Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 154 of 402
Found at i:17679110 original size:26 final size:26
Alignment explanation
Indices: 17679081--17679133 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17679071 GTTGACTTAG
* *
17679081 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
17679107 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17679133 G
1 G
17679134 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17680182 original size:354 final size:354
Alignment explanation
Indices: 17679382--17680140 Score: 1284
Period size: 354 Copynumber: 2.1 Consensus size: 354
17679372 CGGTCGGTTC
* *
17679382 AGCGCTCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCA
1 AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCA
* * * * *
17679447 GACCAGACCGAAGGTTGCGACAGCAGGATCGACATAACGTAGGGGGATCGGGCCGGTCCTCGGCT
66 GACCAGACCGAGGGTTGTGACAGCAGGATCGACAGAACGCAGGGGGATCGGGCCGGTCCCCGGCT
17679512 TACGCATTCTACCTTTTCGGCCAGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
131 TACGCATTCTACCTTTTCGGCCAGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
17679577 ACGGAGTTCATTCCATGTCTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG
196 ACGGAGTTCATTCCATGTCTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG
*
17679642 GGTTACGACAGTAGGACCAGCAGCAGGATCTACAGCACACAGGAGGAGACCAGGCCGATCCCCGG
261 GGTTACGACAGCAGGACCAGCAGCAGGATCTACAGCACACAGGAGGAGACCAGGCCGATCCCCGG
* *
17679707 CTTGCGTATTCTGCCTCTCCGACCGACTG
326 CTTACGTATTCTACCTCTCCGACCGACTG
*
17679736 AGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCA
1 AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCA
*
17679801 GACCAGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGATCGGGCCGGTCCCCGGCT
66 GACCAGACCGAGGGTTGTGACAGCAGGATCGACAGAACGCAGGGGGATCGGGCCGGTCCCCGGCT
* * *
17679866 TATGCATTCTACCTTTTCGGCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTATGCAT
131 TACGCATTCTACCTTTTCGGCCAGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* *
17679931 ACGGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
196 ACGGAGTTCATTCCATGTCTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG
* * **
17679996 GGTTACGACAGCAGGACCAGCAGCAGGATCTGCAGCACACAGGGGGAGACTGGGCCGATCCCCGG
261 GGTTACGACAGCAGGACCAGCAGCAGGATCTACAGCACACAGGAGGAGACCAGGCCGATCCCCGG
* *
17680061 CTTACGTATTCTACCTCTCCGACTGGCTG
326 CTTACGTATTCTACCTCTCCGACCGACTG
** *
17680090 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
1 AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTC
17680141 AATGTCTAAG
Statistics
Matches: 378, Mismatches: 27, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
354 378 1.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (354 bp):
AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCA
GACCAGACCGAGGGTTGTGACAGCAGGATCGACAGAACGCAGGGGGATCGGGCCGGTCCCCGGCT
TACGCATTCTACCTTTTCGGCCAGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG
GGTTACGACAGCAGGACCAGCAGCAGGATCTACAGCACACAGGAGGAGACCAGGCCGATCCCCGG
CTTACGTATTCTACCTCTCCGACCGACTG
Found at i:17680345 original size:26 final size:27
Alignment explanation
Indices: 17680308--17680358 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
17680298 GTTGACTTAG
17680308 GCATACAGAG-TTCA-TCCCTAGTCTAA
1 GCATACAGAGTTTCATTCCC-AGTCTAA
17680334 GCATAC-GTAGTTTCATTCCCAGTCT
1 GCATACAG-AGTTTCATTCCCAGTCT
17680359 GAGATTGGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
25 1 0.05
26 8 0.36
27 9 0.41
28 4 0.18
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (27 bp):
GCATACAGAGTTTCATTCCCAGTCTAA
Found at i:17681207 original size:26 final size:26
Alignment explanation
Indices: 17681178--17681230 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17681168 GTTGGCTTAG
*
17681178 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17681204 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17681230 G
1 G
17681231 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17682202 original size:159 final size:158
Alignment explanation
Indices: 17681987--17682416 Score: 478
Period size: 159 Copynumber: 2.7 Consensus size: 158
17681977 AGCACATAGT
* * * * *
17681987 GGGGATCGGGTCGATCCCTGACTTATGCATTCTGCCTCT-TCGGCCGGTTGAGCGCCCGCTCGCC
1 GGGGATCGGGTCGATCCCTGACTTGTGCATTATGCCTCTCT-GG-CGGCTGAGCGCCCGCACGCT
* * *
17682051 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACTGAGG
64 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGG
* *
17682115 GTTGTGGTAACGGGA-CTGACAGCACGCAGAG
129 GTTGCGGCAACGGGATC-GACAGCACGCA-AG
* * * *
17682146 GGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCGCCCGAACGCTC
1 GGGGATCGGGTCGATCCCTGACTTGTGCATTATGCCTCTCTGG-CGGCTGAGCGCCCGCACGCTC
* * * * * * *
17682211 ATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAGG
65 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGG
* * * *
17682274 GTTGCGGCAGCTGGATCGATAGCACGTAAG
129 GTTGCGGCAACGGGATCGACAGCACGCAAG
* * *
17682304 GGGGACCGGGTCAAT-CCTCGACTTGTGCATTATGCCTCTCAGGCTGGCTGAGCGCCCGCACGCT
1 GGGGATCGGGTCGATCCCT-GACTTGTGCATTATGCCTCTCTGGC-GGCTGAGCGCCCGCACGCT
17682368 CGTTT-GATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 CGTTTCG-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17682417 TACGGAGTTC
Statistics
Matches: 225, Mismatches: 37, Indels: 18
0.80 0.13 0.06
Matches are distributed among these distances:
157 7 0.03
158 93 0.41
159 120 0.53
160 5 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GGGGATCGGGTCGATCCCTGACTTGTGCATTATGCCTCTCTGGCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGT
TGCGGCAACGGGATCGACAGCACGCAAG
Found at i:17682380 original size:158 final size:157
Alignment explanation
Indices: 17681913--17682414 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 157
17681903 CCAGTCCTAA
* * ** ** *
17681913 GCATACAAAGTTCATTCCCA-GTGTAAGATCAGATAGGACCGAGGGTTGCAACAGCAGGATCGGT
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * *
17681977 AGCACAT-AGTGGGGATCGGGTCGATCCCTGACTTATGCATTCTGCCTCTTCGGCCGGTTGAGCG
65 AGCACGTAAG-GGGGATCGGGTCGATCCCTGACTTGTGCATTATGCCTC-TCGGCTGGCTGAGCG
* *
17682041 CCCGCTCGCCCGTTTCG-TGGGTTGGCTTAG
128 CCCGCACGCTCGTTT-GATGGGTTGGCTTAG
* * ** * * * * * *
17682071 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACTGAGGGTTGTGGTAACGGGA-CTGA
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GA
* * * * *
17682134 CAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCTGG-TCGGCTCAG
64 TAGCACGTA-AGGGGGATCGGGTCGATCCCTGACTTGTGCATTATGCCTCTC-GGCT-GGCTGAG
* * * *
17682198 CGCCCGAACGCTCATTTCATGGGTTGACTTAG
126 CGCCCGCACGCTCGTTTGATGGGTTGGCTTAG
* *
17682230 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCTGGATCGAT
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
* *
17682294 AGCACGTAAGGGGGACCGGGTCAAT-CCTCGACTTGTGCATTATGCCTCTCAGGCTGGCTGAGCG
65 AGCACGTAAGGGGGATCGGGTCGATCCCT-GACTTGTGCATTATGCCTCTC-GGCTGGCTGAGCG
17682358 CCCGCACGCTCGTTTGATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTGATGGGTTGGCTTAG
*
17682388 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
17682415 CATACGGAGT
Statistics
Matches: 273, Mismatches: 57, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 10 0.04
158 137 0.50
159 120 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGTAAGGGGGATCGGGTCGATCCCTGACTTGTGCATTATGCCTCTCGGCTGGCTGAGCGCCC
GCACGCTCGTTTGATGGGTTGGCTTAG
Found at i:17682438 original size:26 final size:26
Alignment explanation
Indices: 17682388--17682440 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17682378 GTTGGCTTAG
*
17682388 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17682414 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17682440 G
1 G
17682441 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17682623 original size:26 final size:25
Alignment explanation
Indices: 17682593--17682671 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
17682583 GTTGACTTAG
*
17682593 GCATACAGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCC-CAGTCTAA
* *
17682619 GCATATGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
17682645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
17682671 G
1 G
17682672 ATCAGACCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 43 0.93
27 3 0.07
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:17683069 original size:11 final size:11
Alignment explanation
Indices: 17683053--17683095 Score: 77
Period size: 11 Copynumber: 3.9 Consensus size: 11
17683043 CCCGGGGGAC
*
17683053 CATCGTCAGAA
1 CATCGTCGGAA
17683064 CATCGTCGGAA
1 CATCGTCGGAA
17683075 CATCGTCGGAA
1 CATCGTCGGAA
17683086 CATCGTCGGA
1 CATCGTCGGA
17683096 GAGCCTAACC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAA
Found at i:17683705 original size:27 final size:26
Alignment explanation
Indices: 17683667--17683718 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
17683657 GTTGACTTAG
17683667 GCATACAAAGTTCATCCCCAGTCTAAA
1 GCATACAAAGTTCATCCCCA-TCTAAA
* *
17683694 GCATACAGAGTTCATTCCCATCTAA
1 GCATACAAAGTTCATCCCCATCTAA
17683719 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCATCTAAA
Found at i:17684375 original size:26 final size:26
Alignment explanation
Indices: 17684339--17684394 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17684329 TAGGTTGACT
17684339 TAAGCATACGGAGTTCACCCCCAGTC
1 TAAGCATACGGAGTTCACCCCCAGTC
**
17684365 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCACCCCCAGTC
17684391 TAAG
1 TAAG
17684395 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (26 bp):
TAAGCATACGGAGTTCACCCCCAGTC
Found at i:17685082 original size:26 final size:26
Alignment explanation
Indices: 17685052--17685104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17685042 GTTAACTTAG
*
17685052 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17685078 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17685104 G
1 G
17685105 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17685646 original size:369 final size:368
Alignment explanation
Indices: 17684967--17685653 Score: 878
Period size: 369 Copynumber: 1.9 Consensus size: 368
17684957 GGATCGAGCC
* * * * * **
17684967 GATCCCTGGCTTGCGCATTTTATCTCTCCGATCGGCCTCTCCGACCGGCTAAGCTCCCGCTTGCT
1 GATCCCTGCCTTGCGCATTATACCTCTCCGATCGGCCTCTCCGACCGACTAAGCACCCGCACGCT
* * * * *
17685032 CATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATACGGAGTTCATTCCC
66 CATTCCATGGGTTAACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATACGAAGTTCATTCCC
* * * * * ** * *
17685097 AGTCTAAGATCGGATCGAATTGAGGGTTATAGACACAAGATCGGTAGCACGCAGGGGGGACCGGG
131 AGTCCAAGATCAGACCGAACTGAGGGTTAGAGACACAAGATCGACAGCACACAGGGGGGACCGAG
** * * ** *
17685162 TTGATCCCCGGCTTGTGCATTCCACCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCATGGG
196 CCGATCCCCGGCTTGCGCATTCCACCTCTCCGACCAGCTGAGCACCCGCACGCCCATTTCATGGG
*
17685227 TTGGATTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCA
261 TTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCA
17685292 GGACCCACAGTAGGATTGGTAGCACGCAGAGGAGGGTCGGGCT
326 GGACCCACAGTAGGATTGGTAGCACGCAGAGGAGGGTCGGGCT
* * *
17685335 GATCCCTGCCTTGCGCATTATGCCTCTCCGGTCGGCCTCTCCGACTGAC-AGAGCACCCGCACGC
1 GATCCCTGCCTTGCGCATTATACCTCTCCGATCGGCCTCTCCGACCGACTA-AGCACCCGCACGC
* * *
17685399 TCGTTCCGTGGGTTGACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
65 TCATTCCATGGGTTAACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATACGAAGTTCATT-C
* * * * *
17685464 CCAGTCCAAGATCAGACC-AGACTGGGGGTT-GCGGCAGCAGGATCGACAGCACACAGGGGGGAT
129 CCAGTCCAAGATCAGACCGA-ACTGAGGGTTAGAGACA-CAAGATCGACAGCACACAGGGGGGAC
* ** *
17685527 CGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-ATCCAGCTGAGCACCCGCATGCCCATTTC
192 CGAGCCGATCCCCGGCTTGCGCATTCCACCTCTCCGA-CCAGCTGAGCACCCGCACGCCCATTTC
* * *
17685591 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGT
256 ATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
17685654 CACAGTTGGA
Statistics
Matches: 267, Mismatches: 47, Indels: 9
0.83 0.15 0.03
Matches are distributed among these distances:
367 1 0.00
368 112 0.42
369 154 0.58
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (368 bp):
GATCCCTGCCTTGCGCATTATACCTCTCCGATCGGCCTCTCCGACCGACTAAGCACCCGCACGCT
CATTCCATGGGTTAACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATACGAAGTTCATTCCC
AGTCCAAGATCAGACCGAACTGAGGGTTAGAGACACAAGATCGACAGCACACAGGGGGGACCGAG
CCGATCCCCGGCTTGCGCATTCCACCTCTCCGACCAGCTGAGCACCCGCACGCCCATTTCATGGG
TTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCA
GGACCCACAGTAGGATTGGTAGCACGCAGAGGAGGGTCGGGCT
Found at i:17685827 original size:158 final size:158
Alignment explanation
Indices: 17685446--17685847 Score: 380
Period size: 158 Copynumber: 2.5 Consensus size: 158
17685436 CCCAGTCTAA
* * * * *
17685446 GCATACGAAGTTCATTCCCCAGTCCAAGATCAGACCAGACTGGGGGTTGCGGCAGCAGGATCGAC
1 GCATACGAAGTTCATT-TCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGAC
* * * * * * *
17685511 AGCACACAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCATCCAGCTGAGCAC
65 AGCACACAGGGGGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCAGCCAGCTCAGCAC
* *
17685576 CCGCATGCCCATTTCATGGGTTGGCTTAG
130 CCGAACGCCCATTTCATGGGTTGGCTTAG
* * ** * * ** *
17685605 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTC-ACAGTTGGACCG
1 GCATACGAAGTTCATTTCCA-GTCTAAGATC-AGACCGGACTGAGGGTTG-CGACAGCAGGATCG
* * ** **
17685667 ACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTT-CACATTATGCCTCTCTGGCTGGCTCAG
63 ACAGCACACAG-GGGGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCAGCCAGCTCAG
* * * *
17685731 CCCCCGAACGCTCGTTTCCTGGGTTGGCTTAG
127 CACCCGAACGCCCATTTCATGGGTTGGCTTAG
* *
17685763 GCATACGAAGTTCATTTCCAATCTAAGATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGAAGTTCATTTCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
****
17685828 GCGTGTAGGGGGGACCGAGC
66 GCACACAGGGGGGACCGAGC
17685848 TAGTCCTCGG
Statistics
Matches: 188, Mismatches: 48, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
157 17 0.09
158 130 0.69
159 41 0.22
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGAAGTTCATTTCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
GCACACAGGGGGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCAGCCAGCTCAGCACC
CGAACGCCCATTTCATGGGTTGGCTTAG
Found at i:17686114 original size:184 final size:182
Alignment explanation
Indices: 17685884--17686219 Score: 467
Period size: 184 Copynumber: 1.8 Consensus size: 182
17685874 TCTGGTCAGC
17685884 TGAGTGTCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGTGTCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* ** *
17685949 TATGGAGTTCATTCTGAGTCTAAGATCAAACCAAACTGAGGGTTACGGTAGCAGGATCGGTAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTACGGTAGCAGGATCGGCAGCA
17686014 CGCAGTGGGGACCAGGCCGATCCCCGGTTTGTGCATTCTGCCTCTTCAGTCGGT
131 CGCA--GGGGACCAGGCCGATCCCCGGTTTGTGCATTCTGCCTCTTCAGTCGGT
* * * *
17686068 TGAGTG-CTCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCGCAGTCTGAGC
1 TGAGTGTC-CGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
*** *** * *
17686132 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGTCTGAGGGTTGCGGTAGCAGGATTGGCAGC
65 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTACGGTAGCAGGATCGGCAGC
* **
17686197 ATGCAGGGGACTGGGCCGATCCC
130 ACGCAGGGGACCAGGCCGATCCC
17686220 TAGCTTACGT
Statistics
Matches: 132, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
182 16 0.12
183 1 0.01
184 115 0.87
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (182 bp):
TGAGTGTCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTACGGTAGCAGGATCGGCAGCA
CGCAGGGGACCAGGCCGATCCCCGGTTTGTGCATTCTGCCTCTTCAGTCGGT
Found at i:17686133 original size:26 final size:26
Alignment explanation
Indices: 17686104--17686153 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17686094 GTTGGCTTAG
17686104 GCATACGGAGTTCA-TCCGCAGTCTGA
1 GCATACGGAGTTCATTCC-CAGTCTGA
17686130 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
17686154 AAGATTGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTGA
Found at i:17686883 original size:26 final size:26
Alignment explanation
Indices: 17686847--17686899 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17686837 GTTGGCTTAG
17686847 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
17686873 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
17686899 G
1 G
17686900 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:17687606 original size:26 final size:26
Alignment explanation
Indices: 17687570--17687621 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17687560 TTGACTTAGT
17687570 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
17687596 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
