Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 153 of 402
Found at i:17621023 original size:26 final size:26
Alignment explanation
Indices: 17620993--17621045 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17620983 GTTGACTTAG
*
17620993 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTACCA-GTCTAA
17621019 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
17621045 G
1 G
17621046 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:17621374 original size:171 final size:170
Alignment explanation
Indices: 17621081--17621387 Score: 388
Period size: 171 Copynumber: 1.8 Consensus size: 170
17621071 AGCAGGACCA
* * * * * * *
17621081 GCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGATCCTCTGCTTGCGCATTCTGCCTCTTC
1 GCAGCAGGATCGACAGCACATAGGGGGGATCAGGCTGATCCTCCGCTTACGCATTATGCCCCTCC
** * * * * *
17621146 GGTTGGCTAAGTGCCCGCACTCTCATTTCGTGGGTTGGCTTAGGAATACGGAGTTCAT-TCCATG
66 GCCTGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGAATACGGAGTTCATCCCCA-G
17621210 TCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACTG
130 TCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACTG
17621251 GCAGCAGGATCGACAGCACATAGAAGGGGG-TCAGGCTGAT-CTCCGACTTACGCATTATGCCCC
1 GCAGCAGGATCGACAGCACATAG--GGGGGATCAGGCTGATCCTCCG-CTTACGCATTATGCCCC
* * *
17621314 TCCAGCCT-GCTGAGCGCCCGCACACTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
63 TCC-GCCTGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGAATACGGAGTTCATCCC
17621378 CAGTCTAAGC
127 CAGTCTAAGC
17621388 GTACGAAGTT
Statistics
Matches: 115, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
170 26 0.23
171 79 0.69
172 10 0.09
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (170 bp):
GCAGCAGGATCGACAGCACATAGGGGGGATCAGGCTGATCCTCCGCTTACGCATTATGCCCCTCC
GCCTGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGAATACGGAGTTCATCCCCAGT
CTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACTG
Found at i:17621397 original size:26 final size:26
Alignment explanation
Indices: 17621363--17621412 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17621353 GACTTAGGCA
*
17621363 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGAAGTTCATCCCCAGTCTAAGCG
* *
17621389 TACGAAGTTTATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
17621413 ATCAGACCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCG
Found at i:17621890 original size:26 final size:26
Alignment explanation
Indices: 17621860--17621915 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
17621850 TGGGTTGGCT
* *
17621860 TAAGCATGCGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
*
17621886 TAAGCGTACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17621912 TAAG
1 TAAG
17621916 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17622094 original size:26 final size:26
Alignment explanation
Indices: 17622058--17622110 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17622048 GTTGGCTTAG
17622058 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17622084 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17622110 G
1 G
17622111 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17622109 original size:195 final size:196
Alignment explanation
Indices: 17621791--17622354 Score: 636
Period size: 195 Copynumber: 2.8 Consensus size: 196
17621781 GGACTGGGCC
** * * *
17621791 GATCCCCAGC-TAGCGCATTCTGCCTCTCCGATAGGCTGAGTGCCCGCACTCTCATTTCATGGGT
1 GATCCCCAGCTTA-CGCATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCTCATTTCGTGGGT
* * * *
17621855 TGGCTTAAGCATGCGGAGTTCATTCCATGTCTAAGCGTACAGAGTTCATTCCCAGTCTAAGATCA
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
17621920 GATCGGACCAAGGGTTGTGGCAGTAGGACCAGCAGCAAGATC-GACAGCACGTA-GGGGGATCGG
130 GATCGGACCAAGGGTTGCGACAGCAGGACCAACAGCAAGATCAG-CAGCACATAGGGGGGATCGG
*
17621983 GTT
194 GTG
* * * * * *
17621986 GATCCTC-GACTTACGCATTCTGCCTCTTCGACCGACTGAGCGGCCACACGCTCCTTTCGTGGGT
1 GATCCCCAG-CTTACGCATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCTCATTTCGTGGGT
*
17622050 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
17622115 GATCAGACCAAGGGTTGCGACAGCAGGACCAATAGCAGGATCAGTAGCACATAGGGGGGATTGGG
130 GATCGGACCAAGGGTTGCGACAGCAGGACCAACAGCAAGATCAGCAGCACATAGGGGGGATCGGG
17622180 TG
195 TG
* * *
17622182 GATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCTCCGATCAGTTGAGTGCCCGCACGCTCGTTTC
1 GATCCCCAGCTTACGCATTCTGCCTCTCC-G--ACCGA-C---TGAGTGCCCGCACGCTCATTTC
* * * *
17622247 GTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTGTAAGCATACGGAGTTCATTCCCAGTCT
59 GTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
17622311 TAGAT-AGAACCGGACCGAGGGTTGCGACAGCAGGATCAACAGCA
123 AAGATCAG-ATCGGACCAAGGGTTGCGACAGCAGGACCAACAGCA
17622355 CGCAAGGGGG
Statistics
Matches: 309, Mismatches: 46, Indels: 20
0.82 0.12 0.05
Matches are distributed among these distances:
194 1 0.00
195 150 0.49
196 38 0.12
197 2 0.01
199 4 0.01
200 1 0.00
202 2 0.01
203 108 0.35
204 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (196 bp):
GATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ATCGGACCAAGGGTTGCGACAGCAGGACCAACAGCAAGATCAGCAGCACATAGGGGGGATCGGGT
G
Found at i:17622619 original size:159 final size:158
Alignment explanation
Indices: 17622434--17622789 Score: 373
Period size: 158 Copynumber: 2.2 Consensus size: 158
17622424 CCGTTTTGGT
* * * **
17622434 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAGTC-GGA-CTGAGGGTTGTG
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA--CCAGACTAGATC-GAGGGTTACG
* * * * *
17622496 GCAGCAGGACCGACAGCATGCAGAGGGGCACCGGGTC-GATCCCCGGCTTGCGTATTATGCCTCT
63 GCAGCAGGACCGACAGCACGCA-AGGGGCACCGGGCCTG-TCCCCGACTTACGCATTATGCCTCT
* * *
17622560 CC-AGCCAGCTCAGCGCTCGAACGTTTGTTTCAC
126 CCGA-CCAGCTCAGCGCACGAACGCTCGTTTCAC
* * *
17622593 GGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTAGATCGAGGGTTACGGT
1 GGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACTAGATCGAGGGTTACGGC
* * * * *
17622657 AGCAGGATCGACAGCACGCAAGGGGGACTGGGCCTGTCCCCTACTTACGCATTCTGCCTCTCCGA
65 AGCAGGACCGACAGCACGCAAGGGGCACCGGGCCTGTCCCCGACTTACGCATTATGCCTCTCCGA
* * * * *
17622722 TCAGCTGAGCGCACGGAGGCTCGTTTCAT
130 CCAGCTCAGCGCACGAACGCTCGTTTCAC
17622751 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17622790 CATATGGAGT
Statistics
Matches: 163, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
157 3 0.02
158 92 0.56
159 63 0.39
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACTAGATCGAGGGTTACGGCA
GCAGGACCGACAGCACGCAAGGGGCACCGGGCCTGTCCCCGACTTACGCATTATGCCTCTCCGAC
CAGCTCAGCGCACGAACGCTCGTTTCAC
Found at i:17622793 original size:26 final size:26
Alignment explanation
Indices: 17622763--17622815 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17622753 GTTGGCTTAG
17622763 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
17622789 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17622815 G
1 G
17622816 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17623082 original size:273 final size:273
Alignment explanation
Indices: 17622587--17623092 Score: 680
Period size: 273 Copynumber: 1.9 Consensus size: 273
17622577 CGAACGTTTG
* *
17622587 TTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTT
1 TTTCACGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACTAGATCGAGGGTT
* * * * * * * *
17622652 ACGGTAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCTGTCCCCTACTTACGCATTCTGCCTC
66 ACGGCAGCAGGATCAACAGCACACAAGGGGGACCGAGCCTGGCCCATACTTACGCATTCTACCTC
* * ** *
17622717 TCCGATCAGCTGAGCGCACGGAGGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
131 TCCGACCAGCTGAGCGCACGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* *
17622782 TGTCTAAGCATATGGAGTTCGTTCCCAGTCTAAGATCGGATCGGATCGAGGGTAGCGGCAGCAGG
196 TGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTAGCGGCAGCAGG
17622847 ACCAGCATGCTCA
261 ACCAGCATGCTCA
* ** *
17622860 TTTCATGGGTTGACTTAGGTGTACAGAGTTCAATCCCAGTCTAAGATCGGACCTA-A-CTGAGGG
1 TTTCACGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGA-CTAGATC-GAGGG
* * * * **
17622923 TTACGGCCGTAGGATCAACAGCACAC-AGGAGGGACCGAGCC-GGGCCATGGCTTGTGCATTCTA
64 TTACGGCAGCAGGATCAACAGCACACAAGG-GGGACCGAGCCTGGCCCAT-ACTTACGCATTCTA
*
17622986 CCTCTCCGACCGGCTGAGCGC-CTGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
127 CCTCTCCGACCAGCTGAGCGCAC-GCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
17623050 TTCCATGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
191 TTCCATGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
17623093 AACCAGACCG
Statistics
Matches: 200, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
272 9 0.05
273 188 0.94
274 3 0.01
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (273 bp):
TTTCACGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACTAGATCGAGGGTT
ACGGCAGCAGGATCAACAGCACACAAGGGGGACCGAGCCTGGCCCATACTTACGCATTCTACCTC
TCCGACCAGCTGAGCGCACGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTAGCGGCAGCAGG
ACCAGCATGCTCA
Found at i:17623877 original size:158 final size:156
Alignment explanation
Indices: 17623431--17623932 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 156
17623421 CCCAGTCTAA
* * * * **
17623431 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGGTGCGATAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* ** * * * * * *
17623496 GCATGCTGGGGGGACCGAGCTGGTCCCCGACTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACC
66 GCATACAAGGGGGACTGGGCTGATCCCCG-CTTGTGCATTCTGCCTCTCCGTC-AGCTGAGCGCC
* * * * *
17623561 TGCACGCCCGTTTCATGGTTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * * * *
17623589 GCATAGGGAGTTCATT-CAATGTCTGAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * * * *
17623652 CAGCACGTA-GAGGGGCATTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCAGCTCAG
64 CAGCA--TACAAGGGGGACTGGGCTGATCCCC-GCTTGTGCATTCTGCCTCTCCG-TCAGCTGAG
* *
17623716 CGCCCGAACGCTGGTTTCGTGGGTTGACTTAG
125 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
17623748 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* *
17623813 GCATACAAGGGGGACTGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGTCCGACTGAGCGCC
66 GCATACAAGGGGGACTGGGCTGATCCCC-GCTTGTGCATTCTGCCTCTCCGTCAG-CTGAGCGCC
17623878 CGCACGCTCGTTTCGTGGGTTGACTTAG
129 CGCACGCTCGTTTCGTGGGTTGACTTAG
17623906 GCATACGGAGTTCA-TCCTCAGTCTAAG
1 GCATACGGAGTTCATTCCT-AGTCTAAG
17623933 CATACGGAGT
Statistics
Matches: 274, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 11 0.04
158 143 0.52
159 115 0.42
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCATACAAGGGGGACTGGGCTGATCCCCGCTTGTGCATTCTGCCTCTCCGTCAGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17624205 original size:196 final size:197
Alignment explanation
Indices: 17623855--17624244 Score: 509
Period size: 196 Copynumber: 2.0 Consensus size: 197
17623845 TGCGCATTCT
*
17623855 GCCTCTCCGTCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * ** * *
17623920 TCCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGGATCGGACTGAGGGTTACGATA
66 TCCTCAGTCAAAGCATACAGAGTTCATTCCCAATCGAAGATCGGATCGGACCAAAGGTTACGACA
* *
17623985 GTAGGACCAGCAGCACGCAGGGGGGACTC-AGCCGAT-CCCTGCTTGCGCATTCTACCTCTCCGA
131 GTAGGACCAGCAGCACGCAGGGGGGA-TCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGA
17624048 CTG
195 CTG
* *
17624051 GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
17624116 TCCTCAGTCAAAGCATACAGAGTTCTTTCCCAATCTAATATCGGATCAGG-CCAAAGGTTGCGGC
66 TCCTCAGTCAAAGCATACAGAGTTCATTCCCAATCGAAGATCGGATC-GGACCAAAGGTTACGAC
* * * * * * *
17624180 AGTAGTATC-GATAGCACGTAGGGGGGATCGAGCTGTTCCCCGGCTTACGCATTCTGCCTCTCCG
130 AGTAGGACCAG-CAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCG
17624244 A
194 A
17624245 TCGGCTAAGC
Statistics
Matches: 166, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
195 3 0.02
196 137 0.83
197 26 0.16
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (197 bp):
GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCTCAGTCAAAGCATACAGAGTTCATTCCCAATCGAAGATCGGATCGGACCAAAGGTTACGACA
GTAGGACCAGCAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGAC
TG
Found at i:17624409 original size:705 final size:698
Alignment explanation
Indices: 17623320--17624637 Score: 1657
Period size: 705 Copynumber: 1.9 Consensus size: 698
17623310 GGATCGAGCT
* * * *
17623320 GATCCCTGGCTTGCGTATTATGCCTCTCCGGCCGGCCGCTCCGACCAACTGAGTGCCCGCACGCT
1 GATCCCTGGCTTGCGCATTATACCTCTCCGACCGGCCGCTCCGACCAACTGAGCGCCCGCACGCT
* * * *
17623385 TGTTTCATGGGTTGACTTAGGCATCCAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
66 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCAAAGCATACAGAGTTCATTCCC
* * * * * * *
17623450 AGTCTAAGATCGGACCGGACCGAGGGGTGCGATAGCAGGATCGGTAGCATGCTGGGGGGACCGAG
131 AATCTAAGATCGGACAGGACCAAAGGGTGCGACAGCAGGATCGATAGCACGCTGGGGGGACCGAG
** * *
17623515 CTGGTCCCCGACTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACCTGCACGCCCGTTTCATGGT
196 CTGGTCCCCGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCGTTTCATGGG
* *
17623580 TTGGCTTAGGCATAGGGAGTTCATTCAATGTCTGAGCCCCAGCCAGATCGAGGGTTGTGGCAGCA
261 TTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCA
**** *
17623645 GGACCGACAGCACGTAGAGGGGCATTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCA
326 GGACCGACAGCACGTAGAGGGGCACCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CA
* * * * * *
17623710 G-CTCAGCGCCCGA-ACGCTGGTTTCGTGGGTTGACTTAGGCATA-TGGAGTTCATTCCTAGTCT
390 GACTCAACGCCC-ATACGCTCGTTTCATGGGTTGACTTAGGCATACAGG-GTTAATTCCCAGTCT
* ** * * ** *
17623772 AAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCATACAAGG-GGGACTGGGCTGA
453 AAGATCAGACCAGACCGAGGGTTGCGCCAGTAAGATCGACAGCACAC-AGGAGGGACCAGGCCGA
* * *
17623836 TCCCCAGCTTGCGCATTCTGCCTCTCCG-TCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
517 TCCCCAGCTTACGCATTCTGCCTCTCCGAT-CGACTAAGCGCCCGCACGCTCGTTTCATGGGTTG
17623900 ACTTAGGCATACGGAGTTCA-TCCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGG
581 ACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGG
17623964 ATCGGACTGAGGGTTACGATAGTAGGACCAGCAGCACGCAGGGGGGACTCAGCC
645 ATCGGACTGAGGGTTACGATAGTAGGACCAGCAGCACGCAGGGGGGACTCAGCC
* * * **
17624018 GATCCCT-GCTTGCGCATTCTACCTCTCCGACTGGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
1 GATCCCTGGCTTGCGCATTATACCTCTCCGACCGGCCGCTCCGACCAACTGAGCGCCCGCACGCT
* ** * *
17624082 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCTCAGTCAAAGCATACAGAGTTCTTTCCC
66 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCAAAGCATACAGAGTTCATTCCC
* * * * * *
17624147 AATCTAATATCGGATCAGG-CCAAAGGTTGCGGCAGTAGTATCGATAGCACG-TAGGGGGGATCG
131 AATCTAAGATCGGA-CAGGACCAAAGGGTGCGACAGCAGGATCGATAGCACGCT-GGGGGGACCG
* * * *
17624210 AGCTGTTCCCCGGCTTACGCATTCTGCCTCTCCGA-TCGGCTAAGCGCCCGCACGCCCGTACGCC
194 AGCTGGTCCCCGACTTACGCATTCTGCCTCTCCGACT-GGCT----G--AGCA--CCCGCACGCC
** * **
17624274 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
250 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGG
* * * *
17624339 TTGTGGCAGCGGGACCGACGGCACGTAGAGGGGGACCAAGCTGATCCCCGGCTTGCGCATTATGC
315 TTGTGGCAGCAGGACCGACAGCACGTAGAGGGGCACCAAGCCGATCCCCGGCTTGCGCATTATGC
*
17624404 CTCTCCGACTGACTCAACGCCCATACGCTCGTTTCATGGGTTGACTTAGGCATACAGGGTTAATT
380 CTCTCCGACAGACTCAACGCCCATACGCTCGTTTCATGGGTTGACTTAGGCATACAGGGTTAATT
* * * * ** *
17624469 CCCAGTCTAAGATCGGATCAGATCGAGGGTTGTGCCAGTAAGATCGGTAGCACGCAGGAGGGACC
445 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCCAGTAAGATCGACAGCACACAGGAGGGACC
* * *
17624534 AGGCCGATCCTCAGCTTACGCATTCTGCCTCTCCGATCGACTAAGCGCCTGCACGCTTGTTTCAT
510 AGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGACTAAGCGCCCGCACGCTCGTTTCAT
*
17624599 GGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
575 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17624638 ACCGAGGGTT
Statistics
Matches: 519, Mismatches: 84, Indels: 27
0.82 0.13 0.04
Matches are distributed among these distances:
696 2 0.00
697 183 0.35
698 10 0.02
701 1 0.00
703 3 0.01
704 6 0.01
705 308 0.59
706 6 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (698 bp):
GATCCCTGGCTTGCGCATTATACCTCTCCGACCGGCCGCTCCGACCAACTGAGCGCCCGCACGCT
CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCAAAGCATACAGAGTTCATTCCC
AATCTAAGATCGGACAGGACCAAAGGGTGCGACAGCAGGATCGATAGCACGCTGGGGGGACCGAG
CTGGTCCCCGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCGTTTCATGGG
TTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCA
GGACCGACAGCACGTAGAGGGGCACCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAG
ACTCAACGCCCATACGCTCGTTTCATGGGTTGACTTAGGCATACAGGGTTAATTCCCAGTCTAAG
ATCAGACCAGACCGAGGGTTGCGCCAGTAAGATCGACAGCACACAGGAGGGACCAGGCCGATCCC
CAGCTTACGCATTCTGCCTCTCCGATCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGGATCGGA
CTGAGGGTTACGATAGTAGGACCAGCAGCACGCAGGGGGGACTCAGCC
Found at i:17624984 original size:26 final size:26
Alignment explanation
Indices: 17624954--17625006 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17624944 GTTGACTTAG
* *
17624954 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
*
17624980 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
17625006 G
1 G
17625007 AACGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCACTCTAA
Found at i:17625485 original size:26 final size:26
Alignment explanation
Indices: 17625455--17625507 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17625445 GTTGGCTTAG
*
17625455 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
*
17625481 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
17625507 G
1 G
17625508 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:17625855 original size:159 final size:158
Alignment explanation
