Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 150 of 402
Found at i:17406227 original size:26 final size:26
Alignment explanation
Indices: 17406190--17406242 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17406180 GTAGACTTAG
17406190 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17406216 GCATAC-AGAGTTCATTCCCAGTTTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
17406242 G
1 G
17406243 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17410302 original size:26 final size:26
Alignment explanation
Indices: 17410250--17410302 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17410240 ATCTTTCTAA
* *
17410250 AAAAATTTTAAAAAATCTCGAACAAT
1 AAAAAGTTTAAAAAATCTCGAAAAAT
*
17410276 AAAAAGTTTCAAAAATCAT-GAAAAAT
1 AAAAAGTTTAAAAAATC-TCGAAAAAT
17410302 A
1 A
17410303 GAAACCGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.60, C:0.09, G:0.06, T:0.25
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTCGAAAAAT
Found at i:17411162 original size:26 final size:26
Alignment explanation
Indices: 17411133--17411185 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17411123 GTTGACTTAG
* *
17411133 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCACCAGTCTAA
*
17411159 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATCACCAGTCTAA
17411185 G
1 G
17411186 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCACCAGTCTAA
Found at i:17411205 original size:626 final size:626
Alignment explanation
Indices: 17410014--17411211 Score: 2002
Period size: 626 Copynumber: 1.9 Consensus size: 626
17410004 TGACACTTGG
* * *
17410014 CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCTCGTAAAGAGCATTTG
1 CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAAAACTCACACCCCCGTAAAGAGCATTTG
**
17410079 AGATTTTAAAGATTTGCTGTTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
66 AGATTTTAAAGATTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
17410144 GTCACAAAATCTTCTCCACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
131 GTCACAAAATCTTCTCCACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * *
17410209 AGGATCACCTCTACTAAATATGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCTCGAACA
196 AGGATCACCTCTACCAAATATGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCAAACA
* *
17410274 ATAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGGGTCGTCTTACCACGAAACTTCACATGAA
261 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCACATGAA
17410339 GGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCGTAGAAATATGA
326 GGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCGTAGAAATATGA
* * *
17410404 AGATGTGCTTGAACCCACCAACCACCCGTTCGATCCCTGGCTTGCGCATCCTGCGTTTCTAGTCG
391 AGATGTGCTTGAACCCACCAACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTAGTCG
* *
17410469 ACTGAGCATCCGTATGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
456 ACTGAGCACCCGCATGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
* * *
17410534 CAAACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACGCAAGGGGG
521 CAAACGAAGTTCATTACCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACGCAAGGGGG
17410599 ATCGGGCCGATCTCTGGCTTGCATATTCTGCCTGTCCCTAT
586 ATCGGGCCGATCTCTGGCTTGCATATTCTGCCTGTCCCTAT
*
17410640 CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTG
1 CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAAAACTCACACCCCCGTAAAGAGCATTTG
* *
17410705 AGATTTTATAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
66 AGATTTTAAAGATTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
**
17410770 GTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
131 GTCACAAAATCTTCTCCACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * * *
17410835 AGGATCACCTCTACCAAATTTTGGGACAAAACTCTTTCTAAAAAAATTTTAACAAATCCCAAACC
196 AGGATCACCTCTACCAAATATGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCAAACA
* *
17410900 ACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAA
261 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCACATGAA
* *
17410965 GGCTTAGGGGACCATTGTATGAATTTGCACA-CCATAAAAATGGCATTGGCATGGTAGAAATATG
326 GGCTTAGGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCATCGTAGAAATATG
* * *
17411029 AAGATGTGCTTGAACCCACCTATCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTC
390 AAGATGTGCTTGAACCCACCAACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTAGTC
* * * *
17411094 GACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
455 GACTGAGCACCCGCATGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
* *
17411159 GCATACGAAGTTCATTACCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCA
520 GCAAACGAAGTTCATTACCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
17411212 ATAGGATTGG
Statistics
Matches: 529, Mismatches: 42, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
626 528 1.00
627 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (626 bp):
CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAAAACTCACACCCCCGTAAAGAGCATTTG
AGATTTTAAAGATTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTCTCCACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACCTCTACCAAATATGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCAAACA
ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCACATGAA
GGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCGTAGAAATATGA
AGATGTGCTTGAACCCACCAACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTAGTCG
ACTGAGCACCCGCATGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
CAAACGAAGTTCATTACCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACGCAAGGGGG
ATCGGGCCGATCTCTGGCTTGCATATTCTGCCTGTCCCTAT
Found at i:17411639 original size:157 final size:159
Alignment explanation
Indices: 17411287--17411659 Score: 410
Period size: 159 Copynumber: 2.4 Consensus size: 159
17411277 CGACTGAGAA
* * * * *
17411287 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACT
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAAAT
** * *
17411352 GGACCAAGAGTTCTGGCAGTGGGACTGACAGCACGAAGAGGGGGACTGGGCTGATCCCCGGCTTG
66 GGACCAAGAGTTCTGGCAGCAGGACTGACAGCACGAAGAGGGGGACTGAGCTGATCCCCGGCTTA
* * *
17411417 CGCATTATGCCTTTTCGACCTGCTCAACG
131 CGCATTATGCCTCTCCGACCGGCTCAACG
* ** * * * ***
17411446 CCTGCACGCTCGTTTCATGGGTTAACTTAGGGATACGGAGTTCATTCCCTATCTAAGATTGAAAT
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAAAT
* * * * * *
17411511 GGACCGAGGGTTGTGGCAGCAGGATTGACAGCATGCAG-GGGGGA-TCGAGCTGATCCCCGGC-T
66 GGACCAAGAGTTCTGGCAGCAGGACTGACAGCACGAAGAGGGGGACT-GAGCTGATCCCCGGCTT
* * * *
17411573 ACGCATTTTGCCTCTCCGACCGGTTGAGCG
130 ACGCATTATGCCTCTCCGACCGGCTCAACG
* * *
17411603 CCCGCATGCTTGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17411660 CGTACAAAGT
Statistics
Matches: 173, Mismatches: 40, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
157 72 0.42
158 20 0.12
159 81 0.47
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAAAT
GGACCAAGAGTTCTGGCAGCAGGACTGACAGCACGAAGAGGGGGACTGAGCTGATCCCCGGCTTA
CGCATTATGCCTCTCCGACCGGCTCAACG
Found at i:17412385 original size:26 final size:26
Alignment explanation
Indices: 17412355--17412407 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17412345 GTTGACTGAG
*
17412355 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17412381 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17412407 G
1 G
17412408 GTCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17412712 original size:159 final size:157
Alignment explanation
Indices: 17412380--17412873 Score: 487
Period size: 158 Copynumber: 3.1 Consensus size: 157
17412370 CCCCAGTCTA
* * *
17412380 AGCATACGAAGTTCATTCCCAGTCTAAGGTCAGACTAGACCGAGGGTTGCA-GCAGCAGGATCGT
1 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-AGGCAGCAGGATCGA
* * * * *
17412444 TAGCACGCAGGGGGGATCAGGCTGATCCCCTACTTGCGTATTCTGTCTCTCCGACCGGCTGAGCG
65 TAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * *
17412509 CCCGCATGCTTGTTTCATGGGCTGGGTT
130 CCCGCACGCTCGTTTCATGGGTTGGCTT
* * * * ** * * *
17412537 AGACATAGGGATTTCATT-CCATGTGTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGACC
1 AG-CATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGAGGCAGCAGGATC
* * * * * *
17412600 GATAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTCGACCGGCTCA
63 GATAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGA
* * *
17412665 GTGCCCGTACGCTCGTTTCATGGGTTGACTT
127 GCGCCCGCACGCTCGTTTCATGGGTTGGCTT
* * * *
17412696 ATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG-TGAGGTAGCAGGATTGA
1 A-GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCAGGATCGA
* * *
17412760 CCA-CATGCAGGGGGGGA-CTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGA
65 -TAGCACGCA-GGGGGGATC-GGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGA
* * *
17412823 GCACCCGCACACTCGTTTCGTGGGTTGGCTT
127 GCGCCCGCACGCTCGTTTCATGGGTTGGCTT
*
17412854 AGGCATACGGAGTTCATTCC
1 A-GCATACGAAGTTCATTCC
17412874 ATGTATAAGC
Statistics
Matches: 267, Mismatches: 59, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 157 0.59
159 100 0.37
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCAGGATCGAT
AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTT
Found at i:17414020 original size:26 final size:25
Alignment explanation
Indices: 17413983--17414034 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
17413973 GTTGACTTAG
17413983 GCATACAGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCC-CAGTCTAA
*
17414009 GCATAC-GAAGTTCATTCCAGTCTAA
1 GCATACAG-AGTTCATCCCAGTCTAA
17414034 G
1 G
17414035 ATCAGATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:17414511 original size:26 final size:26
Alignment explanation
Indices: 17414482--17414534 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17414472 GTTGGCTTAG
17414482 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
**
17414508 GCATATTGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17414534 G
1 G
17414535 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17415745 original size:26 final size:26
Alignment explanation
Indices: 17415716--17415768 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17415706 GTTGGCTTAG
*
17415716 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17415742 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17415768 G
1 G
17415769 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17416384 original size:26 final size:26
Alignment explanation
Indices: 17416348--17416400 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17416338 GTCGGCTTAG
*
17416348 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17416374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17416400 G
1 G
17416401 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17416533 original size:183 final size:184
Alignment explanation
Indices: 17416190--17416558 Score: 469
Period size: 183 Copynumber: 2.0 Consensus size: 184
17416180 GTTGACTTAG
*
17416190 GCATATGGAGTTCATTCCCAGTCTAAGAATAGACTAGACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGAATAGACTAGACCGAGGGTTGCGATAGCAGGATCGACA
* * * * * ** * *
17416255 GCATGTAGGGGGGATCGAGCTGATCCTCGGCTTACGCATTCTACCTCTTCAGTCGGTTGAGCGCC
66 GCATGCAGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTACCTCTTCAGCCGACTAAGCGAC
*
17416320 CGCGCACCTGTTTCGTGGGTCGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
131 CGCGCACCTGTTTCGTGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
17416374 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGA-TCGGATCGAGGGTTGTGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGAAT-AGACT-AGACCGAGGGTTGCGATAGCAGGATCGA
* * * * *
17416437 TAGCATGCA-GGGGGATCGGGCCGATCCCCGACTTGCGTATTCTACCTCTTCGGCCGACTAAGC-
64 CAGCATGCAGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTACCTCTTCAGCCGACTAAGCG
*
17416500 ACC-CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 ACCGCGCAC-CT-GTTTCGTGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17416557 GC
1 GC
17416559 CCCAGCCGGA
Statistics
Matches: 159, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
181 5 0.03
182 4 0.03
183 91 0.57
184 59 0.37
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAATAGACTAGACCGAGGGTTGCGATAGCAGGATCGACA
GCATGCAGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTACCTCTTCAGCCGACTAAGCGAC
CGCGCACCTGTTTCGTGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17416741 original size:26 final size:26
Alignment explanation
Indices: 17416711--17416763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17416701 ATTGACTTAG
*
17416711 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17416737 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17416763 G
1 G
17416764 ATCGAACGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17417263 original size:26 final size:26
Alignment explanation
Indices: 17417212--17417264 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17417202 GTTGGCTTAG
*
17417212 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
17417238 GCATATGGAGTTCATTCCCAT-CCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
17417264 G
1 G
17417265 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17423883 original size:26 final size:26
Alignment explanation
Indices: 17423853--17423905 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17423843 GTTGACTTAG
*
17423853 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
17423879 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17423905 G
1 G
17423906 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17424182 original size:159 final size:157
Alignment explanation
Indices: 17423879--17424382 Score: 534
Period size: 159 Copynumber: 3.2 Consensus size: 157
17423869 CCCAATCTAA
* **** * * *
17423879 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCAGACCGAGGGTTGC-GATAGCAGGATTGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCGGACCGAGGGTTACAG-CAGCAGGA-TGG
* * *
17423942 CAGCACACAGA-GGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAG-TCGAG
63 CAGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTC-AG
*
17424005 CGCCCGCACGCCCGTTTCGTGGGTTCGCTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTT-GCTTAG
* * * * *** *
17424037 GCATAGGGAGTTCATTCCATCTCTAAGCCCTAG-TCGGACGGAGGGTTGTGGCAGCGGGACTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCGGACCGAGGGTTACAGCAGCAGGA-TGGC
* * * * *
17424101 AGAACACAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGTG
64 AGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCG
* *
17424166 CCCGGACGCTCATTTCGTGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTG-CTTAG
** * * *
17424196 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCATGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCGGACCGAGGGTTACAGCAGCAGGAT-GGC
* * * *
17424260 AGCACGCAGGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
64 AGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCG
*
17424325 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTT-GCTTAG
17424355 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
17424383 ATACGGAGTT
Statistics
Matches: 284, Mismatches: 51, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.01
158 57 0.20
159 218 0.77
160 6 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAGGGTTACAGCAGCAGGATGGCAG
CACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCC
CGCACGCTCGTTTCGTGGGTTGCTTAG
Found at i:17424406 original size:26 final size:26
Alignment explanation
Indices: 17424355--17424407 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17424345 GTTGGCTTAG
