Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 156 of 402
Found at i:17804832 original size:160 final size:157
Alignment explanation
Indices: 17804362--17804856 Score: 436
Period size: 160 Copynumber: 3.1 Consensus size: 157
17804352 CTCAGTCTAA
* * * * * *
17804362 GCATACAAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGCTACGCCAACAGGATTGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCG-CAGCAGGATCGACA
* * * ** * * **
17804427 GCACGCAGGGGGGATCGAGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
65 GCACGCGGGGGGGACCGAGCCGATCCCCGGCTTAAGCATTATGCCTCTCCGGCCGACTGAGCGCC
* * *
17804492 CGTACGCCCGTTTCGTGGCTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * ** ** * **
17804520 GCAAAGGGAGTTC-TTTCCATGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGGCAGTGGGATCGA
1 GCATACAGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACCGAGGGTTG-CGCAGCAGGATCGA
* * * * * *
17804583 CAGCCCGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCAGC
63 CAGCACGC-GGGGGGGACCGAGCCGATCCCCGGCTTAAGCATTATGCCTCTCCGGCCGACTGAGC
* * * * * *
17804648 ACCCACACACTTGTTTTGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17804679 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCTGGATCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACC-GGACCGAGGGTTGC-GCAGCAGGATCGAC
* * * * *
17804744 AGCATGCGGGGGGGGACCGAGCCGATCCTCGGCTTAAGCATTTTGCCTCTCTGGCCGACTGAGTG
64 AGCACGC-GGGGGGGACCGAGCCGATCCCCGGCTTAAGCATTATGCCTCTCCGGCCGACTGAGCG
*
17804809 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
17804839 GTATACGGAGTTCTTTCC
1 GCATACAGAGTTCATTCC
17804857 ATGTTAAAGC
Statistics
Matches: 253, Mismatches: 76, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
157 5 0.02
158 44 0.17
159 86 0.34
160 118 0.47
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGCAGCAGGATCGACAG
CACGCGGGGGGGACCGAGCCGATCCCCGGCTTAAGCATTATGCCTCTCCGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17805225 original size:26 final size:26
Alignment explanation
Indices: 17805195--17805245 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17805185 TTGACTTAGG
17805195 CATACGAAGTTCATCCCCAATCTAAC
1 CATACGAAGTTCATCCCCAATCTAAC
* * *
17805221 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATCCCCAATCTAA
17805246 GATCAGATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTAAC
Found at i:17805246 original size:355 final size:344
Alignment explanation
Indices: 17804558--17805428 Score: 810
Period size: 355 Copynumber: 2.5 Consensus size: 344
17804548 CCCAGCCAAA
** * * * ** * *
17804558 CCGAGGGTTGTGGCAGTGGGATCGACAGCCCGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGC
1 CCGAGGGTTGCAGCAGTAGGATCGACAGCACACAG-GGGGGACCGGGCCGATCCCTAGATTGCGC
* * * * ** ** * * *
17804623 ATTATGCCTCTCCGA-CCGACTCAGCACCC-ACACACTTGTTTTGTGGGTTGACTTAGGCATACA
65 ATTCTGCCTCTCC-ATCCGGCTGAGCACCCGA-ACGCTCATTTCATAGGTTGGCTTAGGCATACG
* ** * * * *
17804686 GAGTTCATTCCCA-ATCTAAG-ATCAGACCTGGATCGAGGGTTG-CAGCAGCAGGATCGACAGCA
128 GAGTTCATT-CCATGTCTAAGCCCCAG-CC-GGACCGAGGGTTGTC-GTAGCAGGACCGGCAGCA
* * * * * * ** * * *
17804748 TGCGGGGGGGGACCGAGCCGATCCTCGGCTTAAGCATTTTGCCTCTCTGGCCGACTGAGTGCCCG
189 CGCAGAGAGGGATCGGGTTGATCCCCGGCTTAAGCATTATGCCTCTCTGGCCGACTGAGCGCCCG
* * * ** * * *
17804813 CACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCTTTCCATGTTAAAGCATGCGGAGTTC
