Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 151 of 402
Found at i:17487299 original size:196 final size:197
Alignment explanation
Indices: 17486964--17487344 Score: 529
Period size: 196 Copynumber: 1.9 Consensus size: 197
17486954 AGGGTTGCGA
* * *
17486964 CAGTAGGATCGACAGCATGAAGGGGGGACCAAACCGGTCCCCGACTTGCGCATTCTGCCTCTCCG
1 CAGTAGGATCGACAACATGAAGGGGGGACCAAACCGATCCCCGACTTGCGCATTCTGCCTCTACG
* *
17487029 ACTGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCCTTACGGAGTTCATTCCATGTC
66 ACTGGCTAAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCCTTACGGAGTTCATCCCATGTC
*
17487094 TAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACC
131 TAAGCATACGGAGTTCATTCCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACC
17487158 AG
196 AG
* * ** * * *
17487160 CAGTAGGATCGACAACATGCATGGGGGTTCAGACTGATCCCCTG-CTTGCGTATTCTGCCTCTAC
1 CAGTAGGATCGACAACATGAAGGGGGGACCAAACCGATCCCC-GACTTGCGCATTCTGCCTCTAC
* * * * *
17487224 GA-TCGGCTAAGTGGCCGCACGCTCGTTTTGTGGGTTGGCTTAG-GTATACGGAGTTCATCCCCA
65 GACT-GGCTAAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCCT-TACGGAGTTCAT-CCCA
17487287 -GTCTAAGCATACGGAGTTCATTCCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
127 TGTCTAAGCATACGGAGTTCATTCCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
17487345 ATAGTAGGAT
Statistics
Matches: 162, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
195 2 0.01
196 121 0.75
197 39 0.24
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (197 bp):
CAGTAGGATCGACAACATGAAGGGGGGACCAAACCGATCCCCGACTTGCGCATTCTGCCTCTACG
ACTGGCTAAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCCTTACGGAGTTCATCCCATGTC
TAAGCATACGGAGTTCATTCCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACC
AG
Found at i:17487305 original size:26 final size:27
Alignment explanation
Indices: 17487269--17487320 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
17487259 TGGCTTAGGT
17487269 ATACGGAGTTCA-TCCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCCAGTCTAAGC
17487295 ATACGGAGTTCATTCCCCAGTCTAAG
1 ATACGGAGTTCATTCCCCAGTCTAAG
17487321 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (27 bp):
ATACGGAGTTCATTCCCCAGTCTAAGC
Found at i:17487648 original size:26 final size:26
Alignment explanation
Indices: 17487612--17487664 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17487602 GTTGGCTTAG
*
17487612 GCATCCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17487638 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17487664 G
1 G
17487665 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17488225 original size:158 final size:160
Alignment explanation
Indices: 17488063--17488439 Score: 406
Period size: 158 Copynumber: 2.4 Consensus size: 160
17488053 TCGGTTGAGT
* * * *
17488063 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGC
1 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGA
* * * *
17488128 T-GGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCA-GAGGGGGATCGGCT-GATCCCC-AG
66 TCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCATG-GGGGGATCGGCTCGATCCCCGA-
* ** * * *
17488189 TTTGCGCATTATGCCTCTCTGGCTAGCTCAGC
129 CTTGCGCATTACACCTCTCCGACCAGCTCAGC
* * * * * *
17488221 GCCCGCACGCCCGTTTCTTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTTTAAG-ATCAT
1 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCACCAG
** * * * * *
17488284 ATCAGATTGAGTGTTGCGTCAGCAGGATCGACAGCACGCATGGGGGGATCGGGTCGGTCCCCGAC
65 ATCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCATGGGGGGATCGGCTCGATCCCCGAC
* * *
17488349 TTGCGCATTCCACCTCTCCGACCAGTTGAGC
130 TTGCGCATTACACCTCTCCGACCAGCTCAGC
*
17488380 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
1 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
17488440 TACAAAGTTA
Statistics
Matches: 178, Mismatches: 34, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 91 0.51
159 82 0.46
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGA
TCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCATGGGGGGATCGGCTCGATCCCCGACT
TGCGCATTACACCTCTCCGACCAGCTCAGC
Found at i:17488817 original size:26 final size:26
Alignment explanation
Indices: 17488787--17488839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17488777 GTTCACTTAG
17488787 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17488813 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17488839 G
1 G
17488840 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17490780 original size:158 final size:159
Alignment explanation
Indices: 17490538--17490980 Score: 500
Period size: 158 Copynumber: 2.8 Consensus size: 159
17490528 ACAGCAGGAT
* * * * * * * *
17490538 CGGCAGCACGCA-TGGAGGACAGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTG
1 CGGCAGCACGCAGAGGGGGACCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGACGGCTG
* *
17490602 AG-AGCCCGCATGCCCGTTTCATGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
66 AGCA-CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
*
17490666 CAGTCAGACCGAGGGTTGTGGCAAC-GAAC
130 CAGCCAGACCGAGGGTTGTGGCAACGGAAC
* * *
17490695 CGGCAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTG
1 CGGCAGCACGCAGAGGGGGACCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGACGGCTG
* * * * **
17490760 AGCACCCCCACGCCCATTTCATGGGATGGCTTAGGCGTAGGGAGTTCATTTTATGTCTAAGCCCC
66 AGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* ** * * * *
17490825 AGCCGGATTGAGGGTTGTGGTAGCGGGAT
131 AGCCAGACCGAGGGTTGTGGCAACGGAAC
* * * *
17490854 CGGCAGCACGCAGAGAGGGACCCGA-CCGATCCTCGGCTTGCGTATTTTGCCTCTCC-GACTGGC
1 CGGCAGCACGCAGAGGGGGA-CCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGAC-GGC
* ** **
17490917 TGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
64 TGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17490981 ATACGAAATT
Statistics
Matches: 237, Mismatches: 44, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
157 12 0.05
158 117 0.49
159 104 0.44
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (159 bp):
CGGCAGCACGCAGAGGGGGACCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGACGGCTG
AGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGCCAGACCGAGGGTTGTGGCAACGGAAC
Found at i:17491707 original size:14 final size:15
Alignment explanation
Indices: 17491688--17491718 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
17491678 TACGGAGTTT
17491688 ATCCCCAGTC-AAGC
1 ATCCCCAGTCTAAGC
17491702 ATCCCCAGTCTAAGC
1 ATCCCCAGTCTAAGC
17491717 AT
1 AT
17491719 ATGGAGTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.29, C:0.39, G:0.13, T:0.19
Consensus pattern (15 bp):
ATCCCCAGTCTAAGC
Found at i:17492248 original size:26 final size:26
Alignment explanation
Indices: 17492218--17492270 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17492208 GCTGGCTTAG
* *
17492218 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
17492244 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
17492270 G
1 G
17492271 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:17493313 original size:26 final size:26
Alignment explanation
Indices: 17493284--17493336 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17493274 GTTGACTTAG
*
17493284 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17493310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17493336 G
1 G
17493337 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17493638 original size:159 final size:157
Alignment explanation
Indices: 17493310--17493710 Score: 417
Period size: 158 Copynumber: 2.5 Consensus size: 157
17493300 CCCAGTCTAA
* *** * * * **
17493310 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTACGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCAAGTCTAAG-CCCAACCGGACCGAGGGTTATGGCAGCAGGACCGGCA
* * * * *
17493375 GCACGCAGAGGGGATCAGGCCAAACCCTAGCTTGCGCATTCTGCCTCTCCGATTGACTGAGCGCT
65 GCACGCAGAGGGGATCAGGCCAAACCCCAGCTTACGCATTCTGCCTCTCCGATCGACTAAGCGCC
* * *
17493440 CGTACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCCCATTTCATGGGTTGGCTTAG
* * * *
17493468 GCAT-GGCGAGTTCATTCCAAGTCTAAGCCCCAATCGGACCTAGGGTTGTGGCAGCAGGACCGGC
1 GCATACG-GAGTTCATTCCAAGTCTAAG-CCCAACCGGACCGAGGGTTATGGCAGCAGGACCGGC
* * * * * * * *
17493532 AGCATGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTAAGCG
64 AGCACGCAGA-GGGGATCAGGCCAAACCCCAGCTTACGCATTCTGCCTCTCCGATCGACTAAGCG
*
17493597 CCCGCACGCTCATTTCATGGGTTGGCTTAG
128 CCCGCACGCCCATTTCATGGGTTGGCTTAG
* * * *
17493627 GCATACGGAGTTCATTCCATGTCTAAGCCCAGCCAGACCGAGGGTTATGGCAACAGGACCGGCAG
1 GCATACGGAGTTCATTCCAAGTCTAAGCCCAACCGGACCGAGGGTTATGGCAGCAGGACCGGCAG
* **
17493692 TACTTAGAGGGAGATCAGG
66 CACGCAGAGGG-GATCAGG
17493711 TCGATCCCTG
Statistics
Matches: 195, Mismatches: 44, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
157 4 0.02
158 99 0.51
159 91 0.47
160 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAAGTCTAAGCCCAACCGGACCGAGGGTTATGGCAGCAGGACCGGCAG
CACGCAGAGGGGATCAGGCCAAACCCCAGCTTACGCATTCTGCCTCTCCGATCGACTAAGCGCCC
GCACGCCCATTTCATGGGTTGGCTTAG
Found at i:17494193 original size:26 final size:27
Alignment explanation
Indices: 17494153--17494206 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
17494143 GTTGACTTAG
*
17494153 GCATACCGTAGTTCATCCCCAGTCTAA
1 GCATACCGAAGTTCATCCCCAGTCTAA
*
17494180 GCATA-CGAAGTTCATTCCCAGTCTAA
1 GCATACCGAAGTTCATCCCCAGTCTAA
17494206 G
1 G
17494207 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (27 bp):
GCATACCGAAGTTCATCCCCAGTCTAA
Found at i:17495653 original size:157 final size:157
Alignment explanation
Indices: 17495456--17495830 Score: 395
Period size: 157 Copynumber: 2.4 Consensus size: 157
17495446 CAGCTGAGTG
* * * *
17495456 CCTGCACGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-C
1 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGAC
** * * **
17495520 CAGACCGAGGGTTTTGGCAATGGGA-CTG-TAGAACGCAGTGGGGGACCGGGTCGATCCCTGGCT
65 CAGACCGAGGGTTGCGGCAATAGGATC-GACAGAACGCAG-GGGGGACCGGACCGATCCCTGGCT
* *
17495583 TGCAT-ATTATGCCTCT-CGACCAGCTTAGCA
128 T--ATCATTATGCCTCTCCGACCAGCTGACCA
**
17495613 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACA-GTCTAAGATCAGAC
1 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCAGAC
* * * * **
17495677 CGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGATTGGACCGATCCCTGGCTTA
65 CAGACCGAGGGTTGCGGCAATAGGATCGACAGAACGCAGGGGGGACCGGACCGATCCCTGGCTTA
* ** *
17495742 TGCATTCTGCCTCTCCGGTCGGCTGACCA
130 T-CATTATGCCTCTCCGACCAGCTGACCA
* *
17495771 -CTCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC
1 CCT-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
17495831 CAATCGGACT
Statistics
Matches: 181, Mismatches: 28, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
155 2 0.01
156 2 0.01
157 107 0.59
158 70 0.39
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACC
AGACCGAGGGTTGCGGCAATAGGATCGACAGAACGCAGGGGGGACCGGACCGATCCCTGGCTTAT
CATTATGCCTCTCCGACCAGCTGACCA
Found at i:17496031 original size:26 final size:27
Alignment explanation
Indices: 17495995--17496048 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
17495985 TTGAACTTAG
* *
17495995 GCATACGGAGTTCATC-CCCAGTTTAA
1 GCATACAGAGTTCATCTCCCAATTTAA
17496021 GCATACAGAGTTCATCTCCCAATTTAA
1 GCATACAGAGTTCATCTCCCAATTTAA
17496048 G
1 G
17496049 AATCAGATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
GCATACAGAGTTCATCTCCCAATTTAA
Found at i:17496055 original size:26 final size:26
Alignment explanation
Indices: 17495997--17496055 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
17495987 GAACTTAGGC
* * *
17495997 ATACGGAGTTCATCCCCAGTTTAAGC
1 ATACAGAGTTCATCCCCAATTTAAGA
17496023 ATACAGAGTTCATCTCCCAATTTAAGA
1 ATACAGAGTTCATC-CCCAATTTAAGA
17496050 AT-CAGA
1 ATACAGA
17496056 TCGGACCGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 17 0.59
27 12 0.41
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATTTAAGA
Found at i:17497214 original size:26 final size:26
Alignment explanation
Indices: 17497184--17497236 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17497174 GTTGACTTAG
17497184 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
17497210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17497236 G
1 G
17497237 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17497754 original size:26 final size:26
Alignment explanation
Indices: 17497706--17497758 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17497696 GTTGACTTAG
* *
17497706 GCATACTGAGTTCATTCGGAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
17497732 GCATACAGAGTTCATTTC-CAGTCTAA
1 GCATACAGAGTTCA-TTCGCAGTCTAA
17497758 G
1 G
17497759 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:17498258 original size:26 final size:26
Alignment explanation
Indices: 17498208--17498260 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17498198 GTTGGCTTAG
*
17498208 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17498234 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17498260 G
1 G
17498261 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17498617 original size:26 final size:26
Alignment explanation
Indices: 17498588--17498640 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17498578 ATAGACTTAG
17498588 GCATACAGAGTTCATCACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
** **
17498614 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
17498640 G
1 G
17498641 ATCGAGCTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:17498973 original size:158 final size:159
Alignment explanation
Indices: 17498744--17499109 Score: 382
Period size: 158 Copynumber: 2.3 Consensus size: 159
17498734 CTGAGTGCCC
* * * ** * *
17498744 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCAAGCCCCAGTTGGA
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCAAAACCAAATTGGA
** * * * * * * * **
17498808 CTGAGGGTTGCGGCAGTAGGACCAG-CAGCACGTAGAGG-GGGATCGGGCTGATCCCTGGCTTGC
66 CCAAGGGTTACAGCAGCAAGA-CAGACAGCACGTAG-GGTGAGACCGAGCCAATCCCTGGCTTGC
* * * *
17498871 GCATTATGCCTTTTCAGTCGGCTCAGCGCTT
129 GCATTATGCCTCTCCAGTCGACTCAGCGCAT
* * * * *
17498902 GTACGCTCGTTTCATGGGTTGGCTTATGCATATGGAGTTCATTCCCA-GTTAAAATCAAATTGGA
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCAAAACCAAATTGGA
* **
17498966 CCAAGGGTTACAGCTGCAAGATTGACAGCACGTAGGGTGAGACCGAGCCAATCCCTGGCTTGCGC
66 CCAAGGGTTACAGCAGCAAGACAGACAGCACGTAGGGTGAGACCGAGCCAATCCCTGGCTTGCGC
* *
17499031 ATTCTGCCTCTCCAGTCGACTGAGCGCAT
131 ATTATGCCTCTCCAGTCGACTCAGCGCAT
*
17499060 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTC
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTC
17499110 TAAGCATACA
Statistics
Matches: 168, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
157 6 0.04
158 159 0.95
159 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (159 bp):
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCAAAACCAAATTGGA
CCAAGGGTTACAGCAGCAAGACAGACAGCACGTAGGGTGAGACCGAGCCAATCCCTGGCTTGCGC
ATTATGCCTCTCCAGTCGACTCAGCGCAT
Found at i:17499123 original size:26 final size:26
Alignment explanation
Indices: 17499087--17499139 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17499077 GTTGGCTTAG
*
17499087 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17499113 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17499139 G
1 G
17499140 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17500153 original size:159 final size:159
Alignment explanation
Indices: 17499874--17500337 Score: 442
Period size: 158 Copynumber: 2.9 Consensus size: 159
17499864 GGATCGGACA
* *** *
17499874 AAGGGTTGC-GACAGCAGGATCGACAGCATGCAGGAGGG-ATCGGGCCGATCCCC-AGCTTGCAC
1 AAGGGTTGCAG-CAGCAGGATCGACACCACATAGG-GGGCACCGGGCCGATCCCCGA-CTTGCAC
