Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 152 of 402
Found at i:17553415 original size:158 final size:158
Alignment explanation
Indices: 17552916--17553406 Score: 483
Period size: 159 Copynumber: 3.1 Consensus size: 158
17552906 CCTAGTCTAA
* * * * *
17552916 GCATAC-GATGTTCATTCCCAGTCTAAGATCGGATCGGAGCGAGGGTTGCGGCAACAGGATCGAC
1 GCATACGGA-GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCGGGATCGAC
* * * *
17552980 AGCACGCAGGGGGGATCGGGTCGATCCC-CG-TTGCGCATTCTGCC-TCCTCGATCGGCTGAGCG
65 AGCACGCAGGGGGGATCGGGTCGATCCCTCGCTTGAGCATTCTACCTTTC-CGGTCGGCTGAGCG
*
17553042 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * * * *
17553072 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCAAGGGTTATGGTAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCGGGATC-GA
* ** * * * * * * * *
17553135 TAGCACATAGAGGGGGATCGGGCCGATCCATTGCTTGAGTATTATCCCTCTT-CGGTCGGTTCAG
64 CAGCACGCAG-GGGGGATCGGGTCGATCCCTCGCTTGAGCATTCTACCT-TTCCGGTCGGCTGAG
* * * * *
17553199 CACCTGCACGCTCGTTTCATGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17553231 GCATACGGAATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCGGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCGGGATCGACA
* * * * * *
17553296 GCACGCAGTGGGGACCGGGTCGATCCCTGGCTTGGGCATTCTACCTTTCCGGTCAGCAGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCTCGCTTGAGCATTCTACCTTTCCGGTCGGCTGAGCGCC
*
17553361 CGCACGCTCGTTTCGTGCGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17553389 GCATACGGTGTTCATTCC
1 GCATACGGAGTTCATTCC
17553407 ATCTCTAAGC
Statistics
Matches: 256, Mismatches: 68, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
155 4 0.02
156 47 0.18
157 21 0.08
158 80 0.31
159 99 0.39
160 4 0.02
161 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCGGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCTCGCTTGAGCATTCTACCTTTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17554153 original size:26 final size:26
Alignment explanation
Indices: 17554113--17554165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17554103 GTTGACTTAG
*
17554113 GCATATAGAGGTCA-TCCCTAGTCTAA
1 GCATACAGAGGTCATTCCC-AGTCTAA
*
17554139 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
17554165 G
1 G
17554166 ATTCGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:17554523 original size:159 final size:159
Alignment explanation
Indices: 17554139--17554524 Score: 376
Period size: 159 Copynumber: 2.4 Consensus size: 159
17554129 CCTAGTCTAA
* * *
17554139 GCATACAGAGTTCATTCCCAGTCTAAGATTC-GACCAGACCGAGGGTTACGGCAGTAGGATC--A
1 GCATACAGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACTGAGGGTTACGGTAGCAGGATCGTA
* * * * * * *
17554201 GCAGCACGCAGGGGGAGTCGGGCTGATCCCCGGCATGCGCATTCTGCCTCTCCGATCGGTTGAGC
65 GCA-CACGCAGGGGGAGCCGGACCGATCCCCGGCATCCGCATTATGCCTCTCCGACCGGTTCAGC
* *
17554266 ACCCGCACGTCTGTTTTGTGGGTTGGCTTAG
129 ACCCGCACGTCTGTTTCGTGGGTTGACTTAG
** * *** * ** * *
17554297 GCATAGGGAGTTCATT-CCATGTATAACCCCCA-ACCGGA-TCGAGGGTTGTGGTAGCTGGACCG
1 GCATACAGAGTTCATTCCCA-GTCTAA-GATCAGACCAGACT-GAGGGTTACGGTAGCAGGATC-
* *
17554359 GTAGCACACAG-AGGGGGA-CCGGACCGATCCCCGGCTTCCGCATTATGCCTCTTCGACCGGTTC
62 GTAGCACAC-GCAGGGGGAGCCGGACCGATCCCCGGCATCCGCATTATGCCTCTCCGACCGGTTC
*
17554422 AGCACCCGCATG-CTTGTTTCGTGGGTTGACTTAG
126 AGCACCCGCACGTC-TGTTTCGTGGGTTGACTTAG
* *
17554456 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCG-TA
17554521 GCAC
65 GCAC
17554525 GTAGGGGGGA
Statistics
Matches: 176, Mismatches: 39, Indels: 25
0.73 0.16 0.10
Matches are distributed among these distances:
157 3 0.02
158 44 0.25
159 110 0.62
160 14 0.08
161 5 0.03
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGTAG
CACACGCAGGGGGAGCCGGACCGATCCCCGGCATCCGCATTATGCCTCTCCGACCGGTTCAGCAC
CCGCACGTCTGTTTCGTGGGTTGACTTAG
Found at i:17555352 original size:26 final size:26
Alignment explanation
Indices: 17555322--17555374 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17555312 GTTGACTTTG
17555322 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*** *
17555348 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17555374 G
1 G
17555375 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17555695 original size:26 final size:26
Alignment explanation
Indices: 17555665--17555717 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17555655 GTTGGCTTAG
17555665 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17555691 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17555717 G
1 G
17555718 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17555897 original size:26 final size:26
Alignment explanation
Indices: 17555861--17555913 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17555851 GTTGGCTTAG
*
17555861 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17555887 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17555913 G
1 G
17555914 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17555935 original size:196 final size:196
Alignment explanation
Indices: 17555635--17556280 Score: 823
Period size: 196 Copynumber: 3.3 Consensus size: 196
17555625 CGGTTCAGCA
* *
17555635 CCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
* * * * *
17555700 GTTCATTCCTAGTCTAAGATTGGACCGGA-CTGAGGGTTACGGGAGCAGGACCAGTAGCAGGATC
66 GTTCATTCCCAGTCTAAGATCGGATCGGATC-GAGGGTTACGGCAGTAGGACCAGTAGCAGGATC
* *
17555764 GACAGCACGTAGGGGGGATCGGGCCGGTCCCTGGCTTACGTATTTTGCCTCTCCGACCGGCTAAA
130 GACAGCACGTAGGGGGGATCGGGCCGGTCCCTGGCTTACGTATTCTGCCTCTCCGACCGGCTGAA
17555829 CG
195 CG
* ** *
17555831 CTCGCACTTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
* *
17555896 GTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACGGTAGTAGGACCAGTAGCAGGATC-
66 GTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCAGTAGGACCAGTAGCAGGATCG
* * * * * * * *
17555960 AGCAGCACGCAGGGGGGTATCGGGTCGATCCCTGACTTACGTGTTCTACCTCTCCGGCCGGTTGA
131 A-CAGCACGTAGGGGGG-ATCGGGCCGGTCCCTGGCTTACGTATTCTGCCTCTCCGACCGGCTGA
17556025 ACG
194 ACG
* * *
17556028 CCCGCACGCTCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
* ** ** *
17556093 GTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGTGGCAGTAGGACCAACAGTAGGATCG
66 GTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCAGTAGGACCAGTAGCAGGATCG
* * * ** * * *
17556158 ACAGCACGTAGGGGGGACCGAGCCGGT-CCTCGGCTTGCACATTCTGCCTCTTCGACCGGCCGAG
131 ACAGCACGTAGGGGGGATCGGGCCGGTCCCT-GGCTTACGTATTCTGCCTCTCCGACCGGCTGAA
*
17556222 CA
195 CG
* * *
17556224 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCC-TAGTCTAAG
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG
17556281 ATCGGATCGG
Statistics
Matches: 388, Mismatches: 56, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
195 5 0.01
196 210 0.54
197 172 0.44
198 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (196 bp):
CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCAGTAGGACCAGTAGCAGGATCG
ACAGCACGTAGGGGGGATCGGGCCGGTCCCTGGCTTACGTATTCTGCCTCTCCGACCGGCTGAAC
G
Found at i:17556108 original size:26 final size:26
Alignment explanation
Indices: 17556058--17556110 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17556048 GTTGGCTTGG
* *
17556058 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
17556084 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17556110 G
1 G
17556111 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17556603 original size:354 final size:355
Alignment explanation
Indices: 17555954--17556634 Score: 875
Period size: 354 Copynumber: 1.9 Consensus size: 355
17555944 GACCAGTAGC
* * *** *
17555954 AGGATCAGCAGCACGCAGGGGGGTATCGGGTCGATCCCTGACTTACGTGTTCTACCTCTCCGGCC
1 AGGATCAGCAGCACGCAGGGGGGTATCGAGCCGATCCCTGACTTACACATTCTACCTCTCCGACC
** * * * * *
17556019 GGTTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTCTAA
66 GACTGAAAGCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCAGACGGAGTTCATTCCATGTCTAA
* * *
17556084 GCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGTGGCAGTAGGACCAACA
131 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGACCAACA
** * * *
17556149 GTAGGATCGACAGCACGTAGGGGGGACCGAGCCGGTCCTCGGCTTGCACATTCTGCCTCTTCGAC
196 ACAAGATCGACAGCACGTAGGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTACCTCTTCGAC
* * * * * * *
17556214 CGGCCGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTA
261 CGGCCGAGCACCCGAACGCTCATTTCATAGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTA
17556279 AGATCGGATCGGACTGAGGGTTGCGATAGT
326 AGATCGGATCGGACTGAGGGTTGCGATAGT
* *
17556309 AGGATC-GACAGCATGCAGGGGGG-ATCGAGCCGATCCTTGACTTACACATTCTACCTCTCCGAC
1 AGGATCAG-CAGCACGCAGGGGGGTATCGAGCCGATCCCTGACTTACACATTCTACCTCTCCGAC
* * *
17556372 CGACTGAAAGCTCGTACGCTCGTTTCATGGGTTAGCTTAGGCAGACGGAGTTCATTCCATGTCTT
65 CGACTGAAAGCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCAGACGGAGTTCATTCCATGTCTA
* * *
17556437 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGCGGCAGTAGGACCAG
130 AGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGTAGGACCAA
* * * **
17556501 CAACAAGATTGATAGCACGTAGGGGGGATCGAGCCGATCCTCGGCTTGCGTATTCTACCTCTTC-
194 CAACAAGATCGACAGCACGTAGGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTACCTCTTCG
** ** ** *
17556565 AGTTGGTTGAGTGCCTGAACGCTCATTTCATAGGTTGACTTAGACATACGGAGTTCATCCCCAGT
259 A-CCGGCCGAGCACCCGAACGCTCATTTCATAGGTTGACTTAGACATACGGAGTTCATCCCCAGT
17556630 CTAAG
323 CTAAG
17556635 CATACAGAGT
Statistics
Matches: 275, Mismatches: 48, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
353 2 0.01
354 253 0.92
355 20 0.07
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (355 bp):
AGGATCAGCAGCACGCAGGGGGGTATCGAGCCGATCCCTGACTTACACATTCTACCTCTCCGACC
GACTGAAAGCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCAGACGGAGTTCATTCCATGTCTAA
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGACCAACA
ACAAGATCGACAGCACGTAGGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTACCTCTTCGAC
CGGCCGAGCACCCGAACGCTCATTTCATAGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTA
AGATCGGATCGGACTGAGGGTTGCGATAGT
Found at i:17556639 original size:26 final size:26
Alignment explanation
Indices: 17556609--17556660 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17556599 TTGACTTAGA
*
17556609 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* *
17556635 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
17556661 AACGAACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:17560914 original size:26 final size:26
Alignment explanation
Indices: 17560877--17560929 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17560867 GTTCACTTAG
17560877 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17560903 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
17560929 G
1 G
17560930 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17561724 original size:25 final size:26
Alignment explanation
Indices: 17561696--17561747 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17561686 GTTGACTTAG
17561696 GCATAC-GAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17561721 GCATACGGAGTTTATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17561747 G
1 G
17561748 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17562214 original size:26 final size:25
Alignment explanation
Indices: 17562177--17562228 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
17562167 GTTGGTTTAG
* *
17562177 GCATACAAAGTTCTTTCCATGTCTAA
1 GCATACAAAGTTCATT-CAAGTCTAA
*
17562203 GCATACAGAGTTCATTCAAGTCTAA
1 GCATACAAAGTTCATTCAAGTCTAA
17562228 G
1 G
17562229 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (25 bp):
GCATACAAAGTTCATTCAAGTCTAA
Found at i:17562411 original size:26 final size:26
Alignment explanation
Indices: 17562380--17562436 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
17562370 ATGGGTTGAC
17562380 TTAAGCATACGGAGTTCATCCCCAGT
1 TTAAGCATACGGAGTTCATCCCCAGT
* *
17562406 TTAAGCATATGGAGTTCATTCCCAGT
1 TTAAGCATACGGAGTTCATCCCCAGT
*
17562432 CTAAG
1 TTAAG
17562437 ATCAAACCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
TTAAGCATACGGAGTTCATCCCCAGT
Found at i:17563143 original size:26 final size:26
Alignment explanation
Indices: 17563107--17563157 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17563097 TTGGCTTAGG
*
17563107 CATATGGAGTTCATT-CCATGTCTAAT
1 CATACGGAGTTCATTCCCA-GTCTAAT
17563133 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
17563158 GAGTCTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:17564290 original size:158 final size:159
Alignment explanation
Indices: 17563967--17564337 Score: 408
Period size: 158 Copynumber: 2.3 Consensus size: 159
17563957 CCTGGCTTGC
* * * *
17563967 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAGA
** * ** *
17564032 CTGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCAGGTCGATCCTCGGCTTGCAC
66 CTGAGGGTTACGACAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCTCGGCTTGCAC
*
17564097 ATTATGCCTCTTCGGCTGGCTCAGTGCCA
131 ATTATGCCTCTCCGGCTGGCTCAGTGCCA
* ** * * *
17564126 GCACGCTCGTTTCGTAGGTTAACTTAGGCATACGGAGTTCATTCTA-GTCTAAGAATCGAGCCAG
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCCAGCCAG
* * * *
17564190 ACTGA-GGTTACGACAGCAGGATCGACAGCACGTAGAGGGGGATCGGGCCGGATCC-CGGTTTGC
65 ACTGAGGGTTACGACAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCC-GATCCTCGGCTTGC
* * * * *
17564253 GCATTCTGCCTCTCCGGGC-GGTTGAGTGCCC
129 ACATTATGCCTCTCC-GGCTGGCTCAGTGCCA
* * * * *
17564284 GTACGCTCGTTTCGTGGGTTGGCTTAGGCGTACAGAGTTCATTCAATATCTAAG
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17564338 CATATGGAGT
Statistics
Matches: 174, Mismatches: 34, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
158 109 0.63
159 65 0.37
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.25
Consensus pattern (159 bp):
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAGA
CTGAGGGTTACGACAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCTCGGCTTGCAC
ATTATGCCTCTCCGGCTGGCTCAGTGCCA
Found at i:17564726 original size:170 final size:170
Alignment explanation
Indices: 17564344--17564862 Score: 380
Period size: 170 Copynumber: 3.1 Consensus size: 170
17564334 TAAGCATATG
* * * ** *
17564344 GAGTTCATTCCCAGTCTAGGATAAGACC-AAACTGAGGGTTACGACAGCAGGACCAGCAACAGGA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAAAAC-GAAGGTTGTGGCAGCAGGACCAGCAACAGGA
* * * * * *
17564408 TCAACAGCATGCAGGAGGGACAGGGCTGATCCTCAGCTTGCGCATTCTGCCTCTCTGGCCTGCTG
65 TCAACAGCATGCAGAAGGGACAGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGACCTGCTC
* * *
17564473 AGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACA
130 AGCGCTCGAACACTCGTTTCGTGGGTTGACTTAGGCATACA
* * * * ***
17564514 GAGTTCATT-CCATGTCTAA-ACCCTAG-CCAAATC-AAGGGTTGTGGCAGCAGGACCGGTAGTG
1 GAGTTCATTCCCA-GTCTAAGA-TC-AGACCAAAACGAA-GGTTGTGGCAGCAGGACCAGCAACA
* * * *
17564575 GGATCAACAGCATGCAGAAGGGGACTGGGCTGATCCCCGGCTTGGGCATTATGCCTCTCCGATC-
62 GGATCAACAGCATGCAGAA-GGGACAGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGACCT
* *
17564639 GACTCAGTGC-CTGAACACTTGTTTCGT-GGTTGACTTAGGCATAC-
126 G-CTCAGCGCTC-GAACACTCGTTTCGTGGGTTGACTTAGGCATACA
* * *
17564683 GATGTTCATTCCCAGTCTAAGATCAGACCAAAACGAAGGTTGTGGTAGTAGGA--A-CGACA-G-
1 GA-GTTCATTCCCAGTCTAAGATCAGACCAAAACGAAGGTTGTGGCAGCAGGACCAGCAACAGGA
** * * * * * *
17564743 -C-ACA-C-TG--GGGGGGACCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTCTGACC-GACT
65 TCAACAGCATGCAGAAGGGACAGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGACCTG-CT
* * * ** *
17564801 GAGCGCCCGCATTCTCGTTTCGTGGGTTAACTTAGGCATACA
129 CAGCGCTCGAACACTCGTTTCGTGGGTTGACTTAGGCATACA
17564843 GAGTTCA-TCCCTAGTCTAAG
1 GAGTTCATTCCC-AGTCTAAG
17564863 CATACGGAGT
Statistics
Matches: 279, Mismatches: 53, Indels: 45
0.74 0.14 0.12
Matches are distributed among these distances:
158 61 0.22
159 31 0.11
160 2 0.01
161 2 0.01
162 1 0.00
163 3 0.01
164 1 0.00
166 1 0.00
169 9 0.03
170 103 0.37
171 65 0.23
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (170 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAAAACGAAGGTTGTGGCAGCAGGACCAGCAACAGGAT
CAACAGCATGCAGAAGGGACAGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGACCTGCTCA
GCGCTCGAACACTCGTTTCGTGGGTTGACTTAGGCATACA
Found at i:17564865 original size:26 final size:26
Alignment explanation
Indices: 17564836--17564888 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17564826 GTTAACTTAG
17564836 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
17564862 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17564888 G
1 G
17564889 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17565699 original size:995 final size:993
Alignment explanation
Indices: 17563768--17565884 Score: 2814
Period size: 995 Copynumber: 2.1 Consensus size: 993
17563758 CCACTCGTTC
** * * ** * *
17563768 GATCCCCGGCTTACGCATCCTGCCCACTCTGGTCGACTGAGCGTCCGCACGCTAATTTCGTGGGT
1 GATCCCCGGCTTGTGCATTCTG-CCTCTCTGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGT
* * * * * *
