Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 155 of 402
Found at i:17738770 original size:158 final size:159
Alignment explanation
Indices: 17738572--17738903 Score: 377
Period size: 157 Copynumber: 2.1 Consensus size: 159
17738562 TAGGCATCGG
* * ** * *
17738572 GAGTTCATT-CCATGTCTAAGCTCCAGCCAGACCAAAGGTTGTGGCAGTGGGATCGGCAGCACAT
1 GAGTTCATTCCCATGTCTAAGATCCAGCCAGACCAAAGGTTGAGGCAGCAGGATCGACAGCACAC
* * * * **
17738636 AGAGGGGAATCGGGTCGATCCTCGGTTTGCCCATTATGCCTCTCCGATTGGCTCAGCACCCGCAC
66 AG-GGGGAATCAGGCCGATCCCCGGCTTGCCCATTATGCCTCTCCGACCGGCTCAGCACCCGCAC
17738701 GCTCATTTCGTGGGTTGACTTAGGCATAC-
130 GCTCATTTCGTGGGTTGACTTAGGCATACA
** * *
17738730 GAGTTCATTCCCA-GTCTAAGAT-CAGACCAGACTGAGGGTTGAGGTAGCAGGATCGACAGCACA
1 GAGTTCATTCCCATGTCTAAGATCCAG-CCAGACCAAAGGTTGAGGCAGCAGGATCGACAGCACA
* * * * * * *
17738793 CAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCTACCGGCTGAGCGCCTGCAC
65 CAGGGGGAATCAGGCCGATCCCCGGCTTGCCCATTATGCCTCTCCGACCGGCTCAGCACCCGCAC
* *
17738858 GCTCGTTTCGTGGGTTGGCTTAGGCATACA
130 GCTCATTTCGTGGGTTGACTTAGGCATACA
*
17738888 GACTTCATT-CCATGTC
1 GAGTTCATTCCCATGTC
17738904 CAAGCCCCAG
Statistics
Matches: 144, Mismatches: 26, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 82 0.57
158 59 0.41
159 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
GAGTTCATTCCCATGTCTAAGATCCAGCCAGACCAAAGGTTGAGGCAGCAGGATCGACAGCACAC
AGGGGGAATCAGGCCGATCCCCGGCTTGCCCATTATGCCTCTCCGACCGGCTCAGCACCCGCACG
CTCATTTCGTGGGTTGACTTAGGCATACA
Found at i:17738937 original size:158 final size:158
Alignment explanation
Indices: 17738515--17738939 Score: 417
Period size: 158 Copynumber: 2.7 Consensus size: 158
17738505 GCAAATTCTA
** ** * * * *
17738515 CCTCTCCGGTCGGCTCAGTGCCCGTACGCCCGTTTCATGGGTTGGGTTAGGCAT-CGGGAGTTCA
1 CCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC--GAGTTCA
* ** * * ** * *
17738579 TTCCATGTCTAAGCTCCAGCCAGACCAAAGGTTGTGGCAGTGGGATCGGCAGCACATAGAGGGGA
64 TTCCATGTCTAAGCACCAGCCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGAGGGGA
* * * *
17738644 ATCGGGTCGATCCTCGGTTTGCCCATTATG
129 ATCAGGCCGATCCCCGGCTTGCCCATTATG
** * *
17738674 CCTCTCCGATTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATT
1 CCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATT
* * *
17738739 CCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGAGGTAGCAGGATCGACAGCACACAG-GGGGG
66 -CCATGTCTAAGCACCAG-CCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGAGGGGA
* *
17738801 ATCAGGCCGATCCCCGGCTTGCGCATTCTG
129 ATCAGGCCGATCCCCGGCTTGCCCATTATG
* * * * *
17738831 CCTCTCCTACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGACTTCAT
1 CCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCAT
* * ***
17738896 TCCATGTCCAAGCCCCAGTTGGACTGAGGGTTGTGGTAGCAGGA
65 TCCATGTCTAAGCACCAGCCAGACTGAGGGTTGTGGTAGCAGGA
17738940 CCAACAGTGA
Statistics
Matches: 216, Mismatches: 44, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 82 0.38
158 83 0.38
159 50 0.23
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATT
CCATGTCTAAGCACCAGCCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGAGGGGAAT
CAGGCCGATCCCCGGCTTGCCCATTATG
Found at i:17739095 original size:26 final size:26
Alignment explanation
Indices: 17739065--17739117 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17739055 GTTGGCTTAG
*
17739065 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
17739091 GCATACAGAGTTTGTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17739117 G
1 G
17739118 ATCAGACTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17739588 original size:26 final size:26
Alignment explanation
Indices: 17739559--17739611 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17739549 GTTGGCTTAG
17739559 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
17739585 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17739611 G
1 G
17739612 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17740089 original size:26 final size:26
Alignment explanation
Indices: 17740060--17740112 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17740050 GTTGGCTTAG
17740060 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
17740086 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17740112 G
1 G
17740113 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17740574 original size:184 final size:184
Alignment explanation
Indices: 17740265--17740626 Score: 449
Period size: 184 Copynumber: 2.0 Consensus size: 184
17740255 AGGCATACGG
* * * * * * *
17740265 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGTAGGATTGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACAA
* * * * * *
17740330 GGGGGACAGGGTCGGTCCCCAGCTTACGCATTCTGCCTTTTCGATCGACTGAGGGCCCGCACACT
66 GGGGGACAGAGCCGGTCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACT
** *
17740395 CATTTTGTGTGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGA
131 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGA
* * *
17740449 AGTTCA-TCCCATGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGATAGCACACA
1 AGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACA
* ** * * *
17740513 AGGGGGATC-GAGCCGGTCCCCGGCTTGTGCATTCTGCCTCTCCTACCGGCTGAGCGCCCGCACG
65 AGGGGGA-CAGAGCCGGTCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACA
* *
17740577 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17740627 CCCAGCCAGA
Statistics
Matches: 149, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
183 5 0.03
184 143 0.96
185 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACAA
GGGGGACAGAGCCGGTCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACT
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGA
Found at i:17740816 original size:26 final size:26
Alignment explanation
Indices: 17740780--17740835 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
17740770 TGGGTTGACT
*
17740780 TAAGTATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
17740806 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
17740832 TAAG
1 TAAG
17740836 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:17741344 original size:26 final size:26
Alignment explanation
Indices: 17741308--17741360 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17741298 GTTGACTTAG
17741308 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
17741334 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
17741360 G
1 G
17741361 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:17742214 original size:158 final size:159
Alignment explanation
Indices: 17741925--17742216 Score: 363
Period size: 158 Copynumber: 1.8 Consensus size: 159
17741915 CAGGATCAAC
* * * *
17741925 AGTAGGATCGACAGCATATAGGGGCGAACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG
1 AGTAGGATCGACAGCACACAGGGGCGAACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCG
* *
17741990 ACCGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTC
66 ACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACCTAGGCATACGAAGTCCATTCCCAGTC
17742055 TAAGATCAGACCGAACCAAGGGTTGCGAT
131 TAAGATCAGACCGAACCAAGGGTTGCGAT
* * * * * * *
17742084 AGTAGGATCGACAGCACGCAGGGG-GGACCGAGCTGATCCTCGGCTTACGCATTTTTCCTTTCCG
1 AGTAGGATCGACAGCACACAGGGGCGAACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCG
** * * * * * * *
17742148 GTCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTCCATT-CCATGT
66 ACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACCTAGGCATACGAAGTCCATTCCCA-GT
17742212 CTAAG
130 CTAAG
17742217 CATATGGAGT
Statistics
Matches: 110, Mismatches: 22, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
157 3 0.03
158 86 0.78
159 21 0.19
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
AGTAGGATCGACAGCACACAGGGGCGAACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCG
ACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACCTAGGCATACGAAGTCCATTCCCAGTC
TAAGATCAGACCGAACCAAGGGTTGCGAT
Found at i:17742219 original size:26 final size:26
Alignment explanation
Indices: 17742190--17742242 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17742180 GTTGGCTTAG
17742190 GCATACGGAGTCCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
* *
17742216 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
17742242 G
1 G
17742243 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:17742253 original size:355 final size:356
Alignment explanation
Indices: 17741599--17742281 Score: 915
Period size: 355 Copynumber: 1.9 Consensus size: 356
17741589 GAGGGGGACT
* * * *
17741599 GGGCCGATCCCTAGCTTGCGCATTATGCCACTCCGGCCAGCTCAGCGCCCAAACGTTCGTTTCGT
1 GGGCCGATCCCCAGCTTGCGCATTATACCACTCCGACCAGCTCAGCGCCCAAACGTTCGTTTCAT
* * * * * *
17741664 GAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTTAGATCAGACCGGATCGAGGGTTGCGACA
66 GAGTTGACCTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTGCGACA
* * * * * *
17741729 GTAGGATCGATAGCACATAGGGTGGGACTGGGTCGGTCCTCGGCTTATGCATTTTGCCTCTCCGA
131 GTAGGATCGACAGCACACAGGGTGGGACCGGCTCGATCCTCGGCTTACGCATTTTGCCTCTCCGA
* *
17741794 TCGGCTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATACCATGTCT
196 TCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTCCATACCATGTCT
* * * *
17741859 AAGCATACGGAGTTCATTCCTAGCCTAAGATCGGACCGGACTGATGCTTGTGGTAGCAGGATCAA
261 AAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGCTTGTGGTAGCAGGATCAA
17741924 CAGTAGGATCGACAGCATATAGGGGCGAACC
326 CAGTAGGATCGACAGCATATAGGGGCGAACC
* * * * * *
17741955 GGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACAC-TT-GTTTC
1 GGGCCGATCCCCAGCTTGCGCATTATACCACTCCGACCAGCTCAGCG-CC-CAAACGTTCGTTTC
* *
17742018 ATGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGA
64 ATGAGTTGACCTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTGCGA
* * * *
17742083 TAGTAGGATCGACAGCACGCAGGG-GGGACCGAGCT-GATCCTCGGCTTACGCATTTTTCCTTTC
129 CAGTAGGATCGACAGCACACAGGGTGGGACCG-GCTCGATCCTCGGCTTACGCATTTTGCCTCTC
* * * * *
17742146 CGGTCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTCCATTCCATG
193 CGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTCCATACCATG
* * * *
17742211 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGTAGCAGGAT
258 TCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGCTTGTGGTAGCAGGAT
*
17742276 CGACAG
323 CAACAG
17742282 CACGCAGGGG
Statistics
Matches: 280, Mismatches: 44, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
355 150 0.54
356 122 0.44
357 4 0.01
358 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (356 bp):
GGGCCGATCCCCAGCTTGCGCATTATACCACTCCGACCAGCTCAGCGCCCAAACGTTCGTTTCAT
GAGTTGACCTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTGCGACA
GTAGGATCGACAGCACACAGGGTGGGACCGGCTCGATCCTCGGCTTACGCATTTTGCCTCTCCGA
TCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTCCATACCATGTCT
AAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGCTTGTGGTAGCAGGATCAA
CAGTAGGATCGACAGCATATAGGGGCGAACC
Found at i:17742355 original size:184 final size:184
Alignment explanation
Indices: 17742040--17742399 Score: 490
Period size: 184 Copynumber: 2.0 Consensus size: 184
17742030 AGGCATACGA
*
17742040 AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGATAGTAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAG
* * * * * * * *
17742105 GGGGGACCGAGCTGATCCTCGGCTTACGCATTTTTCCTTTCCGGTCGGCTGAGCGCCTGTACGCT
66 GGGGGACCGAGCTGATCCCCGGCTTACACATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCT
*
17742170 CGTTTCGTGGGTTGGCTT-AGGCATACGGAGTCCATTCCATGTCTAAGCATATGG
131 CGTTTCGTGGGTTGG-TTGAGGCATACAGAGTCCATTCCATGTCTAAGCATATGG
* * * * *
17742224 AGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAG
* * * * * *
17742289 GGGGGATCG-GGTCGTTCCCCGGCTTGCACATTCTACCTCTCCTGCCGGTTGAGCGCCCGCACGC
66 GGGGGACCGAGCT-GATCCCCGGCTTACACATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGC
*
17742353 TCGTTTCGTGGGTTGGTTGAGGCATACAGAGTTCATTCCATGTCTAA
130 TCGTTTCGTGGGTTGGTTGAGGCATACAGAGTCCATTCCATGTCTAA
17742400 ACCCCAGCCA
Statistics
Matches: 152, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
183 4 0.03
184 148 0.97
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAG
GGGGGACCGAGCTGATCCCCGGCTTACACATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGTTGAGGCATACAGAGTCCATTCCATGTCTAAGCATATGG
Found at i:17743658 original size:158 final size:159
Alignment explanation
Indices: 17743247--17743697 Score: 410
Period size: 158 Copynumber: 2.8 Consensus size: 159
17743237 GATTTTGTCT
* * ** * * * *
17743247 CTCCGGCCGACTGAGCTCCCGCATGCTTGTTCCATGGGTTGGCTTATGCATACGGAGTTCATTCC
1 CTCCGGCCGACTCAGCACCCAAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * *
17743312 CAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCATGATCGATAGCATGCAAGGAGGGACCG
66 CAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAAGGAGGGACCG
* * *
17743377 GGTCGGTCCCCTGCTTGCGCATCCTACCT
131 GGTCGATCCCCTGCTTGCGCATCATACCA
* * ** *
17743406 CTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-C
1 CTCCGGCCGACTCAGCACCCAAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * **
17743470 CATGTCTAAGCCCTAG-TCAGACCGAGGGTTGTGGTAGTGGGACCG-CAGCACGCAGAGG-GGGA
66 CA-GTCTAAGATC-AGATCGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCA-AGGAGGGA
* * *
17743532 CTGGGTCGAT-CCCTAGCTTGCGCATTATGCCA
128 CCGGGTCGATCCCCT-GCTTGCGCATCATACCA
* * * *
17743564 CTCCGGCC-AGCTCAGCGCCCAAACGTTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTC
1 CTCCGGCCGA-CTCAGCACCCAAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * ** * *
17743628 CCAATCTTAGATCAGATCGGATCGAGGGTTGCGATAGTAGGATCGACAGCACATAAGGTGGGACT
65 CCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAAGGAGGGACC
17743693 GGGTC
130 GGGTC
17743698 AGTCCTCGGC
Statistics
Matches: 237, Mismatches: 46, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
157 7 0.03
158 119 0.50
159 110 0.46
160 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CTCCGGCCGACTCAGCACCCAAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAAGGAGGGACCG
GGTCGATCCCCTGCTTGCGCATCATACCA
Found at i:17744161 original size:26 final size:26
Alignment explanation
Indices: 17744125--17744177 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17744115 GTTGGCTTAG
17744125 GCATATGGAGTCCATT-CCATGTCTAA
1 GCATATGGAGTCCATTCCCA-GTCTAA
*
17744151 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
17744177 G
1 G
17744178 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTCCATTCCCAGTCTAA
Found at i:17744284 original size:184 final size:185
Alignment explanation
Indices: 17743975--17744335 Score: 519
Period size: 184 Copynumber: 2.0 Consensus size: 185
17743965 AGGCATACGA
*
17743975 AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGATAGTAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAG
** * * * *
17744040 GGGGGACCGAGCCGATCCCCGACTTGTGCATTTTACCTTTTCGGTCGGTTGAGCGCCCGCACGCT
66 GGGGGACCGAGCCGATCCCCGACTTGCACATTCTACCTCTCCGGCCGGTTGAGCGCCCGCACGCT
*
17744105 CGTTTCGTGGGTTGGCTT-AGGCATA-TGGAGTCCATTCCATGTCTAAGCATATGG
131 CGTTTCGTGGGTTGG-TTGAGGCATACAGGAGTCCATTCCATGTCTAAGCATATGG
* * * * *
17744159 AGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAG
* * * * * *
17744224 GGGGGATCGGGTCGTTCCCCGGCTTGCACATTCTACCTCTCCTGCCGGTTGAGCGCCCGCACGCT
66 GGGGGACCGAGCCGATCCCCGACTTGCACATTCTACCTCTCCGGCCGGTTGAGCGCCCGCACGCT
*
17744289 CGTTTCGTGGGTTGGTTGAGGCATACAGGAGTTCATTCCATGTCTAA
131 CGTTTCGTGGGTTGGTTGAGGCATACAGGAGTCCATTCCATGTCTAA
17744336 ACCCCAGCCA
Statistics
Matches: 155, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
183 2 0.01
184 134 0.86
185 19 0.12
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (185 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAG
GGGGGACCGAGCCGATCCCCGACTTGCACATTCTACCTCTCCGGCCGGTTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGTTGAGGCATACAGGAGTCCATTCCATGTCTAAGCATATGG
Found at i:17745581 original size:26 final size:26
Alignment explanation
Indices: 17745551--17745603 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17745541 GTTGGCTTAG
17745551 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17745577 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17745603 G
1 G
17745604 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17747241 original size:26 final size:26
Alignment explanation
Indices: 17747191--17747243 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17747181 GTTGACATAG
*
17747191 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
**
17747217 GCATATGGAGTTCATTTCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
17747243 G
1 G
17747244 GTTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:17747518 original size:159 final size:158
Alignment explanation
Indices: 17747249--17747600 Score: 427
Period size: 159 Copynumber: 2.2 Consensus size: 158
17747239 CTAAGGTTGG
* * *
17747249 ACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCT
1 ACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGAGGGGACCGGGCCGATCCCCGGCT
* * * * *
17747314 TGTGCATTCTGCCTCCCCAACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
66 TATGCATTCTACCTCCCCAACCGACTCAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGAAT
*
17747379 ACAG-AGTTCATTCCATGTCTAAGCCCTA
131 A-AGAAGTTCATTCCATGTCTAAGCCCCA
* ** * * * * *
17747407 GCTGGACCGAGGGTTATGGCAGCGGGACCGGCAGCACGTAGAAGGGGATCGGGCCGATCCTCGGC
1 ACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAG-AGGGGACCGGGCCGATCCCCGGC
* ** * * * * *
17747472 TTATGCATTCTACCTCTCCGGCTGGCTCAGAGCCCGTACGCTCGTTTCGTGGTTTGGCTTAGGAA
65 TTATGCATTCTACCTCCCCAACCGACTCAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGAA
*
17747537 TATGAAGTTCATTCCATGTCTAAGCCCCA
130 TAAGAAGTTCATTCCATGTCTAAGCCCCA
* *
17747566 ACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGC
1 ACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGC
17747601 GAGATCGACA
Statistics
Matches: 159, Mismatches: 33, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
158 34 0.21
159 125 0.79
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
ACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGAGGGGACCGGGCCGATCCCCGGCT
TATGCATTCTACCTCCCCAACCGACTCAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGAAT
AAGAAGTTCATTCCATGTCTAAGCCCCA
Found at i:17747719 original size:171 final size:171
Alignment explanation
Indices: 17747424--17747732 Score: 379
Period size: 171 Copynumber: 1.8 Consensus size: 171
17747414 CGAGGGTTAT
* * * * *
17747424 GGCAGCGGGACCGGCAGCACGTAGAAGGGGATCGGGCCGATCCTCGGCTTATGCATTCTACCTCT
1 GGCAGCGAGACCGACAGCACGTAGAAGGGGATCGAGCCGATCCTCGGCTTACGCATTATACCTCT
* * * * * * * * * *
17747489 CCGGCTGGCTCAGAGCCCGTACGCTCGTTTCGTGGTTTGGCTTAGGAATATGAAGTTCAT-TCCA
66 ACGACCGGCTCAGAGACCGCACGCTCGTTTCATGGGTTGACTTAGGAATACGAAGTTCATCCCCA
17747553 TGTCTAAGCCCCAACCAGACCGAGGGTTGTGGTAGCAGGATC
131 -GTCTAAGCCCCAACCAGACCGAGGGTTGTGGTAGCAGGATC
* * *
17747595 GGCAGCGAGATCGACAGCACGTAG-AGGGAGATCGAGCTGATCCTCGGCTTACGCATTATGCCTC
1 GGCAGCGAGACCGACAGCACGTAGAAGGG-GATCGAGCCGATCCTCGGCTTACGCATTATACCTC
* * * * *
17747659 TACGACCGGTTGAGCGACCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
65 TACGACCGGCTCAGAGACCGCACGCTCGTTTCATGGGTTGACTTAGGAATACGAAGTTCATCCCC
17747724 AGTCTAAGC
130 AGTCTAAGC
17747733 ATATGGAGTT
Statistics
Matches: 113, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
170 4 0.04
171 106 0.94
172 3 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (171 bp):
GGCAGCGAGACCGACAGCACGTAGAAGGGGATCGAGCCGATCCTCGGCTTACGCATTATACCTCT
ACGACCGGCTCAGAGACCGCACGCTCGTTTCATGGGTTGACTTAGGAATACGAAGTTCATCCCCA
GTCTAAGCCCCAACCAGACCGAGGGTTGTGGTAGCAGGATC
Found at i:17747735 original size:26 final size:26
Alignment explanation
Indices: 17747705--17747757 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17747695 GTTGACTTAG
17747705 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17747731 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17747757 G
1 G
17747758 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17748095 original size:514 final size:514
Alignment explanation
Indices: 17747120--17748075 Score: 1125
Period size: 514 Copynumber: 1.9 Consensus size: 514
17747110 CACCTGTTCA
* ** * * *
17747120 ATCCCCGGCTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCACACGCTCGTTTCGTTGGTTG
1 ATCCCCGGCTTACGCATCATGCCTCTCTGACCGGCTGAGCGACCACACGCTCGTTTCATGGGTTG
* * * **
17747185 ACATAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTTCCAATCTAAGGTTGGA
66 ACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGA
* * *
17747250 CCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTT
131 CCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCAGCTT
** * * *
17747315 GTGCATTCTGCCTCCCCAACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
196 ACGCATTCTACCTCCCCAACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTAAGGCATA
* ** * * * * *
17747380 CAGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTATGGCAGCGGGACCGGCAGCACG
261 CAGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACGAGAGTTAGGGCAACGGGACCGGCAGCACA
* * * * * *
17747445 TAGAAGGGGATCGGGCCGATCCTCGGCTTATGCATTCTACCTCTCCGGCTGGCTCAGAGCCCGTA
326 CAGAAGGGGATCGAGCCGATCCTCGGCTTATGCATTATACCTCCCCGGCTGACTCAGAGCCCGAA
* ** * * * *
17747510 CGCTCGTTTCGTGGTTTGGCTTAGGAATATGAAGTTCATTCCATGTCTAAGCCCCAACCAGACCG
391 CGCTCGTTTCGTGGGTTAACTTAGGAATACGAAGTTCATTCCATCTCTAAGACCCAACCAGACCA
17747575 AGGGTTGTGGTAGCAGGATCGGCAGCGAGATCGACAGCACGTAGAGGGAGATCGAGCTG
456 AGGGTTGTGGTAGCAGGATCGGCAGCGAGATCGACAGCACGTAGAGGGAGATCGAGCTG
* * * *
17747634 ATCCTCGGCTTACGCATTATGCCTCTAC-GACCGGTTGAGCGACCGCACGCTCGTTTCATGGGTT
1 ATCCCCGGCTTACGCATCATGCCTCT-CTGACCGGCTGAGCGACCACACGCTCGTTTCATGGGTT
* *
17747698 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
65 GACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAG
* ** * ** * * * *
17747763 ACTAGACCGAGGGTTGTGACAGTAGGATCGGTAGCACGTAGGGGGGATCAGGCCGATCCCTATCT
130 ACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCAGCT
* *** * * ** *
17747828 TACGTATTCTACCTTTTCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTTGGTTGGCTAAGGCAT
195 TACGCATTCTACCTCCCCAACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTAAGGCAT
** *
17747893 AGGGAGTTCATTCCAT-TCCTAAGCCCCAGCCAGAATGAGAGTTAGGGCAACGGGACCGGCAGCA
260 ACAGAGTTCATTCCATGT-CTAAGCCCCAGCCAGAACGAGAGTTAGGGCAACGGGACCGGCAGCA
** * * *
17747957 CACA-AAGTGGGATCGAGCTTATCC-CTGGCTTGTGCATTAT-CCGTCCCC-GATCGACTCAGTG
324 CACAGAAG-GGGATCGAGCCGATCCTC-GGCTTATGCATTATACC-TCCCCGGCT-GACTCAGAG
* *
17748018 CCCGAACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCA-CTCTAAGA
385 CCCGAACGCTCGTTTCGTGGGTTAACTTAGGAATACGAAGTTCATT-CCATCTCTAAGA
17748076 TCGGATCGGA
Statistics
Matches: 361, Mismatches: 74, Indels: 14
0.80 0.16 0.03
Matches are distributed among these distances:
513 9 0.02
514 348 0.96
515 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (514 bp):
ATCCCCGGCTTACGCATCATGCCTCTCTGACCGGCTGAGCGACCACACGCTCGTTTCATGGGTTG
ACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGA
CCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCAGCTT
ACGCATTCTACCTCCCCAACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTAAGGCATA
CAGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACGAGAGTTAGGGCAACGGGACCGGCAGCACA
CAGAAGGGGATCGAGCCGATCCTCGGCTTATGCATTATACCTCCCCGGCTGACTCAGAGCCCGAA
CGCTCGTTTCGTGGGTTAACTTAGGAATACGAAGTTCATTCCATCTCTAAGACCCAACCAGACCA
AGGGTTGTGGTAGCAGGATCGGCAGCGAGATCGACAGCACGTAGAGGGAGATCGAGCTG
Found at i:17748425 original size:26 final size:26
Alignment explanation
Indices: 17748395--17748447 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17748385 GTTGGCTTAG
17748395 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
17748421 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
17748447 G
1 G
17748448 AGTTTGAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:17750033 original size:26 final size:26
Alignment explanation
Indices: 17750003--17750055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17749993 GTTGACTTAG
17750003 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
17750029 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17750055 G
1 G
17750056 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17750546 original size:26 final size:26
Alignment explanation
Indices: 17750517--17750569 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17750507 GTTGACTTAG
*
17750517 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17750543 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17750569 G
1 G
17750570 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17752073 original size:26 final size:26
Alignment explanation
Indices: 17752037--17752089 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17752027 GTTGACTTAG
17752037 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * *
17752063 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17752089 G
1 G
17752090 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17752351 original size:159 final size:158
Alignment explanation
Indices: 17752127--17752566 Score: 478
Period size: 159 Copynumber: 2.8 Consensus size: 158
17752117 CAGGATCGGT
* * * * * * *
17752127 AGCACGCAGTGGGGATCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGC
1 AGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCAGGTCGGCTGAGCGC
* * * *
17752192 CCGCCCG-TCCGTTTCGTGGGTTGGTGTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
66 CCGCACGCT-CATTTCGTGGGTTGGT-TAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* *
17752255 CGAACAGAGGGTTGTGGTAACGGGACCGAC
129 CGAACAGAGGGTTGCGGCAACGGGACCGAC
* * * *
17752285 AGCACGCAGAGGGGGATCGGGTTGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCG
1 AGCACGCAG-GGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCAGGTCGGCTGAGCG
* * * * * *
17752350 CCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAATTCATTCC-TAGTCTAAG-ATCGGA
65 CCCGCACGCTCATTTCGTGGGTTG-GTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGA
* * * * *
17752413 CCGGACTGAGGGTTGCGGCAGCTGGATCGAC
128 CCGAACAGAGGGTTGCGGCAACGGGACCGAC
* *
17752444 AGCACGTAGGGGGGATCGGGTCGAT-CCTCGACTTGTGCATTATGCCTCTCAGG-CTGGCTGAGC
1 AGCACGCAGGGGGGATCGGGTCGATCCCT-GACTTGCGCATTATGCCTCTCAGGTC-GGCTGAGC
* *
17752507 ACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 GCCCGCACGCTCATTTCGTGGGTTGG-TTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17752567 TACGGAGTTC
Statistics
Matches: 233, Mismatches: 39, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
157 4 0.02
158 104 0.45
159 123 0.53
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
AGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCAGGTCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCG
AACAGAGGGTTGCGGCAACGGGACCGAC
Found at i:17752537 original size:158 final size:157
Alignment explanation
Indices: 17752063--17752564 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 157
17752053 CCCAGTCTAA
* ** * * **
17752063 GCATACGAAGTTCATTCCCA-GTGTAAGATCGGATAGGACCGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGAAGTTCATT-CCATGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
17752127 AGCACGCAGTGGGGATCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCGAT-CCCGACTTGCGCATTATGCCTCTCAGGTCGGCTGAGCGC
* *
17752192 CCGCCCG-TCCGTTTCGTGGGTTGG-TGTAG
129 CCGCACGCT-CATTTCGTGGGTTGGCT-TAG
* * * ** * * * * * *
17752221 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGAACAGAGGGTTGTGGTAACGGGACCGAC
1 GCATACGAAGTTCATTCCATGTCTAAGATCGGA-CCGGACAGAGGGTTGCGGCAGCAGGATCGAC
* * * *
17752285 AGCACGCAGAGGGGGATCGGGTTGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCG
65 AGCACGCAG-GGGGGATCGGGTCGATCCC-GACTTGCGCATTATGCCTCTCAGGTCGGCTGAGCG
* *
17752350 CCCGAACGCTCATTTCGTGGGTTGACTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
17752380 GCATACGAAATTCATTCC-TAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCTGGATCGAC
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCAGGATCGAC
* * *
17752444 AGCACGTAGGGGGGATCGGGTCGATCCTCGACTTGTGCATTATGCCTCTCAGG-CTGGCTGAGCA
65 AGCACGCAGGGGGGATCGGGTCGATCC-CGACTTGCGCATTATGCCTCTCAGGTC-GGCTGAGCG
*
17752508 CCCGCACGCTCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
17752538 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
17752565 CATACGGAGT
Statistics
Matches: 277, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 147 0.53
159 120 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCGGACCGGACAGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCGACTTGCGCATTATGCCTCTCAGGTCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:17752568 original size:26 final size:26
Alignment explanation
Indices: 17752538--17752590 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17752528 GTTGGCTTAG
17752538 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17752564 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17752590 G
1 G
17752591 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17752783 original size:26 final size:26
Alignment explanation
Indices: 17752747--17752825 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
17752737 GTTGACTTAG
* **
17752747 GCATACAGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17752773 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17752799 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17752825 G
1 G
17752826 ATCAGACCAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17753236 original size:11 final size:11
Alignment explanation
Indices: 17753207--17753238 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
17753197 CCCAGGGGAC
*
17753207 CATCGTCAGAA
1 CATCGTCGGAA
17753218 CATCGTCGGAA
1 CATCGTCGGAA
17753229 CATCGTCGGA
1 CATCGTCGGA
17753239 GAGCCTAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAA
Found at i:17753849 original size:26 final size:26
Alignment explanation
Indices: 17753812--17753864 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17753802 GTTGACTTAG
*
17753812 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* *
17753838 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
17753864 G
1 G
17753865 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:17754110 original size:158 final size:159
Alignment explanation
Indices: 17753879--17754345 Score: 543
Period size: 158 Copynumber: 2.9 Consensus size: 159
17753869 GACCAGACCA
* * *
17753879 AGGGTTGACAGCAGCAGGATCGACAGCACGCAGGAGGGATCGGGCCTATCCTCGAC-TAGCGCAT
1 AGGGTT-ACAGTAGCAGGATCGACAGCACGTAGGAGGGATCGGGCCGATCCTCGACTTA-CGCAT
* * * *
17753943 TCTGCCTCTCTGACCTGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCACAGGGAGT
64 TCTGCCTCTCTGACCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGT
17754008 TCATTCCATGTCTAAGCCCCA-ACCGGACTG
129 TCATTCCATGTCTAAGCCCCAGACCGGACTG
* * * * *
17754038 AGGGTTACGGTAGTAGGATCGACAGCACGTAGGAGGAACCGGGCCGATCCTCAACTTACGCATTC
1 AGGGTTACAGTAGCAGGATCGACAGCACGTAGGAGGGATCGGGCCGATCCTCGACTTACGCATTC
* ** * *
17754103 TACCTCTCTG-GTAGGCTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTACGCATACGGAGTT
66 TGCCTCTCTGACCA-GCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
** * *
17754167 CATTCCCA-GTCTAAG-ATCAGACTGGATTG
130 CATT-CCATGTCTAAGCCCCAGACCGGACTG
* * * * * *
17754196 AGGGTTGCAGTAGCAGGATC-AGCAGCACGTAGGGGGGATTGGGTCGATCCCCGACTTGCGCATT
1 AGGGTTACAGTAGCAGGATCGA-CAGCACGTAGGAGGGATCGGGCCGATCCTCGACTTACGCATT
** * *
17754260 CTGCCTCT-TCGACCAGCTGAGCGCCCGCACGCTTGTTTCATGGGTTAGCTTAGGCATACCGAGT
65 CTGCCTCTCT-GACCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGT
*
17754324 TCATTCCTTGTCTAAGCCCCAG
129 TCATTCCATGTCTAAGCCCCAG
17754346 TCGGTCCGAG
Statistics
Matches: 255, Mismatches: 44, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
157 6 0.02
158 234 0.92
159 15 0.06
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
AGGGTTACAGTAGCAGGATCGACAGCACGTAGGAGGGATCGGGCCGATCCTCGACTTACGCATTC
TGCCTCTCTGACCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAGACCGGACTG
Found at i:17755222 original size:26 final size:26
Alignment explanation
Indices: 17755193--17755245 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17755183 GTTGACTTAG
17755193 GCATACGGAGTTCA-TCCCGAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17755219 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17755245 G
1 G
17755246 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17755949 original size:159 final size:158
Alignment explanation
Indices: 17755587--17755988 Score: 414
Period size: 159 Copynumber: 2.5 Consensus size: 158
17755577 CCTAGTCTAA
* * * *
17755587 GCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGACCGACA
* * * * * * *
17755652 GCACACAGGGGGGACCGAGCCGATCCTCGGCTTACGCGTTCTGCCTCTCCATCCAGCTGAGCACC
66 GCACACAGGGGGGACCGAGCCGATCCCCAGCTTACACATTATGCCTCTCCAGCCAGCTCAGCACC
* * * *
17755717 CGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CGAACGCCCATTTCCTGGGTTGACTTAG
* ** * * **
17755745 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTC-ACAGTTGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTG-CGACAGCAGGACCG
** * * * **
17755807 ACAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGCTGGCTCAG
63 ACAGCACACAG-GGGGGACCGAGCCGATCCCCAGCTTACACATTATGCCTCTCCAGCCAGCTCAG
* *
17755872 CCCCCGAACGCTCATTTCCTGGGTTGACTTAG
127 CACCCGAACGCCCATTTCCTGGGTTGACTTAG
* * * * *
17755904 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATTGAGGGTTACGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGACCGACA
*
17755969 GCACGCAGGGGGGACCGAGC
66 GCACACAGGGGGGACCGAGC
17755989 TAGTCCTTGG
Statistics
Matches: 192, Mismatches: 45, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.02
158 65 0.34
159 121 0.63
160 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGACCGACA
GCACACAGGGGGGACCGAGCCGATCCCCAGCTTACACATTATGCCTCTCCAGCCAGCTCAGCACC
CGAACGCCCATTTCCTGGGTTGACTTAG
Found at i:17756295 original size:26 final size:26
Alignment explanation
Indices: 17756248--17756297 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17756238 GTTGGCTTAG
*
17756248 GCATACGGAGTTCATCCGCAGTCTGA
1 GCATACGGAGTTCATACGCAGTCTGA
17756274 GCATACGGAGTTCATTAC-CAGTCT
1 GCATACGGAGTTCA-TACGCAGTCT
17756298 AAGATCGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACGCAGTCTGA
Found at i:17756382 original size:184 final size:187
Alignment explanation
Indices: 17755904--17756384 Score: 433
Period size: 184 Copynumber: 2.6 Consensus size: 187
17755894 GTTGACTTAG
* * * ** **
17755904 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATTGAGGGTTACGACAGCAGGATC-GAT
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCAG-T
* * * * *** * * * * ** *
17755968 AGCACGCAGGGGGGACC-GAGCTAGTCCTTGGATTACGC-GTCTACCT-TTCTGGTCGACTGAGT
65 AGCACTCAGGAGGGACCAG-GCCAATCCCCAGCTTACGCATTCTGCCTCTTC-AGTCGGTTGAGC
*
17756030 GTCCGCATGTCATATTTGTGGCGTTGACTTAGGCAGTGACGGAGTTCATCCCCAGTCTAA
128 GTCCGCACGTCATATTTGTGGCGTTGACTTAGGCAGTGACGGAGTTCATCCCCAGTCTAA
* * *
17756090 GCATATGGAGTTCATTCTGAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCAGTA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCAGTA
* * *
17756155 GCACTCAGTAGGGACCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCAGTCGGTTGAGCGTC
66 GCACTCAGGAGGGACCAGGCCAATCCCCAGCTTACGCATTCTGCCTCTTCAGTCGGTTGAGCGTC
* * * *
17756220 CGCACGTTCAT-TTTGTTG-GTTGGCTTAGGCA-T-ACGGAGTTCATCCGCAGTCTGA
131 CGCACG-TCATATTTGTGGCGTTGACTTAGGCAGTGACGGAGTTCATCCCCAGTCTAA
* * * * * **
17756274 GCATACGGAGTTCATTAC-CAGTCTAAGATCGGATCGGTCCGAGGGTTGCGGTAGCAGGATTGGT
1 GCATACGGAGTTCATT-CTCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCAGT
* ** ** *
17756338 AGCA-TGCAGGGGGGACTGGGCTGATCCCCAGCTTACGTATTCTGCCT
65 AGCACT-CAGGAGGGACCAGGCCAATCCCCAGCTTACGCATTCTGCCT
17756385 TCCGATCGGC
Statistics
Matches: 241, Mismatches: 47, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
183 1 0.00
184 108 0.45
185 2 0.01
186 93 0.39
187 30 0.12
188 7 0.03
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.26
Consensus pattern (187 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCAGTA
GCACTCAGGAGGGACCAGGCCAATCCCCAGCTTACGCATTCTGCCTCTTCAGTCGGTTGAGCGTC
CGCACGTCATATTTGTGGCGTTGACTTAGGCAGTGACGGAGTTCATCCCCAGTCTAA
Found at i:17756557 original size:26 final size:26
Alignment explanation
Indices: 17756528--17756578 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17756518 AGGCTTAGGC
17756528 ATACAGAGTTCA-TCACCAGTCTAAGT
1 ATACAGAGTTCATTC-CCAGTCTAAGT
17756554 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17756579 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:17757033 original size:26 final size:26
Alignment explanation
Indices: 17756997--17757049 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17756987 GTTGGCTTAG
17756997 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17757023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17757049 G
1 G
17757050 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17757746 original size:26 final size:26
Alignment explanation
Indices: 17757710--17757759 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17757700 GACTTAGGCA
17757710 TATGGAGTTCATCCCCAGTCTAAGCG
1 TATGGAGTTCATCCCCAGTCTAAGCG
*
17757736 TATGGAGTTCATTCCCAGTCTAAG
1 TATGGAGTTCATCCCCAGTCTAAG
17757760 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TATGGAGTTCATCCCCAGTCTAAGCG
Found at i:17758095 original size:159 final size:155
Alignment explanation
Indices: 17757739--17758234 Score: 462
Period size: 158 Copynumber: 3.1 Consensus size: 155
17757729 CTAAGCGTAT
* * * * * *
17757739 GGAGTTCATTCCCAGTCTAAGATCGGACTGGAACGATGGTTGCGGCAGTAGGATCGACAGCACGC
1 GGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * * *
17757804 AGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCGCC-TACAC
66 AGGGGGGACCGGGCCGAT-CCCGGCTTACGCATTATGCCTCTC-CGTCGGCTGAGCGCCGCACAC
*
17757868 GTCCGTTTCGTGGGTTGGCTTAGGCATAG
129 -T-CGTTTCGTGGGTTGGCTTAGGCATAC
* * ** * * * *
17757897 GGAGTTCATT-TCATGTCTAAG-CCCCAGCCGAACTGAGGGTTGTGGCAGCGGGATCGATAGCAC
1 GGAGTTCATTCCCAT-TCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCAC
* * * *
17757960 GCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTTTCCGTCTGGCTCAGCGCCCGC
64 GCAG-GGGGGACCGGGCCGATCC-CGGCTTACGCATTATGCCTCTCCGTC-GGCTGAGCG-CCGC
* *
17758025 ACACTCATTTCGTGGGTTGACTTAGGCATAC
125 ACACTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * **
17758056 AGAGTTCATTCCCATTCCAAGATCGGACCGGGCCAAGGGTTACGATAGCAGGATCGATAGCACGC
1 GGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * * * * * *
17758121 AGGGGCGATCGGGCCGATCCCTGACTTACGCA-TACTGCCTCTCCGACCGACGGAGTAGCCGCAC
66 AGGGGGGACCGGGCCGATCCC-GGCTTACGCATTA-TGCCTCTCCG-TCGGCTGAG-CGCCGCAC
*
17758185 ACTCGTTTCATGGGTTGGCTTAGGCATAC
127 ACTCGTTTCGTGGGTTGGCTTAGGCATAC
17758214 GGAGTTCATT-CCATGTCTAAG
1 GGAGTTCATTCCCAT-TCTAAG
17758235 CCCCAACTGG
Statistics
Matches: 268, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 11 0.04
158 134 0.50
159 111 0.41
160 8 0.03
161 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
GGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
AGGGGGGACCGGGCCGATCCCGGCTTACGCATTATGCCTCTCCGTCGGCTGAGCGCCGCACACTC
GTTTCGTGGGTTGGCTTAGGCATAC
Found at i:17758432 original size:26 final size:26
Alignment explanation
Indices: 17758393--17758444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17758383 TTGACTTAGA
17758393 CATACGGAGCTCA-TCCCTAGTCTAAG
1 CATACGGAGCTCATTCCC-AGTCTAAG
*
17758419 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGCTCATTCCCAGTCTAAG
17758445 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGCTCATTCCCAGTCTAAG
Found at i:17758785 original size:26 final size:26
Alignment explanation
Indices: 17758735--17758787 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17758725 GTTGGCTTAG
*
17758735 GCATACAGAGTTCATTCCATTTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
17758761 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
17758787 G
1 G
17758788 ATGTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17759837 original size:159 final size:158
Alignment explanation
Indices: 17759674--17759972 Score: 346
Period size: 158 Copynumber: 1.9 Consensus size: 158
17759664 GCCCCAGTCA
* * * ** *
17759674 GACCGAGGGTTATGGCAGCGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGC
1 GACCGAGGGTTACGACAGCAGGACCAACAGCACACAG-GAGGGACCGGGCCGATCCCCGGCTTGC
* * *
17759739 TCATTATGCCTCTCCAGTCGGCTCAGCGTCCGTACGCTCGTTCCATGGGTTGACTTAGGCATACA
65 GCATTATGCCTCTCCAGTCGGCTCAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACA
17759804 GAGTTCATTCCCTAACTAACATCGGACCG
130 GAGTTCATTCCCTAACTAACATCGGACCG
* * * * * * * *
17759833 GACCGAGGGTTGCGATAGTAGGATCAACAGCACACAGGGGGGATCGGGTCGATCCTCGGCTTGCG
1 GACCGAGGGTTACGACAGCAGGACCAACAGCACACAGGAGGGACCGGGCCGATCCCCGGCTTGCG
* *** * * * * * *
17759898 CATTCTGCCTCTTTGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
66 CATTATGCCTCTCCAGTCGGCTCAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACAG
17759963 AGTTCATTCC
131 AGTTCATTCC
17759973 ATGTCTAAGC
Statistics
Matches: 113, Mismatches: 27, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
158 86 0.76
159 27 0.24
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GACCGAGGGTTACGACAGCAGGACCAACAGCACACAGGAGGGACCGGGCCGATCCCCGGCTTGCG
CATTATGCCTCTCCAGTCGGCTCAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACAG
AGTTCATTCCCTAACTAACATCGGACCG
Found at i:17759947 original size:158 final size:158
Alignment explanation
Indices: 17759482--17759972 Score: 465
Period size: 159 Copynumber: 3.1 Consensus size: 158
17759472 CCCAGTCTAA
* *
17759482 GCATACAGAGTTCATTCCC-AGTCTAAGAT-GGAACTGGACCGAGGGTTGCGGTAGTAGGATCAG
1 GCATACAGAGTTCATTCCCTA-TCTAACATCGG-ACCGGACCGAGGGTTGCGGTAGTAGGATCAG
* * *
17759545 CAGCACGTAGGGGGGATCGGGTCG--CCCCGACTTGCGCATTCTGCCT-TTCCGGTCGACTGAGC
64 CAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTT-CGGTCGGCTGAGC
* * * **
17759607 GCCCGTGCGCCCATTTCACAGGTTGGCTTAG
128 GCCCGTACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * * ** * ** * *
17759638 GCATA-AGGAGTTCATTTCATGTCTAAGCCCCAG-TCAGACCGAGGGTTATGGCAGCGGGACCGG
1 GCATACA-GAGTTCATTCCCTATCTAA-CATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCAG
* * * * * * * *
17759701 CAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGCTCATTATGCCTCTCCAGTCGGCTCAGC
64 CAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
* * *
17759766 GTCCGTACGCTCGTTCCATGGGTTGACTTAG
128 GCCCGTACGCTCGTTTCATGGGTTGGCTTAG
* * *
17759797 GCATACAGAGTTCATTCCCTAACTAACATCGGACCGGACCGAGGGTTGCGATAGTAGGATCAACA
1 GCATACAGAGTTCATTCCCTATCTAACATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCAGCA
* * *
17759862 GCACACAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTTGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
* * *
17759927 CGCATGCTCGTTTCGTGGGTTGGCTTAG
131 CGTACGCTCGTTTCATGGGTTGGCTTAG
*
17759955 GCATACGGAGTTCATTCC
1 GCATACAGAGTTCATTCC
17759973 ATGTCTAAGC
Statistics
Matches: 253, Mismatches: 72, Indels: 18
0.74 0.21 0.05
Matches are distributed among these distances:
155 1 0.00
156 49 0.19
157 11 0.04
158 90 0.36
159 100 0.40
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCTATCTAACATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCAGCA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
CGTACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17759984 original size:26 final size:26
Alignment explanation
Indices: 17759955--17760007 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17759945 GTTGGCTTAG
*
17759955 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
17759981 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
17760007 G
1 G
17760008 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:17760706 original size:26 final size:26
Alignment explanation
Indices: 17760677--17760729 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17760667 GTTGACTTAG
*
17760677 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
* *
17760703 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
17760729 G
1 G
17760730 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:17761504 original size:26 final size:26
Alignment explanation
Indices: 17761474--17761525 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17761464 TTGACTTTGA
*
17761474 CATACGGAGTTCATCCCTAGTCTAAG
1 CATACAGAGTTCATCCCTAGTCTAAG
* *
17761500 CATACAGAGTTCATTCCTTGTCTAAG
1 CATACAGAGTTCATCCCTAGTCTAAG
17761526 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATCCCTAGTCTAAG
Found at i:17767674 original size:26 final size:26
Alignment explanation
Indices: 17767644--17767696 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17767634 GTTGGCTTAG
17767644 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17767670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17767696 G
1 G
17767697 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17768054 original size:26 final size:26
Alignment explanation
Indices: 17768024--17768076 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17768014 GTTGACTTAG
17768024 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
17768050 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17768076 G
1 G
17768077 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17768518 original size:158 final size:156
Alignment explanation
Indices: 17768050--17768551 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 156
17768040 CCTAGTCTAA
* * * **
17768050 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTACGGAAGCAGGATCGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTACGGCAG-AGGATCGAC
* * *
17768114 AGCACGCAGGGGGGACCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCCGGCAGACTGAGCGC
64 AGCACGCAGGGGGGACCGGGC-GATCCTCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGC
* *
17768179 TCGCACGC-CTGTTTCATGGGTT-AGCTTAG
128 CCGCACGCTC-ATTTCATGGGTTGA-CTTAG
* * * ** ** * * * ** * *
17768208 GTATAGGGAGTTCATTTCGTGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGAGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGAACCGAGGGTTACGGCAGAG-GATCGAC
* * * * *
17768272 AGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTTCGA-TCGGCTCAGT
64 AGCACGCAG-GGGGGACCGGG-CGATCCTCGGCTTACGCATTCTGCCTCTCCGACT-GGCTGAGC
* * * *
17768336 GCCCGCATGCTCACTTCGTGGGTTGACTTAT
126 GCCCGCACGCTCATTTCATGGGTTGACTTAG
*
17768367 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAG-AGGATCGACA
* * * * *
17768432 GCACGTAGGGGGGACCGGGTCGATCC-CTGACTTGCGCATTCTGCCTCTCCGACTGGTTGAACGC
65 GCACGCAGGGGGGACCGGG-CGATCCTC-GGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGC
* *
17768496 CCGCACGCTCATTTCATTGGTTGGCTTAG
128 CCGCACGCTCATTTCATGGGTTGACTTAG
17768525 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17768552 CATACGGAGT
Statistics
Matches: 267, Mismatches: 64, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 140 0.52
159 118 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGAGGATCGACAG
CACGCAGGGGGGACCGGGCGATCCTCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCG
CACGCTCATTTCATGGGTTGACTTAG
Found at i:17768556 original size:26 final size:26
Alignment explanation
Indices: 17768525--17768577 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17768515 GTTGGCTTAG
17768525 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
17768551 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
17768577 G
1 G
17768578 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:17769282 original size:26 final size:26
Alignment explanation
Indices: 17769252--17769304 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17769242 GTTGACTTAG
*
17769252 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
17769278 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17769304 G
1 G
17769305 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17769666 original size:159 final size:158
Alignment explanation
Indices: 17769278--17769666 Score: 374
Period size: 159 Copynumber: 2.4 Consensus size: 158
17769268 CCCAGTCTAA
* * ** *
17769278 GCATATGGAGTTCATTCCCAATCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATATGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
17769343 GCACGCAGAGGGTTGCGGCAGCAGGATCCCTAGCTTACGCATTCTACCTCTCCGGCCGGCTGAGC
65 GCACGCAGAGGGATGCGGCA-CA-GATCCATAGCTTACGCATTATACCTCTCCGACCGGCTCAAC
*
17769408 ACCCGCACACCCGTTTCATGGGTTGGCTTAG
128 ACCCGCACACCCGTTTCATGGGTTGACTTAG
* * ** * * *
17769439 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCACCCGAACCGAGGGTTGTGGCAGCAGGA-CGGG
1 GCATATGGAGTTCATTCCA-GTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATC-GA
* * * **
17769502 CAGCACGCAGAGGGGGAATG-GGC-C-GATCCATGGCTTGCGCATTATGCCTCTCCGATTGGCTC
63 CAGCACGCAGA--GGG-ATGCGGCACAGATCCATAGCTTACGCATTATACCTCTCCGACCGGCTC
* * *
17769564 AACACCCGTACGCTCGTTTCATGGGTTGACTTAG
125 AACACCCGCACACCCGTTTCATGGGTTGACTTAG
* * * *
17769598 GCATATAGAATTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATATGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
17769663 GCAC
65 GCAC
17769667 ATAGGGGGGA
Statistics
Matches: 183, Mismatches: 36, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
159 106 0.58
160 15 0.08
161 54 0.30
163 6 0.03
164 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGAGGGATGCGGCACAGATCCATAGCTTACGCATTATACCTCTCCGACCGGCTCAACACC
CGCACACCCGTTTCATGGGTTGACTTAG
Found at i:17769792 original size:26 final size:26
Alignment explanation
Indices: 17769756--17769834 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
17769746 GTTGGCTTAG
*
17769756 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
17769782 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
17769808 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
17769834 G
1 G
17769835 ATCAAACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:17770691 original size:26 final size:26
Alignment explanation
Indices: 17770662--17770714 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17770652 GTTGGCTTAG
* *
17770662 GCATACGGAGTTTATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
17770688 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
17770714 G
1 G
17770715 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:17771956 original size:26 final size:25
Alignment explanation
Indices: 17771926--17771977 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
17771916 GTTGACTTAG
* *
17771926 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAACTTCAT-CCCAGTCTAA
*
17771952 GCATACAAACTTCATTCCAGTCTAA
1 GCATACAAACTTCATCCCAGTCTAA
17771977 G
1 G
17771978 ATCGGACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (25 bp):