17687622 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:17688110 original size:158 final size:157
Alignment explanation
Indices: 17687647--17688115 Score: 456
Period size: 158 Copynumber: 2.9 Consensus size: 157
17687637 TGGTTGCAAC
** * ** * *
17687647 AGTAGGATCGCCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTATGCATTCCGCCTCTTCGA
1 AGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* ** * * * *
17687712 TCGGCTGAGTGCCCGCACGCCCGTTTCGATGGGTTGGCGTAGGCATAGGGAGTTCATTCCATGTC
66 CCGGC-GAGCACCCGCACACTCGTTTCG-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * * ** *
17687777 TAAGCCCCAGCCGAATCGAGGGTTGTGGT
129 TAAGCCCCAACCGGACCAAGGGTTACGAT
** ** * *
17687806 AGCGGGATCGATAGCACGCAGAGGGGGACCGGATCGATCCCCGGCTTGCGCACTATGCCTCTCCG
1 AGTAGGATCGATAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * * * * *
17687871 TCTGGCTCAGTGA-CCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAT-
65 ACCGGC-GAG-CACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
* ** **
17687934 TCCAAGATCGGACCGGACCAAGGGTTACGAT
127 TCTAAGCCCCAACCGGACCAAGGGTTACGAT
* * *
17687965 AGTAGGATCGATAGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGA
1 AGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
*
17688030 CCGACGAAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CCGGCG-AGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
*
17688095 AAGCCCCAACTGGACCGAAGG
130 AAGCCCCAACCGGACC-AAGG
17688116 TTATGACAGT
Statistics
Matches: 242, Mismatches: 61, Indels: 14
0.76 0.19 0.04
Matches are distributed among these distances:
157 5 0.02
158 96 0.40
159 84 0.35
160 57 0.24
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (157 bp):
AGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
CCGGCGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCCCCAACCGGACCAAGGGTTACGAT
Found at i:17688295 original size:26 final size:26
Alignment explanation
Indices: 17688256--17688307 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17688246 TTGACTTAGA
*
17688256 CATACGGAGCTCATCCCCGGTCTAAG
1 CATACGGAGCTCATCCCCAGTCTAAG
* *
17688282 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGCTCATCCCCAGTCTAAG
17688308 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (26 bp):
CATACGGAGCTCATCCCCAGTCTAAG
Found at i:17688647 original size:26 final size:26
Alignment explanation
Indices: 17688597--17688649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17688587 GTTGGCTTAG
*
17688597 GCATACAGAGTTCATTCCATTTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17688623 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
17688649 G
1 G
17688650 ATGTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17689355 original size:26 final size:26
Alignment explanation
Indices: 17689319--17689371 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17689309 GTTGACTTAG
17689319 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
17689345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17689371 G
1 G
17689372 ATGGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17690754 original size:26 final size:26
Alignment explanation
Indices: 17690725--17690777 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17690715 GTTGGCTTAG
*
17690725 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17690751 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17690777 G
1 G
17690778 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17691118 original size:26 final size:26
Alignment explanation
Indices: 17691088--17691140 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17691078 GTTGACTTAG
17691088 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17691114 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17691140 G
1 G
17691141 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17691433 original size:26 final size:26
Alignment explanation
Indices: 17691403--17691455 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17691393 GTTGACTTAG
*
17691403 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
17691429 GCATACAGAGTTTATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17691455 G
1 G
17691456 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17691638 original size:26 final size:26
Alignment explanation
Indices: 17691587--17691638 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17691577 GTTGGCTTAG
* *
17691587 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17691613 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17691639 CATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17691759 original size:184 final size:184
Alignment explanation
Indices: 17691383--17691788 Score: 456
Period size: 184 Copynumber: 2.2 Consensus size: 184
17691373 CCCAAACGCT
* * * *
17691383 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTTATTTCC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
* * * * * *
17691448 AGTCTAAGATCAGATCGGACCGAGGGTTGCGACGCAGGATTGACGGCACGCAGGGGGGGACCGGG
66 AGCCTAACATCAGACCGGACCAAGGGTTGCGACGCAGGATCGACAGCACGCAGGGGGGGACCGGG
** ** * *
17691513 CCTATACCCAACTTGTGCATTCTGCCTCTTCGATTGGCTGAACGCCCGTACACT
131 CAGATACCCAACTTGTGCATTCTGCCTCTTCGACCGGCTGAACGCCCGCACACC
* * *
17691567 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
* ** * * *
17691632 AGCCTAACATCAGACCGGATCAAGGGTTGCGACAGCAGGATCGGTAGCACGTA-TGGGGGATCGG
66 AGCCTAACATCAGACCGGACCAAGGGTTGCGAC-GCAGGATCGACAGCACGCAGGGGGGGACCGG
* * ** * * *
17691696 GTAGATCCCCGCCTTGTGCATTCTGCCTCTTCGGCCGGCT-AAGCGCCCGCCCGCC
130 GCAGATACCCAACTTGTGCATTCTGCCTCTTCGACCGGCTGAA-CGCCCGCACACC
* * * *
17691751 CGTTTCATGGGTTAGCTTAGGTAAAGGGAGTTCATTCC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
17691789 ATGTATAAGA
Statistics
Matches: 183, Mismatches: 37, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
183 2 0.01
184 167 0.91
185 14 0.08
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
AGCCTAACATCAGACCGGACCAAGGGTTGCGACGCAGGATCGACAGCACGCAGGGGGGGACCGGG
CAGATACCCAACTTGTGCATTCTGCCTCTTCGACCGGCTGAACGCCCGCACACC
Found at i:17691975 original size:159 final size:157
Alignment explanation
Indices: 17691613--17692105 Score: 481
Period size: 158 Copynumber: 3.1 Consensus size: 157
17691603 CCTAGTCTAA
* * * * * *
17691613 GCATACGGAGTTCATTCCCAGCCTAACATCAGACCGGATCAAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCAGGATCGGAA
* ** * * *
17691678 GCACGTATGGGGGATCGGGTAGATCCCCGCCTTGTGCATTCTGCCTCTTCGGCCGGCTAAGCGCC
65 GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCC
** * *
17691743 CGCCCGCCCGTTTCATGGGTT-AGCTTAG
130 CGAACGCTCGTTTCGTGGGTTGA-CTTAG
* * * * * * * * * *
17691771 GTAAAGGGAGTTCATT-CCATGTATAAGACCCAACCAGACTGAGGGTTGTGGTAG-AGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCAACCGGACCGAGGGTTGCGGCAGCA-GGATCGG
* * * * *
17691834 CAGCACGTAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGC
63 AAGCACGTAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGC
* *
17691899 ACCCGAACGCTCGTTTTGTGGGTTGACTTAG
127 GCCCGAACGCTCGTTTCGTGGGTTGACTTAG
* **
17691930 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTGCGGCAGCAGGATCAAAA
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAACCGGACCGAGGGTTGCGGCAGCAGGATCGGAA
** * * * **
17691995 GCACACAGGGGGGATCGGGCCGGTCCCCAGCTTGCGTATTCTGCCTCTCCGATCGGCTAAGCGCC
65 GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCC
* *
17692060 CGCGA-GCTCGTTTCGTGGGTTGGCTTAG
130 CG-AACGCTCGTTTCGTGGGTTGACTTAG
17692088 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
17692106 ATGTTTAGGT
Statistics
Matches: 265, Mismatches: 62, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 135 0.51
159 121 0.46
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACCGAGGGTTGCGGCAGCAGGATCGGAAG
CACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCCC
GAACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17692840 original size:26 final size:26
Alignment explanation
Indices: 17692811--17692863 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17692801 GTTGAGTTAG
17692811 GCATACGGAGTTT-ATACCCAATCTAA
1 GCATACGGA-TTTCATACCCAATCTAA
* * *
17692837 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGATTTCATACCCAATCTAA
17692863 G
1 G
17692864 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGATTTCATACCCAATCTAA
Found at i:17693228 original size:159 final size:159
Alignment explanation
Indices: 17692966--17693498 Score: 407
Period size: 159 Copynumber: 3.4 Consensus size: 159
17692956 GCTGAGCGGT
* * * * *
17692966 CGCACGCTCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAATCGG
1 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
** * * *** * * *
17693031 ATTGAGGGTTGTGGCAGTGGGACCGATAGCATGTAGAGGGGGATT-GGGTCGATCCCCGGCTTGC
66 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGG-TTCGGGCCAATCCCCGGCTTAC
* *
17693095 GTAGTAT-G-CCTCATCGGTCGGCTCAGCACC
130 GCAGTATGGCCCTC--CGGTCAGCTCAGCACC
* * **
17693125 CGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
1 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
* **
17693190 ACCGAGGGTTGTGGTAGCGGGATTGACAGCACACAGAGGGGGTTCGGGCCAATCCCCGGCTTACG
66 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGTTCGGGCCAATCCCCGGCTTACG
* *
17693255 CATTATGGCCCTCCGGTCAGCTCAGCATC
131 CAGTATGGCCCTCCGGTCAGCTCAGCACC
* * * ** **
17693284 CGCACGCTCATTTCATGGG-TGGACTTAGGCATACGGAGTTTATTCCCA-GTCTAAGATCGGACC
1 CGCACGCCCATTTCATGGGTTGG-CTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACC
* * * ** ** ** * * * * * *
17693347 AGACCAAGGGTTGCGATAGCAAGATAGACAGCACGCAGGGGGGGTCCGAGCCAGTCCCCGGCTTG
64 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGTTCGGGCCAATCCCCGGCTTA
* * * * * *
17693412 CGCATTCT-GCCTCTCC-GACCGACTGA-AAGCC
129 CGCAGTATGGCC-CTCCGGTCAG-CTCAGCA-CC
* * * * *
17693443 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17693499 ATATGGAGTT
Statistics
Matches: 306, Mismatches: 58, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
158 15 0.05
159 280 0.92
160 7 0.02
161 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGTTCGGGCCAATCCCCGGCTTACG
CAGTATGGCCCTCCGGTCAGCTCAGCACC
Found at i:17693507 original size:26 final size:26
Alignment explanation
Indices: 17693471--17693523 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17693461 GTTGGCTTAG
*
17693471 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
17693497 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17693523 G
1 G
17693524 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17694128 original size:26 final size:26
Alignment explanation
Indices: 17694098--17694150 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
17694088 GTTGGCTTAG
17694098 GCATACGA-AGTTCATT-CCATGTCTAA
1 GCATA-GAGAGTTCATTCCCA-GTCTAA
*
17694124 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
17694150 G
1 G
17694151 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGTCTAA
Found at i:17694355 original size:627 final size:627
Alignment explanation
Indices: 17693148--17694397 Score: 1650
Period size: 627 Copynumber: 2.0 Consensus size: 627
17693138 TGTGGGTTGG
* * * * *
17693148 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCGGGAT
1 CTTAGGCATAGGGAGTTCATTCAACGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGAC
** *
17693213 TGACAGCACACAGAGGGGGTTCGGGCCAATCCCCGGCTTACGCATTATGGCCCTCCGGTCAGCTC
66 TGACAGCACACAGAGGGGGACCAGGCCAATCCCCGGCTTACGCATTATGGCCCTCCGGTCAGCTC
* * * * *
17693278 AGCATCCGCACGCTCATTTCATGGGTGGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCG
131 AACACCCGAACGCTCATTTCATGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCG
* * * * *
17693343 GACCAGACCAAGGGTTGCGATAGCAAGATAGACAGCACGCAGGGGGGGTCCGAGCCAGTCCCCGG
196 GACCAGACAAAGGGTTACGATAGCAAGATAGACAGCACACAGGGGGGGACCGAGCCAGTCCCCAG
* ** *
17693408 CTTGCGCATTCTGCCTCTCCGACCGACTGAAAGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGC
261 CTTGCGCATTCTACCTCTCCGACCGACTGAAAGCCCACACGCTCGTTTCATGGGTTGGCTTAGGC
* * * *
17693473 ATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTAATTCCCAGTCTAAGATCGGACCAGACTG
326 ATACGAAGTTCATTCCATGTCTAAGCATATAGAGTTAATTCCCAGTCTAAGATCAGACCAGACCG
* * ** *
17693538 AGGGTTACGGTAGCAGGACCAGCAGCAGGATCAACAGCACACAGGGGGGATTGAGTCGATCCCTG
391 AGGGTTACGGTAGCAGGACCAACAGCAAGATCAACAGCACACAGGGGGGACCGAGTCGATCCCCG
* * * * * *
17693603 GCTTGCACATTCTGCCTCTCCGGTTGGCTGAGTGCCCGCACGTTCGTTTCGTGGTTTGACCTAGG
456 GCTTGCACATTCTGCCTCTCCGGTAGACT-ACTGCCCGCACGCTCATTTCGTGGGTTGACCTAGG
*
17693668 CATACGAAGTTCATTGCATGTCTAAGACCCAGTCGGACCGAAGGTTATGGCAGCAGGACCGGTAG
520 CATACGAAGTTCATTGCATGTCTAAGACCCAGTCAGACCGAAGGTTATGGCAGCAGGACCGGTAG
*
17693733 CGGGATCGACAGCACATAGAAGGGGATCGGGCTGATCCCCAGT
585 CGGGATCGACAGCACACAGAAGGGGATCGGGCTGATCCCCAGT
* * *
17693776 CTTAGGCATAGGGAGTTCATTCAACGTTTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGAGAC
1 CTTAGGCATAGGGAGTTCATTCAACGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGAC
* ** * * *
17693841 TGGCAGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTAT-GCCTCTTCGGTCAGCT
66 TGACAGCACACAGAGGGGGACCAGGCCAATCCCCGGCTTACGCATTATGGCC-CTCCGGTCAGCT
* * * * * * *
17693905 CAACGCCCGAACGCTCATTTCGTTGTTTGACTTAGGCATACGGAGTTCATTCCTAGTCAAAGATT
130 CAACACCCGAACGCTCATTTCATGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATC
* * * * * *
17693970 GGATCAGACAAAGGGTTACGATAGCAGGATCGACAGCACACA-GTGGGGACTG-GTCCGGTCCCC
195 GGACCAGACAAAGGGTTACGATAGCAAGATAGACAGCACACAGGGGGGGACCGAG-CCAGTCCCC
*
17694033 AGCTTGCGCATTCTACCTCTCCGACCGACTGAATGCCCACACGCTCGTTTCATGGGTTGGCTTAG
259 AGCTTGCGCATTCTACCTCTCCGACCGACTGAAAGCCCACACGCTCGTTTCATGGGTTGGCTTAG
* *
17694098 GCATACGAAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
324 GCATACGAAGTTCATTCCATGTCTAAGCATATAGAGTTAATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
17694163 CGAGGGTTGCGGTAGTAGGACCAACAGCAAGATCGACCGCACGCAGTGGGGGACCG-GTTGATCC
389 CGAGGGTTACGGTAGCAGGACCAACAGCAAGATCAACAGCACACAG-GGGGGACCGAGTCGATCC
* * * * *
17694227 CCGGCTTGCGCATTCTGCCTGTCCGGTCAGACT-CTCGCCCGTACGCTCATTTCGTGGGTTGGCT
453 CCGGCTTGCACATTCTGCCTCTCCGGT-AGACTACT-GCCCGCACGCTCATTTCGTGGGTTGACC
* * * *
17694291 TAGGCATACGGAGTTCATT-CTATGTCTAAG-CCCTAGTCAGACCGAGGGTTGTGGCAGTAGGAC
516 TAGGCATACGAAGTTCATTGC-ATGTCTAAGACCC-AGTCAGACCGAAGGTTATGGCAGCAGGAC
* *
17694354 CGGTAGCGGGATTGACAGCACACAGAGGGGGATCGGGCTGATCC
579 CGGTAGCGGGATCGACAGCACACAGAAGGGGATCGGGCTGATCC
17694398 TCAGCTTGTG
Statistics
Matches: 534, Mismatches: 81, Indels: 15
0.85 0.13 0.02
Matches are distributed among these distances:
626 6 0.01
627 321 0.60
628 207 0.39
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (627 bp):
CTTAGGCATAGGGAGTTCATTCAACGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGAC
TGACAGCACACAGAGGGGGACCAGGCCAATCCCCGGCTTACGCATTATGGCCCTCCGGTCAGCTC
AACACCCGAACGCTCATTTCATGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCG
GACCAGACAAAGGGTTACGATAGCAAGATAGACAGCACACAGGGGGGGACCGAGCCAGTCCCCAG
CTTGCGCATTCTACCTCTCCGACCGACTGAAAGCCCACACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGAAGTTCATTCCATGTCTAAGCATATAGAGTTAATTCCCAGTCTAAGATCAGACCAGACCG
AGGGTTACGGTAGCAGGACCAACAGCAAGATCAACAGCACACAGGGGGGACCGAGTCGATCCCCG
GCTTGCACATTCTGCCTCTCCGGTAGACTACTGCCCGCACGCTCATTTCGTGGGTTGACCTAGGC
ATACGAAGTTCATTGCATGTCTAAGACCCAGTCAGACCGAAGGTTATGGCAGCAGGACCGGTAGC
GGGATCGACAGCACACAGAAGGGGATCGGGCTGATCCCCAGT
Found at i:17695707 original size:26 final size:26
Alignment explanation
Indices: 17695677--17695729 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17695667 GTTGGCTTAG
*
17695677 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17695703 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17695729 G
1 G
17695730 ATCAGACCGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17696252 original size:26 final size:26
Alignment explanation
Indices: 17696215--17696267 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17696205 GTTGGCCTAG
17696215 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17696241 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
17696267 G
1 G
17696268 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17696490 original size:11 final size:11
Alignment explanation
Indices: 17696474--17696517 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
17696464 CTCGAGGCAC
17696474 CATCGTCGGAG
1 CATCGTCGGAG
*
17696485 CATCGTCAGAG
1 CATCGTCGGAG
17696496 CATCGTCGGAG
1 CATCGTCGGAG
*
17696507 CATCGCCGGAG
1 CATCGTCGGAG
17696518 AGCCTAACCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.16
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:17697132 original size:27 final size:26
Alignment explanation
Indices: 17697094--17697145 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
17697084 TGACTTAGGA
17697094 ATACGGAGTTCATTCCTCAGTCTAAGC