* * * * * * * *
17499936 ATTCTGCCTCTTC-AGTCGGCTGAGCGCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGG
63 ATTATGCCTCTCCGA-TCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
17500000 AGTTCATTCCATGTCTAAGCCCCAG-CCGGACC
127 AGTTCATTCCATGTCTAAGCACCAGACCAGACC
** * * * * * * **
17500032 AAGGGTTGTGGCAGCGGGA-CTGGCACCACGTAGAGGTGCACTGGGTCGATCCCCGACTTGTGCA
1 AAGGGTTGCAGCAGCAGGATC-GACACCACATAG-GGGGCACCGGGCCGATCCCCGACTTGCACA
* *
17500096 TTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAG
64 TTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* *
17500161 TTCATCCCCA-GTCTAAG-ATCAGACCAGACC
129 TTCAT-TCCATGTCTAAGCACCAGACCAGACC
* * ** * *
17500191 AAGGGTTGCAGTAGCAGGATCGATAGTACATAGGGGGGACCGGGCCGATCCTCGACTTGCACATT
1 AAGGGTTGCAGCAGCAGGATCGACACCACATAGGGGGCACCGGGCCGATCCCCGACTTGCACATT
* * * *
17500256 CTGCCTCTCCGACCGG-TCGAGCGCCCGCACGCTCATTTCGTGGGTTGCCTTAGGCATACGGAGT
66 ATGCCTCTCCGATCGGCTC-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
17500320 TCATTCCATGTCTAAGCA
130 TCATTCCATGTCTAAGCA
17500338 TACGAAGTTC
Statistics
Matches: 245, Mismatches: 49, Indels: 23
0.77 0.15 0.07
Matches are distributed among these distances:
157 6 0.02
158 119 0.49
159 114 0.47
160 6 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
AAGGGTTGCAGCAGCAGGATCGACACCACATAGGGGGCACCGGGCCGATCCCCGACTTGCACATT
ATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCATGTCTAAGCACCAGACCAGACC
Found at i:17500346 original size:26 final size:26
Alignment explanation
Indices: 17500309--17500361 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17500299 GTTGCCTTAG
*
17500309 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17500335 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17500361 G
1 G
17500362 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17501356 original size:159 final size:160
Alignment explanation
Indices: 17501193--17501560 Score: 388
Period size: 159 Copynumber: 2.3 Consensus size: 160
17501183 CCCACACGCC
* * * *
17501193 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAG-CCAGACTGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGG
* * * * * * *
17501257 GTTATGGCAGCGGGACTAGCA-A-CACGTAGAGGGGG-ACCGGGCCGATCCTCGGCTTGCGCATT
66 GTTATGACAGCAGGA-TAG-ATAGCACGCAG-GGGGGAACCGAGCCAATCCCCAGCTTGCGCATT
* * *
17501319 ATACCTCTTCAGCCAGCTCAGCGCCCGCACACT
128 ATACCTCTCCAACCAGCTCAACGCCCGCACACT
* * * * *
17501352 CGTTTCGTGGGTTGACTTATGCATATGAAGTTCATTCCCA-GTCTAAG-ATCGGACCAGACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCAGACCGAG
* * * * *
17501415 GGTTGTGACAGTAGGATCGATAGCACGCAGGGGGGAACCGAGCCAATCCCCAGCTTGCTCATTCT
65 GGTTATGACAGCAGGATAGATAGCACGCAGGGGGGAACCGAGCCAATCCCCAGCTTGCGCATTAT
* * * * * *
17501480 GCCTCTCCAATCTGCTGAATGCCCGCACGCT
130 ACCTCTCCAACCAGCTCAACGCCCGCACACT
17501511 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
17501561 ACGGAGTTCA
Statistics
Matches: 169, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 14 0.08
159 149 0.88
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (160 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGG
GTTATGACAGCAGGATAGATAGCACGCAGGGGGGAACCGAGCCAATCCCCAGCTTGCGCATTATA
CCTCTCCAACCAGCTCAACGCCCGCACACT
Found at i:17501582 original size:26 final size:26
Alignment explanation
Indices: 17501531--17501583 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17501521 GTTGGCTTAG
*
17501531 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
17501557 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACGGAGTTCATTCCAT-GCCTAA
17501583 G
1 G
17501584 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17502774 original size:26 final size:26
Alignment explanation
Indices: 17502738--17502790 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17502728 GTTGGCTTAG
17502738 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
17502764 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17502790 G
1 G
17502791 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17503147 original size:26 final size:26
Alignment explanation
Indices: 17503117--17503169 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17503107 GTTGACTTAG
17503117 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
17503143 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17503169 G
1 G
17503170 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17503814 original size:195 final size:197
Alignment explanation
Indices: 17503513--17503899 Score: 521
Period size: 195 Copynumber: 2.0 Consensus size: 197
17503503 GGATTGCGGC
* * * * *
17503513 AGTAGGATCGACAGCATGAAGGGGGGGACCAAATCGGTCCTCAGCTTGCGCATTCTGCCTCTCCG
1 AGTAGGATCGACAACATGAAGGGGGGGACCAAATCGATCCCCAGCTTGCGCATTCTACCTCTACG
* * * *
17503578 GTTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
66 ATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GT
* * * *
17503642 CTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA-CTGAGGGTTGTGGCAGTAGGAC
130 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGAGGCAGTAGGAC
17503706 CAGT
194 CAGT
* * *
17503710 AGTAGGATCGACAACATGCA-GGGGGG-TCAAATCGATCCCCTGCTTGCGCATTCTACCTCTACG
1 AGTAGGATCGACAACATGAAGGGGGGGACCAAATCGATCCCCAGCTTGCGCATTCTACCTCTACG
* *** *
17503773 ATCGGTTGAGTGGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATCCCCAGTC
66 ATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTC
* *
17503838 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGAGGTAGTAGGA
131 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGAGGCAGTAGGA
17503900 TCGACAGTAC
Statistics
Matches: 165, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
195 137 0.83
196 10 0.06
197 18 0.11
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.25
Consensus pattern (197 bp):
AGTAGGATCGACAACATGAAGGGGGGGACCAAATCGATCCCCAGCTTGCGCATTCTACCTCTACG
ATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTC
TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGAGGCAGTAGGACCA
GT
Found at i:17503853 original size:26 final size:26
Alignment explanation
Indices: 17503817--17503867 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17503807 TGGCTTAGGT
*
17503817 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
*
17503843 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
17503868 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:17504141 original size:158 final size:158
Alignment explanation
Indices: 17503881--17504184 Score: 369
Period size: 158 Copynumber: 1.9 Consensus size: 158
17503871 GGACCAGATC
* * * * *
17503881 GAGGGTTGAGGTAGTAGGATCGACAGTACGCAGGGGGGACCGGGCCGATCCACGACTTGCGCATT
1 GAGGGTTGAGGCAGTAGGACCGACAGCACACAGGGGGGACCGAGCCGATCCACGACTTGCGCATT
* * * ** *
17503946 CTACCTCTCTGGCCGGCTCAGCACCCGCACGTCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTACCTCTCCGGCCGGCTCAACACCCGCACCTCCATTTCATGGGTTGGCTTAGGCATACGGAGTT
*
17504011 CATTCCATGTTTAAGCCCCAGTCGGACA
131 CATTCCATGTCTAAGCCCCAGTCGGACA
* * * * *
17504039 GAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACCGAGTCGATCC-CGTCTTGCGTAT
1 GAGGGTTGAGGCAGTAGGACCGACAGCACACAG-GGGGGACCGAGCCGATCCACGACTTGCGCAT
* * * * *
17504103 TCTACCTCTCCGGCCGGTTGAACGCCTGCACACT-CATTTCATGGGTTGGCTTAGGCATCCGGAG
65 TCTACCTCTCCGGCCGGCTCAACACCCGCAC-CTCCATTTCATGGGTTGGCTTAGGCATACGGAG
*
17504167 TTCATTCCGTGTCTAAGC
129 TTCATTCCATGTCTAAGC
17504185 ATACGGAGTT
Statistics
Matches: 121, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
158 104 0.86
159 17 0.14
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGGGTTGAGGCAGTAGGACCGACAGCACACAGGGGGGACCGAGCCGATCCACGACTTGCGCATT
CTACCTCTCCGGCCGGCTCAACACCCGCACCTCCATTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGTCGGACA
Found at i:17504191 original size:26 final size:26
Alignment explanation
Indices: 17504157--17504209 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17504147 GTTGGCTTAG
* **
17504157 GCATCCGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17504183 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17504209 G
1 G
17504210 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17505363 original size:26 final size:26
Alignment explanation
Indices: 17505333--17505385 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17505323 GTTGACTTAC
*
17505333 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17505359 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17505385 G
1 G
17505386 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17505984 original size:158 final size:158
Alignment explanation
Indices: 17505359--17506019 Score: 490
Period size: 159 Copynumber: 4.2 Consensus size: 158
17505349 CCCAGTCTAA
* * * * *
17505359 GCATACAGAGTTCATTCCCAT-TCTAAGATCGGACCGGACTGAGGGATGCGGTAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* ** * * * * * * * * *
17505423 AGCACGCAGGACGGATTGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCAGTCGGTTGAGTGC
65 AGCACACAGGGGGGATCGAGCCGATCCCTGACTTGTGCATTATGCCTCTTCGGTCGGCTCAGCGC
* *
17505488 CCGCACACCCGTTTCATGGGTTGGCTTAG
130 CCGCACACTCGTTTCATGGGTTGACTTAG
* * ** * * * * **
17505517 GCATAGGGAGTTCATTCCGTGTCTAAGA-CCCAGCCAAACCGAGGGTTGTGGTAGTAGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGTAGCAGGATCGAC
** * * ** * * *
17505581 AGCATGCAGAGGGGGA-CCAGGCCGAT-CCTCGGCTTACGTATTATGCCTCTTTGG-CTGACTCA
65 AGCACACAG-GGGGGATCGA-GCCGATCCCT-GACTTGTGCATTATGCCTCTTCGGTC-GGCTCA
* * * * * * *
17505643 ACACCCACACGCTCGTTTCTTGGGTTGATTTAT
126 GCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * * * * * * * *
17505676 GCATACGGAGTACATT-CTTAGTGTAAGATCGAACCGGATCGAGAGTTGCGATAGCAAGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * *
17505740 AACACACACAGTGGGACCGGGCCGATCCCTGACTTGCAG-ATTATGCCTCTTCGGCCTGCTCAGC
65 AGCACACA-GGGGGGATCGAGCCGATCCCTGACTTG-TGCATTATGCCTCTTCGGTCGGCTCAGC
* * *
17505804 GCCCTCACACTCGTTTCATGGGTTAACTTAT
128 GCCCGCACACTCGTTTCATGGGTTGACTTAG
* * *
17505835 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
17505900 GCATACAGGGGGGATTGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
66 GCACACAGGGGGGATCGAGCCGATCCCTGACTTGTGCATTATGCCTCTTCGGTCGGCTCAGCGCC
** * *
17505965 CGCATGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACACTCGTTTCATGGGTTGACTTAG
*
17505993 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17506020 CATATGGAGT
Statistics
Matches: 377, Mismatches: 111, Indels: 30
0.73 0.21 0.06
Matches are distributed among these distances:
157 6 0.02
158 150 0.40
159 211 0.56
160 10 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACACAGGGGGGATCGAGCCGATCCCTGACTTGTGCATTATGCCTCTTCGGTCGGCTCAGCGCC
CGCACACTCGTTTCATGGGTTGACTTAG
Found at i:17506022 original size:26 final size:26
Alignment explanation
Indices: 17505993--17506045 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17505983 GTTGGCTTAG
17505993 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
17506019 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17506045 G
1 G
17506046 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17506750 original size:26 final size:26
Alignment explanation
Indices: 17506714--17506769 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17506704 TGGGTTGACT
17506714 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
17506740 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
17506766 TAAG
1 TAAG
17506770 ATCAGATCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:17507055 original size:159 final size:158
Alignment explanation
Indices: 17506743--17507246 Score: 426
Period size: 159 Copynumber: 3.2 Consensus size: 158
17506733 CCCAGTCTAA
** * * * * * ** *
17506743 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAAATCGGACCGAGAGTTGTGGCAACAGGATCGAT
** * * ** ** * * * * ** *
17506807 AGCACGCA-AGGGGGACTGGGCCGATCCCCAGCTTGGGCATTCTACCTCTCCGATCGATTGAGCG
65 AGCACATAGAGGGCGACCGGATCGATCCCCAGCTTACGCATTATGCCCCTCCGACCGGCTAAGCG
* *
17506871 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 -CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
17506901 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGATCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAAATCGGACCGAGAGTTGTGGCAACAGGATCGATA
* * * *
17506966 GCACGTAGAGGGCGATC-GAGTCGATCCCC-GACTTACGCATTATGCCTCTCCGACCGGCTTAGC
66 GCACATAGAGGGCGACCGGA-TCGATCCCCAG-CTTACGCATTATGCCCCTCCGACCGGCTAAGC
*
17507029 ATCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 -GCCGCACGCTCGTTTCATGGGTTGGCTTAG
** *
17507060 GCATACGGAGTTCATTCC-TAGTCTAAGATCAAATCGGACCGAGAGTTGTGGCAATAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCAAATCGGACCGAGAGTTGTGGCAACAGGATCGAT
* * * * ** * *
17507124 AGCATATAGGGGGGGACCGGATCGGTCCCCAGCTTGTGCATTCTGCCCCTCCGGCCGGCTAAGCG
65 AGCACATAGAGGGCGACCGGATCGATCCCCAGCTTACGCATTATGCCCCTCCGACCGGCTAAGCG
*
17507189 CTCGCAGGCTCG-TTCTATGGGTTGGCTTAG
130 C-CGCACGCTCGTTTC-ATGGGTTGGCTTAG
*
17507219 GCACACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
17507247 ATACAGAGTT
Statistics
Matches: 279, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 61 0.22
159 211 0.76
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAAATCGGACCGAGAGTTGTGGCAACAGGATCGATA
GCACATAGAGGGCGACCGGATCGATCCCCAGCTTACGCATTATGCCCCTCCGACCGGCTAAGCGC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17508585 original size:26 final size:26
Alignment explanation
Indices: 17508556--17508608 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17508546 GTTGGCTTAG
**
17508556 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17508582 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17508608 G
1 G
17508609 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17509320 original size:26 final size:26
Alignment explanation
Indices: 17509280--17509332 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17509270 GTTGACTTAG
17509280 GCATACAGAGGTCA-TCCCTAGTCTAA
1 GCATACAGAGGTCATTCCC-AGTCTAA
*
17509306 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
17509332 G
1 G
17509333 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:17510555 original size:26 final size:26
Alignment explanation
Indices: 17510519--17510569 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17510509 TTGACTTAGG
17510519 CATACGAAGTTCATCCCCAGTCTAAA
1 CATACGAAGTTCATCCCCAGTCTAAA
* * *
17510545 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGAAGTTCATCCCCAGTCTAA
17510570 GATCGGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAA
Found at i:17512050 original size:26 final size:26
Alignment explanation
Indices: 17511998--17512050 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17511988 GTTGACTTAG
* *
17511998 GCATACGGAGTTCATCCCCTGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17512024 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17512050 G
1 G
17512051 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17512756 original size:26 final size:26
Alignment explanation
Indices: 17512720--17512772 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17512710 GTTGGCTTAG
*
17512720 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
17512746 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17512772 G
1 G
17512773 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17513484 original size:26 final size:26
Alignment explanation
Indices: 17513454--17513506 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17513444 GTTGACTTAG
*
17513454 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCCT-GTCTAA
17513480 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
17513506 G
1 G
17513507 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTGTCTAA
Found at i:17514351 original size:26 final size:26
Alignment explanation
Indices: 17514322--17514374 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17514312 GTTAACTTAG
17514322 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
17514348 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17514374 G
1 G
17514375 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17514394 original size:525 final size:514
Alignment explanation
Indices: 17513629--17515405 Score: 1599
Period size: 525 Copynumber: 3.5 Consensus size: 514
17513619 TCATTTCGTA
* * * *
17513629 GGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAAATCAGGCCAGACCGA-GGTTGCGACAG
1 GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAG
* * * * * * *
17513693 CAGGATCGACAGCACGC-AGGGGGGATCGGGTCGGATCTCGGCTTACGCATTCTGCCTCTCCG-G
66 CAGGATCGACAGCACGCTGGGGGGGACCGGGT-TGATCCCGGCTTGCGCATTCTGCCTCTCTGAC
* * * *
17513756 GCAGTTGAACGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCGTACAGAGTTCATTCCATATCT
130 TCAGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCT
* * * *
17513821 AAGCATATGGAGTTCATTCCCAGTCTAGGAT-AAGACCAAATCGAGGGTTGCGATAGCAGGACCA
195 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCAAACCGAGGGTTGCGATAGCAGGACC-
17513885 GCAACAGGATCAACAGCATACAGGGGGGACAGGG-CTGATTCTCAGCTTGCGCATTCTGCCTCTC
259 GCAACAGGATC-ACAGCAT-CAGGGGGGACAGGGTC-GA-TCTC-GCTTGCGCATTCTGCCTCTC
* *
17513949 TGGCCTGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGGATACGGAGTTCATTCCATG
319 TGGCCTGCT-AGC-CTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
*
17514014 TCTAAACCTTAGCCAATTCGAGGGTTGTGGCAGCAGGACCGGTAGTGGGATCGACAGCACGCAGA
382 TCTAAACCCTAGCCAA-TCGAGGGTTGTGGCAGCAGGA-C-G-AGTGGGATCGACAGCACGCAGA
* * * * *
17514079 GGGGGACAGGGCTGATCCCCTGCTTACGCATTATGCCTCTCCGGTTGACTCAGTGCCTGAACGCT
443 GGGGGAC-GAGCTGATCCTCAGCTTGCGCATTATGCCTCTCCGGTCGACTCAGTGCCTGAACGCT
17514144 TGTTTCAT
507 TGTTTCAT
* * ** * **
17514152 GGTTAACTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGATCAAAATGAGGGTTGTGGTAG
1 GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAG
* * *
17514217 TAGGATCGACAGCACGCTGGGGGGGACCAGGTTGATCCCTGGCTTGTGCATTCTGCCTCTCTGAC
66 CAGGATCGACAGCACGCTGGGGGGGACCGGGTTGATCCC-GGCTTGCGCATTCTGCCTCTCTGAC
* * ** *
17514282 T-GGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCA-TCCCTAGTC
130 TCAGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATA-TC
** * * * *
17514345 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGTGGTAGTAGGATC
194 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCAAACCGAGGGTTGCGATAGCAGGACC
17514409 G--ACA-G--CAC-G--T-AGGGGGGATC-GGGTCGA--TC-C-T-CG-A--------CT-T-G-
259 GCAACAGGATCACAGCATCAGGGGGGA-CAGGGTCGATCTCGCTTGCGCATTCTGCCTCTCTGGC
* *
17514447 -TGC-A----CG--C-C-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
323 CTGCTAGCCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAA
* * * * *
17514502 CCCTAGCCGGACCGAGGGTTGT-G--GTA--AC----GGGA-CTGACAGCACGTAGAGGAGGATC
388 CCCTAGCC-AATCGAGGGTTGTGGCAGCAGGACGAGTGGGATC-GACAGCACGCAGAGGGGGA-C
* * * * * *** * * *
17514557 GAGCCGATCCTCGGCTTGCGCACTT-TACCTCTCCGGCCGGCTCAACACCCGCACGCTCGTTTCA
450 GAGCTGATCCTCAGCTTGCGCA-TTATGCCTCTCCGGTCGACTCAGTGCCTGAACGCTTGTTTCA
17514621 T
514 T
* * * ** ** ** * *
17514622 GGGTTGACTTAGGCATACTGAGTTTATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGTGATA
1 -GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACA
* * * ** *
17514687 GCAGGATCGATAGTACGCAT-GGGGGGATCGGGCCGTATCCCGGCTTGCGCATTCTGCCTCTCCG
65 GCAGGATCGACAGCACGC-TGGGGGGGACCGGGTTG-ATCCCGGCTTGCGCATTCTGCCTCTCTG
* * * *
17514751 -GTCAGTTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATAT
128 ACTCAGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATAT
* * * * * *
17514815 CTAAGCATATGGAGTTCATTCCCAGTCTAGGATCGA-ATCGAACCAAGGGTTGCGGTAGCAGGAC
193 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCAAACCGAGGGTTGCGATAGCAGGAC
*
17514879 CGACAACAGGATCGACAGCATGCAGGGCGGACAGGGTCGATCCTCGGCTTGCGCATTCTGCCTCT
258 CG-CAACAGGATC-ACAGCAT-CAGGGGGGACAGGGTCGAT-CTC-GCTTGCGCATTCTGCCTCT
* * * *
17514944 CTGGCCTGTTAAGCACTCGCACGCTCGTTTCATGGGTTAGTTTAGGCATATGGAGTTCATTCCAT
318 CTGGCCTGCT-AGC-CTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * *
17515009 GTCTAAACCCCAGTCGAATCGAGGGTTGTGGCAGCAGGATCGACAGTGGGATCCATAGCACGCAG
381 GTCTAAACCCTAG-CCAATCGAGGGTTGTGGCAGCAGGA-CG--AGTGGGATCGACAGCACGCAG
* * *
17515074 AGGGGGACCGAGCTGATCCTCAGCTTGGGCATTATGCCTCTTCGGTCGACTCAGTGCCTGAATGC
442 AGGGGGA-CGAGCTGATCCTCAGCTTGCGCATTATGCCTCTCCGGTCGACTCAGTGCCTGAACGC
*
17515139 TTGTTTCGT
506 TTGTTTCAT
* * * * *
17515148 GGTTGACTTAGGCATAC-GATGTTTATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCA
1 GGTTAACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACA
* * * * * *
17515212 GCAAGATCGACAACACGCTGGGGGGGACCGGGTTGATCCCCAGCTTGTGCATTTTACCTCTCTGA
65 GCAGGATCGACAGCACGCTGGGGGGGACCGGGTTGAT-CCCGGCTTGCGCATTCTGCCTCTCTGA
* * * * * * * *
17515277 -TCGGCTGAGCACTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTC
129 CTCAGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATATC
* * * * * *
17515341 TAAGCATACGGAGTTTATTCCCAGTCTAAGATC-AGACCAGATCGAGGGTTACGACAGTAGGACC
194 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCAAACCGAGGGTTGCGATAGCAGGACC
17515405 G
259 G
17515406 GTAGTAGGAC
Statistics
Matches: 998, Mismatches: 175, Indels: 160
0.75 0.13 0.12
Matches are distributed among these distances:
469 1 0.00
470 69 0.07
471 208 0.21
472 11 0.01
474 3 0.00
475 1 0.00
476 1 0.00
477 2 0.00
478 2 0.00
479 3 0.00
481 2 0.00
482 61 0.06
483 16 0.02
484 1 0.00
486 4 0.00
488 1 0.00
489 1 0.00
490 2 0.00
491 2 0.00
493 3 0.00
495 1 0.00
496 1 0.00
497 2 0.00
499 2 0.00
500 1 0.00
501 1 0.00
503 2 0.00
505 2 0.00
506 2 0.00
507 1 0.00
508 1 0.00
510 4 0.00
512 1 0.00
513 14 0.01
514 61 0.06
515 3 0.00
517 3 0.00
518 2 0.00
519 2 0.00
520 1 0.00
521 1 0.00
522 3 0.00
523 45 0.05
524 41 0.04
525 338 0.34
526 68 0.07
527 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (514 bp):
GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAG
CAGGATCGACAGCACGCTGGGGGGGACCGGGTTGATCCCGGCTTGCGCATTCTGCCTCTCTGACT
CAGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCAAACCGAGGGTTGCGATAGCAGGACCGC
AACAGGATCACAGCATCAGGGGGGACAGGGTCGATCTCGCTTGCGCATTCTGCCTCTCTGGCCTG
CTAGCCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCC
TAGCCAATCGAGGGTTGTGGCAGCAGGACGAGTGGGATCGACAGCACGCAGAGGGGGACGAGCTG
ATCCTCAGCTTGCGCATTATGCCTCTCCGGTCGACTCAGTGCCTGAACGCTTGTTTCAT
Found at i:17514818 original size:159 final size:159
Alignment explanation
Indices: 17514448--17514821 Score: 382
Period size: 159 Copynumber: 2.4 Consensus size: 159
17514438 CTCGACTTGT
* * ** *
17514448 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
1 GCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACTAGCCGGA
* * *
17514513 CCGAGGGTTGTGGTAACGGGACTGACAGCACGTAGAGGAGGATCGAGCCGATCCTCGGCTTGCGC
66 CCGAGGGTTGTGATAACAGGACTGACAGCACGCAGAGGAGGATCGAGCCGATCCTCGGCTTGCGC
*
17514578 ACTTTACCTCTCCGGCCGGCTCAACACCC
131 ACTTTACCTCTCCGGCCAGCTCAACACCC
* * * * * *
17514607 GCACGCTCGTTTCATGGGTTGACTTAGGCATACTGAGTTTATTCCCA-GTCTAAG-ATTGGACCG
1 GCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACTAG-CCG
** * * * * *
17514670 GATTGAGGGTTGTGATAGCAGGA-TCGATAGTACGCATG-GGGGGATCGGGCCGTATCC-CGGCT
64 GACCGAGGGTTGTGATAACAGGACT-GACAGCACGCA-GAGGAGGATCGAGCCG-ATCCTCGGCT
* * * * * *
17514732 TGCGCA-TTCTGCCTCTCCGGTCAGTTGAGCGCCC
126 TGCGCACTT-TACCTCTCCGGCCAGCTCAACACCC
* *
17514766 GTACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCTAAGCA
1 GCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
17514822 TATGGAGTTC
Statistics
Matches: 176, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
158 8 0.05
159 159 0.90
160 9 0.05
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
GCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACTAGCCGGA
CCGAGGGTTGTGATAACAGGACTGACAGCACGCAGAGGAGGATCGAGCCGATCCTCGGCTTGCGC
ACTTTACCTCTCCGGCCAGCTCAACACCC
Found at i:17515347 original size:26 final size:26
Alignment explanation
Indices: 17515318--17515370 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17515308 GTTGGCTTAG
17515318 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
17515344 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17515370 G
1 G
17515371 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17515555 original size:26 final size:26
Alignment explanation
Indices: 17515526--17515578 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17515516 GTTGACTTAG
**
17515526 GCATACGGTGTACATCCCCAGTCTAA
1 GCATACGAAGTACATCCCCAGTCTAA
* *
17515552 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTACATCCCCAGTCTAA
17515578 G
1 G
17515579 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTACATCCCCAGTCTAA
Found at i:17517087 original size:158 final size:157
Alignment explanation
Indices: 17516633--17517114 Score: 515
Period size: 159 Copynumber: 3.1 Consensus size: 157
17516623 GTTGATTTCT
* * ** *
17516633 AGTCTAAGATCGGACTGGACCGAGGGTTACGACAGTAGGATCGACAGCACG-CAGGGGGACCGGG
1 AGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCGACAGCACGTAAGGGGGACCGGG
* * * * * * *
17516697 CCGATCCTCGGCTTGTGCATTCTGCCTCTCCG-GTCGGCTGAGCGCCCGTACACCCGTTTCATGG
66 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
17516761 TTTGGCTTAGGTATAGGGAGTTCATTCC
130 GTTGGCTTAGGTATACGGAGTTCATTCC
** * * ** *
17516789 ATGTCTAAGCCCCAG-CCAGACCGGGGGTTGTGACAGCT-GGGCCGACAGCACGTAGAGGGGGAT
1 A-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAG-TAGGATCGACAGCACGTA-AGGGGGAC
* * * * * * *
17516852 CGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTGCAGGCTCGTTTCG
62 CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCG
*
17516917 TGGGTTGACTTAGGTATACGGAGTTCATTCCC
127 TGGGTTGGCTTAGGTATACGGAGTTCATT-CC
* *
17516949 AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCCCGTAAGGGGGACCGGG
1 AGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCGACAGCACGTAAGGGGGACCGGG
* * * * *
17517014 TC-AGTCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCATGCTTGTTTCGTGG
66 CCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
17517078 GTTGGCTTAGGCATACGGAGTTCATTTC
130 GTTGGCTTAGGTATACGGAGTTCATTCC
17517106 ATGTCTAAG
1 A-GTCTAAG
17517115 CATACGGAGT
Statistics
Matches: 263, Mismatches: 52, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 38 0.14
158 100 0.38
159 121 0.46
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (157 bp):
AGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCGACAGCACGTAAGGGGGACCGGG
CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGTATACGGAGTTCATTCC
Found at i:17517137 original size:26 final size:26
Alignment explanation
Indices: 17517088--17517138 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17517078 GTTGGCTTAG
**
17517088 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
17517114 GCATACGGAGTTCGATCCCA-GTCTA
1 GCATACGGAGTTC-ATCCCATGTCTA
17517139 GATTGGAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:17517985 original size:26 final size:26
Alignment explanation
Indices: 17517966--17518015 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17517956 TTCATTGTTG
*
17517966 GCTTAGGCATACGGAGTTCATTCCAT
1 GCTTAAGCATACGGAGTTCATTCCAT
*
17517992 GTTTAAGCATACGGAGTTCATTCC
1 GCTTAAGCATACGGAGTTCATTCC
17518016 CAGTCTAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (26 bp):
GCTTAAGCATACGGAGTTCATTCCAT
Found at i:17518024 original size:26 final size:26
Alignment explanation
Indices: 17517972--17518024 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17517962 GTTGGCTTAG
*
17517972 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17517998 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
17518024 G
1 G
17518025 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17519249 original size:26 final size:26
Alignment explanation
Indices: 17519171--17519238 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
17519161 GTTGTCTTAG
17519171 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17519197 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
17519223 GCATACGGAATTCATT
1 GCATACGGAGTTCATT
17519239 TGCAGTCTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17519432 original size:26 final size:26
Alignment explanation
Indices: 17519393--17519445 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17519383 GTTGACTTAG
17519393 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* * *
17519419 GCATACGGATTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
17519445 G
1 G
17519446 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:17520853 original size:159 final size:159
Alignment explanation
Indices: 17520530--17520984 Score: 474
Period size: 159 Copynumber: 2.9 Consensus size: 159
17520520 CGAGAGTTAC
* * * * *
17520530 GGTAGCAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCCAGCTCACACATTCTACCTCTC
1 GGTAGCAGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTACACATTCTGCCTCTC
* * * * *
17520595 CGACTGGCTGAGCGCCTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAT
66 CGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAT
* **
17520659 GTCTAAGCCCCAGTCAGACTGAGGATTGT
131 GTCTAAGCACCAGTCAGACCAAGGATTGT
* * * *
17520688 GGTAGCAGGATCGATAGCATGCAGAGGGGGATTGGGTCGATCCCCGGCTTACGCATTATGCCTCT
1 GGTAGCAGGATCGACAGCATGCAG-GGGGGATCGGGTCGATCCCCGGCTTACACATTCTGCCTCT
* * * *
17520753 CCGACCGGCTCAGCGCCCGCAGGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCA
65 CCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* *
17520818 -GTCTAAG-ATCAGAT-AGGACCAAGGGTTG-
130 TGTCTAAGCACCAG-TCA-GACCAAGGATTGT
* * * * * *
17520846 GGATAGCAAGATCGACAGCATGTAGGGGGGACCGGGCCGGTCCCCGAC-TAGCACATTCTGCCTC
1 GG-TAGCAGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTA-CACATTCTGCCTC
* ** * * * **
17520910 TTCGGTCGGTTGAGCGTCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CC
64 TCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCC
*
17520974 ATGCCTAAGCA
129 ATGTCTAAGCA
17520985 TACGGAGTTC
Statistics
Matches: 243, Mismatches: 46, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
157 5 0.02
158 113 0.47
159 122 0.50
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GGTAGCAGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTACACATTCTGCCTCTC
CGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAT
GTCTAAGCACCAGTCAGACCAAGGATTGT
Found at i:17523270 original size:26 final size:26
Alignment explanation
Indices: 17523234--17523286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17523224 GTTGACTTAG
17523234 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
**
17523260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
17523286 G
1 G
17523287 ATGGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:17524328 original size:26 final size:26
Alignment explanation
Indices: 17524299--17524351 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17524289 GTTGACTTAG
17524299 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17524325 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17524351 G
1 G
17524352 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17525163 original size:26 final size:26
Alignment explanation
Indices: 17525134--17525186 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17525124 GTTGACTTAG
*
17525134 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
17525160 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17525186 G
1 G
17525187 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17525633 original size:158 final size:159
Alignment explanation