Indices: 17625684--17625985 Score: 356
Period size: 158 Copynumber: 1.9 Consensus size: 158
17625674 TAAGCCCCAG
* * * * **
17625684 CCGGACTGAGGGTTATGGCAGCGGGACCGATAGTACGCAGAGGGGGACCTG-GTCGATCCCTGGC
1 CCGGACCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGA-GGGGACC-GAGTCGATCCCCAGC
* * * *
17625748 TTGCGCATTATGCCTCTCCGGTCGGCTCAGTACCCGAATGCTCATTTCGTGGGTT-GACTTAGGC
64 TTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCATTTCGTAGGTTAG-CTTAGGC
* *
17625812 TTACGGAGTTCATTCCTAGTTTAAGATAAGA
128 ATACAGAGTTCATTCCTAGTTTAAGATAAGA
* * **
17625843 CCGGACCGAGGGTTGTGGCAGTAGGATTGACAGCACGCAGAGGGGACCGAGTCGATCCCCAGCTT
1 CCGGACCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGACCGAGTCGATCCCCAGCTT
* * * * * * *
17625908 GCGCATTCTGCCTCTTCGATCGGTTGAGCACCCGCACGCTCGTTTCTTAGGTTAGCTTAGGCATA
66 GCGCATTATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCATTTCGTAGGTTAGCTTAGGCATA
17625973 CAGAGTTCATTCC
131 CAGAGTTCATTCC
17625986 ATGTCTAAGG
Statistics
Matches: 118, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 83 0.70
159 34 0.29
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CCGGACCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGACCGAGTCGATCCCCAGCTT
GCGCATTATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCATTTCGTAGGTTAGCTTAGGCATA
CAGAGTTCATTCCTAGTTTAAGATAAGA
Found at i:17625916 original size:513 final size:501
Alignment explanation
Indices: 17624923--17626041 Score: 1296
Period size: 513 Copynumber: 2.2 Consensus size: 501
17624913 CCGGATGAAT
* * *
17624923 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACG
1 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACG
* * * * * * *
17624987 AAGTTCATTCCCACTCTAAGAACGAACCGGATCGAGGGTTGTAACAACAGGATTGACAGCACGGA
65 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAACAACAGGATCGACAGCACGCA
* * *
17625052 GGGGGGACCAGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCAAGC
130 GGGGGGACCAGGCTGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCGCAAGC
* * * *
17625117 ACGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAGTCGGACCGATG
195 ACGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCAAAGCCCCAGCCGGACCGAGG
* * * * * *
17625182 GTTGTGGCAGCAGGATAGATAGCACGTAGAGGGGTACCGGGCTGATCTTGGCTTGCGCATTAGGT
260 GTTATGGCAGCAGGACAGATAGCACGCAGAGGGGGACCGGGCTGATCCTGGCTTGCGCATTAGGC
* * * * *
17625247 CTCTCCGGTCGGTTCCGTGCCTAAATTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
325 CTCTCCGGTCGGCTCAGTACCCAAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
** * * * * * *
17625312 CCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAACAGGATTGATAGCATGTAGAAAGGGAT
390 CCCAGTCTAAGATAAGACCGGACCGAGGGTTGCGACAACAGGATTGACAGCACGCAGAAAGGGAC
* * * * *
17625377 TGGGCCGGTCCCCGGCTTGGGCATTCTGCCTC-TC-AGGCCGTCTGAGC
455 CGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGA-GCCGT-TGAGC
*
17625424 GCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
1 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
*
17625489 AGTTAATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGTGGTAGTAGGACCAGTAGCAGGATC
66 AGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGG--GT--T-GTA--A-CA--A-CAGGATC
* ** * * * *
17625554 GACAGTACGCAGGGGGGACGGGGCTGATCC-CTGGCTTATGCATTCTACCTCTTCGACCGGTTTA
119 GACAGCACGCAGGGGGGACCAGGCTGATCCTC-GGCTTACGCATTCTACCTCTCCGACCGGCTGA
* * * *
17625618 GCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCA
183 GCACCCGCAAGCACGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCAAAGCCCCA
* * * * *
17625683 GCCGGACTGAGGGTTATGGCAGCGGGACCGATAGTACGCAGAGGGGGACCTGG-TCGATCCCTGG
248 GCCGGACCGAGGGTTATGGCAGCAGGACAGATAGCACGCAGAGGGGGACCGGGCT-GAT-CCTGG
* *
17625747 CTTGCGCATTATGCCTCTCCGGTCGGCTCAGTACCCGAATGCTCATTTCGTGGGTTGACTTAGGC
311 CTTGCGCATTAGGCCTCTCCGGTCGGCTCAGTACCCAAATGCTCATTTCGTGGGTTGACTTAGGC
* * * * * **
17625812 TTACGGAGTTCATTCCTAGTTTAAGATAAGACCGGACCGAGGGTTGTGGCAGTAGGATTGACAGC
376 ATACGGAGTTCATTCCCAGTCTAAGATAAGACCGGACCGAGGGTTGCGACAACAGGATTGACAGC
* * * *
17625877 ACGCAG-AGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGATCGGTTGAGC
441 ACGCAGAAAGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGAGCCGTTGAGC
* * * * * * *
17625937 ACCCGCACGCTCGTTTCTTAGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGGATGCGG
1 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
***
17626002 AGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTG
66 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
17626042 CGACAGCAGG
Statistics
Matches: 516, Mismatches: 84, Indels: 30
0.82 0.13 0.05
Matches are distributed among these distances:
500 3 0.01
501 84 0.16
502 3 0.01
504 2 0.00
506 1 0.00
507 4 0.01
508 1 0.00
509 1 0.00
510 4 0.01
512 6 0.01
513 283 0.55
514 123 0.24
515 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (501 bp):
GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAACAACAGGATCGACAGCACGCAG
GGGGGACCAGGCTGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCGCAAGCA
CGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCAAAGCCCCAGCCGGACCGAGGG
TTATGGCAGCAGGACAGATAGCACGCAGAGGGGGACCGGGCTGATCCTGGCTTGCGCATTAGGCC
TCTCCGGTCGGCTCAGTACCCAAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATAAGACCGGACCGAGGGTTGCGACAACAGGATTGACAGCACGCAGAAAGGGACC
GAGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGAGCCGTTGAGC
Found at i:17625979 original size:158 final size:159
Alignment explanation
Indices: 17625545--17625994 Score: 412
Period size: 159 Copynumber: 2.8 Consensus size: 159
17625535 TAGGACCAGT
* * * * ** ** *
17625545 AGCAGGATCGACAGTACGCAG-GGGGGA-CGGGGCTGATCCCTGGCTTATGCATTCTACCTCTTC
1 AGCAGGACCGACAGCACGCAGAGGGGGACCTGGTC-GATCCCCAGCTTGCGCATTCTGCCTCTTC
* * * *
17625608 GACCGGTTTAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CAATG
65 GATCGGTTCAGCACCCGCACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCAATG
* * *
17625672 TCTAAGCCCCAGCCGGACTGAGGGTTATGGC
129 TCTAAGCACAAGCCGGACCGAGGGTTATGGC
* * * ** * *
17625703 AGCGGGACCGATAGTACGCAGAGGGGGACCTGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCG
1 AGCAGGACCGACAGCACGCAGAGGGGGACCTGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCG
* * * * * * * * *
17625768 GTCGGCTCAGTACCCGAATGCTCATTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCTA-GT
66 ATCGGTTCAGCACCCGCACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCATTCCAATGT
* * *
17625832 TTAAG-ATAAGACCGGACCGAGGGTTGTGGC
130 CTAAGCACAAG-CCGGACCGAGGGTTATGGC
* **
17625862 AGTAGGATTGACAGCACGCAGA-GGGGACC-GAGTCGATCCCCAGCTTGCGCATTCTGCCTCTTC
1 AGCAGGACCGACAGCACGCAGAGGGGGACCTG-GTCGATCCCCAGCTTGCGCATTCTGCCTCTTC
* * * *
17625925 GATCGGTTGAGCACCCGCACGCTCGTTTCTTAGGTTAGCTTAGGCATACAGAGTTCATTCC-ATG
65 GATCGGTTCAGCACCCGCACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCAATG
17625989 TCTAAG
129 TCTAAG
17625995 GATGCGGAGT
Statistics
Matches: 233, Mismatches: 51, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 110 0.47
159 115 0.49
160 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
AGCAGGACCGACAGCACGCAGAGGGGGACCTGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCG
ATCGGTTCAGCACCCGCACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCAATGTC
TAAGCACAAGCCGGACCGAGGGTTATGGC
Found at i:17626222 original size:26 final size:26
Alignment explanation
Indices: 17626179--17626229 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17626169 TGACTTAGGC
*
17626179 ATATGAAGTTTATCCCCAGTCTAAGG
1 ATATGAAGTTCATCCCCAGTCTAAGG
* *
17626205 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGAAGTTCATCCCCAGTCTAAG
17626230 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATATGAAGTTCATCCCCAGTCTAAGG
Found at i:17626410 original size:26 final size:26
Alignment explanation
Indices: 17626374--17626425 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17626364 GTTGACTTAG
*
17626374 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17626400 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17626426 TATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17626412 original size:197 final size:197
Alignment explanation
Indices: 17626141--17626512 Score: 530
Period size: 197 Copynumber: 1.9 Consensus size: 197
17626131 TTCGGTTGCC
* *
17626141 TAAGCACCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATATGAAGTTTATCCCCAGTCTAAGGA
1 TAAGCACCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCA
* * * * * **
17626206 TATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCCACAGTAGGACCAACAGCA
66 TACGGAGTTCATCCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCCACAACAGGACCAACAGCA
* * *
17626271 CGCAGGGGGGACTGGGTCGA-TCCCCGGCTTGCGTATTCTGCCTCTTCGGCCGGCCTCTCCGACC
131 CACAGGGGGGACCGGGTC-ATTCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCCTCTCCGACC
17626335 GAT
195 GAT
* * *
17626338 TAAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
1 TAAGCACCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCA
* * * * *
17626403 TACGGAGTTCATCCCCAGTCTAATATCAGACCGGACCGAGGGCTGCGACAACAGGATCGACAGCA
66 TACGGAGTTCATCCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCCACAACAGGACCAACAGCA
* *
17626468 CATAGGGGGGACCGGGTCATTCCCTGGCTTGCGCATTCTGCCTCT
131 CACAGGGGGGACCGGGTCATTCCCCGGCTTGCGCATTCTGCCTCT
17626513 CCGATCGACT
Statistics
Matches: 152, Mismatches: 22, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
196 1 0.01
197 151 0.99
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (197 bp):
TAAGCACCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATCCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCCACAACAGGACCAACAGCA
CACAGGGGGGACCGGGTCATTCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCCTCTCCGACCG
AT
Found at i:17626700 original size:158 final size:157
Alignment explanation
Indices: 17626400--17626901 Score: 417
Period size: 158 Copynumber: 3.2 Consensus size: 157
17626390 CCCAGTCTAA
* ** * * * * *
17626400 GCATACGGAGTTCATCCCCA-GTCTAATATCAGACCGGACCGAGGGCTGCGACAACAGGATCGAC
1 GCATACGGAGTTCAT-TCCATGTCTAA-GCCAAACCAGACCGAGGGTTGTGGCAACAGGATCGAC
* * * * * *
17626464 AGCACAT--AGGGGGGACCGGGTC-ATTCCCTGGCTTGCGCATTCTGCCTCTCC-GATCGACTGA
64 A--ACATGCAGAGGGGACCGGGTCGA-TCCCCGACTTGCGCATTATGCCTCTCCAG-CCGACTCA
* * * *
17626525 GCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
125 GCGCCTGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *** *
17626558 GCATAGGGAGTTCATTCCATGTCTAAGCCTAGCCGGACCGAGGGTTGTGGTAGTGGGA-CAGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCAAACCAGACCGAGGGTTGTGGCAACAGGATC-GACA
* * * * **
17626622 ACATGCAGAGGGGGATCGGG-CTGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGTT
65 ACATGCAGA-GGGGACCGGGTC-GATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTCAGCG
*
17626686 CCTGCACGCTCGTTTCATGGGTTGACTTAG
128 CCTGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
17626716 GCGTACGGAGTTAATTCCCA-GTCTCAGATCAAATCAGATCGAGGGTTGTGGCAACAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAG-CCAAACCAGACCGAGGGTTGTGGCAACAGGATCGAC
* * * * *
17626780 AGCATGCAGAGGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGC
64 AACATGCAGAGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTCAGCGC
* *
17626845 CTGCACGCTCGATTCATGGGTTGGTTTAG
129 CTGCACGCTCGTTTCATGGGTTGGCTTAG
17626874 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
17626902 ATACGGAGTT
Statistics
Matches: 266, Mismatches: 65, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
155 4 0.02
156 1 0.00
157 32 0.12
158 191 0.72
159 37 0.14
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCAAACCAGACCGAGGGTTGTGGCAACAGGATCGACAA
CATGCAGAGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTCAGCGCCT
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17626904 original size:26 final size:26
Alignment explanation
Indices: 17626874--17626926 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17626864 GTTGGTTTAG
17626874 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17626900 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17626926 G
1 G
17626927 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17627108 original size:26 final size:26
Alignment explanation
Indices: 17627071--17627123 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17627061 GTTGACTTAG
17627071 GCATACGAAGTTCACCCCCAGTCTAA
1 GCATACGAAGTTCACCCCCAGTCTAA
* **
17627097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACCCCCAGTCTAA
17627123 G
1 G
17627124 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCACCCCCAGTCTAA
Found at i:17628165 original size:26 final size:26
Alignment explanation
Indices: 17628136--17628188 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17628126 GTTGACTTAG
*
17628136 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17628162 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17628188 G
1 G
17628189 ATCGGACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17629503 original size:185 final size:185
Alignment explanation
Indices: 17629222--17629560 Score: 452
Period size: 185 Copynumber: 1.8 Consensus size: 185
17629212 TGTGGTAGCG
17629222 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCG
1 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCG
** * * *
17629287 GCTTAGCGCCCTTATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCA-GTCTAA
66 GCTTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAATTCAT-CCCATGTCTAA
*
17629351 GCATACAGAGTTCATTCCAAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAACA
130 CCATACAGAGTTCATTCCAAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAACA
* * * *
17629407 GGATCGACAGCACGTGC-G-GGGGGACCGGGCTGATCCCCGGCTTGCTCATTCTGCCTCTTCGGC
1 GGATCGACAGCAC--GCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGC
* * * * **
17629470 CGG-TTGAGCTCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCT
64 CGGCTT-AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAATTCATCCCATGTCT
* *
17629534 AACCATACGGAGTTCATTCCTAGTCTA
128 AACCATACAGAGTTCATTCCAAGTCTA
17629561 GGATTTTGAG
Statistics
Matches: 132, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
184 4 0.03
185 125 0.95
186 1 0.01
187 2 0.02
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (185 bp):
GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCG
GCTTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAATTCATCCCATGTCTAAC
CATACAGAGTTCATTCCAAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAACA
Found at i:17630239 original size:26 final size:26
Alignment explanation
Indices: 17630209--17630261 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17630199 GTTGACTTAG
17630209 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17630235 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17630261 G
1 G
17630262 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17630619 original size:159 final size:159
Alignment explanation
Indices: 17630242--17630629 Score: 408
Period size: 159 Copynumber: 2.4 Consensus size: 159
17630232 TAAGCATATG
* * *
17630242 GAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTACGGTAGCAGGATCGATAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGTAGCAGGATCGATAGCACGC
* ** * * * * *
17630306 A-GGAGGGACCAGGCCGATCCCCGGCATGCGCATTCTGCCTCTCCGGTAGCTTGAGCGCCCGCAC
65 AGGGGGGGACCAGGCCGATCCCCAACATACGCATTATGCCTCTCCGGCAGCTTCAACGCCCGCAC
* * * **
17630370 GCCCATTTTGTGGGTTGGCTTAGGCATAGG
130 ACCCATTTCGTGGGTTGACTTAGGCATACA
* * * * *
17630400 GAGTTCATT-CCATGTCTAAGAAACAG-CCAGATCGAGGGTTGTGGCAGCGGGATCGGTAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGATAGCACG
* * * * *
17630463 CAGGGGGGGACCAGGCTGATCCCCAACTTACGCATTATGCCTCTCTGGCCGGC-TCAACGCCTGC
64 CAGGGGGGGACCAGGCCGATCCCCAACATACGCATTATGCCTCTCCGG-CAGCTTCAACGCCCGC
*
17630527 ACACTCATTTCGTGGGTTGACTTAGGCATACA
128 ACACCCATTTCGTGGGTTGACTTAGGCATACA
* * ** * *
17630559 GAGTTCATTCCCAATCTAAGATCAGACTAGATCGAGGGTTGCGGTAGCATCATTGATAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGCA
17630624 GGGGGG
66 GGGGGG
17630630 ATCGGGCCGG
Statistics
Matches: 185, Mismatches: 38, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 51 0.28
159 126 0.68
160 5 0.03
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.22
Consensus pattern (159 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGCA
GGGGGGGACCAGGCCGATCCCCAACATACGCATTATGCCTCTCCGGCAGCTTCAACGCCCGCACA
CCCATTTCGTGGGTTGACTTAGGCATACA
Found at i:17630735 original size:158 final size:157
Alignment explanation
Indices: 17630235--17630736 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 157
17630225 CCCAGTCTAA
* * * *
17630235 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTACGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGTAGCAGGATCGAT
* * *
17630299 AGCACGCAGGAGGGACCAGGCCGATCCCCGGCATGCGCATTCTGCCTCTCCGGTAGCTTGAGCGC
65 AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTGGC-TGAGCGC
*
17630364 CCGCACGCCCATTTTGTGGGTTGGCTTAG
129 CCGCACGCTCATTTTGTGGGTTGGCTTAG
* * * * * *
17630393 GCATAGGGAGTTCATT-CCATGTCTAAGAAACAG-CCAGATCGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGA
* ** * * * * * *
17630456 TAGCACGCAGGGGGGGACCAGGCTGATCCCCAACTTACGCATTATGCCTCTCTGGCCGGCTCAAC
64 TAGCACGCA-GGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-TGGCTGAGC
* * * *
17630521 GCCTGCACACTCATTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCATTTTGTGGGTTGGCTTAG
* * * ** *
17630552 GCATACAGAGTTCATTCCCAATCTAAGATCAGACTAGATCGAGGGTTGCGGTAGCATCATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGATA
* * * * * *
17630617 GCACGTAGGGGGGATCGGGCCGGTCCCCGGCTTGCACATTCTGTCTCTCCGGTTGGCTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-TGGCTGAGCGCC