17563833 TGACTTAGGCATATGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCACTGTCTAAGATCG
65 TAACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* *
17563898 GACCGGACCGAGGGTTGCGATAGTAGGATCAACAGTACGTAGGGGGGACCGGGTCAATCCCTGGC
130 GACCGGACCGAGGGTTGCGATAGTAGGATCAACAGCACGTAGGGGGGACCGGGTCAATCCCTGAC
*
17563963 TTGCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
195 TTGCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* ** * *
17564028 TAGACTGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCAGGTCGATCCTCGGCTT
260 CAGACTGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGAGGATCAGGTCGATCCCCGGCTT
* * ** * *
17564093 GCACATTATGCCTCTTCGGCTGGCTCAGTGCCAGCACGCTCGTTTCGTAGGTTAACTTAGGCATA
325 GCACATTATACCTCTCCGGCTGGCTCAGCACCAGCACGCTCATTTCATAGGTTAACTTAGGCATA
* ** **
17564158 CGGAGTTCATTCTAGTCTAAGAATCGAGCCAGACTGAGGTTACGACAGCAGGATCGACAGCACGT
390 CGGAGTTCATTCTAATCTAAGAATCGAGCCAGACCCAGGTTACGACAGCAGGATCGACAGCACAC
* * * ** *
17564223 AGAGGGGGATCGGGCCGGATCCCGGTTTGCGCATTCTGCCTCTCCGGGCGGTTGAGTGCCCGTAC
455 AGAGGCGGATCGGGCCGGATCCCGGCTTGCGCATTCTGCCTCTCCGGGCAGTTGAACGCCCATAC
* * * * *
17564288 GCTCGTTTCGTGGGTTGGCTTAGGCGTACAGAGTTCATTCAATATCTAAGCATATGGAGTTCATT
520 GCTCGTTTCATGAGTCGGCTTAGGCATACAGAGTTCATTCAATATCTAAGCATATGAAGTTCATT
*
17564353 CCCAGTCTAGGATAAGACCAAACTGAGGGTTACGACAGCAGGACCAGCAACAGGATCAACAGCAT
585 CCCAGTCTAGGATAAGACCAAACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCAACAGCAT
* * * *
17564418 GCAGGAGGGACAGGGCTGATCCTCAGCTTGCGCATTCTGCCTCTCTGGCCTGCTGAGCGCTCGTA
650 GCAGGA-GGACAGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCTGCTGAGCACTCGCA
* * * *
17564483 CGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCTAGCCAAATCA
714 CGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGCCAAATCA
** * * *
17564548 AGGGTTGTGGCAGCAGGACCGGTAGTGGGATCAACAGCATGCAGAAGGGGACTGGGCTGATCCCC
779 AGGGTTGTGGCAGCAGGACCGACAGTGGGATCAACAGCACGCAGAAGGGGACCGCGCTGATCCCC
* *
17564613 GGCTTGGGCATTATGCCTCTCCGATCGACTCAGTGCCTGAACACTTGTTTCGTGGTTGACTTAGG
844 AGCTTGGGCATTATGCCTCTCCGATCAACTCAGTGCCTGAACACTTGTTTCGTGGTTGACTTAGG
* * * *
17564678 CATACGATGTTCATTCCCAGTCTAAGATCAGACCAAAACGAAGGTTGTGGTAGTAGGAACGACAG
909 CATACGATGTTCATTCCCAGTCTAAGATCAGACCAAAACGAAGGTTGCGGCAGCAAGAACGACAG
17564743 CACACTGGGGGGGACCGGGTT
974 CACACT-GGGGGGACCGGGTT
** *
17564764 GATCCCCGGCTTGTGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCATTCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
*
17564829 AACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
66 AACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * ** *
17564894 ACCGGACCGAGGGTTGTGGTAGTAGGATCGCCAGCACGTAGGGGGGATCGGGTCAAT-CCTCGAC
131 ACCGGACCGAGGGTTGCGATAGTAGGATCAACAGCACGTAGGGGGGACCGGGTCAATCCCT-GAC
* * * *
17564958 TTGTGCGCGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
195 TTGCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * *
17565023 CGGA-TCGAGGGTTGTGGTAACGGGACTGACAGCACGTAGAGGAGGATC-GGGCTGATCCCCGGC
260 CAGACT-GAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGAGGATCAGGTC-GATCCCCGGC
* * * * *
17565086 TTGCGCATTTTACCTCTCCGG-TCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGC
323 TTGCACATTATACCTCTCCGGCT-GGCTCAGCACCAGCACGCTCATTTCATAGGTTAACTTAGGC
* * * * *
17565150 ATACGGAGTTCATTCTCAATCTAAGATTGGA-CCGGACCCAGGGTTGCGATAGCAGGATCGACAG
387 ATACGGAGTTCATTCT-AATCTAAGAATCGAGCCAGACCCA-GGTTACGACAGCAGGATCGACAG
* * * * * *
17565214 TACACAGTGGCGGATCGGGTCGTATCCCGGCTTGCGCATTTTGCCTCTCCGGTCAGTTGAACGCC
450 CACACAGAGGCGGATCGGGCCGGATCCCGGCTTGCGCATTCTGCCTCTCCGGGCAGTTGAACGCC
* * *
17565279 CATACGCTTGTTTCATGAGTCGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCATATGAAGT
515 CATACGCTCGTTTCATGAGTCGGCTTAGGCATACAGAGTTCATTCAATATCTAAGCATATGAAGT
* * ** * *
17565344 TCATTCCCAGTCTAGGAT-CGAACCAAACCGAGGGTTGCGGTAGTAGGACCAGCAACAGGATCGA
580 TCATTCCCAGTCTAGGATAAG-ACCAAACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCAA
* *
17565408 CAGCATGCAAGGCA-GACAGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCTGTTGAGC
644 CAGCATGC-AGG-AGGACAGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCTGCTGAGC
*
17565472 ACTCGCACGCTCATTTCATGGGTTAGTTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGC
707 ACTCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGC
* * * *
17565537 CGAATCGAGGGTTGTGGCAGCAGGATCGACAGT-GGATCCACAGCACGCA-AAGGGGGACCGCGC
772 CAAATCAAGGGTTGTGGCAGCAGGACCGACAGTGGGATCAACAGCACGCAGAA-GGGGACCGCGC
* * **
17565600 TGATCCCCAGCTTGGGCATTATGCCTCTTCGGTCAACTCAGTGCCTGAATGCTTGTTTCGTGGTT
836 TGATCCCCAGCTTGGGCATTATGCCTCTCCGATCAACTCAGTGCCTGAACACTTGTTTCGTGGTT
* * ** * *
17565665 GACTTAGGCATACGATGTTTATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAG
901 GACTTAGGCATACGATGTTCATTCCCAGTCTAAGATCAGACCAAAACGAAGGTTGCGGCAGCAAG
* **
17565730 ATCGACAGCATGCTGGGGGGACCGGGTT
966 AACGACAGCACACTGGGGGGACCGGGTT
* ** * * *
17565758 GATGCCCAACTTGTGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGTACGCTCATTTAGTGGGTT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
* * *
17565823 AGCTTAGGCATACGGAGTTAATTCC-ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
66 AACTTAGGCATACGGAGTTCATCCCTA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
17565885 TGGACCAGAT
Statistics
Matches: 970, Mismatches: 140, Indels: 24
0.86 0.12 0.02
Matches are distributed among these distances:
993 1 0.00
994 136 0.14
995 475 0.49
996 354 0.36
997 3 0.00
998 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (993 bp):
GATCCCCGGCTTGTGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
AACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGCGATAGTAGGATCAACAGCACGTAGGGGGGACCGGGTCAATCCCTGACT
TGCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
AGACTGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGAGGATCAGGTCGATCCCCGGCTTG
CACATTATACCTCTCCGGCTGGCTCAGCACCAGCACGCTCATTTCATAGGTTAACTTAGGCATAC
GGAGTTCATTCTAATCTAAGAATCGAGCCAGACCCAGGTTACGACAGCAGGATCGACAGCACACA
GAGGCGGATCGGGCCGGATCCCGGCTTGCGCATTCTGCCTCTCCGGGCAGTTGAACGCCCATACG
CTCGTTTCATGAGTCGGCTTAGGCATACAGAGTTCATTCAATATCTAAGCATATGAAGTTCATTC
CCAGTCTAGGATAAGACCAAACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCAACAGCATG
CAGGAGGACAGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCTGCTGAGCACTCGCACG
CTCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGCCAAATCAAG
GGTTGTGGCAGCAGGACCGACAGTGGGATCAACAGCACGCAGAAGGGGACCGCGCTGATCCCCAG
CTTGGGCATTATGCCTCTCCGATCAACTCAGTGCCTGAACACTTGTTTCGTGGTTGACTTAGGCA
TACGATGTTCATTCCCAGTCTAAGATCAGACCAAAACGAAGGTTGCGGCAGCAAGAACGACAGCA
CACTGGGGGGACCGGGTT
Found at i:17565859 original size:26 final size:26
Alignment explanation
Indices: 17565830--17565882 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17565820 GTTAGCTTAG
17565830 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
17565856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17565882 G
1 G
17565883 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17566066 original size:26 final size:26
Alignment explanation
Indices: 17566037--17566089 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17566027 GTTGACTTAG
**
17566037 GCATACGGTGTACATCCCCAGTCTAA
1 GCATACGAAGTACATCCCCAGTCTAA
* *
17566063 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTACATCCCCAGTCTAA
17566089 G
1 G
17566090 ATTGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTACATCCCCAGTCTAA
Found at i:17566118 original size:207 final size:208
Alignment explanation
Indices: 17565722--17566124 Score: 548
Period size: 207 Copynumber: 1.9 Consensus size: 208
17565712 GAGGGTTGCG
* * * * * *
17565722 GCAGCAAGATCGACAGCATGCTGGGGGGACCGGGTTGATGCCCAACTTGTGCATTCTGCCTCTCT
1 GCAGCAAGATCGACAGCACGCTAGGGGGACCGAGTTGATGCCCAACTTGCGCATTCTACCTCTCC
* * *
17565787 GACCGGCTGAGCGCCCGTACGCTCATTTAGTGGGTTAGCTTAGGCATACGGAGTTAATTCCATGT
66 GACCGACTGAGCACCCGTACGCTCATTTAGTGGGTTAGCTTAGGCATACGGAGTTAATCCCATGT
* * * *
17565852 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCAAGGGTTACGGCAGTAGGATC
131 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAAGGTTACGGCAGTAGGATC
17565917 GACAATAGGACTA
196 GACAATAGGACTA
* *
17565930 GCAGCAGGATCGACAGCACGC-AGGGGGACCGAGTTGAT-CCCTGACTTGCGCATTCTACCTCTC
1 GCAGCAAGATCGACAGCACGCTAGGGGGACCGAGTTGATGCCC-AACTTGCGCATTCTACCTCTC
* *
17565993 CGATCGACTGAGCACCCGTACGCTCATTTTA-TGGGTT-GACTTAGGCATACGGTG-TACATCCC
65 CGACCGACTGAGCACCCGTACGCTCA-TTTAGTGGGTTAG-CTTAGGCATACGGAGTTA-AT-CC
**
17566055 CA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAAGGTTGTGGCAGTA
126 CATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAAGGTTACGGCAGTA
17566119 GGATCG
191 GGATCG
17566125 GTAGCACGTA
Statistics
Matches: 171, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
206 6 0.04
207 139 0.81
208 26 0.15
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (208 bp):
GCAGCAAGATCGACAGCACGCTAGGGGGACCGAGTTGATGCCCAACTTGCGCATTCTACCTCTCC
GACCGACTGAGCACCCGTACGCTCATTTAGTGGGTTAGCTTAGGCATACGGAGTTAATCCCATGT
CTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAAGGTTACGGCAGTAGGATC
GACAATAGGACTA
Found at i:17567416 original size:159 final size:160
Alignment explanation
Indices: 17567155--17567603 Score: 464
Period size: 159 Copynumber: 2.8 Consensus size: 160
17567145 TTACGACAGT
* * * * * *
17567155 AGGATCGACAGCACGTAG-GGGGGATAGGGCCGATCCCTGGCTTGTGCACTCTGCCTCTCCGACC
1 AGGACCGACAGCACGTAGAGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* * * * * * *
17567219 GACTAAGTGCCCGTACGC-CTATTTCATGGTTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTA
66 GGCTAAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTA
*
17567283 AGCCCCAG-CCAG-ATCGAGGGTTGTGGCAGC
130 AGCACCAGACCAGAAT-GAGGGTTGTGGCAGC
* * * *
17567313 TGGGCCGACAGCACGTAGAGGGGGATCGAACCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
1 AGGACCGACAGCACGTAGAGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* * * *
17567378 GGCTCAGCGCCTGCAGGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCC-TAGTCTA
66 GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCAT-GTCTA
* * *
17567442 AG-ATCAGATCGGAATGAGGGTTGTGGCAGC
130 AGCACCAGACCAGAATGAGGGTTGTGGCAGC
** * * * * *
17567472 AGGATTGATAGCACGTA-AGGGGGATCAGGTCAG-TCCTCGGCTTACGCATTCTGCCTCTCCGAC
1 AGGACCGACAGCACGTAGAGGGGGATC-GGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
* * * * * *
17567535 CGGCTGAGCACCCGCATGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTA
65 CGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTA
17567600 AGCA
130 AGCA
17567604 TATGGAGTTC
Statistics
Matches: 239, Mismatches: 44, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
158 112 0.47
159 124 0.52
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (160 bp):
AGGACCGACAGCACGTAGAGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAA
GCACCAGACCAGAATGAGGGTTGTGGCAGC
Found at i:17567624 original size:26 final size:26
Alignment explanation
Indices: 17567575--17567627 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17567565 GTTGGCTTAG
*
17567575 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
17567601 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
17567627 G
1 G
17567628 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17568492 original size:26 final size:26
Alignment explanation
Indices: 17568440--17568492 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17568430 GTTGGCTTAG
*
17568440 GCATACAGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
17568466 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
17568492 G
1 G
17568493 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17569216 original size:184 final size:183
Alignment explanation
Indices: 17568793--17569203 Score: 470
Period size: 184 Copynumber: 2.2 Consensus size: 183
17568783 ACGGAGCACC
* * * *
17568793 CGCACGCTCATTTCGTGGGTTGACTTAGGCTTACAAAGTTCCTTCCATTTCTAAGCCCCAGCCAG
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATTTCTAAGCCCCAGCCAG
* * * *
17568858 ACCGAGGGTTATGGCAGAAGGATCGACAGCGAGATCGACAGCACGTAGAGGGGGATCGAGCTGAT
66 ACCGAGGGTTATGGCAGAAGGACCGACAGCAAGATCGACAGCACGTAGAGGAGGACCGAGCTGAT
** * * * ** *
17568923 CCCCGGCTTACGTGTTATGCCTGTTCGGCTGACCTCTCCGGTCGGCTGAGCGCT
131 CCCCAACTTA-GTGTTATGCCTCTCCGGCAGACCTCTCCGACCGACTGAGCGCT
* * * *
17568977 CGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATTTCTAAGCCCTAGCCAG
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATTTCTAAGCCCCAGCCAG
* * * * *
17569042 ATCGAGGGTTGTGGCAGCAGGACCGATAGCAAGATCGACAGCATGTAGAGGAGGACC-AGGCTGA
66 ACCGAGGGTTATGGCAGAAGGACCGACAGCAAGATCGACAGCACGTAGAGGAGGACCGA-GCTGA
* * * *
17569106 TCCTCAACTT-GTGCATTGTGTCTCTCCGGTCAG-CCTCTCCGACCGATTGAGCGC-
130 TCCCCAACTTAGTG--TTATGCCTCTCCGG-CAGACCTCTCCGACCGACTGAGCGCT
*
17569160 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCAT
1 C-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
17569204 CCCCAGTCTA
Statistics
Matches: 189, Mismatches: 33, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
182 3 0.02
183 2 0.01
184 182 0.96
185 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (183 bp):
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATTTCTAAGCCCCAGCCAG
ACCGAGGGTTATGGCAGAAGGACCGACAGCAAGATCGACAGCACGTAGAGGAGGACCGAGCTGAT
CCCCAACTTAGTGTTATGCCTCTCCGGCAGACCTCTCCGACCGACTGAGCGCT
Found at i:17569685 original size:26 final size:26
Alignment explanation
Indices: 17569655--17569707 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17569645 GTTGTCTTAG
17569655 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
17569681 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
17569707 G
1 G
17569708 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:17569886 original size:196 final size:196
Alignment explanation
Indices: 17569547--17569907 Score: 521
Period size: 196 Copynumber: 1.8 Consensus size: 196
17569537 GAGAGTTGCG
* * *
17569547 GTAGTAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCTAGCTTGCACATTCTGCCTCTCC
1 GTAGCAGGATCGACAGCACGAAGGGGGGACCGAGCCGATCCCTAGCTTACACATTCTGCCTCTCC
* * * * * *
17569612 GACCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGTCTTAGGCATACGGAGTTCATTCCATGT
66 GACCAGCTGAGCACCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATCCCATGT
17569677 CTAAGCATACGGAGTTCATTCAC-AGTCTAAGATCAGACCGGATCTAGGCTTGCGGCAGCAGGAC
131 CTAAGCATACGGAGTTCATTC-CTAGTCTAAGATCAGACCGGATCTAGGCTTGCGGCAGCAGGAC
17569741 CA
195 CA
* ** *
17569743 GTAGCAGGATCGACAGCACGAAGGGGGGACCGGGCCGATCCCT-GACTTACGTATTTTGCCTCTC
1 GTAGCAGGATCGACAGCACGAAGGGGGGACCGAGCCGATCCCTAG-CTTACACATTCTGCCTCTC
* * *
17569807 TGGCCAGTTGAGCACCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATCCC-TA
65 CGACCAGCTGAGCACCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATCCCAT-
*
17569871 GTCTAAGCATACGGAGTTCATTCCTAGTTTAAGATCA
129 GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
17569908 AACCAGGTCA
Statistics
Matches: 145, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
195 3 0.02
196 142 0.98
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (196 bp):
GTAGCAGGATCGACAGCACGAAGGGGGGACCGAGCCGATCCCTAGCTTACACATTCTGCCTCTCC
GACCAGCTGAGCACCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATCCCATGT
CTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCTAGGCTTGCGGCAGCAGGACC
A
Found at i:17569887 original size:26 final size:26
Alignment explanation
Indices: 17569851--17569903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17569841 GTTGACTTAG
17569851 GCATACGGAGTTAATCCCTAGTCTAA
1 GCATACGGAGTTAATCCCTAGTCTAA
* * *
17569877 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTAATCCCTAGTCTAA
17569903 G
1 G
17569904 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCTAGTCTAA
Found at i:17571866 original size:26 final size:26
Alignment explanation
Indices: 17571816--17571867 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17571806 GTTTGCTTAG
*
17571816 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17571842 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17571868 CATCAGATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17572061 original size:26 final size:26
Alignment explanation
Indices: 17572025--17572077 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17572015 GTTGACTTAG
*
17572025 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17572051 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17572077 G
1 G
17572078 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17572334 original size:158 final size:158
Alignment explanation
Indices: 17572090--17572391 Score: 394
Period size: 158 Copynumber: 1.9 Consensus size: 158
17572080 TGAACCAGAT
*
17572090 CGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGACCGAGCCGATCCTTGGCTTGCGCAT
1 CGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCAT
* * * * *
17572155 TCTGCCTCTTTGACCGGCTGAGTGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCATCTTAGACCGACTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGT
17572220 T-ATTCCATGTCTACGCCCCAGCTGAAA
131 TCATTCCATGTCTACGCCCCAGCTGAAA