Indices: 17525299--17525660 Score: 431
Period size: 158 Copynumber: 2.3 Consensus size: 159
17525289 CACATGCCCG
* *
17525299 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAACCGAACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCGAACCGAGGGTT
** * *
17525364 GTGGTAGCAGGACCGACAGCACGTAAAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCT
66 GCAGCAGCAGGACCGACAGCACGTAAAGGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCT
* * * *
17525429 CTCCGGCCGGTTCAGTGCCCGAACGCTCA
131 CTCCGGCCAGCTCAGCGCCCGAACCCTCA
* * * * * *
17525458 TTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAAACCGAACCGAGGGT
* * * * * * * * * *
17525522 TGCAGCAGTAGGATCGATAGCATGT-AGGGGGGGCCGGGTCGGTCCTCGGCTTACGCATTCTGCC
65 TGCAGCAGCAGGACCGACAGCACGTAAAGGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCC
* * *
17525586 TCTCCGGTCAGCTGAGCGCCCGTACCCTCA
130 TCTCCGGCCAGCTCAGCGCCCGAACCCTCA
*
17525616 TTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17525661 CATACGGAGT
Statistics
Matches: 169, Mismatches: 32, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
157 3 0.02
158 93 0.55
159 70 0.41
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCGAACCGAGGGTT
GCAGCAGCAGGACCGACAGCACGTAAAGGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCT
CTCCGGCCAGCTCAGCGCCCGAACCCTCA
Found at i:17525670 original size:26 final size:26
Alignment explanation
Indices: 17525634--17525686 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17525624 GTTGGCTTAG
17525634 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17525660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17525686 G
1 G
17525687 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17526055 original size:158 final size:159
Alignment explanation
Indices: 17525754--17526172 Score: 495
Period size: 158 Copynumber: 2.6 Consensus size: 159
17525744 AGGGGGATCA
* * * * * *
17525754 GTCGATCCCCGACTTACGCATTCTGCCTCTCTGACTGGGTGAGCGCCCGCACGCTCATTTCGTGG
1 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* **** *
17525819 GTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGTTTGAACCGGACCGAGGGTTGCAGCAG
66 GTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACAGGACCGAGGGTTGCAGCAG
* *
17525883 CAGGATTGGTAGCACACAG-GGGGGACCGG
130 CAGGACTGGCAGCACACAGAGGGGGACCGG
* ** * ** *
17525912 GTCGATCCCCGGCTTGTGCATTCCACCTCTCCGACCGGTTGAGCGCTTGCACGCCCGTTTCGTGG
1 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * * **
17525977 GTGGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGATCGAGGGTTGTGGCAGC
66 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACAGGACCGAGGGTTGCAGCAG-
*
17526042 CA-GACTGGCAGCACACAGAGGGGGATCGG
130 CAGGACTGGCAGCACACAGAGGGGGACCGG
* * * * *
17526071 GTCAATCCCCGGCTTGCGCATTCTGCCTCTCCG-GCAGCTGAGCGCCCACACGCTCGTTTTGTGG
1 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
17526135 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17526173 ATACAAAGTT
Statistics
Matches: 217, Mismatches: 41, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
157 3 0.01
158 174 0.80
159 40 0.18
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (159 bp):
GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACAGGACCGAGGGTTGCAGCAGC
AGGACTGGCAGCACACAGAGGGGGACCGG
Found at i:17526903 original size:26 final size:26
Alignment explanation
Indices: 17526865--17526917 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17526855 GTTGACTTAC
17526865 GCATACGATGTTCATCCCCAGTCTAA
1 GCATACGATGTTCATCCCCAGTCTAA
*
17526891 GCATACGGA-GTTCATTCCCAGTCTAA
1 GCATAC-GATGTTCATCCCCAGTCTAA
17526917 G
1 G
17526918 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGATGTTCATCCCCAGTCTAA
Found at i:17527249 original size:160 final size:158
Alignment explanation
Indices: 17526891--17527271 Score: 428
Period size: 160 Copynumber: 2.4 Consensus size: 158
17526881 CCCAGTCTAA
* * * * *
17526891 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGTTGCGGCAGCAGGATCGACA
* * * * * * *
17526956 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCTCATTTTGCCTTTCCGACCGGCTGAGCACC
66 ACACGCAGGAGGGACCGGGCCGATCCCCGACTTGCTCATTATGCCTCTCCGACCAGCTCAACACC
*
17527021 CGCGTGCCCATTTCATGGGTTAGCTTAG
131 CGCGCGCCCATTTCATGGGTTAGCTTAG
* * * * * *
17527049 GCATAGGGAGTTCATT-CCATGTCTATGCCTCAG-CCGGACCGATGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGACGGTTGCGGCAGCAGGATCGA
**
17527112 CAACACGCAGAGAGGGATTGGGCCGATCCCCGACTTG-TGCATTATGCCTCTCCGACCAGCTCAA
64 CAACACGCAG-GAGGGACCGGGCCGATCCCCGACTTGCT-CATTATGCCTCTCCGACCAGCTCAA
* * * * **
17527176 CGCCTTGCGCGCTCGTTTTGTGGGTT-GACTTAG
127 CACC-CGCGCGCCCATTTCATGGGTTAG-CTTAG
*
17527209 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGTTGCGGCAACAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGTTGCGGCAGCAGGATCGA
17527272 TAGCATGCTG
Statistics
Matches: 182, Mismatches: 33, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 55 0.30
159 54 0.30
160 67 0.37
161 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGTTGCGGCAGCAGGATCGACA
ACACGCAGGAGGGACCGGGCCGATCCCCGACTTGCTCATTATGCCTCTCCGACCAGCTCAACACC
CGCGCGCCCATTTCATGGGTTAGCTTAG
Found at i:17527974 original size:26 final size:26
Alignment explanation
Indices: 17527934--17527989 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
17527924 TGGGTTGACT
17527934 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
*
17527960 TAAGCATAC-AGAGTTCATTCCCAGTC
1 TAAGCATACGA-AGTTCATCCCCAGTC
17527986 TAAG
1 TAAG
17527990 ATCAGATTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:17528667 original size:171 final size:171
Alignment explanation
Indices: 17528352--17528667 Score: 389
Period size: 171 Copynumber: 1.8 Consensus size: 171
17528342 ACAGCATGCA
* * * **
17528352 GGGGGGATCGGGCCGGTCCTCAGCCTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGTATAC
1 GGGGGGATCGGGCCGATCCTCAGCCTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATAC
* * * * ** *
17528417 TCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTATGATTGAACCAGATCGAGG
66 TCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGG
* * *
17528482 CTTGTGATAGCAGGACCAGCAATAGGATCGGCAGCACACAG
131 CTAGCGACAGCAGGACCAGCAATAGGATCGGCAGCACACAG
* * * * *
17528523 GGGGGGATTGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATGC
1 GGGGGGATCGGGCCGATCCTCAGCCTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATAC
* * * **
17528588 TCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGG
66 TCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGG
* *
17528653 GTAGCGGCAGCAGGA
131 CTAGCGACAGCAGGA
17528668 TCGACAACAT
Statistics
Matches: 118, Mismatches: 27, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
171 118 1.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (171 bp):
GGGGGGATCGGGCCGATCCTCAGCCTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATAC
TCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGG
CTAGCGACAGCAGGACCAGCAATAGGATCGGCAGCACACAG
Found at i:17528812 original size:158 final size:157
Alignment explanation
Indices: 17527963--17528950 Score: 494
Period size: 158 Copynumber: 6.2 Consensus size: 157
17527953 CCCAGTCTAA
* ** * * *
17527963 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATTC-GACCGAGGGTTGCGGCACCAGGAT--C
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-AACCGGACCAAGGGTAGCGGCAGCAGGATCGC
* * *
17528024 AACA-GCACGTAAGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGA
64 AACATGCA-G-AA-GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTG-CTCTCCGACCGGCTGA
* * *
17528088 GCACCCACACG-TCTGTTTCATGGGTTGGCTTAG
125 GCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * ** * * * * * *
17528121 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAACGGGA-CAGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCAAGGGTAGCGGCAGCAGGATC-G-C
* ** ** * * * * ** * *
17528185 AGCATGCAGAAGGGGACC-GTGTTGATCCTTGGCTTTCGCATTATTCCTCCCCGGTCGACTCAGC
64 AACATGCAGAAGGGGACCAG-GCCGATCCCCGGCTTGCGCATT-CTGCTCTCCGACCGGCTGAGC
* * * *
17528249 GCCCGAACGCTCATTTTGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
17528280 GCATACGGTGTTCATTCC-TAGTCTAAGATCAGACCGG-CTTGAGGGTTGCGACGGTAGGATCAA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCGGAC-CAAGGGTAGCGGCAGCAGGATC-G
* * * * * * * * ** *
17528343 CAGCATGCAG-GGGGGATCGGGCCGGTCCTCAGCCTGCGCATTCTGCCTCTCCGGTCGGTTGAGC
63 CAACATGCAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTG-CTCTCCGACCGGCTGAGC
* ** * *
17528407 GCCCGTATACTCATTTCATGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
17528438 GCATACAGAGTTCATTCC-TAGTCTATGATTGAACCAGATCGAGGCTTGTGATAGCAGGACCAGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCGGA-CCAAG---G-G-TAGC-GG--CAGC
* ** ** *** * * *
17528502 AATAGGATCGGCAGCACACAGGGGGGGATTGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCG
56 ---AGGATC-GCAACATGCAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTG-CTCTCCG
** * * * *
17528567 GTCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAA
116 ACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17528609 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACTGGACCGAGGGTAGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGGACCAAGGGTAGCGGCAGCAGGATCG-C
* * * *
17528673 AACATGTAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTTTGTCTCTCCGACCGGCTGAGCA
64 AACATGCAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTG-CTCTCCGACCGGCTGAGCG
* * **
17528737 CCCGCACGCCCATTTCGTGAATTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * ** *
17528767 GCATAGGGAGTTCATTCCATGTCTAAGCA-CCAGCCGGACCAAGGGTTGTGGCAGTGGGATCGGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAAACCGGACCAAGGGTAGCGGCAGCAGGATCGCA
* * * * * * *
17528831 GCATGCAGAAGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCTTCTCTGACCAGCTGAGCGC
65 ACATGCAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGC-TCTCCGACCGGCTGAGCGC
* *
17528896 ACGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17528925 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17528951 ACATACGGAG
Statistics
Matches: 634, Mismatches: 160, Indels: 72
0.73 0.18 0.08
Matches are distributed among these distances:
157 18 0.03
158 341 0.54
159 122 0.19
160 8 0.01
161 5 0.01
162 8 0.01
163 1 0.00
164 5 0.01
165 5 0.01
166 1 0.00
167 3 0.00
170 16 0.03
171 99 0.16
172 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCAAGGGTAGCGGCAGCAGGATCGCAA
CATGCAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17528956 original size:26 final size:26
Alignment explanation
Indices: 17528926--17528976 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17528916 TTGGCTTAGG
17528926 CATACAGAGTTCATTC-CATGTCTAAA
1 CATACAGAGTTCATTCACA-GTCTAAA
* *
17528952 CATACGGAGTTTATTCACAGTCTAA
1 CATACAGAGTTCATTCACAGTCTAA
17528977 GAGTTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCACAGTCTAAA
Found at i:17529869 original size:158 final size:157
Alignment explanation
Indices: 17529704--17530181 Score: 523
Period size: 158 Copynumber: 3.0 Consensus size: 157
17529694 CAGGATCAGT
* * *
17529704 AGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTCGACCTCTCTGGTCGGCTGAGCAC
1 AGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTACGCATTCG-CCTCTCTGGTCGGCTGAGCAC
* * * * *
17529769 CCACATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCG
65 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCG
* *
17529834 GATCGAGGGTTGTGGCAGCGGGACCGGC
130 GATCGAGGGTTGTGGCAGCAGGACCGAC
* * * * * * *
17529862 AGTACGCAGAGGGGGAC-GGGATCGATCCCCAGCTTCCACATTATGCCTCTCCGGTCGGCTCAGC
1 AGCACGCAG-GGGGGACTGGG-TCGATCCCCGGCTTACGCATT-CGCCTCTCTGGTCGGCTGAGC
* * * * *
17529926 ACACGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAG
63 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* *
17529989 ACCGGATCGAGGGTTGTGGCAGCAGGATCAAC
127 -CCGGATCGAGGGTTGTGGCAGCAGGACCGAC
* * ** * * **
17530021 AGCACGTAGGGGGGACTGGGTCGGTCCCCGATTTACGCATTCTGCCTCT-TCGATCGACTGAGTG
1 AGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTACGCATTC-GCCTCTCT-GGTCGGCTGAGCA
* * * *
17530085 CCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
64 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
*
17530150 GAATCGAGGGTTGTGGCAGCAGGACCGAC
129 GGATCGAGGGTTGTGGCAGCAGGACCGAC
17530179 AGC
1 AGC
17530182 GGGATTGGTA
Statistics
Matches: 260, Mismatches: 50, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 128 0.49
159 125 0.48
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
AGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTACGCATTCGCCTCTCTGGTCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGG
ATCGAGGGTTGTGGCAGCAGGACCGAC
Found at i:17530329 original size:26 final size:26
Alignment explanation
Indices: 17530299--17530351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17530289 GTTGACTTAG
17530299 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17530325 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17530351 G
1 G
17530352 ATCATACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17530508 original size:26 final size:26
Alignment explanation
Indices: 17530472--17530524 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17530462 GTTGGCTTAG
17530472 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCGA-GTCTAA
17530498 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
17530524 G
1 G
17530525 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:17530552 original size:173 final size:173
Alignment explanation
Indices: 17530279--17530865 Score: 585
Period size: 183 Copynumber: 3.3 Consensus size: 173
17530269 CCTACACATT
* *
17530279 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCG
** * * *
17530344 AGTCTAAGATCATACTGGACTAAGGGTTACGACAGC-ACACAG-AGGGGGAT-CGAGCCGATCCC
66 AGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCGACACAGCAGGGGG-TCCG-GCCGATCCC
* *
17530406 CGACTTGTGCATTCTACCTTTCCTGCCGGCTGAGTGCCCGCACGCT
129 CGACTTGTGCATTCT-CCTTTCCTGCCGGCTGAGCGCCCGCACGCC
* * *
17530452 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCC
*
17530516 GAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGTCCCGG
65 GAGTCTAAGATCGGACCGGACTGAGGGTTGCG--A-CA-G--CGACA-CA-GCAGGGGGT-CCGG
* * * * * *
17530581 TCGATCCCCGACTTGTGCAGTCTGCCTCT-CTGGCCAGCTGAGCGCCTGCATGCC
121 CCGATCCCCGACTTGTGCATTCT-CCTTTCCT-GCCGGCTGAGCGCCCGCACGCC
* * * *
17530635 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAATTCATTCTG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCG
*
17530700 AGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGTCCGGGT
66 AGTCTAAGATCGGACCGGACTGAGGGTTGC-G-A-CA-G--CGACA-CA-GCAGGGGGTCC-GG-
* ** * * *
17530765 CC-ATCCTCGACTTACGCATTCTGCTTCTCCGGCCGGCTGAGCACCCGCACGCC
121 CCGATCCCCGACTTGTGCATTCTCCTT-TCCTGCCGGCTGAGCGCCCGCACGCC
* * *
17530818 CGTTTCATGGGTTGGCTTATGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
17530866 CCCAGCCGAA
Statistics
Matches: 348, Mismatches: 45, Indels: 32
0.82 0.11 0.08
Matches are distributed among these distances:
172 3 0.01
173 81 0.23
175 1 0.00
176 2 0.01
177 1 0.00
179 1 0.00
180 3 0.01
181 2 0.01
182 11 0.03
183 235 0.68
184 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (173 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCG
AGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCGACACAGCAGGGGGTCCGGCCGATCCCCG
ACTTGTGCATTCTCCTTTCCTGCCGGCTGAGCGCCCGCACGCC
Found at i:17530707 original size:183 final size:183
Alignment explanation
Indices: 17530399--17530865 Score: 650
Period size: 183 Copynumber: 2.6 Consensus size: 183
17530389 GGGATCGAGC
* * * *
17530399 CGATCCCCGACTTGTGCATTCTACCTTTCCT-GCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGG
1 CGATCCCCGACTTGTGCATTCTGCCTCT-CTGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGG
*
17530463 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCGAGTCTAAGATC
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCGAGTCTAAGATC
17530528 GGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGTCCCGGT
130 GGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGTCCCGGT
* * * *
17530582 CGATCCCCGACTTGTGCAGTCTGCCTCTCTGGCCAGCTGAGCGCCTGCATGCCCGTTTCGTGGGT
1 CGATCCCCGACTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
* * * *
17530647 TGGCTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATATGGAATTCATTCTGAGTCTAAGATC
66 TGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAATTCATTCCGAGTCTAAGATC
* ** * *
17530711 GGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGTCCGGGT
130 GGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGTCCCGGT
* * ** * * * *
17530765 CCATCCTCGACTTACGCATTCTGCTTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCATGGGT
1 CGATCCCCGACTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
* *
17530830 TGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17530866 CCCAGCCGAA
Statistics
Matches: 247, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
182 5 0.02
183 239 0.97
184 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (183 bp):
CGATCCCCGACTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCGAGTCTAAGATCG
GACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGTCCCGGT
Found at i:17531266 original size:318 final size:317
Alignment explanation
Indices: 17530779--17531533 Score: 934
Period size: 318 Copynumber: 2.4 Consensus size: 317
17530769 CCTCGACTTA
* * * * *
17530779 CGCATTCTGCTTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTATGCATAG
1 CGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACG-CCGTTTCATGGGTTGGCTTAGGCATAG
* * *
17530844 GGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGTAGCGGGACTGGCATGACAC
65 GGAGTTCATTCCATGTCTAAGCCCCAGCCGAAACAAGGGTTGTGGCAGCGGGACAGGCATGACAC
** * * *
17530909 AGAGGGGGACCGGATTGATCCCCGGCTTGCGCATTATGCCTCT-TCGGCTGGCTCAGCACCCGAA
130 AGAGGGGGACCGGACCGATCCCCGGCTTGCGCATTATGCCTCTCT-GACCGACTCAGCACCCGAA
* *
17530973 CGCTCATTTCATGAGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGATCAGATCG
194 CGCTCATTTCATGAGTTGACTTAGGCATACAAACTTCATTCCCAGTCTAAGATCAGATCAGACCG
** * *
17531038 AGGGTTACGACAGCAGGATTGATAGCTCGTAG-G-GGCAGA-CTGGCTCGGTGCCC-GGCTTG
259 AGGGTTACGACAGCAGGATCAATAGCACGTAGAGAGG--GATCGGGCT-GGT-CCCTGGCTTG
* *
17531097 CGCATTCTGCCTCTCTGACCGGTTGAGTGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACG-CCGTTTCATGGGTTGGCTTAGGCATAG
*
17531162 GGAGTTCATTCCATGTCTAAGCCCCAGTC-AAACAGAGGGTTGTGGCAGCGGGACAGGCA-GCAC
65 GGAGTTCATTCCATGTCTAAGCCCCAGCCGAAACA-AGGGTTGTGGCAGCGGGACAGGCATG-AC
* * *
17531225 ATAGAGGGGGACC-GAGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGCCCG
128 ACAGAGGGGGACCGGA-CCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTCAGCACCCG
* * * ** * *
17531289 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGATCGGAC
192 AACGCTCATTTCATGAGTTGACTTAGGCATACAAACTTCATTCCCAGTCTAAGATCAGATCAGAC
** *
17531354 CGAGGGTTGTGGCAGCAGGATCAATAGCACGTAGAGAGGGATCGGGCTGGTCCCTGGCTTG
257 CGAGGGTTACGACAGCAGGATCAATAGCACGTAGAGAGGGATCGGGCTGGTCCCTGGCTTG
* * * * *
17531415 CACATTCTGCCTCTCCT-ACCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGTTTAGGCATA
1 CGCATTCTGCCTCT-CTGACCGGCTGAGCGCCCGCACGC-CGTTTCATGGGTTGGCTTAGGCATA
* * * * *
17531479 CGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGGGGCAGCAGGAC
64 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAACAAGGGTTGTGGCAGCGGGAC
17531534 CGGCCATGGG
Statistics
Matches: 377, Mismatches: 49, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
317 11 0.03
318 352 0.93
319 12 0.03
320 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (317 bp):
CGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCCGTTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCGAAACAAGGGTTGTGGCAGCGGGACAGGCATGACACA
GAGGGGGACCGGACCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTCAGCACCCGAACG
CTCATTTCATGAGTTGACTTAGGCATACAAACTTCATTCCCAGTCTAAGATCAGATCAGACCGAG
GGTTACGACAGCAGGATCAATAGCACGTAGAGAGGGATCGGGCTGGTCCCTGGCTTG
Found at i:17531512 original size:159 final size:158
Alignment explanation
Indices: 17530715--17531532 Score: 617
Period size: 159 Copynumber: 5.2 Consensus size: 158
17530705 AAGATCGGAC
* * * * * * * *
17530715 CGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGT--AGGGGGTCCGGG-TCCAT-CCTCGAC
1 CGGACCGAGGGTTGTGGCAGCAGGATCAATAGCACGTAGAGGGGGACCGGGCT-GATCCCT-GGC
* * ** * * *
17530776 TTACGCATTCTGCTTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTATGCA
64 TTGCGCATTCTGCCTCT-CTACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* *
17530841 TAGGGAGTTCATTCCATGTCTAAGCCCCAGC
128 TACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * ** *
17530872 CGAACCAAGGGTTGTGGTAGCGGGACTGGC-AT-GACAC--AGAGGGGGACCGGATTGATCCCCG
1 CGGACCGAGGGTTGTGGCAGCAGGA-T--CAATAG-CACGTAGAGGGGGACCGGGCTGATCCCTG
* ** * * * * * * *
17530933 GCTTGCGCATTATGCCTCTTCGGCTGGCTCAGCACCCGAACGCTCATTTCATGAGTTGACTTAGG
62 GCTTGCGCATTCTGCCTC-TCTACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
** **
17530998 CATACAAAGTTCATTCCCA-GTCTAAG-ATCAGAT
126 CATACGGAGTTCATT-CCATGTCTAAGCCCCAG-T
* * ** * ** * * * *
17531031 CAGATCGAGGGTTACGACAGCAGGATTGATAGCTCGTAG-GGGCAGA-CTGGCTCGGTGCCC-GG
1 CGGACCGAGGGTTGTGGCAGCAGGATCAATAGCACGTAGAGGG-GGACCGGGCT-GAT-CCCTGG
* *
17531093 CTTGCGCATTCTGCCTCTCTGACCGGTTGAGTGCCCGCACG-TCCGTTTCATGGGTTGGCTTAGG
63 CTTGCGCATTCTGCCTCTCT-ACCGGCTGAGCGCCCGCACGCT-CGTTTCATGGGTTGGCTTAGG
*
17531157 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
126 CATACGGAGTTCATTCCATGTCTAAGCCCCAGT
** * * ** * * *
17531190 CAAACAGAGGGTTGTGGCAGCGGGA-CAGGCAGCACATAGAGGGGGACCGAGCCGATCCCTGGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCA-ATAGCACGTAGAGGGGGACCGGGCTGATCCCTGGCT
* * * *
17531254 TGCGCATTATGCCTCTCTGACCGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
65 TGCGCATTCTGCCTCTCT-ACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* ** *
17531319 ACGGACTTCATTCCCA-GTCTAAG-ATCGGAT
129 ACGGAGTTCATT-CCATGTCTAAGCCCCAG-T
* * *
17531349 CGGACCGAGGGTTGTGGCAGCAGGATCAATAGCACGTAGAGAGGGATCGGGCTGGTCCCTGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCAATAGCACGTAGAGGGGGACCGGGCTGATCCCTGGCTT
* * * * *
17531414 GCACATTCTGCCTCTCCTACCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGTTTAGGCATA
66 GCGCATTCTGCCTCT-CTACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
*
17531479 CGGAGTTCATTCCATGTCTAAGCCCCAGC
130 CGGAGTTCATTCCATGTCTAAGCCCCAGT
* *
17531508 CGGACCAAGGGTTGGGGCAGCAGGA
1 CGGACCGAGGGTTGTGGCAGCAGGA
17531533 CCGGCCATGG
Statistics
Matches: 512, Mismatches: 116, Indels: 64
0.74 0.17 0.09
Matches are distributed among these distances:
157 24 0.05
158 27 0.05
159 431 0.84
160 30 0.06
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCAATAGCACGTAGAGGGGGACCGGGCTGATCCCTGGCTT
GCGCATTCTGCCTCTCTACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGT
Found at i:17531904 original size:26 final size:26
Alignment explanation
Indices: 17531874--17531926 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17531864 GTTGACATAG
*
17531874 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17531900 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17531926 G
1 G
17531927 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17532412 original size:158 final size:158
Alignment explanation
Indices: 17531987--17532414 Score: 463
Period size: 159 Copynumber: 2.7 Consensus size: 158
17531977 GCATGTAGGA
* * *
17531987 GGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCCGCTGAGTGCCC-CTACACCC
1 GGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGAT-CGCTGAGCGCCCGC-ACGCTC
* * * *
17532051 GTTTCGTGCGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGT
64 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGT
** * *
17532116 TATGGCAGTGGGGTCGACAGCACGTAGAGG
129 TATGGCAGCAGGATCCACAGCACGTAGAGG
* * * *
17532146 GGGATCGGGTCGATCCTC-AGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCACCCGCACGCTC
1 GGGATCGGGCCGATCCTCGA-CTTGCGCATTCTGCCTCTCCGATC-GCTGAGCGCCCGCACGCTC
* * * * ** * *
17532210 GTTTCATAGGTTGACTTAGGCATATGGAGTTCATTCCCA-ATCTAAG-ATCGGACCAGACCGAGG
64 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAAACCGAGG
* * * *
17532273 GTTGTGGGAGCAGGATCCACAGCACG-CGGGG
127 GTTATGGCAGCAGGATCCACAGCACGTAGAGG
* * *
17532304 GGGAAT-GGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTC
1 GGG-ATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCG-CTGAGCGCCCGCACGCTC
*
17532368 GTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
64 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17532415 ATACAGAGTT
Statistics
Matches: 221, Mismatches: 38, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.02
158 94 0.43
159 119 0.54
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
GGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGCTGAGCGCCCGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTA
TGGCAGCAGGATCCACAGCACGTAGAGG
Found at i:17532417 original size:26 final size:26
Alignment explanation
Indices: 17532387--17532439 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17532377 GTTGGCTTAG
17532387 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
17532413 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17532439 G
1 G
17532440 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17533140 original size:26 final size:26
Alignment explanation
Indices: 17533110--17533162 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17533100 GTTGACTTAG
*
17533110 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17533136 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17533162 G
1 G
17533163 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17533346 original size:184 final size:182
Alignment explanation
Indices: 17533037--17533687 Score: 587
Period size: 184 Copynumber: 3.5 Consensus size: 182
17533027 ACCACCCATT
* * * * * *
17533037 CGATCCCCGGCTTACGCATCCTGCCTCTCTGGTCGGCTAAGCACCCGTACGCTCGTTTCATGGGT
1 CGAT-CCCGGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
* **
17533102 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAGATGGAGTTCATTCCCAGTCTAAGATCG
*
17533167 GACCGAACCGAGGGTTACGACAGTAGGATTGGCAGCACGCAGGGGGGATCGAGC
130 GACCGGACCGAGGGTTACGACAGTAGGATT-GCAGCACGCAGGGGGGATCGAGC
* ** * *
17533221 CGATCCCTAGCTTATGCATTCTGCCTCTCCGATCGGCAGAACGCCCGTACGCTCGTTTCATGGGT
1 CGATCCC-GGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
* * *
17533286 TGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCAGATGGAGTTCATTCCCAGTCTAAGATC
65 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCAGATGGAGTTCATTCCCAGTCTAAGATC
* * * *
17533350 AGATCGGACCGAGGGTTGCGACAGCAGGACCAACAGCAGGATCTGC-GTCACGCAGGGGGGA-CC
129 GGACCGGACCGAGGGTT-----A-C--G----ACAGTAGGAT-TGCAG-CACGCAGGGGGGATCG
17533413 AGGC
180 A-GC
* * ** * * * **
17533417 CGATCCCCGGCTTATGCGTTCTACCTCTCCGGCCGATTGAGTGACCGTACACTTTTTTCATGGGT
1 CGAT-CCCGGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
*
17533482 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATG-TGGAGTTCATCCCCAGTCTAAGATC
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA-GATGGAGTTCATTCCCAGTCTAAGATC
* * * * * * ** * *
17533546 GAACCGGACTGAAGGTTGCGGCAATAGGATCAACAGCACGTAGGGGGGATCGGGC
129 GGACCGGACCGAGGGTTACGACAGTAGGAT-TGCAGCACGCAGGGGGGATCGAGC
* * * * *
17533601 CGATCCCGGCTTGCT-CATTTTGCCTCTCCGGCCGGCTGAGCACCTGCACGC-CGATTT-AGTGG
1 CGATCCCGGCTT-ATGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCG-TTTCA-TGG
* *
17533663 GTTGGCTTAGGCATAGGGAGTTCAT
63 GTTGACTTAGGCATACGGAGTTCAT
17533688 TCCATGTTTA
Statistics
Matches: 374, Mismatches: 68, Indels: 51
0.76 0.14 0.10
Matches are distributed among these distances:
182 1 0.00
183 68 0.18
184 148 0.40
185 2 0.01
188 1 0.00
189 1 0.00
190 2 0.01
192 1 0.00
195 3 0.01
196 139 0.37
197 8 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (182 bp):
CGATCCCGGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAGATGGAGTTCATTCCCAGTCTAAGATCGG
ACCGGACCGAGGGTTACGACAGTAGGATTGCAGCACGCAGGGGGGATCGAGC
Found at i:17533891 original size:158 final size:159
Alignment explanation
Indices: 17533559--17533947 Score: 412
Period size: 158 Copynumber: 2.5 Consensus size: 159
17533549 CCGGACTGAA
* * * *
17533559 GGTTGCGGCAATAGGATCAACAGCACGTAG-GGGGGATCGGGCCGATCCC-GGCTTGCTCATTTT
1 GGTTGCGGCAATAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCACATTAT
* * * * * *
17533622 GCCTCTCCGGCCGGCTGAGCACCTGCACGCCGATTTAGTGGGTTGGCTTAGGCATAGGGAGTTCA
66 GCCTCTCCGGCCGGCTAAGCACCAGCACACCGATTTAGTGGGTTGGCTTAGGCATACGAAATTCA
*
17533687 TTCCATGTTTAAGCCGCAACCGGACCAAG
131 TTCCATGTCTAAGCCGCAACCGGACCAAG
* * * * *
17533716 GGTTGTGGCAGTGGGATCGACAG-ACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCACATTCT
1 GGTTGCGGCAATAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCACATTAT
** * * *
17533780 GCCTCTCCGGTTGGCTAAGCAGCAGCACACTCG-TTTCGTGGGTTGGCTTAGGCATACGAAATTG
66 GCCTCTCCGGCCGGCTAAGCACCAGCACAC-CGATTTAGTGGGTTGGCTTAGGCATACGAAATTC
*** *
17533844 ATTCCATGTCTAAGTCC-CAGTTGGACCGAG
130 ATTCCATGTCTAAG-CCGCAACCGGACCAAG
* * * * ** * *
17533874 GGTTACGGCAACAGGATCGGCAGCACACAGAGGGGGA-CAGGGTTGATCCCTGACTTGCGCATTA
1 GGTTGCGGCAATAGGATCGACAGCACGCAGAGGGGGATC-GGGCCGATCCCTGGCTTGCACATTA
17533938 TGCCTCTCCG
65 TGCCTCTCCG
17533948 ACCGACTCAG
Statistics
Matches: 189, Mismatches: 37, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
156 5 0.03
157 37 0.20
158 102 0.54
159 45 0.24
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (159 bp):
GGTTGCGGCAATAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCACATTAT
GCCTCTCCGGCCGGCTAAGCACCAGCACACCGATTTAGTGGGTTGGCTTAGGCATACGAAATTCA
TTCCATGTCTAAGCCGCAACCGGACCAAG
Found at i:17534310 original size:158 final size:159
Alignment explanation
Indices: 17534083--17534519 Score: 411
Period size: 159 Copynumber: 2.8 Consensus size: 159
17534073 GATCGACAAG
* * * *
17534083 ACGCAG-GGGGGACCAAGCCGATCCCCGGCTTGCGTATTCTGCCTCTTCGGTCGGCTAAGCACCC
1 ACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTTTTCGCT-GGCTAAGCACCC
* * * * * *
17534147 ACACGC-CCTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAG-CTGG
65 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCACCAGACCGG
* *
17534210 A-CTGAGGGTTGTCG-TAGCAGGACCAATAGC
130 ATC-GAGGGTTGT-GATAACAGGACCAACAGC
* * * *
17534240 ACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTCGACTGGCTCAGCACCC
1 ACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTTTTCG-CTGGCTAAGCACCC
** * * * * * * ***
17534305 GCACGCTTGTTTAATGGGTTGACTTATGCATATGGAGTTCATTCC-TCATCTAAG-ATTGGACCG
65 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCAT-GTCTAAGCACCAGACCG
* * *
17534368 GATCGAGGGTTGTGATAACGGGATCGACAGC
129 GATCGAGGGTTGTGATAACAGGACCAACAGC
* * * * * * * *
17534399 ACGCAGGGGGGGATCAGGCCGATCCCCAGTTTGTGCATTCTGCCTTTCTGGCTGGCTGAGCATCC
1 ACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTTT-TCGCTGGCTAAGCACCC
* *
17534464 GCACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCA
65 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCA
17534520 TACAGAGTTC
Statistics
Matches: 222, Mismatches: 48, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 57 0.26
159 155 0.70
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
ACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTTTTCGCTGGCTAAGCACCCG
CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCACCAGACCGGA
TCGAGGGTTGTGATAACAGGACCAACAGC