* * *
17630682 CGCACGCTCGTTTTGTGTGATGGCTTAG
130 CGCACGCTCATTTTGTGGGTTGGCTTAG
17630710 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17630737 CATACGGAGT
Statistics
Matches: 273, Mismatches: 63, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 142 0.52
159 120 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGATA
GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTGGCTGAGCGCCC
GCACGCTCATTTTGTGGGTTGGCTTAG
Found at i:17630746 original size:26 final size:26
Alignment explanation
Indices: 17630710--17630762 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17630700 GATGGCTTAG
*
17630710 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17630736 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17630762 G
1 G
17630763 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17630947 original size:196 final size:195
Alignment explanation
Indices: 17630610--17631324 Score: 749
Period size: 196 Copynumber: 3.7 Consensus size: 195
17630600 CGGTAGCATC
* * * *** *
17630610 ATTGATAGCACGTAGGGGGGATCGGGCCGGTCCCCGGCTTGCACATTCTG-TCTCTCCGGTTGGC
1 ATTGATAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCT-TCTCCGACCGAC
* * * * *
17630674 TGAGCGCCCGCACGCTCGTTTTGTGTGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
** * * ** * *
17630739 TACGGAGTTCATTCCCTATCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGACCAGTAGCA
130 TATAGAGTTCATTCCC-ATCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGACCAGCAGCA
17630804 GG
194 GG
* * * * *
17630806 ATCGATAGCATGCAGGGGGGATCGGGCCGATCTCTGACTTGCGCATTCTGCTTCTCCGACCGACT
1 ATTGATAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCTTCTCCGACCGACT
* ** * *
17630871 GAGCGCCCGTACGTTCATTTCGTGGGTTGGCTTAGGCGTACAGAGTTCATTCCATGTCTAAGCAT
66 GAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
*
17630936 ATAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGGGGGTTGCGACAGTAGGACCAGCAGCAG
131 ATAGAGTTCATTCCC-ATCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGACCAGCAGCAG
17631001 G
195 G
* * * * * * * * *
17631002 ATTGGTAGCACGTAGGGGGGATCGGGTCGATCCTCGACTTTCATATTCTACCTT-TTCGGCC-AG
1 ATTGATAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCT-GCTTCTCCGACCGA-
* * * * *
17631065 CTGAGTGCCTGCACACTCGTTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 CTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * ** *
17631130 ATATAGAGTTCATT-CCAGTCTAAGATCGGACCGGATTGAGTTTTGCGACAGTAGGACCAACAGC
129 ATATAGAGTTCATTCCCA-TCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGACCAGCAGC
17631194 AGG
193 AGG
* * * * * * *** *
17631197 ATTGGTAGCACGCAAGGGGGATTGGGTCAATCCCCGGCTT-CTGTGTTCTGCCTCTCCGACCGAC
1 ATTGATAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGC-ACATTCTGCTTCTCCGACCGAC
* * *
17631261 TGAGC-ACCGACACACTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATCTCTAAGC
65 TGAGCGCCCG-CACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17631325 CCTAGTCGGA
Statistics
Matches: 433, Mismatches: 78, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
194 6 0.01
195 146 0.34
196 277 0.64
197 4 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (195 bp):
ATTGATAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCTTCTCCGACCGACT
GAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
ATAGAGTTCATTCCCATCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGACCAGCAGCAGG
Found at i:17631132 original size:26 final size:25
Alignment explanation
Indices: 17631102--17631153 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
17631092 GTTGGTTTAG
*
17631102 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
*
17631128 GCATATAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
17631153 G
1 G
17631154 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:17631510 original size:26 final size:26
Alignment explanation
Indices: 17631481--17631533 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17631471 GTTGACTTAG
*
17631481 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17631507 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17631533 G
1 G
17631534 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17632031 original size:26 final size:26
Alignment explanation
Indices: 17631981--17632033 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17631971 GTTGGCTTAG
*
17631981 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
17632007 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACAGAGTTCATTCCAT-ATCTAA
17632033 G
1 G
17632034 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17632213 original size:26 final size:26
Alignment explanation
Indices: 17632177--17632229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17632167 GTTGACTTAC
* *
17632177 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17632203 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17632229 G
1 G
17632230 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17632570 original size:26 final size:26
Alignment explanation
Indices: 17632523--17632572 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17632513 CGCTTAGGCG
*
17632523 TACGGAGTTCATTCCATGTCTAAGCA
1 TACGGAGTTCATTCCATATCTAAGCA
17632549 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
17632573 AGTTTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCA
Found at i:17633290 original size:26 final size:26
Alignment explanation
Indices: 17633253--17633305 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17633243 GTTGACTTAG
*
17633253 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17633279 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17633305 G
1 G
17633306 ATCGAACCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17634461 original size:26 final size:26
Alignment explanation
Indices: 17634432--17634484 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17634422 GTTGGCTTAG
17634432 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17634458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17634484 G
1 G
17634485 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17634680 original size:26 final size:26
Alignment explanation
Indices: 17634644--17634693 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17634634 GACTTAGGCA
17634644 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
*
17634670 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
17634694 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:17635280 original size:342 final size:341
Alignment explanation
Indices: 17634618--17635352 Score: 851
Period size: 342 Copynumber: 2.1 Consensus size: 341
17634608 GTGCCCTTAT
* * * *
17634618 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTTACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * ** *
17634683 CCCAGTCTAAGATTAGATCGGACCAAGGGTTGTGACAGCAAGATCGACAGCATGTAGGGGAGACT
66 CCCAGTCTAAGATTAAATCGGACCAA-GGTTGCGACAGCAAGATCGACAGCACATAGGGGAGACC
* **
17634748 GGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGACTGGCTGACCGCCCGCACGTTCGTTTTGT
130 GGGCCGATCCTCGACTTACGCATTCTACCTCTCCGACTGGCTGACCGCCCGCAC-TTCGTTTCAT
* *
17634813 GGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCTGATCGAGGGTAGTGGCA
194 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCTGACCGAGGGTAGTGGCA
* ** * *
17634878 GCGGGATCCGTACCACATAAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCTTG
259 GCGGGATCCGTACCACATAAAGGGGGACCAGGCCAATCCCCAACTTACGCATTATGCCTCT-TCG
* *
17634943 -CCAGCTGAGCGCCCGCAA
323 ACCAGCTCAGCACCCGCAA
* * *
17634961 GCTCGTTTCGTGGGTTGACTTAGGCAAATAGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * *
17635026 CCCAGTCTATGATTAAATCGGACCGAA-GTTGCGACAGCAGGATCGACAGCACATAGGGGGGACC
66 CCCAGTCTAAGATTAAATCGGACC-AAGGTTGCGACAGCAAGATCGACAGCACATAGGGGAGACC
** * *
17635090 GGGCCGATCC-CTGACTTGTGCATTCTACCTCTCCG-GTCGGCTGAGCGCCCGCA-TTCCCGTTT
130 GGGCCGATCCTC-GACTTACGCATTCTACCTCTCCGACT-GGCTGACCGCCCGCACTT--CGTTT
* * *
17635152 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCTAG-CTGGACCGAGGGTTGT
191 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCT-GACCGAGGGTAGT
* * * * **
17635216 GGCAGCGGGA-CC-T-GCAGCATGCAGAA-GGGGACCAGGTCGATCCCCAATTTGTGCATTATGC
255 GGCAGCGGGATCCGTACCA-CAT--A-AAGGGGGACCAGGCCAATCCCCAACTTACGCATTATGC
* * *
17635277 CTCTTCGATCGGCTCAGCACCCGCAC
316 CTCTTCGACCAGCTCAGCACCCGCAA
* * * * *
17635303 GCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 GCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAAG
17635353 ATCAGACCGA
Statistics
Matches: 331, Mismatches: 50, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
339 2 0.01
340 6 0.02
341 8 0.02
342 231 0.70
343 82 0.25
344 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (341 bp):
GCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATTAAATCGGACCAAGGTTGCGACAGCAAGATCGACAGCACATAGGGGAGACCG
GGCCGATCCTCGACTTACGCATTCTACCTCTCCGACTGGCTGACCGCCCGCACTTCGTTTCATGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCTGACCGAGGGTAGTGGCAGC
GGGATCCGTACCACATAAAGGGGGACCAGGCCAATCCCCAACTTACGCATTATGCCTCTTCGACC
AGCTCAGCACCCGCAA
Found at i:17635372 original size:159 final size:158
Alignment explanation
Indices: 17635207--17635500 Score: 349
Period size: 158 Copynumber: 1.9 Consensus size: 158
17635197 TAGCTGGACC
* * * * * **
17635207 GAGGGTTGTGGCAGCGGGACCTG-CAGCATGCAGAAGGGGACCAGGTC-GATCCCCAATTTGTGC
1 GAGGGTTGCGGCAGCAGGA-CTGACAGCATG-AGAAGGGGACCAAGCCAG-TCCCCAACTTACGC
* * * * *
17635270 ATTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGA
63 ATTATGCCTCTCCAATCGGCTAAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
17635335 GTTCATTCCCAATCTAAGATCAGACCGAAGT
128 GTTCATTCCCAATCTAAGATCAGACCGAAGT
* * * * *
17635366 GAGGGTTGCGGCAGCAGGATTGACAGCATGTGAGGGGGATCAAGCCAGTCCCCGACTTACGCATT
1 GAGGGTTGCGGCAGCAGGACTGACAGCATGAGAAGGGGACCAAGCCAGTCCCCAACTTACGCATT
* * * * *
17635431 CTGTCTCTCCAATCGGCTAAACACTCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
66 ATGCCTCTCCAATCGGCTAAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
17635496 CATTC
131 CATTC
17635501 AATGTCTAAG
Statistics
Matches: 111, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
158 86 0.77
159 25 0.23
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAGGACTGACAGCATGAGAAGGGGACCAAGCCAGTCCCCAACTTACGCATT
ATGCCTCTCCAATCGGCTAAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAATCTAAGATCAGACCGAAGT
Found at i:17635881 original size:26 final size:26
Alignment explanation
Indices: 17635851--17635903 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17635841 GTTCACATAG
17635851 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17635877 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17635903 G
1 G
17635904 ATCGGTCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17636166 original size:868 final size:842
Alignment explanation
Indices: 17634616--17636167 Score: 1870
Period size: 868 Copynumber: 1.8 Consensus size: 842
17634606 GAGTGCCCTT
* * *
17634616 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTTACGGAGTTCA
1 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATAAGGAGTTCA
* * * * *
17634681 TTCCCAGTCTAAGATTAGATCGGACCAAGGGTTGTGACAGCAAGATCGACAGCATGTAGGGGAGA
66 TTCCCAGTCTAAGATCAAATCAGACCAAGGGTAGTGACAGCAAGATCGACAGCATGCAGGGGAGA
* * * *
17634746 CTGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGACTGGCTGACCGCCCGCACGTTCGTTTT
131 CTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACTAGCTGACCGCCCGCACGCTCGTTTG
* *
17634811 GTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCTGATCGAGGGTAGTGG
196 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCTGATCGAGGGTAGTGG
* ** * * *
17634876 CAGCGGGATCCGTACCACATAAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCT
261 CAGAGCCATCCGTACCACACAAAGGGGGACCAGGCCAATCCCCGGCTTACGCATTATGCCTCTCT
* * * * * * * *
17634941 TGCCAGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCAAATAGAGTTCATCCCTAGT
326 CGCCAGCTGAGCGCCCACAAGCTCATTTCATGGGTTCACATAGGCAAACAGAGTTCATCCCCAGT
* * *
17635006 CTAAGCATATGGAGTTCATTCCCAGTCTATGATTAAATCGGACCGAAGTTGCGACAGCAGGATCG
391 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAAATCGGACCGAAGTTGCGACAGCAGGATCA
* * * ** *
17635071 ACAGCACATAGGGGGGACCGGGCCGATCCCTGACTTGTGCATTCTACCTCTCCGGTCGGCTGAGC
456 ACAGCACACAGGGGGGACCGGGCCGATCCCTCACCTGTGCATTCTACCTCTCCGACCGACTGAGC
* * * *
17635136 GCCCGCATTCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCTAGC
521 ACCCGCA-TCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGC
* * * *
17635201 TGGACCGAGGGTTGTGGCAGCGGGACCTGCAGCATGCAGAAGGGGACCAGGTCGATCCCCAATTT
585 CGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCATGCAGAAGGGGACCAGGCCGATCCCCAACTT
** * * *
17635266 GTGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATA
650 ACGCATTATACCTCTCCGACCGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATA
17635331 CGGAGTTCATTCCCAATCTAAGATCAGACCGAAGTGAGGGTTGCGGCAGCAGGATTGACAGCATG
715 CGGAGTTCATTCCCAATCTAAGATCAGACCGAAGTGAGGGTTGCGGCAGCAGGATTGACAGCATG
17635396 TGAGGGGGATCAAGCCAGTCCCCGACTTACGCATTCTGTCTCTCCAATCGGCTAAACACTCGC
780 TGAGGGGGATCAAGCCAGTCCCCGACTTACGCATTCTGTCTCTCCAATCGGCTAAACACTCGC
* * *
17635459 ATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCAATGTCTAAGCATAAGGAGTTC
1 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAA-GTCTAAGCATAAGGAGTTC
* * *
17635523 ATTCCCAGTCTAAGATCAAATCAGACAGAAGGTTGTGACAGTAGGACCAGCAGCAGGATTGGCAG
65 ATTCCCAGTCTAAGATCAAATCAGAC-CAAGG--GT---AGT--GA-CAGCA--A-GATCGACAG
* * * *
17635588 CATGCAGGGGGGATTGGGCCGATCCCCGGC-TACGCATTCTGCCTCTCCGA-TCAGCTGAGCGCC
118 CATGCAGGGGAGACTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACT-AGCTGACCGCC
17635651 CGCACGCTCGTTTGGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCC-
182 CGCACGCTCGTTTGGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCT
* *
17635715 GA-CTGAGGGTTGTGGCAGTAAGACCATCAGCGGGATCGACAGCACACAGAA-GGGGACCAGGCT
246 GATC-GAGGGTAGTGGCAG--AG-CCATC--C--G-T--AC--CACACA-AAGGGGGACCAGGCC
* * * * *
17635778 GATCCCCGGCTTGCGCATTATGCCTCTC-CGATCGGACTGAGCGCCCACATGCTCATTTCATGGG
297 AATCCCCGGCTTACGCATTATGCCTCTCTCG-CCAG-CTGAGCGCCCACAAGCTCATTTCATGGG
* *
17635842 TTCACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-T
360 TTCACATAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
*** * ** * *
17635906 CGGTCCGGACCGAGGGTTGCGGTAGTAGGATCAACAGCACGCAGGGGGGACCGGGCCGATCCC-C
425 AAAT-CGGACCGA-AGTTGCGACAGCAGGATCAACAGCACACAGGGGGGACCGGGCCGATCCCTC
* * *
17635970 ACCT-TGCATATTTTACCTCTCTGACCTACTGAGCACCCGC-TCGCTCGTTTCATGGGTTGGCTT
488 ACCTGTGC--ATTCTACCTCTCCGACCGACTGAGCACCCGCATC-C-CGTTTCATGGGTTGGCTT
* *
17636033 AGGCATAGGGCGTCCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGG
549 AGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGG
* * * * *
17636098 CAGCAAT-CAGAAGGGGACCTA-GCCGATCCTCAGCTTACGCATTCTACCTCTCCGGCCGGCTGA
614 CAGC-ATGCAGAAGGGGACC-AGGCCGATCCCCAACTTACGCATTATACCTCTCCGACCGGCTCA
17636161 GCACCCG
677 GCACCCG
17636168 TGTCACGGAC
Statistics
Matches: 583, Mismatches: 87, Indels: 53
0.81 0.12 0.07
Matches are distributed among these distances:
842 2 0.00
843 78 0.13
844 4 0.01
846 2 0.00
849 2 0.00
851 2 0.00
852 5 0.01
853 2 0.00
854 102 0.17
855 34 0.06
856 1 0.00
857 3 0.01
859 1 0.00
861 1 0.00
862 1 0.00
864 2 0.00
865 1 0.00
866 49 0.08
867 93 0.16
868 195 0.33
869 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (842 bp):
ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATAAGGAGTTCA
TTCCCAGTCTAAGATCAAATCAGACCAAGGGTAGTGACAGCAAGATCGACAGCATGCAGGGGAGA
CTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACTAGCTGACCGCCCGCACGCTCGTTTG
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCTGATCGAGGGTAGTGG
CAGAGCCATCCGTACCACACAAAGGGGGACCAGGCCAATCCCCGGCTTACGCATTATGCCTCTCT
CGCCAGCTGAGCGCCCACAAGCTCATTTCATGGGTTCACATAGGCAAACAGAGTTCATCCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAAATCGGACCGAAGTTGCGACAGCAGGATCA
ACAGCACACAGGGGGGACCGGGCCGATCCCTCACCTGTGCATTCTACCTCTCCGACCGACTGAGC
ACCCGCATCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGCC
GGACCGAGGGTTGTGGCAGCGGGACCGGCAGCATGCAGAAGGGGACCAGGCCGATCCCCAACTTA
CGCATTATACCTCTCCGACCGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAATCTAAGATCAGACCGAAGTGAGGGTTGCGGCAGCAGGATTGACAGCATGT
GAGGGGGATCAAGCCAGTCCCCGACTTACGCATTCTGTCTCTCCAATCGGCTAAACACTCGC
Found at i:17636661 original size:26 final size:26
Alignment explanation
Indices: 17636625--17636677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17636615 GTTGACTTAG
*
17636625 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17636651 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17636677 G
1 G
17636678 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17637005 original size:26 final size:26
Alignment explanation
Indices: 17636969--17637021 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17636959 GTTGGCTTAG
*
17636969 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17636995 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17637021 G
1 G
17637022 AGTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17640269 original size:184 final size:185
Alignment explanation
Indices: 17639855--17640270 Score: 511
Period size: 184 Copynumber: 2.3 Consensus size: 185
17639845 CGTATGGAGT
* * * *
17639855 TCATTCCCAGTCTAAGATCAGA-CCAGACCAAGGGTTGCAGTAGCAAGACTAGCAGCAGGATCGA
1 TCATCCCCAGTCTAAGATCGGATCGAGACCAAGGGTTGCAGTAGCAGGACTAGCAGCAGGATCGA
* * * * * *
17639919 CAGCATACAGGGGTGGACCGAGCTGATCCCCAACTTTTGCATTCTGCCTTTCCAGCTGGCCTTTT
66 CAGCATACAGGGGTGGACCGAGCCGATCCCCAACTTTTGCATTCTGCCTCTCCAACCGGCCTCTC
* * *
17639984 CGGCCTACTAAGCACCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACAGAGT
131 CAGCCTACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGC
* * * *
17640039 TTATCCCCAGTCTAAAATCGGATCG-GACCAAAGGTTGTAGTAGCAGGACTAGCAGCAGGATCGA
1 TCATCCCCAGTCTAAGATCGGATCGAGACCAAGGGTTGCAGTAGCAGGACTAGCAGCAGGATCGA
** *** *
17640103 CAGCATGTAGGGGTGGACCGAGCCGATCCCTGGC-TTTGATATTCTGCCTCTCCAACCGGCCTCT
66 CAGCATACAGGGGTGGACCGAGCCGATCCCCAACTTTTG-CATTCTGCCTCTCCAACCGGCCTCT
* * * *
17640167 CCAGCCTGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAAGC
130 CCAGCCTACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGC
*
17640223 TCATCCCCAGTCTAAGATCGGATCGAG-CCGAGGGTTGC-GATAGCAGGA
1 TCATCCCCAGTCTAAGATCGGATCGAGACCAAGGGTTGCAG-TAGCAGGA
17640271 TCGACAACAC
Statistics
Matches: 195, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
183 6 0.03
184 187 0.96
185 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (185 bp):
TCATCCCCAGTCTAAGATCGGATCGAGACCAAGGGTTGCAGTAGCAGGACTAGCAGCAGGATCGA
CAGCATACAGGGGTGGACCGAGCCGATCCCCAACTTTTGCATTCTGCCTCTCCAACCGGCCTCTC
CAGCCTACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGC
Found at i:17640407 original size:26 final size:26
Alignment explanation
Indices: 17640371--17640423 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17640361 GTTGACTTAG
17640371 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17640397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17640423 G
1 G
17640424 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17640582 original size:184 final size:185
Alignment explanation
Indices: 17640212--17640569 Score: 438
Period size: 184 Copynumber: 1.9 Consensus size: 185
17640202 GTTGACTTAG
* *
17640212 GCATACGAAGCTCATCCCCAGTCTAAGATCGGATCGAGCCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGAAGCTCATCCCCAGTCTAAGATCGGATCGAGCCGAGGGTTACGACAGCAGGATCGACA
*
17640277 ACACGCAGGAGGGGACCGAGCCAGTCCCTGACTTGCACATACTGCCTCTCCGGTCGGCAAAGCAC
66 ACACGCAGGAGGGGACCGAGCCAGTCACTGACTTGCACATACTGCCTCTCCGGTCGGCAAAGCAC
* *
17640342 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
131 CCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGATCATCCCCAGTCTAA
* * * * * *
17640397 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C-AGGACCGAGGGTTACGGCAGTAGGATCGG
1 GCATACGAAGCTCATCCCCAGTCTAAGATCGGATCGA-G-CCGAGGGTTACGACAGCAGGATCGA
* * * * ***
17640460 TAGCACGCAGG-GGGGATCGAGCC-GATCACTGACTTGCACAT-TTCGCCTCTCCGGTCGGTTGA
64 CAACACGCAGGAGGGGACCGAGCCAG-TCACTGACTTGCACATACT-GCCTCTCCGGTCGGCAAA
* * * * *
17640522 GCGCCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGATCAT
127 GCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGATCAT
17640570 TCCTTGTCTA
Statistics
Matches: 146, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
183 3 0.02
184 84 0.58
185 59 0.40
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.21
Consensus pattern (185 bp):
GCATACGAAGCTCATCCCCAGTCTAAGATCGGATCGAGCCGAGGGTTACGACAGCAGGATCGACA
ACACGCAGGAGGGGACCGAGCCAGTCACTGACTTGCACATACTGCCTCTCCGGTCGGCAAAGCAC
CCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGATCATCCCCAGTCTAA
Found at i:17641000 original size:26 final size:26
Alignment explanation
Indices: 17640970--17641022 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17640960 GTTGAACTAG
17640970 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17640996 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17641022 G
1 G
17641023 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17641483 original size:161 final size:158
Alignment explanation
Indices: 17640996--17641496 Score: 459
Period size: 157 Copynumber: 3.2 Consensus size: 158
17640986 CCCAGTCTAA
* ** * * * * * *
17640996 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTTGTCTAAGATCAGA-CAGACCGAGGGTTACGGTAGCTGGATCGATA
* * * *
17641061 GCACGTA-GGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCT-GTCGGCTGAGCGC
65 GCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCT-CTGGTCGGCTGAGCCC
* *
17641124 C-CATACGCCCATTTCATGGGTTGGCTTAG
129 CGCATACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * ** *
17641153 GCATA-GGCAGTTCATTCCATGTCTAAGCCCCA-ACCGAATCGAGAGTTGTGGT-GGTGAGATCG
1 GCATACGG-AGTTCATTCCTTGTCTAAG-ATCAGACAG-ACCGAGGGTTACGGTAGCTG-GATCG
* * * * * * * * *
17641215 GTAGCATGCAGAGAGAACCGGGTCGAT-CCCGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGT
62 ATAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAG-
* *
17641279 GCCCGCAT--GCTCGTTTCGTGGGTTGGCTTAG
126 CCCCGCATACGCTCGTTTCATGGGTTGGCTTAG
*
17641310 GCATACGGAGTTCATT-CTTGTCTAAGATCAGACTAGACCGAGGGTTCCGGTAGCTGGATCGATA
1 GCATACGGAGTTCATTCCTTGTCTAAGATCAGAC-AGACCGAGGGTTACGGTAGCTGGATCGATA
* *
17641374 GCACGTAGGGGGGACCGGG-CTGATCCCCGGCTTGTGCATTCTGCCTCTTTGGTCGGCTAAGCAC
65 GCACGTAGGGGGGACCGGGTC-GATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGC-C
17641438 CCGCATGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCGCAT--ACGCTCGTTTCATGGGTTGGCTTAG
*
17641471 GCATACGGAGTTCA-TCATTGTCTAAG
1 GCATACGGAGTTCATTCCTTGTCTAAG
17641497 CATACGGAGT
Statistics
Matches: 269, Mismatches: 55, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
155 3 0.01
156 53 0.20
157 147 0.55
158 17 0.06
159 3 0.01
160 1 0.00
161 45 0.17
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTTGTCTAAGATCAGACAGACCGAGGGTTACGGTAGCTGGATCGATAG
CACGTAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCCCCG
CATACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17642401 original size:159 final size:157
Alignment explanation
Indices: 17641928--17642538 Score: 581
Period size: 159 Copynumber: 3.9 Consensus size: 157
17641918 AGTGTTGCGA
* * * * ** * *
17641928 CAGCAGGATCGGCAGCACGCA-TGGGGGATTGGGTCGATCTTCGGCTTCCGCATTCTGCCTC-TC
1 CAGCAGGATCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC
* * * * * * *
17641991 TGGTCGGCTGAACGCCCGCACGCC-CATTTCATGGGTTAGCTTAGGCATAAGGAGATCATTCCAT
66 -GG-CGGCTCAGCGCCCGCAC-CCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* *
17642055 GTCTAAGCCCCAGCCTGACCGAGGGTTGTGG
128 GTCTAAGCCCCAGTCAGA-CGAGGGTTGTGG
* * * * * *
17642086 CAGCTGGACCAGCAGCACACAGAGGGGGATCGAGCCAATCCCCGACTTGCGCATTATGCCTCTTC
1 CAGCAGGATCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC
* *
17642151 GGCTTGCTCAGCGCCCGCACGCC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
66 GGC-GGCTCAGCGCCCGCAC-CCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
**
17642215 TCTAAGCCCCAGTCAGACAGACAGTTGTGG
129 TCTAAGCCCCAGTCAGAC-GAGGGTTGTGG
* * * * *
17642245 CAGCGGGATCAGCGGCACGTAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATACCTCTTC
1 CAGCAGGATCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC
* *
17642310 GGTCGGCTCAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-G
66 GG-CGGCTCAGCGCCCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
**** *
17642374 TCTAAG-ATTGGATCGGATCGAGGGTTGTGG
129 TCTAAGCCCCAG-TCAGA-CGAGGGTTGTGG
* * * * ** * *
17642404 CAGCAGGATC-GACAGTACGCAG-GGGGGACCGGGTCGATCCCCCGCTTATGCATTCTGCCTCTC
1 CAGCAGGATCAG-CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTT
* * * * *
17642467 CGGCCGGCTAAACGCCCGCACACTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATG
65 CGG-CGGCTCAGCGCCCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
17642532 TCTAAGC
129 TCTAAGC
17642539 ATACGAACTT
Statistics
Matches: 373, Mismatches: 68, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 114 0.31
159 249 0.67
160 7 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
CAGCAGGATCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC
GGCGGCTCAGCGCCCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGTCAGACGAGGGTTGTGG
Found at i:17643445 original size:26 final size:26
Alignment explanation
Indices: 17643396--17643448 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17643386 GTTGGCTTAG
* *
17643396 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17643422 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
17643448 G
1 G
17643449 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17643805 original size:27 final size:26
Alignment explanation
Indices: 17643775--17643826 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
17643765 GTTGACTTAG
*
17643775 GCATACGGAGTTCATCCCCTAGTCTAA
1 GCATACGAAGTTCATCCCC-AGTCTAA
*
17643802 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
17643827 GGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17644090 original size:159 final size:157
Alignment explanation
Indices: 17643853--17644463 Score: 550
Period size: 159 Copynumber: 3.8 Consensus size: 157
17643843 AATGTTGCGA
* ** * * **
17643853 CAGCAGGATCGACAGCACGCAGGGGGGATTGGGCTGATCCCCAGCTTATGCATTCCGCCTCTCTA
1 CAGCAGGACCG-CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCTA
* * * *
17643918 GCCGACTGAGCACCCGTACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
65 GCCGGCTCAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
*
17643983 TAAGTCCCAGCCGGACCGAGGGTTATGG
130 TAAGTCCCAGCCGGACCGAGGGTTGTGG
* * *
17644011 CAGCTGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTACGCATTATGCCTCT-T
1 CAGCAGGACC-GCAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCT
* ** *
17644075 CGGCTTGCTCAGCACCCGCACGCCTGTTTCGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATG
64 -AGCCGGCTCAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * ** *
17644140 TCTAAGCCCCAGTCGGACTAAGGGTTGGGG
128 TCTAAGTCCCAGCCGGACCGAGGGTTGTGG
* * * * * *
17644170 CAGCAGGACCGGCAGCACG-TGTAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCT-TT
1 CAGCAGGACC-GCAGCACGCAG--GGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTC
* * * * * * * * * *
17644233 TCAGCCGGCTCAACGCCCACACGCTTGTTTCGTTGGTTGACTGATGCATATGAAGTTCATTCCCA
63 T-AGCCGGCTCAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCA
* * * * *
17644298 -GTCTAAGAT-CGAACTGGATCGAGGCTTGTGG
126 TGTCTAAG-TCCCAGCCGGACCGAGGGTTGTGG
* * * * *
17644329 CAGCAGGATCGACAGCATGCAGGGAGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCT
1 CAGCAGGACCG-CAGCACGCAGGG-GGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCT
* * * * * * *
17644394 GGCCGGTTGAGCGCCCGTAAG-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
64 AGCCGGCTCAGCACCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
17644458 TCTAAG
128 TCTAAG
17644464 CATATGGAGT
Statistics
Matches: 363, Mismatches: 77, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
158 28 0.08
159 329 0.91
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
CAGCAGGACCGCAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCTAG
CCGGCTCAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGTCCCAGCCGGACCGAGGGTTGTGG
Found at i:17644473 original size:26 final size:26
Alignment explanation
Indices: 17644437--17644489 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17644427 GTTGGCTTAG
*
17644437 GCATACGGAGTTC-ATTCCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
*
17644463 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
17644489 G
1 G
17644490 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:17645172 original size:26 final size:26
Alignment explanation
Indices: 17645142--17645194 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17645132 GTTGACTTAG
* *
17645142 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
17645168 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17645194 G
1 G
17645195 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17645969 original size:171 final size:168
Alignment explanation
Indices: 17645735--17646517 Score: 539
Period size: 158 Copynumber: 4.8 Consensus size: 168
17645725 AGCAAGACCA
* * * * * * **
17645735 GCAGCAGGATCGGCAGAACGCAGGGGGGGACCAGGCCGATACCTGGCTTGCGCATTCTGCCTCTT
1 GCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTC-T
* * * *
17645800 CGGTAGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCATG
65 CGGTAGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
*
17645865 TCTATGCCCCAGTCGGACTGAGGGTTATGGCAGCAGGACCG
130 TCTAAGCCCCAGTCGGACTGAGGGTTATGGCAGCA-GA-CG
* * *
17645906 GCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGAT-CCCTGACTTGCGCATTATGCCTCT
1 GCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAG-CTTGCGCATTCTGCCTCT
* * * ** * *
17645970 CTG-ACCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGATTTCATCCCC
65 CGGTA--GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCC
* * * ***
17646034 A-GTGTAAG----A-TCGGACTG-GGCTGA-GG--TTTG-CG
127 ATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGCAGCAGACG
* * * * * * **
17646065 GCAGTAGGATCGACAGCACACAGA-GGGGATCGAGCTAATCCCCAGTTTATGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTC
* * * * * *
17646129 TGGTTGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATG
66 -GGTAGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
* *
17646194 TCTAAGCCCCAG-CTGAATCGAGGGTTATGGCAGC--A-G
130 TCTAAGCCCCAGTCGGACT-GAGGGTTATGGCAGCAGACG
* *
17646230 G-A-C-----CGACAGCATGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTGTGCCTCTT
1 GCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTC-T
** * *
17646288 CGGCCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-
65 CGGTAGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAT
* *** * * *
17646352 GTGTAAG-ATTAGACCGGACCGAGGG-T-T-------G-TG
129 GTCTAAGCCCCAG-TCGGACTGAGGGTTATGGCAGCAGACG
* * * *
17646382 GCAGCAGGATCGACAGCACGTAG-GGGGGACCGGG-TCGATCCCCGGCTTGCGCGTTCTACCTCT
1 GCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCT-GATCCCCAGCTTGCGCATTCTGCCTC-
*** * * *
17646445 TCGACCGG-TAGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCA
64 TCGGTAGGCT-GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA
17646509 TGTCTAAGC
128 TGTCTAAGC
17646518 ATACGGAGCT
Statistics
Matches: 480, Mismatches: 95, Indels: 86
0.73 0.14 0.13
Matches are distributed among these distances:
152 2 0.00
153 1 0.00
154 1 0.00
157 9 0.02
158 185 0.39
159 131 0.27
160 8 0.02
161 1 0.00
162 5 0.01
163 1 0.00
164 7 0.01
165 8 0.02
166 8 0.02
167 1 0.00
169 1 0.00
170 6 0.01
171 102 0.21
172 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (168 bp):
GCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTC
GGTAGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGTCGGACTGAGGGTTATGGCAGCAGACG
Found at i:17646393 original size:317 final size:322
Alignment explanation
Indices: 17645786--17646517 Score: 811
Period size: 317 Copynumber: 2.3 Consensus size: 322
17645776 CCTGGCTTGC
* *
17645786 GCATTCTGCCTCTTCGGTAGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTTCGGTAGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACG
* *
17645851 CAGTTCATTCCATGTCTATGCCCCAGTCGGACTGAGGGTTATGGCAGCAGGACCGGCAGCGGGAT
66 CAGTTCATTCCATGTCTAAGCCCCAGTCGGAATGAGGGTTATGGCAGC--GA-CGGCAGC--G--
* * *
17645916 CGACAGCACGCAGAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCTGACCGGTTG
124 CGACAGCACGCAGAGGGGGACCGGGCTGATCCCAGACTTGCGCATTATGCCTCTCTGACCGGCTC
* ** * *
17645981 AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGATTTCATCCCCAGTGTAAGATCG
189 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAAGATCA
* * * * *
17646046 GACTGGGCTGAGGTTTGCGGCAGTAGGATCGACAGCACACAGAGGGGATCGAGCTAATCCCCAGT
254 GACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGATCGAGCTAATCCCCAGT
17646111 TTAT
319 TTAT
* * * * *
17646115 GCATTCTGCCTC-TCTGGTTGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGTATAG
1 GCATTCTGCCTCTTC-GGTAGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAC
* *
17646179 GGAGTTCATTCCATGTCTAAGCCCCAG-CTGAATCGAGGGTTATGGCAGC-A-GG-A-C-CGACA
65 GCAGTTCATTCCATGTCTAAGCCCCAGTCGGAAT-GAGGGTTATGGCAGCGACGGCAGCGCGACA
* * *
17646238 GCATGCAGAGGGGGACCGGGCTGATCCCCAG-CTTGCGCATTGTGCCTCT-TCGGCCGGCTCAGC
129 GCACGCAGAGGGGGACCGGGCTGAT-CCCAGACTTGCGCATTATGCCTCTCT-GACCGGCTCAGC
* * *
17646301 ACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAGATTAGAC
192 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAAGATCAGAC
* ** * * * * * *
17646366 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCG-GGTCGATCCCCGGCTT
257 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGATCGAGCT-AATCCCCAGTTT
**
17646430 GC
321 AT
* * *** * * * *
17646432 GCGTTCTACCTCTTCGACCGG-TAGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATGC
1 GCATTCTGCCTCTTCGGTAGGCT-GAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAC
*
17646496 GGAGTTCATTCCATGTCTAAGC
65 GCAGTTCATTCCATGTCTAAGC
17646518 ATACGGAGCT
Statistics
Matches: 344, Mismatches: 52, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
316 4 0.01
317 229 0.67
318 6 0.02
322 1 0.00
323 1 0.00
324 2 0.01
326 1 0.00
328 6 0.02
329 94 0.27
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (322 bp):
GCATTCTGCCTCTTCGGTAGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACG
CAGTTCATTCCATGTCTAAGCCCCAGTCGGAATGAGGGTTATGGCAGCGACGGCAGCGCGACAGC
ACGCAGAGGGGGACCGGGCTGATCCCAGACTTGCGCATTATGCCTCTCTGACCGGCTCAGCACCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAAGATCAGACCGGA
CCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGATCGAGCTAATCCCCAGTTTAT
Found at i:17646505 original size:158 final size:159
Alignment explanation
Indices: 17645905--17646507 Score: 621
Period size: 158 Copynumber: 3.8 Consensus size: 159
17645895 CAGCAGGACC
* * *
17645905 GGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGAT-CCCTGACTTGCGCATTATGCCTC
1 GGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAG-CTTGCGCATTCTGCCTC
* * ** * *
17645969 TCTGACCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGATTTCATCCCC
65 TCTGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * *
17646034 AGTGTAAGATCGGACTGGGCTGAGGTTTGC