254 CACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCTCCCCATGCTAAACCATACGGAGTTC
17804878 ACTCCCAGTCTAAGATCAGACCGGA-
319 ACTCCCAGTCTAAGATCAGACCGGAC
* *
17804903 CTGAGGGTTGCGGCAGTAGGACCAATAGCAGGATCGGCAGCACACAGGGGGGACCGGGCCGAT-C
1 CCGAGGGTTGCAGCAGTAGG----AT--C--GA----CAGCACACAGGGGGGACCGGGCCGATCC
* * * *
17804967 CTCGACTTGTGCATTCTGCCTCTCCGGT-CGGCTGAGCACCCGAACGCTCGTTTCATAGGTTGGC
54 CTAGA-TTGCGCATTCTGCCTCTCC-ATCCGGCTGAGCACCCGAACGCTCATTTCATAGGTTGGC
* *
17805031 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTCGTAGCAGGACC
117 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTCGTAGCAGGACC
* ** *
17805096 GGCAGCACGCAGAGAGGGATCGGGTTGATCCCCGGCTTATGCATTATGCCTCATC-GGTTGGCTG
182 GGCAGCACGCAGAGAGGGATCGGGTTGATCCCCGGCTTAAGCATTATGCCTC-TCTGGCCGACTG
*
17805160 AGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAAT-CT-AACCA
246 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTC-TCCCC-ATGCTAAACCA
* **
17805223 TACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACC
309 TACGGAGTTCACTCCCAGTCTAAGATCAGACCGGA-C
* *
17805260 CCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCTAGATTGCGCA
1 CCGAGGGTTGCAGCAGTAGGATCGACAGCACACAGGGGGGACCGGGCCGATCCCTAGATTGCGCA
* * ** * *
17805325 TTCTGCCTCTCCATCCGGCTGAGCACCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATAGGGAG
66 TTCTGCCTCTCCATCCGGCTGAGCACCCGAACGCTCATTTCATAGGTTGGCTTAGGCATACGGAG
17805390 TTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
131 TTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
17805429 GGCAGTGGGA
Statistics
Matches: 430, Mismatches: 71, Indels: 50
0.78 0.13 0.09
Matches are distributed among these distances:
344 1 0.00
345 139 0.32
346 5 0.01
349 4 0.01
351 2 0.00
353 4 0.01
355 151 0.35
356 92 0.21
357 32 0.07
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (344 bp):
CCGAGGGTTGCAGCAGTAGGATCGACAGCACACAGGGGGGACCGGGCCGATCCCTAGATTGCGCA
TTCTGCCTCTCCATCCGGCTGAGCACCCGAACGCTCATTTCATAGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTCGTAGCAGGACCGGCAGCACGCAGAG
AGGGATCGGGTTGATCCCCGGCTTAAGCATTATGCCTCTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATACGAAGTTCTCCCCATGCTAAACCATACGGAGTTCACTCCCA
GTCTAAGATCAGACCGGAC
Found at i:17805396 original size:345 final size:345
Alignment explanation
Indices: 17804557--17805477 Score: 914
Period size: 345 Copynumber: 2.6 Consensus size: 345
17804547 CCCCAGCCAA
* * * ** * *
17804557 ACCGAGGGTTGTGGCAGTGGGATCGACAGCCCGCAGAGGGGGACCGGGCCGATCCCCGGCTTACG
1 ACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCTAGATTGCG
* * * * * * * *
17804622 CATTATGCCTCTCCGA-CCGACTCAGCACCCACACACTTGTTTTGTGGGTTGACTTAGGCATACA
65 CATTCTGCCTCTCCGATCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACG
* ** *
17804686 GAGTTCATTCCCA-ATCTAAG-ATCAGACCTGGATCGAGGGTTG-CAGCAGCAGGATCGACAGCA
130 GAGTTCATT-CCATGTCTAAGCCCCAG-CC-GGATCGAGGGTTGTCAGCAGCAGGACCGACAGCA
* * * * * * *
17804748 TGCGGGGGGGGACCGAGCCGATCCTCGGCTTAAGCATTTTGCCTCTCTGGCCGACTGAGTGCCCG
192 CGCAGAGAGGGACCGAGCCGATCCCCGGCTTAAGCATTATGCCTCTCTGGCCGACTGAGCGCCCG
* * * ** * * *
17804813 CACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCTTTCCATGTTAAAGCATGCGGAGTTC
257 CACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCTCCCCATGCTAAACCATACGGAGTTC