Found at i:17534325 original size:342 final size:343
Alignment explanation
Indices: 17533709--17534358 Score: 763
Period size: 342 Copynumber: 1.9 Consensus size: 343
17533699 GCCGCAACCG
* ** * * *
17533709 GACCAAGGGTTGTGGCAGTGGGATCGACAGACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCA
1 GACCAAGGGTTGCGGCAGCAGGATCGACAGACGCAGAGGGGGACCAAGCCGATCCCCGGCTTGCA
* * * * *
17533774 CATTCTGCCTCTCCGGTTGGCTAAGCAGCAGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGA
66 CATTCTGCCTCTCCGGTCGGCTAAGCAGCACCACACCCCTTTCATGGGTTGGCTTAGGCATACGA
* * * * * **
17533839 AATTGATTCCATGTCTAAGTCCCAGTTGGACCGAGGGTTACGGCAACAGGATCGGCAGCACACAG
131 AATTCAGTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTACGGCAACAGGACCAACAGCACACAG
** * * **
17533904 AGGGGGACAGGGTTGATCCCTGACTTGCGCATTATGCCTCTCCGACCGACTCAGTGATTGAACGC
196 AGGGGGACAGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGTCACCGAACGC
**
17533969 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGCACGCGGAGTTCATTC
261 TCATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCTCA-TCTAAGCACGCGGAGTTCATTC
17534033 CCAGTCTAAGATCGGACCA
325 CCAGTCTAAGATCGGACCA
17534052 GACCAAGGGTTGCGGCAGCAGGATCGACAAGACGCAG-GGGGGACCAAGCCGATCCCCGGCTTGC
1 GACCAAGGGTTGCGGCAGCAGGATCGAC-AGACGCAGAGGGGGACCAAGCCGATCCCCGGCTTGC
** * *
17534116 GTATTCTGCCTCTTCGGTCGGCTAAGCA-C-CCACACGCCCTTTCATGGGTTGGCTTAGGCATAG
65 ACATTCTGCCTCTCCGGTCGGCTAAGCAGCACCACAC-CCCTTTCATGGGTTGGCTTAGGCATAC
* * * * * * * *
17534179 GGAGTTCAGTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTC-GTAGCAGGACCAATAGCACG
129 GAAATTCAGTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT-ACGGCAACAGGACCAACAGCACA
* * * * * * * *
17534243 TAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTCGACTGGCTCAG-CACCCGC
193 CAGAGGGGGACAGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGTCA-CCGA
** * *
17534307 ACGCTTGTTTAATGGGTTGACTTATGCATATGGAGTTCATTCCTCATCTAAG
257 ACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCTCATCTAAG
17534359 ATTGGACCGG
Statistics
Matches: 252, Mismatches: 50, Indels: 11
0.81 0.16 0.04
Matches are distributed among these distances:
341 6 0.02
342 162 0.64
343 76 0.30
344 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (343 bp):
GACCAAGGGTTGCGGCAGCAGGATCGACAGACGCAGAGGGGGACCAAGCCGATCCCCGGCTTGCA
CATTCTGCCTCTCCGGTCGGCTAAGCAGCACCACACCCCTTTCATGGGTTGGCTTAGGCATACGA
AATTCAGTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTACGGCAACAGGACCAACAGCACACAG
AGGGGGACAGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGTCACCGAACGC
TCATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCTCATCTAAGCACGCGGAGTTCATTCC
CAGTCTAAGATCGGACCA
Found at i:17534527 original size:26 final size:26
Alignment explanation
Indices: 17534491--17534543 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17534481 GTTAGCTTAG
*
17534491 GCATACGGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
*
17534517 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
17534543 G
1 G
17534544 ATTTTGAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:17535716 original size:159 final size:157
Alignment explanation
Indices: 17535375--17535742 Score: 432
Period size: 159 Copynumber: 2.3 Consensus size: 157
17535365 GAGCCCGCAT
* * *
17535375 GCCCGTTTCGTGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTCGGACCGA
1 GCCCGTTTCATGGGTT-GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
* * *
17535440 GGGTTGTGGCAACGGACCGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCGACTTGCGTATTAT
65 GGGTTGTGGCAACGGACCGACAGCACGCAGAGAGGGATCGAGCCGATCCCCGACTTACGTATTAT
*
17535505 GCCTCTCCTACCGGCTAAGCACCCCCAC
130 GCCTCTCCGACCGGCTAAGCACCCCCAC
* * * * * *
17535533 GCCCATTTCATGTGATGGCTTAGGCATAGGGAGTTCGTTCTATGTCTAAGCCCCAGCCGGATCGA
1 GCCCGTTTCATG-GGTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
* * * * *
17535598 GGGTTGTGGCAGCAGGATCGACAGCACGCAGAGAGGGACTC-AGTCGATCCTCGGCTTACGTATT
65 GGGTTGTGGCAAC-GGACCGACAGCACGCAGAGAGGGA-TCGAGCCGATCCCCGACTTACGTATT
* * * * * * **
17535662 CTGCCTTTCCGGCTGGCTGAGCGCCCGTAC
128 ATGCCTCTCCGACCGGCTAAGCACCCCCAC
* *
17535692 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCCCGTTTCATGGGTTG-CTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17535743 ATACGAAATT
Statistics
Matches: 173, Mismatches: 33, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
158 68 0.39
159 103 0.60
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GCCCGTTTCATGGGTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
GGTTGTGGCAACGGACCGACAGCACGCAGAGAGGGATCGAGCCGATCCCCGACTTACGTATTATG
CCTCTCCGACCGGCTAAGCACCCCCAC
Found at i:17535745 original size:26 final size:26
Alignment explanation
Indices: 17535715--17535767 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17535705 GTTGACTTAG
* *
17535715 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
17535741 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
17535767 G
1 G
17535768 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:17536470 original size:15 final size:15
Alignment explanation
Indices: 17536450--17536481 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
17536440 TACGGAGTTT
17536450 ATCCCCAGTCTAAGC
1 ATCCCCAGTCTAAGC
17536465 ATCCCCAGTCTAAGC
1 ATCCCCAGTCTAAGC
17536480 AT
1 AT
17536482 ACGAAGTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.38, G:0.12, T:0.22
Consensus pattern (15 bp):
ATCCCCAGTCTAAGC
Found at i:17536792 original size:158 final size:159
Alignment explanation
Indices: 17536630--17536980 Score: 515
Period size: 159 Copynumber: 2.2 Consensus size: 159
17536620 TCGTGGGTTC
17536630 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAAT-GGA
1 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAATGGGA
* * *
17536694 CCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACCTGCGCATTATGCCTCTCCGGCCGGCT
66 CCGGCAGCACGCAGAGAGGGACCAGGTCGATCCCCGACCTGCACATTATGCCTCTCCGGCCGGCT
17536759 GAGCACCCCCACGCCCATTTCATGGGATG
131 GAGCACCCCCACGCCCATTTCATGGGATG
* * * *
17536788 GCTTAGGCATAGGGAGTTCATTCTATTTCTAAGGCCCAGCCGGACCGAGGGTTGTGGCAGTGGGA
1 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAATGGGA
* * * * * * *
17536853 TCGGCAGCACGCAGAGAGGGACCAGGTCGATCCTCGGCTTGCATATTCTGCCTCTCCGGTCGGCT
66 CCGGCAGCACGCAGAGAGGGACCAGGTCGATCCCCGACCTGCACATTATGCCTCTCCGGCCGGCT
* * * * *
17536918 GAGCGCCCGCACGCTCGTTTCATGGGTTG
131 GAGCACCCCCACGCCCATTTCATGGGATG
*
17536947 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17536981 ATACGGAATT
Statistics
Matches: 169, Mismatches: 23, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
158 57 0.34
159 112 0.66
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (159 bp):
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAATGGGA
CCGGCAGCACGCAGAGAGGGACCAGGTCGATCCCCGACCTGCACATTATGCCTCTCCGGCCGGCT
GAGCACCCCCACGCCCATTTCATGGGATG
Found at i:17536931 original size:159 final size:157
Alignment explanation
Indices: 17536511--17536980 Score: 584
Period size: 158 Copynumber: 3.0 Consensus size: 157
17536501 AAAGATCAAA
* * * * *
17536511 CCGGATCGAGGGTTGCGGCAGCAGGATAGGCAGCACGCACG-GGGGA-CGGGGCTGATCCCCGGC
1 CCGGACCGAGGGTTGTGGCAG-TGGATCGGCAGCACGCA-GAGGGGACCGGGTC-GATCCCCGGC
* * * * * * * *
17536574 TTACGCATTCTGCCTCTTCGATCGACTGAGAGCCCGCATGCCCGTTTCGTGGGTTCGCTTAGGCA
63 TTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
17536639 TAGGGAGTTCATTCCATGTCTAAGCCCCAG
128 TAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
17536669 CCGGACCGAGGGTTGTGGCAATGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACCT
1 CCGGACCGAGGGTTGTGGCAGTGGATCGGCAGCACGCAGA-GGGGACCGGGTCGATCCCCGGCTT
* * * * * *
17536734 GCGCATTATGCCTCTCCGGCCGGCTGAGCACCCCCACGCCCATTTCATGGGATGGCTTAGGCATA
65 GCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
* * *
17536799 GGGAGTTCATTCTATTTCTAAGGCCCAG
130 GGGAGTTCATTCCATGTCTAAGCCCCAG
* *
17536827 CCGGACCGAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGAGAGGGACCAGGTCGATCCTCGGCT
1 CCGGACCGAGGGTTGTGGCAGT-GGATCGGCAGCACGCAGAG-GGGACCGGGTCGATCCCCGGCT
** *
17536892 TGCATATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
64 TGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
*
17536957 ACGGAGTTCATTCCATGTCTAAGC
129 AGGGAGTTCATTCCATGTCTAAGC
17536981 ATACGGAATT
Statistics
Matches: 262, Mismatches: 45, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
156 1 0.00
157 14 0.05
158 131 0.50
159 116 0.44
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (157 bp):
CCGGACCGAGGGTTGTGGCAGTGGATCGGCAGCACGCAGAGGGGACCGGGTCGATCCCCGGCTTG
CGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:17536983 original size:26 final size:26
Alignment explanation
Indices: 17536953--17537005 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17536943 GTTGGCTTAG
*
17536953 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
17536979 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
17537005 G
1 G
17537006 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:17537847 original size:26 final size:26
Alignment explanation
Indices: 17537811--17537863 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17537801 GTTGACTTAG
*
17537811 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17537837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17537863 G
1 G
17537864 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17538070 original size:25 final size:26
Alignment explanation
Indices: 17538019--17538070 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17538009 GTTGACTTAG
17538019 GCATACGAGGTTCATCCCCAGTCTAA
1 GCATACGAGGTTCATCCCCAGTCTAA
*
17538045 GCATACG-GAGTTCAT-TCCAGTCTAA
1 GCATACGAG-GTTCATCCCCAGTCTAA
17538070 G
1 G
17538071 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAGGTTCATCCCCAGTCTAA
Found at i:17538346 original size:159 final size:157
Alignment explanation
Indices: 17538168--17538705 Score: 474
Period size: 159 Copynumber: 3.4 Consensus size: 157
17538158 CGATGGACTG
* *
17538168 AGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCAAGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCAAGTCTAAGCCCC
* * * * * *
17538233 AATCGGACCTAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGTATCGAGCCGATCCCCGG
66 AACCGGACCAAGGGTTATGGCAGCAGGATCGACAGCACGTAGAGGGG-ATCGAGTCGATCCCTGG
17538298 CTTGCGCATTCTGCCTCTTCGGTCAGCTA
130 CTTGCGCATTCTGCCTCTTCGG-CAGCTA
* * *
17538327 AGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATA-CGAACTTCATTCCATGTCTAAGCCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGCG-AGTTCATTCCAAGTCTAAGCCC
* * * * * ** * * * *
17538391 TAGCCAGACCGAGGGTTATGGCAACAGGATCGGTAGTACGTGGAGAGAGATCGGGTCGATCCCTG
65 CAACCGGACCAAGGGTTATGGCAGCAGGATCGACAGCACGTAGAG-GGGATCGAGTCGATCCCTG
* * *
17538456 GCTTGCGCATTATGCCTC-TCTGGCTGACTC
129 GCTTGCGCATTCTGCCTCTTC-GGCAG-CTA
** * * * * *
17538486 AGCAG-TTGAACAG-TCGTTTCGTGGGTTGACTTAGGCAT-GCGGAATTCATTCCCAGTCTAAGA
1 AGC-GCCCGCAC-GCTCGTTTCGTGGGTTGGCTTAGGCATAGC-GAGTTCATTCCAAGTCTAAGC
* ** * * * * * * *
17538548 TCGGACCGGACCAAGGGTTACGGTAGCAGGATCAACAGCATGCAGGGGGGATCGAGTCGGTCCCT
63 CCCAACCGGACCAAGGGTTATGGCAGCAGGATCGACAGCACGTAGAGGGGATCGAGTCGATCCCT
* * * *
17538613 GGCTTGCACATTCTGCCTCTTCGACCGGTTA
128 GGCTTGCGCATTCTGCCTCTTCG-GCAGCTA
* ** * ** *
17538644 AGTGCCCATACGCTCGTTTCGTGAGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCAAGTCTAAGC
17538706 ATACGGAGTT
Statistics
Matches: 294, Mismatches: 72, Indels: 27
0.75 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 84 0.29
159 203 0.69
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCAAGTCTAAGCCCC
AACCGGACCAAGGGTTATGGCAGCAGGATCGACAGCACGTAGAGGGGATCGAGTCGATCCCTGGC
TTGCGCATTCTGCCTCTTCGGCAGCTA
Found at i:17538707 original size:26 final size:26
Alignment explanation
Indices: 17538678--17538730 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17538668 GTTGGCTTAG
*
17538678 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17538704 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17538730 G
1 G
17538731 ATCTGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17538918 original size:26 final size:26
Alignment explanation
Indices: 17538888--17538940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17538878 GTTGACTTAG
*
17538888 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17538914 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17538940 G
1 G
17538941 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17539735 original size:26 final size:26
Alignment explanation
Indices: 17539699--17539751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17539689 GTTGACTTAG
17539699 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17539725 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17539751 G
1 G
17539752 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17540082 original size:26 final size:26
Alignment explanation
Indices: 17540052--17540107 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
17540042 TGGGTTGACT
17540052 TAAGCATACAGAGTTCA-TCCTCAGTC
1 TAAGCATACAGAGTTCATTCC-CAGTC
* *
17540078 TAAGCTTACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17540104 TAAG
1 TAAG
17540108 ATCAGATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17540571 original size:158 final size:158
Alignment explanation
Indices: 17540084--17540580 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 158
17540074 AGTCTAAGCT
** * * *
17540084 TACGGAGTTCATTCCCA-GTCTAAGATCAGATTGGACCGAGGGTTGCGACAGCAGGATC-AGCAA
1 TACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGA-CAG
* * * * *
17540147 CACGTA-AGGGGGACCAGGCTGATCCTCGGCTTACGTATTCTACCTCTCCGGCCGGTTGAGCGCC
64 CACGCAGA-GGGGACCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCGGTCGGTTGAGCGCC
* * * *
17540211 TGCATGCCCGTTTCGTTGGTTGGCTTAGGCA
128 TGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* ** * ** * * * *
17540242 TAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGAAGGTTTTGGCAATGGGATTG-TAGC
1 TACGGAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGC
* * * * * * * * * *
17540305 ATGCAGTGGGGGACCGGGCCGATCCCTGGCTTGCGTATTATGCCTCT-CGACTAGCTT-AGTGCC
65 ACGCAG-AGGGGACCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCG-GTCGGTTGAGCGCC
*
17540368 TGCACGCTCATTTCGTGGGTTGACTTAGGCA
128 TGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
17540399 TACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGACAGC
1 TACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGC
* * * * *
17540463 ACGCAGAGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGACCACCCG
65 ACGCAGAGGGGACCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCGGTCGGTTGAGCGCCTG
*
17540528 CACGCTCGTTTCGTGGGTTGCCTTAGGCA
130 CACGCTCGTTTCGTGGGTTGACTTAGGCA
*
17540557 TACAGAGTTCATTCCATGTCTAAG
1 TACGGAGTTCATTCCATGTCTAAG
17540581 CCCCAGCCGG
Statistics
Matches: 263, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 123 0.47
158 136 0.52
159 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
TACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCA
CGCAGAGGGGACCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCGGTCGGTTGAGCGCCTGC
ACGCTCGTTTCGTGGGTTGACTTAGGCA
Found at i:17540600 original size:158 final size:158
Alignment explanation
Indices: 17540155--17540600 Score: 463
Period size: 157 Copynumber: 2.8 Consensus size: 158
17540145 AACACGTAAG
* * * * * *
17540155 GGGGACCAGGCTGATCCTCGGCTTACGTATTCTACCTCTCCGGCCGGTTGAGCGCCTGCATGCCC
1 GGGGACCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCGGTCGGTTGAGCGCCTGCACGCTC
* * * *
17540220 GTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAA-GG
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC-AAGGG