* * * * * *
17572247 CGAGGGTTGTGGCAGTAGGA-CAGGTAGCACGCAGAGGGGGACTGGGTCGATCCCTGGCTTGTGC
1 CGAGGGTTGCGGCAGCAGGATC-GGTAGCACGCAG-GGGGGACCGAGCCGATCCCTGGCTTGCGC
* * ** * *
17572311 ATTCTGTATCTCTAG-CCGACTGAGCGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGG
64 ATTCTGCATCT-TAGACCGACTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATACGG
17572375 AGTTCATTCCATGTCTA
128 AGTTCATTCCATGTCTA
17572392 AGCATACGGA
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
156 1 0.01
157 30 0.24
158 78 0.63
159 14 0.11
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCAT
TCTGCATCTTAGACCGACTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTACGCCCCAGCTGAAA
Found at i:17572397 original size:26 final size:26
Alignment explanation
Indices: 17572367--17572419 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17572357 GTTGGCTTAG
17572367 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17572393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17572419 G
1 G
17572420 AGTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17573203 original size:26 final size:26
Alignment explanation
Indices: 17573173--17573225 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17573163 GTTGGCTTAG
17573173 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17573199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17573225 G
1 G
17573226 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17574260 original size:26 final size:26
Alignment explanation
Indices: 17574230--17574282 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17574220 GTTGACTTAG
17574230 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17574256 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17574282 G
1 G
17574283 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17574742 original size:160 final size:158
Alignment explanation
Indices: 17574256--17574759 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 158
17574246 CCCAGTCTAA
* *
17574256 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCGAC
* * * * * * *
17574320 AGCAAGCA-GGAGGGACCGGGTCGATCCCCGGGTTGTGCATTCTGCCTCTTCGGCCGGTTGAGTG
65 AGCACGCAGGGAGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCG
* *
17574384 CCCGCTCGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
17574414 GCATA-GTGAGTTCATTCCATGTCTAAGCCCCAG-TCGAACCAAGGGTTGTGGCAGCAGGACCGA
1 GCATACG-GAGTTCATTCCATGTCTAAG-ATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCGA
* * * * * * *
17574477 TAGCACGCAGAGG-GGGATCGGGCCAATCCCTGACTTGCGCATTCTACCTCTCCGGCCAGCTGAT
64 CAGCACGCAG-GGAGGGATCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAG
* * **
17574541 CGCCTGCACGCTCGTTTCGTCGGTTAACTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **
17574573 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCAATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCGAC
* * ** * * *
17574637 ATCACGCAGCGGATGGATCGACCCGGTCCTCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGC
65 AGCACGCAG-GGAGGGATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGC
* **
17574702 ACCCGCACGCTCGTTTTATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17574733 GCGTACGGAGTTAATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17574760 CATACAGAGT
Statistics
Matches: 272, Mismatches: 62, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 59 0.22
159 119 0.44
160 89 0.33
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGAGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17574986 original size:197 final size:196
Alignment explanation
Indices: 17574663--17575349 Score: 589
Period size: 197 Copynumber: 3.5 Consensus size: 196
17574653 ATCGACCCGG
* * *
17574663 TCCTCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGCACCCGCACGCTCGTTTTATGGGTTGG
1 TCCTCAGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGG
* * * *
17574728 CTTAGGCGTACGGAGTTAATTCCATGTCTAAGCATACAGAGTTCATTCCCACTCTAAGATCGGAT
66 CTTAGGCATACGGAGTTAATTACATGTCTAAGCATACAGAGTTCATTCCCACTCTAAGATCGAAC
** * * *
17574793 TGGACAGAGGCTTGCGGCAGCAGGACCAGCAGCAGGATCGGTAGCACATAGGGAGGGATCGAGTC
131 CAGACAGAGGCATGCGACAGCAGGACCAGCAGCAGGATCGGCAGCACATAGGG-GGGATCGAGTC
17574858 GA
195 GA
* * * * * *
17574860 TCCTCAGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCCTGTACGCTCGTTTCATGGGTTGG
1 TCCTCAGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGG
* * *
17574925 CTTAGGCATACGGAGTTCATTACATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
66 CTTAGGCATACGGAGTTAATTACATGTCTAAGCATACAGAGTTCATTCCCACTCTAAGATCGAAC
* * * *
17574990 CAGACCGAGGGATGCGACAGCAGGACCAGCAGCAGGATCGGCAGCACGTAGGGGGGATCGGGTCG
131 CAGACAGAGGCATGCGACAGCAGGACCAGCAGCAGGATCGGCAGCACATAGGGGGGATCGAGTCG
17575055 A
196 A
* * * *
17575056 TCCCCAGCTTACACATTTTGCCTCTCTGGCCAACCTCTCCGGCTGACTGAGCACCCGCACGCTCG
1 TCCTCAGCTTACGCATTCTG-C-CTCT--CC-A----GCC-G--G-CTGAGCACCCGCACGCTCG
* * * * * ** *
17575121 TTTCGTGGGTTGACTTAGCCATACAGAGTTTATCCCCA-GTCTAAGCATACGGAGTTCATTCCCA
53 TTTCATGGGTTGGCTTAGGCATACGGAGTTAAT-TACATGTCTAAGCATACAGAGTTCATTCCCA
* * ** **
17575185 GTCTAAGATTGAA-C---C--A-G-AT-CG--AG--GGTTGCAGCAGCAGGATCGATAGCACATA
117 CTCTAAGATCGAACCAGACAGAGGCATGCGACAGCAGG-ACCAGCAGCAGGATCGGCAGCACATA
* *
17575237 GGGGGGACCGAGCCGA
181 GGGGGGATCGAGTCGA
* * ** * * **
17575253 TCC-CTATCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACAC-CTGTTTCACAGGTT
1 TCCTC-AGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTC-GTTTCATGGGTT
* *
17575316 GGCTTAGGCAT-CGGGAGTTCATTCCATGTCTAAG
64 GGCTTAGGCATAC-GGAGTTAATTACATGTCTAAG
17575350 ACCTACGCAG
Statistics
Matches: 403, Mismatches: 68, Indels: 51
0.77 0.13 0.10
Matches are distributed among these distances:
183 5 0.01
184 46 0.11
185 1 0.00
187 1 0.00
188 2 0.00
193 1 0.00
195 4 0.01
196 33 0.08
197 208 0.52
198 6 0.01
200 3 0.01
201 2 0.00
202 1 0.00
203 1 0.00
205 2 0.00
206 1 0.00
208 2 0.00
209 82 0.20
210 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (196 bp):
TCCTCAGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTAATTACATGTCTAAGCATACAGAGTTCATTCCCACTCTAAGATCGAAC
CAGACAGAGGCATGCGACAGCAGGACCAGCAGCAGGATCGGCAGCACATAGGGGGGATCGAGTCG
A
Found at i:17575169 original size:26 final size:26
Alignment explanation
Indices: 17575140--17575191 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17575130 TTGACTTAGC
*
17575140 CATACAGAGTTTATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* *
17575166 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
17575192 ATTGAACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:17575519 original size:26 final size:26
Alignment explanation
Indices: 17575483--17575561 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
17575473 GTTGGCTTAG
17575483 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17575509 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
17575535 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
17575561 G
1 G
17575562 AGTTTGACCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17576242 original size:26 final size:26
Alignment explanation
Indices: 17576206--17576255 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17576196 GTTGACTTAG
*
17576206 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17576232 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
17576256 GAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17576533 original size:159 final size:159
Alignment explanation
Indices: 17576266--17577746 Score: 748
Period size: 159 Copynumber: 9.1 Consensus size: 159
17576256 GAGATCGAAC
* * * * * * **
17576266 CGGACCGAAGGTTGCGACAGCAGGATCGGCAGCACGCA-AGGGGGACCGGGCTGATCCCTGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCCGATCCCCAGCTT
* * * * **** * * * * * *
17576330 ACACATTCTACCTCTCCGGTTAGCTGAGCGCCCGCACGCCCGTTTCGTGCGTTGGCTTAGGGATA
66 GCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
*
17576395 GGGAGTTCATTCCATGTCTAAGCCCCAGT
131 CGGAGTTCATTCCATGTCTAAGCCCCAGT
* * *
17576424 CGGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGGGGGACTGGGCCAATCCCCAGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCCGATCCCCAGCTT
* * * *
17576489 GCGCATTATGCCTCTCCGACCGGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATA
66 GCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
** * ** *
17576554 CCAAGTTCATTCCCA-ATCTAAG-ATCAGAC
131 CGGAGTTCATT-CCATGTCTAAGCCCCAG-T
* * ** * * ** *
17576583 CAGACCGAGGATTGTAACAGCAGGATCGACAGCACGTA-AGGGGGA-TCAGATCGGTCCCC-GAC
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACT-GGGCCGATCCCCAG-C
** * * * * * *
17576645 TTGCTTATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAAGCA
64 TTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCA
* * **
17576710 TACGGAGTTTATTCCATGCCTAAGCATACAGAGTT
129 TACGGAGTTCATTCCATGTCTAAGC---CCCAG-T
*** * ** * * * * *
17576745 CATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGCAGCAGTAGGACCAGCATCACGTAGGGGG
1 CGGACCGAGGGT-TG--TGG--C-AGC--A-GGAT-C-G-A-CA-G--CA-C-GCA-G-A-GGGG
* * * * * * * * * * *
17576810 GACTGGACTGAT-CCCAACTTGTGCATTTTGCCTTTACGGCCGACTGAGCGCCCGCACGCCCATT
45 GACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATT
* * * *
17576874 TCATGGGTTGGCTTGGGCATAAGGAGTTCATTTCATGTCTAAGCCCCAGC
110 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
** * ** * *
17576924 CGGA-CGAAGGGTTGTGGCAGTGGGA-CTGGCAGCACGCAGAGAAGGACCGGGTCGATCCCC-GA
1 CGGACCG-AGGGTTGTGGCAGCAGGATC-GACAGCACGCAGAGGGGGACTGGGCCGATCCCCAG-
* * * * *
17576986 CTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGC
63 CTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* **
17577051 ATACAGAGTTCATTCCCA-GTCTAAG-ATCAGAT
128 ATACGGAGTTCATT-CCATGTCTAAGCCCCAG-T
* * * * * *
17577083 CGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG-GGGTGGACTGGGCCAATCTCCGGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGG-GGACTGGGCCGATCCCCAGCT
* * * * * * * * *
17577147 TGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTGCACACCCATTTCGTGGGTTGGCTTAGGCGT
65 TGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
* *
17577212 AGGGAGTTTATTCCATGTCTAAGCCCCAG-
130 ACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * *
17577241 CTAGACCGTGGGTTGTGGCAGCAGGACCGGCAGCACGTAGAGGGGGACCGGGCCGAT-CCCAGGC
1 C-GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCCGATCCCCA-GC
* * * * * * *
17577305 TTGCGTATTATGCCTCTCTGGCTGGC-CTAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAGGC
64 TTGCGCATTATGCCTCTCCGACCGGCTC-AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* **
17577369 ATAAGGAGTTCATTCCCA-GTCTAAG-ATCAG-
128 ATACGGAGTTCATT-CCATGTCTAAGCCCCAGT
** ** * * * * * **
17577399 CTGGACCGAGGGTTACGATAGTAGGATCAACAGCACACAGGGGGGGA-TCGGGTC-AGTCCCTGG
1 C-GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACT-GGGCCGA-TCCCCAG
* * ** * * *
17577462 CTTGCGCATTCTGCCTCTTCGATTGGCTAAGCGCCCGCACGCTCATTTCGTTGGTTGGCTTAGGC
63 CTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* ****
17577527 ATACGGAGTTCATTCCCA-ATCTAAG-ATTGGAT
128 ATACGGAGTTCATT-CCATGTCTAAGCCCCAG-T
* * *
17577559 CGGACCGAGGGTTATGGCAGCAGGACTAGCAACTGGATCGACAGCACGCAG-GGGTGGACCGAGC
1 CGGACCGAGGG-T-T----G-TGG-C-AGC-A--GGATCGACAGCACGCAGAGGG-GGACTGGGC
* * * * * * * *
17577623 TGAT-CCCTGACTTACGCATTCTGCCTCTCCGGCTGGC-CAAGCACTCGCACGCTCATTTCATGG
53 CGATCCCCAG-CTTGCGCATTATGCCTCTCCGACCGGCTC-AGCGCCCGCACGCTCATTTCATGG
17577686 GTTGGCTTAGGCATACGG-GTTCATTCCATGTCTAAGCCCCAGT
116 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
*
17577729 CGGATCGAGGGTTGTGGC
1 CGGACCGAGGGTTGTGGC
17577747 TACAGGACCG
Statistics
Matches: 981, Mismatches: 267, Indels: 146
0.70 0.19 0.10
Matches are distributed among these distances:
157 6 0.01
158 259 0.26
159 427 0.44
160 21 0.02
161 3 0.00
162 11 0.01
163 5 0.01
164 1 0.00
165 2 0.00
166 2 0.00
167 1 0.00
168 7 0.01
169 5 0.01
170 33 0.03
171 86 0.09
172 2 0.00
173 2 0.00
174 2 0.00
175 1 0.00
176 4 0.00
178 4 0.00
179 5 0.01
180 4 0.00
183 77 0.08
184 10 0.01
185 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCCGATCCCCAGCTT
GCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCCAGT
Found at i:17577107 original size:500 final size:502
Alignment explanation
Indices: 17576180--17577235 Score: 1270
Period size: 500 Copynumber: 2.1 Consensus size: 502
17576170 TGAGAGTCCA
* * *
17576180 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTT
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTAT-TCCATGTCTAAGCATACAGAGTT
* * * *
17576244 CATTCCCAGTCTGAGATCGAACCGGACCGAAGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGG
65 CATTCCCAGTCTAAGATCGAACCGAACCGAAGGTTGCGACAGCAGGACCAGCAGCACGCAAGGGG
* ** * ** *
17576309 GACCGGGCTGATCCCTGGCTTACACATTCTACCTCTCCGGTTAGCTGAGCGCCCGCACGCCCGTT
130 GACCGGACTGATCCCTAACTTACACATTCTACCTCTACGGCGAGCTGAGCGCCCGCACGCCCATT
* * *
17576374 TCGTGCGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGT
195 TCATGCGTTGGCTTAGGGATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
* ** *
17576439 GGCAGCGGGATCGACAGCATGCAGAGGGGGACTGGGCCAATCCCCAGCTTGCGCATTATGCCTCT
260 GGCAGCGGGATCGACAGCACGCAGAGAAGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCT
17576504 CCGACCGGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACCAAGTTCATTCCCA
325 CCGACCGGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACCAAGTTCATTCCCA
*
17576569 ATCTAAGATCAGACCAGACCGAGGATTGTAACAGCAGGATCGACAGCACGTAAGGG-GGA-TCAG
390 ATCTAAGATCAGACCAGACCGAGGATTGCAACAGCAGGATCGACAGCACGTAAGGGTGGACT-AG
* ** ** **
17576632 ATCGGTCCCCGACTTGCTTATTCTGCCTCTCCGATCGGTTGAGCACCCG
454 ACCAATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCG
* * *
17576681 CACGCTCATTTCATGGGTTGGCTTAAGCATACGGAGTTTATTCCATGCCTAAGCATACAGAGTTC
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTC
* * * * * * * *
17576746 ATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGC-AGCAGTAGGACCAGCATCACGTAGGGGG
66 ATTCCCAGTCTAAGATCGAACCGAACCGAAGGTTGCGA-CAGCAGGACCAGCAGCACGCAAGGGG
* *** * * *
17576810 GACTGGACTGATCCC-AACTTGTGCATTTTGCCTTTACGGCCGA-CTGAGCGCCCGCACGCCCAT
130 GACCGGACTGATCCCTAACTTACACATTCTACCTCTACGG-CGAGCTGAGCGCCCGCACGCCCAT
* *
17576873 TTCATGGGTTGGCTT-GGGCATAAGGAGTTCATTTCATGTCTAAGCCCCAGCCGGA-CGAAGGGT
194 TTCATGCGTTGGCTTAGGG-ATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG-AGGGT
* * * *
17576936 TGTGGCAGTGGGA-CTGGCAGCACGCAGAGAAGGACCGGGTCGATCCCC-GACTTGCGCATTATG
257 TGTGGCAGCGGGATC-GACAGCACGCAGAGAAGGACCGGGCCAATCCCCAG-CTTGCGCATTATG
* * ** *
17576999 CCTCTCCGACTGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CAGAGTTCA
320 CCTCTCCGACCGGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACCA-AGTTCA
* * * * * ** *
17577063 TTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGTGG
384 TTCCCAATCTAAGATCAGACCAGACCGAGGATTGCAACAGCAGGATCGACAGCACGTAAGGGTGG
* * * * * *
17577128 ACTGGGCCAATCTCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTG
449 ACTAGACCAATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCG
* * * *
17577182 CACACCCATTTCGTGGGTTGGCTTAGGCGTAGGGAGTTTATTCCATGTCTAAGC
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
17577236 CCCAGCTAGA
Statistics
Matches: 466, Mismatches: 79, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
499 9 0.02
500 249 0.53
501 207 0.44
502 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (502 bp):
CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTC
ATTCCCAGTCTAAGATCGAACCGAACCGAAGGTTGCGACAGCAGGACCAGCAGCACGCAAGGGGG
ACCGGACTGATCCCTAACTTACACATTCTACCTCTACGGCGAGCTGAGCGCCCGCACGCCCATTT
CATGCGTTGGCTTAGGGATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTG
GCAGCGGGATCGACAGCACGCAGAGAAGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTC
CGACCGGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACCAAGTTCATTCCCAA
TCTAAGATCAGACCAGACCGAGGATTGCAACAGCAGGATCGACAGCACGTAAGGGTGGACTAGAC
CAATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCG
Found at i:17577317 original size:318 final size:316
Alignment explanation
Indices: 17576733--17577542 Score: 932
Period size: 318 Copynumber: 2.6 Consensus size: 316
17576723 CCATGCCTAA
** * * * *
17576733 GCATACAGAGTTCATTCCCAGTCTAAGATTGGA-CCGAACTGAGGGTTGCAGCAGTAGGACCAGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGAAC-GAGGGTTGCGGCAGTAGGATCAAC
* * ** ** * * * **
17576797 ATCACGTAGGGGGGACTGGACTGATCCCAACTTGTGCATTTTGCCTTTACGGCCGACTGAGCGCC
65 AGCACGTAGGGGGGACTGGGCCAATCCCGGCTTGCGCATTCTGCCTCTACGATCGACTGAGCGCC
* * * *
17576862 CGCACGCCCATTTCATGGGTTGGCTTGGGCATAAGGAGTTCATTTCATGTCTAAGCCCCAGCCGG
130 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
** * * *
17576927 ACGAAGGGTTGTGGCAGTGGGACTGGCAGCACGCAGAGAAGGACCGGGTCGATCCCCGACTTGCG
195 ACGAAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGAAGGACCGGGCCGATCCCAGACTTGCG
*
17576992 CATTATGCCTCTCCGACTGG-CTCAGCG-CCTGCACGCTCGTTTCGTGGGTTGACTTAG
260 CATTATGCCTCTCCGACTGGCCT-AGCGCCCT-CACGCTCGTTTCATGGGTTGACTTAG
* * *
17577049 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTGCGGCAGTAGGATCAACA
*