130 AGTGTAAGATCAGACTGGACCGAGGGTTGT
* * * * * * **
17646064 GGCAGTAGGATCGACAGCACACAGA-GGGGATCGAGCTAATCCCCAGTTTATGCATTCTGCCTCT
1 GGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCT
*** * * * * *
17646128 CTGGTTGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATT-CCA
66 CTGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* ** * * *
17646192 TGTCTAAGCCCCAG-CTGAATCGAGGGTTAT
131 -GTGTAAG-ATCAGACTGGACCGAGGGTTGT
* * *
17646222 GGCAGCAGGACCGACAGCATGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTGTGCCTCT
1 GGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCT
* * *
17646287 -TCGGCCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCC
66 CT-GACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
17646351 AGTGTAAGATTAGACCGGACCGAGGGTTGT
130 AGTGTAAGATCAGACTGGACCGAGGGTTGT
* * * *
17646381 GGCAGCAGGATCGACAGCACGTAG-GGGGGACCGGG-TCGATCCCCGGCTTGCGCGTTCTACCTC
1 GGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCT-GATCCCCAGCTTGCGCATTCTGCCTC
* * *
17646444 T-TCGACCGG-TAGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTC
65 TCT-GACCGGCT-GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
17646507 C
128 C
17646508 ATGTCTAAGC
Statistics
Matches: 358, Mismatches: 77, Indels: 19
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.01
158 201 0.56
159 149 0.42
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
GGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCT
CTGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTGTAAGATCAGACTGGACCGAGGGTTGT
Found at i:17646524 original size:26 final size:26
Alignment explanation
Indices: 17646490--17646542 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17646480 GTTGGCTTAG
* *
17646490 GCATGCGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGCTCATTTCCA-GTCTAA
17646516 GCATACGGAGCTCATTTCCAGTCTAA
1 GCATACGGAGCTCATTTCCAGTCTAA
17646542 G
1 G
17646543 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTTCCAGTCTAA
Found at i:17647259 original size:26 final size:26
Alignment explanation
Indices: 17647223--17647301 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17647213 GTTGACTTAG
*
17647223 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17647249 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17647275 GCATACAGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17647301 G
1 G
17647302 ATCGGATCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17649102 original size:722 final size:720
Alignment explanation
Indices: 17647717--17649149 Score: 2197
Period size: 722 Copynumber: 2.0 Consensus size: 720
17647707 ATTGGCTTAG
*
17647717 GCATATGGAGTTCATTCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGGGCATGTG
1 GCATATGGAGTTCATTCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTG
** * ** * * * *
17647782 CTGGTGCCGCATTTTTTTTGCCCGGAGAATCGTCGGAGCATCGTTAGAGAGCCTAGCTGGTGGCA
66 CTGGTGCCGCATTTTTTTCACCCGGAGAATCGCCGGAGCATCGCCAAAGAGCCTAACCGGAGGCA
*** * ** * *
17647847 TTGGGAGTTCCGGGGGGATTGGGGGGGTCGGGGGGGTGTGCATACATGATGTGCGATGGGTGCTG
131 TTGGGAGTTCC-GAACGATT-GGGGGGACCAGGGGATGTGCACACATGATGTGCGATGGGTGCTG
** *
17647912 GTACTTGGGTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAAATCACTCCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAAATCACACCCCCTTAAAG
* *
17647977 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTT
259 AGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
17648042 TTCAAACGGTCACAAAAACTTCTCCACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAA
324 TTCAAACGATCACAAAAACTTCTCCACTTCGAGTTTTTAGCTAAATGTTTTTATGCATGCCAAAA
* *
17648107 AAAATACAAGGATCACCTCTTCCAAATTCTGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAAT
389 AAAATACAAGGATCACCTCTACCAAATTCTGGGACAAAAATCTTTCTAAAAAAATTTAAAAAAAT
* * *
17648172 CTCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTT
454 CCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTT
* ** * *
17648237 CACATGAAGGCTTAGGGGACCATTGTTTGAATTTACACTCCATAAAAATGGCATTGGCATGGCAG
519 CACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGGCAA
* *
17648302 AAATGTGAAGATGTGCTTGAACCCACCTACCACTCGTCCGATCCCCGGCTTACGCATCCTGCCTC
584 AAATATGAAGATGTGCTTGAACCCACCTACCACCCGTCCGATCCCCGGCTTACGCATCCTGCCTC
* ** *
17648367 TTTGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCA
649 TCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCA
17648432 TGTCTAA
714 TGTCTAA
*
17648439 GCATATGGAGTTCATTCACAGTCTAATATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGT
1 GCATATGGAGTTCATTC-CAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGT
17648504 GCTGGTGCCGCATTTTTTTCACCC-GAGGCACCATCGCCGGAGCATCGCCAAAGAGCCTAACCGG
65 GCTGGTGCCGCATTTTTTTCACCCGGA-G-A--ATCGCCGGAGCATCGCCAAAGAGCCTAACCGG
* * *
17648568 AGGCATTGGGGGTTCC-AACGATT-GGGGGACCAGGGGATGTGCGCACATGATGTGTGATGGGTG
126 AGGCATTGGGAGTTCCGAACGATTGGGGGGACCAGGGGATGTGCACACATGATGTGCGATGGGTG
* *
17648631 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
191 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAAATCACACCCCCTTA
*
17648696 AAGAGCATTTAAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
256 AAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
17648761 TTTTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCA
321 TTTTTCAAACGATCACAAAAACTTCTCCACTTCGAGTTTTTAGCTAAATGTTTTTATGCATGCCA
* *
17648826 AAAAAAATACAAGGATCACCTCTACCAAATTTTGGGACAAAACTCTTTCTAAAAAAATTTAAAAA
386 AAAAAAATACAAGGATCACCTCTACCAAATTCTGGGACAAAAATCTTTCTAAAAAAATTTAAAAA
* *
17648891 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAA
451 AATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAA
17648956 CTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGG
516 CTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGG
* ** * *
17649021 CAAAAATATGAAGATTTGCTTGAACCCACCTACCACCCGTTTGATCCCCGGCTTCCGCATCTTGC
581 CAAAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTCCGATCCCCGGCTTACGCATCCTGC
* * ** *
17649086 CTCTCTGGTCGGCTGAGCGCCCGTATGCTCATTTCGTGGGTTGACTTAGTTATACGGAGTTCAT
646 CTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
17649150 CCCCAATCTA
Statistics
Matches: 641, Mismatches: 65, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
722 528 0.82
723 68 0.11
724 5 0.01
726 40 0.06
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (720 bp):
GCATATGGAGTTCATTCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTTTCACCCGGAGAATCGCCGGAGCATCGCCAAAGAGCCTAACCGGAGGCA
TTGGGAGTTCCGAACGATTGGGGGGACCAGGGGATGTGCACACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAAATCACACCCCCTTAAAGAG
CATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAACGATCACAAAAACTTCTCCACTTCGAGTTTTTAGCTAAATGTTTTTATGCATGCCAAAAAA
AATACAAGGATCACCTCTACCAAATTCTGGGACAAAAATCTTTCTAAAAAAATTTAAAAAAATCC
CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCA
CATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGGCAAAA
ATATGAAGATGTGCTTGAACCCACCTACCACCCGTCCGATCCCCGGCTTACGCATCCTGCCTCTC
TGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATG
TCTAA
Found at i:17649613 original size:157 final size:159
Alignment explanation
Indices: 17649273--17649637 Score: 432
Period size: 157 Copynumber: 2.3 Consensus size: 159
17649263 CCTGCACATC
* * *
17649273 CATTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATT-CAATGTCTAAGCCCCAGCTGAACCGAGG
1 CATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCAA-GTCTAAGCACCAGATGAACCGAGG
* ** * * *
17649337 GTTGTGGTAGTGGGATCGATAGCATGCAGAAAGGGACCGGGCCGATCCCCTGCTTGCGCATTATG
65 GTTGCGGTAGCAGGATCGACAGCACGCAGAAAGGGACCGGGCCGATCCCCAGCTTGCGCATTATG
** *
17649402 CCTCTTTGACCGGCTCAGCGCCCGCACGCT
130 CCTCTCCGACCGGCTCAGCGCCCGCACACT
* * * * * *
17649432 CATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACCGAGG
1 CATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGAT-GAACCGAGG
** * * * *
17649496 GTTGCGGTAGCAGGATCGACAGCACGCAG-GGGGGA-CGGGTCGATCCGCAGCTTGTGCATTCTG
65 GTTGCGGTAGCAGGATCGACAGCACGCAGAAAGGGACCGGGCCGATCCCCAGCTTGCGCATTATG
* * *
17649559 CCTCTCCGGCTGGCTGAGCGCCCGCACACT
130 CCTCTCCGACCGGCTCAGCGCCCGCACACT
*
17649589 CGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCA
1 CATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCA
17649638 TACGGAGTTC
Statistics
Matches: 171, Mismatches: 32, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
157 89 0.52
158 9 0.05
159 71 0.42
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
CATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGATGAACCGAGGG
TTGCGGTAGCAGGATCGACAGCACGCAGAAAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGC
CTCTCCGACCGGCTCAGCGCCCGCACACT
Found at i:17649645 original size:26 final size:26
Alignment explanation
Indices: 17649609--17649661 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17649599 GTTGGCTTAG
17649609 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
17649635 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
17649661 G
1 G
17649662 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:17656256 original size:26 final size:26
Alignment explanation
Indices: 17656226--17656276 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17656216 TGACTTAGGA
* *
17656226 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAAAGTTCATCCCCAATCTAAGC
*
17656252 ATACAAAGTTCATTCCCAATCTAAG
1 ATACAAAGTTCATCCCCAATCTAAG
17656277 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (26 bp):
ATACAAAGTTCATCCCCAATCTAAGC
Found at i:17656609 original size:159 final size:159
Alignment explanation
Indices: 17656258--17656740 Score: 406
Period size: 159 Copynumber: 3.1 Consensus size: 159
17656248 AAGCATACAA
* * * * *
17656258 AGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGG-TG-A-CAACAGGATCGACAGCACAC-A
1 AGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACAACACGCAA
* * * ** * * * * * *
17656319 GGGGGGACCGATCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGTACGC
66 AGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGCTTGAGCACCCGCACAC
* * * * * *
17656384 CCATTTCGTGGCTTGGCTTAGGCAAAGGG
131 TCGTTTCGTGGATTGACTTAGGCATACGG
* ** ** * ** ** * *
17656413 AGTTCATT-CCATGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGGCAGTGGGATCGACAACCCGT
1 AGTTCATTCCCA-ATCTAAG-ATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACAACACGC
*
17656476 AAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGACTT-AGCACCCGCA
64 AAAGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCG-CTTGAGCACCCGCA
* *
17656540 CACTTGTTTTGTGGATTGACTTAGGCATATC-G
128 CACTCGTTTCGTGGATTGACTTAGGCATA-CGG
* * **
17656572 AGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCGG
1 AGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACAACACGCAA
* * * * * * ** *
17656637 GGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGTGCCCGCACGC
66 AGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGCTTGAGCACCCGCACAC
* *
17656702 TCGTTTCGTGGGTTGGCTTAGGCATACGG
131 TCGTTTCGTGGATTGACTTAGGCATACGG
17656731 AGTTCATTCC
1 AGTTCATTCC
17656741 ATGTTAAGCA
Statistics
Matches: 252, Mismatches: 64, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
154 3 0.01
155 24 0.10
156 4 0.02
158 19 0.08
159 197 0.78
160 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
AGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACAACACGCAA
AGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGCTTGAGCACCCGCACAC
TCGTTTCGTGGATTGACTTAGGCATACGG
Found at i:17657105 original size:26 final size:26
Alignment explanation
Indices: 17657075--17657127 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17657065 GTTGACTTAG
17657075 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
17657101 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17657127 G
1 G
17657128 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17657286 original size:184 final size:185
Alignment explanation
Indices: 17656916--17657273 Score: 454
Period size: 184 Copynumber: 1.9 Consensus size: 185
17656906 GTTGGCTTAG
* * * *
17656916 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTTGCGACAGTAGGACCGACA
* * * * * *
17656981 GCACGCAGAGAGGGACCGGGCTGATCCTCGGCTTATGCATTATGCCTCTTCGGCCGGCTGAGCGC
66 GCACGCAGAGAGGGACCGGGCCGATCCTCAGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCAC
17657046 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
* * *
17657101 GCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGACCGGATCGAGGGTTGCGACAGTAGGATCTG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACCGAGGGTTGCGACAGTAGGA-CCG
* * * * **
17657164 -CAGCACGTAG-GGGGGACCGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGTTCGGCTAAG
63 ACAGCACGCAGAGAGGGACCGGGCCGATCCTCAGCTTACGCATTATGCCTCTCCGGCCGGCTAAG
* * * *
17657227 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
128 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
17657274 TCCATGTCTA
Statistics
Matches: 147, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
184 88 0.60
185 53 0.36
186 6 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTTGCGACAGTAGGACCGACA
GCACGCAGAGAGGGACCGGGCCGATCCTCAGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCAC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
Found at i:17657328 original size:343 final size:342
Alignment explanation
Indices: 17656479--17657330 Score: 966
Period size: 352 Copynumber: 2.5 Consensus size: 342
17656469 AACCCGTAAA
* * * * * * *
17656479 GGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGACTTAGCACCCGCACACT
1 GGGGGACCGGGCCGATCCTC-GCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCT
* * * * * ** *
17656544 TGTTTTGTGGATTGACTTAGGCATATC-GAGTTCATTCCCA-ATCTAAGATCAGACCGGACTGAG
65 CGTTTCGTGGGTTGGCTTAGGCATA-CGGAGTTCATT-CCATGTCTAAGCCCAG-CCGGACCGAG
** * * * * * * *
17656607 GGTTGCAGTAGCAGGATCGACAGCACGCGGGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCT
127 GGTTGTGGCAGTAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCTCGGCTTACGCATTAT
* * * * *
17656672 GCCTCTCTGGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
192 GCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCA
* * *
17656737 TTCCATGTTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGACGGACTGAGGGTTGCGGCAGTA
257 TCCCATGCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGACGGACTGAGGGTT--GGC---A
17656802 GGACCAGTAGTAGGATCAGCAGCACACAG
317 -GACCA--AGTAGGATCAGCAGCACACAG
* * * *
17656831 GAGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGCACGCT
1 GGGGGACCGGGCCGATCCTCG-CTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCT
* *
17656896 CGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACCGAGGG
* * * *
17656961 TTGTGGCAGTAGGACCGACAGCACGCAGAGAGGGACCGGGCTGATCCTCGGCTTATGCATTATGC
129 TTGTGGCAGTAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCTCGGCTTACGCATTATGC
17657026 CTCT-TCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
194 CTCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
*
17657090 CCCCAAT-CTAAGCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGA-TCGAGGGTT-GC-G
258 -CCC-ATGCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-AGA-CGGACT-GAGGGTTGGCAG
* **
17657151 A-C-AGTAGGATCTGCAGCACGTAG
318 ACCAAGTAGGATCAGCAGCACACAG
**
17657174 GGGGGACCGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGTTCGGCTAAGCACCCGCACGCT
1 GGGGGACCGGGCCGATCCTC-GCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCT
* *
17657239 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCGAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGCCGGACCGAGGG
* * *
17657304 TTGTGGCAGTGGGATTGGCAGCACGCA
129 TTGTGGCAGTAGGATCGACAGCACGCA
17657331 ACGAGGATCG
Statistics
Matches: 429, Mismatches: 59, Indels: 33
0.82 0.11 0.06
Matches are distributed among these distances:
342 3 0.01
343 155 0.36
344 1 0.00
346 1 0.00
347 2 0.00
351 6 0.01
352 209 0.49
353 36 0.08
354 5 0.01
355 11 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (342 bp):
GGGGGACCGGGCCGATCCTCGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTT
GTGGCAGTAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCTCGGCTTACGCATTATGCCT
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCC
ATGCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGACGGACTGAGGGTTGGCAGACCAAGTA
GGATCAGCAGCACACAG
Found at i:17658499 original size:26 final size:26
Alignment explanation
Indices: 17658469--17658521 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17658459 GTTGACTTAG
17658469 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
17658495 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17658521 G
1 G
17658522 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17658924 original size:159 final size:157
Alignment explanation
Indices: 17658495--17659314 Score: 772
Period size: 159 Copynumber: 5.2 Consensus size: 157
17658485 CCCAGTCTAA
* * *
17658495 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
17658559 AGTATGCAGGGGGGACCAGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGTCGACTGAGCAC
65 AGCATGCA-GGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGC
*
17658624 CCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * *
17658653 GCATA-GGTAGTTCATT-CATGTCTAAG-CCCCAGTTGGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGG-AGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
17658715 CAGCATGCAGAGAGGGACCGGGTCGGTCCCCGACTTGTGCATTATGCCTCTCCGGCCAGCTCAGC
64 CAGCATGCAG-G-GGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGC
*
17658780 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
17658811 GCATACGAAGTTCATTTCCA-GTCTAAGATCGGACCGGACCAAGGGTTGCGACAGTAGGATTGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* ** ** * * *