1 ATACGGAGTTCATTCC-CAGTCTAAGC
*
17697121 ATACGGAGTTCATTCCGAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17697146 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:17697809 original size:725 final size:718
Alignment explanation
Indices: 17696496--17697871 Score: 2069
Period size: 725 Copynumber: 1.9 Consensus size: 718
17696486 ATCGTCAGAG
* * *
17696496 CATCGTCGGAGCATCGCCGGAGAGCCTAACCGCAGCATTAGGGCTTCCGATGATTGGGGGGCTGG
1 CATCGTCGGAGCATCACCGGAGAGCCTAACCGCAGCATTAGGGCTTCCGACGATTGGGGGGCGGG
17696561 GGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAATTGGCCCCCTATCCCTCA
66 GGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAATTGGCCCCCTATCCCTCA
17696626 TCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTAAGATTTTATAGGTTTGATGCCAGTAG
131 TCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTAAGATTTTATAGGTTTGATGCCAGTAG
* *
17696691 CCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATCTTCTCGACTTCGAGT
196 CCATTAAAGTATCTGAAATGGGGACACATTTTTCAAACGATCACAAAATCTTCTCCACTTCGAGT
** * * * * *
17696756 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAGGGATCACGTCTACCACATTTGGGGA
261 TTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATATAGAGATCACCTATACCAAATTTAGGGA
*
17696821 CAAAAATCTTTCTAAAAAATTTTAAAAAATCCCGAATCGTAAAATGTTTCAAAAATGATGAAAAA
326 CAAAAATCTTTCTAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATGATGAAAAA
* *
17696886 TAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGGAGGCTTAGGGGACCATTATATGAATTTA
391 TAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTATATGAATTTA
* * * * *
17696951 CACGCCATAAAAATGGCATTGGAATTACAGAAATATGAAGATGTGCTTGAGCCCACCTACCACCC
456 AAAGCCATAAAAATGGCATTGGAATGACAGAAATATGAAGATGTGCTTGAACCCACCTACCAACC
* * ** *
17697016 ATTCGATCCTTAGCTTGCGCATCCTGCCTCTTTGGTCGGCTGAGCGCACGCACGCTCATTTCGTG
521 ATTCGATCATCAGCTTGCGCATCCTGCCTCGCTGGTCGACTGAGCGCACGCACGCTCATTTCGTG
* * *
17697081 GGTTGACTTAGGAATACGGAGTTCATTCCTC-AGTCTAAGCATACGGAGTTCATTCCGAGTCTAA
586 GGTTGACTTAGGAATACAGAGTTCA-TCC-CAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
17697145 GATTTTGAGTCACGACACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGG
649 GATTTTGAGTCACGACACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGG
17697210 GGCAC
714 GGCAC
* * * * *
17697215 CATCGTCGGAGCATCACCTGAGAGCCTAACCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGGCC
1 CATCGTCGGAGCATCACCGGAGAGCCTAACC-GCAGCATTAGGGCTTCCGACGATT-GGGGGG-C
* *
17697280 GGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
63 GGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-ATTGGCCCCCTATCC
** * *
17697345 CTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGTGATTTTATAGGTTTGCTGCTA
127 CTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTAAGATTTTATAGGTTTGATGCCA
* * * *
17697410 GTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTCTCCACTTT
192 GTAGCCATTAAAGTATCTGAAATGGGGACACATTTTTCAAACGATCACAAAATCTTCTCCACTTC
* *
17697475 GATTTTTTAGCTGAATTTTTTTGTGCACACCAA-AAAAATATACAGAGATGACCTATACCAAATT
257 GAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATAT--AGAGATCACCTATACCAAATT
**
17697539 TAGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCTTGAA-CTGTAAAAAGTTTCAAAAATC
320 TAGGGACAAAAATCTTTCT-AAAAAATTTTAAAAAATCCCGAATC-GTAAAAAGTTTCAAAAAT-
* *
17697603 G-TGAAAAATAGAAAACGGTTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTCT
382 GATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTAT
* * *
17697667 ATGAATTTAAAAGCCATAAAAATGGTATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCAC
447 ATGAATTTAAAAGCCATAAAAATGGCATTGGAATGACAGAAATATGAAGATGTGCTTGAACCCAC
* * *
17697732 CTACCAACCGTTCGATCATCGGCTTGCTCATCCTGCCTCGCTGGTCGACTGAGCGC-CTGCACGC
512 CTACCAACCATTCGATCATCAGCTTGCGCATCCTGCCTCGCTGGTCGACTGAGCGCAC-GCACGC
** * *
17697796 TTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCATACGAAGTTCTTTCC
576 TCATTTCGTGGGTTGACTTAGGAATACAGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCC
*
17697861 CAGTCTCAGAT
641 CAGTCTAAGAT
17697872 CACACTGGAC
Statistics
Matches: 586, Mismatches: 60, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
719 29 0.05
720 19 0.03
721 6 0.01
722 55 0.09
723 166 0.28
724 71 0.12
725 239 0.41
726 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (718 bp):
CATCGTCGGAGCATCACCGGAGAGCCTAACCGCAGCATTAGGGCTTCCGACGATTGGGGGGCGGG
GGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTAAGATTTTATAGGTTTGATGCCAGTAG
CCATTAAAGTATCTGAAATGGGGACACATTTTTCAAACGATCACAAAATCTTCTCCACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATATAGAGATCACCTATACCAAATTTAGGGA
CAAAAATCTTTCTAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATGATGAAAAA
TAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTATATGAATTTA
AAAGCCATAAAAATGGCATTGGAATGACAGAAATATGAAGATGTGCTTGAACCCACCTACCAACC
ATTCGATCATCAGCTTGCGCATCCTGCCTCGCTGGTCGACTGAGCGCACGCACGCTCATTTCGTG
GGTTGACTTAGGAATACAGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TTTTGAGTCACGACACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGG
CAC
Found at i:17698352 original size:26 final size:26
Alignment explanation
Indices: 17698322--17698374 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17698312 GTTGGCTTAG
17698322 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17698348 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17698374 G
1 G
17698375 ATCAGCCTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17698725 original size:26 final size:26
Alignment explanation
Indices: 17698689--17698741 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17698679 GTTGACTTAG
17698689 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17698715 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17698741 G
1 G
17698742 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17699335 original size:11 final size:11
Alignment explanation
Indices: 17699321--17699345 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
17699311 ACCATCGCCA
17699321 GAGCATCACCG
1 GAGCATCACCG
17699332 GAGCATCACCG
1 GAGCATCACCG
17699343 GAG
1 GAG
17699346 AGCCTAACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.32, G:0.32, T:0.08
Consensus pattern (11 bp):
GAGCATCACCG
Found at i:17699955 original size:26 final size:26
Alignment explanation
Indices: 17699925--17699976 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17699915 GTTGACTTAG
*
17699925 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17699951 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17699977 AATCGAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17700482 original size:158 final size:158
Alignment explanation
Indices: 17700095--17700484 Score: 365
Period size: 158 Copynumber: 2.5 Consensus size: 158
17700085 ACCCATTTTG
* * * * * *
17700095 TGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAGGCCCCAGCCAAATCGA-GGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGC
** * *
17700159 AGTGAGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCGCTG
66 ACAG-GACCGACAGCACGCAGAGGGGGACCAGGCTGATCCTCGGCTTGCACATTATGCCTCGCTG
*
17700224 ACCGACTCAGCGCCGGAATACTCGTTTCA
130 ACCGACTCAGCGCCGGAACACTCGTTTCA
** * ** * * * ** *
17700253 TGGGTTAACTTAGGCATACGGAGTTCATTCCCA-GCCTAAGATCGAATCAGACAGAGGGTTACGA
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGG
* * * * * *
17700317 CAGCAGGACCGACAGCATGTAG-GGGGGACCAGGTTGATCCTTGGCTTGCACATTCTGCCTCTCT
65 CA-CAGGACCGACAGCACGCAGAGGGGGACCAGGCTGATCCTCGGCTTGCACATTATGCCTCGCT
* * * ** *
17700381 GATCGGCTGAGCATTC-GTACACTCGTTTCA
129 GACCGACTCAGC-GCCGGAACACTCGTTTCA
* * **
17700411 TGGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCCCTAGTTGGACCGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGC
17700476 TACAGGACC
66 -ACAGGACC
17700485 AGCAGCGGGA
Statistics
Matches: 178, Mismatches: 48, Indels: 12
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.02
158 149 0.84
159 25 0.14
160 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGC
ACAGGACCGACAGCACGCAGAGGGGGACCAGGCTGATCCTCGGCTTGCACATTATGCCTCGCTGA
CCGACTCAGCGCCGGAACACTCGTTTCA
Found at i:17701143 original size:26 final size:26
Alignment explanation
Indices: 17701105--17701160 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17701095 TGGGTTGACT
*
17701105 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATAAGGAGTTCATCCCCAGTC
*
17701131 TAAGCATAAGGAGTTCATTCCCAGTC
1 TAAGCATAAGGAGTTCATCCCCAGTC
17701157 TAAG
1 TAAG
17701161 ATCGGACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATAAGGAGTTCATCCCCAGTC
Found at i:17701279 original size:183 final size:183
Alignment explanation
Indices: 17700951--17701305 Score: 430
Period size: 183 Copynumber: 1.9 Consensus size: 183
17700941 GTTGACTTAT
* *
17700951 GCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCAGACCAAGGGTTACGACGACAGGATCGACA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACGACAGGATCGACA
* * * ** * *
17701016 GCACGCGGGAGGGACCGGGTCGATCCCCGACTTGCGCATCTGCCTCTCCGGTCGACTGAGCGCCC
66 ACACGCAGGAGGGACCGGGCCGATCCCCGACTTGCGCATCTGCCTCTCCGACCGACTGAACACCC
* *
17701081 GCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAA
131 ACACGCCCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAA
** ** * * *
17701134 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTATGGC-AGCAGGATCGGC
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACGA-CAGGATCGAC
* *
17701198 AACACGTAGG-GGGACCGGGCCGATCCCC-AGCTTGCTCATTCTGCCTCTCCGACCTG-CTGAAC
65 AACACGCAGGAGGGACCGGGCCGATCCCCGA-CTTGCGCA-TCTGCCTCTCCGACC-GACTGAAC
* * * *
17701260 ACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
127 ACCCACACGCCCATTTCGTGGGTTGACTTAAGCATACGGAGTTCAT
17701306 TCCATGTTTA
Statistics
Matches: 144, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
181 1 0.01
182 25 0.17
183 117 0.81
184 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.21
Consensus pattern (183 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACGACAGGATCGACA
ACACGCAGGAGGGACCGGGCCGATCCCCGACTTGCGCATCTGCCTCTCCGACCGACTGAACACCC
ACACGCCCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAA
Found at i:17701497 original size:499 final size:500
Alignment explanation
Indices: 17700557--17701635 Score: 1332
Period size: 499 Copynumber: 2.2 Consensus size: 500
17700547 TCTTCGACCG
* *
17700557 GCCTCTCCGGTCCGCTGACCGCCCGCACGCTCGTTTCATGGGTTGACTT-CGACATACGGAGTTC
1 GCCTCTCCGGT-CGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAG-CATACGGAGTTC
* *
17700621 ATCCCCAGTCTAAGAATACAAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGAC
64 ATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTACGAC
* * * * * *
17700686 AGTAGTATCGACAGCACGCAGAAGGGACTAGGCCGATCCCCGGCTTGCGCATTCTATCTCTCCCA
129 AGCAGGATCGACAACACGCAGAAGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCCA
* * ** *
17700751 CCGGTTGAGCACCTGCAGGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
194 CCGGCTGAACACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * * * * *
17700816 AAGACCCAGCCGGATCGAGTGTTGTGGCAGCGGGACTGGCAGCACACTGAGGGGGATCGGGCCGA
259 AAGACCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGACAACACACAGAGAGGGAGCGGGACGA
* * * *
17700881 TCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCATTTCATTGGTTGA
324 TCCCTGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGA
* * * *
17700946 CTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCAGACCAAGGGTTACGAC-GACAGGA
389 CTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCCGACCAGACCAAGGGTTACGACAG-CAGGA
* **
17701010 TCGACAGCACGC-GGGAGGGACCGGGTCGATCCCCGACTTGCGCA-TCT
453 TCGACAGCACACAGGG-GGGACCGAATCGATCCCCGACTTGCGCATTCT
* *
17701057 GCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCA
1 GCCTCTCCGGTCG-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCA
* * * *
17701122 TCCCCAGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTATGG
65 TCCCCAGTCTAAGCATACA-AAGTTCATTCCCAGTCTAAGATCGAACTGGATC-GAGGGTTACGA
* * * * * * *
17701185 CAGCAGGATCGGCAACACGTAG-GGGGACCGGGCCGATCCCCAGCTTGCTCATTCTGCCTCTCCG
128 CAGCAGGATCGACAACACGCAGAAGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCC
* * *
17701249 ACCTGCTGAACACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTT
193 ACCGGCTGAACACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * *
17701314 TAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGA-TCGACAACACGCAGAGAGGGAGCGGGAT
258 TAAGACCCAGCCGGACCGAGGGTTGTGGCAGCGGGACT-GACAACACACAGAGAGGGAGCGGGAC
* * *
17701378 GATCGCTGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGTACGCTCATTTTATGGGTT
322 GATCCCTGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTT
* * * *
17701443 GACTTAGGCATACGGAGCTCATT-CCAGGTCTAAGATCCGACCAGACCGAGGGTTATGGCAGTAG
387 GACTTAGGCATACGGAGCTCATTCCCA-GTCTAAGATCCGACCAGACCAAGGGTTACGACAGCAG
* * * * *
17701507 GATTGATAGCACACAGGGGGGACCGAATCGATCCTCGGCTTGCGTATTCT
451 GATCGACAGCACACAGGGGGGACCGAATCGATCCCCGACTTGCGCATTCT
** * * * *
17701557 GCCTCTCCCATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA
1 GCCTCTCCGGTC-GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCA
*
17701622 T-TCCATGTCTAAGC
65 TCCCCA-GTCTAAGC
17701636 CCCAGCTGAA
Statistics
Matches: 493, Mismatches: 75, Indels: 22
0.84 0.13 0.04
Matches are distributed among these distances:
498 4 0.01
499 290 0.59
500 197 0.40
501 2 0.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (500 bp):
GCCTCTCCGGTCGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCAT
CCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTACGACAG
CAGGATCGACAACACGCAGAAGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCCACC
GGCTGAACACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GACCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGACAACACACAGAGAGGGAGCGGGACGATC
CCTGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACT
TAGGCATACGGAGCTCATTCCCAGTCTAAGATCCGACCAGACCAAGGGTTACGACAGCAGGATCG
ACAGCACACAGGGGGGACCGAATCGATCCCCGACTTGCGCATTCT
Found at i:17701607 original size:158 final size:158
Alignment explanation
Indices: 17701134--17701950 Score: 555
Period size: 159 Copynumber: 5.2 Consensus size: 158
17701124 CCCAGTCTAA
* * ** * *
17701134 GCATAAGGAGTTCATTCCCA-GTCTAAGATCGGACTGGA-CTGAGGGTTATGGCAGCAGGATCG-
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCGACCAGATC-GAGGGTTGTGGCAGTAGGATCGA
* * * * * * * * * *
17701196 --GCAACACGTAGGGGGACCGGGCCGATCCCCAGCTTGCTCATTCTGCCTCTCCGACCTGCTGAA
64 TAGC-ACAC-AAGGGGGACTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCCACCGGTTGAG
* * * * *
17701259 CACCCACACGCCCGTTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * ** * ** *
17701291 GCATAGGGAGTTCATTCCATGTTTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCCGA-CCAGATCGAGGGTTGTGGCAGTAGGATCGAT
* * * * ** * * *
17701355 AACACGCAGAGAGGGAGC-GGGAT-GATCGCT-GGCTTGCGCATTATGCCTCTCCGGCCAGCTCA
65 AGCACACA-AGGGGGA-CTGGG-TCGATC-CTCGGCTTGCGCATTCTGCCTCTCCCACCGGTTGA
* * *
17701417 GCGCCCGTACGCTCATTTTATGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
17701450 GCATACGGAGCTCATTCCAGGTCTAAGATCCGACCAGACCGAGGGTTATGGCAGTAGGATTGATA
1 GCATACGGAGTTCATTCCATGTCTAAGATCCGACCAGATCGAGGGTTGTGGCAGTAGGATCGATA
* * ** * *
17701515 GCACACAGGGGGGACCGAATCGATCCTCGGCTTGCGTATTCTGCCTCTCCCATCGGTTGAGCGCC
66 GCACACAAGGGGGACTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCCACCGGTTGAGCGCC
*
17701580 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * * * * * *
17701608 GCATACAGAGTTCATTCCATGTCTAAG-CCCCAGCTGAATTGAGGGGTGTGGCAGTGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGATCCGACCAG-ATCGAGGGTTGTGGCAGTAGGATCGAT
* * * * * **
17701672 AGCACACAAAGGGGGACTGGGCCAATCCTCGGCTTGCACATTATGCCACTCTGACCGGCTT-AGC
65 AGCACAC-AAGGGGGACTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCCACCGG-TTGAGC
* * * *
17701736 GCCTGCACACTTGTTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * ** * *
17701767 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGATC-AAGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCGACCAGATCGAGGGTTGTGGCAGTAGGATCGAT
* * * * * *
17701830 AGCACGCAAGGTGGATTGGGTCGATCC-CTGGCTTGCGCATTCTGCCTTTCCCACCGGCTGAGCT
65 AGCACACAAGGGGGACTGGGTCGATCCTC-GGCTTGCGCATTCTGCCTCTCCCACCGGTTGAGCG
* ** *
17701894 CCCGCATGCTCGTTTCGGGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGACTTAG
*
17701924 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17701951 CATACGGAGT
Statistics
Matches: 508, Mismatches: 130, Indels: 44
0.74 0.19 0.06
Matches are distributed among these distances:
156 10 0.02
157 141 0.28
158 134 0.26
159 208 0.41
160 15 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCCGACCAGATCGAGGGTTGTGGCAGTAGGATCGATA
GCACACAAGGGGGACTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCCACCGGTTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:17701784 original size:317 final size:314
Alignment explanation
Indices: 17701134--17701951 Score: 854
Period size: 317 Copynumber: 2.6 Consensus size: 314
17701124 CCCAGTCTAA
* * * * *
17701134 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTATGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACA
* * * * * * *
17701199 ACACGTAGGGGGACCGGGCCGATCCCCAGCTTGC-TCATTCTGCCTCTCCGACCTGCTGAACACC
66 GCACGCAGGGGGACCGGGTCGAT-CCCGGCTTGCGT-ATTCTGCCTCTCCCACCGGCTGAGCACC
* * * * *
17701263 CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCTGG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCCCCAGCTGA
* * * * ** *
17701328 ACCGAGGGTTGTGGCAGCGGGATCGACAACACGCAGAGAGGGAGCGGGATGATCGCTGGCTTGCG
193 ACCGAGGGGTGTGGCAGCGGGACCGACAACACACAAAGAGGGAGCGGGACAATCGCTGGCTTGCA
* * * * *
17701393 CATTATGCCTCTCCGGCCAGCTCAGCGCCCGTACGCTCATTTTATGGGTTGACTTAG
258 CATTATGCCACTCCGACCAGCTCAGCGCCCGCACACTCATTTCATGGGTTGACTTAG
* * * * * *
17701450 GCATACGGAGCTCATT-CCAGGTCTAAGATCCGACCAGACCGAGGGTTATGGCAGTAGGATTGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGAC
* ** * * *
17701514 AGCACACAGGGGGGACCGAATCGATCCTCGGCTTGCGTATTCTGCCTCTCCCATCGGTTGAGCGC
65 AGCACGCA-GGGGGACCGGGTCGATCC-CGGCTTGCGTATTCTGCCTCTCCCACCGGCTGAGCAC
*
17701579 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCCCCAGCTG
** * ** * * *
17701644 AATTGAGGGGTGTGGCAGTGGGACCGGTAGCACACAAAGGGGGA-CTGGGCCAATC-CTCGGCTT
192 AACCGAGGGGTGTGGCAGCGGGACCGACAACACACAAAGAGGGAGC-GGGACAATCGCT-GGCTT
* * * * ** *
17701707 GCACATTATGCCACTCTGACCGGCTTAGCGCCTGCACACTTGTTTCGTGGGTTGACTTAG
255 GCACATTATGCCACTCCGACCAGCTCAGCGCCCGCACACTCATTTCATGGGTTGACTTAG
* * * ***
17701767 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATC-AAGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACA
* ** * * *
17701831 GCACGCAAGGTGGATTGGGTCGATCCCTGGCTTGCGCATTCTGCCTTTCCCACCGGCTGAGCTCC
66 GCACGC-AGGGGGACCGGGTCGATCCC-GGCTTGCGTATTCTGCCTCTCCCACCGGCTGAGCACC
* *
17701896 CGCATGCTCGTTTCGGGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGC
17701952 ATACGGAGTT
Statistics
Matches: 409, Mismatches: 82, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
315 5 0.01
316 178 0.44
317 222 0.54
318 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACA
GCACGCAGGGGGACCGGGTCGATCCCGGCTTGCGTATTCTGCCTCTCCCACCGGCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAGCTGAACC
GAGGGGTGTGGCAGCGGGACCGACAACACACAAAGAGGGAGCGGGACAATCGCTGGCTTGCACAT
TATGCCACTCCGACCAGCTCAGCGCCCGCACACTCATTTCATGGGTTGACTTAG
Found at i:17701953 original size:26 final size:26
Alignment explanation
Indices: 17701924--17701976 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17701914 GTTGGCTTAG
17701924 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
17701950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17701976 G
1 G
17701977 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17702139 original size:26 final size:26
Alignment explanation
Indices: 17702102--17702154 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17702092 GTTGGCTTAG
*
17702102 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
17702128 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
17702154 G
1 G
17702155 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:17702348 original size:26 final size:26
Alignment explanation
Indices: 17702312--17702364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17702302 GTTGACTTAG
17702312 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17702338 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17702364 G
1 G
17702365 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17702526 original size:26 final size:26
Alignment explanation
Indices: 17702496--17702548 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17702486 GTTGGCTTAG
*
17702496 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAATTCATTCCTA-GTCTAA
*
17702522 GCATACTGAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
17702548 G
1 G
17702549 ATCAGACCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:17703225 original size:26 final size:26
Alignment explanation
Indices: 17703189--17703238 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17703179 AACTTAGGGA
17703189 TACGGAGTTCA-TCCGCAGTCTAAGCG
1 TACGGAGTTCATTCC-CAGTCTAAGCG
17703215 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17703239 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:17703685 original size:158 final size:157
Alignment explanation
Indices: 17703219--17703703 Score: 492
Period size: 158 Copynumber: 3.1 Consensus size: 157
17703209 TAAGCGTACG
* * *
17703219 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGACGGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACACA
* * * * *
17703284 GGGGGGA-CTGGG-CAGATCCCCGGCATACACATTCTGCCTCTCCGGCCCGCTGAGCGCCCGGAC
66 GGGGGGATC-GGGCCA-ATCCCCGACTTGCGCATTCTGCCTCTCCGG-CCGCTGAGCGCCCGCAC
* **
17703347 GCCCATTTCATGGGTTGGCTTAGGCATAGG
128 GCTCATTTCATGGGTTGGCTTAGGCATACA
** * * * * * ** * * **
17703377 GAGTTCATT-CCATGTCTAAGCCCCAGCTAGAAT-GAGGGTTGTGGTAGCGGGACCGACAGCATG
1 GAGTTCATTCCCA-GTCTAAG-ATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACA
** ** * * * * *
17703440 CAGAGGGGGATCGGGCCGTTCCTTGACTTGCGCATTATGCCTCTTCGGCCTGCTCAGCGTCAGCA
64 CAG-GGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCGCCCGCA
* * *
17703505 TGCTCATTTCGTGGGTTGGCTTATGCATACA
127 CGCTCATTTCATGGGTTGGCTTAGGCATACA
* * * * *
17703536 GAGTTCATTCCCAGTCTAAGATTGGATCGGTTCAAGGGTTACGACAGCAGGATCGACAGCACATA
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACACA
17703601 GGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGC
66 GGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCG-CTGAGCGCCCGCACGC
*
17703666 TCGTTTCATGGGTTGGCTTAGGCATACA
130 TCATTTCATGGGTTGGCTTAGGCATACA
17703694 GAGTTCATTC
1 GAGTTCATTC
17703704 AATGCCTAAG
Statistics
Matches: 253, Mismatches: 65, Indels: 18
0.75 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 134 0.53
159 110 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACACA
GGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGCTGAGCGCCCGCACGCT
CATTTCATGGGTTGGCTTAGGCATACA
Found at i:17704437 original size:26 final size:26
Alignment explanation
Indices: 17704408--17704460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17704398 GTTGACTTAG
17704408 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17704434 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17704460 G
1 G
17704461 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17704727 original size:159 final size:159
Alignment explanation
Indices: 17704470--17704935 Score: 487
Period size: 158 Copynumber: 2.9 Consensus size: 159
17704460 GATCAAACTG
* * * * * * * *
17704470 GACCGAGGGTT-CAGCAGTAGGATCGGCAGCAC--GGAGGGGGACCGGGTCGATCCCCGACTTAC
1 GACCGAGGGTTGCGGCAGTAGGACCGACAGCACAAAGAGGGGGATCGAGTCGATCCCCGGCTTGC
* * * * *
17704532 GCATTCTGCCTCTCTGGCCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-G
* * *
17704597 GAGTTAATTCCATGTCTAAGCCCCAGCCGA
130 AAGTTAATTCCATGTCTAAGCACCAGACGA
* * * ***
17704627 -ACCGAGGGTTGTGGCAGTGGGACCGGCAGCATGCAGAGGGGGATCGAG-CTGATCCCCGGCTTG
1 GACCGAGGGTTGCGGCAGTAGGACCGACAGCACAAAGAGGGGGATCGAGTC-GATCCCCGGCTTG
* * * * * * *
17704690 CGCATTATGCCTCTCTGACTGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
65 CGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAG
* * * *
17704755 AAATTTATTCCCA-GTCTAAG-ATCAGACTA
130 AAGTTAATT-CCATGTCTAAGCACCAGACGA
* * * * *
17704784 GACCGAGGGTTGCGGTAGTAGGATCGATAGCACAAAGGGGGGGATCGAGTCGATCCCTGGCTTGC
1 GACCGAGGGTTGCGGCAGTAGGACCGACAGCACAAAGAGGGGGATCGAGTCGATCCCCGGCTTGC
*
17704849 GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
66 GCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-G
*
17704914 AAGTTCATTCCATGTCTAAGCA
130 AAGTTAATTCCATGTCTAAGCA
17704936 TACGGAGTTC
Statistics
Matches: 249, Mismatches: 50, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
156 10 0.04
157 21 0.08
158 124 0.50
159 93 0.37
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
GACCGAGGGTTGCGGCAGTAGGACCGACAGCACAAAGAGGGGGATCGAGTCGATCCCCGGCTTGC
GCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGA
AGTTAATTCCATGTCTAAGCACCAGACGA
Found at i:17705241 original size:26 final size:26
Alignment explanation
Indices: 17705211--17705263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17705201 GTTGACTTAG
17705211 GCATAC-GAAGTTCATCCCTAGTCTAA
1 GCATACAG-AGTTCATCCCTAGTCTAA
*
17705237 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
17705263 G
1 G
17705264 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:17711433 original size:26 final size:26
Alignment explanation
Indices: 17711397--17711449 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17711387 GTTGGCTTAG
17711397 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17711423 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17711449 G
1 G
17711450 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17712150 original size:157 final size:158
Alignment explanation
Indices: 17711790--17712220 Score: 415
Period size: 157 Copynumber: 2.7 Consensus size: 158
17711780 CCCAGTCTAA
* ** **
17711790 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTACGAAAGCAGGATCGTT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTACGGTAGCAGGATCGAC
* ** * * *
17711854 AGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTAGACTGAGCGC
65 AGCACGCAGAGGGGATCGGGCCGATCCTCGGCTCACGCATTATGCCTCTCCGATAGACTCAGCGC
*
17711919 CCGCACGCCCGTTTCGTGGGTTAGCTTAG
130 CCGCACGCCCGCTTCGTGGGTTAGCTTAG
* * * ** * * * ** *
17711948 GTATAGGGAGTTCATT-TCATGTCTAAGGCCCAG-TCGGACTGAGGGTTGTGGTAGC-GAGACCG
1 GCATATGGAGTTCATTCCCA-GTCTAA-GATCAGACCGAACCGAGGGTTACGGTAGCAG-GATCG
* * * * * *
17712010 ACAGCACGCAGAGGGGATTGGGCCGATCCTC-GCTCATGCATTATGCCTCTTCGATCGGCTCAGT
63 ACAGCACGCAGAGGGGATCGGGCCGATCCTCGGCTCACGCATTATGCCTCTCCGATAGACTCAGC
* * *
17712074 GCCCGCATGCTCGCTTCGTGGGTT-GACTTAT
128 GCCCGCACGCCCGCTTCGTGGGTTAG-CTTAG
*
17712105 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGTAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGTAGCAGGATCGACA
* * * ** *
17712170 GCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
66 GCACGCAGA-GGGGATCGGGCCGATCCTCGGCTCACGCATTATGCCTCTCC
17712221 AACTGGCTGA
Statistics
Matches: 210, Mismatches: 53, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
156 5 0.02
157 102 0.49
158 84 0.40
159 19 0.09
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGAGGGGATCGGGCCGATCCTCGGCTCACGCATTATGCCTCTCCGATAGACTCAGCGCC
CGCACGCCCGCTTCGTGGGTTAGCTTAG
Found at i:17712300 original size:26 final size:26
Alignment explanation
Indices: 17712266--17712316 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17712256 TGGCTTAGGT
17712266 ATACAGAGTTCATTC-CATGTCTAAGC
1 ATACAGAGTTCATTCACA-GTCTAAGC
*
17712292 ATACGGAGTTCATTCACAGTCTAAG
1 ATACAGAGTTCATTCACAGTCTAAG
17712317 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCACAGTCTAAGC
Found at i:17713016 original size:26 final size:26
Alignment explanation
Indices: 17712980--17713032 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17712970 GTTGACTTAG
*
17712980 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
17713006 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17713032 G
1 G
17713033 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17713364 original size:159 final size:157
Alignment explanation
Indices: 17713006--17713406 Score: 421
Period size: 159 Copynumber: 2.5 Consensus size: 157
17712996 CCCAGTCTAA
* * * *
17713006 GCATATGGAGTTCATTCCCAATCTAAGATCAGACTAGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATATGGAGTTCATT-CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * ** *
17713071 GCACGCAGGGGGTACCGGGCCGATCCCTAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACC
65 GCACGCAGGGGGGAACGGGCCGATCCCTAGCTTACGCATTATGCCTCTCCGATCGGCCCAACACC
*
17713136 CGCACACCCGTTTCATGGGTTGGCTTAG
130 CGCACACCCGTTTCATGGGTTGACTTAG
* ** * * * * *
17713164 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-CCCGAACCGAGGGTTGTGGTAGCAGGA-CGGG
1 GCATATGGAGTTCATTCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGGTAGCAGGATC-GA
* * *
17713227 CAGCACGCAGAGGGGGAATGGGCCGATCCAC-GGCTTGCGCATTATGCCTCTCCGATCGGCCCAA
63 CAGCACGCAG-GGGGGAACGGGCCGATCC-CTAGCTTACGCATTATGCCTCTCCGATCGGCCCAA
* * *
17713291 CACCCGTACGCTCGTTTCATGGGTTGACTTAG
126 CACCCGCACACCCGTTTCATGGGTTGACTTAG
* * * *
17713323 GCATATAGAATTCATTCCTAGTCTAAGATCAGACTGGACCGAAGGTTGCGGTAGCAGGATCAACA
1 GCATATGGAGTTCATTCC-AGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACA
** *
17713388 GCACATAGGGGGGATCGGG
65 GCACGCAGGGGGGAACGGG
17713407 TCTGACCCCG
Statistics
Matches: 193, Mismatches: 42, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 63 0.33
159 123 0.64
160 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGAACGGGCCGATCCCTAGCTTACGCATTATGCCTCTCCGATCGGCCCAACACCC
GCACACCCGTTTCATGGGTTGACTTAG
Found at i:17713495 original size:158 final size:155
Alignment explanation
Indices: 17713006--17713507 Score: 461
Period size: 158 Copynumber: 3.2 Consensus size: 155
17712996 CCCAGTCTAA
* * * *
17713006 GCATATGGAGTTCATTCCCAATCTAAGATCAGACTAGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATATGGAGTTCATT-CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
17713071 GCACGCAGGGGGTACCGGGCCGATCCCTAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACC
65 GCACACAGGGGGAATCGGGCCGACCCCGA-CTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACC
* * *
17713136 CGCACACCCGTTTCATGGGTTGGCTTAG
128 CGTACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
17713164 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-CCCGAACCGAGGGTTGTGGTAGCAGGA-CGGG
1 GCATATGGAGTTCATTCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGGTAGCAGGATC-GA
* * * * ** *
17713227 CAGCACGCAGAGGGGGAAT-GGGCCGATCCACGGCTTGCGCATTATGCCTCTCCGATCGGCCCAA
63 CAGCA--CACAGGGGGAATCGGGCCGA-CCCCGACTTGCGCATTCTGCCTCTCCG-TCGGCTGAG
*
17713291 CACCCGTACGCTCGTTTCATGGGTTGACTTAG
124 CACCCGTACGCTCGTTTCATGGGTTGGCTTAG
* * * *
17713323 GCATATAGAATTCATTCCTAGTCTAAGATCAGACTGGACCGAAGGTTGCGGTAGCAGGATCAACA
1 GCATATGGAGTTCATTCC-AGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * *
17713388 GCACATAGGGGGGATCGGGTCTGACCCCGACTTGGGCATTCTACCTCTCCTGTCGGTTGAGCGCC
65 GCACACAGGGGGAATCGGG-CCGACCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACC
** *
17713453 CGTACGCTTATTTCGTGGGTTGGCTTAG
128 CGTACGCTCGTTTCATGGGTTGGCTTAG
*
17713481 GCATACGGAGTTCATTCCAAGTCTAAG
1 GCATATGGAGTTCATTCC-AGTCTAAG
17713508 CATACAGAGT
Statistics
Matches: 269, Mismatches: 62, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 14 0.05
158 129 0.48
159 114 0.42
160 12 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACACAGGGGGAATCGGGCCGACCCCGACTTGCGCATTCTGCCTCTCCGTCGGCTGAGCACCCGT
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17713510 original size:26 final size:26
Alignment explanation
Indices: 17713481--17713559 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
17713471 GTTGGCTTAG
*
17713481 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
17713507 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
17713533 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
17713559 G
1 G
17713560 ATCAGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:17714200 original size:159 final size:159
Alignment explanation
Indices: 17714011--17714415 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 159
17714001 CCTCGGCTCA
* * * * *
17714011 CGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCACACAC-CTTTTTCATGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCACACGCTC-ATTTCATAGGTTGGCTTAGGCATA
* * * * *
17714075 GGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCGAGGTTTGTGGCATCGGGACCGACAGCAC
65 CGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCAC
* * * *
17714139 GTAGAAGGGG-ATCGGGTCGATCCCCGGCTTG
130 GCAG--GGGGCATCGGGCCGATCCCCGACTTC
* * * *
17714170 TGCATTATGCCTCTCCGGTCAGCTCAGCGCCCGA-ACGCTCATTTCATAGGTTGACTTAGGCATA
1 CGCATTCTGCCTCTCCGGTCAGCTGAGCGCCC-ACACGCTCATTTCATAGGTTGGCTTAGGCATA
* * * * *
17714234 CGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCA
65 CGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCA
*
17714297 CGCAGGGGGCGTCGGGCCGATCCCCGACTTC
129 CGCAGGGGGCATCGGGCCGATCCCCGACTTC
* * * * * *
17714328 CGCATTCTGCCTCTCCAG-CCGACTGAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTCCGGTCAG-CTGAGCGCCCACACGCTCATTTCATAGGTTGGCTTAGGCATA
17714392 CGGAGTTCATTCCATGTCTAAGCA
65 CGGAGTTCATTCCATGTCTAAGCA