17577114 GCACGTAGGGGTGGACTGGGCCAATCTCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
66 GCACGTAGGGG-GGACTGGGCCAATC-CCGGCTTGCGCATTCTGCCTCTACGATCGACTGAGCGC
* * * * * *
17577179 CTGCACACCCATTTCGTGGGTTGGCTTAGGCGTAGGGAGTTTATTCCATGTCTAAGCCCCAGCTA
129 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * ** *
17577244 GACCG-TGGGTTGTGGCAGCAGGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCAGGCTTG
194 GA-CGAAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGAAGGACCGGGCCGATCCCAGACTTG
* * *
17577308 CGTATTATGCCTCTCTGGCTGGCCTAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAG
258 CGCATTATGCCTCTCCGACTGGCCTAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAG
* * * **
17577367 GCATA-AGGAGTTCATTCCCAGTCTAAGATCAGCT-GGACCGAGGGTTACGATAGTAGGATCAAC
1 GCATACA-GAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTGCGGCAGTAGGATCAAC
** * * * * * *
17577430 AGCACACAGGGGGGGA-TCGGGTCAGTCCCTGGCTTGCGCATTCTGCCTCTTCGATTGGCTAAGC
65 AGCACGTA-GGGGGGACT-GGGCCAATCCC-GGCTTGCGCATTCTGCCTCTACGATCGACTGAGC
* * *
17577494 GCCCGCACGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCC
127 GCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCC
17577543 CAATCTAAGA
Statistics
Matches: 417, Mismatches: 67, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
316 64 0.15
317 127 0.30
318 219 0.53
319 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTGCGGCAGTAGGATCAACA
GCACGTAGGGGGGACTGGGCCAATCCCGGCTTGCGCATTCTGCCTCTACGATCGACTGAGCGCCC
GCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CGAAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGAAGGACCGGGCCGATCCCAGACTTGCGC
ATTATGCCTCTCCGACTGGCCTAGCGCCCTCACGCTCGTTTCATGGGTTGACTTAG
Found at i:17578257 original size:168 final size:170
Alignment explanation
Indices: 17577905--17578472 Score: 522
Period size: 168 Copynumber: 3.3 Consensus size: 170
17577895 CCATGCCTAA
* ** ** ** * * **
17577905 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATTGGACTGAGGGTTAC-AGTAGTAGGACCAAT
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGA-CAGCAGGACCAGC
* * * * * *
17577969 AGTAGGATCGACAGCACGTAGGGGGGACTGGGCTGA-TCCCTGACTTGCGCATTCTGTCTCTTCG
65 AGCAGGATCGACAGCACGCAGAGGGGACCGGGCTGATTCCC-GACTTGCGCATTCTGCCTCTCCG
* * * * * *
17578033 ACCGGTTGAGCACCCACACGCCCGTTTC-CTAGGTTGGCTTAG
129 GCCGGCTGAGCGCCCGCACGCTCGTTTCGC-GGGTTGGCTTAG
* * *
17578075 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGACAGCAGGACCAGCA
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCAGGACCAGCA
* * *
17578140 -CAGGATCGACAGCACGCA-AGGGGACCGGGCTAATTCGCGACTTGCACATTCTGCCTCTCCGGC
66 GCAGGATCGACAGCACGCAGAGGGGACCGGGCTGATTCCCGACTTGCGCATTCTGCCTCTCCGGC
* *
17578203 CGGGTGAGCGCCCGCATGCTCGTTTCGCGGGTTGGCTTAG
131 CGGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTGGCTTAG
* * * * * *
17578243 GCATACAAAGTTCATT-CCATGTCTAAGACCCA-ACTGGACCAAGGGTTATGGCAGCAGGATCGG
1 GCATACAAAGTTCATTCCCA-GTCTAAGA-TCAGACCGGACCAAGGGTTACGACAGCAGGACCAG
* * * * * * * *
17578306 CAGC-GAGATCGATAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTC
64 CAGCAG-GATCGACAGCACGCAGA-GGGGACCGGGCTGATTCCCGACTTGCGCATTCTGCCTCTC
* * * * * *
17578370 CGGCCGGCTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAT
127 CGGCCGGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTGGCTTAG
* * * *
17578414 GCATACGAAGTTCATTCCCAGCCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGA
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCAGGA
17578473 TCAATAGCAC
Statistics
Matches: 325, Mismatches: 62, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
167 3 0.01
168 116 0.36
169 35 0.11
170 56 0.17
171 112 0.34
172 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (170 bp):
GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCAGGACCAGCA
GCAGGATCGACAGCACGCAGAGGGGACCGGGCTGATTCCCGACTTGCGCATTCTGCCTCTCCGGC
CGGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTGGCTTAG
Found at i:17578456 original size:171 final size:167
Alignment explanation
Indices: 17578055--17578475 Score: 452
Period size: 171 Copynumber: 2.5 Consensus size: 167
17578045 CCCACACGCC
* * * *
17578055 CGTTTCCTAGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGG
* * * * *
17578120 TTACGACAGCAGGACCAGCACAGGATCGACAGCACGCAAGGGGACCGGGCTAATTCGCGACTTGC
65 TTACGACAGCAGGATCAGCACAGGATCGACAGCACGCAAGGGGACCGAGCCAATCCCCGACTTGC
* * * * **
17578185 ACATTCTGCCTCTCCGGCCGGGTGAGCGCCCGCATGCT
130 ACATTATGCCTCTCCGGCCGGCTCAACGCCCGCACACT
* * *
17578223 CGTTTCGCGGGTTGGCTTAGGCATACAAAGTTCATT-CCATGTCTAAGACCCA-ACTGGACCAAG
1 CGTTTCGTGGGTTGGCTTAGGCATAC-AAGTTCATTCCCA-GTCTAAGA-TCAGACCGGACCAAG
* * * * * *
17578286 GGTTATGGCAGCAGGATCGGCAGC-GAGATCGATAGCATGCAGAGGGGGACCGAGCCGATCCCCG
63 GGTTACGACAGCAGGATCAGCA-CAG-GATCGACAGCACGCA-A-GGGGACCGAGCCAATCCCCG
* **
17578350 GCTTGTGCATTATGCCTCTCCGGCCGGCTCAACGCCCGCACACT
124 ACTTGCACATTATGCCTCTCCGGCCGGCTCAACGCCCGCACACT
* * * *
17578394 CGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCAGACCAAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATAC-AAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGG
*
17578459 TTGCGACAGCAGGATCA
65 TTACGACAGCAGGATCA
17578476 ATAGCACGCA
Statistics
Matches: 205, Mismatches: 39, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
167 3 0.01
168 67 0.33
169 16 0.08
170 3 0.01
171 113 0.55
172 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (167 bp):
CGTTTCGTGGGTTGGCTTAGGCATACAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGT
TACGACAGCAGGATCAGCACAGGATCGACAGCACGCAAGGGGACCGAGCCAATCCCCGACTTGCA
CATTATGCCTCTCCGGCCGGCTCAACGCCCGCACACT
Found at i:17578623 original size:26 final size:26
Alignment explanation
Indices: 17578573--17578625 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17578563 GTTGGCTGAG
*
17578573 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
17578599 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17578625 G
1 G
17578626 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17578869 original size:524 final size:514
Alignment explanation
Indices: 17578075--17579652 Score: 1694
Period size: 524 Copynumber: 3.1 Consensus size: 514
17578065 GTTGGCTTAG
* * * *
17578075 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGACAGCAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCA--AGGACCAGCA
* * * * * * *
17578140 CAGGA-TCGACAGCACGCAAGGGGACCGGGCTAATTCGCGACTTGCACATTCTGCCTCTCCGGCC
64 CA-GATTCGACAGCACGCAGGGGGACCGGGCCAATCCCCG-CTTGCGCATTCTGCCTCTCCAGTC
** * * *
17578204 GGGTGAGCGCCCGCATGCTCGTTTCGCGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
127 GACTGAGCGCCCGCACGCTCGTTTCG-TGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * * * * * *
17578269 GACCCAACTGGACCAAGGGTTATGGCAGCAGGATCGGCAGCGAGATCGATAGCATGCAGAGGGGG
191 G-CCCAGCCGGACCGAGGGTT-TGGTA-CAGGA-CGGCAGCGGGACCGATAGCATGCAAAGGGGG
* * * *
17578334 ACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTCAACGCCCGCACACTCGTTT
252 ATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCTGGCCGGCTCAACGCCCGCACGCTCGTTT
* * * *
17578399 CGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCAGACCAAGGGTTGCG
317 CATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCG
* * * * * * ** *
17578464 ACAGCAGGATCAATAGCACGCATGGGGAGATCGGGCCGGTCTTCGGCTTGTGCATTTTGCCTCTC
382 ACAGTAGGATCGACAGCACGCATGGGG-GATCGGGTCGATC-CCGGCTTGCACATTCTGCCTCTC
* * * *
17578529 CGGTCGACTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTGAGGCATACAGAGTTCATTCCATG
445 CGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
17578594 TCTAA
510 TCTAA
* * * * *
17578599 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGTCTAAGGGTTGCGGCAATAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGC-A-AGGACCAGCA
* *
17578664 CAGCTTCGACAGCACGCAGGGGGACCGGGCCAATCCACCGCTTGCGCATTCTACCTCTCCAGTCG
64 CAGATTCGACAGCACGCAGGGGGACCGGGCCAATCC-CCGCTTGCGCATTCTGCCTCTCCAGTCG
* * * * * *
17578729 ATTGAGCACCTGCACGCTCATTTCATGGTTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAG
128 ACTGAGCGCCCGCACGCTCGTTTCGTGG-TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
* * * *
17578794 CTCTAGCCGGACTGAGGGTTGTGGTGACAGGACCGGCAGCGGGACCGACAGCACGCAAAGGGGGA
192 C-CCAGCCGGACCGAGGGTT-TGGT-ACAGGA-CGGCAGCGGGACCGATAGCATGCAAAGGGGGA
* * **
17578859 TCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGGGCCCGCACGCTCGTTTC
253 TCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCTGGCCGGCTCAACGCCCGCACGCTCGTTTC
* *
17578924 ATGGGTTGACTTATGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAA-GGTTGCG
318 ATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCAAGGGTTGCG
* * * * *
17578988 ATAGTAGGATCGACAGTAC-C-TAGAGGGATCGGGTCGAACCCTGGCTTGCACATTCTGCTTCTC
382 ACAGTAGGATCGACAGCACGCAT-GGGGGATCGGGTCGATCCC-GGCTTGCACATTCTGCCTCTC
* ** * * *
17579051 CGGTCGACTGAGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCAAACGGAGTTCATCCCCA-
445 CGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAT
17579115 GTCTAA
509 GTCTAA
** * *
17579121 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATAGAACTGAGGGTTGCAGC-A--A-CAG----
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAAGGACCAGCACA
* * *
17579178 GATTCG-CAGCACGCAGGGGGGATCGGGCCAATCCCCAGCTTGTGCATTCTGCCTCTCCTGTCGA
66 GATTCGACAGCACGCA-GGGGGACCGGGCCAATCCCC-GCTTGCGCATTCTGCCTCTCCAGTCGA
* * * * *
17579242 CTGACCGCCCGCACGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGC
129 CTGAGCGCCCGCACGCTCGTTTCGT-GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
*
17579307 GCCAGCCGGACCGAGGG-TT-GT-------GGCAGTGGGACCGATAGCATGCAAAGGGGGATCGG
193 -CCAGCCGGACCGAGGGTTTGGTACAGGACGGCAGCGGGACCGATAGCATGCAAAGGGGGATCGG
* * *
17579363 GCTGATCCCTGGCTTGTGCATTATGCCTCTTTGGCCGGCTCAACGCCCGCACGCTCGTTTCATGG
257 GCCGATCCCCGGCTTGTGCATTATGCCTCTCTGGCCGGCTCAACGCCCGCACGCTCGTTTCATGG
* * * * *
17579428 GTTGACTTATGCATACGGAGTTCGTTCCCAATCTAAGATCGGATCGGACCGAGGGTTGC-AGCAG
322 GTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGA-CAG
* ** * * *
17579492 TAGGATCGACAGCACGCAAGGGGGGATTAGGTCGATCCCCGACTTGCACATTCTACCTCTCTGG-
386 TAGGATCGACAGCACGC-ATGGGGGATCGGGTCGAT-CCCGGCTTGCACATTCTGCCTCTCCGGT
* * * * *
17579556 CCAGTTGAGTGCCCGCGCGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
449 CGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
17579621 AA
513 AA
* *
17579623 GCATACGGAGTTCATTCCCAGCCTAAGATT
1 GCATACAGAGTTCATTCCCAGTCTAAGATT
17579653 TTGAGCAACG
Statistics
Matches: 885, Mismatches: 148, Indels: 64
0.81 0.13 0.06
Matches are distributed among these distances:
499 3 0.00
500 155 0.18
501 6 0.01
502 109 0.12
503 3 0.00
509 2 0.00
510 1 0.00
511 12 0.01
512 112 0.13
513 2 0.00
516 3 0.00
517 1 0.00
519 1 0.00
521 1 0.00
522 127 0.14
523 11 0.01
524 329 0.37
525 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (514 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAAGGACCAGCACA
GATTCGACAGCACGCAGGGGGACCGGGCCAATCCCCGCTTGCGCATTCTGCCTCTCCAGTCGACT
GAGCGCCCGCACGCTCGTTTCGTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCA
GCCGGACCGAGGGTTTGGTACAGGACGGCAGCGGGACCGATAGCATGCAAAGGGGGATCGGGCCG
ATCCCCGGCTTGTGCATTATGCCTCTCTGGCCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTG
ACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGTAGGA
TCGACAGCACGCATGGGGGATCGGGTCGATCCCGGCTTGCACATTCTGCCTCTCCGGTCGACTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17579410 original size:159 final size:157
Alignment explanation
Indices: 17579161--17579624 Score: 425
Period size: 159 Copynumber: 2.9 Consensus size: 157
17579151 GGATAGAACT
** * * ** *
17579161 GAGGGTTGCAGCAACAGGATTCG-CAGCACGC-AGGGGGGATCGGGCCAATCCCCAGCTTGTGCA
1 GAGGGTTGCAGCAGTAGGA-CCGACAGCACGCAAAGGGGGATCGGGCTGATCCCCGGCTTGTGCA
* * * * * *
17579224 TTCTGCCTCTCCT-GTCGACTGACCGCCCGCACGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGA
65 TTCTGCCTCT-CTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
*
17579288 GTTCATTCCATGTGTAAGCGCCAGCCGGACC
129 GTTCATTCCATGTCTAAGCG-CA-CCGGACC
** * * * *
17579319 GAGGGTTGTGGCAGTGGGACCGATAGCATGCAAAGGGGGATCGGGCTGATCCCTGGCTTGTGCAT
1 GAGGGTTGCAGCAGTAGGACCGACAGCACGCAAAGGGGGATCGGGCTGATCCCCGGCTTGTGCAT
* * * * * *
17579384 TATGCCTCTTTGGCCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGT
66 TCTGCCTCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* * * *
17579449 TCGTTCCCA-ATCTAAGATCGGATCGGACC
131 TCATT-CCATGTCTAAG--CGCACCGGACC
* * ** * **
17579478 GAGGGTTGCAGCAGTAGGATCGACAGCACGCAAGGGGGGATTAGG-TCGATCCCCGACTTGCACA
1 GAGGGTTGCAGCAGTAGGACCGACAGCACGCAAAGGGGGATCGGGCT-GATCCCCGGCTTGTGCA
* * * ** * *
17579542 TTCTACCTCTCTGGCCAGTTGAGTGCCCGCGCGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAG
65 TTCTGCCTCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
17579607 TTCATTCCATGTCTAAGC
130 TTCATTCCATGTCTAAGC
17579625 ATACGGAGTT
Statistics
Matches: 240, Mismatches: 58, Indels: 17
0.76 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 25 0.10
159 206 0.86
160 4 0.02
161 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GAGGGTTGCAGCAGTAGGACCGACAGCACGCAAAGGGGGATCGGGCTGATCCCCGGCTTGTGCAT
TCTGCCTCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCGCACCGGACC
Found at i:17579648 original size:26 final size:26
Alignment explanation
Indices: 17579597--17579649 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17579587 GTTGGCTTAG
* *
17579597 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
17579623 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
17579649 G
1 G
17579650 ATTTTGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17581209 original size:26 final size:26
Alignment explanation
Indices: 17581172--17581224 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17581162 GTTGACTTAG
*
17581172 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
17581198 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
17581224 G
1 G
17581225 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17581722 original size:26 final size:26
Alignment explanation
Indices: 17581672--17581723 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17581662 GTTGGCTTAG
*
17581672 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
17581698 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17581724 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17582082 original size:26 final size:26
Alignment explanation
Indices: 17582052--17582104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17582042 GTTGACTTAG
*
17582052 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17582078 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17582104 G
1 G
17582105 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17582432 original size:26 final size:26
Alignment explanation
Indices: 17582396--17582446 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17582386 TGGCTTAGGC
*
17582396 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGAAGTTCATTCCCA-GTCTAAGT
17582422 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
17582447 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:17582633 original size:26 final size:26
Alignment explanation
Indices: 17582604--17582656 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17582594 GTTGACTTAG
*
17582604 GCATACGGAGTT-AATCCTCAGTCTAA
1 GCATACGAAGTTCAATCC-CAGTCTAA
*
17582630 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
17582656 G
1 G
17582657 ATCAAACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:17582977 original size:26 final size:26
Alignment explanation
Indices: 17582947--17582999 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17582937 GTTGGCTTAG
*
17582947 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17582973 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17582999 G
1 G
17583000 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17583385 original size:26 final size:26
Alignment explanation
Indices: 17583355--17583407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17583345 GTTGACTTAG
17583355 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
17583381 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17583407 G
1 G
17583408 ATCAGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17583892 original size:26 final size:26
Alignment explanation
Indices: 17583856--17583908 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17583846 GTTGGCTTAG
17583856 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
*
17583882 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
17583908 G
1 G
17583909 ATTAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:17584088 original size:26 final size:26
Alignment explanation
Indices: 17584052--17584104 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17584042 GTTGACTTAG
17584052 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17584078 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17584104 G
1 G
17584105 ATCAAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17584547 original size:26 final size:26