17804878 ACTCCCAGTCTAAGATCAGACCGG
322 ACTCCCAGTCTAAGATCAGACCGG
* *
17804902 ACTGAGGGTTGCGGCAGTAGGACCAATAGCAGGATCGGCAGCACACAGGGGGGACCGGGCCGAT-
1 ACCGAGGGTTGCGGCAGTAGG----AT--C--GA----CAGCACGCAGGGGGGACCGGGCCGATC
* * * * ** *
17804966 CCTCGACTTGTGCATTCTGCCTCTCCGGT-CGGCTGAGCACCCGAACGCTCGTTTCATAGGTTGG
54 CCTAGA-TTGCGCATTCTGCCTCTCCGATCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGG
* *
17805030 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTC-GTAGCAGGA
118 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTCAGCAGCAGGA
* * * ** * ** *
17805094 CCGGCAGCACGCAGAGAGGGATCGGGTTGATCCCCGGCTTATGCATTATGCCTCATC-GGTTGGC
183 CCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTTAAGCATTATGCCTC-TCTGGCCGAC
*
17805158 TGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAAT-CT-AAC
247 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTC-TCCCC-ATGCTAAAC
* **
17805221 CATACGGAGTTCATTCCCAGTCTAAGATCAGATTGG
310 CATACGGAGTTCACTCCCAGTCTAAGATCAGACCGG
* *
17805257 ACCCCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCTAGATTGC
1 A--CCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTAGATTGC
* * *
17805322 GCATTCTGCCTCTCC-ATCCGGCTGAGCACCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATAG
64 GCATTCTGCCTCTCCGATCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAC
* * ** *
17805386 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT-GGCAGTGGGATCGACAGCACG
129 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTCAGCAGCAGGACCGACAGCACG
* * *
17805450 CAG-GGGGGACCGGGCCGATCCCCAGCTT
194 CAGAGAGGGACCGAGCCGATCCCCGGCTT
17805478 GCGCATTCTA
Statistics
Matches: 468, Mismatches: 83, Indels: 51
0.78 0.14 0.08
Matches are distributed among these distances:
344 21 0.04
345 158 0.34
346 5 0.01
349 4 0.01
351 2 0.00
353 4 0.01
355 151 0.32
356 92 0.20
357 31 0.07
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (345 bp):
ACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTAGATTGCGC
ATTCTGCCTCTCCGATCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTCAGCAGCAGGACCGACAGCACGCA
GAGAGGGACCGAGCCGATCCCCGGCTTAAGCATTATGCCTCTCTGGCCGACTGAGCGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCTCCCCATGCTAAACCATACGGAGTTCACTC
CCAGTCTAAGATCAGACCGG
Found at i:17805891 original size:158 final size:159
Alignment explanation
Indices: 17805494--17805894 Score: 384
Period size: 158 Copynumber: 2.5 Consensus size: 159
17805484 TCTACCAGAG
* * * * *
17805494 TTCTGCCTCTCCGACCGGCTGAG--TGCTCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGG
1 TTCTGCCTCTCCGATCGGTTGAGCAT-C-CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * *** *
17805557 AGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAG
64 AGTTCATTCCATGTCTAAGCCCGAGCCGGACCGAGGGTTGCGACAGCAAGACCAACAGCACG-AG
* * *
17805622 AGGGGGGATCAGGCCGATCCCCAACTTGCGCA
128 AGGGGGGACCAGGCCAATCCCCAACTTGCCCA
* * * * * * *
17805654 ATATGCCTCTTCGATCGGCTT-AGCACCCACACGCTCGTTTCATGGGTTGAG-TTATGCATACGG
1 TTCTGCCTCTCCGATCGG-TTGAGCATCCGCACGCTCGTTTCGTGGGTTG-GCTTAGGCATACGG
* ** *
17805717 AGTTCATTCTGA-GTCTAAGATCG-GACCGGACCGAGGGTTGCGACAGCAAGATCAACAGCACG-
64 AGTTCATTC-CATGTCTAAGCCCGAG-CCGGACCGAGGGTTGCGACAGCAAGACCAACAGCACGA
* * * ***
17805779 TAGGGGGGACCGGGTCAATCCCTGGCTTGCCCA
127 GAGGGGGGACCAGGCCAATCCCCAACTTGCCCA
*