17714416 TACGAAGTTC
Statistics
Matches: 202, Mismatches: 35, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
157 9 0.04
158 87 0.43
159 101 0.50
160 5 0.02
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (159 bp):
CGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCACACGCTCATTTCATAGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACG
CAGGGGGCATCGGGCCGATCCCCGACTTC
Found at i:17714386 original size:158 final size:157
Alignment explanation
Indices: 17713912--17714413 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 157
17713902 CACAGTCTAA
* * * * * * * * *
17713912 GCATACGAAGTTGATTCCCA-ATCTAAGATCGGATCAAATCGAGGGTTGCGGTAGCAAGATCGGC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
17713976 AACACGTAGGGGGGACCCGGCTGATCCTCGGC-TCACGCATTCTGCCTCTTCGGTCGGCTGAGCG
65 AGCACGTAGGGGGG-TCGGGCCGATCCCCGGCTTC-CGCATTCTGCCTCTCCGGTCGACTGAGCG
* * * *
17714040 CCCACACAC-CTTTTTCATGGGTTGGCTTAG
128 CCCGCACGCTC-ATTTCATAGGTTGGCTTAG
* * ** * * * * *
17714070 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCGAGGTTTGTGGCATCGGGACCGAC
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * *
17714134 AGCACGTAGAAGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTC-AGCTCAGC
65 AGCACGTAG--GGGGGTCGGGCCGATCCCCGGCTTCCGCATTCTGCCTCTCCGGTCGA-CTGAGC
* *
17714198 GCCCGAACGCTCATTTCATAGGTTGACTTAG
127 GCCCGCACGCTCATTTCATAGGTTGGCTTAG
*
17714229 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
17714293 AGCACGCAGGGGGCGTCGGGCCGATCCCCGACTTCCGCATTCTGCCTCTCCAGCCGACTGAGCGC
65 AGCACGTAGGGGG-GTCGGGCCGATCCCCGGCTTCCGCATTCTGCCTCTCCGGTCGACTGAGCGC
* * *
17714358 CCGCACGCTCGTTTCGTTGGTTGGCTTAG
129 CCGCACGCTCATTTCATAGGTTGGCTTAG
*
17714387 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
17714414 CATACGAAGT
Statistics
Matches: 269, Mismatches: 63, Indels: 24
0.76 0.18 0.07
Matches are distributed among these distances:
157 10 0.04
158 136 0.51
159 114 0.42
160 9 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGTCGGGCCGATCCCCGGCTTCCGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
GCACGCTCATTTCATAGGTTGGCTTAG
Found at i:17714424 original size:26 final size:26
Alignment explanation
Indices: 17714387--17714439 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17714377 GTTGGCTTAG
*
17714387 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
17714413 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
17714439 G
1 G
17714440 ATCTGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:17714626 original size:196 final size:184
Alignment explanation
Indices: 17714229--17714794 Score: 567
Period size: 184 Copynumber: 3.0 Consensus size: 184
17714219 GTTGACTTAG
* * * * **
17714229 GCATACGAAGTTCATTCCCAGTCTAAGA-TCAGACCGGATCGAGGGTTGTGGCAGCAGGATC-GA
1 GCATACGAAGTTCATTCCCAATCTAAGATTGA-ACCGGACCAAGGGTTGCAGCAGCAGGATCAG-
* * * * * *
17714292 CAGCACGCAGG-GGG-CGTCGGGCCGATCCCCGACTTCCGCATTCTGCCTCTCC-AGCCGACTGA
64 CAGCACGCAGGAGGGAC--CGGGTCGATGCCTGGCTTGCGCATTCTGCCTCTCCGA-TCGACTGA
* *
17714354 GCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * *
17714413 GCATACGAAGTTCATTCCTAGTCTAAGATCTG-ACCGGATCGAGGGTTACGGTAGTAGTACCAGC
1 GCATACGAAGTTCATTCCCAATCTAAGAT-TGAACCGGACCAAGGG-T----T-GCAG---CAGC
* * * *
17714477 AGTAAGATCAGCAGCACGTAGGAGGGACCGGGTCGAT-CTTCGGCTTGTGCATTCTACCTCTCCG
56 AG---GATCAGCAGCACGCAGGAGGGACCGGGTCGATGCCT-GGCTTGCGCATTCTGCCTCTCCG
* * *
17714541 ATCGATTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATCCCCA-GT
117 ATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGT
17714605 CTAA
181 CTAA
* *
17714609 GCATAC-AGAGTTCATTCCCAATCTAAGATTGAATCGGACCAAGGGTTGCAGCAGCAGGATCGGC
1 GCATACGA-AGTTCATTCCCAATCTAAGATTGAACCGGACCAAGGGTTGCAGCAGCAGGATCAGC
* * * *
17714673 AGCATGCAGGGGGGATCGGGTCGATGCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
65 AGCACGCAGGAGGGACCGGGTCGATGCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
*
17714738 CCGCATGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
17714793 GC
1 GC
17714795 CCTAGTCAGA
Statistics
Matches: 321, Mismatches: 36, Indels: 50
0.79 0.09 0.12
Matches are distributed among these distances:
183 4 0.01
184 147 0.46
185 3 0.01
186 1 0.00
187 6 0.02
189 1 0.00
190 6 0.02
191 1 0.00
193 6 0.02
195 5 0.02
196 132 0.41
197 8 0.02
198 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAATCTAAGATTGAACCGGACCAAGGGTTGCAGCAGCAGGATCAGCA
GCACGCAGGAGGGACCGGGTCGATGCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
Found at i:17714976 original size:26 final size:26
Alignment explanation
Indices: 17714926--17714978 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17714916 GTTGGCTTAG
*
17714926 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17714952 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17714978 G
1 G
17714979 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17715679 original size:26 final size:25
Alignment explanation
Indices: 17715649--17715707 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
17715639 GTTGACTTAG
* *
17715649 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGACTTCAT-CCCAGTCTAA
*
17715675 GCATACAGACTTCATTCCAGTCTAA
1 GCATACAGACTTCATCCCAGTCTAA
17715700 G-AT-CAGAC
1 GCATACAGAC
17715708 CAGACCGAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.17
24 2 0.07
25 10 0.33
26 13 0.43
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (25 bp):
GCATACAGACTTCATCCCAGTCTAA
Found at i:17716148 original size:158 final size:157
Alignment explanation
Indices: 17715675--17716174 Score: 504
Period size: 158 Copynumber: 3.2 Consensus size: 157
17715665 CCCAGTCTAA
* * * * * *
17715675 GCATACAGACTTCATTCCA-GTCT-AAGATCAGACCAGACCGAGGGTTGCGGCAATAGGATTGGC
1 GCATACAGAGTTCATTCCATGTCTAAAAAT-AGACCAAACCGAGGGTTGCGGCAGTAGGATCGGT
* * * * ** *
17715738 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTTTCTAGCCGGCTGAGTGC
65 AGCACGCAGGGGGGACCG-GCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
17715803 CCGCACGCCTGTTTCATGGGTTGGCTTAG
129 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
* ** *** * * *
17715832 GCATA-GGCAGTTCATTCCATGTCTAAGCACCTACCGAACCGAGGGTTGTGGCAGTGGGATCGGT
1 GCATACAG-AGTTCATTCCATGTCTAAAAATAGACCAAACCGAGGGTTGCGGCAGTAGGATCGGT
* * ** * * * * *
17715896 AGCACACAGAGTGGGATCCGATCGATCCTCGGCTTGCGCATTATGACTCTCCGACCGGCTCAACG
65 AGCACGCAG-GGGGGA-CCGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
** *
17715961 CCCGCACGCTCATTTCGTGGGTTGACTTAG
128 CCCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * * *
17715991 GCATACAGAGTTCATTCCCA-GTCTAAAAATGGACCAAACCAAGGGTTGCGGCAGCAGGATCGAT
1 GCATACAGAGTTCATT-CCATGTCTAAAAATAGACCAAACCGAGGGTTGCGGCAGTAGGATCGGT
* * *
17716055 AGCACGCAGGGGGGACCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGACC-GGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
*
17716120 CCGCACACTTGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
*
17716149 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17716175 GCATACGAAG
Statistics
Matches: 270, Mismatches: 64, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 20 0.07
158 125 0.46
159 118 0.44
160 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAAAATAGACCAAACCGAGGGTTGCGGCAGTAGGATCGGTA
GCACGCAGGGGGGACCGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:17716186 original size:26 final size:26
Alignment explanation
Indices: 17716149--17716201 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17716139 GTTGGCTTAG
*
17716149 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
17716175 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
17716201 G
1 G
17716202 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:17716720 original size:159 final size:158
Alignment explanation
Indices: 17716430--17716861 Score: 408
Period size: 159 Copynumber: 2.7 Consensus size: 158
17716420 TAGCACACAG
* * ** * * * * *
17716430 AGGG-GGACCGGGCTGATCCCCAACTTGCGCATTATGCCTCTCCGGCCGACTGAGCACCCGCATG
1 AGGGCGGAACGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGTCAG-CTGAGCACCCGAACG
* * * * * *
17716494 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCGAAGCCCCAGTCGGACAGA
65 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCGAAGCACCAGCCAGACAGA
* * * * *
17716558 GGGTTATGGTAGTGGGATCGACCGCATGC
130 GGGTTACGGCAGTAGGATCGACAGCACGC
* ** * * *
17716587 AGAGGGGGAACGGGTGGATCCTCGGCTTGCATATTATGCCTCTCCAGTCAGCTCAGCACCCGAAC
1 AG-GGCGGAACGGGCCGATCCCCGGCTTGCACATTATGCCTCTCC-GTCAGCTGAGCACCCGAAC
* * *
17716652 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACC
64 GCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCGAAGCACCAG-CCAGA-C
* *
17716715 A-AGGGTTGCGGCAGTAGGATCGACAGCACGT
127 AGAGGGTTACGGCAGTAGGATCGACAGCACGC
* * * * * * *
17716746 AGGGCGGACCGGGCCGATCCCCTGCTTGCACATTCTGCCTCTTCGATCGGTTGAGCACCCGTACG
1 AGGGCGGAACGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCG-TCAGCTGAGCACCCGAACG
* *
17716811 TTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCCAAGCA
65 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCGAAGCA
17716862 TATGGAGTTC
Statistics
Matches: 221, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 6 0.03
158 95 0.43
159 112 0.51
160 8 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGGGCGGAACGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGTCAGCTGAGCACCCGAACGC
TCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCGAAGCACCAGCCAGACAGAG
GGTTACGGCAGTAGGATCGACAGCACGC
Found at i:17717107 original size:684 final size:684
Alignment explanation
Indices: 17715607--17717579 Score: 1910
Period size: 684 Copynumber: 2.9 Consensus size: 684
17715597 TGCCTCTCTG
* * * *
17715607 GTCGGCTGAGCGTCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
1 GTCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * *
17715672 TAAGCATACAGACTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAATAGGATTGG
66 TAAGCATACA-AATTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG---TAGCA----
* * ** * * *
17715737 CAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTTTCTAGCCGGCTGAGTG
123 CA-CACGCA-GGGGGACCG-GGCGATCCCCAACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTG
* * * *
17715802 CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCACCTACC
185 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGC-CCTAGC
* * * * * * *
17715867 GAACCGAGGGTTGTGGCAGTGGGATCGGTAGCACACAGAGTGGGATCCGATCGATCCTCGGCTTG
249 GGACAGAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTG
* * * *
17715932 CGCATTATGACTCTCCGACCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
314 CGCATTATGCCTCTCCG-CCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
17715997 AGAGTTCATTCCCAGTCTAAAAAT-GGACCAAACCAAGGGTTGCGGCAGCAGGATCGATAGCACG
378 GGAGTTCATTCCCAGTCT-AAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGATAGCACG
* * * *
17716061 CAGGGGGGACCAGGCCGATCCTC-GACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCA
442 TAGGGGGGACCAGGCCGATCCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCA
*
17716125 CACTT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCA
507 CA-TTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
* * * * *
17716189 TTCTCAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCAGCAGGACCAGTAGCAGGATCGACAGC
571 TTCCCAGTCTAAGATCAAACAGGACCGAGGGTTGTAGCAGCAGGACCAGCAGCAGGATCGACAGC
* * * * * * *
17716254 ACATAAAGGGGACCGAGCCGGTCCTCGGCCTATGCATTCTACCTCTTCG
636 ACACAAAGGGGACAGAGCCGGACCCCGACCTATGCATTCTACCTCTCCA
* * * * * *
17716303 GCCGACTA-AGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATG
1 GTCGGC-AGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
* * ***** * * * *
17716366 TCTAAGCCCTAGCCGAA-TCGAGGGTTGTGGT-AG-T-AGGACCGG-CAGCGGGAT-CGGTAGCA
64 TCTAAG-CATA--CAAATTC-ATTCCAGT-CTAAGATCA-GACCGGACCGAGGGTTGCGGTAGCA
* * * **
17716425 CACA-G-AGGGGGACCGGGCTGATCCCCAACTTGCGCATTATGCCTCTCCGGCCGACTGAGCACC
123 CACACGCAGGGGGACCGGGC-GATCCCCAACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGCC
* * * *
17716488 CGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAGTCGG
187 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCTAG-CGG
* * * * * * * *
17716553 ACAGAGGGTTATGGTAGTGGGATCGACCGCATGCAGAGGGGGAACGGGTGGATCCTCGGCTTGCA
251 ACAGAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCG
* * * * *
17716618 TATTATGCCTCTCCAGTCAGCTCAGCACCCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGG
316 CATTATGCCTCTCC-GCCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
17716683 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACGTAG
380 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGATAGCACGTAG
* * * * * * * *
17716748 GGCGGACCGGGCCGATCCCCTG-CTTGCACATTCTGCCTCTTCGATCGGTTGAGCACCCGTACGT
445 GGGGGACCAGGCCGATCCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACAT
* * *
17716812 TCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATATGGAGTTCATTCC
510 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * * * *
17716877 CAGTCTAAGATCAAACAGGACCGAGGG-T-TACGATAGTAGGACTAGCAGCAGGATTGGCAGCAT
575 CAGTCTAAGATCAAACAGGACCGAGGGTTGTA-G-CAGCAGGACCAGCAGCAGGATCGACAGCAC
* ** * * * * *
17716940 GCAGGGGGGATAGGGCC-GACCCCGACTTGTGCATTCTATCTCTCCA
638 ACAAAGGGGACAGAGCCGGACCCCGACCTATGCATTCTACCTCTCCA
* *
17716986 GTCGGCAGAGCGCCCGCACGCTCGTCTTTGGGGGTTGACTTAGGCATACGGAGTT-ATCCCCA-T
1 GTCGGCAGAGCGCCCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
17717049 CTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATT
65 CTAAGCATACAAA-TTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGC------
* ** * ** * ** *
17717114 GAAAACACGCAAGCAGGACCGGGCAATCCCTCAACTCACACATTCTG-CTCTCCAATCGGTTGAG
122 --ACACACGC-AGGGGGACCGGGCGATCCC-CAACTTGCGCATTCTGCCTCTCCAGCCGGCTGAG
* *
17717178 TGCCCG-ACCGCCCGTTTTGTGGGTTGGCTTAGGCATAGGAAGTTCATT-CATGTCTAAGGCCTA
183 TGCCCGCA-CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCTA
* * * * *
17717241 GCCGACTGAGGGTTGTGGCAGTTGGGCT-GGCAGCACGCAGAGGGGGATCGGGCCGATCC-CTGA
247 GCGGACAGAGGGTTGTGGCAG-TGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTC-GG
* * * *
17717304 CTTGCGCATTATCCCTCTTCGCCGGCTCAGCGCCCCGCACGCGTCGTTTCATGGGTTGACTTAGG
310 CTTGCGCATTATGCCTCTCCGCCGGCTCAGC-ACCCGCACGC-TCGTTTCGTGGGTTGACTTAGG
* * * *** *
17717369 CATACGGAGTTCATTCCCAATCTAAGATCAGAACAGACCGAGGGTCATGACAGTAGGATCGATAG
373 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGATAG
* * * * * * *
17717434 CACGTAGGGGGGTACTAGG-CTAGT-GCTTGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGTG
438 CACGTAGGGGGG-ACCAGGCCGA-TCCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCG
* * * *
17717497 CTCGCACACTCGTTTCGTGGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGA
501 CCCGCACATTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
*
17717562 GTTCATTCCCAGTTTAAG
566 GTTCATTCCCAGTCTAAG
17717580 TTTGGATCGG
Statistics
Matches: 1022, Mismatches: 208, Indels: 96
0.77 0.16 0.07
Matches are distributed among these distances:
679 3 0.00
680 2 0.00
681 9 0.01
682 16 0.02
683 63 0.06
684 453 0.44
685 3 0.00
686 1 0.00
687 2 0.00
688 2 0.00
691 10 0.01
692 74 0.07
693 113 0.11
694 162 0.16
695 29 0.03
696 61 0.06
697 11 0.01
698 6 0.01
699 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (684 bp):
GTCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
TAAGCATACAAATTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACACACGCA
GGGGGACCGGGCGATCCCCAACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCACGCCC
GTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCTAGCGGACAGAGGGTT
GTGGCAGTGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCT
CTCCGCCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGATAGCACGTAGGGGGGACCAGG
CCGATCCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACATTCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CAAACAGGACCGAGGGTTGTAGCAGCAGGACCAGCAGCAGGATCGACAGCACACAAAGGGGACAG
AGCCGGACCCCGACCTATGCATTCTACCTCTCCA
Found at i:17718623 original size:25 final size:27
Alignment explanation
Indices: 17718588--17718640 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
17718578 TTGACTTAGC
17718588 GCATAACGGAGTTC-TCCCCAGTCTAA
1 GCATAACGGAGTTCATCCCCAGTCTAA
* *
17718614 GCAT-ACGGAGTTCATTCCTAGTCTAA
1 GCATAACGGAGTTCATCCCCAGTCTAA
17718640 G
1 G
17718641 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (27 bp):
GCATAACGGAGTTCATCCCCAGTCTAA
Found at i:17719640 original size:184 final size:183
Alignment explanation
Indices: 17719268--17719680 Score: 488
Period size: 184 Copynumber: 2.3 Consensus size: 183
17719258 CGCACGCTCG
* * *
17719268 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCGCCA-GTCTAAGCATATGGAGTTCATTCTAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCAG
* * * * *