Alignment explanation
Indices: 17584498--17584550 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17584488 GTTGGCTTAG
*
17584498 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17584524 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
17584550 G
1 G
17584551 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17584736 original size:26 final size:26
Alignment explanation
Indices: 17584707--17584759 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17584697 GTTGACTTAG
*
17584707 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17584733 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17584759 G
1 G
17584760 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17585802 original size:355 final size:355
Alignment explanation
Indices: 17585009--17585769 Score: 1180
Period size: 355 Copynumber: 2.1 Consensus size: 355
17584999 CGGCCGGTTC
* * *
17585009 AGCGCCCGCACGCTCGTTTTGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAGTGTAAGATCG
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCG
* * * * * *
17585074 GACTAGACCGAGGGTTGCGATAGCAGGATCGACATAACGTAGGGGGGATCGGGCCGGTCCTCGAC
66 GACTAGACCGAGGGTTGTGACAGCAGGATCGACAGAACGCAGGGGAGATCGGGCCGGTCCCCGAC
* *
17585139 TTACGCATTCTACCTTTTCGGCCAGCTGAGCGCCCGCACGCTCATTCCATGGGTTGGCTTAGGCA
131 TTACGCATTCTACCTTTTCAGCCAGCTGAGCACCCGCACGCTCATTCCATGGGTTGGCTTAGGCA
*
17585204 TACGGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGA
196 TACGGAGTTCATTCCATGTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGA
*
17585269 GGGTTACGACAGCAAGACCAGCAGCAGGATCTACAGCACACAAGAGGAGACCAGGTCGATCCCCG
261 GGGTTACGACAGCAAGACCAGCAGCAGGATCTACAGCACACAAGAGGAGACCAGGCCGATCCCCG
* * *
17585334 GCTTGCGTATTCTGCCTCTCTGACCAACTG
326 GCTTACGTATTCTACCTCTCCGACCAACTG
*
17585364 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCG
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCG
* * * *
17585429 GACCAGACCGAGGGTTGTGACAGTAGGATCGACAGCACGCAGGGGAGATCGGGTCGGTCCCCGAC
66 GACTAGACCGAGGGTTGTGACAGCAGGATCGACAGAACGCAGGGGAGATCGGGCCGGTCCCCGAC
* * *
17585494 TTATGCATTCTACCTTTTCAGCCAGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
131 TTACGCATTCTACCTTTTCAGCCAGCTGAGCACCCGCACGCTCATTCCATGGGTTGGCTTAGGCA
* *
17585559 TACGGAGTTCATTCCATGTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA
196 TACGGAGTTCATTCCATGTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGA
* * * * * ** *
17585624 GGGTTACGACAGCAGGACCAGCTGCAGGATCTGCAGCACACAGGGGGAGACTGGGCCGATCCCTG
261 GGGTTACGACAGCAAGACCAGCAGCAGGATCTACAGCACACAAGAGGAGACCAGGCCGATCCCCG
***
17585689 GCTTACGTATTCTACCTCTCCGACTGGCTG
326 GCTTACGTATTCTACCTCTCCGACCAACTG
*
17585719 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
17585770 AATGTCTAAG
Statistics
Matches: 367, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
355 367 1.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (355 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCG
GACTAGACCGAGGGTTGTGACAGCAGGATCGACAGAACGCAGGGGAGATCGGGCCGGTCCCCGAC
TTACGCATTCTACCTTTTCAGCCAGCTGAGCACCCGCACGCTCATTCCATGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGA
GGGTTACGACAGCAAGACCAGCAGCAGGATCTACAGCACACAAGAGGAGACCAGGCCGATCCCCG
GCTTACGTATTCTACCTCTCCGACCAACTG
Found at i:17585973 original size:26 final size:27
Alignment explanation
Indices: 17585937--17585987 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
17585927 GTTGACTTAG
17585937 GCATACGGAG-TTCA-TCCCTAGTCTAA
1 GCATACGGAGTTTCATTCCC-AGTCTAA
17585963 GCATACGGAGTTTCATTCCCAGTCT
1 GCATACGGAGTTTCATTCCCAGTCT
17585988 GAGATTGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 10 0.43
27 9 0.39
28 4 0.17
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (27 bp):
GCATACGGAGTTTCATTCCCAGTCTAA
Found at i:17586444 original size:26 final size:26
Alignment explanation
Indices: 17586395--17586447 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17586385 GTTGGCTTAG
* *
17586395 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
17586421 GCATACGGAGTTCACTCCCA-GTCTAA
1 GCATACGGAGTTCA-TCCCATGTCTAA
17586447 G
1 G
17586448 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:17586814 original size:26 final size:26
Alignment explanation
Indices: 17586763--17586815 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17586753 GTTGGCTTAG
*
17586763 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
17586789 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACGGAGTTCATTCCAT-GCCTAA
17586815 G
1 G
17586816 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17587517 original size:26 final size:26
Alignment explanation
Indices: 17587487--17587539 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17587477 GTTGACTTAG
17587487 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * *
17587513 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17587539 G
1 G
17587540 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17587802 original size:159 final size:157
Alignment explanation
Indices: 17587577--17588016 Score: 422
Period size: 159 Copynumber: 2.8 Consensus size: 157
17587567 CAGGATCGGT
** * * * * *
17587577 AGCACGCAGTCGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGTTGAGCGC
1 AGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCTGG-CGGCTGAGCGC
* * * *
17587642 CCGCTCGCCCGTTTCGTGGGTTGGTGTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACC
65 CCGCACGCTCGTTTCGTGGGTTGGT-TAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
** ** *
17587706 GAACTTAGGGTTGTGGTA-ATGGGACCGAC
129 GAACCGAGGGTTACGGCAGAT-GGACCGAC
* *
17587735 AGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCG
1 AGCACGCAG-GGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCTGG-CGGCTGAGCG
* * * * * *
17587800 CCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAATTCATTCC-TAGTCTAAG-ATCAGA
64 CCCGCACGCTCGTTTCGTGGGTTG-GTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGA
* * * *
17587863 CCGGACCGAGGGTTACGGCAGCTGGATCGAT
127 CCGAACCGAGGGTTACGGCAGATGGACCGAC
* ** * * *
17587894 AGCACGTAGGGGGGGCCGGGTCGATCCTTGACTTGTGCATTATGCCTCT-TAGGCTGGCTGAGCA
1 AGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCT-GGC-GGCTGAGCG
* * *
17587958 CCCGCACACTCGTTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 CCCGCACGCTCGTTTCGTGGGTTGG-TTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17588017 TACGGAGTTC
Statistics
Matches: 227, Mismatches: 45, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 102 0.45
159 121 0.53
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
AGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCTGGCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA
ACCGAGGGTTACGGCAGATGGACCGAC
Found at i:17588017 original size:26 final size:26
Alignment explanation
Indices: 17587988--17588040 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17587978 GTTGGCTTAG
17587988 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17588014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17588040 G
1 G
17588041 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17588233 original size:26 final size:25
Alignment explanation
Indices: 17588204--17588275 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 25
17588194 TAGGCATACA
17588204 GAGTTCATCCTCAGTCTAAGCATATG
1 GAGTTCATCC-CAGTCTAAGCATATG
*
17588230 GAGTTCATCCCCAGTCTAAACATATG
1 GAGTTCAT-CCCAGTCTAAGCATATG
17588256 GAGTTCATTCCCAGTCTAAG
1 GAGTTCA-TCCCAGTCTAAG
17588276 ATCAGACCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 39 0.93
27 3 0.07
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (25 bp):
GAGTTCATCCCAGTCTAAGCATATG
Found at i:17588673 original size:11 final size:11
Alignment explanation
Indices: 17588657--17588685 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
17588647 CTCGAGGGAC
17588657 CATCGTCAGAA
1 CATCGTCAGAA
17588668 CATCGTCAGAA
1 CATCGTCAGAA
17588679 CATCGTC
1 CATCGTC
17588686 GGAGAGCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (11 bp):
CATCGTCAGAA
Found at i:17589588 original size:158 final size:157
Alignment explanation
Indices: 17589324--17589812 Score: 495
Period size: 158 Copynumber: 3.1 Consensus size: 157
17589314 GATCAGACCA
* * * *
17589324 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGAGGGATCAGGCCTATCCTCGAC-TAGC
1 GACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGG-GGGATCGGGCCGATCCTCGACTTA-C
* ** * * * * *
17589388 GCATTCTGCCTCTCCGACCTGTTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCACAGG
64 GCATTCTGCCTCTCTGACAAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
17589453 GAGTTCATTCCATGTCTAAGCCCCAATCG
129 GAGTTCATTCCATGTCTAAGCCCCAATCG
* * *
17589482 GACCGAGGGTTATGGTAGTAGGATCGACAGCACGTAGGGGGAACCGGGCCGATCCTC-AGCTTAC
1 GACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGGGGG-ATCGGGCCGATCCTCGA-CTTAC
** * * * *
17589546 GCATTCTGCCTCTCTGGTAGGCTGAGCACCCACACGCTCATTTCATGGGTTGGCTTACGCATACG
64 GCATTCTGCCTCTCTGACAAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
**
17589611 GAGTTCATTCCCA-GTCTAAG-ATCAGA-CTG
129 GAGTTCATT-CCATGTCTAAGCCCCA-ATC-G
* * ** * * * * **
17589640 GATCAAGGGTTGCAGTAGCAGGATCAACAGCACGTAGGGGGGATTGGGTCGATCCCCGACTTGTG
1 GACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTA-GGGGGATCGGGCCGATCCTCGACTTACG
** * *
17589705 CATTCTGCCTCT-TCGACAAGCTGAGCGCCCGCACGCTTGTTTCATGGGTTAGCTTAGGCATACC
65 CATTCTGCCTCTCT-GACAAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
* *
17589769 GAGTTCATTCCTTGTCTAAGCCCCAGTCG
129 GAGTTCATTCCATGTCTAAGCCCCAATCG
*
17589798 GTCCGAGGGTTGTGG
1 GACCGAGGGTTGTGG
17589813 CGATAGGACC
Statistics
Matches: 265, Mismatches: 54, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 10 0.04
158 241 0.91
159 14 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGGGGGATCGGGCCGATCCTCGACTTACGC
ATTCTGCCTCTCTGACAAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAATCG
Found at i:17589982 original size:26 final size:26
Alignment explanation
Indices: 17589946--17589998 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17589936 GTTGACTTAG
*
17589946 GCATACGGAGTTCA-CCCCTAGTCTAA
1 GCATAAGGAGTTCATCCCC-AGTCTAA
*
17589972 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
17589998 G
1 G
17589999 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:17590365 original size:157 final size:157
Alignment explanation
Indices: 17590112--17590471 Score: 363
Period size: 157 Copynumber: 2.3 Consensus size: 157
17590102 TGCTCACCCG
* * * * * *
17590112 TTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCC-ATGTCTAAGCCCCAGCTGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCTA-GTCTAAGACCAAACTGGACCGAGGGT
* ** * * *
17590176 TGTGGCACTGGGACCGACAGCATGCAGAGGGGATC-GAG-TCGATC-CCTGGCTTGCGTATTATG
64 TGTGGCACTAGGACCGACAGCACACAGAGGGGA-CAGGGCT-GATCGCC-GGCTTGCGCATTATA
* ** *
17590238 CCTCTCTAGCTTGCTCAGCGATCGAACGCTCA
126 CCTCTCCAGCCGGCTCAGCGACCGAACGCTCA
* *
17590270 TTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCTAGTCTAAGATCAAACTGGACCGAGGGTTG
1 TTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCTAGTCTAAGACCAAACTGGACCGAGGGTTG
* * * *
17590335 TGGCAAC-AGGACCGATAGCACACAGGGGGGACAGGGCTGGTCGCCGGCTTGCGCATTCTACCTC
66 TGGC-ACTAGGACCGACAGCACACAGAGGGGACAGGGCTGATCGCCGGCTTGCGCATTATACCTC
* * * * *
17590399 TCCAGCCGGTTGAGCGCCCGCACGCTCG
130 TCCAGCCGGCTCAGCGACCGAACGCTCA
17590427 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATA-TCTAAG
1 TTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCC-TAGTCTAAG
17590472 CAAATGGAGT
Statistics
Matches: 167, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
156 1 0.01
157 120 0.72
158 44 0.26
159 2 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
TTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCTAGTCTAAGACCAAACTGGACCGAGGGTTG
TGGCACTAGGACCGACAGCACACAGAGGGGACAGGGCTGATCGCCGGCTTGCGCATTATACCTCT
CCAGCCGGCTCAGCGACCGAACGCTCA
Found at i:17590683 original size:26 final size:26
Alignment explanation
Indices: 17590654--17590706 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17590644 GTTAACTTAG
17590654 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17590680 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17590706 G
1 G
17590707 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17591248 original size:368 final size:368
Alignment explanation
Indices: 17590569--17591252 Score: 851
Period size: 368 Copynumber: 1.9 Consensus size: 368
17590559 GGATTGGGCC
* * * * * *
17590569 GATCCCTGGCTTGCGCATTCTATCTCTCCGATCGGCCTCTCCGACCGGCTAAGCTCCCGCATGCT
1 GATCCCTGGCTTGCGCATTATACCTCTCCGATCGGCCTCTCCAACCGACTAAGCACCCGCACGCT
* * *
17590634 CATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
66 CATTTCATGGGTTAACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * * * * *
17590699 AGTCTAAGATCGGATCGAACTGAGGGTTATAGCCACAAGATCGGTAGCACGCAGGGGGGACTGGG
131 AGTCCAAGATCAGACCGAACTGAGGGTTAGAGCCACAAGATCGATAGCACACAGGAGGGACCGAG
** ** * **
17590764 TTGATCCCCGGCTTGTGCATTCCACCTTTCCGACTGGCTGAGCACCCATACGCTCATTTCATGGG
196 CCGATCCCCGGCTTACGCATTCCACCTCTCCGACCAGCTGAGCACCCATACGCTCATTTCATGGG
17590829 TTGGATTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCA
261 TTGGATTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCA
17590894 GGACCGACAGCAGGATTGGTAGCACGCAGAGAGGGGTCAGGCT
326 GGACCGACAGCAGGATTGGTAGCACGCAGAGAGGGGTCAGGCT
* * * *
17590937 GATCCCTGGCTTGCGCATTATGCCTCTCCTG-TCGGCCTGTCCAACTGAC-AGAGCACCCGTACG
1 GATCCCTGGCTTGCGCATTATACCTCTCC-GATCGGCCTCTCCAACCGACTA-AGCACCCGCACG
* *
17591000 CTCGTTTCATGGGTTGACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATACGGAGTTCATTC
64 CTCATTTCATGGGTTAACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * *
17591065 CCAGTCCAAGATCAGACC-AGACTGAGGGTT-GCGGCAGCAGGATCGATAGCACACAGGAGGGAC
129 CCAGTCCAAGATCAGACCGA-ACTGAGGGTTAGAGCCA-CAAGATCGATAGCACACAGGAGGGAC
* ** * *
17591128 CGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCC-ATCCAGCTGAGCACCCGCATGC-CT-GTT
192 CGAGCCGATCCCCGGCTTACGCATTCCACCTCTCCGA-CCAGCTGAGCA-CC-CATACGCTCATT
* * * * **
17591190 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
254 TCATGGGTTGGATTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTT
17591253 GTCACAGTTG
Statistics
Matches: 264, Mismatches: 45, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
367 6 0.02
368 249 0.94
369 5 0.02
370 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (368 bp):
GATCCCTGGCTTGCGCATTATACCTCTCCGATCGGCCTCTCCAACCGACTAAGCACCCGCACGCT
CATTTCATGGGTTAACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCCAAGATCAGACCGAACTGAGGGTTAGAGCCACAAGATCGATAGCACACAGGAGGGACCGAG
CCGATCCCCGGCTTACGCATTCCACCTCTCCGACCAGCTGAGCACCCATACGCTCATTTCATGGG
TTGGATTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCA
GGACCGACAGCAGGATTGGTAGCACGCAGAGAGGGGTCAGGCT
Found at i:17591753 original size:26 final size:26
Alignment explanation
Indices: 17591705--17591754 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
17591695 GTTGGCTTAG
**
17591705 GCATACGGAGTTCATCTGTAGTCTGA
1 GCATACGGAGTTCATCTCCAGTCTGA
17591731 GCATACGGAGTTCAT-TCCCAGTCT
1 GCATACGGAGTTCATCT-CCAGTCT
17591755 AAGATCATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTGA
Found at i:17591777 original size:184 final size:182
Alignment explanation
Indices: 17591365--17591915 Score: 561
Period size: 184 Copynumber: 3.0 Consensus size: 182
17591355 GTTGACTTAG
* * *
17591365 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGCTAAGGGTTGCGGCAGCAGGATCGACAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGCTGAGGGTTGCGGTAGCAGGATCGACAG
* * * * * *
17591430 CACGCAGGGGGGACCGGGCTAGTCCTCGGATTACGCA-TCTGCCTC-TCTGGTCGGCTGAGTGTC
66 CACGCAGGGGGGACCGGCCGA-TCCCCAGCTTACGCATTCTGCCTCTTC-GGTCGGCTGAGTGCC
* * * *
17591493 TGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGATTTCATCCCCAGTCTAA
129 CGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAA
** ** * * ** * **
17591547 GCATATAGAGTTCATTCTGAGTCTAAGATCAGGCCAGACTGAGGGTTATGGTAACAGGATCGATT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GGCTGAGGGTTGCGGTAGCAGGATCGACA
* * * *
17591612 GCACGCAGTGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCAGTCGGTTGAGTGCC
65 GCACGCAGGGGGGACC-GGCCGATCCCCAGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGTGCC
* *** *
17591677 CGTATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCTGTAGTCTGA
129 CGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * *
17591731 GCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGTCCGAGGGTTGCGATAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG-CTGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
17591796 GCATGCGGGGGGGACTGGGCCGATCCCCAGCTTACGTATTCTGCC-CTCCGGTCGGCTGAGCGCC
65 GCACGCAGGGGGGAC-CGGCCGATCCCCAGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGTGCC
* * * * *
17591860 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAA
129 CGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAA
17591914 GC
1 GC
17591916 CTCAGCTTGA