GCATACAAACTTCATCCCAGTCTAA
Found at i:17772462 original size:26 final size:26
Alignment explanation
Indices: 17772425--17772477 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17772415 GTTGGCTTAG
*
17772425 GCATACGGAGTTCATTCT-ATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
17772451 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
17772477 G
1 G
17772478 ATCGGAACGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:17772807 original size:171 final size:170
Alignment explanation
Indices: 17772485--17772842 Score: 437
Period size: 171 Copynumber: 2.1 Consensus size: 170
17772475 AAGATCGGAA
* * *
17772485 CGGACCAAGGGTTGTAGCAGCAGGACCAGTAGCAGGATCGACAGCACACAGAGGGGACCGAGCCG
1 CGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGAGGGGACCGAGCCG
* * * * ** *
17772550 GTCCCCGACCTGTGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCATTTCATGGGTTG
66 ATCCCCAACCTGCGCATTATACCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCATGGGTTG
* *
17772615 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACTAGC
131 GCTTAGGCATACAGAGTTCATTCCATGTCAAAGCACCAGC
* * * * *
17772655 CGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGCAGCACACAGAGGGGGACCGGGCT
1 CGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGA-GGGGACCGAGCC
* * * * * * * *
17772720 GATCCCCAACTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACCCGCATGCCCGTTTCGTGGGTT
65 GATCCCCAACCTGCGCATTATACCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCATGGGTT
** * *
17772785 GGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAGT
130 GGCTTAGGCATACAGAGTTCATTCCATGTCAAAGCACCAGC
*
17772826 CGGACAGAGGGTTGTGG
1 CGGACCGAGGGTTGTGG
17772843 TAGTGGGGCC
Statistics
Matches: 157, Mismatches: 30, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
170 46 0.29
171 111 0.71
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (170 bp):
CGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGAGGGGACCGAGCCG
ATCCCCAACCTGCGCATTATACCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCATGGGTTG
GCTTAGGCATACAGAGTTCATTCCATGTCAAAGCACCAGC
Found at i:17773282 original size:684 final size:683
Alignment explanation
Indices: 17772091--17773333 Score: 1589
Period size: 684 Copynumber: 1.8 Consensus size: 683
17772081 CGCACGCTTA
* * *
17772091 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCTACCGAACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCACCCACCGAACAGAGGGTT
** ** * * *
17772156 GTGGCAGTGGGATTGGTAGCACACAGAGTGGGATCCGATTGATCCTCAGCTTGCGCATTATGACT
66 GTGGCAGTGGGACCGACAGCACACAAAGGGGGATCCGATGGATCCTCAGCTTGCGCATTATGACT
* * * *
17772221 CTCCGGTCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
131 CTCCGGACGGCTCAACGCCCGAACACTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCC
* * *
17772286 CAGTCTAAGACCGGACCAAACCAAGGTTGCAGCAACAGGATCGATAGCACGTAGGGGGGACCAGG
196 CAGTCTAAGACCAGACCAAACCAAGGTTGCAGCAACAGGATCGACAGCACGTAGGGCGGACCAGG
* * *
17772351 TCGATCCCCGGCTTACGCATTCTGCCTCTTCGATCAGCTGAGCACCCGCACACTTGTTTCGTGGG
261 CCGATCCCCGGCTTACACATTCTGCCTCTTCGATCAGCTGAGCACCCGCACACTCGTTTCGTGGG
* * *
17772416 TTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATC
326 TTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* ** * *
17772481 GGAACGGACCAAGGGTTGTAGCAGCAGGACCAGTAGCAGGATCGACAGCACACAGAGGGGACCGA
391 AGAACGGACCAAGGGTTACAGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGAGGGGACAGA
** * * * ** *
17772546 GCCGGTCCCCGACCTGTGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCATTTCATGG
456 GCCGACCCCCGACCTGCGCATTCTACCTCTCCAACCGACAGAGCACCCGCACGCTCATTTCAGGG
*
17772611 GTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCACTAGCCGGACCGAGGGTTGTGGCAG
521 GTTGACTTAGGCATACAGAGTTCA-TCCATAGTCTAAGCACTAGCCGGACCGAGGGTTGTGGCAG
17772675 CAGGACCGGCAGCGGGATCGGCAGCACACAGAGGGGGACCGGGCTGATCCCCAACTTGCGCATTA
585 CAGGACCGGCAGCGGGATCGGCAGCACACAGAGGGGGACCGGGCTGATCCCCAACTTGCGCATTA
17772740 TGCCTCTCCGGCTGGCTGAGCACCCGCATGCCCG
650 TGCCTCTCCGGCTGGCTGAGCACCCGCATGCCCG
* * *
17772774 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGC-CCCAGTCGGACAGAGGGT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCACCCA-CCGAACAGAGGGT
* * * * * * * * *
17772838 TGTGGTAGTGGGGCCGACCGCACGCAAAGGGGGAAT-GGGTGGATCCTCGGCTTGCGTATTATGC
65 TGTGGCAGTGGGACCGACAGCACACAAAGGGGG-ATCCGATGGATCCTCAGCTTGCGCATTATGA
* * *
17772902 CTCTCC-GACATGCTCAATGCCCGAACACTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCAT
129 CTCTCCGGAC-GGCTCAACGCCCGAACACTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCAT
* * * * * **
17772966 TCCCAGTCTACGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATCGACAGCACGTAGGGCGGAC
193 TCCCAGTCTAAGACCAGACCAAACCAA-GGTTGCAGCAACAGGATCGACAGCACGTAGGGCGGAC
* * * * * * * *
17773031 CGGGCCGATCCCCTGCTTGCACATTCTGCCTTTTCGATCGGTTGAGCACCCGCACGCTCGTTTTG
257 CAGGCCGATCCCCGGCTTACACATTCTGCCTCTTCGATCAGCTGAGCACCCGCACACTCGTTTCG
* * *
17773096 TGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCCAAGCATATGGAGTTCATTCCCAGTCTAA
322 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * ** *
17773161 GATCAG-ACAGGACCGAA-GGTTACGGTAGTAGGACTAGCAGCAGGATTGGCAGCATGCAGGGGG
387 GATCAGAAC-GGACC-AAGGGTTACAGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGAGGG
* * * * * *
17773224 GATAGGGCCGACCCCCGACTTGCGCATTCTATCTCTCCAACCGACAGAGCATCCGCACGCTCGTT
450 GACAGAGCCGACCCCCGACCTGCGCATTCTACCTCTCCAACCGACAGAGCACCCGCACGCTCATT
* * *
17773289 TCGGGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
515 TCAGGGGTTGACTTAGGCATACAGAGTTCATCCATAGTCTAAGCA
17773334 TACAAAATTC
Statistics
Matches: 465, Mismatches: 88, Indels: 13
0.82 0.16 0.02
Matches are distributed among these distances:
682 5 0.01
683 182 0.39
684 276 0.59
685 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (683 bp):
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCACCCACCGAACAGAGGGTT
GTGGCAGTGGGACCGACAGCACACAAAGGGGGATCCGATGGATCCTCAGCTTGCGCATTATGACT
CTCCGGACGGCTCAACGCCCGAACACTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCC
CAGTCTAAGACCAGACCAAACCAAGGTTGCAGCAACAGGATCGACAGCACGTAGGGCGGACCAGG
CCGATCCCCGGCTTACACATTCTGCCTCTTCGATCAGCTGAGCACCCGCACACTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATC
AGAACGGACCAAGGGTTACAGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGAGGGGACAGA
GCCGACCCCCGACCTGCGCATTCTACCTCTCCAACCGACAGAGCACCCGCACGCTCATTTCAGGG
GTTGACTTAGGCATACAGAGTTCATCCATAGTCTAAGCACTAGCCGGACCGAGGGTTGTGGCAGC
AGGACCGGCAGCGGGATCGGCAGCACACAGAGGGGGACCGGGCTGATCCCCAACTTGCGCATTAT
GCCTCTCCGGCTGGCTGAGCACCCGCATGCCCG
Found at i:17773846 original size:26 final size:26
Alignment explanation
Indices: 17773806--17773858 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17773796 GTTGGCATAG
*
17773806 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCAT-TCTAA
*
17773832 GCATACGGAGCTCATTCCCATTCTAA
1 GCATACAGAGCTCATTCCCATTCTAA
17773858 G
1 G
17773859 TTTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCATTCTAA
Found at i:17775265 original size:158 final size:158
Alignment explanation
Indices: 17774914--17775271 Score: 425
Period size: 158 Copynumber: 2.3 Consensus size: 158
17774904 AAGCATACGA
* *
17774914 AGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGCAAGACCGACAGCACGCAA
1 AGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGACCGACAGCACGCAA
* * * *
17774979 GGGGGACCTGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCC
66 GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCC
* *
17775044 CGTTTCGTGGGTTGGCTTAGGCATAGGG
131 CGTTTCATGGGTTGACTTAGGCATAGGG
** * * * * ** *
17775072 AGTTCATT-CTATGTCTAAGCCCCAGCT-GGAGCGAGGGTTGTGGCAGCGGGACCGGCAGCACGC
1 AGTTCATTCCTA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGACAGCAAGACCGACAGCACGC
* * * * *
17775135 AGAGGGGGATCGGGTCGATCCTCGACTTGCG-ATTATGCCTCTCCGACTGGCTCAGCGCCTGCAC
64 A-AGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCAC
* *
17775199 GCTCGTTTCATGGGTTGACTTAGGCATATGG
128 GCCCGTTTCATGGGTTGACTTAGGCATAGGG
* * *
17775230 AGTTCATTCCCAGTGTAAGATCAGATCGGATCGAGGGTTGCG
1 AGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCG
17775272 GTAGCAGTAC
Statistics
Matches: 164, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 7 0.04
158 126 0.77
159 31 0.19
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGACCGACAGCACGCAA
GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCC
CGTTTCATGGGTTGACTTAGGCATAGGG
Found at i:17775798 original size:26 final size:26
Alignment explanation
Indices: 17775762--17775811 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17775752 GGCTTAGGCA
17775762 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
17775788 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17775812 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:17776148 original size:159 final size:156
Alignment explanation
Indices: 17775788--17776927 Score: 551
Period size: 159 Copynumber: 7.2 Consensus size: 156
17775778 TGTCTAAGCG
* * * * * *
17775788 TACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCA
* * * * * * * *
17775853 CGAAGGAGGGCCCAGGCTTATCCCCGGCTTGCATATTTTGCCTTTTCGGTCGACTGAGGGCCCGC
66 CGCAGGAGGGACCAGGC-GATCCTCGGCTTACACATTATGCCTTTTCGG-CGACTGAGCGCCCGC
* * * *
17775918 ACACCCATTTCGTGGGTTGGCTTAGGCA
129 ACGCTCATTTCATGGGTTGACTTAGGCA
* ** * *
17775946 TAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGACCGACAG
1 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAG
* * * * *
17776009 CACGCAGAGAGGGATCGGGTCGATCCTCGACTTACACATTATGCCTTTTCGGCCACCTCAGCGCC
64 CACGCAG-GAGGGACCAGG-CGATCCTCGGCTTACACATTATGCCTTTTCGGCGA-CTGAGCGCC
*
17776074 TGCACGCTCATTTCATGGGTTGACTTAGGCA
126 CGCACGCTCATTTCATGGGTTGACTTAGGCA
* ** * * * **
17776105 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGGGGGTTACGACAGCAAGATCGATGGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCA
* * * * * * * * ** * *
17776170 CGCAGGGGAGGACCAGATCGGTCCTCGGCTTGCGCATTCTGCCTGTCCGGTCGGTTGATCACCCG
66 CGCAGGAG-GGACCAG-GCGATCCTCGGCTTACACATTATGCCTTTTCGG-CGACTGAGCGCCCG
** * *
17776235 CACGCTTGTTTCATGGGTTGCCTTAGGTA
128 CACGCTCATTTCATGGGTTGACTTAGGCA
* * * * **
17776264 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAAGGTTGTGGTAGCAGGACCGAC-TTA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCA
** ** * * * ** * * * * * * *
17776328 CGCATTCTA-CCACTCCGGCCA-ACTTAGC--ACCCA-CACGCCCGTTTCGTGGGTTGGCTTAG-
66 CGCA--GGAGGGAC-CAGGCGATCCTCGGCTTACACATTATG-CC-TTT--TCGG-CGACTGAGC
* * * * * *
17776387 GCATACGGA-GTTCATTCCAT--G-T--C-TAAGCG
123 GC--CCGCACGCTCATTTCATGGGTTGACTTAGGCA
* * * * * * *
17776416 TACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGACTGTAGGATCGATAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCA
* * * * * * * *
17776481 CGAAGGAGGGCCCAGGCTTATCCCCGGCTTGCATATTTTGCCTTTTCGGTCGACTGAGGGCCCGC
66 CGCAGGAGGGACCAGGC-GATCCTCGGCTTACACATTATGCCTTTTCGG-CGACTGAGCGCCCGC
* * * *
17776546 ACACCCATTTCGTGGGTTGGCTTAGGCA
129 ACGCTCATTTCATGGGTTGACTTAGGCA
* ** *
17776574 TAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGC-GAGACCGACA
1 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAG-GACCGACA
* * * * * * * *
17776636 GCACGCAGAGAGGGATCGGGCCAATCCTCGACTTACGCATTATGCCTTTCCGGTGAACTCAGCGC
63 GCACGCAG-GAGGGACCAGG-CGATCCTCGGCTTACACATTATGCCTTTTCGGCG-ACTGAGCGC
* *
17776701 CTGCACGCTCGTTTCATGGGTTGACTTAGGCA
125 CCGCACGCTCATTTCATGGGTTGACTTAGGCA
* * *
17776733 TACGGAGTTCATTCCAAGTGTAAGATCAGACCGGATCGAGGGTTGTGGTAGTAGTACCAACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T-T-GT-G--G------CAGCA
* * * * * * * * *
17776798 GGATCGACAGCACGTAGGGGGTGACCGGGTCGATCCTCGGCTTGCGCATTCTACC-TCTCTGGCC
54 GGACCGACAGCACGCAGGAGG-GACCAGG-CGATCCTCGGCTTACACATTATGCCTTTTC-GG-C
* * *
17776862 GGCTGAGCGCCCAG-ACACTCATTTCATGGGTTGGCTTAGGCA
115 GACTGAGCGCCC-GCACGCTCATTTCATGGGTTGACTTAGGCA
17776904 TACGGAGTTCATT-CCATGTCTAAG
1 TACGGAGTTCATTCCCA-GTCTAAG
17776928 CCCTAATCGA
Statistics
Matches: 707, Mismatches: 215, Indels: 107
0.69 0.21 0.10
Matches are distributed among these distances:
151 8 0.01
152 70 0.10
153 10 0.01
154 5 0.01
155 11 0.02
156 4 0.01
157 13 0.02
158 137 0.19
159 327 0.46
160 9 0.01
161 1 0.00
162 2 0.00
163 1 0.00
165 1 0.00
170 7 0.01
171 98 0.14
172 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCA
CGCAGGAGGGACCAGGCGATCCTCGGCTTACACATTATGCCTTTTCGGCGACTGAGCGCCCGCAC
GCTCATTTCATGGGTTGACTTAGGCA
Found at i:17776426 original size:26 final size:26
Alignment explanation
Indices: 17776390--17776439 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17776380 GGCTTAGGCA
17776390 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
17776416 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17776440 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:17777135 original size:25 final size:26
Alignment explanation
Indices: 17777084--17777135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17777074 GTTGACTTAG
17777084 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17777110 GCATATGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17777135 G
1 G
17777136 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17777613 original size:159 final size:159
Alignment explanation
Indices: 17777300--17777835 Score: 490
Period size: 159 Copynumber: 3.4 Consensus size: 159
17777290 TAAGCGTACA
* ** ** * * **
17777300 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGAAAGTAGGATCGGCAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACATA
* * * ** * * * * ** **
17777365 GG-GGGGCCCAGGCCTATCCTCGACTTACGCATTTTACCTCTCCGGTC-GACGGAGGGCCCGCAC
66 GGAGAGGACCAGACAGATCCCCGACTTACGCATTATGCCTCTCCGGCCAG-CTCAGCACCCGCAC
* ** * * *
17777428 ACCCATTTCGTGGGTTGGCTTAGGCATAGG
130 GCTTATTTCATGGGTTGACTTAGGCATACG
** *
17777458 GAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACA
1 GAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACA
* * * * *
17777521 TA-GAGAGGGATCGAGTC-GATCCCTGACTTACGCATTATGCCTTTCCGGCCAGCTCAGCGCCCG
64 TAGGAGA-GGA-CCAGACAGATCCCCGACTTACGCATTATGCCTCTCCGGCCAGCTCAGCACCCG
* **
17777584 TACGCTTATTTCATGGGTTGACTTAGGCATATA
127 CACGCTTATTTCATGGGTTGACTTAGGCATACG
* * ** * * *
17777617 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAAGATTGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACATA
* * * *
17777682 GGGGAGGACCAGACAGGTCCCCGACTTACGCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACG
66 GGAGAGGACCAGACAGATCCCCGACTTACGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACG
* *
17777747 CTTGTTTCATGGGTTGCCTTAGGCATACG
131 CTTATTTCATGGGTTGACTTAGGCATACG
* * *
17777776 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAAGGTTGTGGCAGCAGGATCGACAGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGC
17777836 GAGATTGACA
Statistics
Matches: 301, Mismatches: 67, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.01
158 53 0.18
159 233 0.77
160 11 0.04
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (159 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACATA
GGAGAGGACCAGACAGATCCCCGACTTACGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACG
CTTATTTCATGGGTTGACTTAGGCATACG
Found at i:17779373 original size:12 final size:12
Alignment explanation
Indices: 17779353--17779385 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
17779343 GAAGGTTACG
17779353 GCAGCAGGACCA
1 GCAGCAGGACCA
*
17779365 GCAGTAGGACCA
1 GCAGCAGGACCA
17779377 GCAGCAGGA
1 GCAGCAGGA
17779386 TCGACAGCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.33, C:0.27, G:0.36, T:0.03
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:17780192 original size:26 final size:26
Alignment explanation
Indices: 17780156--17780208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17780146 GGTGGCTTAG
*
17780156 GCATGCGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17780182 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17780208 G
1 G
17780209 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17780386 original size:196 final size:195
Alignment explanation
Indices: 17780098--17780645 Score: 620
Period size: 196 Copynumber: 2.7 Consensus size: 195
17780088 CCCCAGCTAG
** * * * *
17780098 CGCATTCTGCCTCTCCGGTAGGCTGAGTGCCCGCACTCTCGTTTCGTGGGTGGCTTAGGCATGCG
1 CGCATTCTGCCTCTCCGACAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTGGCTTAGGCATACG
*
17780163 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAAGGGT
66 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGT
* ** * *
17780228 TGTGGTAGTAGGACTAGCAGCAGGATC-GACAGCACGTAGGGGGGACCAGGTTGATCCCCGACTT
131 TGCGACAGTAGGACCAGCAGCAGGATCAG-CAGCACATAGGGGGGACCAGGTTGATCCCCGACTT
17780292 A
195 A
* *
17780293 CGCATTCTGCCTCTCCGACCGACTGAGCGGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGACAGACTGAGCGCCCGCACGCTCGTTTCGTGGG-TGGCTTAGGCATAC
17780358 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGG
65 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGG
* *** **
17780423 TTGCGACAGTAGGACCAGCAGCAGGATCAGTAGCACATAGGGGGGATTGGGCGGATCCCCAGCTT
130 TTGCGACAGTAGGACCAGCAGCAGGATCAGCAGCACATAGGGGGGACCAGGTTGAT-CCC--C--
17780488 GCACATTTTA
190 G-AC---TTA
* * * *
17780498 C-CTTTGCGGCCGGCCTCTCCGATCAG-CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1 CGCATT-----CTGCCTCTCCGA-CAGACTGAGCGCCCGCACGCTCGTTTCGTGGG-TGGCTTAG
* * * *
17780561 GCATACAGAGTTCATCCCCA-GTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGG
59 GCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAG
*
17780624 ACCGAGGGTTGCGACAGTAGGA
122 ACCAAGGGTTGCGACAGTAGGA
17780646 TCAATAGCAC
Statistics
Matches: 303, Mismatches: 31, Indels: 24
0.85 0.09 0.07
Matches are distributed among these distances:
195 43 0.14
196 120 0.40
197 4 0.01
199 1 0.00
201 1 0.00
202 2 0.01
204 3 0.01
205 4 0.01
208 1 0.00
209 119 0.39
210 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (195 bp):
CGCATTCTGCCTCTCCGACAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGT
TGCGACAGTAGGACCAGCAGCAGGATCAGCAGCACATAGGGGGGACCAGGTTGATCCCCGACTTA
Found at i:17780388 original size:26 final size:26
Alignment explanation
Indices: 17780352--17780404 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17780342 GTTGGCTTAG
17780352 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17780378 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17780404 G
1 G
17780405 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17780597 original size:26 final size:26
Alignment explanation
Indices: 17780561--17780613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17780551 GTTGACTTAG
*
17780561 GCATACAGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17780587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17780613 G
1 G
17780614 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17781092 original size:26 final size:26
Alignment explanation
Indices: 17781062--17781114 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17781052 GTTGGCTTAG
17781062 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
17781088 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17781114 G
1 G
17781115 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17781381 original size:273 final size:273
Alignment explanation
Indices: 17780893--17781390 Score: 705
Period size: 273 Copynumber: 1.8 Consensus size: 273
17780883 TTGTTTCACT
* *
17780893 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGTAG
1 GGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAG
* * * * * * * * * *
17780958 CAGGATCGACAGCACGCAAGGGGGACTGGGCCTATCCCTGGCTTACGCATTCTGCCTCTCCGGTT
66 CAGGATCAACAGCACACAAGGGGGACCGAGCCGAGCCATGGCTTACGCATTCTACCTCTCCGATC
* *
17781023 AGCTGAGCGCCCGGAGGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 AGCTGAGCGCCCGCAGGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAA
* *
17781088 GCATATGGAGTTCGTTCCCAGTCTAAGATCAGATCGGACCGAGGGTAGCGGCAGCAGGACCAGCA
196 GCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTAGCGGCAGCAGGACCAGCA
17781153 TGTTCATTTCATG
261 TGTTCATTTCATG
* * * * *
17781166 GGTTGACTTAGGCGTATAGAGTTCAATCCTAGTCTAAGATCAGACC-GAACTGAGGGTTACGGCC
1 GGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAG-ACCGAAGGTTACGG-C
**
17781230 A-CAGGATCAACAGCACAC-AGGAGGGACCGAGCCGAGCCATGGCTTGTGCATTCTACCTCTCCG
64 AGCAGGATCAACAGCACACAAGG-GGGACCGAGCCGAGCCATGGCTTACGCATTCTACCTCTCCG
* * * *
17781293 ATCGGCTGAGCGCCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTA
128 ATCAGCTGAGCGCCCGCAGGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTA
17781358 TAAGCATATGAAGTTCATTCCCAGTCTAAGATC
193 TAAGCATATGAAGTTCATTCCCAGTCTAAGATC
17781391 GAACTAGACT
Statistics
Matches: 195, Mismatches: 27, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
272 4 0.02
273 190 0.97
274 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (273 bp):
GGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAG
CAGGATCAACAGCACACAAGGGGGACCGAGCCGAGCCATGGCTTACGCATTCTACCTCTCCGATC
AGCTGAGCGCCCGCAGGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAA
GCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTAGCGGCAGCAGGACCAGCA
TGTTCATTTCATG
Found at i:17781734 original size:26 final size:26
Alignment explanation
Indices: 17781704--17781756 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17781694 GTTGACTTAG
17781704 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17781730 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17781756 G
1 G
17781757 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17782195 original size:158 final size:158
Alignment explanation
Indices: 17781730--17782231 Score: 541
Period size: 158 Copynumber: 3.2 Consensus size: 158
17781720 CCCAGTCTAA
* *
17781730 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGG-TGC-GATAGCAGGATCGA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCG-AGGGTTGCTG-TAGCAGGATCGA
* * ** * * * *
17781793 CAGCATGCTGGAGGGACCAAGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGGCTGAGCG
64 CAGCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCCGACTGAGCG
* * * * *
17781858 CCTGCACGCCCGTTTTGTGGTTTGGCTTAG
129 CCCGAACGCTCGTTTTGTGGGTTGACTTAG
* * ** * * * * *
17781888 GCATAGGGAGTTCATT-CAATGTCTAAGCCCCAG-CCAGATCGAGGGTTG-TGGCAACAGGACCG
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCT-GTAGCAGGATCG
** ** * * * * *
17781950 ACAGCACACAGAGGGGGATTGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGAT-CGACTCA
63 ACAGCATGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG-TCCGACTGA
*
17782014 GCGCCCGAACGCTGGTTTTGTGGGTTGACTTAG
126 GCGCCCGAACGCTCGTTTTGTGGGTTGACTTAG
*
17782047 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCTGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCTGTAGCAGGATCGACA
*
17782112 GCATGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGTCCGACTGAGCGCC
66 GCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCCGACTGAGCGCC
* *
17782177 CGTACGCTCGTTTCGTGGGTTGACTTAG
131 CGAACGCTCGTTTTGTGGGTTGACTTAG
17782205 GCATACGGAGTTCA-TCCTCAGTCTAAG
1 GCATACGGAGTTCATTCCT-AGTCTAAG
17782232 CATACGGAGT
Statistics
Matches: 276, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
157 11 0.04
158 142 0.51
159 120 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCTGTAGCAGGATCGACA
GCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCCGACTGAGCGCC
CGAACGCTCGTTTTGTGGGTTGACTTAG
Found at i:17782588 original size:697 final size:698
Alignment explanation
Indices: 17781608--17782928 Score: 1677
Period size: 697 Copynumber: 1.9 Consensus size: 698
17781598 CAAGTAGAGA
* * * *
17781608 GGGACTGAGCTGATCCCTGGCTTGCGTATTATGCCTCTCCGACCGACCGCTCCGACCAACTGAGT
1 GGGACTCAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACCGCTCCGACCAACTGAGC
* * * ** *
17781673 GCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
66 GCACGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACGG
* * * * * * *
17781738 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGGTGCGATAGCAGGATCGACAGCATGCTG
131 AGTTCATTCCCAATCTAAGATCGGACCGGACCAAAGGGTACGACAGCAGGATCAACAGCACGCAG
* * *
17781803 GAGGGACCAAGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCTGCACGCC
196 GAGGGACCAAGCCGATCCCCGACTTACACATTCTGCCTCTCCGACTGGCTAAGCGCCCGCACGCC
* *
17781868 CGTTTTGTGGTTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCAGATCGAGGG
261 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGG
* ** * *
17781933 TTGTGGCAACAGGACCGACAGCACACAGAGGGGGATTG-GGTCGATCCCCGGCTTGTGCATTATG
326 TTGTGGCAACAGGACCGACAGCACACAGAGGGAGACCGAGCT-GATCCCCGGCTTGCGCATTATG
* * * ** * *
17781997 CCTCTCCGA-TCGACTCAGCGCCCGAACGCTGGTTTTGTGGGTTGACTTAGGCATATGGAGTTCA
390 CCTCTCCAACT-GACTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAA
* * * * *
17782061 TTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCT-GTAGCAGGATCGACAGCATGCAGGGGGG
454 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-TGGCAGCAAGATCGACAGCACGCAGGGGGG
* *
17782125 ACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCG-TCCGACTGAGCGCCCGTACGCTCGTT
518 ACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGAT-CGACTGAGCGCCCGCACGCTCGTT
*
17782189 TCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCTCAGTCTAAGCATACGGAGTTCATTCCCAGT
582 TCATGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGCATACGGAGTTCATTCCCAGT
17782253 CAAAGATCGGATCAGACTAAGGGTTACGATAGTAGGACCAGCAGCACGTAGGG
646 CAAAGATCGGATCAGACTAAGGGTTACGATAGTAGGACCAGCAGCACGTAGGG
* * * * * *
17782306 GGGACTCAGCCGATCCCT-GCTTGTGCATTCTGCCTCTCCGACTGGCCTCTCCGACCGACTGAGC
1 GGGACTCAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACCGCTCCGACCAACTGAGC
* * *
17782370 GCACGCACACTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCTCAGTCAAAGCATACGG
66 GCACGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACGG
* * * * * * * *
17782435 AGTTCTTTCCCAATCTAATATCGGATCGGGCCAAAGGTTACGGCAGTAGTATCAACAGCACGCAG
131 AGTTCATTCCCAATCTAAGATCGGACCGGACCAAAGGGTACGACAGCAGGATCAACAGCACGCAG
* * * * * * * *
17782500 GGGGGATC-GGGCTATTCCCCGGCTTACGCATTCTGCCTCTCCG-GTCGGCTAAGCGCCCGCACG
196 GAGGGACCAAGCCGA-TCCCCGACTTACACATTCTGCCTCTCCGACT-GGCTAAGCGCCCGCACG
* * **
17782563 CCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCTGGACCGAG
259 CCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAG
*** * * **
17782628 GGTTGTGGCAGTGGGACCTACGGCATGCAGAGGGAGACCGAGCTGATCCCCGGCTTGCGCATTAT
324 GGTTGTGGCAACAGGACCGACAGCACACAGAGGGAGACCGAGCTGATCCCCGGCTTGCGCATTAT
* *
17782693 GCCTCTTCAACTGACTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGGGTTAA
389 GCCTCTCCAACTGACTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAA
* * **
17782758 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAAGATCGGTAGCACGCAGGGGGGA
454 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGA
* * * * * * * * *
17782823 CCGGGTCGGTCCTCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGTGCCTGCATGCTTGTTTC
519 CCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTC
*
17782888 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
584 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17782929 ATCGAGGGTT
Statistics
Matches: 522, Mismatches: 94, Indels: 15
0.83 0.15 0.02
Matches are distributed among these distances:
696 5 0.01
697 494 0.95
698 23 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (698 bp):
GGGACTCAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACCGCTCCGACCAACTGAGC
GCACGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACGG
AGTTCATTCCCAATCTAAGATCGGACCGGACCAAAGGGTACGACAGCAGGATCAACAGCACGCAG
GAGGGACCAAGCCGATCCCCGACTTACACATTCTGCCTCTCCGACTGGCTAAGCGCCCGCACGCC
CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGG
TTGTGGCAACAGGACCGACAGCACACAGAGGGAGACCGAGCTGATCCCCGGCTTGCGCATTATGC
CTCTCCAACTGACTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGACC
GGGCCGATCCCCGACTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCAT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAG
ATCGGATCAGACTAAGGGTTACGATAGTAGGACCAGCAGCACGTAGGG
Found at i:17783276 original size:26 final size:26
Alignment explanation
Indices: 17783246--17783298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17783236 GTTGACTTAG
*
17783246 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
*
17783272 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
17783298 G
1 G
17783299 AACGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:17783656 original size:158 final size:157
Alignment explanation
Indices: 17783272--17783657 Score: 373
Period size: 158 Copynumber: 2.4 Consensus size: 157
17783262 CCCAGTCTAA
* * *
17783272 GCATACGGAGTTCATTCCCACTCTAAGAACGAACCGGATCGAGGGTTGCGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACGAACCGGACCGAGGGTTGTGACAGCAGGATTGACA
* * * ** * *
17783337 GCACGGAAGGGGGACCGGGCTGGTCCCCGGCTTGCGCATTTTGCCTCTCTGATCGACTGAGCACC
66 GCACGCAAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTAGGCCTCTCCGATCGACCGAG-ACC
** *
17783402 CGTACGCACGTTTCGCGGGTTGGCTTAG
130 CAAACGCACGTTTCGCGGGTTGACTTAG
* ** * ** * * * *
17783430 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGATGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGAACGAACCGGACCGAGGGTTGTGACAGCAGGATTGAC
* * * * *
17783494 AGCACGCAGAGGGGTACCAGGCTGAT-CCTGGCTTGCGCATTAGGTCTCTCCGATCAGTTCCGTG
65 AGCACGCA-AGGGGGACCAGGCTGATCCCCGGCTTGCGCATTAGGCCTCTCCGATC-G-ACCGAG
* * * *
17783558 -CCTAAATGCTCGTTTCGTGGGTTGACTTAG
127 ACCCAAACGCACGTTTCGCGGGTTGACTTAG
* * * * *
17783588 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGACAACAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACGAACCGGACCGAGGGTTGTGACAGCAGGATTGACA
17783653 GCACG
66 GCACG
17783658 TAGAAAGGGA
Statistics
Matches: 177, Mismatches: 46, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.02
158 153 0.86
159 18 0.10
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAACGAACCGGACCGAGGGTTGTGACAGCAGGATTGACA
GCACGCAAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTAGGCCTCTCCGATCGACCGAGACCC
AAACGCACGTTTCGCGGGTTGACTTAG
Found at i:17783777 original size:26 final size:26
Alignment explanation
Indices: 17783747--17783799 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17783737 GTTGGCTTAG
* *
17783747 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
17783773 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
17783799 G
1 G
17783800 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:17784208 original size:513 final size:501
Alignment explanation
Indices: 17783214--17784366 Score: 1337
Period size: 513 Copynumber: 2.3 Consensus size: 501
17783204 GCCGGCTAAA
* *
17783214 TGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATAC
1 TGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATAC
* * * * * *
17783278 GGAGTTCATTCCCACTCTAAGAACGAACCGGATCGAGGGTTGCGACAGCAGGATTGACAGCACGG
65 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
* * * * *
17783343 AAGGGGGACCGGGCTGGTCCCCGGCTTGCGCATTTTGCCTCTCTGATCGACTGAGCACCCGTACG
130 AAGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCTGACCGACTGAGCACCCGCACG
* * *
17783408 CACGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAT
195 CACGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGTCGGACCGAG
* * *
17783473 GGTTGTGGCAGCAAGATCGACAGCACGCAGAGGGGTACCAGGCTGATCCTGGCTTGCGCATTAGG
260 GGTTATGGCAGCAAGACCGACAGCACGCAGAGGGGTACCAGGCCGATCCTGGCTTGCGCATTAGG
* * * * * * *
17783538 TCTCTCCGATCAGTTCCGTGCCTAAATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
325 CCTCTCCGATCAGCTCAGTACCCAAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* * * * *
17783603 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGACAACAGGATTGATAGCACGTAGAAAGGGA
390 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAACAGGATTGACAGCACGCAGAAAGGGA
* * ** ** *
17783668 TCGGGCCGGTCCCCGGCTTGGGCATTCTGCCTCTCAG-GCCGTCTGAG
455 CCGGGCCGATCCCAAGCTTACGCATTCTGCCTCTCAGAGCAGT-TGAG
* *
17783715 TGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
1 TGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* *
17783780 GAGTTAATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGTGGTAGTAGGACCAGTAGCAGGAT
66 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGG--GT--T-G--CGA-C---AGCAGGAT
* * * * * ** *
17783845 CGACAGTACGCATGGGGGACGGGGCTGATCCCTGGCTTATGCATTCTGCCTCT-TCGACCGGTTT
119 CGACAGCACGCAAGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCT-GACCGACTG
* * *
17783909 AGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCC
183 AGCACCCGCACGCACGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCC
* ** * *
17783974 AGTCGGACTGAGGGTTATGGCAGCGGGACCGATAGCACGCAGAGAGGG-ACCTGGCCGATCCCTG
248 AGTCGGACCGAGGGTTATGGCAGCAAGACCGACAGCACGCAGAG-GGGTACCAGGCCGAT-CCTG
* * *
17784038 GCTTGCGCATTATGCCTCTCCGATCGGCTCAGTACCCGAACGCTCGTTTCGTGGGTTGACTTAGG
311 GCTTGCGCATTAGGCCTCTCCGATCAGCTCAGTACCCAAACGCTCGTTTCGTGGGTTGACTTAGG
* * * * **
17784103 CTTACAGAGTTCATTCCTAGTTTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATTGACAG
376 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAACAGGATTGACAG
* * * *
17784168 CACGCAG-AGGGGACCGGGTCGATCCCAAGCTTACGCATTCTGCCTCTCCGATCAGTTGAG
441 CACGCAGAAAGGGACCGGGCCGATCCCAAGCTTACGCATTCTGCCTCTCAGAGCAGTTGAG
** * * * * * *
17784228 CACCCGCACGCTCGTTTCTTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGGATGCG
1 TGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
*** * *
17784293 GAGTTCATTCCCAGTCTAAGATCGGATTAGATCGAGGGTTGCGACAGCAGGATC-AGCAGCACAC
66 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGA-CAGCACGC
*
17784357 AGGGGGGACC
130 AAGGGGGACC
17784367 AGACCAATCC
Statistics
Matches: 543, Mismatches: 91, Indels: 36
0.81 0.14 0.05
Matches are distributed among these distances:
500 4 0.01
501 109 0.20
502 3 0.01
504 3 0.01
505 2 0.00
506 1 0.00
507 2 0.00
508 1 0.00
509 2 0.00
510 3 0.01
512 4 0.01
513 283 0.52
514 126 0.23