17719332 TCTAAGATCAGACCAGACTGAGGGTTGCAACAGAAAGTTCGACAGCACGCAGGGGGGATCGGGCT
65 TCTAAGATCAGACCAGACCGAGGGTTGCAACAGAAAGATCGACAGCACGAAGGGGGGACCGGCCT
** * * * **
17719397 GATCGTCAGCTTACGCATTCTGCCTCTCCGACCAGCTTAGCACCCACATGCCCA
130 GATCCCCAGATTACACATTCTGCCTCTCCGACCAGCTGAGCACCCACACACCCA
*
17719451 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGTATGGAGTTCATTCCCAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATT-CCAG
* * * * ** *
17719516 TCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATGGCACGAAGGGGGGCCCAGGCC
65 TCTAAGATCAGACCAGACCGAGGGTTGCAACAGAAAGATCGACAGCACGAAGGGGGGACC-GGCC
* * * * * * ** *
17719581 T-ATCCCCGGATTGCATATTTTGCCTCTCCGGCCGGCTGAGGGCCCGCACACCCA
129 TGATCCCCAGATTACACATTCTGCCTCTCCGACCAGCTGAGCACCCACACACCCA
*
17719635 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17719681 CCCAGCCAGA
Statistics
Matches: 194, Mismatches: 33, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
182 3 0.02
183 53 0.27
184 134 0.69
185 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCAGT
CTAAGATCAGACCAGACCGAGGGTTGCAACAGAAAGATCGACAGCACGAAGGGGGGACCGGCCTG
ATCCCCAGATTACACATTCTGCCTCTCCGACCAGCTGAGCACCCACACACCCA
Found at i:17719922 original size:158 final size:159
Alignment explanation
Indices: 17719501--17720017 Score: 438
Period size: 158 Copynumber: 3.3 Consensus size: 159
17719491 CTAAGCGTAT
*
17719501 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATGGCACG-
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGC
* * * * * * * * * *
17719565 A-AGGGGGGCCCAGGCCTATCCCCGGATTGC-ATATTTTGCCTCTCCGGCCGGCTGAGGGCCCGC
66 AGAAGAGGACCGA-GTCGATCCCCGGCTTGCGCT-TTATGCCTCTCCGGCCGGCTGAGCGCCCGC
* * * *
17719628 ACACCCATTTCGTGGGTTGGCTTAGGCATAG
129 ACACTCATTTCATGGGTTGACTTAGGCATAC
** * * ** * *
17719659 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAG-CGGAATCGACAGCA
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGTAGG-ATCGATAGCA
* * * * * * * * * * *
17719721 CTCAG-AGAGGGATCGAGTCGATCCTCGACTTACGCATTATGCCTTTTCGGCCAGCTCAGCGTCC
63 CGCAGAAGA-GGACCGAGTCGATCCCCGGCTTGCGCTTTATGCCTCTCCGGCCGGCTGAGCGCCC
17719785 GCA-ACTCATTTCATGGGTTGACTTAGGCATAC
127 GCACACTCATTTCATGGGTTGACTTAGGCATAC
* * * *
17719817 GGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGGGGGTTACGACAGTAGGATCGATAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGC
* * * * * *
17719882 AGAAGAGGACCGAATCGATCCCCGGCTTGCGCTTTCTGCCTCTCCGACTGGTTGAGCACCCGCAC
66 AGAAGAGGACCGAGTCGATCCCCGGCTTGCGCTTTATGCCTCTCCGGCCGGCTGAGCGCCCGCAC
* ** * *
17719947 GCTTGTTTCATGGGTTGCCTTAAGCATAC
131 ACTCATTTCATGGGTTGACTTAGGCATAC
* * * * *
17719976 AGAGTTGATTCCCAGTCTAAGATCAGATCAGACCGAAGGTTG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
17720018 TGGCAGCAGG
Statistics
Matches: 272, Mismatches: 75, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
157 8 0.03
158 153 0.56
159 107 0.39
160 4 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGC
AGAAGAGGACCGAGTCGATCCCCGGCTTGCGCTTTATGCCTCTCCGGCCGGCTGAGCGCCCGCAC
ACTCATTTCATGGGTTGACTTAGGCATAC
Found at i:17720741 original size:26 final size:26
Alignment explanation
Indices: 17720712--17720764 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17720702 GTTGACTTAG
*
17720712 GCATACGCAGTTTATT-CCATGTCTAA
1 GCATACGCAGTTCATTCCCA-GTCTAA
* *
17720738 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
17720764 G
1 G
17720765 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:17721019 original size:617 final size:610
Alignment explanation
Indices: 17719290--17721104 Score: 2043
Period size: 617 Copynumber: 2.9 Consensus size: 610
17719280 ACTTAGGCAT
* * *
17719290 ACGGAGTTCATCGCCAGTCTAAGCATATGGAGTTCATTCTAGTCTAAGATCAGACCAGA-CTGAG
1 ACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTAGTCTAAGATCAGACCGGATC-AAG
* * * * * *
17719354 GGTTGCAACAGAAAGTTCGACAGCACGCAGGGGGGATCGGGCTGATCGTCAGCTTACGCATTCTG
65 GGTTGCGATAGAAGGTTCGACAACACGTAAGGGGGATCGGGCTGATCGTCAGCTTACGCATTCTG
*
17719419 CCTCTCCGACCAGCTTAGCACCCACATGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
130 CCTCTCCGGCCAGCTTAGCACCCACATGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* *
17719484 TCCATGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
195 TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAG
* * * **
17719549 TAGGATCGATGGCACGAAGGGGGGCCCAGGCCTATCCCCGGATTGCATATTTTGCCTCTCCGGCC
260 TAGGATCGATAGCACGAAGGGGGGCCCAGGCCTAT-CCCGGCTTGCGTATTTTGCCTCTCCGATC
17719614 GGCTGAGGGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
324 GGCTGAGGGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * *
17719679 GCCCCAGCCAGACCGAGGGTTGTGGTAGCGGAATCGACAGCACTCAGAGAGGGATCGAGTCGATC
389 GCCCCAGCCAGACCGAGGGTTGTGGCAGCGG-ACCGACAGCACACAGAGAGGGATCGGGTCGATC
* *
17719744 CTCGACTTACGCATTATGCCTTTTCGGCCAGCTCAGCGTCCGCA-ACTCATTTCATGGGTTGACT
453 CTCGACTTACGCATTATGCCTTTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACT
* * *
17719808 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC----G--G-GGGTTACGACAGT
518 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGGTTACAACAGC
*
17719866 AGGATCGATAGCACGCAGAAGAGGACCG
583 AGGATCGACAGCACGCAGAAGAGGACCG
* * * * * ** *** * * * *
17719894 A---A--TCGATCCCC-GGCT-TGCGCTTTCTGCCTCTCCGACTGGT-TGAGCACCCGCACGCTT
1 ACGGAGTTC-ATCCCCAGTCTAAGC-ATAT-GGAGT-TCATTCTAGTCTAAG-ATCAG-AC-C--
** * * * * **
17719951 GTTTCATGGGTTGCCTTAAGCATACAGAGTTGATTCCCAGTCTAAGATCAGATCAGACCGAAGG-
57 GGATCAAGGGTTG-C----G-ATAGA-AG--G-TT--C-GAC-AACA-C-G-T-A-A--GGGGGA
* * * * * * * * *
17720015 TTGTGGCAGCA-GGACCGACTTACGCATTCTGCCACTCTGGCCAGCTTAGCACCCACACGTCCAT
101 TCG-GGCTG-ATCGTCAG-CTTACGCATTCTGCCTCTCCGGCCAGCTTAGCACCCACATGCCCAT
* * *
17720079 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCATACGAAGTTCATTCCCAGT
163 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGT
* * * * * *
17720144 CTAAGATCAGACTGGATCGAGGG-TAGCGGCAGTAGGATCAATAGAACGTAGGGGGGCCCAGGCC
228 CTAAGATCAGACCGGACCGAGGGTTA-CGACAGTAGGATCGATAGCACGAAGGGGGGCCCAGGCC
* * * * * *
17720208 TATCCCGGCTTGCGTATTCTGCCTTTCCGATCGACTGAGCGCTCGCACACCTATTTCGTGGGTTG
292 TATCCCGGCTTGCGTATTTTGCCTCTCCGATCGGCTGAGGGCCCGCACACCCATTTCGTGGGTTG
* *
17720273 GCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGACA
357 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCG-GA
* * *
17720338 CCGATAGCACACAGAGAGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTTTTCGGCCAGCT
421 CCGACAGCACACAGAGAGGGATCGGGTCGATCCTCGACTTACGCATTATGCCTTTTCGGCCAGCT
* * * * *
17720403 CAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATT
486 CAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
17720468 GGACCGGATCGAGGGTTGCGGTAGTAGTACCAACAGCAGGATCGACAGCACGCAG-GGGGGACCG
551 AGACCGGATCGAGGGTTGCGG--GT--TA-CAACAGCAGGATCGACAGCACGCAGAAGAGGACC-
17720532 G
610 G
* *
17720533 ACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCAGTCTAAGATCAGACCGGATCAAGC
1 ACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTAGTCTAAGATCAGACCGGATCAAGG
17720598 GTTGCGATAGAAGGTTCGACAACACGTAAGGGGGATCGGGCTGATCGTCAGCTTACGCATTCTGC
66 GTTGCGATAGAAGGTTCGACAACACGTAAGGGGGATCGGGCTGATCGTCAGCTTACGCATTCTGC
* * * * *
17720663 CTCTCCGGCCAGCTTAGCACCCACATGCCCGTTTCATGGGTTGACTTAGGCATACGCAGTTTATT
131 CTCTCCGGCCAGCTTAGCACCCACATGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
*
17720728 CCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGT
196 CCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGT
** * * * *
17720793 AGGATCGGCAGCACGCAGGGGGGCCCAAGCCTATCCTCGGCTTGTGCATTTTGCCTCTCCGATCG
261 AGGATCGATAGCACGAAGGGGGGCCCAGGCCTATCC-CGGCTTGCGTATTTTGCCTCTCCGATCG
* *
17720858 GCTGAGGGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
325 GCTGAGGGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* *
17720923 CCCTAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGAGAGGGATAGGGTCGATCC
390 CCCCAGCCAGACCGAGGGTTGTGGCAGC-GGACCGACAGCACACAGAGAGGGATCGGGTCGATCC
* * * ** * *
17720988 CCGACTTACGCATTATGCCTTTCCGGCCAGCTCAGTGCTTGTACGCTCATTTCATGGGTTGATTT
454 TCGACTTACGCATTATGCCTTTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTT
* * *
17721053 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
519 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCG
17721105 ATAGCAAGAT
Statistics
Matches: 978, Mismatches: 170, Indels: 113
0.78 0.13 0.09
Matches are distributed among these distances:
598 2 0.00
599 7 0.01
600 10 0.01
601 10 0.01
602 2 0.00
603 1 0.00
604 1 0.00
605 6 0.01
606 2 0.00
611 3 0.00
612 1 0.00
614 1 0.00
615 2 0.00
616 156 0.16
617 253 0.26
618 5 0.01
619 3 0.00
620 2 0.00
621 2 0.00
622 1 0.00
623 2 0.00
624 3 0.00
625 4 0.00
626 192 0.20
627 217 0.22
628 2 0.00
629 1 0.00
631 3 0.00
632 4 0.00
633 2 0.00
634 2 0.00
636 2 0.00
637 1 0.00
638 17 0.02
639 24 0.02
640 1 0.00
641 2 0.00
642 9 0.01
643 11 0.01
644 7 0.01
645 2 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (610 bp):
ACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTAGTCTAAGATCAGACCGGATCAAGG
GTTGCGATAGAAGGTTCGACAACACGTAAGGGGGATCGGGCTGATCGTCAGCTTACGCATTCTGC
CTCTCCGGCCAGCTTAGCACCCACATGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGT
AGGATCGATAGCACGAAGGGGGGCCCAGGCCTATCCCGGCTTGCGTATTTTGCCTCTCCGATCGG
CTGAGGGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGCCAGACCGAGGGTTGTGGCAGCGGACCGACAGCACACAGAGAGGGATCGGGTCGATCCTC
GACTTACGCATTATGCCTTTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGGTTACAACAGCAGG
ATCGACAGCACGCAGAAGAGGACCG
Found at i:17721435 original size:26 final size:26
Alignment explanation
Indices: 17721385--17721437 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17721375 GTTGACTTAG
*
17721385 GCATACGGAGTTCATCACCAGTCTAA
1 GCATACGGAGTTCATCACCAATCTAA
17721411 GCATACGGAGTTCATTC-CCAATCTAA
1 GCATACGGAGTTCA-TCACCAATCTAA
17721437 G
1 G
17721438 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAATCTAA
Found at i:17722292 original size:26 final size:26
Alignment explanation
Indices: 17722263--17722315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17722253 GTTGACTTAG
*
17722263 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
17722289 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
17722315 G
1 G
17722316 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:17722771 original size:26 final size:26
Alignment explanation
Indices: 17722721--17722773 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17722711 GTTGGCTTAG
* *
17722721 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
17722747 GCATACAGAGTTCATTGCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17722773 G
1 G
17722774 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17723600 original size:157 final size:155
Alignment explanation
Indices: 17723122--17723605 Score: 440
Period size: 159 Copynumber: 3.1 Consensus size: 155
17723112 TAAGCGTACA
* * * * * *
17723122 GAGTTTATTCCCAGTCTAAGATCGGACCTGATCGAGGGTTGCGATAGCAGGATCGATATCACACA
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCA
* * * * *
17723187 GTGGGTACTGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCAGCTGACTGAGTGCCGACACGT
66 G-GGGGACTGGGCCGATCCCC-GCTTACGCATTCTGCCTCTCC-GGTGGCTGAGTGCCGACAC-T
*
17723252 C-CGTTTCATGGGTTGGCTTAGGCATAG-G
127 CTCGTTTCGTGGGTTGGCTTAGGCAT-GCG
** ** * * * * * *
17723280 GAGTTCATT-CCATGTCTAAGCCCCAATCGGATAGAGGGTTGTGGTAGTAAGA-CTGGCAGCACG
1 GAGTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAGGATC-GACAGCACG
* ** * * *
17723343 CAGAGGGGGACCGGGCCGATCGTCGACTTACGCATTATGCCTCTCCTGTCGGCTTAGTGCTCGA-
64 C--AGGGGGACTGGGCCGATCCCCG-CTTACGCATTCTGCCTCTCCGGT-GGCTGAGTGC-CGAC
* * * *
17723407 ACGCTCGTTTCGTGGGTTGACTTAGGCATACA
124 ACTCTCGTTTCGTGGGTTGGCTTAGGCATGCG
* * *
17723439 GAGTTCATTCCCAGTCTAAGATAGGATCGGACCGAGGGTTGCGATCGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCA
* * * *
17723504 GGGGGACTGGGCCGGTCCCCAGC-TAGCGCATTCTGCATCTTCGGTAGGCTGAGTGCCCACACTC
66 GGGGGACTGGGCCGATCCCC-GCTTA-CGCATTCTGCCTCTCCGGT-GGCTGAGTGCCGACACTC
17723568 TCGTTTCGTGGGTTGGCTTAGGCATGCG
128 TCGTTTCGTGGGTTGGCTTAGGCATGCG
17723596 GAGTTCATTC
1 GAGTTCATTC
17723606 TATGTCTAAG
Statistics
Matches: 252, Mismatches: 60, Indels: 29
0.74 0.18 0.09
Matches are distributed among these distances:
156 4 0.02
157 84 0.33
158 46 0.18
159 109 0.43
160 9 0.04
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (155 bp):
GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCA
GGGGGACTGGGCCGATCCCCGCTTACGCATTCTGCCTCTCCGGTGGCTGAGTGCCGACACTCTCG
TTTCGTGGGTTGGCTTAGGCATGCG
Found at i:17723638 original size:26 final size:26
Alignment explanation
Indices: 17723589--17723641 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17723579 GTTGGCTTAG
* *
17723589 GCATGCGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17723615 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
17723641 G
1 G
17723642 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17723815 original size:26 final size:26
Alignment explanation
Indices: 17723785--17723837 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17723775 GTTGGCTTAG
17723785 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17723811 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17723837 G
1 G
17723838 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17724803 original size:273 final size:272
Alignment explanation
Indices: 17724308--17724828 Score: 643
Period size: 273 Copynumber: 1.9 Consensus size: 272
17724298 CGAACGTTTG
* * * *
17724308 TTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
1 TTTCACGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAACATCAGACCAAACTGAGGGTT
*** * * * * * * *
17724373 ACGGTAGCAGAATCGATAGCACACAAGGGGGACTGGGCCTGTCCCCGGCTTACGCATTCTGCCTC
66 ACAACAGCAGAATCAACAGCACACAAGGGGGACTGAGCCGGGCCACGGCTTACGCATTCTACCTC
* * *
17724438 TCCGATCAGCTGAGCGCCCAGAGGCTCGTTTCATGGGTTGGCTTAGGCACACGGAGTTCATTCCA
131 TCCGACCAGCTGAGCGCCCACA-GCTCGTTTCATGGGTTGGCTTAGGCACACGAAGTTCATTCCA
* ** * * *
17724503 TGTCTAAGCATATAGAGTTTGTTCCCAGTCTAAGATCGGATCGGACCGAGGGTAGCGGCAGTAGG
195 TGTATAAGCATATAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTAGCGGCAGTAGG
17724568 ACCAGCATGCTCA
260 ACCAGCATGCTCA
* * *
17724581 TTTCATGGGTTGACTTAGGCGTACAGAGTTCAATCCCAGTCTAACATCGGACCAAACTGAGGGTT
1 TTTCACGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAACATCAGACCAAACTGAGGGTT
* * * * **
17724646 ACAACCGTAGGATCAACAGCACAC-AGGAGGGA-TCGAGCCGGGCCATGGCTTGTGCATTCTACC
66 ACAACAGCAGAATCAACAGCACACAAGG-GGGACT-GAGCCGGGCCACGGCTTACGCATTCTACC
* * *
17724709 TCTCCGACCGGCTGAGCGCCTGCACA-CTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT
129 TCTCCGACCAGCTGAGCGCC--CACAGCTCGTTTCATGGGTTGGCTTAGGCACACGAAGTTCATT
* *
17724773 CCATGTATAAGCATATGGTGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT
192 CCATGTATAAGCATATAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT
17724829 TCCAACAGTA
Statistics
Matches: 207, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
272 4 0.02
273 200 0.97
275 3 0.01
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (272 bp):
TTTCACGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAACATCAGACCAAACTGAGGGTT
ACAACAGCAGAATCAACAGCACACAAGGGGGACTGAGCCGGGCCACGGCTTACGCATTCTACCTC
TCCGACCAGCTGAGCGCCCACAGCTCGTTTCATGGGTTGGCTTAGGCACACGAAGTTCATTCCAT
GTATAAGCATATAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTAGCGGCAGTAGGA
CCAGCATGCTCA
Found at i:17724930 original size:185 final size:184
Alignment explanation
Indices: 17724608--17724969 Score: 483
Period size: 185 Copynumber: 2.0 Consensus size: 184
17724598 GGCGTACAGA
* * *
17724608 GTTCAATCCCAGTCTAACATCGGACCAAACTGAGGGTTACAACCGTAGGATCAACAGCACACAGG
1 GTTCAATCCCAGTCTAACATCGAACCAAACCGAGGGTTACAACAGTAGGATCAACAGCACACAGG
* * * * * *
17724673 AGGGATCGAGCCGGGCCATGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGCCTGCACACTC
66 AGGGACCGAGCCGAGCCACGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACACTC
*
17724738 GTTTCGTGGGTTGGCTTAGGCATAC-GAAGTTCATTCCATGTATAAGCATATGGT
131 ATTTCGTGGGTTGGCTTAGGCATACAGAA-TTCATTCCATGTATAAGCATATGGT
* * * * ** **
17724792 GTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTCCAACAGTAGGATCGGCAGCATGCAGG
1 GTTCAATCCCAGTCTAACATCGAACCAAACCGAGGGTTACAACAGTAGGATCAACAGCACACA-G
* * * **
17724857 GAGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGTCTCTCCGACCGGCTGAGCACCCGCACACT
65 GAGGGACCGAGCCGAGCCACGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACACT
*
17724922 CATTTCGTGGGTTGGCTTAGGCATACAGAATTCATTCCATGTCTAAGC
130 CATTTCGTGGGTTGGCTTAGGCATACAGAATTCATTCCATGTATAAGC
17724970 CCCAGTCAGA
Statistics
Matches: 152, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
184 52 0.34
185 97 0.64
186 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (184 bp):
