumber: 1.9 Consensus size: 197
17401188 GCTAAGTGCC
* * *
17401198 CGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGCATACAGAGT
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGATCATCCCATGTCTAAGCATACAGAGT
* * * **
17401263 TCATTCCCAGTCTAAGATTGGATCAAACCGAAGGTTACGGCAGCAGGATCGGTAGCACGCTGGGG
66 TCATTCCCAGTCTAAGATCGAACCAAACCGAAGGTTACGGCAGCAGGATCGGTAGCACGCCAGGG
* ** *
17401328 GGGACCGGATCGATCCCCGCTTACGCATTCTGCCTTTCCGGTCGACCTTTTTGGTTGGCTGAGTT
131 GGGACCGGACCGATCCCAACTTACGCATTCTGCCTCTCCGGTCGACCTTTTTGGTTGGCTGAGTT
17401393 CT
196 CT
* * *
17401395 CGCACTCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGATCATCCCCA-GTCTAAGCATA-GGAA
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGATCAT-CCCATGTCTAAGCATACAG-A
* * ** *
17401458 GTTCATTCCCAGT-TGAAGATCGAACCAGACCGAGGGTTGGGGTAGCAGGATCGGTAGCAC-CCA
64 GTTCATTCCCAGTCT-AAGATCGAACCAAACCGAAGGTTACGGCAGCAGGATCGGTAGCACGCCA
* * * *
17401521 GGGGGGATCGGCCCGATCCCTAACTTGCGTATTCTGCCTCTCCG
128 GGGGGGACCGGACCGATCCC-AACTTACGCATTCTGCCTCTCCG
17401565 ACCTGCTGAG
Statistics
Matches: 142, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
196 20 0.14
197 119 0.84
198 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (197 bp):
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGATCATCCCATGTCTAAGCATACAGAGT
TCATTCCCAGTCTAAGATCGAACCAAACCGAAGGTTACGGCAGCAGGATCGGTAGCACGCCAGGG
GGGACCGGACCGATCCCAACTTACGCATTCTGCCTCTCCGGTCGACCTTTTTGGTTGGCTGAGTT
CT
Found at i:17401985 original size:26 final size:26
Alignment explanation
Indices: 17401949--17402001 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17401939 GTTGACTTAG
*
17401949 GCATGCGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17401975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17402001 G
1 G
17402002 ATAGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17402316 original size:26 final size:26
Alignment explanation
Indices: 17402280--17402332 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17402270 GTTGGCTTAG
17402280 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17402306 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17402332 G
1 G
17402333 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17403170 original size:26 final size:26
Alignment explanation
Indices: 17403140--17403192 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17403130 GTTGACTTAG
17403140 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17403166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17403192 G
1 G
17403193 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17403506 original size:159 final size:156
Alignment explanation
Indices: 17403166--17403509 Score: 363
Period size: 159 Copynumber: 2.2 Consensus size: 156
17403156 CCCAGTCTAA
**
17403166 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCA-TCCCAGTCTAAGCCCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
** * * * *
17403231 GCACGCAGGGGGGATCCGGCCGATCCTCGGCTTACGCATTCTGCTCTCCGATCGGCTGAGCGCCA
65 GCACGCAGGGGGGATCCGGCCGATCCTCAACTTACGCATTCTCCTCTCCGACCGGCTGACCACCA
* *
17403296 GCACGCTCGTTTTGTGGTTTGGCTTAG
130 GCACGCTCGTTTTGTGGGTTGACTTAG
** * ** * * *
17403323 GCATA-GTGAGTTCATTTCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTTG-
1 GCATACG-GAGTTCATCCCA-GTCTAAGCCCAAACCGGACCGAGGGTTGCGGCAGCAGGA-TCGA
* * * * *
17403386 CAGCACGTAGAGGGGGAT-CGAGCTGATCC-CTAACTTACGCATTCTACCTCTTCGGCCGGTTGA
63 CAGCACGCAG-GGGGGATCCG-GCCGATCCTC-AACTTACGCATTCT-CCTCTCCGACCGGCTGA
*
17403449 CCACCCGCACGCTCGTTTTGTGGGTTGACTTAG
124 CCACCAGCACGCTCGTTTTGTGGGTTGACTTAG
17403482 GCATACGGAGTTCATCCCTAGTCTAAGC
1 GCATACGGAGTTCATCCC-AGTCTAAGC
17403510 ATATGGAGTT
Statistics
Matches: 152, Mismatches: 26, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
156 4 0.03
157 56 0.37
158 28 0.18