17658875 AGCATGCAGGGGGACCAGACCGATCCCCCCGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCA
65 AGCATGCAGGGGGACCGGGTCGAT--CCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
17658940 CCCGTACACCCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * * * * *
17658970 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCAGACCGATGGTTGTGGTAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * *
17659034 AGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGTCTCTCCGACTGGCTCAGCG
65 AGCATGC--AGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
17659099 CCCGCACGCTCATTTCATGGGTTGACTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
17659129 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * ** * * * **
17659193 AGCACGCAGGAGGGGACTGGGTCGATCCCCGACGTACGCATTCTGCCTTTTCGACCGGCTGAAAG
65 AGCATGCA-G-GGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCG
*
17659258 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
17659288 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17659315 CATACGGAGT
Statistics
Matches: 528, Mismatches: 114, Indels: 39
0.78 0.17 0.06
Matches are distributed among these distances:
156 5 0.01
157 55 0.10
158 104 0.20
159 342 0.65
160 7 0.01
161 15 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:17659086 original size:318 final size:317
Alignment explanation
Indices: 17658495--17659315 Score: 1071
Period size: 318 Copynumber: 2.6 Consensus size: 317
17658485 CCCAGTCTAA
* ** *
17658495 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGA-AGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** *
17658559 AGTATGCAGGGGGGACCAGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGG-TCGACTGAGCA
65 AGCATGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCT-GGCTGAGCA
* *
17658623 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGTAGTTCATT-CATGTCTAAGCCCCAGTT
129 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * *
17658687 GGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGAGGGACCGGGTCGGTCCCCGACTTG
194 AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCCGATCCCCGACTTG
* *
17658752 TGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
259 TGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * *
17658811 GCATACGAAGTTCATTTCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGTAGGATTGACA
1 GCATACGAAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
**
17658876 GCATGCA-GGGGGACCAGACCGATCCCCCCGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCA
66 GCATGCAGGGGGGACCAGGTCGAT--CCCCGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCA
* * *
17658940 CCCGTACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * *
17659005 AGACCGATGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTG
194 AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCCGATCCCCGACTTG
* **
17659070 TGCATTATGTCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
259 TGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * *
17659129 GCATACGGAGTTCA-TTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGAAGTTCATTTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* ** * * * * * *
17659193 AGCACGCAGGAGGGGACTGGGTCGATCCCCGACGTACGCATTCTGCCT-TTTCGACCGGCTGA-A
65 AGCATGCAGG-GGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCT-GGCTGGCTGAGC
* * *
17659256 AGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 A-CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17659316 ATACGGAGTT
Statistics
Matches: 436, Mismatches: 59, Indels: 18
0.85 0.12 0.04
Matches are distributed among these distances:
315 14 0.03
316 61 0.14
317 83 0.19
318 266 0.61
319 1 0.00
320 11 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (317 bp):
GCATACGAAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCACC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCCGATCCCCGACTTGTG
CATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:17659324 original size:26 final size:26
Alignment explanation
Indices: 17659288--17659340 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17659278 GTTGGCTTAG
17659288 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17659314 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17659340 G
1 G
17659341 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17659698 original size:26 final size:26
Alignment explanation
Indices: 17659669--17659721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17659659 GTTGACTTAG
*
17659669 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
17659695 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17659721 G
1 G
17659722 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17659841 original size:184 final size:182
Alignment explanation
Indices: 17659630--17660261 Score: 597
Period size: 184 Copynumber: 3.4 Consensus size: 182
17659620 CTCTCCGGCT
* * *
17659630 GGTTGAACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTCTA
1 GGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTA
* * *
17659694 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGTAGCAGGATCGAC
65 AGCATAC-GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGTAGCAGGATCGAC
* ** *
17659759 AGCACGTAGGGGGGATCGGGTCGGTCCCCGTCTTGCTTATTCTACCTCTCTGTTC
129 AGCACGTAGGGGGGATCGGGTCGATCCCCGTCTTGCACATTCTGCCTCTCTG-TC
* * * *
17659814 GGCTGAGCGCTCATACGCTCGTTTCGTGGGTTGGA-TTAGGCATACGAAGTTCATTCCATGTCTA
1 GGTTGAGCGCCCACACGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCATGTCTA
* * * *
17659878 AGCATACGAAGTTCATTTCCAGTCTCAGATTAGACCGGACCAAGGGTTG-AGATAATAGGACCAA
65 AGCATACG-AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAG----TA-G--C--
* * * * * *
17659942 TAGCAAGATCGACAGCACATAAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGTCTCTTT
120 -AG---GATCGACAGCACGT-AGGGGGGATCGGGTCGATCCCCGTCTTGCACATTCTGCCTCTCT
17660007 GATC
180 G-TC
* * * ** * **
17660011 AGTTGAGCACCCACACACTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCGGTCTAA
1 GGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * *
17660076 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTTGCGGCAGCAGGATAGGCA
66 GCATAC-GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGTAGCAGGATCGACA
* * * * * *
17660141 GCACGTAGGGGGGATCGAGTCGAT-CTCTTGCTGGCGCATTCTGCCTCTCTGGC
130 GCACGTAGGGGGGATCGGGTCGATCCCCGT-CTTGCACATTCTGCCTCTCTGTC
* * * *
17660194 AGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 -GGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
17660259 AGC
65 AGC
17660262 CCCAGCGAGA
Statistics
Matches: 355, Mismatches: 71, Indels: 44
0.76 0.15 0.09
Matches are distributed among these distances:
183 10 0.03
184 176 0.50
185 13 0.04
187 2 0.01
188 3 0.01
190 1 0.00
191 1 0.00
193 3 0.01
194 1 0.00
196 15 0.04
197 128 0.36
198 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (182 bp):
GGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
GCATACGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAG
CACGTAGGGGGGATCGGGTCGATCCCCGTCTTGCACATTCTGCCTCTCTGTC
Found at i:17659884 original size:26 final size:26
Alignment explanation
Indices: 17659853--17659902 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17659843 GTTGGATTAG
17659853 GCATACGAAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
17659879 GCATACGAAGTTCATTTCCAGTCT
1 GCATACGAAGTTCATTTCCAGTCT
17659903 CAGATTAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:17660086 original size:26 final size:26
Alignment explanation
Indices: 17660050--17660102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17660040 GTTGACTTAG
*
17660050 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17660076 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17660102 G
1 G
17660103 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17660123 original size:197 final size:196
Alignment explanation
Indices: 17659746--17660123 Score: 454
Period size: 197 Copynumber: 1.9 Consensus size: 196
17659736 AGGGTTGCAG
* * * * * * **
17659746 TAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGGTCCCCGTCTTGCTTATTCTACCTCTCTG
1 TAGCAAGATCGACAGCACATAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCTG
* * * * * * * * *
17659811 TTCGGCTGAGCGCTCATACGCTCGTTTCGTGGGTTGGATTAGGCATACGAAGTTCATTCCATGTC
66 ATCAGCTGAGCACCCACACACTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCATCCCAGGTC
* *
17659876 TAAGCATACGAAGTTCATTTCCAGTCTCAGATTAGACCGGACCAAGGGTTGAGATAATAGGACCA
131 TAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGAGATAATAGGACCA
17659941 A
196 A
** *
17659942 TAGCAAGATCGACAGCACATAAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGTCTCTTT
1 TAGCAAGATCGACAGCACAT-AGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCT
* * * *
17660007 GATCAGTTGAGCACCCACACACTCGTTTTATGGGTT-GACTTAGGCATACGGAGTTCATCCCCGG
65 GATCAGCTGAGCACCCACACACTCGTTTCATGGGTTGGA-TTAGGCATACGAAGTTCATCCCAGG
* * *
17660071 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT-GAACCGGATCGAGGGTTG
129 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTAG-ACCGGACCAAGGGTTG
17660124 CGGCAGCAGG
Statistics
Matches: 150, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
196 21 0.14
197 129 0.86
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (196 bp):
TAGCAAGATCGACAGCACATAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCTG
ATCAGCTGAGCACCCACACACTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCATCCCAGGTC
TAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGAGATAATAGGACCA
A
Found at i:17660423 original size:26 final size:26
Alignment explanation
Indices: 17660393--17660445 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17660383 ATTGACTTAG
17660393 GCATACAGAGTTCA-TCACCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
17660419 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17660445 G
1 G
17660446 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17660577 original size:343 final size:342
Alignment explanation
Indices: 17659951--17660969 Score: 1273
Period size: 343 Copynumber: 3.0 Consensus size: 342
17659941 ATAGCAAGAT
* * * **
17659951 CGACAGCACATA-AGAGGGGA-TCGGGCCGATCCCCGGCTTGCACATTCTGTCTCTTTGATCAGT
1 CGACAGCACATAGAG-GGGGACT-GGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCTGATTGGT
* * *
17660014 TGAGCACCCACACACTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCGGTCTAAGCA
63 TGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
** * *
17660079 TACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTTGCGGCAGCAGGATAGGCAGCA
128 TACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * ** ** *
17660144 CGTAGGGGGGATCGAG-TCGATCTCTTGCTGGCGCATTCTGCCTCTCTGGCAGGTTGAGCGCCCG
193 CGTAGGGGGGACCGGGCT-GATCCCCGGCTTACGCATTCTACCTCTCTGGCAGGTTGAGCGCCCG
* **
17660208 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGAGA
257 CACACCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG-GA
*
17660272 CCGAGGGTTGTGGCAGCGAGAC
321 TCGAGGGTTGTGGCAGCGAGAC
* *
17660294 CGACAGCACTTAGAGGGGGACTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGATTGGTTG
1 CGACAGCACATAGAGGGGGACTGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCTGATTGGTTG
* * ** * *
17660359 AGCGCCCACACGCTCATTTCATGCATTGACTTAGGCATACAGAGTTCATCACCAGTCTAAGCATA
65 AGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * *
17660424 CGGAGTTCATTCCCAGTCTAAGATCAAACCGAATTGAGGGTTGTGGCAGCAGGATCGACAGCACG
130 CGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * **
17660489 TAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTACCTCTCTGACCGACTGAGCGCCCGCAC
195 TAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTACCTCTCTGGCAGGTTGAGCGCCCGCAC
* *
17660554 ACCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCGGATCAA
260 ACCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGA
* *
17660619 GGGTTGTGGCAGTGGGAC
325 GGGTTGTGGCAGCGAGAC
* ** * * * * *
17660637 CGACAGCA-AGCAGAAAGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACTGATT
1 CGACAGCACA-TAGAGGGGGACTGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCTGATTGGTT
* * *
17660701 GAGCACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCAT
64 GAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * * * *
17660766 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAAGATCGATAGCAC
129 ACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* ** *
17660831 GTAGGGGGG-CCAGGCCT-ATCCCCGGCTTACGCATTCTACCTCT-TCGGTTGGTTGAGTGCCCG
194 GTAGGGGGGACC-GGGCTGATCCCCGGCTTACGCATTCTACCTCTCT-GGCAGGTTGAGCGCCCG
** *
17660893 CA-TGCTCATTTCGTGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGCCGGA
257 CACACCT-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
*
17660957 TTGAGGGTTGTGG
321 TCGAGGGTTGTGG
17660970 TAGCAGGACC
Statistics
Matches: 583, Mismatches: 83, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
341 3 0.01
342 110 0.19
343 464 0.80
344 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (342 bp):
CGACAGCACATAGAGGGGGACTGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCTGATTGGTTGA
GCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGT
AGGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTACCTCTCTGGCAGGTTGAGCGCCCGCACA
CCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
GGTTGTGGCAGCGAGAC
Found at i:17660766 original size:26 final size:26
Alignment explanation
Indices: 17660736--17660788 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17660726 GTTGACTTAG
17660736 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
17660762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17660788 G
1 G
17660789 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17661246 original size:26 final size:26
Alignment explanation
Indices: 17661216--17661268 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17661206 GTTGGCTTAG
17661216 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
17661242 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
17661268 G
1 G
17661269 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:17661770 original size:26 final size:26
Alignment explanation
Indices: 17661740--17661792 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17661730 TTTAGCTTAG
*
17661740 GCATACGAAGTTC-ATTCCATGTCTAA
1 GCATACGAAGTTCAATCCCA-GTCTAA
*
17661766 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
17661792 G
1 G
17661793 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:17662803 original size:159 final size:159
Alignment explanation
Indices: 17662574--17662990 Score: 565
Period size: 159 Copynumber: 2.6 Consensus size: 159
17662564 GACCAGGCCT
* ** *
17662574 ATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCCCGTTTCGTGGGTTG
1 ATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
* * * *
17662639 GCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCGGG
66 ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGACCAGACTGAGGGTTGTGGTAGCAGG
17662703 ACCGACAGCACGCAGAGGGGGATCGAGTAG
131 ACCGACAGCACGCAG-GGGGGATCGAGTAG
* * * *
17662733 ATCCCCAGCTTGTGCATTAC-GCCTCTCCGATCGACTGAGTGCTCGCACGCTCATTTCGTGGGTT
1 ATCCCCAGCTTGTGCATT-CTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTT
* *
17662797 GACTTAGGCATACGGAGTTCATTCCCAA-TATAA-CATCAGACCAGACTGAGGGTTGTGGTAGCA
65 GACTTAGGCATACGGAGTTCATT-CCAAGTCTAAGCACCAGACCAGACTGAGGGTTGTGGTAGCA
* * *
17662860 GGATCGACAGCACGCAGGGGGGATCGGGTCG
129 GGACCGACAGCACGCAGGGGGGATCGAGTAG
* * *
17662891 GTCCCCGGCTTGTGCATTCTGCCTCTCCGATC-AGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
1 ATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGA-CTGAGCGCCCGTACGCTCGTTTCGTGGGTT
* *
17662955 GCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCA
17662991 TATGGAGTTC
Statistics
Matches: 224, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
157 5 0.02
158 95 0.42
159 119 0.53
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
ATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGACCAGACTGAGGGTTGTGGTAGCAGG
ACCGACAGCACGCAGGGGGGATCGAGTAG
Found at i:17662961 original size:158 final size:158
Alignment explanation
Indices: 17662487--17662979 Score: 582
Period size: 158 Copynumber: 3.1 Consensus size: 158
17662477 CAAAATCTAA
* * * * * ** * *
17662487 GCATACAGAGTTCATTCCCAGTCTAAGATC-GAACCGGACAGAGGGTTACGGTAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAATCTAACATCAG-ACCAGACTGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * **
17662551 AGCACGCAAGAGGGACCAGGCCTATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGC
* *
17662616 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGACTTAG
* ** * *
17662645 GCATAGGGAGTTCATT-CCAAGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCAA-TCTAA-CATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGA
* * *
17662708 CAGCACGCAGAGGGGGATCGAGTAGATCCCCAGCTTGTGCATTAC-GCCTCTCCGATCGACTGAG
64 CAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGTGCATT-CTGCCTCTCCGATCGACTGAG
* * * *
17662772 TGCTCGCACGCTCATTTCGTGGGTTGACTTAG
127 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
*
17662804 GCATACGGAGTTCATTCCCAATATAACATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAACATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACA
*
17662869 GCACGCAGGGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCGATC-AGCTGAGCGC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGA-CTGAGCGC
* *
17662933 CCGTACGCTCGTTTCATGGGTTGCCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGACTTAG
17662962 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
17662980 ATGTCTAAGC
Statistics
Matches: 279, Mismatches: 47, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