GTTCAATCCCAGTCTAACATCGAACCAAACCGAGGGTTACAACAGTAGGATCAACAGCACACAGG
AGGGACCGAGCCGAGCCACGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACACTC
ATTTCGTGGGTTGGCTTAGGCATACAGAATTCATTCCATGTATAAGCATATGGT
Found at i:17725155 original size:26 final size:26
Alignment explanation
Indices: 17725126--17725178 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17725116 GTTGACTTAG
17725126 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17725152 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17725178 G
1 G
17725179 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17725468 original size:159 final size:158
Alignment explanation
Indices: 17725239--17725640 Score: 422
Period size: 159 Copynumber: 2.5 Consensus size: 158
17725229 GATCGGGTCG
* * * * * *
17725239 ATCCCCGACTTGCGCATTCTGCCTCTCCGA-CTGGCTGAGCGCCTGCACACCCGTTTCATGGTTT
1 ATCCCCGGCTTGTGCATTCTGCCTCTCCGATC-GGCTGAGCGCCTGCACGCTCGTTTCGTGGCTT
* * * *
17725303 GGCTTAGGCATAAGGAGTTCATTCA-ATGTCTAAGCCCCAG-CCAGATCGAGGGTTATGGCAGCA
65 GACTTAGGCATAAGGAGTTCATTCATA-GTCTAAG-ACCAGACCAGACCGAGGGTTACGGCAGCA
**
17725366 GGACCGACAGCACACAGAGGGGGATTGGGCCA
128 GGACCGACAGCACACAG-GGGGGACGGGGCCA
* * * * *
17725398 ATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCTGAACGCTGGTTTTGTGGCTTG
1 ATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCGTGGCTTG
* * * * * *
17725463 ACTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGA
66 ACTTAGGCATAAGGAGTTCATTCATAGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGGA
* * *
17725528 TCGACAGCATACAGGGGGGACGGGGCCG
131 CCGACAGCACACAGGGGGGACGGGGCCA
* * *
17725556 ATCCCCGGCTTGCT-CATTCTGCCTCTCCG-TCCGACTGAGCACC-GCACGCTCGTTTCGTGGGT
1 ATCCCCGGCTTG-TGCATTCTGCCTCTCCGAT-CGGCTGAGCGCCTGCACGCTCGTTTCGTGGCT
*
17725618 TGACTTAAGCATACA-GAGTTCAT
64 TGACTTAGGCATA-AGGAGTTCAT
17725641 CCTCAGTCTA
Statistics
Matches: 201, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
157 36 0.18
158 49 0.24
159 114 0.57
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
ATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCGTGGCTTG
ACTTAGGCATAAGGAGTTCATTCATAGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGGA
CCGACAGCACACAGGGGGGACGGGGCCA
Found at i:17725662 original size:26 final size:26
Alignment explanation
Indices: 17725623--17725674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17725613 TGGGTTGACT
17725623 TAAGCATACAGAGTTCA-TCCTCAGTC
1 TAAGCATACAGAGTTCATTCC-CAGTC
*
17725649 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17725675 AAAGATCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17725904 original size:183 final size:183
Alignment explanation
Indices: 17725507--17726007 Score: 526
Period size: 183 Copynumber: 2.7 Consensus size: 183
17725497 TCAGACCGGA
* ** ** *
17725507 CCGAGGGTTGCGGTAGCAGGATCGACAGCATACAGGGGGGACGGGGCCGATCCCCGGCTTGCTCA
1 CCGAAGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACTCGGCCGATCCCCGGCTTGCGCA
* * *
17725572 TTCTGCCTCTCCGTCCGACTGAGC-ACCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAG
66 TTCTGCCTCTCCGACCGACTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
17725636 TTCATCCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGATTGG
131 TTCATCCTCAGTCAAAGCATACGAAGTTCATTCCCAATCAAAGATCGGATGGG
* * * * * * * *
17725689 ACTAAGGGTTACGGTAGTAGGA-CTAGCAGCACGTAGGGGGGACTCAGCCGAT-CCCTGCTTGCG
1 CCGAA-GGTTGCGGTAGCAGGATCGA-CAGCACGCAGGGGGGACTCGGCCGATCCCCGGCTTGCG
* *
17725752 CATTCTGCCTCTCCGACCGACTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
64 CATTCTGCCTCTCCGACCGACTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* ** * *
17725817 AGTTCATCCTCAGTCAAAGCATATGAAGTTTTTTCCCAATCTAATATCGGATCGGG
129 AGTTCATCCTCAGTCAAAGCATACGAAGTTCATTCCCAATCAAAGATCGGAT-GGG
** * * * * *
17725873 CCGAAGGTTGCGACAGCAGTATCGACAGCACGCAGAGGGGA-TCGGGCTGTTCCCCGGCTTACGC
1 CCGAAGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACTC-GGCCGATCCCCGGCTTGCGC
** * * * * ** *
17725937 ATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCCCGTTTTATGGGTT-AGCTTAGGCATAGGG
65 ATTCTGCCTCTCCGACCGACTGAGCGACCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGG
17726001 AGTTCAT
129 AGTTCAT
17726008 TCCATGTCTA
Statistics
Matches: 259, Mismatches: 52, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
182 40 0.15
183 142 0.55
184 77 0.30
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (183 bp):
CCGAAGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACTCGGCCGATCCCCGGCTTGCGCA
TTCTGCCTCTCCGACCGACTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATCCTCAGTCAAAGCATACGAAGTTCATTCCCAATCAAAGATCGGATGGG
Found at i:17726362 original size:26 final size:26
Alignment explanation
Indices: 17726312--17726363 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17726302 TGGCTTAGGC
*
17726312 ATACGGAGTTCATTCCATGTGTAAGA
1 ATACGGAGTTCATTCCATGTCTAAGA
17726338 ATACGGAGTTCATTCTCA-GTCTAAGA
1 ATACGGAGTTCATTC-CATGTCTAAGA
17726364 CCGAGGGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGA
Found at i:17727140 original size:26 final size:26
Alignment explanation
Indices: 17727110--17727165 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
17727100 TGGGTTGGCT
*
17727110 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTAATTCCCA-GTC
17727136 TAAGCATACGGAGTTAATTCCCAGTC
1 TAAGCATACGGAGTTAATTCCCAGTC
17727162 TAAG
1 TAAG
17727166 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTAATTCCCAGTC
Found at i:17727664 original size:26 final size:26
Alignment explanation
Indices: 17727628--17727678 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17727618 TGGCTTAGGC
17727628 ATACAGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
*
17727654 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17727679 ATCGGATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:17727676 original size:513 final size:513
Alignment explanation
Indices: 17726738--17727685 Score: 1294
Period size: 513 Copynumber: 1.8 Consensus size: 513
17726728 CTCGACTTGC
* * *
17726738 GCATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCACGTTTCGCGGGTTGGCTTAGTCATAGG
1 GCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCACGTTTCACGGGTTGGCTTAGGCATAGG
* * * * * *
17726803 GAGTTCATTCCATGTCAAAGCCCCAGTCGGACCGATGGTTGTGGTAGCAAGATAGACAGCACGCA
66 GAGTTCATTCAATGTCAAAGCCCCAGCCGGACCGAGGGTTATGGCAGCAAGACAGACAGCACGCA
* * * * * *
17726868 GAGGGGTACCGGGCTGATCCTGGCTTGCGCATTAGGTCTCTCCGATCGGTTCCGTGCCTAAACGC
131 GAGGGGGACCGGGCTGATCCTGGCTTGCGCATTAGGCCTCTCCGATCGGCTCAGTACCCAAACGC
* * * *
17726933 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGG
196 TCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCAGACCGGACCAAGG
* * * * * ** *
17726998 GTTGTGACAACAGGATTGATAGCATGTAGAAAGGGATCGGGTCGGTCCCCGGCTTGGGCATTCTA
261 GTTGCGACAACAGGATTGACAGCACGTAGAAAGGGATCGAGTCGATCCCCAACTTGCGCATTCTA
* * *
17727063 CCTCTCAGGTCGTCTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCAT
326 CCTCTCAGATCGTCTGAGCACCCGCACACTCATTTCATAGGTTGGCTTAAGCATACAGAGTTCAT
17727128 TCCATGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGTAG
391 TCCATGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGTAG
17727193 TAGGACCAGTAGCAGGATCGGCAGTACGCAGGGGGGACGGGGCTGATCCCTGGCTTAT
456 TAGGACCAGTAGCAGGATCGGCAGTACGCAGGGGGGACGGGGCTGATCCCTGGCTTAT
* * * * *
17727251 GCATTCTGCCTCTTCGACCGGTTTAGCACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
1 GCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCACGTTTCACGGGTTGGCTTAGGCATAGG
* * * * *
17727316 GAGTTCATTCAATGTCTAAGCCCCAGCCGGACTGAGGGTTATGGCAGCGAA-ACCGATAGTACGC
66 GAGTTCATTCAATGTCAAAGCCCCAGCCGGACCGAGGGTTATGGCAGC-AAGACAGACAGCACGC
* * *
17727380 AGAGGGGGACCTGG-TCGATCACTGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTACCCGAA
130 AGAGGGGGACCGGGCT-GATC-CTGGCTTGCGCATTAGGCCTCTCCGATCGGCTCAGTACCCAAA
* * * *
17727444 CGCTCATTTCATGGGTTGACTTAGGCTTACGGAGTTCA-TTCCTAGTTTAAGATCAGACCGGATC
193 CGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTTCC-AGTCTAAGATCAGACCGGACC
** *
17727508 AAGGGTTGCGACAGTAGGATTGACAGCACGTAG-AGGGGATCGAGTCGATCCCCAACTTGCGCAT
257 AAGGGTTGCGACAACAGGATTGACAGCACGTAGAAAGGGATCGAGTCGATCCCCAACTTGCGCAT
* * * * * *
17727572 TCTGCCTCTCCGATCGGT-TGAGCACCCGCACGCTCGTTTCTTAGGTTGGCTTAGGCATACAGAG
322 TCTACCTCTCAGATC-GTCTGAGCACCCGCACACTCATTTCATAGGTTGGCTTAAGCATACAGAG
* *
17727636 TTCATTCCATGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCGGAT
386 TTCATTCCATGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGAT
17727686 TAGACCGAGG
Statistics
Matches: 372, Mismatches: 58, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
512 1 0.00
513 252 0.68
514 119 0.32
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (513 bp):
GCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCACGTTTCACGGGTTGGCTTAGGCATAGG
GAGTTCATTCAATGTCAAAGCCCCAGCCGGACCGAGGGTTATGGCAGCAAGACAGACAGCACGCA
GAGGGGGACCGGGCTGATCCTGGCTTGCGCATTAGGCCTCTCCGATCGGCTCAGTACCCAAACGC
TCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCAGACCGGACCAAGG
GTTGCGACAACAGGATTGACAGCACGTAGAAAGGGATCGAGTCGATCCCCAACTTGCGCATTCTA
CCTCTCAGATCGTCTGAGCACCCGCACACTCATTTCATAGGTTGGCTTAAGCATACAGAGTTCAT
TCCATGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGTAG
TAGGACCAGTAGCAGGATCGGCAGTACGCAGGGGGGACGGGGCTGATCCCTGGCTTAT
Found at i:17727872 original size:26 final size:26
Alignment explanation
Indices: 17727835--17727887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17727825 GTTAACTTAG
17727835 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17727861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17727887 G
1 G
17727888 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17728050 original size:197 final size:197
Alignment explanation
Indices: 17727752--17728174 Score: 546
Period size: 197 Copynumber: 2.1 Consensus size: 197
17727742 ACCAGACCAA
* * * * * * *
17727752 TCCCCAGCTTGCGTATTCTACCTCTCCAATCGGCCTTTCCGGCCACCTAAGCACCCGCACGCTCC
1 TCCCCGGCTTGCGTATTCTGCCTCTCCGACCGGCCTCTCCGACCACCTAAGCACCCGCACGCTCA
* *
17727817 TTTCGTCGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
66 TTTCGTCGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCAG
* * * **
17727882 TCTAAGATCGGACCGGATCGAGGGTTTCCACAGTAGGACCAACAGCACGTAGGGGGGA-CTGGGT
131 TCTAAGATCGGACCGGACCGAGGGCTGCCACAACAGGACCAACAGCACGTAGGGGGGATC-GGGT
17727946 CGA-
195 C-AT
* * * *
17727949 TCCTCGGCTTGCGTATTCTGCCTCTCCGACCGGCCTCTCCGACTGA-TTAAGCCCCCGCACGCTC
1 TCCCCGGCTTGCGTATTCTGCCTCTCCGACCGGCCTCTCCGAC-CACCTAAGCACCCGCACGCTC
* * *
17728013 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCA
65 ATTTCGTCGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCA
* * * * * *
17728078 GTCTAATATTGGACCGGACCGAGGGCTGCGACAACAGGATCGACAGCACGTATGGGGGATCGGGT
130 GTCTAAGATCGGACCGGACCGAGGGCTGCCACAACAGGACCAACAGCACGTAGGGGGGATCGGGT
17728143 CAT
195 CAT
*
17728146 TCCCCGGCTTGCGCATTCTGCCTCTCCGA
1 TCCCCGGCTTGCGTATTCTGCCTCTCCGA
17728175 TCGACTGAGT
Statistics
Matches: 194, Mismatches: 29, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
196 1 0.01
197 191 0.98
198 2 0.01
ACGTcount: A:0.20, C:0.32, G:0.25, T:0.23
Consensus pattern (197 bp):
TCCCCGGCTTGCGTATTCTGCCTCTCCGACCGGCCTCTCCGACCACCTAAGCACCCGCACGCTCA
TTTCGTCGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCAG
TCTAAGATCGGACCGGACCGAGGGCTGCCACAACAGGACCAACAGCACGTAGGGGGGATCGGGTC
AT
Found at i:17728069 original size:26 final size:26
Alignment explanation
Indices: 17728032--17728083 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17728022 GTTGACTTAG
*
17728032 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17728058 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17728084 TATTGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17728512 original size:158 final size:157
Alignment explanation
Indices: 17728058--17728558 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 157
17728048 CCCAGTCTAA
* * * * * * *
17728058 GCATACGAAGTTCATCCCCA-GTCTAATATTGGACCGGACCGAGGGCTGCGACAACAGGATCGAC
1 GCATACGGAGTTCAT-TCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACAGGATCGAC
* * * * *
17728122 AGCACGTATGGGGGATCGGGTCATTCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGC
65 AGCACGCAGGGGGGATCGGGTCA-TCCCCGACTTGCGCATTATGCCTCTCCGATCGACTGAGCGC
* * *
17728187 CCGCATGCCCATTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * *
17728216 GCATAGGGAGTTCATTCCATGTCTAAG--CCTAGCCGGACCGAGGGTTGTGGCAGCGGGA-CGGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAACAGGATC-GA
* * * * *
17728278 CAACACGCAGAGGGGGACCGGGCTAATCCCCGACTTGCGCATTATGCCTCTTCGATCGACTCAGC
64 CAGCACGCAG-GGGGGATCGGG-TCATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTGAGC
* *
17728343 TCCCGCACGCTCGTTTCATGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
17728374 GCGTACGGAGTTAATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGTGGCAACAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACAGGATCGAC
* * * *
17728438 AGCACGCAGGGGGGATCGGGTCGATCCCCGACTTACGCATTTTGCCTCTCC-AGCCGATTGAGCG
65 AGCACGCAGGGGGGATCGGGTC-ATCCCCGACTTGCGCATTATGCCTCTCCGA-TCGACTGAGCG
** * * *
17728502 CTTGCGCGCTCGATTCATGGGTTGGCTTCG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
17728532 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17728559 CATACGGAGT
Statistics
Matches: 274, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 37 0.14
158 196 0.72
159 36 0.13
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACAGGATCGACA
GCACGCAGGGGGGATCGGGTCATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17728562 original size:26 final size:26
Alignment explanation
Indices: 17728532--17728584 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17728522 GTTGGCTTCG
17728532 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17728558 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17728584 G
1 G
17728585 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17728765 original size:26 final size:26
Alignment explanation
Indices: 17728729--17728781 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17728719 GTTGACTTAG
*
17728729 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACAGAGTTCACCCCCAGTCTAA
**
17728755 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACCCCCAGTCTAA
17728781 G
1 G
17728782 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACCCCCAGTCTAA
Found at i:17730293 original size:158 final size:158
Alignment explanation
Indices: 17729718--17730282 Score: 652
Period size: 158 Copynumber: 3.6 Consensus size: 158
17729708 TACCACCCGT
* * * * * *
17729718 TCGATCCTCGGCTTGCGCATCCTGACTCTCTGGTCGGCTGAGCGTCCGCACGCTCGTTCCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
17729783 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCA
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
*
17729848 GGATCGATAGCACGCAGGGGGGACCAGG
131 GGATCGACAGCACGCAGGGGGGACCAGG
* * * * * *
17729876 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTTGTGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * ** * *
17729941 TTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCTAGCCGGACCGAGGGTTGTGGCAA
66 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAG
* *
17730004 C-GGAGCTGGCAGCACGCAGAGGGGGACCAGG
129 CAGGATC-GACAGCACGCAG-GGGGGACCAGG
* * * * * * * * *
17730035 TTGATCCTCGGCTTCCGTATTATGCCTCT-CTGACTGGCTCAGCGCCCGCACGCTCGTTTTGTGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *** * *
17730099 GTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGATTAGACCGATGGTTGGGGCAGC
65 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* *
17730164 AGGATCGACAGCACGCAGGCGGGACCGGG
130 AGGATCGACAGCACGCAGGGGGGACCAGG
* *
17730193 TCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
17730258 TTGGCTTAGGCATACGGAGTTCATT
66 TTGACTTAGGCATACGGAGTTCATT
17730283 GCATGTCTAA
Statistics
Matches: 332, Mismatches: 66, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
157 9 0.03
158 195 0.59
159 119 0.36
160 9 0.03
ACGTcount: A:0.16, C:0.29, G:0.32, T:0.23
Consensus pattern (158 bp):
TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
GGATCGACAGCACGCAGGGGGGACCAGG
Found at i:17730985 original size:26 final size:26
Alignment explanation
Indices: 17730956--17731008 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17730946 GTTGACTTAG
*
17730956 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCAAGTCTAA
* *
17730982 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAATTCATCCCAAGTCTAA
17731008 G
1 G
17731009 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCAAGTCTAA
Found at i:17731031 original size:343 final size:341
Alignment explanation
Indices: 17730596--17731249 Score: 898
Period size: 343 Copynumber: 1.9 Consensus size: 341