** * * * * *
17540284 TTTTGGCAATGGGATTGTAGCATGCAGTG
130 TTGCGGCAATAGGATCGCAGCACGCAGTA
* * * * * * * *
17540313 GGGGACCGGGCCGATCCCTGGCTTGCGTATTATGCCTCT-CGACTAGCTT-AGTGCCTGCACGCT
1 GGGGACCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCG-GTCGGTTGAGCGCCTGCACGCT
* ** * *
17540376 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAG
65 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAG
*
17540439 GGTTGCGGCAGTAGGATCGACAGCACGCAG-A
128 GGTTGCGGCAATAGGATCG-CAGCACGCAGTA
* * * * *
17540470 GGGGATCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGACCACCCGCACGCTC
1 GGGGACCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCGGTCGGTTGAGCGCCTGCACGCTC
* *
17540535 GTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGT
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGT
17540600 T
131 T
17540601 ATGGTAGCAG
Statistics
Matches: 228, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 112 0.49
158 110 0.48
159 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.25
Consensus pattern (158 bp):
GGGGACCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTCCGGTCGGTTGAGCGCCTGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGT
TGCGGCAATAGGATCGCAGCACGCAGTA
Found at i:17540768 original size:26 final size:26
Alignment explanation
Indices: 17540738--17540790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17540728 GTTGACTTAG
*
17540738 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17540764 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17540790 G
1 G
17540791 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17541018 original size:671 final size:665
Alignment explanation
Indices: 17539725--17541151 Score: 1689
Period size: 671 Copynumber: 2.1 Consensus size: 665
17539715 CCCAGTCTAA
* **
17539725 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * *
17539790 GCACGTA-AGGGGGATC-GAATCGATCCCCGGCTTACGCATTCTACCTCTCCGACTGACTGAGCG
66 GCACGCAGA-GGGGATCGGAATCGATCCCCGGCTTACGCATTCTACCTCTCCGACTGACTGACCA
* ** *
17539853 CCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
130 CCCGCACGCCTGTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCC
* * ** * * *
17539918 AGACCGAGGGTTGTGGCAGCGAGATCAGCAGCACACAGAGGGGGATTGGGCTGATCCCCGGCTTG
195 AGACCAAGGGTTGTAGCAGCGAGATCAGCAGCACACAGAAAGGGATAGGGCTGATCCCCAGCTTA
* * * * * *
17539983 TGCATTATGCCTCTTCGGTCGGCCTCTCCGACCGGTTGAGCGCCCATATGCTCGTTTCATGGGTT
260 TACATTATGCCTCTCCGGTCAGCCTATCCGACCAGTTGAGCGCCCATAGGCTCGTTTCATGGGTT
* * *
17540048 GACTTAAGCATACAGAGTTCATCCTCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCAG
325 GACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * *
17540113 ATTGGACCGAGGGTTGCGACAGCAGGATCAGCAACACGTAAGGGGGACCAGGCTGATCCTCGGCT
390 ATCGGACCGAGGGTT-----AGCAGGA-CAG--ACACGTAAGGGGGACCAGGCCGATCCCCGGCT
* * * * * *
17540178 TACGTATTCTACCTCTCCGGCCGGTTGAGCGCCTGCATGCCCGTTTCGTTGGTTGGCTTAGGCAT
447 TACGTATTCTACCTCTCCGACCAGCTGAACGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCAT
* * * * * *
17540243 AGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAAGGTTTTGGCAATGGGATTGTAGCATG
512 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAACGAGATGGTAGCACG
* * * * *
17540308 CAGTGGGGGACCGGGCCGATCCCTGGCTTGCGTATTATGCC-TCTCGA-CTAGCTTAGTGCCTGC
577 CAGAGGAGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTTCTCGATC-AGCTCAGCGCCTGC
17540371 ACGCTCATTTCGTGGGTTGACTTAG
641 ACGCTCATTTCGTGGGTTGACTTAG
* *
17540396 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGACA
** * * **
17540461 GCACGCAGAGGGGATCGGGCT-GATCCCCGGCTTGCGCATTCTACCTCTCCG-GTCGGTTGACCA
66 GCACGCAGAGGGGATCGGAATCGATCCCCGGCTTACGCATTCTACCTCTCCGACT-GACTGACCA
17540524 CCCGCACG-CTCGTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGC
130 CCCGCACGCCT-GTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGC
* * * *
17540588 CGGACCAAGGGTTATGGTAGCAGGACTGGCAACAGGATCGGCAGCACGCGGAAAGGGATAGGGCT
194 CAGACCAAGGG-T-T-GTAGCA-G-C--G----A-GATCAGCAGCACACAGAAAGGGATAGGGCT
* * *
17540653 GATCCCCAGCTTATACCTTATGCCTCTCCGGTCAGCCTATCCCG-TCAGTTGAGCGCCCGTAGGC
247 GATCCCCAGCTTATACATTATGCCTCTCCGGTCAGCCTAT-CCGACCAGTTGAGCGCCCATAGGC
* *
17540717 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCC
311 TCGTTTCATGGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCC
* * * *
17540782 CAGTGTAAGATCAGATCGGACCGAGGGTT-GC-GG-CAG-CACGTAGGGGGGATCGGGCCGATCC
376 CAGTCTAAGATCAGATCGGACCGAGGGTTAGCAGGACAGACACGTAAGGGGGACCAGGCCGATCC
* * * *
17540843 CCGGCTT-GGTCATTCTGCCT-TTCGACCAGCTGAACGCCTGCACGCCCTTTTCGTGGGTTGGCT
441 CCGGCTTACGT-ATTCTACCTCTCCGACCAGCTGAACGCCTGCACGCCCGTTTCGTGGGTTGGCT
* * * * *
17540906 TAGGCATAGGGGGTTCATTCCATGTCTAAGCCCCAGTCGGAGCGAGGGTTGTGGCAGCGAGATCG
505 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAACGAGAT-G
* *
17540971 GTAGCACGCAGAGGAGGACCGGGCCGAT-CCTCGGCTTGCGCATTATGCCTTTTCGATCGGCTCA
569 GTAGCACGCAGAGGAGGACCGGGCCGATCCCT-GGCTTGCGCATTATGCCTTCTCGATCAGCTCA
* *
17541035 GCGCGTGCACGCTCATTTCGTGGGTTGACTTAT
633 GCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
17541068 GCATACGAAGTTCATTCCCAGTGTAAGATCGGATCGGA-CTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCAGGATCGAC
* * *
17541132 AACATGCAGTGAGGGATCGG
65 AGCACGCAGAG-GGGATCGG
17541152 CCTCTCCGAC
Statistics
Matches: 643, Mismatches: 89, Indels: 46
0.83 0.11 0.06
Matches are distributed among these distances:
670 97 0.15
671 250 0.39
672 107 0.17
673 10 0.02
674 8 0.01
675 1 0.00
676 3 0.00
677 2 0.00
678 1 0.00
682 1 0.00
683 160 0.25
684 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (665 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGAGGGGATCGGAATCGATCCCCGGCTTACGCATTCTACCTCTCCGACTGACTGACCAC
CCGCACGCCTGTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCA
GACCAAGGGTTGTAGCAGCGAGATCAGCAGCACACAGAAAGGGATAGGGCTGATCCCCAGCTTAT
ACATTATGCCTCTCCGGTCAGCCTATCCGACCAGTTGAGCGCCCATAGGCTCGTTTCATGGGTTG
ACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
TCGGACCGAGGGTTAGCAGGACAGACACGTAAGGGGGACCAGGCCGATCCCCGGCTTACGTATTC
TACCTCTCCGACCAGCTGAACGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
ATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAACGAGATGGTAGCACGCAGAGGAGG
ACCGGGCCGATCCCTGGCTTGCGCATTATGCCTTCTCGATCAGCTCAGCGCCTGCACGCTCATTT
CGTGGGTTGACTTAG
Found at i:17541234 original size:26 final size:26
Alignment explanation
Indices: 17541197--17541254 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
17541187 CGTCTGTTGG
17541197 CTAAGGCATACGGAGTTCATT-CCATGT
1 CTAA-GCATACGGAGTTCATTCCCA-GT
17541224 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
17541250 CTAAG
1 CTAAG
17541255 ATTTTGACGG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:17542997 original size:26 final size:26
Alignment explanation
Indices: 17542947--17542999 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17542937 GTTGGCTTAG
*
17542947 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17542973 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17542999 G
1 G
17543000 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17543653 original size:157 final size:157
Alignment explanation
Indices: 17543483--17543852 Score: 381
Period size: 158 Copynumber: 2.3 Consensus size: 157
17543473 CTGAATGCCC
* * * * * *
17543483 GCACGCCCATTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAGCCTAGTTGGACC
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGCCAAATTGGACC
* * * * * ** * *
17543548 GAGGGTTGC-GACAGCAGGACCAG-CAGCACGTAGAGG-GGGACCGGGCTGATCCCTGGCTTGCG
66 AAGGGTTGCAG-CAGCAAGA-CAGAAAGCACGTAG-GGTGAGACCGAGCCAATCCCTGGCTTACA
* * *
17543610 CATTATGCCTCT-TCGGTCGGCTCAGCGCTT
128 CATTATGCCTCTCT-GGTCGACTCAGCACAT
* * * **
17543640 GTACGCTCGTTTCATGGGTTGGCTTATGCATACGGAGTTCATTCCCAAT-TAAAATCAAATTGGA
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CC-ATGTCAAGCCAAATTGGA
* **
17543704 CCAAGGGTTGCAGCTGCAAGATTGAAAGCACGTAGGGTGAGACCGAGCCAATCCCTGGCTTACAC
64 CCAAGGGTTGCAGCAGCAAGACAGAAAGCACGTAGGGTGAGACCGAGCCAATCCCTGGCTTACAC
* *
17543769 ATTCTGCCTCTCTGGTCGACTGAGCACAT
129 ATTATGCCTCTCTGGTCGACTCAGCACAT
*
17543798 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC-AAGC
17543853 ATACAGAGTT
Statistics
Matches: 171, Mismatches: 34, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 43 0.25
158 122 0.71
159 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (157 bp):
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGCCAAATTGGACC
AAGGGTTGCAGCAGCAAGACAGAAAGCACGTAGGGTGAGACCGAGCCAATCCCTGGCTTACACAT
TATGCCTCTCTGGTCGACTCAGCACAT
Found at i:17543861 original size:26 final size:26
Alignment explanation
Indices: 17543825--17543877 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17543815 GTTGGCTTAG
*
17543825 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCGCA-GTCTAA
17543851 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
17543877 G
1 G
17543878 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:17545086 original size:26 final size:26
Alignment explanation
Indices: 17545048--17545100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17545038 GTTGCCTTAG
*
17545048 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17545074 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17545100 G
1 G
17545101 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17546108 original size:159 final size:160
Alignment explanation
Indices: 17545922--17546303 Score: 457
Period size: 159 Copynumber: 2.4 Consensus size: 160
17545912 CGGTCGACTG
* * * * *
17545922 AGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATC
* * * * *
17545987 AG-CCAGACCAAGGGTTGTGGCAGCGGGACCGGTAGCACACAGAGGGGGACCGGGCCAATCCCCG
66 AGACCAGACCAAGGGTTGTGACAGCAGGACCGATAGCACACAGAGGGGGACCGAGCCAATCCCCA
* *
17546051 GCTTGCGT-ATTATACCTCTTCAGCCAGCTC
131 GCTTGC-TCATTATACCTCTCCAACCAGCTC
* * * * *
17546081 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTTTAAG-AT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAT
* * * * * *
17546144 CAGACCAGACCGAGGGTTGTGATAGTAGGATCGATAGCACATAGGGGGGGACCGAGCCAATCCCC
65 CAGACCAGACCAAGGGTTGTGACAGCAGGACCGATAGCACACAGAGGGGGACCGAGCCAATCCCC
* * * * *
17546209 AGCTTGCTCATTCTGCCTCTCCAATCTGCTG
130 AGCTTGCTCATTATACCTCTCCAACCAGCTC
*
17546240 AACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
17546304 ACGGAGTTCA
Statistics
Matches: 185, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
158 8 0.04
159 172 0.93
160 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (160 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATC
AGACCAGACCAAGGGTTGTGACAGCAGGACCGATAGCACACAGAGGGGGACCGAGCCAATCCCCA
GCTTGCTCATTATACCTCTCCAACCAGCTC
Found at i:17546325 original size:26 final size:26
Alignment explanation
Indices: 17546274--17546326 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17546264 GTTGGCTTAG
*
17546274 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
17546300 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
17546326 G
1 G
17546327 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17547512 original size:26 final size:26
Alignment explanation
Indices: 17547483--17547535 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17547473 GTTGGCTTAG
17547483 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17547509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17547535 G
1 G
17547536 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17547892 original size:26 final size:26
Alignment explanation
Indices: 17547862--17547914 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17547852 GTTGACTTAG
17547862 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17547888 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17547914 G
1 G
17547915 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17548388 original size:158 final size:156
Alignment explanation
Indices: 17547888--17548381 Score: 467
Period size: 159 Copynumber: 3.1 Consensus size: 156
17547878 CCCAGTCTAA
* * * * *
17547888 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGAACCGAGGGTTGCGGCAGCAGGATCGACA
** * * * *
17547953 GCACATAGGGGGGATCGGGCTAATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCC
66 GCACA-AGGGGGGATCGGGCCGATCCCCGGCTT-CGCATTTTGCCTCTCCGACTGGCTGAGCGCC
* *
17548018 CGCACGCCCCGTTTCGTGGGTTGGCTTAG
129 CGAACG-CTCGTTTCGTGGGTTGGCTTAG
* * * * * *
17548047 GCATAGGGAGTTCATT-CCATGACTAAG-CCCCAGCCGAACTGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCGA-CCGAACCGAGGGTTGCGGCAGCAGGATC-G
* * * * * *
17548109 GCAGCACGCAGAGGGTGATCGGGCCGATCCCCAGCTT-GCATATTATGCCTCTCC-AATCGGCTC
63 ACAGCAC-AAG-GGGGGATCGGGCCGATCCCCGGCTTCGCAT-TT-TGCCTCTCCGACT-GGCTG
* * * *
17548172 AACGCCCGAACGCTAGTTTCGTAGGTTGACTTAG
123 AGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * *
17548206 GCATACAGAGTTCATTCCCAGTCTAAGATCTGACCAAACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGAACCGAGGGTTGCGGCAGCAGGATCGACA
* *** * * *
17548271 GCATCAAGGGGGGACCAAACCGGTCCTCGGCTTACGCATTTTGCCTCTCCGACTGGCTGAGCACC
66 GCA-CAAGGGGGGATCGGGCCGATCCCCGGCTT-CGCATTTTGCCTCTCCGACTGGCTGAGCGCC
* *
17548336 CGTACGCTCGTTTCATGGGTTGGCTTAG
129 CGAACGCTCGTTTCGTGGGTTGGCTTAG
17548364 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
17548382 ATGTCTAGGC
Statistics
Matches: 263, Mismatches: 57, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
158 84 0.32
159 126 0.48
160 53 0.20
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGAACCGAGGGTTGCGGCAGCAGGATCGACA
GCACAAGGGGGGATCGGGCCGATCCCCGGCTTCGCATTTTGCCTCTCCGACTGGCTGAGCGCCCG
AACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17548440 original size:26 final size:26
Alignment explanation
Indices: 17548361--17548433 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
17548351 TGGGTTGGCT
17548361 TAGGCATACGGAGTTCATTCCATGTC
1 TAGGCATACGGAGTTCATTCCATGTC
17548387 TAGGCATACGGAGTTCATTCCATGTC
1 TAGGCATACGGAGTTCATTCCATGTC
*
17548413 TAGGCATACAGAGTTCATTCC
1 TAGGCATACGGAGTTCATTCC
17548434 TAGTCTAAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCATGTC
Found at i:17550144 original size:26 final size:26
Alignment explanation
Indices: 17550114--17550166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17550104 GTTGACTTAG
17550114 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17550140 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17550166 G
1 G
17550167 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17550614 original size:159 final size:157
Alignment explanation
Indices: 17550398--17550799 Score: 457
Period size: 159 Copynumber: 2.5 Consensus size: 157
17550388 CTCGGCTTAC
* * *
17550398 GCATTATGCCTCTTCGGCTGGCTCAGCGCCCACACGCTCATTTCCTGGGTTGACTTATGCATACG
1 GCATTCTGCCTCTTCGGCT-GCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACG
* * * * * *
17550463 GAGTACATTCC-TAGTGTAAGATTGGACCGGAGCGAGGGTTGTGATAGCAAGATCGACAACACAC
65 GAGTTCATTCCAT-GTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGATCGACAACACAC
* * *
17550527 AGAGGGGGACCGGGCTGATCCCTGACTTGCA
129 AG-GGGGGACCGAGCCGATCCCCGACTTG-A
* * * *
17550558 G-ATTTTGCCTCTTCGGCCTGCTCAGCGCCCTCACACTCGTTTCATGGGTTAACTTATGCATACG
1 GCATTCTGCCTCTTCGG-CTGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACG
* * * *
17550622 GAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATATA
65 GAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGATCGACAACACACA
** * *
17550687 GGGGGGATTGAGCCGATCCCCGGCTTGT
130 GGGGGGACCGAGCCGATCCCCGACTTGA
* * * * * * *
17550715 GCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTTCGG-CTGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACG
17550780 GAGTTCATTCCATGTCTAAG
65 GAGTTCATTCCATGTCTAAG
17550800 CATATGGAGT