157 5 0.02
158 143 0.51
159 125 0.45
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAACATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCC
CGTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17663012 original size:26 final size:26
Alignment explanation
Indices: 17662962--17663014 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17662952 GTTGCCTTAG
**
17662962 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
* *
17662988 GCATATGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCACATCTAA
17663014 G
1 G
17663015 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:17663192 original size:195 final size:196
Alignment explanation
Indices: 17662859--17663221 Score: 516
Period size: 195 Copynumber: 1.9 Consensus size: 196
17662849 TTGTGGTAGC
* * * *
17662859 AGGATCGACAGCACGCAGGGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCGATCA
1 AGGATCGACAACACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCA
* * *
17662924 GCTGAGCGCCCGTACGCTCGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTAAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAG
* * *
17662989 CATATGGAGTTCATTCCCCATCTAAGATCAGACCGGACCAAGGCTTACGGTAGCAAGACCAGCAG
131 CATATGGAGTTCATTCCCAACCTAAGATCAAACCGGACCAAGGCTTACGGTAGCAAGACCAGCAG
17663054 T
196 T
* * *
17663055 AGGATCGATAACACGCAGGGGGGA-CTGGGTCGATCCCCAGCTTGCGTATTCTGCCTCTTCGA-C
1 AGGATCGACAACACGCAGGGGGGATC-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATC
* * * * *
17663118 CGGTAAGCGCCCGTACTCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
65 AGCTAAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTA
*
17663182 AGCATATGGAGTTTATTCCCAACCTAAGATCAAACCGGAC
129 AGCATATGGAGTTCATTCCCAACCTAAGATCAAACCGGAC
17663222 TGAGGGTTGC
Statistics
Matches: 146, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
195 90 0.62
196 56 0.38
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (196 bp):
AGGATCGACAACACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCA
GCTAAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAG
CATATGGAGTTCATTCCCAACCTAAGATCAAACCGGACCAAGGCTTACGGTAGCAAGACCAGCAG
T
Found at i:17664207 original size:26 final size:26
Alignment explanation
Indices: 17664178--17664230 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17664168 GTTAACTTAG
17664178 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
*
17664204 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17664230 G
1 G
17664231 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17664492 original size:159 final size:159
Alignment explanation
Indices: 17664291--17664707 Score: 498
Period size: 159 Copynumber: 2.6 Consensus size: 159
17664281 GACCAGGCTT
** * * *
17664291 ATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGTGCCCGCACTCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTG
* * * * * *
17664356 GCTTAGGCATAGGGAGTTCGTTCCAAGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCGGG
66 ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGACCAGACCGAGGGTTGTGGTAGCAGG
* * *
17664420 ACCGATAGCACGCAAAGGGGGATCGGGTCG
131 ACCGACAGCACGC-AAGGGGGATCGAGACG
* * * * *
17664450 ATCCCCAGCTTGTGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTG
1 ATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTG
* * * *
17664515 ACTTAGGCATACGGAGTTCATTCCCAA-TTTAA-CATCAGATCGGACCGAGGGTTGTGGTAGCAG
66 ACTTAGGCATACGGAGTTCATT-CCAAGTCTAAGCACCAGACCAGACCGAGGGTTGTGGTAGCAG
** *
17664578 GTTCGACAGCACGCAGGGGGGATCGAGACG
130 GACCGACAGCACGCAAGGGGGATCGAGACG
* * * **
17664608 GTCCCCGGCTTGTGCATTCTACCTCTCCGATCGACTGAGCGCCCATACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTG
* *
17664673 CCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCA
17664708 TACGGAGTTC
Statistics
Matches: 215, Mismatches: 39, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
157 3 0.01
158 97 0.45
159 111 0.52
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
ATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGACCAGACCGAGGGTTGTGGTAGCAGG
ACCGACAGCACGCAAGGGGGATCGAGACG
Found at i:17664729 original size:26 final size:26
Alignment explanation
Indices: 17664679--17664731 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17664669 GTTGCCTTAG
**
17664679 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
*
17664705 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCACATCTAA
17664731 G
1 G
17664732 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:17664904 original size:195 final size:196
Alignment explanation
Indices: 17664571--17665085 Score: 504
Period size: 195 Copynumber: 2.7 Consensus size: 196
17664561 GAGGGTTGTG
** * * *
17664571 GTAGCAGGTTCGACAGCACGCAGGGGGGATCGAGACGGTCCCCGGCTTGTGCATTCTACCTCTCC
1 GTAGCAGCATCGACAGCACGCAGAGGGGATCGAGACGATCCCCGGCTTGCGCATTCTACCTCTCC
* * * * *
17664636 GATCGACTGAGCGCCCATACGCTCGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGACTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
17664701 CTAAGCATACGGAGTTCATTCCCCA-TCTAAGATCAGACTGGACCAAGGCTTACGGTAGCAAGAC
131 CTAAGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACTGGACCAAGGCTTACGGTAGCAAGAC
17664765 CA
195 CA
** * * *
17664767 GTAGCAGCATCGACAGCACGCAGAGGGGATCGAGTTGATCCCCGGCTTGCGTATTCTGCCTCTTC
1 GTAGCAGCATCGACAGCACGCAGAGGGGATCGAGACGATCCCCGGCTTGCGCATTCTACCTCTCC
* * *
17664832 GACCG-GTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
66 GACCGACTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATG
* * ** * * *
17664895 TCTAAGCATATGGAGTTTATTCCCAGTCTAAGATCA-A----ACC-AGGCCGAGGGTTGC--G-G
130 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGCTTACGGTAGCAAGAC
17664951 CA
195 CA
* * * * * *
17664953 GTAG--G-ATCGATAGGACGCAGGGGGGACCGAGCCGATCTCCGGCTTGCGCATTCTACCTCTCC
1 GTAGCAGCATCGACAGCACGCAGAGGGGATCGAGACGATCCCCGGCTTGCGCATTCTACCTCT-C
* * * ** * * * * * * *
17665015 CG-TCGGCTGAGCGCCCGGACGCCCGTTGCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATG
65 CGACCGACTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATG
17665079 TCTAAGC
130 TCTAAGC
17665086 CCCAGTCGGA
Statistics
Matches: 269, Mismatches: 45, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
183 51 0.19
184 55 0.20
186 6 0.02
187 1 0.00
189 10 0.04
190 3 0.01
194 5 0.02
195 76 0.28
196 62 0.23
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (196 bp):
GTAGCAGCATCGACAGCACGCAGAGGGGATCGAGACGATCCCCGGCTTGCGCATTCTACCTCTCC
GACCGACTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGCTTACGGTAGCAAGACC
A
Found at i:17664910 original size:26 final size:26
Alignment explanation
Indices: 17664874--17664926 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17664864 GTTGACTTAG
17664874 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17664900 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17664926 G
1 G
17664927 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17665206 original size:159 final size:158
Alignment explanation
Indices: 17664938--17665244 Score: 409
Period size: 159 Copynumber: 1.9 Consensus size: 158
17664928 TCAAACCAGG
** * * * *
17664938 CCGAGGGTTGCGGCAGTAGGATCGATAGGACGCAGGGGGGACCGAGCCGATCTCCGGCTTGCGCA
1 CCGAGGGTTGCGGCAACAGGACCGATAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCA
* * * *
17665003 TTCTACCTCTCCCGTCGGCTGAGCGCCCGGACGCCCGTTGCGTGGGTTGGCTTAGGTATAGGGAG
66 TTCTACCTCTCCCGCCGGCTGAGCGCCCGCACGCCCGTTGCGTGGGTTGGCTTAGGCATACGGAG
17665068 TTCATTCCATGTCTAAGCCCCAGTCGGA
131 TTCATTCCATGTCTAAGCCCCAGTCGGA
* * * * *
17665096 CCGAGGGTTGTGGCAACAGGACCGGTAGCACGTAGAGGGGGACCGGGCTGATCCCCAGCTTGCGC
1 CCGAGGGTTGCGGCAACAGGACCGATAGCACGCAG-GGGGGACCGAGCCGATCCCCAGCTTGCGC
* ** * *
17665161 ATTCTGCCTCT-CCGACCGGCTGAGCGCTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
65 ATTCTACCTCTCCCG-CCGGCTGAGCGCCCGCACGCCCGTTGCGTGGGTTGGCTTAGGCATACGG
17665225 AGTTCATTCCATGTCTAAGC
129 AGTTCATTCCATGTCTAAGC
17665245 ATATAGAGTT
Statistics
Matches: 127, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
158 31 0.24
159 96 0.76
ACGTcount: A:0.16, C:0.28, G:0.34, T:0.22
Consensus pattern (158 bp):
CCGAGGGTTGCGGCAACAGGACCGATAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCA
TTCTACCTCTCCCGCCGGCTGAGCGCCCGCACGCCCGTTGCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGTCGGA
Found at i:17665931 original size:26 final size:26
Alignment explanation
Indices: 17665895--17665947 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17665885 GTTGACTTAG
17665895 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
17665921 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
17665947 G
1 G
17665948 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:17666225 original size:159 final size:155
Alignment explanation
Indices: 17666015--17666444 Score: 413
Period size: 152 Copynumber: 2.7 Consensus size: 155
17666005 TTGCAAATTC
* * * *
17666015 TGCCTCTCCGGTCGGCTCAGCGCTCGTACGCCCGTTTCATGGGTTCGCTTAGGCATAGGGAGTTC
1 TGCCTCTCC-GTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTT-GCTTAGGCATA-AGAGTTC
* ** * * *
17666080 ATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGATTGGCAGCACATAGAGGGG
63 ATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAG-GGGG
* * *
17666145 AATCGGGTCGATCCTCGGCTTACGCATTA
127 AATCAGGCCGATCCCCGGCTTACGCATTA
* * *
17666174 TGCCTCTCCGATTGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCA
1 TGCCTCTCCG-TCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTG-CTTAGGCATAAGAGTTCA
* * * * * *
17666239 TTCCCA-GTCTAAG----A-TCAGACTGAGGGTTGAGGTAGCAGGATCGACAGCACGCAGGGGGG
64 TT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGA
* *
17666298 ATCAGGCCGGTCCCCGGCTTACGCATTC
128 ATCAGGCCGATCCCCGGCTTACGCATTA
* * * * * *
17666326 TGCCTCTCTTGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAAACTTC
1 TGCCTCTC-CGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTT-GCTTAGGCATA-AGAGTTC
* * * * *
17666391 ATTCCATGTCCAAGCCCCAGTTGGACCGAGGGTTGTGGTAACAGGACCGACAGC
63 ATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
17666445 GAGATTGGCA
Statistics
Matches: 220, Mismatches: 39, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
152 77 0.35
153 44 0.20
154 1 0.00
157 1 0.00
158 46 0.21
159 51 0.23
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (155 bp):
TGCCTCTCCGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGCTTAGGCATAAGAGTTCATT
CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGAATC
AGGCCGATCCCCGGCTTACGCATTA
Found at i:17666592 original size:26 final size:26
Alignment explanation
Indices: 17666562--17666614 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17666552 GTTGACTTAG
17666562 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
17666588 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17666614 G
1 G
17666615 ATCAGACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17667091 original size:26 final size:26
Alignment explanation
Indices: 17667062--17667114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17667052 GTTGGCTTAG
17667062 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
17667088 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17667114 G
1 G
17667115 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17667568 original size:501 final size:500
Alignment explanation
Indices: 17666511--17667626 Score: 1217
Period size: 501 Copynumber: 2.2 Consensus size: 500
17666501 TATCCGGTCA
* ** * * * *
17666511 ACCTCTTCGACCTGCTGAGTGCCCATAAGCTGGTTTCATGGGTTGACTTAGGCATACGAAGTTCA
1 ACCTCTCCGACCAACTGAGTGCCCGTAAGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * *** * *
17666576 TCCCCA-GTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACTAAATTGAAGGTTGTGAC
66 T-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTCAAGGTTGAGAC
* * * * * * * * * *
17666640 AGTAGGATCACAGCATGTAAGGGGGATCGGGCTGATCCCTAGCTTGTGCATTCTGCCTCTCTGGC
130 AGTAGGATCACAACACGCAAGGGGGACCGGGCTGAACCCCAGCTAGCGCATTCTGCCTCCCTAGC
* * * *
17666705 TAGCTGAATGCCTACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
195 GAGCTGAATGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATATCTA
* * * ** * *
17666770 AGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGACCGACAGAACATAGAGAGGGATCGAGCTGAT
260 AGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGAACACAGAGAGGGATCGAGCCGAT
* * * ** ** * *
17666835 CCTCGGCTTACGCGTTATGCCTTTCTGGCTGGCTCAGCGTCCGAACATTCGTTTCATGGGTTGAC
325 CCTCAGCTTACGCATTATGCCTCTCCAGCCAGCTCAGCGCCCAAACATTCGTTTCATGGGTTGAC
** * *
17666900 TTAGGCATACGGAGTTCATTCCCTGTCTAAGATTTGACCGTACCGAGGGTTGCGATAGCAGGATA
390 TTAGGCATACGGAGTTCATTCCCAATCTAAGATTCGACCGGACCGAGGGTTGCGATAGCAGGATA
* *
17666965 GATAGCACGCAAGGGGGACCGGATCGATCCCTGGCTTACGCATTCT
455 GACAGCACGCAAGGGGGACCGGATCGATCCCTAGCTTACGCATTCT
***** * * * * *
17667011 ACCTCTCCGGTTGGCTGAATGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAA
1 ACCTCTCCGACCAACTGAGTGCCCGTAAGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
17667076 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCAAGGGTTGCAG-
66 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTCAA-GGTTG-AGA
* *
17667139 CAGTAGGATTGACAACACGCATGGGGGACCGGGCTGAACCCCAGCTAGCGCATTCTGCCTCCCCT
129 CAGTAGGA-TCACAACACGCAAGGGGGACCGGGCTGAACCCCAGCTAGCGCATTCTGCCT-CCCT
* * * *
17667204 ATCGA-CTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATAT
192 AGCGAGCTGAATGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATAT
* * * *
17667268 CTAAGCCCCAACCGAACTGAGGGTTGTGGCAGCAGGACC-ACAGCACGCAGA-AGGGGA-CTGGG
257 CTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGAACACAGAGA-GGGATC-GAG
* * **
17667330 CCGATCC-CTAGCTTACGCATTATGCCTCTCCAGCCAGCTCAGCGCCCAAACGTTTGTTTTGTGG
320 CCGATCCTC-AGCTTACGCATTATGCCTCTCCAGCCAGCTCAGCGCCCAAACATTCGTTTCATGG
* * *
17667394 GTTGACTTAGGCATACGGAGTTCATTCCCAATCTTAGA-TCGAATCGGACCGAGGGTTGCGGTAG
384 GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTCG-ACCGGACCGAGGGTTGCGATAG
* * * * * * * * *
17667458 TAGGTTCGACAGCACGTAGGGTGGGATCGGGTCG-TTCCTCAGCTTATGCATTCT
448 CAGGATAGACAGCACGCAAGG-GGGACCGGATCGATCCCT-AGCTTACGCATTCT
* * * * * *
17667512 GCCTCTCTGACCAACTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCA
1 ACCTCTCCGACCAACTGAGTGCCCGTAAGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* *
17667577 TTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGA
66 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
17667627 CCGAGGCTTA
Statistics
Matches: 505, Mismatches: 100, Indels: 21
0.81 0.16 0.03
Matches are distributed among these distances:
499 11 0.02
500 241 0.48
501 248 0.49
502 5 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (500 bp):
ACCTCTCCGACCAACTGAGTGCCCGTAAGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTCAAGGTTGAGACA
GTAGGATCACAACACGCAAGGGGGACCGGGCTGAACCCCAGCTAGCGCATTCTGCCTCCCTAGCG
AGCTGAATGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATATCTAA
GCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGAACACAGAGAGGGATCGAGCCGATC
CTCAGCTTACGCATTATGCCTCTCCAGCCAGCTCAGCGCCCAAACATTCGTTTCATGGGTTGACT
TAGGCATACGGAGTTCATTCCCAATCTAAGATTCGACCGGACCGAGGGTTGCGATAGCAGGATAG
ACAGCACGCAAGGGGGACCGGATCGATCCCTAGCTTACGCATTCT
Found at i:17667599 original size:26 final size:26
Alignment explanation
Indices: 17667563--17667615 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17667553 GTTGGCTTAG
17667563 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
17667589 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17667615 G
1 G
17667616 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17667955 original size:26 final size:26
Alignment explanation
Indices: 17667918--17667970 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17667908 GTTGGCTTAG
*
17667918 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
17667944 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
17667970 G
1 G
17667971 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:17668069 original size:184 final size:184
Alignment explanation
Indices: 17667760--17668498 Score: 647
Period size: 184 Copynumber: 4.0 Consensus size: 184
17667750 GTTGACGTAG
* * *
17667760 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAGGGTTACGGCT-GCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTAC-GATAGCAGGATCGA
* * * ** * * *
17667823 TAGCACGCAGGGGGGA-CTGGGCCGGTCCCCAGCTTACGCATTCTGCCTTTTCGATCGGCTGAGC
64 TAGCACGCAAGGGGGATC-GGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGC
* *
17667887 GCCCGCACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
17667944 GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGATA
* * * *
17668009 GCACACAAGGGGGATCGAGCCGGTCCCCGGCTTGTGCATTCTGCCTCTCCTACCGGCTGAGCGCC
66 GCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
17668074 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * ** * * ** * *
17668128 GC---CCCAG-CCAGACTGAGGGT-TGTGA-CAG-CAGGACC---GG---C---AGCGGGATCGA
1 GCATACGGAGTTCATTC-CA-TGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGA
* ** * * *
17668177 CAGCACGCAGAGAAGGATCGGGCTGATCCCCTGGCTTGTGTATTATGCCTCTCCGATCGGCCTCT
64 TAGCACGCA-AGGGGGATCGGGCCGATCCCC-GGCTTGTGCATTCTGCCTCTCCGA---------
* * * *
17668242 CTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGTATACGGAGTTCATCCCCA
118 C----CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCA
17668307 -GTCTAA
178 TGTCTAA
* * **
17668313 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCGGATCGAGGGTTACGATAGCAGGATCGGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGAT
* * * * * *
17668377 AGCATGCAGGGGGGATTGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGC
65 AGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