Statistics
Matches: 294, Mismatches: 68, Indels: 13
0.78 0.18 0.03
Matches are distributed among these distances:
182 32 0.11
183 107 0.36
184 153 0.52
185 2 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGCTGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGACCGGCCGATCCCCAGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCG
CATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:17592021 original size:26 final size:26
Alignment explanation
Indices: 17591985--17592035 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17591975 AGGCTTAGGC
17591985 ATACAGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
* *
17592011 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
17592036 ATCGAATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:17593580 original size:159 final size:157
Alignment explanation
Indices: 17593203--17593582 Score: 354
Period size: 159 Copynumber: 2.4 Consensus size: 157
17593193 CCCAGCCTAA
* * * * * *
17593203 GCATACGTAGTTCATTCCTAGTGTAAGATCGGACCGGGCCGAGGGTTACGGCAGCTGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAG-TGGACCGACA
* * * * *
17593268 GCACGCAGGAAGGACCGGGTCGATCCCCAGCTTACGGATTCTGCCTCTCTGGCCAGCTGAGCGCC
65 GCACGCAGGAAGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCTCGACAGCTGAGCACC
*
17593333 CGCACACCCATTTCATGGGTTGGCTTAG
130 CGCACACCCATTTCATGGGTTGACTTAG
* ** * ** *
17593361 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGGCAG-TGGACCGA
** * ** * *
17593424 CAGCACGCAGAGGGGGATCGGGTCGATCCCC-GACTTGTGCATTATGCCTCT-TCGATAGGCTTA
63 CAGCACGCAG-GAAGGACCGGGTCGATCCCCAG-CTTACGCATTATGCCTCTCTCGACA-GCTGA
* * * * * *
17593487 GTACCCGCACGCTCGTTTCGTGGGTTGACTTAT
125 GCACCCGCACACCCATTTCATGGGTTGACTTAG
* *
17593520 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGTAGGACCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGT-GGACCGA
17593583 GCCCATCCCC
Statistics
Matches: 173, Mismatches: 41, Indels: 15
0.76 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 61 0.35
159 107 0.62
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTGGACCGACAG
CACGCAGGAAGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCTCGACAGCTGAGCACCC
GCACACCCATTTCATGGGTTGACTTAG
Found at i:17593708 original size:26 final size:26
Alignment explanation
Indices: 17593658--17593710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17593648 GTTAGCTTAG
*
17593658 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17593684 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17593710 G
1 G
17593711 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17594407 original size:26 final size:26
Alignment explanation
Indices: 17594377--17594429 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17594367 GTTGACTTAG
17594377 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17594403 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17594429 G
1 G
17594430 ATGGAACTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17595792 original size:184 final size:184
Alignment explanation
Indices: 17595459--17595927 Score: 534
Period size: 184 Copynumber: 2.5 Consensus size: 184
17595449 ACTACCCGTT
* ** * * * *
17595459 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGCC-AGTTGAGCGTCCGTACGCTCGTTTCATGGG
1 CGATCCCCGGCTTACGCATTATGCCTCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
17595523 TTGACTTAAGCATACGAAGTTCATCTCCAGTGTAAGCATACAAAGTTCATTCCTAGTCTAAAATC
65 TTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAAATC
** *
17595588 AAACCGGACCAAGGGTTGCGGTTGCAGGATTGGCAACACACAGGGGGGACCG-GAC
130 AAACCGGACCAAGGGTTGCGGCAGCAGGATTGACAACACACAGGGGGGACCGAG-C
* * *
17595643 CGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGGACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTACGCATTATGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
17595708 TGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAAATCA
* * * * * *
17595773 AATCGGACC-TGGAGTTGCGGCAGCAGGATTGATAGCACGCAGGGGGGATCGAGC
131 AACCGGACCAAGG-GTTGCGGCAGCAGGATTGACAACACACAGGGGGGACCGAGC
* * * * * * *
17595827 TGAACCTCGGCTTACGCATTTTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGT
1 CGATCCCCGGCTTACGCATTATGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG-
*
17595892 TTG-CTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
65 TTGACTTAGGCATACGGAGTTCATCTCCA-GTCTAAGC
17595928 CCCAGCCGGA
Statistics
Matches: 241, Mismatches: 39, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
183 5 0.02
184 231 0.96
185 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (184 bp):
CGATCCCCGGCTTACGCATTATGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAAATCA
AACCGGACCAAGGGTTGCGGCAGCAGGATTGACAACACACAGGGGGGACCGAGC
Found at i:17596270 original size:26 final size:26
Alignment explanation
Indices: 17596221--17596270 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17596211 GGCTTAGGCA
*
17596221 TACGGAGTTCATTCCATGTGTAAGCG
1 TACGGAGTTCATTCCATGTCTAAGCG
17596247 TACGGAGTTCATTCCCA-GTCTAAG
1 TACGGAGTTCATT-CCATGTCTAAG
17596271 ATTTTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGTCTAAGCG
Found at i:17596369 original size:11 final size:11
Alignment explanation
Indices: 17596340--17596372 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
17596330 CCCGAGGCAC
*
17596340 CATCGCCAGAG
1 CATCGCCGGAG
17596351 CATCGCCGGAG
1 CATCGCCGGAG
17596362 CATCGCCGGAG
1 CATCGCCGGAG
17596373 AGCCTAACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.36, G:0.33, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:17597972 original size:26 final size:26
Alignment explanation
Indices: 17597942--17597993 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17597932 GTTGACTTAG
*
17597942 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17597968 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17597994 AATCGAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17599163 original size:26 final size:26
Alignment explanation
Indices: 17599125--17599180 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
17599115 TGGGTTGACT
*
17599125 TAAGCATACGGAGTTCA-TCCTCAGTC
1 TAAGCATAAGGAGTTCATTCC-CAGTC
17599151 TAAGCATAAGGAGTTCATTCCCAGTC
1 TAAGCATAAGGAGTTCATTCCCAGTC
17599177 TAAG
1 TAAG
17599181 ATCGAACTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATAAGGAGTTCATTCCCAGTC
Found at i:17599474 original size:159 final size:158
Alignment explanation
Indices: 17599154--17599972 Score: 724
Period size: 158 Copynumber: 5.2 Consensus size: 158
17599144 CTCAGTCTAA
* * * *
17599154 GCATAAGGAGTTCATTCCCA-GTCTAAGATC-GAACTGGACTGAGGGTTGTGGCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAG-ACTGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
17599217 CAGCAAGCAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGACCTGCTGAAC
64 CAGCACGCAGAGGGGGATCGGGCCGAT-CCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* * *
17599281 ACCCACACGGC-CGTTTCGTGGGTTGGCTTAG
128 GCCCGCAC-GCTCGTTTCATGGGTTGGCTTAG
* * * * *
17599312 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * *
17599376 AGCACGCAGAGGGGGAGCGGGCCGATCGCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCG
65 AGCACGCAGAGGGGGATCGGGCCGATC-CTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
17599441 CCCGTACGCTCATTTTATGGGTTGACTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * ** * * *
17599471 GCATACGAAGCTCATTCTAGGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGACCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * ** * * * *
17599536 GCACACAG-GGGCGACCGAACCGATCCTCGGCTTGCGTATTCTGCCTCTCCCGCCGGTTGAGTGC
66 GCACGCAGAGGGGGATCGGGCCGATCCT-GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
*
17599600 CCACACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
17599629 GCATACAGAGTTCATTCCATGTCTAAGCCCCAG-CTGAACCGAGGGGTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACTGGACCGAGGGTTGTGGCAGCAGGATC-GA
* * * * * * *
17599692 CAGCACACAGAAGGGGA-CTGGGCCAATCCTCGGCTTGCACATTATGCCTCTCCGACCGGCTTAG
64 CAGCACGCAGAGGGGGATC-GGGCCGATCCT-GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * * **
17599756 CACCCGCACACTCGTTTCGTGGGTTAACTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * ** *
17599788 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
17599852 AGCACGCA-AGGTGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTTTCCAGCCGGCTGAGCG
65 AGCACGCAGAGGGGGATCGGGCCGAT-CCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * *
17599916 CCCGCATGCTCATTTCAGGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
17599946 GCATACGAAGTTCATTCCATATCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17599973 CGTATGGAGT
Statistics
Matches: 520, Mismatches: 123, Indels: 36
0.77 0.18 0.05
Matches are distributed among these distances:
157 9 0.02
158 268 0.52
159 238 0.46
160 5 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGGATCGGGCCGATCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17599532 original size:500 final size:499
Alignment explanation
Indices: 17598577--17599656 Score: 1338
Period size: 500 Copynumber: 2.2 Consensus size: 499
17598567 TCTCCGACCG
* *
17598577 GCCTCTCCGGTCGGTTGAGCGCCCGCACTCTCGTTTCATGGGTTGACTT-CGACATACGGAGTTC
1 GCCTCTCC-GTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAG-CATACGGAGTTC
*
17598641 ATCCCCAGTCTAAGAATACAAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGAC
64 AT-CCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGAC
* * * * * *
17598706 AGTAGTATCGACAGCACGTAGAAGGGACTAGGCCGATCCCCGGCTTGCACATTCTGTCTCTCCGG
128 AGTAGGATCGACAGCAAGCAGAAGGGACGAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGC
* *
17598771 CTGGCTGAGAGCCCGCAGGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
193 CTGGCTGAGAACCCACAGGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * *
17598836 AAGACCCAGCCGGACCGAGTGTTGTGGCAGCGGGACTGGCAGCACACTGAGGGGGATCAGGCCGA
258 AAGACCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACACAGAGGGGGAGCAGGCCGA
* * * * *
17598901 TCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAATGCCCGTACGCTCGTTTCATTGGTTGA
323 TCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCGTACGCTCATTTCATGGGTTGA
* * * * * *
17598966 CTTATGCATATGAAGTTCATTCTCAGTCTAAGATCGGCCCAGACCAAGGGTTCCGACGACAGGAT
388 CTTAGGCATACGAAGCTCATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTACGACGACAGGAT
* * ***
17599031 CGACAGCACGC-GGGAGGGACCGGGTCGATCCCCGACTTGCGCA-TCT
453 CGACAGCACACAGGG-GCGACCGAACCGATCCCCGACTTGCGCATTCT
** * *
17599077 GCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCA
1 GCCTCTCCG-TCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCA
* * *
17599142 TCCTCAGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATCGAACTGGA-CTGAGGGTTGTGG
65 TCC-CAGTCTAAGCATACA-AAGTTCATTCCCAGTCTAAGATCGAACTGGATC-GAGGGTTGCGA
** * *
17599205 CAGTAGGATCGACAGCAAGCAGGGGGGATCGA-GCCGATCCCCGGCTTGCGCATTCTGCCTTTCC
127 CAGTAGGATCGACAGCAAGCAGAAGGGA-CGAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCC
*
17599269 GACCT-GCTGA-ACACCCACACGG-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
191 G-CCTGGCTGAGA-ACCCACA-GGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * * *
17599331 TGTTTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGA-TCGGCAGCACGCAGAGGGGGAGCG
253 TGTCTAAGACCCAGCCGGACCGAGGGTTGTGGCAGCGGGACT-GGCAGCACACAGAGGGGGAGCA
* * *
17599395 GGCCGATCGCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGTACGCTCATTTTATG
317 GGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCGTACGCTCATTTCATG
* * *
17599460 GGTTGACTTAGGCATACGAAGCTCATTCT-AGGTCTAAGATCAGACCAGACCGAGGGTTATGGC-
382 GGTTGACTTAGGCATACGAAGCTCATTCTCA-GTCTAAGATCAGACCAGACCAAGGGTTACGACG
* * * * *
17599523 AGTAGGATCGATAGCACACAGGGGCGACCGAACCGATCCTCGGCTTGCGTATTCT
446 A-CAGGATCGACAGCACACAGGGGCGACCGAACCGATCCCCGACTTGCGCATTCT
* * * * * *
17599578 GCCTCTCCCGCCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA
1 GCCTCT-CCGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCA
*
17599643 TTCCATGTCTAAGC
65 TCCCA-GTCTAAGC
17599657 CCCAGCTGAA
Statistics
Matches: 495, Mismatches: 69, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
499 9 0.02
500 409 0.83
501 74 0.15
502 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (499 bp):
GCCTCTCCGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCAT
CCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGACAGT
AGGATCGACAGCAAGCAGAAGGGACGAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGCCTG
GCTGAGAACCCACAGGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
ACCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACACAGAGGGGGAGCAGGCCGATCC
CTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCGTACGCTCATTTCATGGGTTGACTT
AGGCATACGAAGCTCATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTACGACGACAGGATCGA
CAGCACACAGGGGCGACCGAACCGATCCCCGACTTGCGCATTCT
Found at i:17599788 original size:317 final size:313
Alignment explanation
Indices: 17599165--17599973 Score: 903
Period size: 317 Copynumber: 2.5 Consensus size: 313
17599155 CATAAGGAGT
* ** *
17599165 TCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTTGTGGCAGTAGGATCGACAGCA-AGCAGG
1 TCATTCCCAATCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACA-CA-G
* * * *
17599228 GGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGACCTGCTGAACACCCACACGGC-
63 GGGGATCGAGCCGAT-CCCGGCTTGCGCATTCTGCCTTCCCG-CCGGCTGAGCGCCCACAC-GCT
* * * *
17599292 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCTGGACCGAGGG
125 CGTTTCATGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGGG
* * * * * *
17599357 TTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGAGCGGGCCGATCGCTGGCTTGCGCATTATGC
189 GTGTGGCAGCGGGATCGACAGCACACAGAAGGGGAGCGGGCCAATCGCTGGCTTGCACATTATGC
* * * * * *
17599422 CTCTCCGGCCGGCTCAGCGCCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGAAGC
254 CTCTCCGACCGGCTCAGCACCCGCACACTCATTTCATGGGTTAACTTAGGCATACGAAGC
* * * *
17599482 TCATT-CTAGGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGTAGGATCGATAGCACACAGGG
1 TCATTCCCA-ATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACACAGGG
* * * * *
17599546 GCGACCGAACCGATCCTCGGCTTGCGTATTCTGCCTCTCCCGCCGGTTGAGTGCCCACACGCTCG
65 G-GATCGAGCCGATCC-CGGCTTGCGCATTCTGCCT-TCCCGCCGGCTGAGCGCCCACACGCTCG
17599611 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGGGGT
127 TTTCATGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGGGGT
17599676 GTGGCAGCGGGA-CTGACAGCACACAGAAGGGGA-CTGGGCCAATC-CTCGGCTTGCACATTATG
191 GTGGCAGCGGGATC-GACAGCACACAGAAGGGGAGC-GGGCCAATCGCT-GGCTTGCACATTATG
* * * * *
17599738 CCTCTCCGACCGGCTTAGCACCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGT
253 CCTCTCCGACCGGCTCAGCACCCGCACACTCATTTCATGGGTTAACTTAGGCATACGAAGC
* * ** * * * *
17599799 TCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCAACAGCACGCAAGGT
1 TCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACAC-AGGG
* * * * * * *
17599864 GGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTTTCCAGCCGGCTGAGCGCCCGCATGCTCAT
65 GGATCGAGCCGATCCC-GGCTTGCGCATTCTGCC-TTCCCGCCGGCTGAGCGCCCACACGCTCGT
* *
17599929 TTCAGGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCTAAGC
128 TTCATGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGC
17599974 GTATGGAGTT
Statistics
Matches: 414, Mismatches: 62, Indels: 32
0.81 0.12 0.06
Matches are distributed among these distances:
316 16 0.04
317 385 0.93
318 13 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (313 bp):
TCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACACAGGGG
GATCGAGCCGATCCCGGCTTGCGCATTCTGCCTTCCCGCCGGCTGAGCGCCCACACGCTCGTTTC
ATGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGGGGTGTGGC
AGCGGGATCGACAGCACACAGAAGGGGAGCGGGCCAATCGCTGGCTTGCACATTATGCCTCTCCG
ACCGGCTCAGCACCCGCACACTCATTTCATGGGTTAACTTAGGCATACGAAGC
Found at i:17600161 original size:26 final size:26
Alignment explanation
Indices: 17600124--17600176 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17600114 GTTGGATTAG
*
17600124 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
17600150 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
17600176 G
1 G
17600177 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:17600548 original size:26 final size:26
Alignment explanation
Indices: 17600518--17600570 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17600508 GTTGGCTTAG
*
17600518 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
*
17600544 GCATACTGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
17600570 G
1 G
17600571 ATCAGACCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:17601173 original size:13 final size:13
Alignment explanation
Indices: 17601155--17601182 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17601145 TGCCCATTAT
17601155 GCCTCTCCGGTTG
1 GCCTCTCCGGTTG
17601168 GCCTCTCCGGTTG
1 GCCTCTCCGGTTG
17601181 GC
1 GC
17601183 TGAGCACCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.39, G:0.32, T:0.29