17805812 TTCTGCCTCTCCGATCGGTTGAGCATCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAG
1 TTCTGCCTCTCCGATCGGTTGAGCATCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
17805877 TTCATTCCATGTCTAAGC
66 TTCATTCCATGTCTAAGC
17805895 ATATGGAGTT
Statistics
Matches: 189, Mismatches: 43, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.02
158 90 0.48
159 1 0.01
160 90 0.48
161 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TTCTGCCTCTCCGATCGGTTGAGCATCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCGAGCCGGACCGAGGGTTGCGACAGCAAGACCAACAGCACGAGAGG
GGGGACCAGGCCAATCCCCAACTTGCCCA
Found at i:17805917 original size:26 final size:26
Alignment explanation
Indices: 17805867--17805919 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17805857 GTTGGCTTAG
*
17805867 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17805893 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17805919 G
1 G
17805920 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17807230 original size:159 final size:159
Alignment explanation
Indices: 17806614--17807433 Score: 680
Period size: 159 Copynumber: 5.2 Consensus size: 159
17806604 CCCAGTCTAA
* * * * *
17806614 GCATATGGAGTTCATTCCCA-GTCCAAG-ATCAGA-CTGGACCGAGGGTGGCGGCAGTAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCG
* * *
17806676 GCAGCACGCAG-GGGGGACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTCC-AACGGCTGAG
64 ACAGCACGCAGAGGGGGACCGGGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * *
17806739 CACCCGCACACCCGTTTCGTGGGTTGGCTTAG
128 CGCCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * * * *
17806771 GCATAGGGGGTTCATTCCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *
17806835 AGCATGCAGA-GGGGACCGGATCGGTCCCCGACTTGCGCATTATGCCTTTCCGGCCAGTTCAGCG
66 AGCACGCAGAGGGGGACCGGGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * *
17806899 CCCACACGCTCATTTCGTGGGTTGACTTAG
130 CCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * * * * * *
17806929 GCATACGAAGTTCATTTCCA-ATCTCAG-ATCGGATCGGA-CGAAGGGTTGCGACAGTAGGATTG
1 GCATACGGAGTTCA-TTCCATGTCTAAGCACCAGATCGGACCG-AGGGTTGCGGCAGCAGGATCG
* * ** ** * * * *
17806991 ACAGCATGTA-AGGGGGACTAGACCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCTGGCTGAG
64 ACAGCACGCAGAGGGGGACCGGGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
** *
17807055 CGCCCATACACCCATTTCGTGGGTTGGCTTAG
128 CGCCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * * * * * *
17807087 GCATAGGGAGTTCTTTCCATGTCTAAGCCCCAG-TCAGACCGATGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATC-GA
* * * * * * *
17807150 TAGCACGCAGAGGGGGACCGGGCCAATCCTCGGCTTGTGCATTATGCCTCTCCGACCGGTTCAGC
65 CAGCACGCAGAGGGGGACCGGGTCGATCC-CGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
17807215 GCCCGCACACTCATTTCATGGGTTGACTTAG
129 GCCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * *
17807246 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * **
17807309 TAGCACGCAGGGGGGGACTGGGTCGATCCCTGACTTACGCATTCTGCCTCTCCGACCGCCTGAAA
65 CAGCACGCAGAGGGGGACCGGGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* ** *
17807374 GCCCGCACGCTTGTTTCGTGGGTTAGCTTAG
129 GCCCGCACACTCATTTCGTGGGTTGGCTTAG
17807405 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
17807434 TACGGAGTTC
Statistics