17668442 CCGCACGCCCATTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17668497 GC
1 GC
17668499 CCAAGCCAGA
Statistics
Matches: 439, Mismatches: 77, Indels: 78
0.74 0.13 0.13
Matches are distributed among these distances:
170 17 0.04
171 16 0.04
172 21 0.05
173 1 0.00
176 2 0.00
179 6 0.01
180 6 0.01
181 8 0.02
182 2 0.00
183 8 0.02
184 215 0.49
185 60 0.14
186 3 0.01
187 2 0.00
188 7 0.02
189 5 0.01
190 5 0.01
193 2 0.00
196 1 0.00
197 21 0.05
198 15 0.03
199 16 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGATA
GCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17668320 original size:26 final size:26
Alignment explanation
Indices: 17668284--17668339 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
17668274 TGGGTTGACT
*
17668284 TAAGTATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
17668310 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
17668336 TAAG
1 TAAG
17668340 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:17668849 original size:26 final size:26
Alignment explanation
Indices: 17668813--17668865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17668803 GTTGACTTAG
17668813 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
17668839 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
17668865 G
1 G
17668866 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:17669880 original size:351 final size:340
Alignment explanation
Indices: 17669085--17669904 Score: 817
Period size: 356 Copynumber: 2.3 Consensus size: 340
17669075 AGTGGGACCG
* * * * * *
17669085 CAGCACGCAGAGGGGGACTGGGCGATCCCTAGCTTGCGCATTATGCCACTCCGGCCAGCTCAGCG
1 CAGCACGCAG-GGGGGAC-GGGCGATCCCCAGCTTGCGCATTCTACCTCTCC-GCCGGCTGAGCG
** * * * *
17669150 CCCAAACGTTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTTAGATCAGATC
63 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
** * * * * * *
17669215 GGATCGAGGGTTGCGATAGTAGGATCGACAGCACATAAGGTGGGACTGGGTCAGTCCTCGGCTTA
128 AAACCAAGGGTTGCGACAGTAGGATCGACAGCACA-AAGGGGGGACCGGGTCAGTCCCCGGCTTA
* * * * * *
17669280 TGCATTTTGCCTCTCTCGATCGGCTGAGCGCCCGTACGCTCGTTTTATAGGTTGGCTTAGGCCTA
192 CGCATTTTACCTCTCTCGATCGGCTGAACGCCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATA
* * *
17669345 CAGAGTTCATACCATGTCTAAGCATACGGAGTTCATTCCTAGCCTAAGATCGGACCGGACTGATG
257 CAGAGTCCATACCATGTCTAAGCATACGGAGTTCATTCCTAGCCTAAGATCGGACCGGACGGAGG
17669410 CTTGTGGTAGCAGGATCAA
322 CTTGTGGTAGCAGGATCAA
** *
17669429 CAGTAGGATCGACAGCATATAGGGGCAAACCGGGCCGAT-CCCGGCTTGCGCATTCTACCTCTCC
1 C---A-G--C-AC-GC----AGGGG-GGA-CGGG-CGATCCCCAGCTTGCGCATTCTACCTCTCC
* *
17669493 GACCGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAG
51 G-CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAA-
*
17669558 TCTAAGATCAGACCAAACCAAGGGTTTGCGACAGTAGGATCGACAGCAC-CAGGGGGGACCGAGG
114 TCTAAGATCAGACCAAACCAAGGG-TTGCGACAGTAGGATCGACAGCACAAAGGGGGGACCG-GG
* * * *
17669622 -CAGATCCCCCGGCTTGCGCATTTTACCT-TTTCGGTC-GCTGAACGCCCGCACGCCTCGTTTCG
177 TCAG-T-CCCCGGCTTACGCATTTTACCTCTCTCGATCGGCTGAACGCCCGCACG-CTCGTTTCA
* * * * *
17669684 TGCGGTTGGCTTAAGGCATACGGAGTCCATTCCCATGTCTAAGCATATGGACGTTCATTCC-AGT
239 T-AGGTTGGCTT-AGGCATACAGAGTCCA-TACCATGTCTAAGCATACGGA-GTTCATTCCTAGC
* *
17669748 CTAAGATCGGAACCGGACCGGAGGGTTGTGGTAGCAGGATCGA
300 CTAAGATCGG-ACCGGA-CGGAGGCTTGTGGTAGCAGGATCAA
*
17669791 CAGCACGCAGGGGGGATCGGGTCGGTCCCCAGCCTTGCGCATTCTACCTCTCCTGCCGGCTGAGC
1 CAGCACGCAGGGGGGA-CGGG-CGATCCCCAG-CTTGCGCATTCTACCTCTCC-GCCGGCTGAGC
* *
17669856 GCCCGCACGCTCGTTTCGTGGGTTG-GTTGAGGCATACGGAGTTCATTCC
62 GCCCGCACGCTCGTTTCATGGGTTGACTT-AGGCATACGGAGTTCATTCC
17669905 ATGTNNNNNN
Statistics
Matches: 388, Mismatches: 56, Indels: 57
0.77 0.11 0.11
Matches are distributed among these distances:
344 1 0.00
347 1 0.00
348 1 0.00
349 8 0.02
350 12 0.03
351 74 0.19
352 3 0.01
354 2 0.01
355 6 0.02
356 107 0.28
357 40 0.10
358 51 0.13
359 14 0.04
360 31 0.08
361 15 0.04
362 22 0.06
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (340 bp):
CAGCACGCAGGGGGGACGGGCGATCCCCAGCTTGCGCATTCTACCTCTCCGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAA
CCAAGGGTTGCGACAGTAGGATCGACAGCACAAAGGGGGGACCGGGTCAGTCCCCGGCTTACGCA
TTTTACCTCTCTCGATCGGCTGAACGCCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACAGA
GTCCATACCATGTCTAAGCATACGGAGTTCATTCCTAGCCTAAGATCGGACCGGACGGAGGCTTG
TGGTAGCAGGATCAA
Found at i:17671345 original size:159 final size:160
Alignment explanation
Indices: 17671042--17671546 Score: 510
Period size: 159 Copynumber: 3.2 Consensus size: 160
17671032 CCTAGTCTAA
* * *
17671042 GCATACGGAGTTCATTCCCA-GTCAAAG-ACC-GAACCGGACTGAGGGTTAGGGTAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAG-ACCAGACTGAGGGTTGGGGTAGCAGGATCG
** ** * * * *
17671104 GCAGCACGCAG-GGGGGACCGGGATGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAG
64 GCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAG
* * *
17671168 TGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
129 AGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **
17671200 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGTTTGAGGGTTGGGGTAGC-GGCA-CAG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGGGGTAGCAGG-ATC-G
* ** * *
17671262 GCAGCACGTAGAGGGGGATTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCTGGCTGGCTCAG
64 GCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAG
* * * *
17671327 CGCCCGTACGCTCGTTTCGTGGGATGACTTAG
129 AGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
17671359 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCTGATCGGACTGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGTTGGGGTAGCAGGATCGG
* * * *
17671422 CAGCACGCA-AGGGGGAACCGGGCCAATTCCCGGCTTGTGCATTCTGCTTCTCT-GATCGGCTGA
65 CAGCACGCAGAGGGGG-ACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCT-GGCTGA
* *
17671485 GAGCTCGCACGCTCGTTTCATGGGTTGGCTTAG
128 GAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
17671518 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
17671547 TACGGAGTTC
Statistics
Matches: 280, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.02
158 64 0.23
159 202 0.72
160 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGGGGTAGCAGGATCGGC
AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAGAG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17671548 original size:26 final size:26
Alignment explanation
Indices: 17671518--17671570 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17671508 GTTGGCTTAG
17671518 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17671544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17671570 G
1 G
17671571 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17671746 original size:197 final size:197
Alignment explanation
Indices: 17671411--17671768 Score: 529
Period size: 197 Copynumber: 1.8 Consensus size: 197
17671401 GGGTTGCGGT
* ** * * *
17671411 AGCAGGATCGACAGCACGCAAGGGGGAACCGGGCCAATTCCCGGCTTGTGCATTCTGCTTCTCTG
1 AGCAGGATCGACAGCACGCAAGGGGGAACCGGGCCAATCCCCGGCTTGCACATACTGCCTCTCCG
* * *
17671476 ATCGGCTGAGAGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 ATCGACTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTC
17671541 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACTA
131 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACTA
17671606 GC
196 GC
* * * *
17671608 AGCAGGATCGACAGCATGCAGGGGGGGACCGGGCCGATCCCCGGCTTGCACATACTGCCTCTCCG
1 AGCAGGATCGACAGCACGCAAGGGGGAACCGGGCCAATCCCCGGCTTGCACATACTGCCTCTCCG
* ** * *
17671673 ATCTACTGAGCA-CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTTATTCCATCT
66 ATCGACTGAG-AGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCT
*
17671737 CTAAGCATACGGAGTTCATTCCTAGTCTAAGA
130 CTAAGCATACGGAGTTCATTCCCAGTCTAAGA
17671769 ATTTGAGCCA
Statistics
Matches: 141, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
197 140 0.99
198 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (197 bp):
AGCAGGATCGACAGCACGCAAGGGGGAACCGGGCCAATCCCCGGCTTGCACATACTGCCTCTCCG
ATCGACTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACTA
GC
Found at i:17672484 original size:25 final size:26
Alignment explanation
Indices: 17672450--17672499 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
17672440 GTTGACTTAG
17672450 GCATACGGAGTTCA-TCCCAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
17672475 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17672500 AGATCAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:17672984 original size:26 final size:26
Alignment explanation
Indices: 17672954--17673006 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17672944 GTAGGCTTAG
17672954 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17672980 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17673006 G
1 G
17673007 ATTAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17673294 original size:13 final size:13
Alignment explanation
Indices: 17673276--17673305 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
17673266 ATTACGCCTT
*
17673276 TCCGACTGGCATC
1 TCCGACCGGCATC
17673289 TCCGACCGGCATC
1 TCCGACCGGCATC
17673302 TCCG
1 TCCG
17673306 GTTGGCTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.43, G:0.23, T:0.20
Consensus pattern (13 bp):
TCCGACCGGCATC
Found at i:17673816 original size:183 final size:184
Alignment explanation
Indices: 17673507--17674292 Score: 735
Period size: 183 Copynumber: 4.2 Consensus size: 184
17673497 GTTGACTTAG
* * * * * ** *
17673507 GCATACAAAGTTCATTCCCAATCTAAGAT-AGGACCGGATCAAGTGTTGCGGCAGTTGGATCAAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
** * * **
17673571 AACATGCAGGAGGGGACCGGGCCAGTCCCTAGCTTGCGCATTCTGA-C-CTCCGATCGGCTGAGC
65 AACACACAGG-GGGGACCGGGCCGGTCCCTGGCTTGCGCATTCT-ACCTCTCCGGCCGGCTGAGC
* *
17673634 ACCCGCACGCTCGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCATGTCTAA
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
17673691 GCATACAAAGTTCATTCCCAGTCTAAG-TCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* *
17673755 GCACACAGGGGGGACCAGGCCGGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCC
66 ACACACAGGGGGGACCGGGCCGGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCC
*
17673820 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
17673874 GCATAC-GAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T----T-GC--G----GCA
* ** * * * * * *
17673938 GCAGGATCGACAGCACGTAGGGGGGACTGGGTCGATCCCCT-ACTTGTGTATTCTACCTCTCCGA
54 GCAGGATCGACAACACACAGGGGGGACCGGGCCGGT-CCCTGGCTTGCGCATTCTACCTCTCCG-
* * *
17674002 CCGACCTCTCCGGTAGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
117 --G------CC----GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
17674067 TCATCCCCA-GTCTAA
170 TCAT-TCCATGTCTAA
* * * * * **
17674082 GCATACGGAGTTCATTCCCAGCCTATGATC-GAACCGGACCGAAGGTTGTGGCAGCAGGATCGGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
17674146 AACACGCAGGGGGGACTGAGCCGGTCCCCGGCTT-CGCATTCTACCTTTTCGGCTGGCTGAGTGT
65 AACACACAGGGGGGACCGGGCCGGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGC
*
17674210 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17674265 GCATACAGAGTTCATTCCCAGTCTAAGA
1 GCATACAGAGTTCATTCCCAGTCTAAGA
17674293 GTTTGAGCCA
Statistics
Matches: 499, Mismatches: 68, Indels: 71
0.78 0.11 0.11
Matches are distributed among these distances:
181 1 0.00
182 52 0.10
183 203 0.41
184 28 0.06
187 1 0.00
188 1 0.00
189 2 0.00
191 1 0.00
193 1 0.00
195 50 0.10
196 20 0.04
197 35 0.07
198 1 0.00
201 1 0.00
203 1 0.00
204 3 0.01
208 64 0.13
209 34 0.07
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
ACACACAGGGGGGACCGGGCCGGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17674275 original size:26 final size:26
Alignment explanation
Indices: 17674239--17674291 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17674229 GTTGGCTTAG
*
17674239 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17674265 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17674291 G
1 G
17674292 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17674717 original size:165 final size:165
Alignment explanation
Indices: 17674472--17674803 Score: 423
Period size: 165 Copynumber: 2.0 Consensus size: 165
17674462 TGGGATGGCT
** *
17674472 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGATTGAGGGTTGTGGTAGCGGGACCG
1 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGCGGGACCG
* * *
17674537 ATAGCACATAGAGGGGGATCAGGTC-AATCCCCGGCTCGCGCATTATGCCTCTCCGACCGGCTCA
66 ACAGCACACAGAGGGGGA-CAGGGCTAATCCCCGGCTCGCGCATTATGCCTCTCCGACCGGCTCA
* * *
17674601 ACGCCTGCACGCTCTTTTCGTGGGTTGACTTAGGCA
130 ACGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCA
* * * *
17674637 TAGGCATATGGAGTTCATTCCATGTCTACGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCG
1 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGCGGGACCG
* ** * * * * * * *
17674702 GCAGCATGCAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAG
66 ACAGCACACAGAGGGGGACAGGGCTAATCCCCGGCTCGCGCATTATGCCTCTCCGACCGGCTCAA
* *
17674767 TGCCCGCACGCTCGTTCCGTGGGTTGGCTTAGGCA
131 CGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCA
17674802 TA
1 TA
17674804 CGGAGTTCAT
Statistics
Matches: 141, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
164 4 0.03
165 137 0.97
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.23
Consensus pattern (165 bp):
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGCGGGACCG
ACAGCACACAGAGGGGGACAGGGCTAATCCCCGGCTCGCGCATTATGCCTCTCCGACCGGCTCAA
CGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCA
Found at i:17675558 original size:26 final size:26
Alignment explanation
Indices: 17675521--17675573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17675511 GTTGACTTAG
*
17675521 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
17675547 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17675573 G
1 G
17675574 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17676451 original size:26 final size:26
Alignment explanation
Indices: 17676414--17676466 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17676404 GTTGACTTAG
*
17676414 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17676440 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17676466 G
1 G
17676467 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17676747 original size:158 final size:158
Alignment explanation
Indices: 17676440--17676782 Score: 385
Period size: 158 Copynumber: 2.2 Consensus size: 158
17676430 CCCAGTCTAA
* * *
17676440 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAGGATTGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGCAACAGGATCGATA
* ** * *
17676505 GCACACAGGGGGGACCAGGCTGATCCCTGACTTGTGTATTATGCCTCTCCGACCGACTCAATGTC
66 GCACACAGGGGGGACCAGGCTGATCCCAGACTTACGCATTATGCCTCTCCGACCGACTCAATGCC
* *
17676570 TGAACGCTCGTTTCATGGGTTGACTTAG
131 CGAACGCTCATTTCATGGGTTGACTTAG
*
17676598 GCATACGAAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCAAGGGTTGCGGCAACAGGATCGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACT-AGACCAAGGGTTGCGGCAACAGGATCGAT
* * * * *
17676662 AGTA-AGCAGGGGGGACC-GGGTCGGTCCCCAG-CTTACGCATTCTGCCTCTCCGACCGGCT-AA
65 AGCACA-CAGGGGGGACCAGGCT-GAT-CCCAGACTTACGCATTATGCCTCTCCGACCGACTCAA
* * * *
17676723 -GCACCCGCATGCTCATTTCGTGGGTTGGCTTAG
127 TG--CCCGAACGCTCATTTCATGGGTTGACTTAG
*
17676756 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
17676783 TATACGAAGT
Statistics
Matches: 157, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
156 1 0.01
157 10 0.06
158 142 0.90
159 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGCAACAGGATCGATA
GCACACAGGGGGGACCAGGCTGATCCCAGACTTACGCATTATGCCTCTCCGACCGACTCAATGCC
CGAACGCTCATTTCATGGGTTGACTTAG
Found at i:17676794 original size:26 final size:26
Alignment explanation
Indices: 17676758--17676808 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17676748 TGGCTTAGGC
*
17676758 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGAAGTTCATTCCCA-GTCTAAGT
17676784 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
17676809 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:17677002 original size:26 final size:26
Alignment explanation
Indices: 17676966--17677018 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17676956 GTTGACTTAG
*
17676966 GCATATGGAGTT-AATCCTCAGTCTAA
1 GCATACGGAGTTCAATCC-CAGTCTAA
*
17676992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
17677018 G
1 G
17677019 ATCGAACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:17677339 original size:26 final size:26
Alignment explanation
Indices: 17677309--17677361 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17677299 GTTGGCTTAG
17677309 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17677335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17677361 G
1 G
17677362 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17678266 original size:26 final size:26
Alignment explanation
Indices: 17678230--17678282 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17678220 GTTGGCTTAG
17678230 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17678256 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17678282 G
1 G
17678283 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17678908 original size:26 final size:26
Alignment explanation
Indices: 17678872--17678924 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17678862 GTTGGCTTAG
**
17678872 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17678898 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17678924 G
1 G
17678925 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.