159 62 0.41
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATCCCAGTCTAAGCCCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGATCCGGCCGATCCTCAACTTACGCATTCTCCTCTCCGACCGGCTGACCACCAG
CACGCTCGTTTTGTGGGTTGACTTAG
Found at i:17403518 original size:26 final size:26
Alignment explanation
Indices: 17403482--17403534 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17403472 GTTGACTTAG
17403482 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
17403508 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17403534 G
1 G
17403535 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17404075 original size:26 final size:26
Alignment explanation
Indices: 17404046--17404098 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17404036 GTTGACTTAG
17404046 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17404072 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17404098 G
1 G
17404099 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17404609 original size:26 final size:26
Alignment explanation
Indices: 17404579--17404631 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17404569 GTTGACTTAG
*
17404579 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17404605 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17404631 G
1 G
17404632 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17404900 original size:159 final size:153
Alignment explanation
Indices: 17404660--17405021 Score: 379
Period size: 159 Copynumber: 2.3 Consensus size: 153
17404650 TTGCGATACT
* * * * * *
17404660 GGATCGATAGCATGCAGGGGTGATTGGGCCGATCCCCGGCTTATGCATTCCGCCACTCCGACTGG
1 GGATCGACAGCATGCAGGGGGGATCGGGCTGATCACCGGCTTATGCATTCCGCCACTCCGACCGG
* ** * ** *
17404725 CTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
66 CTCAACGCCCGAACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
* * *
17404789 CCCCAGCCAGATCGAGGGTTGTGGCAGC-
130 ----A-CCAGACCGAGGATTGTGACAGCA
* * ** *
17404817 GAGA-CTGACAGCATGCAGAGGGGGATCGGGCTGATCATCGGCTTGTGCATTGTGCCTCTCCGAC
1 G-GATC-GACAGCATGCAG-GGGGGATCGGGCTGATCACCGGCTTATGCATTCCGCCACTCCGAC
* *
17404881 CGGCTCAACGCCCGAACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTA
63 CGGCTCAACGCCCGAACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
17404946 AGATCAGACCGAGGATTGTGACAGCA
128 AGACCAGACCGAGGATTGTGACAGCA
* * *
17404972 GGATCGACAGCATGCAGGGGGGATCGGGCTGGTCCCCGACTTATGCATTC
1 GGATCGACAGCATGCAGGGGGGATCGGGCTGATCACCGGCTTATGCATTC
17405022 TGCCTTTTCA
Statistics
Matches: 169, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
153 27 0.16
154 32 0.19
155 3 0.02
157 2 0.01
158 13 0.08
159 89 0.53
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (153 bp):
GGATCGACAGCATGCAGGGGGGATCGGGCTGATCACCGGCTTATGCATTCCGCCACTCCGACCGG
CTCAACGCCCGAACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
CCAGACCGAGGATTGTGACAGCA
Found at i:17405316 original size:26 final size:27
Alignment explanation
Indices: 17405280--17405336 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
17405270 TGGGTTGACT
17405280 TAAGCATACGGAGTTCA-TCCCCAGTC
1 TAAGCATACGGAGTTCATTCCCCAGTC
*
17405306 TAAGCATACGGAGTTCATTTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCCAGTC
17405333 TAAG
1 TAAG
17405337 ATTGAACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 17 0.59
27 12 0.41
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (27 bp):
TAAGCATACGGAGTTCATTCCCCAGTC
Found at i:17405505 original size:26 final size:26
Alignment explanation
Indices: 17405468--17405520 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17405458 GTTGGCTTAG
*
17405468 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17405494 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17405520 G
1 G
17405521 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.