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (501 bp):
TGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
AGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCTGACCGACTGAGCACCCGCACGC
ACGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGTCGGACCGAGG
GTTATGGCAGCAAGACCGACAGCACGCAGAGGGGTACCAGGCCGATCCTGGCTTGCGCATTAGGC
CTCTCCGATCAGCTCAGTACCCAAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAACAGGATTGACAGCACGCAGAAAGGGAC
CGGGCCGATCCCAAGCTTACGCATTCTGCCTCTCAGAGCAGTTGAG
Found at i:17784251 original size:158 final size:159
Alignment explanation
Indices: 17783837--17784286 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 159
17783827 TAGGACCAGT
* * * * *
17783837 AGCAGGATCGACAGTACGCATG-GGGGACGGGGCTGATCCCTGGCTTATGCATTCTGCCTCTTCG
1 AGCAGGATCGACAGCACGCA-GAGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCG
* * * * * **
17783901 ACCGGTTTAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CAATGT
65 ATCGGTTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAATGT
* * * * *
17783965 CTAAGCCCCAGTCGGACTGAGGGTTATGGC
130 CTAAGCACCAGCCAGACCGAGGGTTACGGC
* * * * * *
17783995 AGCGGGACCGATAGCACGCAGAGAGGGACCTGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCG
1 AGCAGGATCGACAGCACGCAGAG-GGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCG
* * * * * *
17784060 ATCGGCTCAGTACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTCATTCCTA-GT
65 ATCGGTTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAATGT
* *
17784124 TTAAG-ATCAGACCAGACCGAGGGTTACGGC
130 CTAAGCACCAG-CCAGACCGAGGGTTACGGC
* * * **
17784154 AGTAGGATTGACAGCACGCAGAGGGGACCGGGTCGATCCCAAGCTTACGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGA
* * *
17784219 TCAGTTGAGCACCCGCACGCTCGTTTCTTGGGTT-AGCTTAGGCATACAGAGTTCATTCC-ATGT
66 TCGGTTCAGCACCCGCACGCTCGTTTCATGGGTTGA-CTTAGGCATACAGAGTTCATTCCAATGT
17784282 CTAAG
130 CTAAG
17784287 GATGCGGAGT
Statistics
Matches: 236, Mismatches: 50, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 112 0.47
159 119 0.50
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
AGCAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGA
TCGGTTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAATGTC
TAAGCACCAGCCAGACCGAGGGTTACGGC
Found at i:17784493 original size:26 final size:26
Alignment explanation
Indices: 17784457--17784509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17784447 GTTGACTTAG
17784457 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17784483 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17784509 G
1 G
17784510 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17784597 original size:197 final size:195
Alignment explanation
Indices: 17784230--17784799 Score: 637
Period size: 197 Copynumber: 2.9 Consensus size: 195
17784220 CAGTTGAGCA
* * *
17784230 CCCGCACGCTCGTTTCTTGGGTT-AGCTTAGGCATAC-AGAGTTCAT-TCCATGTCTAAGGATGC
1 CCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGA-AGTTCATCCCCA-GTCTAAGCAT-C
* * *** * *
17784292 GGAGTTCATTCCCAGTCTAAGATCGGATTAGATCGAGGGTTGCGACAGCAGGATCAGCAGCACAC
62 GAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAACAGCACGC
** * * * * * * * *
17784357 AGGGGGGACCA-GACCAATCCCCAGCTTGCGTATTCTACCTCTCCGATCGGCCTTTTCGGCCGCC
127 AGGGGGGA-CAGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCCTCTCCGACCGAC
17784421 TAAGC
191 TAAGC
* *
17784426 GCCCGCACGCTCCTTTCGCGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGA
1 -CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCAT-CGA
* * *
17784491 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGTAGGACCAACAGCACGCAG
64 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAACAGCACGCAG
* * ** *
17784556 GGGGGACAGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCGGCCTCTCCGACCGATTAA
129 GGGGGACAGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCCTCTCCGACCGACTAA
17784621 GC
194 GC
* *
17784623 CCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCAT-GTA
1 CC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATCG-A
* * * * * * *
17784687 GAGTTCATCCCCAGTCTAATATCAGACCGGACCGAGGGCTGCGACAACAGGATCGACAGCACGTA
64 -AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAACAGCACGCA
* * *
17784752 GGGGGGACCGGGTCGTTCCCCGACTTGCGCATTCTGCCTCTCCGATCG
128 GGGGGGACAGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
17784800 ACTGAGCGCC
Statistics
Matches: 314, Mismatches: 52, Indels: 14
0.83 0.14 0.04
Matches are distributed among these distances:
195 1 0.00
196 5 0.02
197 303 0.96
198 5 0.02
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (195 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATCGAAG
TTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGG
GGGACAGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCCTCTCCGACCGACTAAGC
Found at i:17784683 original size:26 final size:26
Alignment explanation
Indices: 17784654--17784705 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17784644 GTTGACTTAG
* *
17784654 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
17784680 GCATGTAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17784706 TATCAGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17785080 original size:158 final size:157
Alignment explanation
Indices: 17784687--17785180 Score: 496
Period size: 158 Copynumber: 3.1 Consensus size: 157
17784677 TAAGCATGTA
* * * * * *
17784687 GAGTTCATCCCCAGTCTAATATCAGACCGGACCGAGGGCTGCGACAACAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAACAGGATCGACAGCAC-AA
* *
17784752 GGGGGGACCGGGTCGTTCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGC
65 AGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGC
* *
17784817 TCGTTTCCTGGGTTGGCTTAGGCATAGG
130 TCGTTTCATGGGTTGGCTTAGGCATACG
* * * * * *
17784845 GAGTTCATT-CAATGTCTAAG-CCTAG-CCGGACCGAGGGTTGTGGCAGCGGGA-CAGGCAACAC
1 GAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAACAGGATC-GACAGCA-
* * * * * * * *
17784906 GCAAAGGGGGACCGGGTTGATCCCTGACTTGGGCATTATGCCTCTCCGACCGGCTCAGCTCCCGC
62 -CAAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGC
* *
17784971 ACGCTCGTTTCATGGGTTGACTTAGGCGTACG
126 ACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * * * * *
17785003 GAGTTAATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAATAGGATCGATAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAACAGGATCGACAGCACAAA
* * * * *
17785068 GGGGGAATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCC-AGTCGATTGAGCGCCTGCACG
66 GGGGG-ACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-TCGACTGAGCGCCCGCACG
*
17785132 CTCGATTCATGGGTTGGCTTAGGCATACG
129 CTCGTTTCATGGGTTGGCTTAGGCATACG
* *
17785161 AATTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
17785181 CATACGGAGT
Statistics
Matches: 266, Mismatches: 58, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 41 0.15
158 194 0.73
159 29 0.11
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAACAGGATCGACAGCACAAA
GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACG
Found at i:17785184 original size:26 final size:26
Alignment explanation
Indices: 17785154--17785206 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17785144 GTTGGCTTAG
*
17785154 GCATACGAATTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
17785180 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17785206 G
1 G
17785207 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17786438 original size:26 final size:26
Alignment explanation
Indices: 17786409--17786461 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17786399 GTTGACTTAG
17786409 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17786435 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17786461 G
1 G
17786462 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17786742 original size:159 final size:157
Alignment explanation
Indices: 17786499--17786937 Score: 440
Period size: 159 Copynumber: 2.8 Consensus size: 157
17786489 CAGGATCGAT
* * * * * *
17786499 AGCACGCAGGGAGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
1 AGCACGCAGGGAGGACCAGGCTGATCCCCGACTTTCGCATTCTGCCTTTCCGACCGGCTGAGCGC
* * * * * * *
17786564 CTGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAGCCCTAGCCG
66 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGCCCGAGCAG
* *
17786629 AACTGAGGGTTGTGGCAACGAAG-CCGAC
131 -ACCGAGGGTTGGGGCAAC-AAGACCGAC
* * * * * *
17786657 AGCACGCAGAGGAGGACCAAGCTGATCCTCGACTTTCACATTATGCCTTTCCGATCGGCTCAGCG
1 AGCACGCAG-GGAGGACCAGGCTGATCCCCGACTTTCGCATTCTGCCTTTCCGACCGGCTGAGCG
* * * *
17786722 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT-TATTCCCA-GTCTAAGATCGGA
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCT-TT-CCATGTCTAAG-CCCGA
* * * * * *
17786785 TCAGACCGATGGTTGGGGCAGCAGGATCGAT
127 GCAGACCGAGGGTTGGGGCAACAAGACCGAC
* *
17786816 AGCACGCAGGCG-GGACCGGGTTGATCCCCGACTTGT-GCATTCTGCCTCTT-CGACCGGCTGAG
1 AGCACGCAGG-GAGGACCAGGCTGATCCCCGACTT-TCGCATTCTGCCT-TTCCGACCGGCTGAG
* *
17786878 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAAGC
63 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGC
17786938 ATACGGTGTT
Statistics
Matches: 227, Mismatches: 44, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 101 0.44
159 117 0.52
160 7 0.03
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
AGCACGCAGGGAGGACCAGGCTGATCCCCGACTTTCGCATTCTGCCTTTCCGACCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGCCCGAGCAG
ACCGAGGGTTGGGGCAACAAGACCGAC
Found at i:17786892 original size:158 final size:158
Alignment explanation
Indices: 17786435--17786921 Score: 495
Period size: 158 Copynumber: 3.1 Consensus size: 158
17786425 CCCAGTCTAA
* * * *
17786435 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAGGATCGATA
1 GCATACAGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * *
17786500 GCACGCAGGGAGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
66 GCACGCAGGGAGGACCAGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCC
* * * *
17786565 TGCACGCCCATTTTGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * * * *
17786593 GCATAGGGAGTTCT-TT-CCATGTCTAAG-CCCTAGCC-GAACTGAGGGTTGTGGCAAC-GAAGC
1 GCATACAGAGTT-TATTCCCA-GTCTAAGATCGGA-CCAG-ACCGAGGGTTGCGGCAGCAGGA-T
* * * * * *
17786653 CGACAGCACGCAGAGGAGGACCAAGCTGATCCTCGACTT-TCACATTATGCCT-TTCCGATCGGC
61 CGATAGCACGCAG-GGAGGACCAGGCTGATCCCCGACTTGT-GCATTCTGCCTCTT-CGACCGGC
* *
17786716 TCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
123 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
17786752 GCATACAGAGTTTATTCCCAGTCTAAGATCGGATCAGACCGATGGTTGGGGCAGCAGGATCGATA
1 GCATACAGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
* *
17786817 GCACGCAGGCG-GGACCGGGTTGATCCCCGACTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGC
66 GCACGCAGG-GAGGACCAGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGC
17786881 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17786910 GCATACGGAGTT
1 GCATACAGAGTT
17786922 CATTGCATGT
Statistics
Matches: 259, Mismatches: 54, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 8 0.03
158 128 0.49
159 115 0.44
160 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGAGGACCAGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17786959 original size:26 final size:26
Alignment explanation
Indices: 17786910--17786962 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17786900 GTTGGCTTAG
*
17786910 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
17786936 GCATACGGTGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
17786962 G
1 G
17786963 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17787499 original size:367 final size:341
Alignment explanation
Indices: 17786680--17787842 Score: 1019
Period size: 367 Copynumber: 3.3 Consensus size: 341
17786670 GGACCAAGCT
* * * * * * *
17786680 GATCCTCGACTTTCACATTATGCCTTTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGA-CAGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * ** * * * * *
17786745 GACTTAGGCATACAGAGTTTATTCCCA-GTCTAAG-ATCGGATCAGACCGATGGTTGGGGC-AGC
65 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAAGGTT-GTGCTAGC
* * * * ** * ** * *
17786807 AGGATCGATAGCACGCAG-GCGGGACCGGGTTGATCCCCGACTTGTGCATTCTGCCTCTTCGACC
127 GGGATCGACAGCACACAGAGAGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCC
* * **
17786871 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TGCATGTCTA
192 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
* *
17786935 AGCATACGGTGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGAGAGCAGGACCAGT
256 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-C-----C--GACC---
* ** *
17787000 AACAGGATCGGCAGCACGCAGGGGGGTCAAGTC
310 -ACAGGATCGGCAGCACGCAGGGGGATCGGGCC
* * * * *
17787033 GATCCCTGACTTGCGCATTCTGCCTCTCCCACCGGCTGAA-CGCCCGCACGGTCGTTACGTGGGT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGA-CAGCT-AAGCGCCCGCACGCTCGTTTCGTGGGT
* *
17787097 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAAGGTTGTGGCAGCAG
64 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGT----GC--
* *
17787162 GATTGGCAGCGGGATCGATAGCACACAGAGAGGGACCGGGCTGATCCCCGGCTTACGCATTATGC
123 ---T---AGCGGGATCGACAGCACACAGAGAGGGACCGGGCCGATCCCCGGCTTACGCATTATG-
* *
17787227 CTCTCCGACCGGCCTCTCTGGCCGACTGAGCGCCCACACGCT-GATTTCATGGGTTGACTTAGGC
181 C-CT---------CT-TC-GGCCGACTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGC
* *
17787291 ATGCAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
233 ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
*
17787356 AGGGTTCCGACCACAGGATCGGCAGCACGCAGGAGGATCGGGCC
298 AGGGTTCCGACCACAGGATCGGCAGCACGCAGGGGGATCGGGCC
* * * ** * *
17787400 GATCCCCGACATGCCCGTTCTGCCTCTCCGACTAGCTAAGCGCCCGCGTGCCCGTTTTGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGAC-AGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
17787465 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGCTAGCGGG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGCTAGCGGG
* * * *
17787530 ATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGC
130 ATCGACAGCACACAGAGAGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCCGAC
* * * *
17787595 TCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATCCCCAATCTAAGCA
195 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * * * * * * *
17787660 TACAGAGTTCATTCCAAGTCTAATATCAAACCGGACTGAGGGTTGCGGCAATAGGATCGACAGCA
260 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGACCACAGGATCGGCAGCA
** *
17787725 CGTGGGGGGGGA-CGGGCT
325 C--GCAGGGGGATCGGGCC
* * * * * * * *
17787743 GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCTCCCGCACGCTCATTTCATGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGACAG-CTAAGCGCCCGCACGCTCGTTTCGTGGGTT
17787808 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17787843 ATACGGAGTT
Statistics
Matches: 667, Mismatches: 105, Indels: 86
0.78 0.12 0.10
Matches are distributed among these distances:
342 118 0.18
343 90 0.13
344 8 0.01
352 4 0.01
353 92 0.14
354 4 0.01
355 52 0.08
356 2 0.00
358 1 0.00
363 2 0.00
365 19 0.03
366 32 0.05
367 128 0.19
368 2 0.00
371 4 0.01
373 1 0.00
377 2 0.00
378 4 0.01
379 100 0.15
380 2 0.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (341 bp):
GATCCCCGACTTGCGCATTCTGCCTCTCCGACAGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGCTAGCGGGA
TCGACAGCACACAGAGAGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCCGACT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGACCACAGGATCGGCAGCAC
GCAGGGGGATCGGGCC
Found at i:17787633 original size:159 final size:157
Alignment explanation
Indices: 17787315--17787657 Score: 377
Period size: 159 Copynumber: 2.2 Consensus size: 157
17787305 CCCAGTCTAA
* *
17787315 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGACCACAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTCCGACCACAGGATCGACA
* * * *
17787380 GCACGCAGGAGGATCGGGCCGATCCCCGACATGCCCGTTCTGCCTCTCCGACTAGCTAAGCGCCC
66 GCACGCAGGAGGACCGGGCCGATCCCCGACATGCCCATTATGCCTCTCCGACCAGCTAAGCGCCC
* * *
17787445 GCGTGCCCGTTTTGTGGGTTGGCTTAG
131 GCATGCCCGTTTCGTGGGTTGACTTAG
* * ** * *
17787472 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTG-CTAGCGGGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTCCGACCA-CAGGATCG
* * * * * * * *
17787534 ACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAG
63 ACAGCACGC--AGGAGGACCGGGCCGATCCCCGACATGCCCATTATGCCTCTCCGACCAGCTAAG
*
17787599 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
126 CGCCCGCATGCCCGTTTCGTGGGTTGACTTAG
* * *
17787631 GCATACGGAATTCATCCCCAATCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
17787658 CATACAGAGT
Statistics
Matches: 152, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
156 5 0.03
157 52 0.34
158 3 0.02
159 89 0.59
160 3 0.02
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.20
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTCCGACCACAGGATCGACA
GCACGCAGGAGGACCGGGCCGATCCCCGACATGCCCATTATGCCTCTCCGACCAGCTAAGCGCCC
GCATGCCCGTTTCGTGGGTTGACTTAG
Found at i:17787816 original size:184 final size:185
Alignment explanation
Indices: 17787528--17787866 Score: 502
Period size: 184 Copynumber: 1.8 Consensus size: 185
17787518 TGTGCTAGCG
17787528 GGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCG
1 GGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCG
* * * *
17787593 GCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATCCCCA-ATCTAA
66 ACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCAT-CCCATATCTAA
17787657 GCATACAGAGTTCATTCCAAGTCTAATATCAAACCGGACTGAGGGTTGCGGCAATA
130 GCATACAGAGTTCATTCCAAGTCTAATATCAAACCGGACTGAGGGTTGCGGCAATA
** * * *
17787713 GGATCGACAGCACGTGGGGGGGGA-CGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCG
1 GGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCG
* * * * * *
17787777 ACTGAGCTCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 ACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATCCCATATCTAAG
* *
17787842 CATACGGAGTTCATTCCTAGTCTAA
131 CATACAGAGTTCATTCCAAGTCTAA
17787867 GATTTTGAGC
Statistics
Matches: 136, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
183 3 0.02
184 112 0.82
185 21 0.15
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (185 bp):
GGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCG
ACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATCCCATATCTAAG
CATACAGAGTTCATTCCAAGTCTAATATCAAACCGGACTGAGGGTTGCGGCAATA
Found at i:17787845 original size:26 final size:26
Alignment explanation
Indices: 17787815--17787867 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17787805 GTTGGCTTAG
17787815 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17787841 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17787867 G
1 G
17787868 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17788550 original size:26 final size:26
Alignment explanation
Indices: 17788514--17788566 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17788504 GTTGACTTAG
17788514 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17788540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17788566 G
1 G
17788567 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17789026 original size:158 final size:157
Alignment explanation
Indices: 17788540--17789041 Score: 471
Period size: 158 Copynumber: 3.2 Consensus size: 157
17788530 CCCAGTCTAA
* * * ** *
17788540 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACAGAGGGTTACGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTAGCACCAT-GAC
* * * * *
17788604 AGCACGCAGGGGGGACTGGGCCGATCCCCACCCTGCGCATTCTGCCTCTCCGG-TAGCTTGAGCG
64 AGCACGCAGGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGGTTGGC-TAAGCG
* *
17788668 CCCGCACACCCATTTTGTGGGTTGGCTTAG
128 CCAGCACACTCATTTTGTGGGTTGGCTTAG
* * * * *
17788698 GCATAGGGAGTTCATT-CCATGTCTAAGAAACAG-CCAGATCGAGGGTTGTGGCAGCGGGACCA-
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGC---ACCAT
* * * *
17788760 G-CAGCACGCAGAGGGGGACCAGGCCGATCCCCAACTTGCGCATTATGCCTCTCTGGTCGGCTCA
61 GACAGCACGCAG-GGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGGTTGGCT-A
* * * *
17788824 A-CGCCTGCACACTCGTTTCGTGGGTTGACTTAG
124 AGCGCCAGCACACTCATTTTGTGGGTTGGCTTAG
* * * * *
17788857 GCATCCAGAGTTCATTCCCAATCTAAGATCAGACTAGACCGAGGGTTGCGGTAGCATCATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACCA-TGACA
* * ** * *
17788922 GCACGTAGGGGGGACCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCCGGTTGGCTAAGCACC
65 GCACGCAGGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGGTTGGCTAAGCGCC
** * *
17788987 AGCATGCTCATTTTGTGTGATGGCTTAG
130 AGCACACTCATTTTGTGGGTTGGCTTAG
17789015 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17789042 CATACGGAGT
Statistics
Matches: 272, Mismatches: 56, Indels: 32
0.76 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 8 0.03
158 137 0.50
159 115 0.42
160 7 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACCATGACAG
CACGCAGGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGGTTGGCTAAGCGCCA
GCACACTCATTTTGTGGGTTGGCTTAG
Found at i:17789044 original size:26 final size:26
Alignment explanation
Indices: 17789015--17789067 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17789005 GATGGCTTAG
*
17789015 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17789041 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17789067 G
1 G
17789068 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17789267 original size:26 final size:26
Alignment explanation
Indices: 17789217--17789269 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17789207 GTTGGCTTAG
*
17789217 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
17789243 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17789269 G
1 G
17789270 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17789427 original size:196 final size:194
Alignment explanation
Indices: 17789011--17789635 Score: 781
Period size: 195 Copynumber: 3.2 Consensus size: 194
17789001 GTGTGATGGC
*
17789011 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCTATCTAAGATCAGATC
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGA-C
* ** * * * *
17789076 AGATCAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGATAGCATGCAGGGGGGGATCG
65 ----CGGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGATTGGTAGCACGCA-GGGGGGATCG
* * * ** *
17789141 GGCCGAT-CTCTGACTTGT-GCATTCTACCTCTCCGACCGACTGAGCGACCGTACGTTCATTTCA
125 GGTCGATCCTC-GACTT-TCGTATTCTACCTCTCCGGCCG-CTGAGCG-CCGTACACTCGTTTCA
*
17789204 TGGGTTGGC
186 TGGGTTGGT
*
17789213 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
17789278 GGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGATTGGTAGCACGCAGGGGGGATCGGGTCGA
66 GGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGATTGGTAGCACGCAGGGGGGATCGGGTCGA
* *
17789343 TCCTCGACTTTCGTATTCTGCCTCTCCGGCCAGCTGAGTGCCTGTACACTCGTTTCATGGGTTGG
131 TCCTCGACTTTCGTATTCTACCTCTCCGGCC-GCTGAGCGCC-GTACACTCGTTTCATGGGTTGG
17789408 T
194 T
* * *
17789409 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATT-CCAGTCTAAGATCGGACC
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
** * * * * *
17789473 GGATTGAGGTTTGCGACAGTAGGACCAACAGCAGGATTGGTAGCACGCAAGGGGGATTGGGTCGA
66 GGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGATTGGTAGCACGCAGGGGGGATCGGGTCGA
* * * * *
17789538 TCCCCGGC-TTCTGTATTCTACCTCTCCGGCCGGCTTAGCGCCGACACACTCGTTTCGTGGGTTG
131 TCCTCGACTTTC-GTATTCTACCTCTCCGGCC-GCTGAGCGCCG-TACACTCGTTTCATGGGTTG
17789602 GT
193 GT
*
17789604 TTAGGCATACGGAGTTCATTCCATCTCTAAGC
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGC
17789636 CCAAGTCGGA
Statistics
Matches: 379, Mismatches: 38, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
194 4 0.01
195 160 0.42
196 106 0.28
197 47 0.12
201 1 0.00
202 61 0.16
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (194 bp):
TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
GGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGATTGGTAGCACGCAGGGGGGATCGGGTCGA
TCCTCGACTTTCGTATTCTACCTCTCCGGCCGCTGAGCGCCGTACACTCGTTTCATGGGTTGGT
Found at i:17789443 original size:26 final size:25
Alignment explanation
Indices: 17789413--17789464 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17789403 GTTGGTTTAG
*
17789413 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
17789439 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
17789464 G
1 G
17789465 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:17789823 original size:26 final size:26
Alignment explanation
Indices: 17789794--17789844 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17789784 TGACTTAGGT
*
17789794 ATACGGAGTTCA-TCCCTAGTCTAAGC
1 ATACAGAGTTCATTCCC-AGTCTAAGC
17789820 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17789845 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:17790343 original size:26 final size:26
Alignment explanation
Indices: 17790293--17790345 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17790283 GTTGGCTTAG
*
17790293 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17790319 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17790345 G
1 G
17790346 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17790518 original size:26 final size:26
Alignment explanation
Indices: 17790489--17790541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17790479 GTTGACTTAT
*
17790489 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17790515 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17790541 G
1 G
17790542 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17790777 original size:80 final size:76
Alignment explanation
Indices: 17790622--17790769 Score: 224
Period size: 80 Copynumber: 1.9 Consensus size: 76
17790612 TGCAGATTCT
* *
17790622 GCCTCTTCGGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTTCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
17790687 TTCCATGTCTA
66 TTCCATGTCTA
* *
17790698 GCCTCTTTGGTCGGCTAAGCACCCGTACGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
1 GCCTCTTCGGTCGGCTAAGCA-CC---CGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAG
17790763 TTCATTC
62 TTCATTC
17790770 GTTGTCTAAG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
76 19 0.30
77 2 0.03
80 43 0.67
ACGTcount: A:0.15, C:0.28, G:0.28, T:0.28
Consensus pattern (76 bp):
GCCTCTTCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTA
Found at i:17790804 original size:26 final size:26
Alignment explanation
Indices: 17790753--17790805 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17790743 GTTGGCTTAG
*** *
17790753 GCATACGGAGTTCATTCGTTGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17790779 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17790805 G
1 G
17790806 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17791456 original size:159 final size:159
Alignment explanation
Indices: 17791254--17791820 Score: 491
Period size: 159 Copynumber: 3.6 Consensus size: 159
17791244 CGATCTCTGG
* * * * *
17791254 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTATACCTCTTCGGTCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
* * * * **
17791319 ATAGGGAGATCATTCCATGTCTAAGCCCCAGCCTGATCGAGGGTTGTGGCAGTTGGACC-AGCAA
66 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGACGGTTGTGGCAGCGGGACCGA-CAA
*
17791383 CACGCAGAGGGGGATCGAGCCAATCCCCGA
130 CACGCAGAGGGGGACCGAGCCAATCCCCGA
* * * *
17791413 CTTGCGCATTATGCCTCTTCGG-CTTGCTCAGTACCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
1 CTTGCGCATTATACCTCTTCGGTC-GGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGG
* * **
17791477 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGACGGTTGTGGCAGCGGGATCGACGG
65 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGACGGTTGTGGCAGCGGGACCGACAA
* * * * *
17791542 CACGTAGAGGGGGACCGGGCCGATCCCTGG
130 CACGCAGAGGGGGACCGAGCCAATCCCCGA
* * * * *
17791572 CTTGCGCATTATACCTCTTCGGTCGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTATGC
1 CTTGCGCATTATACCTCTTCGGTCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
* * ** * * * * * *
17791637 ATACGGAGTTCATTCCCA-ATCTAAG-ATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
66 ATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGACGGTTGTGGCAGCGGGACCGACA
** * ***
17791700 GTACGCAG-GGGGGA-CTAGGTTGATCCCCCG-
129 ACACGCAGAGGGGGACCGA-GCCAAT-CCCCGA
** * * * * * * * *** *
17791730 CTTATGCATTCTGCCTCTCCGGCCGGCTAAACGCCCGCACATTCGTTTCATGGGTTGGCTTAGGT
1 CTTGCGCATTATACCTCTTCGGTCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
*
17791795 ATACGGAGTTCATTCCATGTCTAAGC
66 ATAGGGAGTTCATTCCATGTCTAAGC
17791821 ATACGAAGTT
Statistics
Matches: 336, Mismatches: 63, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
157 4 0.01
158 84 0.25
159 243 0.72
160 5 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
CTTGCGCATTATACCTCTTCGGTCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGACGGTTGTGGCAGCGGGACCGACAAC
ACGCAGAGGGGGACCGAGCCAATCCCCGA
Found at i:17791825 original size:26 final size:26
Alignment explanation
Indices: 17791795--17791845 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17791785 TGGCTTAGGT
*
17791795 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
17791821 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
17791846 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:17793433 original size:159 final size:159
Alignment explanation
Indices: 17793124--17793725 Score: 522
Period size: 159 Copynumber: 3.8 Consensus size: 159
17793114 TCGAATGTTG
* *
17793124 CGACAGCA-GCAG-GGGGGATCGGGCCGAT-CCTCGACTTACGCATTCTGCCTC-TCTGGCCGGC
1 CGACAGCACGCAGAGGGGGATCGGGCCGATCCCTAG-CTTACGCATTATGCCTCTTC-GGCCGGC
* * * * *
17793185 TGAGCACCCGTACGCCAGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
64 TCAGCACCCGCACGCCTGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * *
17793250 CCAACCGGACTGAGGGTTGTGGCAGCTGGAC
129 CCAACCAGACTAAAGGTTGGGGCAGCGGGAC
* * **
17793281 C-AGCAGCACGTAGAGGGGGATCGGGCCAATCCCTAGCTTACGCATTATGCCTCTTCGGCTTGCT
1 CGA-CAGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTACGCATTATGCCTCTTCGGCCGGCT
* * *
17793345 CAACGCCCGCACGCCTGTTTCGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
65 CAGCACCCGCACGCCTGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* *
17793410 TAGCCAGACTAAAGG-TGAGGGCAGCGGGAC
130 CAACCAGACTAAAGGTTG-GGGCAGCGGGAC
* * * * ** * * **
17793440 CGATAGCACGCATAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTTTTTAGCCGGCTC
1 CGACAGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTACGCATTATGCCTCTTCGGCCGGCTC
* * * **
17793505 AGCACCCGCACG-CTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGAT
66 AGCACCCGCACGCCT-GTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCC
* ** ** * * * *
17793568 CGAACTGGACCGAGGGTTGTGGCAGCAGGAT
129 CCAACCAGACTAAAGGTTGGGGCAGCGGGAC
* * * * * * * *
17793599 CGATAGCATGCAGAGAGGGACCGGGCCGATCCCCAGCTTACACATTCTGCCTC-TCTGGCCGGTT
1 CGACAGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTACGCATTATGCCTCTTC-GGCCGGCT
* * * * * * *
17793663 GAGCGCCCGTAAG-CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CAGCACCCGCACGCCT-GTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17793726 ATATGGAGTT
Statistics
Matches: 360, Mismatches: 73, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 6 0.02
158 11 0.03
159 330 0.92
160 12 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGACAGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTACGCATTATGCCTCTTCGGCCGGCTC
AGCACCCGCACGCCTGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AACCAGACTAAAGGTTGGGGCAGCGGGAC
Found at i:17793591 original size:318 final size:318
Alignment explanation
Indices: 17793136--17793725 Score: 722
Period size: 318 Copynumber: 1.9 Consensus size: 318
17793126 ACAGCAGCAG
* * * * * *
17793136 GGGGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCC
1 GGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCTAGCCGGCTCAGCACCCGCACGCC
* * * * * *
17793201 AGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGG
66 AGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCCAACCGGACCGAGGG
* * * * * *
17793266 TTGTGGCAGCTGGACC-AGCAGCACGTAGAGGGGGATCGGGCCAATCCCTAGCTTACGCATTATG
131 TTGTGGCAGCAGGACCGA-CAGCACGCAGAGAGGGACCGGGCCAATCCCCAGCTTACACATTATG
** * * *
17793330 CCTCT-TCGGCTTGCTCAACGCCCGCACGC-CTGTTTCGTGGGTTGTCTTAGGCATAGGGAGTTC
195 CCTCTCT-GGCCGGCTCAACGCCCGCAAGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
17793393 ATTCCATGTCTAAGCCCTAGCCAGACTAAAGGTGAGGGCAGCGGGACCGATAGCACGCATA
258 ATTCCATGTCTAAGCCCTAGCCAGACTAAAGGTGAGGGCAGCGGGACCGATAGCACGCATA
* * * * *
17793454 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTTTTTAGCCGGCTCAGCACCCGCACGCT
1 GGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCTAGCCGGCTCAGCACCCGCACGC-
* * * *
17793519 C-GTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCGAACTGGACCGAG
65 CAGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGACCCAACCGGACCGAG
* * * * *
17793582 GGTTGTGGCAGCAGGATCGATAGCATGCAGAGAGGGACCGGGCCGATCCCCAGCTTACACATTCT
129 GGTTGTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGGGCCAATCCCCAGCTTACACATTAT
* * * * *
17793647 GCCTCTCTGGCCGGTTGAGCGCCCGTAAGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCA
194 GCCTCTCTGGCCGGCTCAACGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
17793712 TTCCATGTCTAAGC
259 TTCCATGTCTAAGC
17793726 ATATGGAGTT
Statistics
Matches: 225, Mismatches: 42, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
318 218 0.97
319 7 0.03
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (318 bp):
GGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCTAGCCGGCTCAGCACCCGCACGCC
AGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCCAACCGGACCGAGGG
TTGTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGGGCCAATCCCCAGCTTACACATTATGC
CTCTCTGGCCGGCTCAACGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCCCTAGCCAGACTAAAGGTGAGGGCAGCGGGACCGATAGCACGCATA
Found at i:17793734 original size:26 final size:26
Alignment explanation
Indices: 17793698--17793750 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17793688 GTTGGCTTAG
*
17793698 GCATACGGAGTTC-ATTCCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
*
17793724 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
17793750 G
1 G
17793751 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:17794432 original size:26 final size:26
Alignment explanation
Indices: 17794403--17794455 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17794393 GTTGACTTAG
*
17794403 GCATAC-GTAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
*
17794429 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17794455 G
1 G
17794456 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17794936 original size:26 final size:26
Alignment explanation
Indices: 17794906--17794958 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17794896 GTTCGCTTAG
*
17794906 GCATAAGGAGTTCATT-CCATGTCTAA
1 GCATAAGAAGTTCATTCCCA-GTCTAA
*
17794932 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
17794958 G
1 G
17794959 ATCAGACCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:17795228 original size:171 final size:163
Alignment explanation
Indices: 17794932--17795777 Score: 617
Period size: 159 Copynumber: 5.2 Consensus size: 163
17794922 CCATGTCTAA
* * * * *
17794932 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGCACCGAGGGTTGGGGCAGCAATACCAGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAG-CCGAACCGAGGGTTGTGGCAG----A-CGGCA
* * * *
17794997 GTAGGATCGACAGCACGCA-AGGAGGGACCAGG-TCGATCCCCGGCTTGCACATTCTGCCTCTCC
59 G-CGGATCGACAGCACGCAGAGG-GGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTTC
* * * *
17795060 GGTCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
121 AGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
17795103 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTGGCAACAAGACCGGCA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGCCGAACCGAGGGTTGTGG---C-AGA-CGGCA
* * * *
17795168 GCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCAGACTTGCGCATTATGCCTCTCCAG
59 GC-GGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCAG
* * * ** * *
17795233 CCGGTTGAGTGCCCGCACGCTCATTTTGTAGGTTGACTTAG
123 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * ** *
17795274 GCATACGGATTTCATCCCCAGTCTAAGACC-G--G-A-C-TGGGCTGAGGTTTG-CGGCAGTAGG
1 GCATACGGAGTTCAT-TCCAGTCTAAGACCAGCCGAACCGAGGGTTGTGG-CAGACGGCAG-CGG
* * * * ** ** **
17795332 ATCGGCAGCACGCAGGGGGGGATCGGGCTAATCCCCGGCTTATGCATTCTGCCTCTTTGGTTGGC
63 ATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCCGGC
* * * * *
17795397 TTAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
128 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
17795433 GTATAGGGAGTTCATTCCATGTCTAA-ACCCCAGCTGAACCGAGGGTTGTGGCAG-CGGGA-C--
1 GCATACGGAGTTCATTCCA-GTCTAAGA--CCAGCCGAACCGAGGGTTGTGGCAGACGGCAGCGG
* * * *
17795493 -T-GACAGCACGCAGAGGGGGACCGGCCTGATCCCCGACTTGCGCATTGTGCCTTTTCAGCCGGC
63 ATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCCGGC
* * * *
17795556 TCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAT
128 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
17795592 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGC--A--GCA--GGA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAG-CCGAACCGAGGGTTGTGGCAGACGGCAGCGGA
* * *
17795651 TTGACAGCACGCAGGGGGGGACCGGG-TCGATCCCCGGCTTGCGCGTTCTGCCTCTTC-GACCGG
64 TCGACAGCACGCAGAGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTTCAG-CCGG
*
17795714 -TCGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
127 CT-GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
17795751 GCATGCGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
17795778 CATACGGAGC
Statistics
Matches: 537, Mismatches: 106, Indels: 76
0.75 0.15 0.11
Matches are distributed among these distances:
156 2 0.00
158 14 0.03
159 321 0.60
160 7 0.01
161 2 0.00
163 1 0.00
164 8 0.01
165 6 0.01
166 8 0.01
167 1 0.00
169 1 0.00
170 5 0.01
171 148 0.28
172 10 0.02
174 1 0.00
175 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (163 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGCCGAACCGAGGGTTGTGGCAGACGGCAGCGGATC
GACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17795661 original size:318 final size:324
Alignment explanation
Indices: 17794994--17795776 Score: 841
Period size: 318 Copynumber: 2.4 Consensus size: 324
17794984 AGCAATACCA
* * * * * * * *
17794994 GCAGTAGGATCGACAGCACGCAAGGAGGGACCAGGTCGATCCCCGGCTTGCACATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGGACCGGGTCAATCCCCGGCTTACGCATTCTGCCTCTT
** * * * * *
17795059 CGGTCAG-CTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 CGACCGGTC-GAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* *
17795123 GTCTAAGCCCCAGCCGAACTGAGGGTTGTGGCAACAAGACCGGCAGCGGGATCGACAGCACGCAG
130 GTCTAAACCCCAGCCGAACCGAGGGTTGTGG--ACAAGA-CGGCAGC--G-TCGACAGCACGCAG
* * * **
17795188 AGGGGGACCGGGCTGATCCCAGACTTGCGCATTATGCCTCTCCAGCCGGTTGAGTGCCCGCACGC
189 AGGGGGACCGGCCTGATCCCAGACTTGCGCATTATGCCTCTCCAGCCGGCTCAGCACCCGCACGC
** * * * *
17795253 TCATTTTGTAGGTTGACTTAGGCATACGGATTTCATCCCCAGTCTAAGACCGGACTGGGCTGAGG
254 TCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGACCAGACTGGACCGAGG
*
17795318 TTTGCG
319 GTTGCG
* * * *
17795324 GCAGTAGGATCGGCAGCACGCAGGGGGGGATCGGG-CTAATCCCCGGCTTATGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGCAGGGGGGGACCGGGTC-AATCCCCGGCTTACGCATTCTGCCTCT
* *** * ** * * *
17795388 TTGGTTGG-CTTAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCA
65 TCGACCGGTC-GAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* *
17795452 TGTCTAAACCCCAGCTGAACCGAGGGTTGTGG-C-AG-CGGGA-C-T-GACAGCACGCAGAGGGG
129 TGTCTAAACCCCAGCCGAACCGAGGGTTGTGGACAAGACGGCAGCGTCGACAGCACGCAGAGGGG
* * * * *
17795511 GACCGGCCTGATCCCCGACTTGCGCATTGTGCCTTTTCAGCCGGCTCAGCACCCGCACGCTCGTT
194 GACCGGCCTGATCCCAGACTTGCGCATTATGCCTCTCCAGCCGGCTCAGCACCCGCACGCTCATT
* * * *
17795576 TCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTG
259 TCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGACCAGACT-GGACCGAGGGTTG
*
17795640 TG
323 CG
* * * *
17795642 GCAGCAGGATTGACAGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCGTTCTGCCTCTT
1 GCAGCAGGATCGACAGCACGCAGGGGGGGACCGGGTCAATCCCCGGCTTACGCATTCTGCCTCTT
* *
17795707 CGACCGGTCGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT-GCGAAGTTCATTCCAT
66 CGACCGGTCGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCAT
17795771 GTCTAA
130 GTCTAA
17795777 GCATACGGAG
Statistics
Matches: 381, Mismatches: 67, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
317 2 0.01
318 233 0.61
319 3 0.01
323 1 0.00
324 4 0.01
326 2 0.01
327 1 0.00
329 1 0.00
330 134 0.35
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (324 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGGACCGGGTCAATCCCCGGCTTACGCATTCTGCCTCTT
CGACCGGTCGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
TCTAAACCCCAGCCGAACCGAGGGTTGTGGACAAGACGGCAGCGTCGACAGCACGCAGAGGGGGA
CCGGCCTGATCCCAGACTTGCGCATTATGCCTCTCCAGCCGGCTCAGCACCCGCACGCTCATTTC
ATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGACCAGACTGGACCGAGGGTTGCG
Found at i:17796519 original size:26 final size:26
Alignment explanation
Indices: 17796483--17796535 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17796473 CTTGGCTTAG
17796483 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
*
17796509 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
17796535 G
1 G
17796536 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:17797078 original size:722 final size:725
Alignment explanation
Indices: 17795678--17797259 Score: 2307
Period size: 722 Copynumber: 2.2 Consensus size: 725
17795668 GGGACCGGGT
* * * * ** * * *
17795678 CGATCCCCGGCTTGCGCGTTCTGCCTCTTCGACCGG-TCGAGCACCCGCACGCTCGTTTCATGGG
1 CGATCCCCGGCTTACGCATCCTGCCTCTTTGGTCGGCT-GAGCGCCCGCACGCTTGTTTCGTGGG
* * * *
17795742 TTGGCTTAGGCATGCGAAGTTCATTCCATGTCTAAGCATACGGAGCTCATTTACAGTCTAAGATT
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATT
* **
17795807 TTGAGCCACGGTGCAAATGCTGGGGTCGGGCATGTGCTGGTGCCGCATTTTTTTTGCACGGGGCA
130 TTGAGCCACGGTGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCACACGGGGCA
* *
17795872 CCATCCTGGAGCATCGTCAGAGCATCGCTGGAAAGCCTAACCGACGGCATTGGGGGTTCCGACGA
195 CCATCCTGGAGCATCGCCAGA-CA---C--G-AAGCCTAACCGACGGCATTGGGGGTTCCAACGA
* ** * *
17795937 TTGGGGGGCCGGGGGGTGTGCGCATATGATGTACGATGGGTACTGGTACTAGGCCCTTATATTGG
253 TTGGGGGACCAAGGGATGTGCGCACATGATGTACGATGGGTACTGGTACTAGGCCCTTATATTGG
* *
17796002 CCCTCTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGG
318 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGG
*
17796067 TGTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGCTCACAAAATAT
383 TGTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATAT
*
17796132 TCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCT
448 TCTCCACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCT
* * *
17796197 TCCAAATTTTGGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCTCAAACCATAAAAAGTTTC
513 ACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCAAACCATAAAAAGTTTC
*
17796262 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGAC
578 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGAC
** * * **
17796327 CATTGTTTGAATTTACACTCCATAAAAATGGCATTGGCATGGCAGAAATGTGAAGATGTGCTTGA
643 CATTGTTTGAATTTACAAGCCACAAAAATGGCATTGGCATGGCAAAAATAAGAAGATGTGCTTGA
* *
17796392 ACCCATCTACCACTCGTC
708 ACCCACCTACCACCCGTC
* *
17796410 CGATCCCCGGCTTACGCATCCTGCCTCTTTGGTCGGCTGAGCGCCCGCACGCTTGTTTTGTGGCT
1 CGATCCCCGGCTTACGCATCCTGCCTCTTTGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGT
*
17796475 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATTT
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATTT
* * *
17796540 TGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCACCCGGGGCAC
131 TGAGCCACGGTGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCACACGGGGCAC
* *
17796605 CATCGTCGGAGCATCGCCA-A-A-G-AGCCTAACCGGCGGCATTGGGGGTTCCAACGATTGGGGG
196 CATCCT-GGAGCATCGCCAGACACGAAGCCTAACCGACGGCATTGGGGGTTCCAACGATTGGGGG
** * *
17796666 ACCAAGGGATGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
260 ACCAAGGGATGTGCGCACATGATGTACGATGGGTACTGGTACTAGGCCCTTATATTGGCCCCCTA
* * *
17796731 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
325 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTGTGCTG
* *
17796796 CCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATCTTCTCCAC
390 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATATTCTCCAC
*
17796861 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAAT
455 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAAT
* * *
17796926 TTGGGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATC
520 TTGGGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATC
* *
17796991 ATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATT-TT
585 ATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTT
* *
17797055 ATGTATTTACAAGCCACAAAAATGGCATTGGCATGGCAAAAATAAGAAGATTTGCTTGAACCCAC
650 -TGAATTTACAAGCCACAAAAATGGCATTGGCATGGCAAAAATAAGAAGATGTGCTTGAACCCAC
*
17797120 CTACCACCCGTT
714 CTACCACCCGTC
* * * * * * *
17797132 TGATCCCCAGCTTCCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCAGCATGCTTATTTCGTGGGT
1 CGATCCCCGGCTTACGCATCCTGCCTCTTTGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGT
** * * *
17797197 TGGCTTAGTTATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTTATTC-CTAGTCTAAGAT
66 TGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCAC-AGTCTAAGAT
17797260 CGGATTGGAC
Statistics
Matches: 765, Mismatches: 80, Indels: 20
0.88 0.09 0.02
Matches are distributed among these distances:
721 3 0.00
722 568 0.74
723 3 0.00
724 1 0.00
730 1 0.00
732 177 0.23
733 12 0.02
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (725 bp):
CGATCCCCGGCTTACGCATCCTGCCTCTTTGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATTT
TGAGCCACGGTGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCACACGGGGCAC
CATCCTGGAGCATCGCCAGACACGAAGCCTAACCGACGGCATTGGGGGTTCCAACGATTGGGGGA
CCAAGGGATGTGCGCACATGATGTACGATGGGTACTGGTACTAGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTGTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATATTCTCCACT
TCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATT
TGGGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTTT
GAATTTACAAGCCACAAAAATGGCATTGGCATGGCAAAAATAAGAAGATGTGCTTGAACCCACCT
ACCACCCGTC
Found at i:17797531 original size:159 final size:157
Alignment explanation
Indices: 17797268--17797563 Score: 344
Period size: 159 Copynumber: 1.9 Consensus size: 157
17797258 ATCGGATTGG
* ** *
17797268 ACCGAGGGTTACGGCAGAAGGATCGACAGCACGCAGGGGGATCGGGTTGATCCCCGGCTTGCGCA
1 ACCGAGGGTTACGGCAGAAGGATCGACAGCACGCAGGGGGATCAGGCCGATCCCCGACTTGCGCA
* * * * * * * *
17797333 TTCTGCCTCTCCGACCGGTTGAGCACCTGCACATCCATTTCTTGGGTTGGCTTAGGCATAGGGAG
66 TTATGCCTCTCCGACCGGCTCAGCACCCGCACATCCATTTCATGGGTTGACTTAGGCATACGAAG
17797398 TTCATTCAATGTCTAAGCCCCAGCTGA
131 TTCATTCAATGTCTAAGCCCCAGCTGA
** ** * *
17797425 ACCGAGGGTTGTGGCAGTGGGATCGATAGCATGCAGAAGGGGATCAGGCCGATCCCCGACTTGCG
1 ACCGAGGGTTACGGCAGAAGGATCGACAGCACGCAG--GGGGATCAGGCCGATCCCCGACTTGCG
** * *
17797490 CATTATGCCTCTTTGACCGGCTCAGCGCCCG--CATGCTCATTTCATGGGTTGACTTATGCATAC
64 CATTATGCCTCTCCGACCGGCTCAGCACCCGCACAT-C-CATTTCATGGGTTGACTTAGGCATAC
17797553 GAAGTTCATTC
127 GAAGTTCATTC
17797564 CCAGTCTAAG
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
157 33 0.29
158 1 0.01
159 79 0.70
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
ACCGAGGGTTACGGCAGAAGGATCGACAGCACGCAGGGGGATCAGGCCGATCCCCGACTTGCGCA
TTATGCCTCTCCGACCGGCTCAGCACCCGCACATCCATTTCATGGGTTGACTTAGGCATACGAAG
TTCATTCAATGTCTAAGCCCCAGCTGA
Found at i:17797593 original size:159 final size:156
Alignment explanation
Indices: 17797231--17797730 Score: 382
Period size: 157 Copynumber: 3.2 Consensus size: 156
17797221 CCCAGTCTAA
* * * *
17797231 GCATACGAAGTTTATTCCTAGTCTAAGATCGGATTGGACCGAGGGTTACGGCAGAAGGATCGACA
1 GCATACGAAGTTCATTCCAAGTCTAAGATCAGA-TGGACCGAGGGTTGCGGCAGAAGGATCGACA
* ** * * * * *
17797296 GCACGCAGGGGGATCGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACCT
65 GCACGCAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCC
* *
17797361 GCACATCCATTTCTTGGGTTGGCTTAG
130 GCACATCCATTTCATGGGTTGACTTAG
* * ** * * * ** *
17797388 GCATAGGGAGTTCATT-CAATGTCTAAGCCCCAGCTGAACCGAGGGTTGTGGCAGTGGGATCGAT
1 GCATACGAAGTTCATTCCAA-GTCTAAG-ATCAGATGGACCGAGGGTTGCGGCAGAAGGATCGAC
* ** *
17797452 AGCATGCAGAAGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTTTGACCGGCTCAGCG
64 AGCACGCAG--GGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
*
17797517 CCCG--CATGCTCATTTCATGGGTTGACTTAT
127 CCCGCACAT-C-CATTTCATGGGTTGACTTAG
* * ** *
17797547 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGAAGTTCATTCCAAGTCTAAGATCAGAT-GGACCGAGGGTTGCGGCAGAAGGATCGACA
* * * *** * * * * * * *
17797612 GCATGTAGGGGGGA-CCGGTTAATCCGCAACTTGCGTATTCTGCCTCTCC-AGCTGGCTGAGCGC
65 GCACGCA-GGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGA-CCGGCTCAGCAC
* * * * *
17797675 CCGTAC-GCTCGTTTCTTGGGTTGGCTTAG
128 CCGCACATC-CATTTCATGGGTTGACTTAG
*
17797704 GCATACGGAGTTCATTCCAAGTCTAAG
1 GCATACGAAGTTCATTCCAAGTCTAAG
17797731 CATACGGAAT
Statistics
Matches: 268, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 136 0.51
158 12 0.04
159 114 0.43
160 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCAAGTCTAAGATCAGATGGACCGAGGGTTGCGGCAGAAGGATCGACAG
CACGCAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCG
CACATCCATTTCATGGGTTGACTTAG
Found at i:17797733 original size:26 final size:26
Alignment explanation
Indices: 17797704--17797756 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17797694 GTTGGCTTAG
*
17797704 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAATTCATTCCAAGTCTAA
*
17797730 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCAAGTCTAA
17797756 G
1 G
17797757 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCAAGTCTAA
Found at i:17804386 original size:26 final size:26
Alignment explanation
Indices: 17804338--17804388 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17804328 TGACTTAGGA
* *
17804338 ATACAGAGTTCATCCTCAGTCTAAGC
1 ATACAAAGTTCATCCTCAATCTAAGC
17804364 ATACAAAGTTCATTCC-CAATCTAAG
1 ATACAAAGTTCA-TCCTCAATCTAAG
17804389 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.27
Consensus pattern (26 bp):
ATACAAAGTTCATCCTCAATCTAAGC
Done.