**
17424355 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATAACTAA
17424381 GCATACGGAGTTCATTCCCA-AACTAA
1 GCATACGGAGTTCATT-CCATAACTAA
17424407 G
1 G
17424408 ATCAGGCCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATAACTAA
Found at i:17425117 original size:158 final size:159
Alignment explanation
Indices: 17424787--17425163 Score: 472
Period size: 159 Copynumber: 2.4 Consensus size: 159
17424777 CAGACCAGAT
* ** * *
17424787 CGAGGGTTGGGGCAGTAGGATCGGCAGCACACAGGGGGGACCGGGTCGATCCTCGGCTTGCACAT
1 CGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGGGGACCGGGTCGATCCTCGGCTTACACAT
* * * * *
17424852 TCTGCCTCTCCGGTCCGTTGAGCACCCTACATGCCCATTTCATGGGTTGGCTTAGTCATAGGGAG
66 TCTGCCTCTCCGCTCCGTTGAGCACCCTACACGCCCATTTCATGGGTTCGCTAAGGCATAGGGAG
**
17424917 TTCATTCCATGTCTAAGCCCCAGCCGGGC
131 TTCATTCCATGTCTAAGCCCCAGCCGAAC
*
17424946 CGAGGGTTGTGGCAGCGGGATCGGCAGCACATC-GAGGGGACCGGGTCGATCCTCGGCTTACGCA
1 CGAGGGTTGTGGCAGCGGGATCGGCAGCACA-CAGAGGGGACCGGGTCGATCCTCGGCTTACACA
* * * * **
17425010 TTCTGCCTCTTCGACT-GGTTGAGCGCCC-GCACGCCCATTTTGTGGGTTCGCTAAGGCATAGGG
65 TTCTGCCTCTCCG-CTCCGTTGAGCACCCTACACGCCCATTTCATGGGTTCGCTAAGGCATAGGG
17425073 AGTTCATTCCATGTCTAAGCCCCAGCCGAAC
129 AGTTCATTCCATGTCTAAGCCCCAGCCGAAC
* * ** * * *
17425104 TGAGGGTTGTGGCAGCGGGACCAACAGCACACAGAGGGGGATCGAGCCGATCCTCGGCTT
1 CGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGA-GGGGACCGGGTCGATCCTCGGCTT
17425164 GTACATTATG
Statistics
Matches: 188, Mismatches: 26, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
157 1 0.01
158 86 0.46
159 99 0.53
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGGGGACCGGGTCGATCCTCGGCTTACACAT
TCTGCCTCTCCGCTCCGTTGAGCACCCTACACGCCCATTTCATGGGTTCGCTAAGGCATAGGGAG
TTCATTCCATGTCTAAGCCCCAGCCGAAC
Found at i:17426140 original size:158 final size:158
Alignment explanation
Indices: 17425776--17426277 Score: 625
Period size: 158 Copynumber: 3.2 Consensus size: 158
17425766 CCCAATCTAA
* ** *
17425776 GCATATGGAGTTCATTCCA-GTCTAAG-ATCAGACC-AGACCGAGGGTTGGGGCAGCAGGATCGA
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGA-ACCGAGGGTTGTGGCAGCAGGATCGA
* * * *
17425838 TAGCACG-CAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGC
64 CAGCACGTC-GGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGC
* * *
17425902 ACCCTGCACACCGATTTTGTGGGTTGGCTTAG
128 GCCC-GCACGCCCATTTTGTGGGTTGGCTTAG
* ** * * *
17425934 TCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGGCTGAGGGTTGTGGCAGCGGGATCGGCA
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGATCGACA
* *
17425999 GCACGTCGGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
66 GCACGTCGGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
**
17426064 CGCACGCCCATTTCATGGGTTGGCTTAG
131 CGCACGCCCATTTTGTGGGTTGGCTTAG
* *
17426092 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGACAGCAGGATTGACA
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGATCGACA
* ** * * * *
17426157 GCACGTAGGGGGGACCGAACCGATCCTCGGTTTATGCATTCTGGCTCTCCGGTCGGCTGAGTGCC
66 GCACGTCGGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
** *
17426222 CGCACGCTTATTTTGTAGGTTGGCTTAG
131 CGCACGCCCATTTTGTGGGTTGGCTTAG
* *
17426250 GCATACGGAGTTCATTCCACGTCTAAGC
1 GCATAGGGAGTTCATTCCATGTCTAAGC
17426278 ATATGGAGTT
Statistics
Matches: 295, Mismatches: 45, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
158 202 0.68
159 89 0.30
160 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTCGGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCCCATTTTGTGGGTTGGCTTAG
Found at i:17426286 original size:26 final size:26
Alignment explanation
Indices: 17426250--17426302 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17426240 GTTGGCTTAG
17426250 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17426276 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17426302 G
1 G
17426303 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17427009 original size:26 final size:26
Alignment explanation
Indices: 17426972--17427024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17426962 GTTGACTTAG
*
17426972 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17426998 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17427024 G
1 G
17427025 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17427478 original size:158 final size:156
Alignment explanation
Indices: 17426998--17427499 Score: 519
Period size: 158 Copynumber: 3.2 Consensus size: 156
17426988 CCCAGTCTAA
* * *
17426998 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGA-CTGGATCGAGGGTTACGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATC-GGATCGAGGGTTACGGCAGTAGGATCGA
* * * * * * * *
17427061 CAACACGTAGGGGGGACCGAGCCGATCCCTGGCTTACGCATTCTACCTCTCCAACCGAATGAGCG
64 CAGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCG-CTGAGCG
* *
17427126 CCTGCACGCCCGTTTCGTGGGTTGGCTAAG
128 CC-GCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * *
17427156 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGATCGAGGGTTACGGCAGTAGGATCGAC
* ** * * * * *
17427220 AGCACGCAGAGGGGGACCAGGCCGAA-CCCCAGCTTGCGCATTATGCCTATCCGGTCGGCTTAGC
65 AGCACGCAG-GGGGGACCGGGCC-AATCCCTGGCTTGCGCATTCTGCCTCTCCAG-CCGCTGAGC
* * *
17427284 GCCCGTACGCTCATTTCGTGGGTTGACTTAG
127 G-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17427315 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTACGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGTAGGATCGAC
* * * * *
17427379 AGCATGCAGGGGGGATCGGGCCAATCCCTGGCTTGCGAATTCTGCCTCTCCTGCCTGCTGAGTGC
65 AGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCAGCC-GCTGAGCGC
17427444 TCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 -CGCACGCTCGTTTCGTGGGTTGGCTTAG
17427473 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17427500 CATATGGAGT
Statistics
Matches: 276, Mismatches: 55, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
157 10 0.04
158 142 0.51
159 116 0.42
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCGCTGAGCGCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17427509 original size:26 final size:26
Alignment explanation
Indices: 17427473--17427525 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17427463 GTTGGCTTAG
17427473 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17427499 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17427525 G
1 G
17427526 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17427875 original size:26 final size:26
Alignment explanation
Indices: 17427839--17427891 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17427829 GTTGACTTAG
17427839 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17427865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17427891 G
1 G
17427892 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17428237 original size:26 final size:26
Alignment explanation
Indices: 17428207--17428259 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17428197 GTTGACTTAG
17428207 GCATACGGAGTTC-ATCCCCAGTCTAA
1 GCATACGGAGTTCAAT-CCCAGTCTAA
17428233 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
17428259 G
1 G
17428260 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:17428334 original size:368 final size:353
Alignment explanation
Indices: 17427445--17428576 Score: 1098
Period size: 368 Copynumber: 3.2 Consensus size: 353
17427435 GCTGAGTGCT
* * *
17427445 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAG
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAG
* ** *
17427509 TTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGCGACAGTAGGACTAGTAGCAAGATCGA
65 TTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGACAGCAGGA-TAG-A-C-AG--C-A
* * *
17427574 CAGCATGTAGGGGGACTGGGCCGATCCTCGGTTTG-GACATTCTACCTCTCCGATTGGCTGAGCG
122 C-GCA-G--GGGGGACCGGGCCGATCCTCGGCTTGCG-CATTCTGCCTCTCCGATTGGCTGAGCG
* *
17427638 CCCGCACTCTCGTTTCATGGGTTGGCTTAGGCATT-CGGAGTTCATTCCATGTCTAAGCCCTAGC
182 CCCGCA-TCTCGTTTCGTGGGTTGGCTTAGGC-TTACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
17427702 CGGATCGAAGATTGTGGCAACAGGACCGGCAGCGAGATCGACAGCGCGTAGAGGGGGATCGGGCT
245 CGGATCGAAGATTGTGGCAACAGGACCGGCAGCGAGATCGACAGCACGTAGAAGGGGATCAGGCT
* * *
17427767 GATCCTCGGCTTACGTATTATGCCTCTCCGGCCGGTTGAGCGCC
310 GATCCCCGGCTTACGCATTATGCCTCTCCGACCGGTTGAGCGCC
*
17427811 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * * * *
17427876 TCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGG
66 TCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCGACAGCAGGATAGACAGCACGCAGGGG
* * ** * *
17427941 GGATCGGGCCGATCCCCAACTTGCGCATTCTGCTTCTCCGATTGGCTGAGCGCCCGCATGCTCAT
130 GGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCAT-CTCGT
* * * * *
17428006 TTTGTGGGTTGGCTTAGGCTTATGGAGTTCATTTCGTGTCTAAGCCCCAGTCGGA-CTGACAG-T
194 TTCGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC-GA-AGAT
** * * * *
17428069 TGTGGCAGTAGGACCGGTAGTGGGTTCGACAGCAC-TCAGAAGGGGATCAGGCTGATCCCCGGCT
257 TGTGGCAACAGGACCGGCAGCGAGATCGACAGCACGT-AGAAGGGGATCAGGCTGATCCCCGGCT
*
17428133 TACGCATTATGCCTCTCCGATCGGCCTCTCCGACAGGCTAAGCACC
321 TACGCATTATGCCTCTCCGACCGG--T-T--G--A-GC---G--CC
* *
17428179 CGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * *
17428244 TCAATCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATTGACAGCACGCAGGGG
66 TCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGACAGCAGGATAGACAGCACGCAGGGG
* * * * * * * *
17428309 GGACCAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCACCCACACACCCGT
130 GGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCA-TCTCGT
* * * * * *
17428374 TTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCAAAGCCCCAGCC-GAACCAAGGGTT
194 TTCGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAA-GATT
* * * * **
17428438 GTGGC-A-ATG---GG-ATCG-G--C-A-A-CATGTAGAGGGGGATC-GAGCTGATCCCCAACTT
258 GTGGCAACAGGACCGGCAGCGAGATCGACAGCACGTAGAAGGGGATCAG-GCTGATCCCCGGCTT
* * * * *
17428490 GCGTATTATGCCTCTCTGACCGGCTCAGCGCC
322 ACGCATTATGCCTCTCCGACCGGTTGAGCGCC
* * * *
17428522 CGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
17428577 ATCAGACCGG
Statistics
Matches: 648, Mismatches: 90, Indels: 79
0.79 0.11 0.10
Matches are distributed among these distances:
343 55 0.08
345 1 0.00
348 2 0.00
349 1 0.00
353 1 0.00
354 5 0.01
355 177 0.27
356 47 0.07
357 4 0.01
358 4 0.01
359 3 0.00
360 2 0.00
361 1 0.00
362 5 0.01
363 5 0.01
364 1 0.00
365 4 0.01
366 99 0.15
367 7 0.01
368 223 0.34
369 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (353 bp):
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGACAGCAGGATAGACAGCACGCAGGGGG
GACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCATCTCGTTT
CGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGATTGTG
GCAACAGGACCGGCAGCGAGATCGACAGCACGTAGAAGGGGATCAGGCTGATCCCCGGCTTACGC
ATTATGCCTCTCCGACCGGTTGAGCGCC
Found at i:17428693 original size:158 final size:157
Alignment explanation
Indices: 17428233--17428734 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 157
17428223 CCCAGTCTAA
* * *
17428233 GCATACGGAGTTCAATCCCA-GTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATTGAC
1 GCATACGGAGTTC-ATTCCATGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
17428297 AGCACGCAGGGGGGACCAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTTC-GACTGGCTGAGCA
65 AGCATGCAGGGGGGATC-GGGCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGAC-GGCTGAGCG
* * * *
17428361 CCCACACACCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * *** *
17428391 GCGTAGGGAGTTCATTCCATGTCAAAGCCCCAG-CCGAACCAAGGGTTGTGGCAATGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
17428455 AACATGTAGAGGGGGATCGAGCTGATCCCCAACTTGCGTATTATGCCTCT-CTGACCGGCTCAGC
65 AGCATGCAG-GGGGGATCGGGC-GATCCTCAGCTTGCGCATTCTGCCTCTCCGGA-CGGCTGAGC
* *
17428519 GCCCGTACGCTCGTTTCATGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
17428550 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGAC
** *
17428614 AGCATGCAGGGGGGATCGGGTCGATCCTCAGCTTATGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCATGCAGGGGGGATCGGG-CGATCCTCAGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGC
*
17428679 CCGCATGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
**
17428708 GCATACATAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17428735 CATGCAGAGT
Statistics
Matches: 268, Mismatches: 65, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 143 0.53
159 119 0.44
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGGGGGATCGGGCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17428899 original size:343 final size:321
Alignment explanation
Indices: 17428798--17429448 Score: 490
Period size: 343 Copynumber: 2.0 Consensus size: 321
17428788 TAGGATCGAT
* *
17428798 AGCACGCAG-GGGGTGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGC
1 AGCACGCAGAGGGG-GACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGC
* * *
17428862 GCCCGCACGCAT-GTTTCCTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
65 GCCCGCACGC-TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-AT-C-
* * *
17428926 GAGTTCAATCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATC-AGTAGCACGC
126 -AG----------A-C------C-----GGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGC
* * * * * * *
17428990 AGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTACCTTTCCGGCCGACTGAGCGCCCGTACG
167 AGGGGGGATCGGGTCGATCCTCAGCTTATGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG
* * ** ** * *
17429055 CCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC--CCCAG-CCAGTCC
232 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATCAGAGTTCATTCC
* ** * *
17429117 GAGGGT-TGTGGCAGCAGGACTGGC
297 CAGTCTAAGTGCCAGCAGGACTGGC
* * * * * *
17429141 AGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGGTCAGTG
1 AGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGCG
* * *
17429206 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * * * * *
17429271 GGACCGAGGGTTGCGGCAGCAGGATAGACAGCCCGTAGGGCGGCACCGGGCCGATCCCCAGCTTG
131 GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGG-GGGATCGGGTCGATCCTCAGCTT-
* * * * *
17429336 CT-CATTCTGCCTCTCTGGTCTGCTGAGCGCCCGCACGCTCATTTCGTGTGTTGGCTTAGGCATA
194 ATGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * *
17429400 CAGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAATCTAAGT
259 CAGAGTTCATTCCATGTCTAAGCAT-CAGAGTTCATTCCCAGTCTAAGT
17429449 TTTTGAGCCA
Statistics
Matches: 251, Mismatches: 47, Indels: 40
0.74 0.14 0.12
Matches are distributed among these distances:
317 32 0.13
318 90 0.36
321 3 0.01
322 8 0.03
323 2 0.01
328 1 0.00
329 1 0.00
339 2 0.01
341 1 0.00
342 3 0.01
343 104 0.41
344 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (321 bp):
AGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCAGCTTAT
GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACA
GAGTTCATTCCATGTCTAAGCATCAGAGTTCATTCCCAGTCTAAGTGCCAGCAGGACTGGC
Found at i:17428919 original size:185 final size:183
Alignment explanation
Indices: 17428550--17429104 Score: 677
Period size: 184 Copynumber: 3.0 Consensus size: 183
17428540 GTTGACTTAG
* * * * *
17428550 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGTAGGATCGATA
* * * *
17428615 GCATGCAGGGGGGATCGGGTCGATCCTCAGCTTATGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
* **
17428680 CGCATGCTCGTTTCATGGGTTGGCTTAGGCATACATAGTTCATTCCATGTCTAA
131 CGCACGCT-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
17428734 GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGTAGGATCGATA
* * * * *