Consensus pattern (13 bp):
GCCTCTCCGGTTG
Found at i:17601712 original size:158 final size:156
Alignment explanation
Indices: 17601252--17601736 Score: 429
Period size: 158 Copynumber: 3.1 Consensus size: 156
17601242 TAAGCGTACG
* * * * *
17601252 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGACGGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGG-TTGAGGGTTGCGACAGCAGGATCGACAGCACACA
* * * * * * *
17601317 GGGGGGA-CTGGGCAGATCCCCGGCATACGCATTCTGCCTCTCCGGCCCATTGAGTGCCCGGACG
65 GGGGGGATC-GGGCA-ATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACG
* **
17601381 CCCGTTTCATGGGTTGGCTTAGGCATAGG
128 CTCGTTTCATGGGTTGGCTTAGGCATACA
** * *** * ** * * * **
17601410 GAGTTCATT-CCATGTCTAAGCCCCAG-CCAAAATGAGGGTTGTGGTAGCGGGACCGACAGTATG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGATC-GGTTGAGGGTTGCGACAGCAGGATCGACAGCACA
* * * * * * * *
17601473 CAGAGGGGGATCGGGCCATTCCTCGACTTGCGCATTATGCCTCTTCGGCCTG-CTCAGCGTCAGT
63 CAG-GGGGGATCGGG-CAATCCCCGACTTGCGCATTCTGCCTCTCCGGCC-GACTGAGCGCCCGC
* * * *
17601537 ACGCTCATTTCGTGGGTTGACTTATGCATACA
125 ACGCTCGTTTCATGGGTTGGCTTAGGCATACA
* * *
17601569 GAGTTCATTCCCAGTCTAAGATCAGATCGGTGTGAGGGATACGACAGCAGGATCGACAGCACATA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGT-TGAGGGTTGCGACAGCAGGATCGACAGCACACA
* *
17601634 GGGGGGATCGGGCTAATCCCCAACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGC
65 GGGGGGATCGGGC-AATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGC
17601699 TCGTTTCATGGGTTGGCTTAGGCATACA
129 TCGTTTCATGGGTTGGCTTAGGCATACA
17601727 GAGTTCATTC
1 GAGTTCATTC
17601737 AATGTCTAAG
Statistics
Matches: 246, Mismatches: 69, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
157 5 0.02
158 128 0.52
159 107 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGTTGAGGGTTGCGACAGCAGGATCGACAGCACACAG
GGGGGATCGGGCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACA
Found at i:17601750 original size:26 final size:25
Alignment explanation
Indices: 17601720--17601771 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
17601710 GTTGGCTTAG
17601720 GCATACAGAGTTCATTCAATGTCTAA
1 GCATACAGAGTTCATTCAA-GTCTAA
* *
17601746 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCAAGTCTAA
17601771 G
1 G
17601772 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCAAGTCTAA
Found at i:17602471 original size:26 final size:26
Alignment explanation
Indices: 17602442--17602494 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17602432 GTTGACTTAG
17602442 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17602468 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17602494 G
1 G
17602495 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17602754 original size:159 final size:156
Alignment explanation
Indices: 17602503--17602787 Score: 394
Period size: 159 Copynumber: 1.8 Consensus size: 156
17602493 AGATCAAACT
* *
17602503 GGACCGAGGGTTGTGCAGTAGGATCGGTAGCATGCAGGGGGACTGGGTCGATCCCCGGCTTACGC
1 GGACCGAGGGTTGTGCAGTAGGATCGGTAGCACGCAGGGGGACTGGGTCGATCCCCGACTTACGC
* * * * * *
17602568 ATTCTGCCTTTCTGGCTGGCTGAGTGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
66 ATTATGCCTCTCTGACTGGCTCAGTGCCCACACGCCCGTTTCGTAGGTTGACTTAGGCATAGGGA
17602633 GTTAATTCCATGTCAAAGCCCCAGTC
131 GTTAATTCCATGTCAAAGCCCCAGTC
*
17602659 GGACCGAGGGTTGTGGCAGTGGGATCGGTAGCACGCAAAGGGGGA-TCGGG-CTGATCCCCGACT
1 GGACCGAGGGTTGT-GCAGTAGGATCGGTAGCACGC--AGGGGGACT-GGGTC-GATCCCCGACT
* ** *
17602722 TGCGCATTATGCCTCTCTGACTGGCTCAGTGCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCAT
61 TACGCATTATGCCTCTCTGACTGGCTCAGTGCCCACACGCCCGTTTCGTAGGTTGACTTAGGCAT
17602787 A
126 A
17602788 CAAAGTTTAT
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
156 14 0.13
157 19 0.17
158 2 0.02
159 76 0.68
ACGTcount: A:0.17, C:0.25, G:0.34, T:0.24
Consensus pattern (156 bp):
GGACCGAGGGTTGTGCAGTAGGATCGGTAGCACGCAGGGGGACTGGGTCGATCCCCGACTTACGC
ATTATGCCTCTCTGACTGGCTCAGTGCCCACACGCCCGTTTCGTAGGTTGACTTAGGCATAGGGA
GTTAATTCCATGTCAAAGCCCCAGTC
Found at i:17602843 original size:159 final size:156
Alignment explanation
Indices: 17602476--17602859 Score: 375
Period size: 159 Copynumber: 2.4 Consensus size: 156
17602466 AAGCATATGG
* * * *
17602476 AGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGCAGTAGGATCGGTAGCATGC--A
1 AGTTAATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGGGCAGTAGGATCGGTAGCA-GCAAA
* * * * *
17602539 GGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTTTCTGGCTGGCTGAGTGCCCACACGCC
64 GGGGGACTGGGTCGATCCCCGACTTACGCATTATGCCTCTCTGACTGGCTCAGTGCCCACACGCC
* * ***
17602604 CGTTTCGTGGGTTGGCTTAGGCATAGGG
129 CGTTTCGTAGGTTGACTTAGGCATACAA
* ** * *
17602632 AGTTAATTCCATGTCAAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGATCGGTAGCACGCA
1 AGTTAATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTG-GGCAGTAGGATCGGTAGCA-GCA
* **
17602696 AAGGGGGA-TCGGG-CTGATCCCCGACTTGCGCATTATGCCTCTCTGACTGGCTCAGTGCCTGCA
62 AAGGGGGACT-GGGTC-GATCCCCGACTTACGCATTATGCCTCTCTGACTGGCTCAGTGCCCACA
*
17602759 CGCTCGTTTCGTAGGTTGACTTAGGCATACAA
125 CGCCCGTTTCGTAGGTTGACTTAGGCATACAA
* * * * * *
17602791 AGTTTATTCCTAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAGCAGGATCGATAGCA-CAAA
1 AGTTAATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTG-GGCAGTAGGATCGGTAGCAGCAAA
17602855 GGGGG
64 GGGGG
17602860 GGATCGAGTC
Statistics
Matches: 183, Mismatches: 36, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
155 3 0.02
156 26 0.14
157 30 0.16
158 5 0.03
159 118 0.64
160 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (156 bp):
AGTTAATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGGGCAGTAGGATCGGTAGCAGCAAAGG
GGGACTGGGTCGATCCCCGACTTACGCATTATGCCTCTCTGACTGGCTCAGTGCCCACACGCCCG
TTTCGTAGGTTGACTTAGGCATACAA
Found at i:17602874 original size:159 final size:157
Alignment explanation
Indices: 17602538--17602970 Score: 415
Period size: 159 Copynumber: 2.7 Consensus size: 157
17602528 GGTAGCATGC
* * * * *
17602538 AGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTTTCTGGCTGGCTGAGTGCCCACACGC
1 AGGGGGA-TCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACTGGCTGAGTGCCCGCACGC
* * * * * * * *
17602603 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCAAAGCCCCAGTCGGACCGAGG
65 TCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAAGCACCAGCCAGACCGAAG
* ** *
17602668 GTTGTGGCAGTGGGATCGGTAGCACGCAA
130 GTTGCGGCAGCAGGATCGATAGCAC-CAA
* * * * *
17602697 AGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCTGACTGGCTCAGTGCCTGCACGC
1 AGGGGGATCGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCTGACTGGCTGAGTGCCCGCACGC
* * * * *
17602762 TCGTTTCGTAGGTTGACTTAGGCATACAAAGTTTATTCC-TAGTCTAAG-ATCAGACCAGACCGA
65 TCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCAT-GTCTAAGCACCAG-CCAGACCGA
*
17602825 AGGTTGCGGTAGCAGGATCGATAGCA-CAA
128 AGGTTGCGGCAGCAGGATCGATAGCACCAA
** * * * *
17602854 AGGGGGGGATCGAGTCGATCCTTGGCTTGCACATTCTGCCTCTCT-AGCCGACTGAGCGCCCGCA
1 A--GGGGGATCG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGA-CTGGCTGAGTGCCCGCA
* * * *
17602918 CACTCATTTCGTGGGTTGGCTTAGGCATTCGAAGTTGATTCCATGTCTAAGCA
62 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAAGCA
17602971 TACGGAGTTC
Statistics
Matches: 219, Mismatches: 46, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 9 0.04
159 202 0.92
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
AGGGGGATCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACTGGCTGAGTGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAAGCACCAGCCAGACCGAAGG
TTGCGGCAGCAGGATCGATAGCACCAA
Found at i:17603276 original size:26 final size:26
Alignment explanation
Indices: 17603246--17603298 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17603236 GTTGACTTAG
17603246 GCATAC-GAAGTTCATCCCTAGTCTAA
1 GCATACAG-AGTTCATCCCTAGTCTAA
*
17603272 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
17603298 G
1 G
17603299 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:17609429 original size:26 final size:26
Alignment explanation
Indices: 17609391--17609443 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17609381 GTTGGCTTAG
*
17609391 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17609417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17609443 G
1 G
17609444 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17609802 original size:26 final size:26
Alignment explanation
Indices: 17609772--17609824 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17609762 GTTGACTTAG
17609772 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
17609798 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
17609824 G
1 G
17609825 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:17610266 original size:158 final size:157
Alignment explanation
Indices: 17609798--17610299 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 157
17609788 CCCAGTCTAA
* * * * * **
17609798 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCAAGGGTTACGAAAGCAGGATCGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTATGATAGCCGGATCGAC
* * * * * *
17609862 AGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCA-GACTGAGCG
65 AGCACGCAGGGGGGACTGAGCCGATCCTCGACTTGCGCATTATGCCTCTCC-G-ATGGCTGAGCG
*
17609926 CCCGCACGCCCATTTCGTGGGTT-AGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGA-CTTAG
* * * ** ** * * ** * * *
17609956 GTATAGGGAGTTCATTTCGTGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGTAG-CGAGACCGA
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGAACCAAGGGTTATGATAGCCG-GATCGA
* * * * *
17610019 CAACACGCAGAGGGGGA-TCAAGCCGATCCTC-AGCTTACGCATTATGCCTCTTCGATCGGCTCA
64 CAGCACGCAG-GGGGGACT-GAGCCGATCCTCGA-CTTGCGCATTATGCCTCTCCGAT-GGCTGA
* * * *
17610082 GTGCCCGCATGCTCGTTTCGTGGGTTGACTTAT
125 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
17610115 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTATGATAGCCGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTATGATAGCCGGATCGACA
* * * * *
17610180 GCACGTAGGGGGGACTGAGCCGATCCCCGACTTGCACATTTTGCCTCTCCGAATGGCTGAACGCC
66 GCACGCAGGGGGGACTGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCG-ATGGCTGAGCGCC
* * *
17610245 CGCACGCTCATTTCATTGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGACTTAG
17610273 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17610300 CATACAGAGT
Statistics
Matches: 262, Mismatches: 67, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
157 5 0.02
158 135 0.52
159 119 0.45
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTATGATAGCCGGATCGACA
GCACGCAGGGGGGACTGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGATGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:17610304 original size:26 final size:26
Alignment explanation
Indices: 17610273--17610325 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17610263 GTTGGCTTAG
*
17610273 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
17610299 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
17610325 G
1 G
17610326 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:17611024 original size:26 final size:26
Alignment explanation
Indices: 17610994--17611046 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17610984 GTTGACTTAG
*
17610994 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
17611020 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17611046 G
1 G
17611047 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17611324 original size:159 final size:155
Alignment explanation
Indices: 17611060--17611522 Score: 455
Period size: 159 Copynumber: 2.9 Consensus size: 155
17611050 GGACTAGACT
* ** * * * *
17611060 GAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGTACCGGGCCGATCCCTAGCTTACGCATT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGATCGGGCCGATCCC-GGCTTGCGCATT
* * *
17611125 CTGCCTCTCCGGCCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
65 CTGCCTCTCC-GTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
17611190 CATTCCATGTCTAAGCCCCACCCGAACC
129 CATTCCATGTCTAAGCCCCA-CCGAACC
* * *
17611218 GAGGGTTGTGGCAGCAGGA-CAGGCAGCACGTAGAGGGGGAAT-GGGCCGATCCACGGCTTGCGC
1 GAGGGTTGCGGCAGCAGGATC-GACAGCACATAG-GGGGG-ATCGGGCCGATCC-CGGCTTGCGC
* * * * * * *
17611281 ATTATGCCTCTCCGATCGGCTCAACACCCGTACGCTCGTTTCATGGTTTGACTTAGGCATACAGA
62 ATTCTGCCTCTCCG-TCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* * ** *
17611346 ATTCATTCC-TAGTCTAAGATCGGACCGGACC
126 GTTCATTCCAT-GTCTAAG-CCCCACCGAACC
* * * * *
17611377 GAGGGTTGCGGTAGCAGGATCGACAGCACATAGGGGGGATCGGGTCTGACCCCGACTTGGGCATT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGATCGGG-CCGATCCCGGCTTGCGCATT
* * * * ** *
17611442 CTACCTCTCCTGTCGGTTGAGCGCCTGCACGCTTATTTCGTGGGTTGGCTTAGGCATACGGAGTT
65 CTGCCTCTCC-GTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
*
17611507 CATTCCAAGTCTAAGC
129 CATTCCATGTCTAAGC
17611523 ATACAGAGTT
Statistics
Matches: 245, Mismatches: 48, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.01
158 109 0.44
159 128 0.52
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
GAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGATCGGGCCGATCCCGGCTTGCGCATTC
TGCCTCTCCGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCCACCGAACC
Found at i:17611509 original size:158 final size:155
Alignment explanation
Indices: 17611020--17611521 Score: 479
Period size: 158 Copynumber: 3.2 Consensus size: 155
17611010 CCCAGTCTAA
* * ** * *
17611020 GCATATGGAGTTCATTCCCAATCTAAGATCGGACTAGACTGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
17611085 GCACGCAGGGGGTACCGGGCCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACC
65 GCACGTAGGGGGGATCGGGCCGACCCCGA-CTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACC
*
17611150 CGCACACTCGTTTCATGGGTTGGCTTAG
128 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * *
17611178 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCACCCGAACCGAGGGTTGTGGCAGCAGGA-CAGG
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATC-GA
* * * * *
17611241 CAGCACGTAGAGGGGGAAT-GGGCCGATCCACGGCTTGCGCATTATGCCTCTCCGATCGGCTCAA
63 CAGCACGTAG-GGGGG-ATCGGGCCGA-CCCCGACTTGCGCATTCTGCCTCTCCG-TCGGCTGAG
* * *
17611305 CACCCGTACGCTCGTTTCATGGTTTGACTTAG
124 CACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
17611337 GCATACAGAATTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
17611402 GCACATAGGGGGGATCGGGTCTGACCCCGACTTGGGCATTCTACCTCTCCTGTCGGTTGAGCGCC
65 GCACGTAGGGGGGATCGGG-CCGACCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACC
* ** *
17611467 TGCACGCTTATTTCGTGGGTTGGCTTAG
128 CGCACGCTCGTTTCATGGGTTGGCTTAG
17611495 GCATACGGAGTTCATTCCAAGTCTAAG
1 GCATACGGAGTTCATTCC-AGTCTAAG
17611522 CATACAGAGT
Statistics
Matches: 272, Mismatches: 59, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 8 0.03
158 135 0.50
159 122 0.45
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGGGGGGATCGGGCCGACCCCGACTTGCGCATTCTGCCTCTCCGTCGGCTGAGCACCCGC
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17611531 original size:26 final size:26
Alignment explanation
Indices: 17611495--17611573 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
17611485 GTTGGCTTAG
*
17611495 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
17611521 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
17611547 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
17611573 G
1 G
17611574 ATCTGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:17612959 original size:26 final size:26
Alignment explanation
Indices: 17612909--17612961 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17612899 GTTGGCTTAG
*
17612909 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17612935 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17612961 G
1 G
17612962 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17614825 original size:158 final size:160
Alignment explanation
Indices: 17614412--17614854 Score: 411
Period size: 159 Copynumber: 2.8 Consensus size: 160
17614402 AGCGGGATTA
** * * * * *
17614412 ACAGCACACAGAGGGGGATCGGGCTGAT-CCCGAACTTGCGCATTATGCCTCTCCGACCGGCTGA
1 ACAGCACGTAGAGGGGGAACGGGCCGATCCCCG-GCTTGCGCATTATGCCTCTTCGACCTGCTGA
* * *
17614476 GCACCCACATGCCCGTTTTGTGGGTTGGCTTAGGCATA-GGTAGTTCATT-CCATGTCGAAGCCC
65 GCACCCACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCCATGTCGAAGCAC
* * ** *
17614539 CAGTCAGACAGAGGGTTGTGGTAGTGGGACCG
129 CAGCCAGACAGAGGGTTGCGACAGTAGGACCG
* * ** * * * * * *
17614571 ACCGTACGTAGAGGGGGAACGGGTGGATCCTCGGCTTGCGTATTATGCTTC-TCCAGCTGGCTCA
1 ACAGCACGTAGAGGGGGAACGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCT-GCTGA
* * * * *
17614635 GCACCCGA-ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-AT
65 GCACCC-ACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCGAAGCAC
*
17614697 CAGACCAGACCA-AGGGTTGCGACAGTAGGATCG
129 CAG-CCAGA-CAGAGGGTTGCGACAGTAGGACCG
* * * * * *
17614730 ACAGCACGTAG-GGTGGACCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTTCGATCTGTTGAG
1 ACAGCACGTAGAGGGGGAACGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCTGCTGAG
* *
17614794 CACCCACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTTATT-CCATGTCCAAGCA
66 CACCCACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCGAAGCA
17614855 TATGGAGTTC
Statistics
Matches: 223, Mismatches: 50, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 88 0.39
159 120 0.54
160 11 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
ACAGCACGTAGAGGGGGAACGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCTGCTGAG
CACCCACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCGAAGCACCA
GCCAGACAGAGGGTTGCGACAGTAGGACCG
Found at i:17615613 original size:696 final size:683
Alignment explanation
Indices: 17613595--17615621 Score: 1917
Period size: 696 Copynumber: 2.9 Consensus size: 683
17613585 CTCTGGTCGG
* *
17613595 CTGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* ** * * * * **
17613660 ATACATACTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGAGGCAACAGGATTGGCAGC
66 ATACATAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGCAGGA-TGAAAGC
* * * * * *
17613724 ACGC-AGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTTTCTGGCCGGCTGAGTGCTCGC
130 ACGCAAGGGGATCG-GCCGAT-CCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGC
* * * *
17613788 ACTCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGAACCTGCC-GAAT
193 AC-CCT-TTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGACCCAGCCAG-AC
* * * * * * *
17613852 CGAGGGTTGTGGCAGTGGGATCGGTAGCACACAGAGTGGGATCCGATTGATCCTCGGCTTGTGCA
254 CGAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCA
* * **
17613917 TTATGACTCTCCGGCCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAAAG
319 TTATGCCTCTCCGG-CGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* *
17613982 TTCATTCCCAGTCTAAGATCAGACCAA-ACCAAGGGTTGCAGCAGCAGGATCGATAGCACGCAGG
383 TTCATTCCCAGTCTAAGATCAGA-CAAGACCAAGGGTTG-A-CAGTAGGATCGATAGCACGTA-G
* * * * * * * *
17614046 GGGGACCAGGCTGATCCCCAGCTTACACATTCTGCCTCTCCGGTCGGTTGAGTGCCTGCACACTT
444 GGGGACCGGGCCGATCCCGA-CTTGCGCATTCTGCCTCTCCGGTCAGTTGAGTGCC-ACACACTC
* * * * *
17614111 GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCTCA
507 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGGAGTTCATTCCCA
* * * *
17614176 GTCTAAGATCGAACCAGACCGAGGGTTGTAGCAGCAGGACC-AGTAGCAGGATCGGTAGCACACA
572 GTCTAAGATCGGACCAGACCGAGGGTTGGA-CAGCAGG-CCTAGCAGCAGGATCGGCAGCACACA
* ** * * *
17614240 GAGGGGACCGAGCCGGTCCCCGGCCTGTGTATTCTACCTCTCCGACCGA
635 GAGGGGACAGAGCCGACCCCCGACCTGCGCATTCTACCTCTCCGACCGA
* * ** * * *
17614289 CTGAGTGCCCACACGCTCATTTCATGGGTTGGTTTAGGCATACAGAGTTCAT-TCCATGTTTAAG
1 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG
* * *** * ** * * * * * *
17614353 C---CCTAG-CCGGACCGAGGGT-TGTGGCAGTAGGACCGG-CAGCGGGAT-CGACAGCGGGATT
65 CATACATAGTTCATTCCCA--GTCT-AAG-ATTA-GACCGGACCGAGGGTTGCGACAGCAGGATG
* * *
17614411 AACAGCACACAGAGGGGGATCGGGCTGATCCCGAACTTGCGCATTATGCCTCTCCGACCGGCTGA
125 AA-AGCACGCA-A-GGGGATC-GGCCGATCCCG-ACTTGCGCATTCTGCCTCTCCGACCGGCTGA
** * * *
17614476 GCACCCACATGCCCGTTTT-GTGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCGAAGCCCC
185 GTGCCCGCA--CCC-TTTTCGTGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTCTAAGACCC
* * * * * * * * * *
17614540 AGTCAGACAGAGGGTTGTGGTAGTGGGACCGACCGTACGTAGAGGGGGAACGGGTGGATCCTCGG
246 AGCCAGACCGAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGG
* * * * *
17614605 CTTGCGTATTATGCTTCTCCAGCTGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGC
311 CTTGCGCATTATGCCTCTCCGGC-GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* *
17614670 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGTAGGATCGACAGC
375 ATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAGGGTT--GACAGTAGGATCGATAGC
* * * **
17614735 ACGTAGGGTGGACCGGGCCGATCCCCTG-CTTGCGCATTCTGCCTCTTCGATCTGTTGAGCACCC
438 ACGTAGGG-GGACCGGGCCGAT-CCC-GACTTGCGCATTCTGCCTCTCCGGTCAGTTGAG-TGCC
* * *
17614799 ACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCCAAGCATATGGAGTT
499 ACACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGGAGTT
* * * * *
17614864 CATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTATGG-TAGTAGGACTAGCAGCAGGATTGG
564 CATTCCCAGTCTAAGATCGGACCA-GACCGAGGG-T-TGGACAGCAGGCCTAGCAGCAGGATCGG
** * * * * * *
17614927 CAGCATGCAGGGGGGATAGGGCCGACCCCCGACTTGCGCATTCTATCTCTCC-ATCG-
626 CAGCACACAGAGGGGACAGAGCCGACCCCCGACCTGCGCATTCTACCTCTCCGACCGA
* **
17614983 GTAGAGCGCCCGCACGCTCATTTCGGGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 CT-GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* *
17615048 CATACAAAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGCAGGATCGAAAA
65 CATACATAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGCAGGAT-GAAAG
** * ** *
17615113 CACGCAAGCAAGATCTGGCCGATCCTTGACTCACGCATTCTGCCTCTCCGATC-GCTGAGTGCCC
129 CACGCAAG-GGGATC-GGCCGATCC-CGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
* *
17615177 GCACACCTTTTCGTGGGTTGGCTTAGGTATAGGAGTTCATTCCATGTCTAAGGCCCAGCCAGACC
191 GCAC-CCTTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGACCCAGCCAGACC
* * * *
17615242 GAGGGTTGTGGCAGCT-GGATTGGCAGCATGCAGAGGGGGATCGGGCCGATCC-CTGACTTGCGC
255 GAGGGTTGTGGCAG-TGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTC-GGCTTGCGC
* * * *
17615305 ATTATCCCTCTCCGGTCGGCTCAGCGCCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGG
318 ATTATGCCTCTCCGG-CGGCTCAGCG-CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
* *
17615370 AGTTCATTCCCAATCTAAGATC-GA-AATGGACCGAGGGTCATGACAGTAGGATCGATAGCACGT
381 AGTTCATTCCCAGTCTAAGATCAGACAA--GACCAAGGGT--TGACAGTAGGATCGATAGCACGT
* * *
17615433 AAGGGGGTTACTGGGCC-AGTGCTCGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGTGCTCAC
442 -AGGGGG--ACCGGGCCGA-T-CCCGACTTGCGCATTCTGCCTCTCCGGTCAGTTGAGTGC-CAC
* *
17615497 ACACTCGTTTTGTGGGTTGGCATAGGCATACAGAGTTCATTCCATGTCCAAGCATACGGAGTTCA
501 ACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGGAGTTCA
* * * *
17615562 TTCCCAGTCTAAGTTTGGACCAGATCGAGGGTTGCGACAGCAGGCCTAGCAGCAAGATCG
566 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-GACAGCAGGCCTAGCAGCAGGATCG
17615622 TCTGCTCGTA
Statistics
Matches: 1058, Mismatches: 214, Indels: 120
0.76 0.15 0.09
Matches are distributed among these distances:
690 1 0.00
691 5 0.00
692 4 0.00
693 120 0.11
694 173 0.16
695 101 0.10
696 602 0.57
697 37 0.03
698 11 0.01
699 4 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (683 bp):
CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACATAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGCAGGATGAAAGCA
CGCAAGGGGATCGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACC
CTTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGACCCAGCCAGACCGAGGGT
TGTGGCAGTGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCC
TCTCCGGCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACAAGACCAAGGGTTGACAGTAGGATCGATAGCACGTAGGGGGACCGGGCC
GATCCCGACTTGCGCATTCTGCCTCTCCGGTCAGTTGAGTGCCACACACTCGTTTTGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CAGACCGAGGGTTGGACAGCAGGCCTAGCAGCAGGATCGGCAGCACACAGAGGGGACAGAGCCGA
CCCCCGACCTGCGCATTCTACCTCTCCGACCGA
Found at i:17615912 original size:26 final size:26
Alignment explanation
Indices: 17615876--17615928 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17615866 TTTAGCTTAG
* *
17615876 GCATACGAAGTTC-TTTCCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
17615902 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
17615928 G
1 G
17615929 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:17616635 original size:26 final size:26
Alignment explanation
Indices: 17616599--17616650 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17616589 TTGACTTAGC
*
17616599 CATATGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
17616625 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
17616651 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:17616987 original size:158 final size:157
Alignment explanation
Indices: 17616624--17616996 Score: 419
Period size: 158 Copynumber: 2.4 Consensus size: 157
17616614 CCCAGTCTAA
** * *
17616624 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGCAGGACCGACA
* * * *
17616689 GCACGCAAGGGGGACCTGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
65 GCACGCAAGGGGGACCTGACCGATCCTCGACTTACGCATTATGCCTCTCCGACCGACTCAGCGCC
* *
17616754 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCCCGTTTCATGGGTTGACTTAG
* ** * * * *
17616782 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCAGCT-GGAGCGACGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGATCGGA-CGAGGGTTGTGGCAGCAGGACCGA
* * * *
17616845 CAGCACGCAGAGGGGGATC-GATCGATCCTCGACTTACGCATTATGCCTCTCCGACTGGCTCAGC
63 CAGCACGCA-AGGGGGACCTGACCGATCCTCGACTTACGCATTATGCCTCTCCGACCGACTCAGC
* *
17616909 GCCTGCACGCTCGTTTCATGGGTTGACTTAG
127 GCCCGCACGCCCGTTTCATGGGTTGACTTAG
* * * * *
17616940 GCATATGGAGTTCATTCCCAGTGTAAGATCAGATCAGACTGAGGGTTGTGGTAGCAG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGAC-GAGGGTTGTGGCAGCAG
17616997 TACCAGTAGC
Statistics
Matches: 175, Mismatches: 34, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
157 8 0.05
158 153 0.87
159 14 0.08
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACGAGGGTTGTGGCAGCAGGACCGACAG
CACGCAAGGGGGACCTGACCGATCCTCGACTTACGCATTATGCCTCTCCGACCGACTCAGCGCCC
GCACGCCCGTTTCATGGGTTGACTTAG
Found at i:17617508 original size:26 final size:26
Alignment explanation
Indices: 17617478--17617527 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17617468 GGCTTAGGCA
17617478 TACGGAGTTCATT-CCATGTCTAAGTG
1 TACGGAGTTCATTCCCA-GTCTAAGTG
17617504 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17617528 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGTG
Found at i:17618139 original size:26 final size:26
Alignment explanation
Indices: 17618103--17618155 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17618093 GTTGGCTTAG
**
17618103 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17618129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17618155 G
1 G
17618156 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17618662 original size:170 final size:171
Alignment explanation
Indices: 17618347--17618742 Score: 397
Period size: 170 Copynumber: 2.3 Consensus size: 171
17618337 GCAGCGAGAC
* * * * * * * *
17618347 CGACAGCACGTAGAGAGGGATCGAGCCGATCCTCGGCTTAG-GCATTATGCCTTTCCGACCAGCT
1 CGACAGCACGCAGAGGGGGATCGAGCTGATCCTCGACTT-GCGCATTATGCCTCTCTGGCCGGCT
* * * * * * *
17618411 CAGCACCC-GCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGAT
65 GAGCACCCAG-ACGCTCATTTCATGGGTTGACCTAGGCATACAGAGTTCATTCCCAGTCTAAGAC
* * * * * *
17618475 CGGACCGGATTGAGGGTTGCGGTAGTAGTACCAACAGCAGGAT
129 CGAACCAGATCGAGGGTTACGGGAGTAGGACCAACAGCAGGAT
* * * *
17618518 CGACAGCACGCAG-GGGGGATCG-GATCGATCCTCGGCTTGCGTATTCTGCCTCTCTGGCCGGCT
1 CGACAGCACGCAGAGGGGGATCGAGCT-GATCCTCGACTTGCGCATTATGCCTCTCTGGCCGGCT
* *
17618581 GAGCACCCAGACGCTCATTTCATGGGTTGGCCTAGGCATACAGAGTTCATT-CCATGTCTAAGCC
65 GAGCACCCAGACGCTCATTTCATGGGTTGACCTAGGCATACAGAGTTCATTCCCA-GTCTAAGAC
* * *** **
17618645 CTAATCAGATCGAGGGTTACGGGAGTAGGACTGGCAGTGGGAT
129 CGAACCAGATCGAGGGTTACGGGAGTAGGACCAACAGCAGGAT
* *
17618688 TGACAGCACGTAGAGGGGGATCGAGCTGATCCTCGACTTGCGCATTATGCCTCTC
1 CGACAGCACGCAGAGGGGGATCGAGCTGATCCTCGACTTGCGCATTATGCCTCTC
17618743 CGGCTGACCT
Statistics
Matches: 181, Mismatches: 38, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
169 5 0.03
170 127 0.70
171 47 0.26
172 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (171 bp):
CGACAGCACGCAGAGGGGGATCGAGCTGATCCTCGACTTGCGCATTATGCCTCTCTGGCCGGCTG
AGCACCCAGACGCTCATTTCATGGGTTGACCTAGGCATACAGAGTTCATTCCCAGTCTAAGACCG
AACCAGATCGAGGGTTACGGGAGTAGGACCAACAGCAGGAT
Found at i:17618851 original size:25 final size:26
Alignment explanation
Indices: 17618800--17618851 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17618790 GTTGACTTAG
17618800 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17618826 GCATATGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17618851 G
1 G
17618852 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17619123 original size:184 final size:183
Alignment explanation
Indices: 17618780--17619194 Score: 485
Period size: 184 Copynumber: 2.3 Consensus size: 183
17618770 CTCGCACGCT
* * *
17618780 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCC
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCC
* * * * * * * * *
17618844 AGTCTAAGATCAGATCGGATCAAGCGTTGCGATAGAAGGTTCGGCAGCACGTAAGGGGGATCGGG
65 AGTCTAAGATCAGACCAGACCAAGCGTTACGACAGAAGGATCGGCAGCACGCAAGGGGGACCGGC
** * * * **
17618909 CTGATTGTCAGCTTACGCATTTTGCCTCTCCG-GCTAGCTTAGCACCCACATGCC
130 CTGATCCTCAGCTTACGCATTTTACCTCTCCGATC-AGCTGAGCACCCACACACC
* *
17618963 CGTTTCGTGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCC
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATT-CC
* * * *
17619028 AGTCTAAGATCTGACCAGACCAAGGGTTACGACAGTAGGATCGGCAGCACGCAAGGGGGCCCAGG
65 AGTCTAAGATCAGACCAGACCAAGCGTTACGACAGAAGGATCGGCAGCACGCAAGGGGGACC-GG
* * ** *
17619093 CCT-ATCCTCGGCTTACGCATTTTACCTCTCCGATCGGCTGAGGGCCCGCACACC
129 CCTGATCCTCAGCTTACGCATTTTACCTCTCCGATCAGCTGAGCACCCACACACC
* *
17619147 CATTTCGTGGGTTGGCTTACGCATAGGGAGTTCATTCCATGTCTAAGC
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17619195 CCTAGCCAGA
Statistics
Matches: 194, Mismatches: 34, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
182 3 0.02
183 53 0.27
184 133 0.69
185 5 0.03
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.26
Consensus pattern (183 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCA
GTCTAAGATCAGACCAGACCAAGCGTTACGACAGAAGGATCGGCAGCACGCAAGGGGGACCGGCC
TGATCCTCAGCTTACGCATTTTACCTCTCCGATCAGCTGAGCACCCACACACC
Found at i:17619394 original size:159 final size:158
Alignment explanation
Indices: 17619009--17619682 Score: 511
Period size: 159 Copynumber: 4.2 Consensus size: 158
17618999 CCATGTCTAA
* ** * * *
17619009 GCATATGGAGTTCATTCCCAGTCTAAGATCT-GACCAGACCAAGGGTTACGACAGTAGGATCGGC
1 GCATATGGAGTTCATTCCCAGTCTAAGAT-TAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * * * * * * ** *
17619073 AGCACGCA-AG-GGGGCCCAGGCCTATCCTCGGCTTACGCATTTTACCTCTCCGATCGGCTGAGG
65 AGCACACAGAGAGAGGATC-GGGCGATCC-CGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGC
* * * * *
17619136 GCCCGCACACCCATTTCGTGGGTTGGCTTAC
128 GCCCGCACGCTCATTTCATGGGTTGACTTAG
* **
17619167 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCAGCAGGA-CTG
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATTAGACCAGACCGAGGGTTGTGGCAGCAGGATC-G
* * * * *
17619229 ATAGCACACAGAGAG-GGATCGGGTCGATCCCTGACTTACGCATTATGCCTTTCCGGCCAGCTCA
63 ACAGCACACAGAGAGAGGATCGGG-CGATCCC-GACTTGCGCATTATGCCTCTCCGGCCGGCTGA
*
17619293 GCGCCCGTACGCTCATTTCATGGGTTGACTTAG
126 GCGCCCGCACGCTCATTTCATGGGTTGACTTAG
** * ** *
17619326 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGATAGCAAGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
** * * ** * * * * * *
17619391 GCACGTAG-GGGAGGACCAGACCGGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCA
66 GCACACAGAGAGAGGATC-GGGCGAT-CCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
* ** *
17619455 CCCGCATGCTTGTTTCATGGGTTGCCTTAG
129 CCCGCACGCTCATTTCATGGGTTGACTTAG
* * *
17619485 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAAGGTTGTGGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* *
17619550 GCGGGATCGACAGCACGCAAAGTAGGATCGGGCTGATCCCCAGCTTGTGCATTATGCCTCTCCGG
66 GC---A-C-ACAG-A-G---AG-AGGATCGGGC-GATCCCGA-CTTGCGCATTATGCCTCTCCGG
* *
17619615 TCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAG
118 CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
17619656 GCATATGGAGTTCA-TCACCAGTCTAAG
1 GCATATGGAGTTCATTC-CCAGTCTAAG
17619683 CATATGGAGT
Statistics
Matches: 398, Mismatches: 89, Indels: 45
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.01
158 60 0.15
159 229 0.58
160 9 0.02
162 1 0.00
163 1 0.00
164 2 0.01
167 1 0.00
170 8 0.02
171 83 0.21
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACACAGAGAGAGGATCGGGCGATCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGACTTAG
Found at i:17619686 original size:26 final size:26
Alignment explanation
Indices: 17619656--17619708 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17619646 GTTGACTTAG
*
17619656 GCATATGGAGTTCA-TCACCAGTCTAA
1 GCATATGGAGTTAATTC-CCAGTCTAA
17619682 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATATGGAGTTAATTCCCAGTCTAA
17619708 G
1 G
17619709 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTAATTCCCAGTCTAA
Found at i:17620563 original size:26 final size:26
Alignment explanation
Indices: 17620534--17620586 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17620524 GTTGACTTAG
*
17620534 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
17620560 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
17620586 G
1 G
17620587 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Done.