Matches: 513, Mismatches: 128, Indels: 41
0.75 0.19 0.06
Matches are distributed among these distances:
156 3 0.01
157 93 0.18
158 195 0.38
159 219 0.43
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGAGGGGGACCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
CCGCACACTCATTTCGTGGGTTGGCTTAG
Found at i:17807293 original size:317 final size:314
Alignment explanation
Indices: 17806614--17807432 Score: 861
Period size: 317 Copynumber: 2.6 Consensus size: 314
17806604 CCCAGTCTAA
* * * * * * *
17806614 GCATATGGAGTTCATTCCCAGTCCAAGATCAGACTGGACCGAGGGTGGCGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
* * ** * *
17806679 GCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTCCAACGGCTGAGCACCC
65 GCACGCAAGGGGGACCAGACCGATCCCCGGCTTGCACATTCTACCTCTCCAACGGCTGAGCACCC
* * * **
17806744 GCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAAGCCCCAGTTGGA
130 ACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
* * **
17806809 CCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGGGGACCGGATCGGTCCCCGACTTGCGCA
195 CCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGACCGGACCAATCCCCGACTTGCGCA
* * * *
17806874 TTATGCCTTTCCGGCCAGTTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAG
260 TTATGCCTCTCCGACCAGTTCAGCGCCCACACACTCATTTCATGGGTTGACTTAG
* * * * *
17806929 GCATACGAAGTTCATTTCCAATCTCAGATCGGATCGGA-CGAAGGGTTGCGACAGTAGGATTGAC
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCGGACCG-AGGGTTGCGACAGTAGGATCGAC
* * * * *** *
17806993 AGCATGTAAGGGGGACTAGACCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCTGGCTGAGCGC
64 AGCACGCAAGGGGGACCAGACCGATCCCCGGCTTGCACATTCTACCTCTCCAAC-GGCTGAGCAC
* *
17807058 CCATACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAGCCCCAGTCA
128 CCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
* ** * * *
17807123 GACCGATGGTTGTGGCAGCGGGA-CTGGTAGCACGCAGAGGGGGACCGGGCCAATCCTCGGCTTG
193 GACCGAGGGTTGTGGCAGCGGGATC-GACAGCACGCAGA-GGGGACCGGACCAATCCCCGACTTG
* * *
17807187 TGCATTATGCCTCTCCGACCGGTTCAGCGCCCGCACACTCATTTCATGGGTTGACTTAG
256 CGCATTATGCCTCTCCGACCAGTTCAGCGCCCACACACTCATTTCATGGGTTGACTTAG
* * * *
17807246 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
* ** ** * * * * * * * *
17807311 GCACGCAGGGGGGGACTGGGTCGATCCCTGACTTACGCATTCTGCCTCTCCGACCGCCTGA-AAG
65 GCACGCA-AGGGGGACCAGACCGATCCCCGGCTTGCACATTCTACCTCTCC-AACGGCTGAGCA-
* * *** * *
17807375 CCCGCACGCTTGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 CCCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17807433 ATACGGAGTT
Statistics
Matches: 410, Mismatches: 84, Indels: 17
0.80 0.16 0.03
Matches are distributed among these distances:
314 2 0.00
315 88 0.21
316 105 0.26
317 124 0.30
318 90 0.22
319 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGACAG
CACGCAAGGGGGACCAGACCGATCCCCGGCTTGCACATTCTACCTCTCCAACGGCTGAGCACCCA
CACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
CGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGACCGGACCAATCCCCGACTTGCGCAT
TATGCCTCTCCGACCAGTTCAGCGCCCACACACTCATTTCATGGGTTGACTTAG
Found at i:17807441 original size:26 final size:26
Alignment explanation
Indices: 17807405--17807457 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17807395 GTTAGCTTAG
17807405 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17807431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17807457 G