Statistics
Matches: 205, Mismatches: 34, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
157 1 0.00
158 92 0.45
159 108 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (157 bp):
GCATTCTGCCTCTTCGGCTGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACGG
AGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGATCGACAACACACAG
GGGGGACCGAGCCGATCCCCGACTTGA
Found at i:17550782 original size:158 final size:158
Alignment explanation
Indices: 17550140--17550799 Score: 528
Period size: 158 Copynumber: 4.2 Consensus size: 158
17550130 CCCAGTCTAA
* ** ** **
17550140 GCATACGGAGTTCATTCCCAT-TCTAAGATCGGACCGGAACGAGGGAAGTGGTAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGATCGAC
** * ** * * * * * *
17550204 AGCACGTAAGATGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGTTGAGCGC
65 AGCACACAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTCAGCGC
* * *
17550269 CCGCAC-TTCCGTTTCTTGGGTTGGCTTAG
130 CCGCACGCT-CGTTTCATGGGTTGACTTAG
* * ** ** * * * * **
17550298 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCAAACCGAGGGTTGTGGCAACGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGACAGCAGGATCGAC
** * * * * * *
17550362 AGCATGCAGAGGGG-TACCAGGCC-ATCCTCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAGC
65 AGCACACAGGGGGGAT-CGA-GCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTCAGC
* * * *
17550425 GCCCACACGCTCATTTCCTGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
17550456 GCATACGGAGTACATTCC-TAGTGTAAGATTGGACCGGAGCGAGGGTTGTGATAGCAAGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGATCGAC
* * * * * *
17550520 AACACACAGAGGGGGACCGGGCTGATCCCTGACTTGCAG-ATTTTGCCTCTTCGGCCT-GCTCAG
65 AGCACACAG-GGGGGATCGAGCCGATCCCCGACTTGC-GCATTCTGCCTCTTCGG-CTGGCTCAG
* * * *
17550583 CGCCCTCACACTCGTTTCATGGGTTAACTTAT
127 CGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
17550615 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * * * *
17550680 GCATATAGGGGGGATTGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGG-TCGGCTGAGCGC
66 GCACACAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCT-GGCTCAGCGC
* * *
17550744 CCGCATGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGACTTAG
17550773 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17550800 CATATGGAGT
Statistics
Matches: 388, Mismatches: 98, Indels: 32
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 9 0.02
158 248 0.64
159 126 0.32
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
GCACACAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:17550802 original size:26 final size:26
Alignment explanation
Indices: 17550773--17550825 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17550763 GTTGGCTTAG
17550773 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
17550799 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17550825 G
1 G
17550826 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17551533 original size:26 final size:26
Alignment explanation
Indices: 17551497--17551548 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17551487 GTTGACTTAG
17551497 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
17551523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17551549 AATCGAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17551835 original size:159 final size:158
Alignment explanation
Indices: 17551523--17551966 Score: 477
Period size: 159 Copynumber: 2.8 Consensus size: 158
17551513 CCCAATCTAA
* * * * * * * * *
17551523 GCATACGGAGTTCATTCCCAGTCTAAAATC-GAACCGGACTGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACAGAGTTCATTCCTAGTCTAAGACCAG-ATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
17551587 AACACGCAGGGGGGACTGGGCCGATCCCCAGCTTGGGCATTCTGCCTCTCCAACCGACTGAGCGC
65 AGCACGTAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
* *
17551652 CCGCATGCCCGTTTCATGGGTTGGCTTAG
130 CCACACGCCCGTTTCATGGGTTGGCTTAG
* *
17551681 GCATA-AGGAGTTCATTCC-ATGTCTAAGCCCCAG-TC-GAACCGAGGGTTGTGGCAGCGGGATC
1 GCATACA-GAGTTCATTCCTA-GTCTAAG-ACCAGATCAG-ACCGAGGGTTGTGGCAGCAGGATC
* * * *
17551742 GACAGCACGTAGAGGGCGA-TCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTT
62 GACAGCACGTAG-GGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTG
* *
17551806 AGCATCCACACGCTCGTTTCATGGGTTGGCTTAG
125 AGCACCCACACGCCCGTTTCATGGGTTGGCTTAG
* * *
17551840 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGACCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
17551905 GCACGTAGGGGGGACTGGATCGGTCCCCAGCTTGCGTATTCTGCCCCTCCGGCCGGCTGAGC
66 GCACGTAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
17551967 GCTTTTACGC
Statistics
Matches: 236, Mismatches: 38, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
157 2 0.01
158 99 0.42
159 131 0.56
160 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCTAGTCTAAGACCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
CACACGCCCGTTTCATGGGTTGGCTTAG
Found at i:17552012 original size:158 final size:156
Alignment explanation
Indices: 17551523--17552016 Score: 510
Period size: 158 Copynumber: 3.1 Consensus size: 156
17551513 CCCAATCTAA
* * * * *
17551523 GCATACGGAGTTCATTCCCAGTCTAAAATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGAATC-GACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
17551588 ACACGCAGGGGGGACTGGGCCGATCCCCAGCTTGGGCATTCTGCCTCTCCAACCGACTGAGCGCC
64 GCACGTAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCT
* * *
17551653 CGCATGCCCGTTTCATGGGTTGGCTTAG
129 CACACGCTCGTTTCATGGGTTGGCTTAG
* ** * * *
17551681 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGAATCG-ACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
17551746 GCACGTAGAGGGCGA-TCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTTAGC-
64 GCACGTAG-GGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
17551809 ATCCACACGCTCGTTTCATGGGTTGGCTTAG
127 CT-CACACGCTCGTTTCATGGGTTGGCTTAG
* * *
17551840 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGAATC-GACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
17551905 GCACGTAGGGGGGACTGGATCGGTCCCCAGCTTGCGTATTCTGCCCCTCCGGCCGGCTGAGCGCT
64 GCACGTAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCT
*** *
17551970 TTTACGCTC-ATTC-TGTTGGTTGGCTTAG
129 CACACGCTCGTTTCATG--GGTTGGCTTAG
*
17551998 GCACACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
17552017 TGTTTAAGCA
Statistics
Matches: 274, Mismatches: 51, Indels: 23
0.79 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 8 0.03
158 131 0.48
159 131 0.48
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGAATCGACCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGTAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCTCA
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17552731 original size:26 final size:26
Alignment explanation
Indices: 17552695--17552747 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17552685 GTTGGCTTAG
17552695 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17552721 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17552747 G
1 G
17552748 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17552783 original size:697 final size:693
Alignment explanation
Indices: 17551423--17553443 Score: 2354
Period size: 697 Copynumber: 2.9 Consensus size: 693
17551413 TACCACCCGT
* * * * ** * * * * * *
17551423 TCGATCCCCGGCATGCGCATCCTGCCTCTCTGGTCGGCTGAGCGGCCACACGTTCGTTTCGTGGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGG
* * *
17551488 TTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAAATC
66 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * *
17551553 GAACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAACACGCAGGGGGGA-CTGGGCCGATCCCCA
131 GGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATC-GGGCCGAT-CCCA
* * * * * *
17551617 GCTTGGGCATTCTGCCTCTCCAACCGACTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGG
194 GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
* ** * * *
17551682 CATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCGGGATCGACAG
259 CATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGGCAG
* * * * * *
17551747 CACGTAGAGGGCGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTTAGCATC
324 CAAGTAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACC
* * * *
17551812 CACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAG
389 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG
** ** * * *
17551877 ACCGAGGGTTGTGGCAACAGGATCGACAGCACGTAGGGGGGACTGGATCGGTCCCCAGCTTGCGT
454 ACCGAGGGTTGTTACAGTAGGATCGACAGCACGTAGGGGGGAC-GGGTCGGTCCCCGGCTTGCGC
* ** * * * * *** * * * *
17551942 ATTCTGCCCCTCCGGCCGGCTGAGCGCTTTTACGCTCATTCTGTTGGTTGGCTTAGGCACACGGA
518 ATTCTACCTTTCCGGACAGCTAAGCAC-CGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGA
* * * * * *
17552007 GTTCATTCCATGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTTA
582 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTA
* * * * * *
17552072 CGGCAGCGGGACCAGCAGCAGGATCTGTAGCATGCAGGAGGGATCAGG
647 CAGAAGCAGGACCAGCAGCAGGATC-ATAGCACGCAGGAGGGACCAGG
* *
17552120 TCGATCTCTGGCTTACGCATTCTGCCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGG
* * * *
17552185 TTGACTTAGGCATACGGAGTTCATCCCCAGCCTAAGAATATGAAGTTCATTCCCAGTCTAAGATT
66 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * *
17552250 GGACTAGACTGAGGGTTGCGACAGCAAGATCGGTAGCACGTAGGGGGGATCGGGCCGATCCTCAG
131 GGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCC-CAG
* * * * *
17552315 CTTGTGCATTCTGCCTCTCCGGTGGGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGC
195 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
* * * *
17552380 ATAGGGAGTTCATTCTATGTTTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGGCAGT
260 ATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGC
* * * * **
17552445 AAGCAGAGGGGGATCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGACCAGCTCCGTGCCC
325 AAGTAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCC
* * * *
17552510 GCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGA
390 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA
* *
17552575 CCGAGGGTTGTTACAGTAGGATCGACAGCACGTAGGGGGGATCGGGCCGGTCCCCGGCTTGTGCA
455 CCGAGGGTTGTTACAGTAGGATCGACAGCACGTAGGGGGGA-CGGGTCGGTCCCCGGCTTGCGCA
*** *
17552640 TTCTACCTTTCTAAACTGCTAAGCAACCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAG
519 TTCTACCTTTCCGGACAGCTAAGC-ACCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAG
* *
17552705 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGC
583 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTAC
* * *
17552770 AGAAGCAGGACCAGCAGCAGGATCATAGCACGTAGGGGGGACCGGG
648 AGAAGCAGGACCAGCAGCAGGATCATAGCACGCAGGAGGGACCAGG
** * ** * * **
17552816 TCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTAATGGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGG
* * *
17552881 TTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGATGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * *
17552946 GGA-TCGGAGC-GAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCC
131 GGACT-GGA-CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCCA
17553009 G-TTGCGCATTCTGCCTC-CTCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
194 GCTTGCGCATTCTGCCTCTC-CGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * *
17553072 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTATGGTAGCGGGACTGGTA
258 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGGCA
* * * * * ** *
17553137 GCACA-TAGAGGGGGATCGGGCCGATCCAT-TGCTTGAGTATTATCCCTCTTCGGTCGGTTCAGC
323 GCA-AGTAGAGGGGGATCGGGCCGATCC-TCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGC
* * *
17553200 ACCTGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAATTCATTCCCAGTCTAAGATCGGAT
386 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * * * *
17553265 CGGACCGA-GG--GTTACGGTAGCGGGATCGACAGCACGCAGTGGGGACCGGGTCGATCCCTGGC
451 CAGACCGAGGGTTGTTACAGTA---GGATCGACAGCACGTAGGGGGGA-CGGGTCGGTCCCCGGC
* * * * *
17553327 TTGGGCATTCTACCTTTCCGGTCAGC-AGAGCGCCCGCACGCTCGTTTCGTGCGTTGGCTTAGGC
512 TTGCGCATTCTACCTTTCCGGACAGCTA-AGC-ACCGCACGCTCGTTTTGTGGGTTGGCTTAGGC
* * *
17553391 ATACGGTGTTCATTCCATCTCTAAGCATACGAAGTTCATTCCTAGTCTAAGAT
575 ATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
17553444 TTTGAGCCAC
Statistics
Matches: 1116, Mismatches: 195, Indels: 29
0.83 0.15 0.02
Matches are distributed among these distances:
691 8 0.01
693 4 0.00
694 357 0.32
695 5 0.00
696 179 0.16
697 560 0.50
698 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (693 bp):
TCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGG
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
GGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCCAGC
TTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCA
TAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCA
AGTAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
CGAGGGTTGTTACAGTAGGATCGACAGCACGTAGGGGGGACGGGTCGGTCCCCGGCTTGCGCATT
CTACCTTTCCGGACAGCTAAGCACCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTACAGA
AGCAGGACCAGCAGCAGGATCATAGCACGCAGGAGGGACCAGG
Found at i:17552928 original size:26 final size:26
Alignment explanation
Indices: 17552890--17552942 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17552880 GTTGACTTAG
17552890 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
17552916 GCATACGATGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17552942 G
1 G
17552943 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17552933 original size:195 final size:188
Alignment explanation
Indices: 17552537--17553099 Score: 598
Period size: 195 Copynumber: 3.0 Consensus size: 188
17552527 TTTGACTTAG
* * * ** *
17552537 GCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGACCGAGGGTT---G--TTA-CAGTAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGCAGCAGGA
* * * * ** * * *
17552596 TCGACAGCACGTAGGGGGGATCGGGCCGGTCCCCGGCTTGTGCATTCTACCTTTCTAAACTGCTA
66 TC-A-AGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTG
** *
17552661 AGCAACCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 AGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
17552721 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCAGAAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-G--GCA--A-CAGCA
*
17552786 GCAGGATCATAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATC
60 GCAGGATCA-AGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATC
* * * * *
17552851 GGTTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGAAGTTCA-TCCCTAGTCTA
124 GGCTGAGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTA
17552915 A
188 A
* * * * *
17552916 GCATAC-GATGTTCATTCCCAGTCTAAGATCGGATCGGAGCGAGGGTTGCGGCAACAGGATC--G
1 GCATACGGA-GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGCAGCAGG
* *
17552978 A-C-AGCACGCAGGGGGGATCGGGTCGATCCCC-G-TTGCGCATTCTGCCTC-CTCGATCGGCTG
65 ATCAAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTC-CGATCGGCTG
* * *
17553038 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 AGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17553098 GC
1 GC
17553100 CCCAACCGGA
Statistics
Matches: 320, Mismatches: 43, Indels: 34
0.81 0.11 0.09
Matches are distributed among these distances:
181 1 0.00
182 74 0.23
183 5 0.02
184 70 0.22
186 1 0.00
187 2 0.01
189 5 0.02
190 2 0.01
192 3 0.01
194 7 0.02
195 141 0.44
196 9 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (188 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGCAGCAGGA
TCAAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAG
CGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Done.