17730586 CACACGCTGA
* * *
17730596 TTTCATGGGTTGACTTGGCATGCGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCTAT
1 TTTCATGGGTTGACTTGGCATACGGAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAAT
* * * * * ** * *
17730661 CTAAGATCACACCGGACCGAGGGTTGCGGCCATAGGATTGGTAGCACGCAGGGGGGATCGGGCCG
66 CTAAGATCACACCGGACCGACGGTTGCGACAACAGGATCGACAGCACACAGGGGGGACCGGGCCG
* * * * **
17730726 ATCCCTAGCATGCCCATTCTGCCTCTCTGA-CCAGCTAAGCGCCCGTGTGCCCATTTCGTGGGTT
131 ATCCCTAGCATACCCATTATGCCTCTC-CATCCAGCTAAGCACCCGCATGCCCATTTCGTGGGTT
17730790 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGG
195 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGG
* *
17730855 ATCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTTCGGCCAGC
260 ATCGACAGCACACAG-GGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTTCGGCCAGC
17730920 TCAGCGCCCGCATGCTCG
324 TCAGCGCCCGCATGCTCG
* *
17730938 TTTCGTGGGTTGACTTAGGCATACGGAATTCATCCCCAGTCTAAGCATACGGAGTTCATT-CCAA
1 TTTCATGGGTTGACTT-GGCATACGGAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAA
* * * **
17731002 GTCTAAGATCAGACCGGACTGACGGTTGCGACAACAGGATCGACAGTACATGGGGGGGACCGGGC
65 -TCTAAGATCACACCGGACCGACGGTTGCGACAACAGGATCGACAGCACACAGGGGGGACCGGGC
* ** * * * * *
17731067 TGATCCCTAGGTTACGCATTATGCCTCTCCATCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGT
129 CGATCCCTAGCATACCCATTATGCCTCTCCATCCAGCTAAGCACCCGCATGCCCATTTCGTGGGT
*
17731132 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGTGG
194 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGG
* * * *
17731197 GATCGGCAGCACACAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCC
259 GATCGACAGCACACAGGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCC
17731250 AGAGTTCTGC
Statistics
Matches: 269, Mismatches: 40, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
342 52 0.19
343 217 0.81
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (341 bp):
TTTCATGGGTTGACTTGGCATACGGAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAAT
CTAAGATCACACCGGACCGACGGTTGCGACAACAGGATCGACAGCACACAGGGGGGACCGGGCCG
ATCCCTAGCATACCCATTATGCCTCTCCATCCAGCTAAGCACCCGCATGCCCATTTCGTGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGA
TCGACAGCACACAGGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTTCGGCCAGCTC
AGCGCCCGCATGCTCG
Found at i:17731676 original size:26 final size:26
Alignment explanation
Indices: 17731626--17731678 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17731616 GTTGGCTTAG
*
17731626 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17731652 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17731678 G
1 G
17731679 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17732676 original size:159 final size:160
Alignment explanation
Indices: 17732373--17733194 Score: 676
Period size: 159 Copynumber: 5.2 Consensus size: 160
17732363 CCCAGTCTAA
* * * ** * * * * *
17732373 GCATATGGAGTTCATTCCCA-GTCCAAG-ATCAGACTAGACCGAAGGTGGCGACAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
17732436 CAGCACGTAG-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGC
65 CAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGGCTGAGC
* * *
17732500 ACCCGCACACCCGTTTCGTGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * *
17732531 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
17732595 AGCATGCAGAGAGGGACCGGGTCGGTCCCCGACTTACGCATTATGCCTCTCCGGCCAGCTCAGCG
66 AGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGGCTGAGCG
* *
17732660 CCCGCACGCTCATTTCGTGGGTTGACTTAG
131 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
17732690 GCATACGAAGTTCATTTCCA-GTCTAAG-ATCGGACCGGACCAAGGGTTGCGACAGCAGGATTGA
1 GCATACGGAGTTCA-TTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * ** * * * *
17732753 CAGCATGCAG-GGGGGACCAGACCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGC
65 CAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGGCTGAGC
* * * * *
17732817 ACCCGTACACCCATTTCGTGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * * * *
17732848 GCATAGGGAGTTCATTCTATGTCTAAGCCCCAG-TCAGACCGATGGTTGTGGTAACGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** ** * * *
17732912 AGCACGCAGAGGGGGATCGGGTCGATCCTC-AGCTTGTGCATTATGCCTCTCCGATCGACTCAGT
66 AGCACGCAGAGGGGGACCGGGTCGATCCCCGA-CTTACGCATTATGCCTCTCCGGCCGGCTGAGC
* * * *
17732976 GCCTGCACGCTTGTTTCATGGGTTGACTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
17733007 GCATACGGAGTTAATTCC-TAGTCTAAG-ATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * ** * * * * * * **
17733070 TAGCACACAGGGGGGGACTGGGTCGATCCTTGACTTACGCATTTTACCTTTTCGACCGGTTGAAA
65 CAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGGCTGAGC
*
17733135 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17733166 GCATACGGAGATCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
17733195 TACGGAGTTC
Statistics
Matches: 514, Mismatches: 136, Indels: 26
0.76 0.20 0.04
Matches are distributed among these distances:
157 7 0.01
158 171 0.33
159 328 0.64
160 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17732956 original size:317 final size:317
Alignment explanation
Indices: 17732381--17733193 Score: 927
Period size: 317 Copynumber: 2.6 Consensus size: 317
17732371 AAGCATATGG
* * * ** * * * *
17732381 AGTTCATTCCCAGTCCAAGATCAGACTAGACCGAA-GGTGGCGACAGTAGGATCGGCAGCACGTA
1 AGTTCATTTCCAGTCTAAGATCGGACCGGACC-AAGGGTTGCGACAGCAGGATCGACAGCACGCA
* ** * *
17732445 GGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACAC
65 GGGGGGACCAGACCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACAC
* **
17732510 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGG
130 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGG
* * * *
17732575 GTTGTGGCAGCGGGATCGACAGCATGCAGAGAGGGACCGGGTCGGTCCCCGACTTACGCATTATG
195 GTTGTGGCAACGGGATCGACAGCACGCAGAGAGGGACCGGGTCGATCCCAGACTTACGCATTATG
* *
17732640 CCTCTCCGGCC-AGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA
260 CCTCTCCGACCGA-CTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
* *
17732698 AGTTCATTTCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGATTGACAGCATGCAG
1 AGTTCATTTCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAG
* *
17732763 GGGGGACCAGACCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCACCCGTACACC
66 GGGGGACCAGACCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACACC
* *
17732828 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGTCAGACCGATGG
131 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGG
* * * * **
17732893 TTGTGGTAACGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCAG-CTTGTGCATTATG
196 TTGTGGCAACGGGATCGACAGCACGCAGAGAGGGACCGGGTCGATCC-CAGACTTACGCATTATG
* * * ** *
17732957 CCTCTCCGATCGACTCAGTGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGG
260 CCTCTCCGACCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
* * ** * *
17733015 AGTT-AATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACACA
1 AGTTCATTTCC-AGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCA
** ** ** * * * * * * *
17733079 GGGGGGGACTGGGTCGATCCTTGACTTACGCATTTTACCT-TTTCGACCGGTTGA-AAGCCCGCA
65 -GGGGGGACCAGACCGATCCCCGGCTTACGCATTCTGCCTCTCT-GGCCGGCTGAGCA-CCCGCA
* * * * * *
17733142 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGC
127 CACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17733194 ATACGGAGTT
Statistics
Matches: 418, Mismatches: 71, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
316 7 0.02
317 321 0.77
318 90 0.22
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
AGTTCATTTCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAG
GGGGGACCAGACCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACACC
CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGG
TTGTGGCAACGGGATCGACAGCACGCAGAGAGGGACCGGGTCGATCCCAGACTTACGCATTATGC
CTCTCCGACCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
Found at i:17733195 original size:26 final size:26
Alignment explanation
Indices: 17733166--17733218 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17733156 GTTGGCTTAG
17733166 GCATACGGAGATCATT-CCATGTCTAA
1 GCATACGGAGATCATTCCCA-GTCTAA
*
17733192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
17733218 G
1 G
17733219 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:17733978 original size:26 final size:26
Alignment explanation
Indices: 17733928--17733980 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17733918 GTTGACTTAG
*
17733928 GCATACGGAGTTCATCCCCGATCTAA
1 GCATACGGAGTTCATCCCAGATCTAA
17733954 GCATACGGAGTTCATTCCCAG-TCTAA
1 GCATACGGAGTTCA-TCCCAGATCTAA
17733980 G
1 G
17733981 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAGATCTAA
Found at i:17734302 original size:26 final size:26
Alignment explanation
Indices: 17734272--17734324 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17734262 TTTAGCTTAG
*
17734272 GCATACGAAGTTC-ATTCCATGTCTAA
1 GCATACGAAGTTCAATCCCA-GTCTAA
*
17734298 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
17734324 G
1 G
17734325 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:17735021 original size:26 final size:26
Alignment explanation
Indices: 17734992--17735044 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17734982 GTTAACTTAG
17734992 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
17735018 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17735044 G
1 G
17735045 ATTGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17735326 original size:159 final size:157
Alignment explanation
Indices: 17735126--17735520 Score: 467
Period size: 159 Copynumber: 2.5 Consensus size: 157
17735116 GCACGTTCTA
* * * * * * * *
17735126 CCTCTCTGATC-GACTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 CCTCTCCGATCAG-CTGAGCGCCCCTACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
*
17735190 TTCCAGGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGG
65 TTCCA-GTCTAAGCACCAGACCAGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGC--AGGGG
17735254 GATCGAGCCGATCCCCAGCTTGTGCATTATG
127 GATCGAGCCGATCCCCAGCTTGTGCATTATG
* * *
17735285 CCTCTCCGGTCGGCTGAGTGCCCGC-ACGA-TCATTTCATGGGTTGACTTAGGCATACGGAGTTC
1 CCTCTCCGATCAGCTGAGCGCCC-CTAC-ACTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
17735348 ATTCCCAATATAA-CATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGG
64 ATT-CCAGTCTAAGCACCAGACCAGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGGGGG
* * * * * *
17735412 ATCGGGTCGGTCTCCGGCTTGTGCATTCTG
128 ATCGAGCCGATCCCCAGCTTGTGCATTATG
* *
17735442 CCTCTCCGATCAGCTGAGCGCCCCTACACTCATTTCATAGGTTGCCTTAGGCATACGGAGTTCAT
1 CCTCTCCGATCAGCTGAGCGCCCCTACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
17735507 TCCATGTCTAAGCA
66 TCCA-GTCTAAGCA
17735521 TACGGAGTTC
Statistics
Matches: 199, Mismatches: 28, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
156 5 0.03
157 91 0.46
158 6 0.03
159 93 0.47
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
CCTCTCCGATCAGCTGAGCGCCCCTACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCAGTCTAAGCACCAGACCAGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGGGGGATC
GAGCCGATCCCCAGCTTGTGCATTATG
Found at i:17735542 original size:26 final size:26
Alignment explanation
Indices: 17735492--17735544 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17735482 GTTGCCTTAG
**
17735492 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
*
17735518 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCACATCTAA
17735544 G
1 G
17735545 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:17735723 original size:26 final size:26
Alignment explanation
Indices: 17735687--17735739 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17735677 GTTGACTTAG
17735687 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17735713 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17735739 G
1 G
17735740 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17735740 original size:195 final size:195
Alignment explanation
Indices: 17735387--17735743 Score: 463
Period size: 195 Copynumber: 1.8 Consensus size: 195
17735377 GGGTTGTGGT
* * * * *
17735387 AGCAGGATCGACAGCACGCAGGGGGATCGGGTCGGTCTCCGGCTTGTGCATTCTGCCTCTCCGAT
1 AGCAGGATCGACAGCACGCAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC
* * *
17735452 CAGCTGAGCGCCCCTACACTCATTTCATAGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CAGCTAAGCGCCCCTACACTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTA
17735517 AGCATACGGAGTTCATTCCCCATCTAAGATCAGACCGGACCAAGGCTTACAGTAGCAAGACCAGC
131 AGCATACGGAGTTCATTCCCCATCTAAGATCAGACCGGACCAAGGCTTACAGTAGCAAGACCAGC
* * *
17735582 AGCAGGATCGATAGCACGCAGGAGGGA-CTGGGTCGATCCCCAGCTTGCGTATTCTGCCTCTTCG
1 AGCAGGATCGACAGCACGCAGG-GGGATC-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCG
* * ** * *
17735646 ACCAG-TAAGCGCCTGC-ACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
64 ACCAGCTAAGCGCC-CCTACACTCATTTCATAGGTTGACTTAGGCATACGGAGTTCAT-CCCATG
* *
17735708 TCTAAGCATATGGAGTTTATT-CCCAGTCTAAGATCA
127 TCTAAGCATACGGAGTTCATTCCCCA-TCTAAGATCA
17735744 AACTGGACTG
Statistics
Matches: 138, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
194 4 0.03
195 93 0.67
196 41 0.30
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (195 bp):
AGCAGGATCGACAGCACGCAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC
CAGCTAAGCGCCCCTACACTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTA
AGCATACGGAGTTCATTCCCCATCTAAGATCAGACCGGACCAAGGCTTACAGTAGCAAGACCAGC
Found at i:17736082 original size:26 final size:26
Alignment explanation
Indices: 17736030--17736082 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17736020 GTTGGCTTAG
*
17736030 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
*
17736056 GCATATAGAGTTCATTCCCA-GTATAA
1 GCATACAGAGTTCATT-CCATGTATAA
17736082 G
1 G
17736083 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:17736738 original size:26 final size:26
Alignment explanation
Indices: 17736709--17736761 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17736699 GTTAACTTAG
17736709 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
17736735 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17736761 G
1 G
17736762 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17737406 original size:195 final size:196
Alignment explanation
Indices: 17737071--17737428 Score: 508
Period size: 195 Copynumber: 1.8 Consensus size: 196
17737061 GGGTTGCGGT
* * * * *
17737071 AGCAGGATCGACAGCACGCAGGGGGGATCAGGACGGTCCCCGGTTTGTGCATTCTACCTCTCCGA
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGACGATCCCCAGCTTATGCATTCTACCTCTCCGA
* * *
17737136 TCGGCTGAGCGCCCAGACGCTCGTTTCATGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCT
66 TCGGCTAAGCGCCCAGACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCT
*
17737201 AAGCATATGGAGTTCATTCCCCA-TCTAAGATCAGACAGGACCAAGGCTTACGGTAGCAAGACCA
131 AAGAATATGGAGTTCATT-CCCAGTCTAAGATCAGACAGGACCAAGGCTTACGGTAGCAAGACCA
17737265 GC
195 GC
* * * * * *
17737267 AGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTATGTATTTTGCCTCTTCGA
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGACGATCCCCAGCTTATGCATTCTACCTCTCCGA
*
17737332 TCGG-TAAGCGCCC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GT
66 TCGGCTAAGCGCCCAG-ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGT
*
17737394 CTAAGAATATGGAGTTTATTCCCAGTCTAAGATCA
129 CTAAGAATATGGAGTTCATTCCCAGTCTAAGATCA
17737429 AACCAGGTCG
Statistics
Matches: 142, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
194 5 0.04
195 76 0.54
196 61 0.43
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (196 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCAGGACGATCCCCAGCTTATGCATTCTACCTCTCCGA
TCGGCTAAGCGCCCAGACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCT
AAGAATATGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGCTTACGGTAGCAAGACCAG
C
Found at i:17737767 original size:26 final size:26
Alignment explanation
Indices: 17737715--17737767 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17737705 GTTGGCTTAG
* *
17737715 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCATGTATAA
17737741 GCATATAGAGTTCATTCCCA-GTATAA
1 GCATATAGAGTTCATT-CCATGTATAA
17737767 G
1 G
17737768 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCATGTATAA
Found at i:17738429 original size:26 final size:26
Alignment explanation
Indices: 17738393--17738445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17738383 GTTGACTTAG
*
17738393 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17738419 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17738445 G
1 G
17738446 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Done.