17428799 GCACGCAGGGGGTGACCGGG-CTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGCG
66 GCACGCAGGGGG-GATCGGGTC-GATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCG
* * *
17428863 CCCGCACGCATGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
129 CCCGCACGC-TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * * *
17428919 GCATACAGAGTTCAATCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATC-AGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGTAGGATCGA-T
* * *
17428983 AGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTACCT-TTCCGGCCGACTGAGCG
65 AGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTT-CGGTCGGCTGAGCG
* * ** *
17429047 CCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCCGCACG-CTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17429103 GC
1 GC
17429105 CCCAGCCAGT
Statistics
Matches: 315, Mismatches: 47, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
183 5 0.02
184 153 0.49
185 153 0.49
186 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGTAGGATCGATA
GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
CGCACGCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17428929 original size:26 final size:26
Alignment explanation
Indices: 17428893--17428945 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17428883 GTTGACTTAG
* *
17428893 GCATACGGAGTTC-ATCCCCAGTCTAA
1 GCATACAGAGTTCAAT-CCCAATCTAA
17428919 GCATACAGAGTTCAATCCCAATCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
17428945 G
1 G
17428946 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAATCTAA
Found at i:17429186 original size:686 final size:687
Alignment explanation
Indices: 17428188--17429447 Score: 1805
Period size: 686 Copynumber: 1.8 Consensus size: 687
17428178 CCGTACGCTC
*
17428188 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAATCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAATCCCA
* *
17428253 GTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATTGACAGCACGCAGGGGGGACCAGGC
66 ATCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATAGACAGCACGCAGGGGGGACCAGGC
* * * *
17428318 CAATCCTCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCACCCACACACCCGTTTCGTGGGT
131 CAATCCTCGGCTTACGCATTCTACCTCTTCGACCGACTGAGCACCCACACACCCGTTTCGTGGGT
* **
17428383 TGGCTTAGGCGTAGGGAGTTCATTCCATGTCAAAGCCCCAGCCGAACCAAGGGTTGTGGCAATGG
196 TGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCCGAACCAAGGGTTGTGGCAACAG
* * * * *
17428448 GATCGGCAACATGTAGAGGGGGATCGAGCTGATCCCCAACTTGCGTATTATGCCTC-TCTGACCG
261 GATCGGCAACACGTAGAGGGGGACCGAGCCGATCCCCAACTTACGCATTATGCCTCTTC-GACCG
* *
17428512 GCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
325 GCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
17428577 ATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCATGCAGGG-GGGATCGGGTCGATCC
390 ATCAGACCGGACCGAGGGTTACGGCAGCAGGATAGACAGCACGCAGGGCGGCACCGGGCCGATCC
* * *
17428641 TCAGCTT-ATGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCT
455 CCAGCTTGAT-CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCT
* * * *
17428705 TAGGCATACATAGTTCATTCCATGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCA
519 TAGGCATACAGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCA
17428770 GACTGAGGGTTACGATAGTAGGATCGATAGCACGCAGGGGGTGACCGGGCTGATCCCCGGCTTGC
584 GACTGAGGGTTACGATAGTAGGATCGATAGCACGCAGGGGGTGACCGGGCTGATCCCCGGCTTGC
17428835 GCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCAT
649 GCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCAT
*
17428874 GTTTCCTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAATCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAATCCCA
* * * * * * *
17428939 ATCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCAG-TAGCACGCAGGGGGGATCGGG
66 ATCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGAT-AGACAGCACGCAGGGGGGACCAGG
* * * * ** * *
17429003 TCGATCCTCGGCTTACGCATTCTACCT-TTCCGGCCGACTGAGCGCCCGTACGCCCGTTTTGTGG
130 CCAATCCTCGGCTTACGCATTCTACCTCTT-CGACCGACTGAGCACCCACACACCCGTTTCGTGG
* * * *
17429067 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-AGTCCGAGGGTTGTGGCAG
194 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCCGA-ACCAAGGGTTGTGGCAA
* * * *
17429131 CAGGA-CTGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGG
258 CAGGATC-GGCAACACGTAGAGGGGGACCGAGCCGATCCCCAACTTACGCATTATGCCTCTTCGA
* * * * *
17429195 TCGGGTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCT
322 CCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
17429260 AAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATAGACAGCCCGTAGGGCGGCACCGGGCCGA
387 AAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATAGACAGCACGCAGGGCGGCACCGGGCCGA
* * * * *
17429325 TCCCCAGCTTGCTCATTCTGCCTCTCTGGTCTGCTGAGCGCCCGCACGCTCATTTCGTGTGTTGG
452 TCCCCAGCTTGATCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGG
*
17429390 CTTAGGCATACAGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAATCTAAG
517 CTTAGGCATACAGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAATCTAAG
17429448 TTTTTGAGCC
Statistics
Matches: 499, Mismatches: 68, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
685 4 0.01
686 373 0.75
687 121 0.24
688 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (687 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAATCCCA
ATCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATAGACAGCACGCAGGGGGGACCAGGC
CAATCCTCGGCTTACGCATTCTACCTCTTCGACCGACTGAGCACCCACACACCCGTTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCCGAACCAAGGGTTGTGGCAACAG
GATCGGCAACACGTAGAGGGGGACCGAGCCGATCCCCAACTTACGCATTATGCCTCTTCGACCGG
CTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGAGGGTTACGGCAGCAGGATAGACAGCACGCAGGGCGGCACCGGGCCGATCCC
CAGCTTGATCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTA
GGCATACAGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGA
CTGAGGGTTACGATAGTAGGATCGATAGCACGCAGGGGGTGACCGGGCTGATCCCCGGCTTGCGC
ATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCAT
Found at i:17429226 original size:159 final size:159
Alignment explanation
Indices: 17428955--17429423 Score: 450
Period size: 159 Copynumber: 2.9 Consensus size: 159
17428945 GATCGGATCG
* * * * * * * * *
17428955 GACCGAGGGTTGCGACAGTAGGATCAG-TAGCACGCAGGG-GGGATCGGGTCGATCCTCGGCTTA
1 GACCGAGGGTTGCGGCAGCAGGAT-AGACAGCACGTAGGGCGGCACCGGGCCGATCCCCAGCTTA
* * * * * * * * * * *
17429018 CGCATTCTACCTTTCCGGCCGACTGAGCGCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAG
65 CGCATTATGCCTCTCTGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
17429083 GGAGTTCATTCCATGTCTAAGCCCCAG-CCA
130 GGAGTTCATTCCA-GTCTAAGCACCAGACCA
* * * *
17429113 GTCCGAGGGTTGTGGCAGCAGGACT-GGCAGCACGTAGAGG-GGGACCGGGCCGATCCCC-GACT
1 GACCGAGGGTTGCGGCAGCAGGA-TAGACAGCACGTAG-GGCGGCACCGGGCCGATCCCCAG-CT
* * * *
17429175 TACGCATTATGCCTCT-TCGGTCGGGTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCA
63 TACGCATTATGCCTCTCT-GGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
* *
17429239 TACGGAGTTCATTCCCAGTCTAAG-ATCAGACCG
127 TACGGAGTTCATT-CCAGTCTAAGCACCAGACCA
* *
17429272 GACCGAGGGTTGCGGCAGCAGGATAGACAGCCCGTAGGGCGGCACCGGGCCGATCCCCAGCTTGC
1 GACCGAGGGTTGCGGCAGCAGGATAGACAGCACGTAGGGCGGCACCGGGCCGATCCCCAGCTTAC
* * * * * * *
17429337 TCATTCTGCCTCTCTGGTCTGCTGAGCGCCCGCACGCTCATTTCGTGTGTTGGCTTAGGCATACA
66 GCATTATGCCTCTCTGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
17429402 GAGTTCATTCCACGTCTAAGCA
131 GAGTTCATTCCA-GTCTAAGCA
17429424 TACGGAGTTC
Statistics
Matches: 254, Mismatches: 44, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
157 1 0.00
158 37 0.15
159 210 0.83
160 6 0.02
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGCGGCAGCAGGATAGACAGCACGTAGGGCGGCACCGGGCCGATCCCCAGCTTAC
GCATTATGCCTCTCTGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCAGTCTAAGCACCAGACCA
Found at i:17429445 original size:26 final size:26
Alignment explanation
Indices: 17429395--17429447 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17429385 GTTGGCTTAG
*
17429395 GCATACAGAGTTCATTCCACGTCTAA
1 GCATACAGAGTTCATTCCACATCTAA
*
17429421 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACAGAGTTCATTCCAC-ATCTAA
17429447 G
1 G
17429448 TTTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACATCTAA
Found at i:17430623 original size:137 final size:137
Alignment explanation
Indices: 17430367--17430632 Score: 347
Period size: 137 Copynumber: 1.9 Consensus size: 137
17430357 TGTGGCAGCG
*
17430367 GGACCGACAGCACGTAGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGG
1 GGACCGACAGCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGG
* * * *
17430432 CTCAGCACCCATACGCTCATTTCGTGGGTTGACTTAGGTATATGAAGTTTATTCCCA-GTCTAAG
66 CTCAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAG
17430496 ATCAGATA
130 ATCAGATA
* * * *
17430504 GGACCGACAGCACGCAGAGGGGATCGAGCCGGTCC-CTGGCTTGTGCATTCTGCCTCTCCGGCCG
1 GGACCGACAGCACGCAGAGGGGACCGAGCCGATCCTC-GGCTTGCGCATTATGCCTCTCCGGCCG
* * * * * * * *
17430568 GTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCTCAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG
17430633 CATACGGAGT
Statistics
Matches: 110, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
136 4 0.04
137 106 0.96
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (137 bp):
GGACCGACAGCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGG
CTCAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGA
TCAGATA
Found at i:17430642 original size:26 final size:26
Alignment explanation
Indices: 17430606--17430658 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17430596 GTTGGCTTAG
17430606 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17430632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17430658 G
1 G
17430659 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17431264 original size:158 final size:158
Alignment explanation
Indices: 17430853--17431290 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 158
17430843 GCAGATCGAT
* * * * *
17430853 AGCATGCAGGGGGGACCAGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCAGTCGGTTGAGCGC
1 AGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
17430918 CCATACGCTCGTTTCATGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGACCAAGCCA
66 CCATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAGCCA
* ** * *
17430983 GACTGAGGGTTGTGGCAGCGGGACTGAT
131 GACCGAGGGTTGCAGCAGCAGGACTGAC
* * * * ** * * * * * *
17431011 AGCACGCAGAGAGGGACCGGGTCGATCCCCGATTTGCACATTATGCCTCTTCGGCTGGCTTAGTG
1 AGCATGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
17431076 CCCGTACGCTCGTTTCGTGGGTTGAG-TTAGGCTTACGGAGTTCATTCCCA-GTCTAAGATC-AG
65 CCCATACGCTCGTTTCATGGGTTG-GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAAG
* * * * *
17431138 ATCGGACCGAGGGTTGCAGTAGTAGGATTGAC
128 -CCAGACCGAGGGTTGCAGCAGCAGGACTGAC
* * * * *
17431170 AGCATGCAGGGGGGATCAGACCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCAC
1 AGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
17431235 CCATACGCTCGTTTCATGGGTTGGCTTAGGCATACGAATTTCATTCCATGTCTAAG
66 CCATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17431291 CATACGGAGT
Statistics
Matches: 219, Mismatches: 55, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 4 0.02
158 95 0.43
159 116 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
CCATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAGCCA
GACCGAGGGTTGCAGCAGCAGGACTGAC
Found at i:17431295 original size:26 final size:26
Alignment explanation
Indices: 17431264--17431316 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17431254 GTTGGCTTAG
*
17431264 GCATACGAATTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
17431290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17431316 G
1 G
17431317 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17431959 original size:159 final size:159
Alignment explanation
Indices: 17431607--17432160 Score: 494
Period size: 159 Copynumber: 3.5 Consensus size: 159
17431597 TCTCCGACCG
* * * * ** * * *
17431607 GCCTCTCCGGCCGGCTGAGCACCCACACGCTTGTTTTGAGGGTTGTCTTAGGCATACGGAGTTCA
1 GCCTCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * * * ** * * * * *
17431672 TCCCCA-GTCTAAGATC-GAACCAGACTGAGGGTTGCGACAGCAAGATCGACAGCACACAGGGGG
66 T-TCCATGTCTAAGACCAG-ACTAGACCGAGGGTTATGGCAACAGGACCGACAGCACGCAGGGGG
* * *
17431735 -GA-CTGGGCCGATCCCTGACTTACGCATTCT
129 AGATC-AGGCCGATCCCTGACTTGCGCATTAT
* * * *
17431765 GCCTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* ** *
17431830 TTCCATGTCTAAGCCCCAG-CTAGACCGAGGGTTATGGCAATGGGACCGACAGCACGTAGAGGGG
66 TTCCATGTCTAAG-ACCAGACTAGACCGAGGGTTATGGCAACAGGACCGACAGCACGCAG-GGGG
* *
17431894 -GATCAGGCCGATCCCCGGCTTGCGCATTAT
129 AGATCAGGCCGATCCCTGACTTGCGCATTAT
* * * * * * *
17431924 GTCTCTTTGACCGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCA
1 GCCTCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * * * *
17431989 TTCCCA-GTCTAAGATCAGATTGGACTGAGGGTTGTGGTAGCAGTATCGACAGCATGCAGGGGGA
66 TT-CCATGTCTAAGACCAGACTAGACCGAGGGTTATGGCAACAGGACCGACAGCACGCAGGGGGA
* *
17432053 GATCGGGCCGATCCCT-ATCTTGCGCATTTT
130 GATCAGGCCGATCCCTGA-CTTGCGCATTAT
* * *
17432083 GCCTCGTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
17432148 TTCCATGTCTAAG
66 TTCCATGTCTAAG
17432161 GATATGGAGT
Statistics
Matches: 316, Mismatches: 70, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 100 0.32
159 208 0.66
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GCCTCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGACCAGACTAGACCGAGGGTTATGGCAACAGGACCGACAGCACGCAGGGGGAG
ATCAGGCCGATCCCTGACTTGCGCATTAT
Found at i:17432891 original size:26 final size:26
Alignment explanation
Indices: 17432855--17432907 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17432845 GTTAACTTAG
*
17432855 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
17432881 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17432907 G
1 G
17432908 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17433338 original size:26 final size:26
Alignment explanation
Indices: 17433309--17433361 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17433299 TCGGCTGAGT
17433309 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17433335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17433361 G
1 G
17433362 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17433720 original size:26 final size:26
Alignment explanation
Indices: 17433690--17433742 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17433680 GTTGACTTAG
17433690 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17433716 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17433742 G
1 G
17433743 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17434045 original size:159 final size:154
Alignment explanation
Indices: 17433842--17434214 Score: 355
Period size: 153 Copynumber: 2.4 Consensus size: 154
17433832 CTGACTGAGT
* * * * *
17433842 GCCCGCACG-TCCATTTCGTGGGTTGGCCTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 GCCCGCACGCT-CATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG---CA-
** * * * * *
17433906 TCGGACCGAGGGTTGTGGTAGCGGGA-CTGGCAGCACGCAGAGGGTGACTGGGCCGATCACTAGC
61 TCGGACCGAGGGTTGTGACAGCAGGATC-GACAGCACGCAG-GGGGGACTAGGCCGATCACCAGC
*
17433970 TTGCGCATTATGCCTTTTCAG-TCGGCTCAAC
124 TTGCGCATTATGCC-TCTCAGATCGGCTCAAC
*
17434001 GCCCGCACGCTCATTTCGTTGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGG
1 GCCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATCGG
* * * * * * *
17434064 ACTGAGGGTTGTGACAGTAGGATCGACAGCATGGAGGGGGGACTAGGTCGATCCCCGGCTTGCGC
65 ACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGACTAGGCCGATCACCAGCTTGCGC
* * * * *
17434129 ATTCTGCCTCTCCGATCGGTTGAGC
130 ATTATGCCTCTCAGATCGGCTCAAC
*
17434154 GCCCGCACGCTCGTTTC-TTGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCCCGCACGCTCATTTCGTT-GGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
17434215 ATGGAGTTCA
Statistics
Matches: 178, Mismatches: 28, Indels: 21
0.78 0.12 0.09
Matches are distributed among these distances:
152 10 0.06
153 84 0.47
154 32 0.18
155 2 0.01
159 46 0.26
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (154 bp):
GCCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCGGA
CCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGACTAGGCCGATCACCAGCTTGCGCA
TTATGCCTCTCAGATCGGCTCAAC
Found at i:17434221 original size:26 final size:26
Alignment explanation
Indices: 17434185--17434237 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17434175 GTTAGCTTAG
17434185 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
17434211 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17434237 G
1 G
17434238 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17435407 original size:158 final size:158
Alignment explanation
Indices: 17434992--17435430 Score: 517
Period size: 159 Copynumber: 2.8 Consensus size: 158
17434982 CAGGATCGGT
* * * * *
17434992 AGCACGCATGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGACCGACTGAGCTC
1 AGCACGCA-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
17435057 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCAAGTCTAAGCCCCAGCC
65 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAAGTCTAAGCCCCAGCC
* ** *
17435121 GGACCGAGGGTTGTGGCAGTGGGACCGAC
130 AGACCGAGGGTTCCGGCAGTAGGACCGAC
* * * * * * *
17435150 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGTG
1 AGCACGC--AGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * ** *
17435215 CCCACACACTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAA-TCTAAG-ATCGGA
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAAGTCTAAGCCCCAG-
* **
17435278 CCAGACCGAGGGTTCCGTCAGTAGGATTGAC
128 CCAGACCGAGGGTTCCGGCAGTAGGACCGAC
* * *
17435309 AGCACGCAGGGGAGATCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCAACCGGCTGAGCGC
1 AGCACGCAGGGG-GATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
17435374 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
65 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAAGTCTAAGC
17435431 ATACGGAGTT
Statistics
Matches: 232, Mismatches: 42, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
157 8 0.03
158 98 0.42
159 121 0.52
160 5 0.02
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (158 bp):
AGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAAGTCTAAGCCCCAGCCA
GACCGAGGGTTCCGGCAGTAGGACCGAC
Found at i:17436896 original size:26 final size:26
Alignment explanation
Indices: 17436866--17436918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17436856 GTTGACTTAG
17436866 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17436892 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17436918 G
1 G
17436919 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17437789 original size:26 final size:26
Alignment explanation
Indices: 17437739--17437791 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17437729 GTTGACTTAG
* *
17437739 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
17437765 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17437791 G
1 G
17437792 ACCGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17438053 original size:159 final size:157
Alignment explanation
Indices: 17437885--17438261 Score: 396
Period size: 158 Copynumber: 2.4 Consensus size: 157
17437875 ACTGGCTGAG
* * * *
17437885 CACCCGCATGCCCGTTCCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCGCAG
1 CACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGCA-
** * * ** * * *
17437950 CTGGACTGAGGGTTGTAGCAGCGGGACCGACAGCACACAGAGGTGGATCGGGCTGATCCCCAGCT
65 CCAGACCGAAGGTTACAACAGCAGGACCGACAGCACACAGAGG-GGACCGGGCTGATCCCCAGCT
* *
17438015 TACGCATTATGCCTCTTCGATTGGCTCAA
129 TACGCATTATACCTCTTCGATCGGCTCAA
* * * * * * *
17438044 CACCTGCATGCTCGTTTCATGAGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAGATCGG
1 CACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCGC
* * ** *
17438108 ACCAGACCGAAGGTTACAACAGCAGGATCGATAGCATGCAGAGGGGACCGGGCTGATCCCCGGCT
64 ACCAGACCGAAGGTTACAACAGCAGGACCGACAGCACACAGAGGGGACCGGGCTGATCCCCAGCT
* * * * *
17438173 TACGTATTCTACCTCTTCGATCGGTTGAG
129 TACGCATTATACCTCTTCGATCGGCTCAA
* * *
17438202 CACCCGCACGCTCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGC
1 CACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17438262 ATACAGAGTT
Statistics
Matches: 175, Mismatches: 40, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.02
158 88 0.50
159 78 0.45
160 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
CACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGCAC
CAGACCGAAGGTTACAACAGCAGGACCGACAGCACACAGAGGGGACCGGGCTGATCCCCAGCTTA
CGCATTATACCTCTTCGATCGGCTCAA
Found at i:17438270 original size:26 final size:26
Alignment explanation
Indices: 17438234--17438286 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17438224 GTTGGCTTGG
* *
17438234 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCACTCCCA-GTCTAA
17438260 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
17438286 G
1 G
17438287 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:17438952 original size:26 final size:26
Alignment explanation
Indices: 17438916--17438994 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17438906 GTTGTCTTAG
17438916 GCATACGGAGTTCATACCCAGCCTAA
1 GCATACGGAGTTCATACCCAGCCTAA
*
17438942 GCATATGGAGTTCATACCCAGCCTAA
1 GCATACGGAGTTCATACCCAGCCTAA
* *
17438968 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGCCTAA
17438994 G
1 G
17438995 ATCAGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGCCTAA
Found at i:17439313 original size:26 final size:26
Alignment explanation
Indices: 17439284--17439336 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17439274 GTTGACTTAG
*
17439284 GCATACAGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17439310 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17439336 G
1 G
17439337 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17441794 original size:26 final size:26
Alignment explanation
Indices: 17441765--17441817 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17441755 GTTGACTTAG
*
17441765 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17441791 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17441817 G
1 G
17441818 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17442608 original size:26 final size:26
Alignment explanation
Indices: 17442578--17442630 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17442568 GTTGACTTAG
17442578 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17442604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17442630 G
1 G
17442631 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17443069 original size:158 final size:157
Alignment explanation
Indices: 17442604--17443096 Score: 476
Period size: 158 Copynumber: 3.1 Consensus size: 157
17442594 CCTAGTCTAA
* ** *
17442604 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTT-TCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGATCGAGGGTTGT-GGCAGTAGGATCGAC
** ** * * * * *
17442668 AGCAC-GTAGGGGGGGCTGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCCGTCGACTAAGCG
65 AGCACACAAGGGGGATC-GAGTCGATCCC-GGCTTGCGCATTATGCCTCTCCGGTCGATTAAGCG
17442732 CCCGCACG-TCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * ** ** * * * *
17442762 GCATATGGAGTTCATT-CCACGTGCAAGCCCCAACCAGATCGAGGGTTGTGGTAGCAAGATTGAC
1 GCATACGGAGTTCATTCCCA-GTGTAAGATCGGACCAGATCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * * *
17442826 AGCAAACAGATGGGGATC-AGGTCGATCCCCGGCTTACGCATTATGCCTATTCGATCGATTCAGT
65 AGCACACA-AGGGGGATCGA-GTCGAT-CCCGGCTTGCGCATTATGCCTCTCCGGTCGATTAAGC
* * * *
17442890 GCCTGCACGCTCGTTTGGTGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17442921 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGA-CTGAGGGTTGTGGCCGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGATC-GAGGGTTGTGGCAGTAGGATCGAC
* * * * * *
17442985 AACACACAAGGGGGATCGAGTCGATCCTCGGGTTGCGCTTTTTGCCTCTCCGGCCGATTGAGCGC
65 AGCACACAAGGGGGATCGAGTCGATCC-CGGCTTGCGCATTATGCCTCTCCGGTCGATTAAGCGC
17443050 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
17443079 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
17443097 ATGTCTAAGC
Statistics
Matches: 261, Mismatches: 63, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 134 0.51
159 109 0.42
160 13 0.05
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGATCGAGGGTTGTGGCAGTAGGATCGACA
GCACACAAGGGGGATCGAGTCGATCCCGGCTTGCGCATTATGCCTCTCCGGTCGATTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17443115 original size:26 final size:26
Alignment explanation
Indices: 17443079--17443131 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17443069 GTTGGCTTAG
17443079 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17443105 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17443131 G
1 G
17443132 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17443849 original size:26 final size:26
Alignment explanation
Indices: 17443812--17443864 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17443802 GTTGACTTAG
*
17443812 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
17443838 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17443864 G
1 G
17443865 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17444293 original size:158 final size:159
Alignment explanation
Indices: 17443846--17444338 Score: 412
Period size: 158 Copynumber: 3.1 Consensus size: 159
17443836 AAGCATACGA
* ** * ** *
17443846 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCGACAGTAGGATCAACAGCACACAA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAG
* * * *
17443911 GGGGGACCGAGCTGATGCC-CGGT-TTACGCATTCTACCTCTCTGGTCGACTGAGCGTCCGCACG
66 GGGGGACCGGGCTGAT-CCTC-GTCTTACGCATTCTACCTCTCTGGTCGGCTAAGCGCCCGCACG
* * * * *
17443974 CCCATTCCGCT-GGTT-AGCTTAGGCATAGGG
129 CTCGTTTC-ATGGGTTGAGATTAGGCATAGGG
** * * * * * * * * *
17444004 AGTTCATT-CCATGTCTAAGCCCCA-ACCTGACCAAGGGTTGTGGTAACGGGATCGATAGCATGT
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCAACAGCACGT
* * * * * * * * * * *
17444067 AGAGGGGGACCCGACCGATCCTCGGCTTGCACATTATGCCTCTCCGG-CTGGCTTAGCGCCCGTA
64 AG-GGGGGACCGGGCTGATCCTCGTCTTACGCATTCTACCTCTCTGGTC-GGCTAAGCGCCCGCA
*
17444131 CGCTCGTTTCATGGGTTGA-ATTAGGCATATGG
127 CGCTCGTTTCATGGGTTGAGATTAGGCATAGGG
* * *
17444163 ATTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAG
* *
17444228 GGGGGACCGGGCTGATCCTCGTCTTATGCTTTCTACCTCTCTGGTCGGCTAAGCGCCCGCACGCT
66 GGGGGACCGGGCTGATCCTCGTCTTACGCATTCTACCTCTCTGGTCGGCTAAGCGCCCGCACGCT
* * **
17444293 CGTTTCATGGGTTG-GCTTAGACATACAG
131 CGTTTCATGGGTTGAGATTAGGCATAGGG
17444321 AGTTCATT-CCATGTCTAA
1 AGTTCATTCCCA-GTCTAA
17444339 ACATATGGAG
Statistics
Matches: 253, Mismatches: 69, Indels: 26
0.73 0.20 0.07
Matches are distributed among these distances:
157 6 0.02
158 133 0.53
159 110 0.43
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (159 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAG
GGGGGACCGGGCTGATCCTCGTCTTACGCATTCTACCTCTCTGGTCGGCTAAGCGCCCGCACGCT
CGTTTCATGGGTTGAGATTAGGCATAGGG
Found at i:17444343 original size:26 final size:26
Alignment explanation
Indices: 17444313--17444364 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17444303 GTTGGCTTAG
17444313 ACATACAGAGTTCATT-CCATGTCTAA
1 ACATACAGAGTTCATTCCCA-GTCTAA
**
17444339 ACATATGGAGTTCATTCCCAGTCTAA
1 ACATACAGAGTTCATTCCCAGTCTAA
17444365 GATTGGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (26 bp):
ACATACAGAGTTCATTCCCAGTCTAA
Found at i:17445055 original size:26 final size:26
Alignment explanation
Indices: 17445019--17445071 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17445009 GTTGACTTAG
17445019 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
17445045 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17445071 G
1 G
17445072 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17445555 original size:26 final size:26
Alignment explanation
Indices: 17445519--17445571 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17445509 GTTGGCTTAG
17445519 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17445545 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17445571 G
1 G
17445572 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17452469 original size:158 final size:158
Alignment explanation
Indices: 17452188--17452478 Score: 345
Period size: 158 Copynumber: 1.8 Consensus size: 158
17452178 CCTGCACGTC
* *
17452188 CGTTTCATGGGTTGGCTTAGGCATCAGAGTTCATTCCATGTCCAAGCCCTAGCCAGACCGAGGGT
1 CGTTTCATGGGTTGACTTAGGCATCAGAGTTCATTCCATGTCCAAGACCTAGCCAGACCGAGGGT
* * * * *
17452253 TGTCACAGCAAGACTGGCAGCATGCAGAGGGGGACCGGGCCAATCCTCGGCTTACGCATTATGCC
66 TGTCACAGCAAGACTGACAACACGCAGAGGGGGACCAGGCCAATCCCCGGCTTACGCATTATGCC
17452318 TCTTCGGCTGGCTCAGCGCCCGCACGCT
131 TCTTCGGCTGGCTCAGCGCCCGCACGCT
* * * *
17452346 CGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAG
1 CGTTTCATGGGTTGACTTAGGCAT-CAGAGTTCATT-CCATGTCCAAGACCTAG-CCAGACCGAG
*** * * * * * * *
17452409 GGTTGTGGTAGCAGGATTGACAACACGTAG-GGGGGACTAGGCCGATCCCCGGCTTGCGCATTCT
63 GGTTGTCACAGCAAGACTGACAACACGCAGAGGGGGACCAGGCCAATCCCCGGCTTACGCATTAT
17452473 GCCTCT
128 GCCTCT
17452479 CCGACCAGCC
Statistics
Matches: 109, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
158 58 0.53
159 48 0.44
160 3 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CGTTTCATGGGTTGACTTAGGCATCAGAGTTCATTCCATGTCCAAGACCTAGCCAGACCGAGGGT
TGTCACAGCAAGACTGACAACACGCAGAGGGGGACCAGGCCAATCCCCGGCTTACGCATTATGCC
TCTTCGGCTGGCTCAGCGCCCGCACGCT
Found at i:17452541 original size:26 final size:26
Alignment explanation
Indices: 17452511--17452563 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17452501 GTTGGCTTAG
*
17452511 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17452537 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17452563 G
1 G
17452564 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17453267 original size:26 final size:26
Alignment explanation
Indices: 17453237--17453287 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17453227 TGACTTAGGA
17453237 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
17453263 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
17453288 ATCGATTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:17459058 original size:26 final size:26
Alignment explanation
Indices: 17459024--17459074 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17459014 TGGCTTAGGT
17459024 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
17459050 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17459075 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:17459215 original size:185 final size:187
Alignment explanation
Indices: 17458859--17459234 Score: 490
Period size: 184 Copynumber: 2.0 Consensus size: 187
17458849 GTTAACTTAG
* * *
17458859 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGGATCGATGGTTACGACAGTAGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATT--ATCGGACCAGATCGAGGGTTACGACAGCAGGAT
* * * * * * **
17458924 TGACAGTATGCAGGGGGGACCGGGCCGATCCTCAGCTTGTGCATTCTGCCTCTCCAGTTGGCTGA
64 CGACAGCATGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGGCTGA
* * * * *
17458989 GCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAA
129 GCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCGAA
*
17459048 GCATACGGAGTTCATTCCCAGTCTAAGA-T-T-GGACCAGATCGAGGGTTGC-AGCAGCAGGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTATCGGACCAGATCGAGGGTTACGA-CAGCAGGATC
* * * * *
17459109 GACAGCATGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTTTACCTCTCTAGCCGGTTGAG
65 GACAGCATGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGGCTGAG
17459174 CACCCGCAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCGAA
130 CACCCGC-ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCGAA
17459233 GC
1 GC
17459235 CCTAGCTGGA
Statistics
Matches: 163, Mismatches: 22, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
183 1 0.01
184 83 0.51
185 50 0.31
188 1 0.01
189 28 0.17
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (187 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTATCGGACCAGATCGAGGGTTACGACAGCAGGATCG
ACAGCATGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGC
ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCGAA
Found at i:17461607 original size:26 final size:26
Alignment explanation
Indices: 17461570--17461622 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17461560 GTTGACTTAG
*
17461570 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17461596 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17461622 G
1 G
17461623 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17462278 original size:26 final size:26
Alignment explanation
Indices: 17462242--17462294 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17462232 GATGACTTAG
17462242 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17462268 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17462294 G
1 G
17462295 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17462634 original size:159 final size:158
Alignment explanation
Indices: 17462393--17462929 Score: 378
Period size: 159 Copynumber: 3.4 Consensus size: 158
17462383 CGATCGACTG
* * * * **
17462393 AGCGCCCGCACACCCGTTTCGTGGGTTTG-CTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCC
1 AGCGCCCGAACGCTCGTTTCGTGGG-TTGACTTA-GCATACGGAGTTCATTCCCA-GTCTAAGAT
* * *
17462456 CCAATCGGACCGAGGGTTGCGGCAGCGAG-ACCGACAGAACGCA-GAGGGGGATCGAGC-GAATC
63 CCAACCGGACCGAGGGTTGCAGCAGC-AGTACCGACAGAACGCAGGA-GGGGACCGAGCTG-ATC
** *
17462518 CCCGACTTGTGCATTATGCCT-CTCCGACCTGCTC
125 CCCGACTTGCACATTATGCCTCCT-CGACCGGCTC
* **
17462552 AGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGATGG
1 AGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAG-CATACGGAGTTCATTCCCAGTCTAAGATCC
* * * * * * * * *
17462617 GACCGGATCGAGTGTTGCAGTAGCAGTATCGACAGCACGTAGGAGGGGACCGGGCTGATCCCCGG
65 AACCGGACCGAGGGTTGCAGCAGCAGTACCGACAGAACGCAGGAGGGGACCGAGCTGATCCCCGA
* * *
17462682 CTTGCACATTCTGCCTCCTTGATCGGCTC
130 CTTGCACATTATGCCTCCTCGACCGGCTC
* * * *
17462711 AGCGCCCGTACGCTCGTTTCGTGGGTTGATTTATGCATACAGAGTTCATTCCCAGTGTAAGAT-C
1 AGCGCCCGAACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCC
* * * * * ** * * * *
17462775 AGACCGAACCGAAGGTTGTAGTAGCAGGATTGACAGTACGTAGG-GGGGACCAGAAC-GATCTCC
65 A-ACCGGACCGAGGGTTGCAGCAGCAGTACCGACAGAACGCAGGAGGGGACC-GAGCTGATCCCC
* * * * * *
17462838 -AGCTTACGCATTCTACCT-CTCCGGCCGGCTG
128 GA-CTTGCACATTATGCCTCCT-CGACCGGCTC
** * * *
17462869 AATGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 AGCGCCCGAACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCA-GTCTAAG
17462930 CATACGGAGT
Statistics
Matches: 303, Mismatches: 62, Indels: 27
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 86 0.28
159 203 0.67
160 9 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGATCCA
ACCGGACCGAGGGTTGCAGCAGCAGTACCGACAGAACGCAGGAGGGGACCGAGCTGATCCCCGAC
TTGCACATTATGCCTCCTCGACCGGCTC
Found at i:17462939 original size:26 final size:26
Alignment explanation
Indices: 17462903--17462955 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17462893 GTTGGCTTAG
17462903 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17462929 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17462955 G
1 G
17462956 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17464314 original size:26 final size:26
Alignment explanation
Indices: 17464284--17464336 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17464274 GATGACTTAG
17464284 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
* * *
17464310 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
17464336 G
1 G
17464337 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:17464614 original size:159 final size:159
Alignment explanation
Indices: 17464451--17464814 Score: 380
Period size: 158 Copynumber: 2.3 Consensus size: 159
17464441 CGCACGCCCG
* * * * *
17464451 TTTCGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCTAGGGT
1 TTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGT
* ** *
17464515 TGTC-GTAGCGAG-ACCGACAGCACGCAGAGGGGGATCGAGCAGATCCCCGACTTGTGCATTATG
66 TG-CGGTAGC-AGTACCAACAGCACGCAG-GGGGGATCGAGCAGATCCCCGACTTGCACATTATA
* *
17464578 CCTCTCCGGCCGACTCAGTGCCTGAACGCTCA
128 CCTCTCCGGCCGACTCAGTGCCCGAACACTCA
* *** *
17464610 TTTCGTGGG-TTGACTTAGACATACGGAGTTCATTCCCA-GTCTAAG-ATGGGACCGAACCGAGT
1 TTTCGTGGGTTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGG
* * * * *
17464672 GTTGCGGTAGCAGTATCAACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTAC
64 GTTGCGGTAGCAGTACCAACAGCACGCAGGGGGGATCGAGCAGATCCCCGACTTGCACATTATAC
* * * * * *
17464737 CTCTCTGGTCGGCTGAGTGCCCGCACACTCG
129 CTCTCCGGCCGACTCAGTGCCCGAACACTCA
* *
17464768 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17464815 TACGGAGTTC
Statistics
Matches: 167, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
157 3 0.02
158 94 0.56
159 67 0.40
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGT
TGCGGTAGCAGTACCAACAGCACGCAGGGGGGATCGAGCAGATCCCCGACTTGCACATTATACCT
CTCCGGCCGACTCAGTGCCCGAACACTCA
Found at i:17464785 original size:158 final size:157
Alignment explanation
Indices: 17464310--17464812 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 157
17464300 CCTAGTCTAA
* * ** * *
17464310 GCATATGGAGTTCATTCC-TAGTCTAAGATTAGATCGGACCGAGGGTTGCGACAGTAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCA-GATCGAC
* * * * * *
17464374 AACACGCATAGGGGGATCGGGTCGATTCCCGGCTTGCGCATTCTGCCTCT-TCGATCGACTGAGC
64 AGCACGCA-GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGTCGACTGAGT
* * *
17464438 ACCCGCACGCCCGTTTCGTGGGTTTGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
17464469 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCTAGGGTTGTC-GTAGCGAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTG-CGGTAGC-AGATCGA
* * * * * * * *
17464532 CAGCACGCAGAGGGGGATCGAGCAGATCCCCGACTTGTGCATTATGCCTCTCCGGCCGACTCAGT
63 CAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGT
* * * *
17464597 GCCTGAACGCTCATTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
17464628 ACATACGGAGTTCATTCCCA-GTCTAAGATGGGACCGAACCGAGTGTTGCGGTAGCAGTATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAG-ATCGAC
* * *
17464692 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCTGGTCGGCTGAGTGC
64 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGTGC
* *
17464757 CCGCACACTCGTTTTGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
17464786 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17464813 CATACGGAGT
Statistics
Matches: 272, Mismatches: 61, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 94 0.35
159 167 0.61
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17464836 original size:26 final size:26
Alignment explanation
Indices: 17464786--17464838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17464776 GTTGGCTTAG
*
17464786 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17464812 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17464838 G
1 G
17464839 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17465033 original size:26 final size:26
Alignment explanation
Indices: 17464997--17465047 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17464987 TTTACTTAGC
17464997 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
17465023 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
17465048 CATCGGCCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:17465323 original size:158 final size:158
Alignment explanation
Indices: 17465019--17465364 Score: 392
Period size: 158 Copynumber: 2.2 Consensus size: 158
17465009 ATCCCCAGTC
** * *** ** * *
17465019 TAAGCATACGGAGTTCATTCCCA-GTCTAA-CATCGGCCAGACCAAGGGTTACGACAGTAGGATC
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGAATGAGGGTTGTGGCAGCAGGATC
* *
17465082 GACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCATATTCTGCCTCTTTGACCAGTTGAG
65 GACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCATATTCTGCCTCTTCGACCAGTTGAG
* *
17465147 CGCCCACACGCCCGTTTCGTGGGTTGGGT
130 CGCCCACACGCCCATTTCGTGGGTTGGCT
* ** *
17465176 TAGGCATGGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAATGAGGGTTGTGGCAGCAGGATTG
1 TAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAATGAGGGTTGTGGCAGCAGGATCG
* * * * * ** *
17465241 ATAGCACGCAGGGGGGATCGGGCCGGTCCCTGACTTGC-TCATTCTGCCTCTTCGGTCGGTTGAG
66 ACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCAT-ATTCTGCCTCTTCGACCAGTTGAG
* * *
17465305 CGCCCGCATGCTCATTTCGTGGGTTGGCT
130 CGCCCACACGCCCATTTCGTGGGTTGGCT
17465334 TAAGCATACGGAGTTCATTCCATGTCTAAGC
1 TAAGCATACGGAGTTCATTCCATGTCTAAGC
17465365 ATACAGAGTT
Statistics
Matches: 154, Mismatches: 32, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
156 3 0.02
157 23 0.15
158 128 0.83
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAATGAGGGTTGTGGCAGCAGGATCG
ACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCATATTCTGCCTCTTCGACCAGTTGAGC
GCCCACACGCCCATTTCGTGGGTTGGCT
Found at i:17465363 original size:26 final size:26
Alignment explanation
Indices: 17465334--17465388 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
17465324 TGGGTTGGCT
*
17465334 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
17465360 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17465386 TAA
1 TAA
17465389 AATTGTACTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17465563 original size:26 final size:26
Alignment explanation
Indices: 17465533--17465585 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17465523 GTTGACTTAG
17465533 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
17465559 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
17465585 G
1 G
17465586 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:17465572 original size:196 final size:196
Alignment explanation
Indices: 17465230--17465626 Score: 519
Period size: 196 Copynumber: 2.0 Consensus size: 196
17465220 AGGGTTGTGG
* * * * * * * *
17465230 CAGCAGGATTGATAGCACGCAGGGGGGATCGGGCCGGTCCCTGACTTGCTCATTCTGCCTCTTCG
1 CAGCAGGATCGATAGCACACAGGGAGGATCGGGCCGATCCATGACTTGCGCATTCTACCTCTCCG
* * * * *
17465295 GTCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTC
66 GTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCATGTC
* * *
17465360 TAAGCATACAGAGTTCATTCCCAGTCTAAAATT-GTACTGGACTGAGGTTTACGGTAGCAGGACC
131 TAAGCATACAGAGTTCATTCCCAGTCTAAAATTAG-ACTGGACCGAGGGTTACAGTAGCAGGACC
17465424 AA
195 AA
** *
17465426 CAGCAGGATCGATAGCACACAGGGAGGATCGGGTTGATCCATGGCTTGCGCATTCTACCTCTCCG
1 CAGCAGGATCGATAGCACACAGGGAGGATCGGGCCGATCCATGACTTGCGCATTCTACCTCTCCG
* *
17465491 GTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-TAGT
66 GTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCAT-GT
** * * *
17465555 CTAAGCATATGGAGTTCATTCCTAGTCTAAGATTAGACTGGACCGAGGGTTACAGTAGCAGGATC
130 CTAAGCATACAGAGTTCATTCCCAGTCTAAAATTAGACTGGACCGAGGGTTACAGTAGCAGGACC
*
17465620 GA
195 AA
17465622 CAGCA
1 CAGCA
17465627 CGTAGGGGGG
Statistics
Matches: 172, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 170 0.99
197 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
CAGCAGGATCGATAGCACACAGGGAGGATCGGGCCGATCCATGACTTGCGCATTCTACCTCTCCG
GTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCATGTC
TAAGCATACAGAGTTCATTCCCAGTCTAAAATTAGACTGGACCGAGGGTTACAGTAGCAGGACCA
A
Found at i:17465796 original size:538 final size:543
Alignment explanation
Indices: 17464692--17465926 Score: 1423
Period size: 538 Copynumber: 2.3 Consensus size: 543
17464682 CAGTATCAAC
* * *
17464692 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTC-TCTGGTCGGCTGAGTG
1 AGCACGCAGGGGGGATCGGGCCGAT-CCCGACTTGCACATTCTGCCTCTTC-GGTCGGCTGAGCG
* *
17464756 CCCGCACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
64 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * **
17464821 GTTCATTCCCAATCTAAGATTGAACCGGACCGAGGGTTACGGTAGCAGGACCAGTAGCAGGATCG
129 GTTCATTCCCAGTCTAAAATTGAACCGGACCGAGGGTTACGGTAGCAGGACCAACAGCAGGATCG
* ** * *
17464886 GTAGCACGTAGGGGGGGAGCGGGCCAATCCCCAGCTTGCCCATTTTGCCTCTCCGATCGGCATCT
194 ATAGCACACAGGGGAGGAGCGGGCCAATCCACAGCTTGCCCA--TT--CTCT-C-ATC-GCATCT
* * *
17464951 CCGGTCGGCTGAGCGACTGCACGCTCATTTCGTAGGTTTACTTAGCCATACGGAGTTCATCCCCA
252 CCGGTCGGCTGAGCGACCGCACGCTCATTTCATAGGTTGACTTAGCCATACGGAGTTCATCCCCA
* * *
17465016 GTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCGGCCAGACCAAGGGTTACGACAGTAGGAT
317 GTCTAAGCATACGGAGTTCATTCCCAGTCTAACATAGACCAGACCAAGGGTTACGACAGCAGGAT
* * * * * * *
17465081 CGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCATATTCTGCCTCTTTGACCAGTTGA
382 CGACAGCACGCAAGGGGGACCGAGCCGATCCCCAGCTTACACATTCTACCTCTTAGACCAGCTGA
** * * *
17465146 GCGCCCACACGCCCGTTTCGTGGGTTGGGTTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCCA
447 GCGCCCACACGCCCGTTTCGTGAATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCA
* * ** *
17465211 GCCAGAATGAGGGTTGTGGCAGCAGGATTGAT
512 GCCAGAACGAGGGTTGCGGCAGCAGGACCGAG
* * *
17465243 AGCACGCAGGGGGGATCGGGCCGGTCCCTGACTTGCTCATTCTGCCTCTTCGGTCGGTTGAGCGC
1 AGCACGCAGGGGGGATCGGGCCGATCCC-GACTTGCACATTCTGCCTCTTCGGTCGGCTGAGCGC
* * * *
17465308 CCGCATGCTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
65 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
* * * *
17465373 TTCATTCCCAGTCTAAAATTGTACTGGACTGAGGTTTACGGTAGCAGGACCAACAGCAGGATCGA
130 TTCATTCCCAGTCTAAAATTGAACCGGACCGAGGGTTACGGTAGCAGGACCAACAGCAGGATCGA
* *** ** *
17465438 TAGCACACA-GGGAGGATCGGGTTGATCCATGGCTTGCGCA-T-TCT-A-C-C-TCTCCGGTCGG
195 TAGCACACAGGGGAGGAGCGGGCCAATCCACAGCTTGCCCATTCTCTCATCGCATCTCCGGTCGG
* * * * *
17465496 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
260 CTGAGCGACCGCACGCTCATTTCATAGGTTGACTTAGCCATACGGAGTTCATCCCCAGTCTAAGC
* * * ** * *
17465561 ATATGGAGTTCATTCCTAGTCTAAGATTAGACTGGACCGAGGGTTAC-AGTAGCAGGATCGACAG
325 ATACGGAGTTCATTCCCAGTCTAACA-TAGACCAGACCAAGGGTTACGA-CAGCAGGATCGACAG
* * * * * *
17465625 CACGTAGGGGGGACTGAGCCGATCCCCAGCTTACGCATTCTACCTCTCTAG-TCGGCTGAGCGCC
388 CACGCAAGGGGGACCGAGCCGATCCCCAGCTTACACATTCTACCTCT-TAGACCAGCTGAGCGCC
17465689 CACACGCCCGTTTCGTGAATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCAG
452 CACACGCCCGTTTCGTGAATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCAG
* * **
17465754 ACCGAGGGTTGCGGTAGTGGGACCG-G
517 AACGAGGGTTGCGGCAGCAGGACCGAG
* * * * * * ** *
17465780 AGCACACAGAGGGGGATCAGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCG
1 AGCACGCAG-GGGGGATCGGGCCGATCCCGA-CTTGCACATTCTGCCTCTTCGGTCGGCTGAGCG
* * *
17465845 CTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTGAA-CATATGG
64 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT-AAGCATACGG
* *
17465909 AGTTTATTCACAGTCTAA
128 AGTTCATTCCCAGTCTAA
17465927 GAGGTTGAGC
Statistics
Matches: 579, Mismatches: 97, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
537 101 0.17
538 267 0.46
539 4 0.01
540 1 0.00
541 1 0.00
544 3 0.01
547 1 0.00
550 25 0.04
551 174 0.30
552 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (543 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCGACTTGCACATTCTGCCTCTTCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAAATTGAACCGGACCGAGGGTTACGGTAGCAGGACCAACAGCAGGATCGAT
AGCACACAGGGGAGGAGCGGGCCAATCCACAGCTTGCCCATTCTCTCATCGCATCTCCGGTCGGC
TGAGCGACCGCACGCTCATTTCATAGGTTGACTTAGCCATACGGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAACATAGACCAGACCAAGGGTTACGACAGCAGGATCGACAGCAC
GCAAGGGGGACCGAGCCGATCCCCAGCTTACACATTCTACCTCTTAGACCAGCTGAGCGCCCACA
CGCCCGTTTCGTGAATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCAGAACG
AGGGTTGCGGCAGCAGGACCGAG
Found at i:17467346 original size:26 final size:26
Alignment explanation
Indices: 17467298--17467350 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17467288 GTTGACTTAG
*
17467298 GCATACAGAGTTCATCACTAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
*
17467324 GCATACTGAGTTCATTC-CCAGTCTAA
1 GCATACAGAGTTCA-TCACCAGTCTAA
17467350 G
1 G
17467351 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:17467509 original size:185 final size:184
Alignment explanation
Indices: 17466943--17467511 Score: 584
Period size: 197 Copynumber: 3.0 Consensus size: 184
17466933 GTTGACTTAG
* * ** * * ** *
17466943 GCATACGGTGTTCATTCCTAGTCTAAGATCAGACTGGCTCGAGGGTTGCGATAGTAGGATCAACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGATCGAGGGTAGCGGCAGCAGGATCAACA
* * * * *
17467008 GCACGCAGGGGGGATCAGGCCGATCCTCAACCTCCGCATTCTGCCTCTCCGATCGGTTGAGCGCT
66 GCACGCAGGGGGGATCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
* * *
17467073 CGCATACTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
17467127 GCATACGGAGTTCATTCCTAGTCTATGATCAAACCAGATCGAGGCTTGTGATAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGATCGA-G---G-G-TAGC-GG--CAGC-
* * ** * * * *
17467192 ATAGGATCAGCAGCACACAGGGGGGGATTGGGTCGATCCTCGACTTGCACATTCTACCTCTCCGG
56 --AGGATCAACAGCACGCA-GGGGGGATCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGG
* * * * *
17467257 TCAGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA-T-CACTAGT
118 TCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-T-GT
17467320 CTAA
181 CTAA
* *
17467324 GCATACTGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTAGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGATCGAGGGTAGCGGCAGCAGGATCAACA
* * * * * * *
17467389 GCATGCAGTCGGGGACCAGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGGCCGGTTGAGCGC
66 GCACGCAG-GGGGGATCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGC
* ** *
17467454 CCGCATGCCCGTTTCGTGAATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17467509 GCA
1 GCA
17467512 CCAGCCAGAC
Statistics
Matches: 310, Mismatches: 57, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
184 37 0.12
185 102 0.33
186 2 0.01
187 2 0.01
188 5 0.02
189 1 0.00
190 5 0.02
191 5 0.02
192 1 0.00
193 3 0.01
195 2 0.01
196 18 0.06
197 127 0.41
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGATCGAGGGTAGCGGCAGCAGGATCAACA
GCACGCAGGGGGGATCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17468400 original size:26 final size:26
Alignment explanation
Indices: 17468364--17468414 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17468354 TTGACTTAGG
17468364 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
17468390 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
17468415 GATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:17468754 original size:159 final size:157
Alignment explanation
Indices: 17468390--17468791 Score: 360
Period size: 159 Copynumber: 2.5 Consensus size: 157
17468380 CCAGTCTAAC
** ** *
17468390 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGAACTAAGATTTGTGGCAGCAGGATCAGCA
1 CATACGGAGTTCATT-CCAGTCTAAGATCGGACT-GAACCGAGGGTTGTGGCAGCAGGACCAGCA
* * ** * * * * *
17468454 GCACGCAGGGAGGACCAGGCCGATCCCCGGCTTGCGGATTCGGCCTCTCTGGTCGGCTGAGCACC
64 GCACGCAGGGAGGACCAGGCCGATCCCCAGCTTCCACATTAGGCCTCTCCGGCCGGCTCAGCACA
* * * *
17468519 CGCATGCCCGTTTCGTGGGTTGGCTTAGG
129 CGCACGCCCATTTCATGGGTTGACTTAGG
* * * * * * * * *
17468548 CATAGGGAGTTCATTCCATGTCTAAGCACCAG-CCGTATCGAGGGTTGTGGCAGCGGGACCGGTA
1 CATACGGAGTTCATTCCA-GTCTAAG-ATCGGACTGAACCGAGGGTTGTGGCAGCAGGACCAGCA
* * * *
17468612 GTACGCAGAGGGGGACC-GGATCGATCCCCAGCTTCCACATTATGCCTCTCCGGCCGGCTCAGCA
64 GCACGCAG-GGAGGACCAGG-CCGATCCCCAGCTTCCACATTAGGCCTCTCCGGCCGGCTCAGCA
*
17468676 CACGCACGCTCATTTCATGGGTTGACTTAGG
127 CACGCACGCCCATTTCATGGGTTGACTTAGG
* * * **
17468707 CATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGCAGGATCAATAG
1 CATACGGAGTTCATTCC-AGTCTAAGATCGGACTGAACCGAGGGTTGTGGCAGCAGGACCAGCAG
* * *
17468772 CACGTAGGGGGGACCGGGCC
65 CACGCAGGGAGGACCAGGCC
17468792 AGTCCTCGAT
Statistics
Matches: 190, Mismatches: 46, Indels: 16
0.75 0.18 0.06
Matches are distributed among these distances:
157 3 0.02
158 62 0.33
159 124 0.65
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (157 bp):
CATACGGAGTTCATTCCAGTCTAAGATCGGACTGAACCGAGGGTTGTGGCAGCAGGACCAGCAGC
ACGCAGGGAGGACCAGGCCGATCCCCAGCTTCCACATTAGGCCTCTCCGGCCGGCTCAGCACACG
CACGCCCATTTCATGGGTTGACTTAGG
Found at i:17469260 original size:26 final size:26
Alignment explanation
Indices: 17469224--17469273 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17469214 GCTTAGGCAT
17469224 ACGGAGTTCATTCC-ATGTCTAAGAAA
1 ACGGAGTTCATTCCGA-GTCTAAGAAA
17469250 ACGGAGTTCATTCCGAGTCTAAGA
1 ACGGAGTTCATTCCGAGTCTAAGA
17469274 TCGGATCGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
ACGGAGTTCATTCCGAGTCTAAGAAA
Found at i:17469415 original size:182 final size:183
Alignment explanation
Indices: 17469150--17469611 Score: 556
Period size: 182 Copynumber: 2.5 Consensus size: 183
17469140 ATCGAGCGAT
* * * * *
17469150 CCCGACTTAAGTGCATTCTGCCTTTCC-GCCGGCTGAGCGCGCCGCA-ACTCGTTTCGTGGGTTG
1 CCCGACTT-A-TGCAGTCTGCCTCTCCGGCCAGCTGAGCAC-CCGCACACCCGTTTCGTGGGTT-
*
17469213 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAAAACGGAGTTCATTCCGAGTCTAAGATCGG
62 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAAAACGGAGTTCATTCCGAGTCTAAGATCAG
* * *
17469278 ATCGGACCGAGGGTTACGACAGCAGGATCGACAGCATGCAGGGGGTCTC-GGT-TATC
127 ATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGAC-CGGGTCCATC
* * * * ** * *
17469334 CCCGGCTTGTGCAGTCTGCCTCTCTGGCCAGCTGAGCGCTTGCATACCCGTTTCGTGGGTTAGCT
1 CCCGACTTATGCAGTCTGCCTCTCCGGCCAGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCT
* * * * *
17469399 TAGGCATACAGAGTTCATCCCCA-GTCTAAGTATACGGAGTTCATTCTGAGTCTAAGATCAGATC
66 TAGGCATACGGAGTTCAT-TCCATGTCTAAGAAAACGGAGTTCATTCCGAGTCTAAGATCAGATC
* *
17469463 GGACTGAGGGTTACGACAGTAGGATCGACAGCACGCAGGGGGACCGGGTCCATC
130 GGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGACCGGGTCCATC
* * * * * *
17469517 CTCGACTTATGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACGCCCGTTTCATGGGTTGGCT
1 CCCGACTTATGCAGTCTGCCTCTCCGGCCAGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCT
*
17469582 TAGGCATAGGGAGTTCATTCCATGTCTAAG
66 TAGGCATACGGAGTTCATTCCATGTCTAAG
17469612 CCCCAGCCGG
Statistics
Matches: 234, Mismatches: 38, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
181 1 0.00
182 119 0.51
183 107 0.46
184 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (183 bp):
CCCGACTTATGCAGTCTGCCTCTCCGGCCAGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGAAAACGGAGTTCATTCCGAGTCTAAGATCAGATCG
GACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGACCGGGTCCATC
Found at i:17470120 original size:318 final size:318
Alignment explanation
Indices: 17469447--17470280 Score: 932
Period size: 318 Copynumber: 2.6 Consensus size: 318
17469437 GTTCATTCTG
* ** * * *
17469447 AGTCTAAGATCAGATCGGACTGAGGGTTACGACAGTAGGATCGACAGCACGCAG-G-GGGACCGG
1 AGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCAGGATCAACAACACGCAGAGAGGGACCGG
** * * * * * * *
17469510 G-TCCATCCTCGACTTATGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACGCCCGTTTCATG
66 GCT-GGTCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAAGTCCGTTTCATG
* *
17469574 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAG
130 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
* ** *
17469639 CGGGACTGGCATGACACAGAAGGGGACCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTTCGAC
195 CGGGACAGGCATGACACAGAAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGAC
* * *
17469704 TGGCTCAAAACCCGAACGCTCGTTTCATGAGTTGACTTAGGCATACGAAGTTCACTCCC
260 CGACTCAAAACCCGAACGCTCATTTCATGAGTTGACTTAGGCATACGAAGTTCACTCCC
* * * * ** * *
17469763 AGTCTAAGATCAGACTGGATCAAGGGTTGCGATAGCAGGATTGACAGCTCGCA-AG-GGCAGA-C
1 AGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCAGGATCAACAACACGCAGAGAGG--GACC
* * * *
17469825 TGGCTCGGTGCC-CGGTTTACGCATTCTGCCTTTCCGGTCGGTTGAGCGCCCGCAAGTCCGTTTC
64 GGGCT-GGT-CCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAAGTCCGTTTC
* *
17469889 ATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
127 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
* * **
17469954 CAGCGGGACAGGCA-GCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTC
192 CAGCGGGACAGGCATG-ACACAGAAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTC
*** * * * * *
17470018 CGACCGACTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
256 CGACCGACTCAAAACCCGAACGCTCATTTCATGAGTTGACTTAGGCATACGAAGTTCACTCCC
* * * *
17470081 AGTCTAAGATC-GAACCGGACCGAGGGTTATGGCAGCAGGATCAACAACACGTAGAGAGGGACCG
1 AGTCTAAGATCAG-ACCGGACCAAGGGTTACGACAGCAGGATCAACAACACGCAGAGAGGGACCG
* * * ** * * *
17470145 GGCTGGTCCTTGGCTTGCACATTCTGCCTCTCCTATCGACTGAGCGCCCGCATGGT-CGTTTCGT
65 GGCTGGTCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCA-AGTCCGTTTCAT
* * *
17470209 GGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGGGGCA
129 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
*
17470274 GCAGGAC
194 GCGGGAC
17470281 CGGCCATGGG
Statistics
Matches: 430, Mismatches: 76, Indels: 22
0.81 0.14 0.04
Matches are distributed among these distances:
316 46 0.11
317 7 0.02
318 364 0.85
319 11 0.03
320 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (318 bp):
AGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCAGGATCAACAACACGCAGAGAGGGACCGG
GCTGGTCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAAGTCCGTTTCATGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
GGGACAGGCATGACACAGAAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACC
GACTCAAAACCCGAACGCTCATTTCATGAGTTGACTTAGGCATACGAAGTTCACTCCC
Found at i:17470274 original size:159 final size:158
Alignment explanation
Indices: 17469528--17470280 Score: 525
Period size: 159 Copynumber: 4.7 Consensus size: 158
17469518 TCGACTTATG
* * * * * ** * *
17469528 CATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
1 CATTATGCCTCTCCGACCGACTGAGCGCCCGCA-GGTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * ** *
17469593 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAGCGGGACTGGCATGACACAG
65 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACAGACAACACGCAG
** ** *
17469658 A-AGGGGACCGGGTTGATCCCCAGCTTGCG
130 AGA-GGGACCGGGCCGATCCCTGGCTTGCA
* * * * *** * * * * * *
17469687 CATTATGCCTCTTCGACTGGCTCAAAACCCGAACGCTCGTTTCATGAGTTGACTTAGGCATACGA
1 CATTATGCCTCTCCGACCGACTGAGCGCCCGCA-GGTCGTTTCGTGGGTTGGCTTAGGCATACGG
* ** * * * * ** ** * *
17469752 AGTTCACTCCCA-GTCTAAG-ATCAGACTGGATCAAGGGTTGCGATAGCAGGATTGACAGCTCGC
65 AGTTCA-TTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGACAGACAACACGC
* * * * *
17469815 A-AG-GGCAGA-CTGGCTCGGTGCCC-GGTTTACG
128 AGAGAGG--GACCGGGC-CGAT-CCCTGGCTTGCA
* * ** ** * * * *
17469846 CATTCTGCCTTTCCGGTCGGTTGAGCGCCCGCAAGTCCGTTTCATGGATTGGCTTAGGCATAGGG
1 CATTATGCCTCTCCGACCGACTGAGCGCCCGCAGGT-CGTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
17469911 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACAGGCAGCACGCAG
65 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACAGACAACACGCAG
* *
17469976 AGGGGGACCGGGCCGATCCCTGGCTTGCG
130 AGAGGGACCGGGCCGATCCCTGGCTTGCA
* * * * *
17470005 CATTATGCCTCTCCGACCGACTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGG
1 CATTATGCCTCTCCGACCGACTGAGCGCCCGCA-GGTCGTTTCGTGGGTTGGCTTAGGCATACGG
** * * * *
17470070 AGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTATGGCAGCAGGATCA-ACAACACGT
65 AGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGA-CAGACAACACGC
* * *
17470133 AGAGAGGGACCGGGCTGGTCCTTGGCTTGCA
128 AGAGAGGGACCGGGCCGATCCCTGGCTTGCA
* * * *
17470164 CATTCTGCCTCTCCTATCGACTGAGCGCCCGCATGGTCGTTTCGTGGGTTGGTTTAGGCATACGG
1 CATTATGCCTCTCCGACCGACTGAGCGCCCGCA-GGTCGTTTCGTGGGTTGGCTTAGGCATACGG
*
17470229 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGGGGCAGCAGGAC
65 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGAC
17470281 CGGCCATGGG
Statistics
Matches: 458, Mismatches: 118, Indels: 37
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.00
158 19 0.04
159 413 0.90
160 22 0.05
161 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CATTATGCCTCTCCGACCGACTGAGCGCCCGCAGGTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACAGACAACACGCAGA
GAGGGACCGGGCCGATCCCTGGCTTGCA
Found at i:17470651 original size:26 final size:26
Alignment explanation
Indices: 17470621--17470672 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17470611 GTTGACATAG
*
17470621 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17470647 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17470673 AATCAGACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17471105 original size:158 final size:156
Alignment explanation
Indices: 17470647--17471148 Score: 562
Period size: 158 Copynumber: 3.2 Consensus size: 156
17470637 CCCAGTCTAA
* *
17470647 GCATATGGAGTTCATTCCCAGTCTAAAATCAGACTAGACCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
17470712 GCATGTAGGAGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATCCGCTGAGCGCC
66 GCACGTGGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGCTGAGCGCC
* * *
17470777 C-CTACACCCGTTTCATGCATTGGCTTAG
130 CGC-ACGCTCGTTTCATG-GTTGGCTTAG
* * ** * ** *
17470805 GGATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGTGGGGTCGA
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACTAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * *
17470868 CAGCACGTAGAGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGC
64 CAGCACGT-GGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACC-GCTGAGC
* *
17470933 GCTCGCACGCTCGTTTCATAGGTTGACTTAG
127 GCCCGCACGCTCGTTTCAT-GGTTGGCTTAG
* * * * * *
17470964 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCCACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAGGATCGACA
* *
17471029 GCACGTGGGGGGGAACGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
66 GCACGTGGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG-CTGAGCGCC
17471094 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCAT-GGTTGGCTTAG
* *
17471122 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATATGGAGTTCATTCCCA-GTCTAAG
17471149 CATACAGAGT
Statistics
Matches: 283, Mismatches: 51, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
157 7 0.02
158 152 0.54
159 119 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTGGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTGAGCGCCC
GCACGCTCGTTTCATGGTTGGCTTAG
Found at i:17471152 original size:26 final size:26
Alignment explanation
Indices: 17471122--17471174 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17471112 GTTGGCTTAG
17471122 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
17471148 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17471174 G
1 G
17471175 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17472556 original size:158 final size:157
Alignment explanation
Indices: 17472280--17472565 Score: 380
Period size: 158 Copynumber: 1.8 Consensus size: 157
17472270 TGCGGCAATA
* *
17472280 GGATCGACAGCACGCAAGGGGGATCAGGCCGATCCCGGCTTGCTCATTTTGCCTCTCCGACTGAC
1 GGATCGACAGCACGCAAGGGGGATCAGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACTGAC
* * *** *
17472345 TGAGCACCTACATGCCCATTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
66 TAAGCACCTACACGCCCATTTAGTGGGTTGGCTTAGGCATACAAAATTCATTCCATGTCTAAGCA
17472410 GCAACCGGACCAAGGGTTGTGGCAGTG
131 GCAACCGGACCAAGGGTTGTGGCAGTG
* **
17472437 GGATCGACAG-ATGCAGAGGGGGATC-GAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTT
1 GGATCGACAGCACGCA-AGGGGGATCAG-GCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACT
* * * *
17472500 GGCTAAGCACC-AGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAATTGATTCCATGTCTA
63 GACTAAGCACCTA-CACGCCCATTTAGTGGGTTGGCTTAGGCATACAAAATTCATTCCATGTCTA
17472564 AG
127 AG
17472566 TCCCAGTTGG
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
156 5 0.05
157 29 0.26
158 76 0.69
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GGATCGACAGCACGCAAGGGGGATCAGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACTGAC
TAAGCACCTACACGCCCATTTAGTGGGTTGGCTTAGGCATACAAAATTCATTCCATGTCTAAGCA
GCAACCGGACCAAGGGTTGTGGCAGTG
Found at i:17473065 original size:341 final size:343
Alignment explanation
Indices: 17472387--17473065 Score: 732
Period size: 343 Copynumber: 2.0 Consensus size: 343
17472377 TTAGGCATAG
* * ** * *
17472387 GGAGTTCATTCCATGTCTAAGCAGCAACCGGACCAAGGGTTGTGGCAGTGGGATCGACAGATGCA
1 GGAGTTCATTCCATGTCTAAGCAGCAACCAGACCAAGGGTTGCGGCAGCAGGATCAACAGACGCA
* * ** *
17472452 GAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTTGGCTAAGCACCAGCACG
66 GAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACCAGCACG
* * * * *
17472517 CTCATTTCGTGGGTTGGCTTAGGCATACAAAATTGATTCCATGTCTAAGTCCCAGTTGGACCGAG
131 CTCATTTCATGGGTTGGCTTAGGCATACAAAATTCAGTCCATGTCTAAGCCCCAGCTGGACCGAG
*** * *
17472582 GGTTACGGCAACAGGATTGGCAGCATGCAAAGGGGGACCGGGTCGATCCCCGACTTACGCATTAT
196 GGTTACGGCAACAGGACCAGCAGCACGCAAAGGGGGACCGGGCCGATCCCCGACTTACGCATTAT
* ** **
17472647 GCCTCTCCGACCGACTCAGTGATTGAACGCTCATTTCGTGGGTTGACTTTGGCATACGGAGTTCA
261 GCCTCTCCGACCGACTCAGTCACCGAACGCTCATTTAATGGGTTGACTTTGGCATACGGAGTTCA
17472712 TTCCCAGTCTAAGCACGC
326 TTCCCAGTCTAAGCACGC
* **
17472730 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCAACAAGAC
1 GGAGTTCATT-CCATGTCTAAGCAGCA-ACCAGACCAAGGGTTGCGGCAGCAGGATCAAC-AGAC
* *
17472793 GCAG-GGGGGACCAAGCCGATCCCCAGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCACCCA-
63 GCAGAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCA-CCAG
* *****
17472856 CACGC-CCTTTCATGGGTTGGCTTAGGCATAGGGCGTTCAGTCCATGTCTAAGCCCCAGCTGGAC
127 CACGCTCATTTCATGGGTTGGCTTAGGCATACAAAATTCAGTCCATGTCTAAGCCCCAGCTGGAC
* * * * ** *
17472920 TGAGGGTTGTC-GCAGCAGGACCAGTAGCACG-TGAGGGGGACCGGGCCGATCCCC-AGCTTGCG
192 CGAGGGTT-ACGGCAACAGGACCAGCAGCACGCAAAGGGGGACCGGGCCGATCCCCGA-CTTACG
* * ** * * * *
17472982 CATTATGCCTTTTCGATTGGCTCAG-CACCCGCACGCTCGTTTAATGGGTTGACTTAT-GCATAT
255 CATTATGCCTCTCCGACCGACTCAGTCA-CCGAACGCTCATTTAATGGGTTGACTT-TGGCATAC
17473045 GGAGTTCATTCCTC-GTCTAAG
318 GGAGTTCATTCC-CAGTCTAAG
17473066 ATTGGACCGG
Statistics
Matches: 275, Mismatches: 52, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
340 2 0.01
341 90 0.33
342 74 0.27
343 96 0.35
344 13 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (343 bp):
GGAGTTCATTCCATGTCTAAGCAGCAACCAGACCAAGGGTTGCGGCAGCAGGATCAACAGACGCA
GAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACCAGCACG
CTCATTTCATGGGTTGGCTTAGGCATACAAAATTCAGTCCATGTCTAAGCCCCAGCTGGACCGAG
GGTTACGGCAACAGGACCAGCAGCACGCAAAGGGGGACCGGGCCGATCCCCGACTTACGCATTAT
GCCTCTCCGACCGACTCAGTCACCGAACGCTCATTTAATGGGTTGACTTTGGCATACGGAGTTCA
TTCCCAGTCTAAGCACGC
Found at i:17473131 original size:500 final size:498
Alignment explanation
Indices: 17472180--17473252 Score: 1087
Period size: 500 Copynumber: 2.1 Consensus size: 498
17472170 CGCACGCTTG
* * * * **
17472180 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGGCTAAGCATGTGGAGTCCAAACCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAG
* * * *
17472245 TCTAAGATCGAACCAGACTGAAGGTTGCGGCAATAGGATCGACAGCACGCAAGGGGGATCAGGCC
66 TCTAAGATCGAACCAGACTGAAGGTTGCGGCAACAGGATCAACAGCACGCAAGGGGGACCAAGCC
* * * *
17472310 GATCCCGGCTTGCTCATTTTGCCTCTCCGACTGACTGAGCACCTACATGCCCATTTAGTGGGTTG
131 GATCCCAGCTTGCTCATTCTGCCTCTCCGACTGACTGAGCACCCACACGCCCATTTAGTGGGTTG
* * * **
17472375 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCAGCAACCGGACCAAGGGTTGTGGCAGTGGGA
196 GCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCACCAACCGGACCAAGGGTTGTCGCAGCAGGA
* ** * *
17472440 TCGACAGATGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTTGGCTA
261 TC-ACAGATGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATTGGCTA
** * *
17472505 AGCACCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAATTGATTCCATGTCTAAGTCCC
325 AGCACCAGCACGCTCATTTAATGGGTTGACTTAGGCATACAAAATTCATTCCATGTCTAAGTCCC
** * * * * *
17472570 AGTTGGACCGAGGGTTACGGCAACAGGATTGGCAGCATGCAAAGGGGGACCGGGTCGATCCCC-G
390 AGCCGGACCGAGGGTTA-GGAAACAGGATCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCAG
* * **
17472634 ACTTACGCATTATGCCTCTCCGACCGACTCAGTGA-TTGAACGCTCA
454 -CTTACGCATTATACCTCTCCGACCGACTCAG-CACCCGAACGCTCA
* *
17472680 TTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCACGCGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAG
* * *
17472745 TCTAAGATC-AGACCAGACTGAGGGTTGCGGCAGCAGGATCAACAAG-ACGCAGGGGGGACCAAG
66 TCTAAGATCGA-ACCAGACTGAAGGTTGCGGCAACAGGATCAAC-AGCACGCAAGGGGGACCAAG
* *
17472808 CCGATCCCCAGCTTGCGT-ATTCTGCCTCTCCG-GTCGGCTGAGCACCCACACGCCC-TTTCA-T
129 CCGAT-CCCAGCTTGC-TCATTCTGCCTCTCCGACT-GACTGAGCACCCACACGCCCATTT-AGT
* * * * **
17472869 GGGTTGGCTTAGGCATAGGGCGTTCAGTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTCGCA
190 GGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCACCAACCGGACCAAGGGTTGTCGCA
* * *
17472934 GCAGGA-C-CAG-TAGCACGTGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTTTTC
255 GCAGGATCACAGAT-GCA---GAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCC
* * * * *** *
17472996 GATTGGCTCAGCACCCGCACGCTCGTTTAATGGGTTGACTTATGCATATGGAGTTCATTCC-TCG
316 GATTGGCTAAGCACCAGCACGCTCATTTAATGGGTTGACTTAGGCATACAAAATTCATTCCAT-G
*** * * * ** *
17473060 TCTAAGATTGGA-CCGGATCGAGGGTT-GTGAAAGCGGGATCGATAGCACGCAGGGGGGGATCGG
380 TCTAAG-TCCCAGCCGGACCGAGGGTTAG-GAAA-CAGGATCGACAGCACGCAAAGGGGGACCGG
** * * * * * * * *
17473123 GCCGATCCCCAGCTTGTGCATTCTACCTTTCTGGCTGGCTGAGCACCCGTACGCTCA
442 GCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGACTCAGCACCCGAACGCTCA
* * * * *
17473180 TTTCATGGGTTGGCTTAGGCATACAGAGTTCAAT-CCATGTCTAAGCATACGGAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATGCGGAGTTCATTCCCA
17473244 GTCTAAGAT
65 GTCTAAGAT
17473253 TTTAAGGCAC
Statistics
Matches: 467, Mismatches: 89, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
496 1 0.00
497 6 0.01
498 1 0.00
499 10 0.02
500 403 0.86
501 45 0.10
502 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (498 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAG
TCTAAGATCGAACCAGACTGAAGGTTGCGGCAACAGGATCAACAGCACGCAAGGGGGACCAAGCC
GATCCCAGCTTGCTCATTCTGCCTCTCCGACTGACTGAGCACCCACACGCCCATTTAGTGGGTTG
GCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCACCAACCGGACCAAGGGTTGTCGCAGCAGGA
TCACAGATGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATTGGCTAA
GCACCAGCACGCTCATTTAATGGGTTGACTTAGGCATACAAAATTCATTCCATGTCTAAGTCCCA
GCCGGACCGAGGGTTAGGAAACAGGATCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCAGCT
TACGCATTATACCTCTCCGACCGACTCAGCACCCGAACGCTCA
Found at i:17473227 original size:26 final size:26
Alignment explanation
Indices: 17473198--17473250 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17473188 GTTGGCTTAG
17473198 GCATACAGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
* *
17473224 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
17473250 G
1 G
17473251 ATTTTAAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:17474264 original size:158 final size:160
Alignment explanation
Indices: 17474044--17474465 Score: 555
Period size: 160 Copynumber: 2.6 Consensus size: 160
17474034 TGGAGGACAG
* * *
17474044 GGCTGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAG-AGCCCGCATGCCCGTTTCAT
1 GGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA-CCCGCACGCCCGTTTCAT
* *
17474108 GGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG-ACCGAGGGTTGTGGC
65 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACCGAGGGTTGTGGC
*
17474172 AAC-GAACCGGCAGCACGCAGAG-GGGACCC
130 AACGGAACCGGCAGCACACAGAGAGGGACCC
* * * * *
17474201 GAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCCCACGCCCATTTCAT
1 G-GCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCAT
* * * * *
17474266 GGGATGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCTAGCCGGAATCGAGGGTTGTGGC
65 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACCGAGGGTTGTGGC
* * *
17474331 AGCGGGATCGGCAGCACACAGAGAGGGACCC
130 AACGGAACCGGCAGCACACAGAGAGGGACCC
* * * * * * *
17474362 GGCCGATCCTCGGCTTGCGTATTCTACCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCATG
1 GGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCATG
*
17474427 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17474466 ATACGGAATT
Statistics
Matches: 226, Mismatches: 34, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
157 1 0.00
158 96 0.42
159 17 0.08
160 104 0.46
161 8 0.04
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.23
Consensus pattern (160 bp):
GGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCATG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACCGAGGGTTGTGGCA
ACGGAACCGGCAGCACACAGAGAGGGACCC
Found at i:17474436 original size:160 final size:158
Alignment explanation
Indices: 17473998--17474465 Score: 582
Period size: 158 Copynumber: 2.9 Consensus size: 158
17473988 GATCAGACCG
* * **
17473998 GACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCATG-GA-GGACAGGGCTGATCCTCGGCTTG
1 GACCGAGGGTTGTGGCAGC-GGATCGGCAGCACGCA-GAGAGGGACCCGGCTGATCCTCGGCTTG
* * * * *
17474061 CGCATTCTGCCTCTTCGGCCGACTGAGAGCCCGCATGCCCGTTTCATGGGTTTGCTTAGGCATAG
64 CGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
*
17474126 GGAGTTCATTCCATGTCTAAGCCCCAGTCA
129 GGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
17474156 GACCGAGGGTTGTGGCAACGAACCGGCAGCACGCAGAG-GGGACCCGAGCTGATCCCCGACTTGC
1 GACCGAGGGTTGTGGCAGCGGATCGGCAGCACGCAGAGAGGGACCCG-GCTGATCCTCGGCTTGC
* * * * *
17474220 GCATTATGCCTCTCCGGCCGGCTGAGCACCCCCACGCCCATTTCATGGGATGGCTTAGGCATAGG
65 GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
* * *
17474285 GAGTTCATTCTATGTCTAAGCCCTAGCCG
130 GAGTTCATTCCATGTCTAAGCCCCAGCCA
* * *
17474314 GAATCGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGAGGGACCCGGCCGATCCTCGGCTTG
1 G-ACCGAGGGTTGTGGCAGC-GGATCGGCAGCACGCAGAGAGGGACCCGGCTGATCCTCGGCTTG
* * * * * *
17474379 CGTATTCTACCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
64 CGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
17474444 GGAGTTCATTCCATGTCTAAGC
129 GGAGTTCATTCCATGTCTAAGC
17474466 ATACGGAATT
Statistics
Matches: 261, Mismatches: 43, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
156 1 0.00
157 20 0.08
158 112 0.43
159 16 0.06
160 104 0.40
161 8 0.03
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GACCGAGGGTTGTGGCAGCGGATCGGCAGCACGCAGAGAGGGACCCGGCTGATCCTCGGCTTGCG
CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:17474468 original size:26 final size:26
Alignment explanation
Indices: 17474438--17474490 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17474428 GTTGGCTTAG
*
17474438 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
17474464 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
17474490 G
1 G
17474491 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:17475191 original size:14 final size:15
Alignment explanation
Indices: 17475172--17475202 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
17475162 TACGGAGTTT
17475172 ATCCCCAGTC-AAGC
1 ATCCCCAGTCTAAGC
17475186 ATCCCCAGTCTAAGC
1 ATCCCCAGTCTAAGC
17475201 AT
1 AT
17475203 ATGGAGTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.29, C:0.39, G:0.13, T:0.19
Consensus pattern (15 bp):
ATCCCCAGTCTAAGC
Found at i:17475513 original size:158 final size:159
Alignment explanation
Indices: 17475351--17475701 Score: 465
Period size: 159 Copynumber: 2.2 Consensus size: 159
17475341 TCGTGGGTTC
*
17475351 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAAT-AGA
1 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAATGAGA
* *
17475415 CCGGCAGCACGCAGAGGGGGACC-GAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACC-GA
66 CCGGCAGCACGCAGAGAGGGACCAG-GCCGATCCCCGACTTGCACATTATGCCTCTCCGACCAG-
17475478 CTGAGCACCCCCACGCCCATTTCATGGGATG
129 CTGAGCACCCCCACGCCCATTTCATGGGATG
* * * * * *
17475509 GCTTAGGCATAGGGAGTTAATTCTATTTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGTGGGA
1 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAATGAGA
* * * * * * *
17475574 TCGGCAGCATGCAGAGAGGGACCAGGCCGATCCTCGGCTTGCATATTCTGCCTCTCCGGCCAGCT
66 CCGGCAGCACGCAGAGAGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCAGCT
* * * * *
17475639 GAGCGCCCGCACGCTCGTTTCATGGGTTG
131 GAGCACCCCCACGCCCATTTCATGGGATG
*
17475668 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17475702 ATACAAAGTT
Statistics
Matches: 165, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
158 55 0.33
159 108 0.65
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAATGAGA
CCGGCAGCACGCAGAGAGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCAGCT
GAGCACCCCCACGCCCATTTCATGGGATG
Found at i:17476561 original size:26 final size:26
Alignment explanation
Indices: 17476532--17476584 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17476522 GTTGGCTTAG
*
17476532 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
17476558 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17476584 G
1 G
17476585 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17477052 original size:156 final size:155
Alignment explanation
Indices: 17476830--17477111 Score: 413
Period size: 156 Copynumber: 1.8 Consensus size: 155
17476820 CAGGATCGAT
* * * *
17476830 AGCACGTAGAGGGGATCAGGCCAATCCCTAGCTTGCGCATTATGCCTCTTCGATCGACTGAGCGC
1 AGCACGCAGAGGGGATCAGGCCAATCCCCAGCTTACGCATTATGCCTCTTCGATCGACTAAGCGC
* *
17476895 CCGCACACCCGTTTCATGGGTTGGCTTAGGCATA-GTGAGTTCATTCCAAGTTTAAGCCCCAATC
66 CCGCACACCCATTTCATGGGTTGGCTTAGGCATACG-GAGTTCATTCCAAGTCTAAGCCCCAATC
17476959 GGACCTAGGGTTGTGGCAGCGGGAGC
130 GGACCTAGGGTTGTGGCAGCGGGAGC
* * * * * *
17476985 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTAAGCG
1 AGCACGCAGA-GGGGATCAGGCCAATCCCCAGCTTACGCATTATGCCTCTTCGATCGACTAAGCG
* *
17477050 CCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
65 CCCGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCA
17477112 GCCAGACCGA
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
155 9 0.08
156 101 0.91
157 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (155 bp):
AGCACGCAGAGGGGATCAGGCCAATCCCCAGCTTACGCATTATGCCTCTTCGATCGACTAAGCGC
CCGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAATCG
GACCTAGGGTTGTGGCAGCGGGAGC
Found at i:17477638 original size:26 final size:26
Alignment explanation
Indices: 17477608--17477660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17477598 GTTGACTTAG
*
17477608 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17477634 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17477660 G
1 G
17477661 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17478449 original size:26 final size:26
Alignment explanation
Indices: 17478419--17478471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17478409 GTTGACTTAG
*
17478419 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17478445 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17478471 G
1 G
17478472 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17479213 original size:157 final size:156
Alignment explanation
Indices: 17478807--17479300 Score: 439
Period size: 157 Copynumber: 3.1 Consensus size: 156
17478797 CTAAGTTTAT
* *
17478807 GGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGCGGCAACAGGATC-AGCAGCACG
1 GGAGTTCATT-CCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAATAGGATCGA-CAGCACG
* ** * * * *
17478871 CAGGGGGGAGT-AGGTTGATCCTCGGCTTGCGCATTCTACCTCTCCTG-CTGGCTGAGCGCCTGC
63 CA-GGGGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACTAGCTTAGCGCCTGC
* * * * *
17478934 ACGCCCATTTCATTGGTTGGCTTAGGCATAG
126 ACGCTCGTTTCATGGGTTGACTTAGGCATAC
** ** * * *
17478965 GGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTTTGGCAATGGGA-CTG-TAGAAC
1 GGAGTTCATTCCA-GTCTAAGATC-AGACCGGA-CGAGGGTTGCGGCAATAGGATC-GACAGCAC
* * * * * *
17479027 GCAGTGGGGGACCGGGCCGATCCCTGGCTTGCGTATTATGCCTCT-CGACTAGCTTAGCGCCTGC
62 GCAG-GGGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTAGCTTAGCGCCTGC
17479091 ACGCTCGTTTCATGGGTTGACTTAGGCATAC
126 ACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * * *
17479122 GGAGTTCATTAACAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACAC
1 GGAGTTCATT-CCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAATAGGATCGACAGCACGC
* * * * **
17479187 AGGGGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGTTGACCACCCACAC
64 AGGGGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTAGCTT-AGCGCCTGCAC
*
17479251 GCTCGTTTCGTGGGTT-ACCTTAGGCATAC
128 GCTCGTTTCATGGGTTGA-CTTAGGCATAC
*
17479280 AGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCA-GTCTAAG
17479301 CCCCAATCGG
Statistics
Matches: 266, Mismatches: 54, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
156 3 0.01
157 137 0.52
158 123 0.46
159 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GGAGTTCATTCCAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAATAGGATCGACAGCACGCAG
GGGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTAGCTTAGCGCCTGCACGCT
CGTTTCATGGGTTGACTTAGGCATAC
Found at i:17479488 original size:26 final size:26
Alignment explanation
Indices: 17479458--17479510 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17479448 GTTGACTTAG
*
17479458 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17479484 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17479510 G
1 G
17479511 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17480647 original size:26 final size:26
Alignment explanation
Indices: 17480617--17480669 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17480607 GTTGACTTAG
17480617 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
17480643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17480669 G
1 G
17480670 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17480961 original size:159 final size:157
Alignment explanation
Indices: 17480643--17481009 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 157
17480633 CCCAATCTAA
* * * *
17480643 GCATACGGAGTTCATTCC-CAGTCTAAG--ATCGAACCGGACCGAGGGTTGTAGCAGTAGGATCG
1 GCATACGAAGTTCATTCCAC-GTCTAAGCCA-C-AGCCGGACCGAGGGTTGTGGCAGTAGGACCG
* * * * * *
17480705 GCAGCACGCAGGGGGGATCGGGTTGATCCCCGGCTTACGCATCTGCCTCTCTGACCGACTGAGCA
63 ACAGCACGCAAGAGGGATCGGGCTGATCCCAGGCTTACGAATCTGCCTCTCTGACCGACTGAGCA
* **
17480770 CCTGCACGCCCATTTTGTGGGTTGGCTTAG
128 CCCGCACGCCCATTTCATGGGTTGGCTTAG
* * * * * * *
17480800 GCATAGGGAGTTTATTCCATGTTTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGACA
1 GCATACGAAGTTCATTCCACGTCTAAGCCACAGCCGGACCGAGGGTTGTGGCAGTAGGACCGACA
* ** * **
17480865 GCACGCAAAGAGGGA-CGGGGCTGATCCTAGGCTTGTGAATTCTGCCTCTCTGATCGGTTGAGCA
66 GCACGC-AAGAGGGATC-GGGCTGATCCCAGGCTTACGAA-TCTGCCTCTCTGACCGACTGAGCA
* *
17480929 CCCGCATGCTCATTTCATGGGTTGGCTTAG
128 CCCGCACGCCCATTTCATGGGTTGGCTTAG
* * *
17480959 GCATACGAAGTTCATTCCACGTCTAAGCCACAGTCGAACCAAGGGTTGTGG
1 GCATACGAAGTTCATTCCACGTCTAAGCCACAGCCGGACCGAGGGTTGTGG
17481010 TAGCAAGACC
Statistics
Matches: 169, Mismatches: 35, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
157 58 0.34
158 23 0.14
159 88 0.52
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCACGTCTAAGCCACAGCCGGACCGAGGGTTGTGGCAGTAGGACCGACA
GCACGCAAGAGGGATCGGGCTGATCCCAGGCTTACGAATCTGCCTCTCTGACCGACTGAGCACCC
GCACGCCCATTTCATGGGTTGGCTTAG
Found at i:17481188 original size:26 final size:26
Alignment explanation
Indices: 17481140--17481192 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17481130 GTTGACTTAG
* *
17481140 GCATACTGAGTTCATTCGGAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
17481166 GCATACAGAGTTCATTTC-CAGTCTAA
1 GCATACAGAGTTCA-TTCGCAGTCTAA
17481192 G
1 G
17481193 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:17481629 original size:158 final size:157
Alignment explanation
Indices: 17481166--17481667 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 157
17481156 CGGAGTCTAA
* * *
17481166 GCATACAGAGTTCATTTCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
17481230 AGCACACAGGAGGGACCAAGCTGATCCTTGTCTCACGCATTCTGCCTCTCTGGCCAACTGAGCAC
64 AGCACGCAGGAGGGACCAAGCTGATCCTCGGCTTACGCATTCTGCCTCTCTGACCAGCTGAGCAC
**
17481295 CCGCACGC-CCATTTTGTGGGTTGGA-TTAG
129 CCGCACGCTCC-TTTCATGGGTT-GACTTAG
* * ** * * * * *
17481324 GCATAGGGAGTTCATTCCATGTCTATGCCCCAG-CAGGACTGAAGGTTGTGGTAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGAC-GAGGGTTGCGGTAGCAGGATC-GA
* ** * *
17481387 CAGCATGCAGAGAGGGACCGGGTTGATCCTCGGCTTACGCATTAC-GCCTCTCT-AGCCAGCTCA
63 CAGCACGCAG-GAGGGACCAAGCTGATCCTCGGCTTACGCATT-CTGCCTCTCTGA-CCAGCTGA
** *
17481450 GTGCCCGCACGCTCATTTCATGGGTTGACTTAG
125 GCACCCGCACGCTCCTTTCATGGGTTGACTTAG
* ** * *
17481483 GCATTCAAAGTTCATTCCCA-GTCTAAGATTAGACCGGATCGAGGGTTGCAGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
17481547 AGCACGCAGGGGGGACCTAGCCGATCCCCGGCTTACACATTCTGCCTCTCTGACCAGTTGAGCAC
64 AGCACGCAGGAGGGACCAAGCTGATCCTCGGCTTACGCATTCTGCCTCTCTGACCAGCTGAGCAC
*
17481612 CCGCACGCTCCTTTCATGGGTTGGCTTAG
129 CCGCACGCTCCTTTCATGGGTTGACTTAG
17481641 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17481668 CATATGGAGT
Statistics
Matches: 269, Mismatches: 59, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 11 0.04
158 138 0.51
159 113 0.42
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGAGGGACCAAGCTGATCCTCGGCTTACGCATTCTGCCTCTCTGACCAGCTGAGCACCC
GCACGCTCCTTTCATGGGTTGACTTAG
Found at i:17481691 original size:26 final size:26
Alignment explanation
Indices: 17481641--17481693 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17481631 GTTGGCTTAG
*
17481641 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17481667 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17481693 G
1 G
17481694 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17482051 original size:26 final size:26
Alignment explanation
Indices: 17482022--17482074 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17482012 ATAGACTTAG
17482022 GCATACAGAGTTCATCACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
** **
17482048 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
17482074 G
1 G
17482075 ATCGAGCTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:17482537 original size:158 final size:159
Alignment explanation
Indices: 17482168--17482544 Score: 433
Period size: 159 Copynumber: 2.4 Consensus size: 159
17482158 CTTCAGCTAG
* * * **
17482168 CTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAGCC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGAA
* * * * *
17482233 CCAGCTGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCACACAGAGGGGGATCGGGCTGATCCCT
66 CCAGCTGGACCAAGGGTTGCGGCAGCAAGACCAGCAGCACACAGAGGGAGACCGGGCCGATCCCT
* *
17482298 GGCTTGGCATATTATGCCTCTTCGGTCGG
131 GGCTTGGCATATTATGCCTCTCCGGTCGA
* * * * *
17482327 CTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTTAA-A
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCAAGA
* * * ** *
17482390 ATCAGACTGGACCAAGGGTTGTGGCTGCAAGA-TTGACAGCACGCAG-GGCGAGACCGGGCCGAT
65 ACCAG-CTGGACCAAGGGTTGCGGCAGCAAGACCAG-CAGCACACAGAGG-GAGACCGGGCCGAT
17482453 CCCTGGCTTGCGCAT-TT-TGCCTCTCCGGTCGA
127 CCCTGGCTTG-GCATATTATGCCTCTCCGGTCGA
* * *
17482485 CTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
17482545 TAAGCATACA
Statistics
Matches: 181, Mismatches: 31, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 68 0.38
159 104 0.57
160 7 0.04
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGAA
CCAGCTGGACCAAGGGTTGCGGCAGCAAGACCAGCAGCACACAGAGGGAGACCGGGCCGATCCCT
GGCTTGGCATATTATGCCTCTCCGGTCGA
Found at i:17482571 original size:26 final size:26
Alignment explanation
Indices: 17482522--17482574 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17482512 GTTGGCTTAG
* *
17482522 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17482548 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
17482574 G
1 G
17482575 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17483278 original size:26 final size:30
Alignment explanation
Indices: 17483243--17483296 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
17483233 ACTTAGGGCA
17483243 TACGGAGTT-CA-T-CC-CCAGTCTAAGCG
1 TACGGAGTTCCATTCCCGCCAGTCTAAGCG
*
17483269 TACGGTGTTCCATTCCCGCCAGTCTAAG
1 TACGGAGTTCCATTCCCGCCAGTCTAAG
17483297 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 8 0.35
27 2 0.09
28 1 0.04
29 2 0.09
30 10 0.43
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.26
Consensus pattern (30 bp):
TACGGAGTTCCATTCCCGCCAGTCTAAGCG
Found at i:17483801 original size:26 final size:26
Alignment explanation
Indices: 17483765--17483817 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17483755 GTTGCCTTAG
17483765 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17483791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17483817 G
1 G
17483818 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17484521 original size:26 final size:26
Alignment explanation
Indices: 17484485--17484537 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17484475 GTTGACTTAG
17484485 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
17484511 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17484537 G
1 G
17484538 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17484811 original size:158 final size:160
Alignment explanation
Indices: 17484649--17485015 Score: 431
Period size: 159 Copynumber: 2.3 Consensus size: 160
17484639 CCCACACGCC
* * * * *
17484649 CGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCTCAG-CCAGACTGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGG
* *
17484713 -TTG-TGGCAGCGGGACCTG-CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTA
66 ATTGCT-GCAGCAGGACC-GACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTA
* * *
17484775 TACCTCTTCAGCCAGCTCAGTGCCCGCACACT
129 TACCTCTACAGCCAGCTAAGCGCCCGCACACT
* * * * * *
17484807 CGTTTCGTGGGTTGACTTATGCATATGAAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCAGACCGAG
* * * * * *
17484870 GATTGCTGCAGTAGGATCGATAGCACGCAGGGGGGGACCGGGCCAATCCCCGGCTTGCGTATTCT
65 GATTGCTGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTAT
* * * *
17484935 GCCTCTACGGCCTGCTAAGCGCCCGCACGCT
130 ACCTCTACAGCCAGCTAAGCGCCCGCACACT
17484966 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
17485016 ACGGAGTTCA
Statistics
Matches: 173, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 50 0.29
159 117 0.68
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGG
ATTGCTGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATA
CCTCTACAGCCAGCTAAGCGCCCGCACACT
Found at i:17485037 original size:26 final size:26
Alignment explanation
Indices: 17484986--17485038 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17484976 GTTGGCTTAG
*
17484986 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
17485012 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
17485038 G
1 G
17485039 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17486228 original size:26 final size:26
Alignment explanation
Indices: 17486192--17486244 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17486182 GTTGGCTTAG
17486192 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
17486218 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17486244 G
1 G
17486245 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17486599 original size:26 final size:26
Alignment explanation
Indices: 17486569--17486621 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17486559 GTTGGCTTAG
17486569 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17486595 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17486621 G
1 G
17486622 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17487095 original size:158 final size:158
Alignment explanation
Indices: 17486595--17487088 Score: 448
Period size: 159 Copynumber: 3.1 Consensus size: 158
17486585 CCCAGTCTAA
* * * *
17486595 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
17486660 GCACAT-AA-GGGGGATCGAGCTGATCCCCGACTTGCTCATTCTGCCTTTTCGATCGGTTGAGCG
66 G--CATGAAGGGGGGATCGAACCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGAG
*
17486723 CCCGTACAC-CCCATTTCGTGGGTTGGCTTAG
129 CCCG--CACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * * *
17486754 GCATAGGGAGTTCATT-CCATGACTAAG-CCCTAGCCGAACTGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATC-G
* * * * * * * * * *
17486816 GCAGCATGCAGAGGGTGATCGAATCGATCCCCGGCTTGTGTATTATGCCTCTCCGGTCGGCTCA-
63 ACAGCATGAAG-GGGGGATCGAACCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* * *
17486880 ACGCCCGAACGCT-AGTTTCATGGGTTGACTTAG
127 A-GCCCGCACGCTCA-TTTCGTGGGTTGGCTTAG
* * *
17486913 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
17486978 GCATGAAGGGGGGACCAAACCGGTCCCCGACTTGCGCATTCTGCCTCTCCGA-CTGGCTGAGAGC
66 GCATGAAGGGGGGATCGAACCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC-GGCTGAGAGC
17487042 CCGCACGCTCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
17487071 CCTTACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
17487089 ATGTCTAGGC
Statistics
Matches: 256, Mismatches: 64, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
157 4 0.02
158 90 0.35
159 113 0.44
160 49 0.19
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGAAGGGGGGATCGAACCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGAGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Done.