1 G
17807458 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17807816 original size:26 final size:26
Alignment explanation
Indices: 17807786--17807838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17807776 GTTGACTTAG
*
17807786 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
17807812 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17807838 G
1 G
17807839 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17807940 original size:184 final size:179
Alignment explanation
Indices: 17807750--17808379 Score: 514
Period size: 184 Copynumber: 3.4 Consensus size: 179
17807740 TCTGGGTGGT
*
17807750 TGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
* *
17807814 ATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCTAGGGTTGCAGTAGTAGGATCGACAGC
65 ATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGTAGTAGGATCGACAGC
* *
17807879 ACGTAGGGGGGACCGGGTCGATCCCCATCTTGCTTATTCTGCTTTTCCGTTCGGC
129 ACGTAGGGGGGATCGGGCCGATCCCCA-CTTGC--ATTCTGCTTTTCCG-TCGGC
* ** *
17807934 TGAGCGCTCATA-GACTCGTTTCGTGGGTTGGA-TTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TGAGCGCCCGCACG-CTCGTTTCATGGGTT-GACTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
17807997 CATACGAAGTTCATTTCCAGTCTCAGATCAGACCGGACCAAGGGTTG-AGATAATAGGACCAATA
64 CATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAG----TA-G-----TA
** * * * * *
17808061 GCAAGATCGACAGCACACAGAAAGGGCATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTT-C
118 G---GATCGACAGCACGTAG--GGGGGATCGGGCCGATCCCC-ACTTG--CATTCT-GCTTTTCC
17808125 GATCGGC
174 G-TCGGC
* * * * **
17808132 TGAGCACCCACACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCGGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* * * * * * * * *
17808197 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGGCAGCAGGATAGGCAGCA
66 TAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGTAGTAGGATCGACAGCA
* * * * * *
17808262 CGTAGGGGGGATCGGGCCGATCCCTGACTGGTGCATTCTGCCTCTCTGGCAGGT
130 CGTAGGGGGGATCGGGCCGATCCC-CACT--TGCATTCTGCTTTTCCGTC-GGC
* * * * *
17808316 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17808380 CCCAGCCAGA
Statistics
Matches: 351, Mismatches: 63, Indels: 64
0.73 0.13 0.13
Matches are distributed among these distances:
183 11 0.03
184 170 0.48
185 2 0.01
186 14 0.04
187 2 0.01
188 1 0.00
189 2 0.01
193 3 0.01
194 1 0.00
195 1 0.00
196 14 0.04
197 2 0.01
198 120 0.34
199 7 0.02
200 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (179 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGTAGTAGGATCGACAGCAC
GTAGGGGGGATCGGGCCGATCCCCACTTGCATTCTGCTTTTCCGTCGGC
Found at i:17807999 original size:26 final size:26
Alignment explanation
Indices: 17807970--17808019 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17807960 GTTGGATTAG
*
17807970 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
17807996 GCATACGAAGTTCATTTCCAGTCT
1 GCATACGAAGTTCATTTCCAGTCT
17808020 CAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:17808204 original size:26 final size:26
Alignment explanation
Indices: 17808168--17808220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17808158 GTTGACTTAG
*
17808168 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17808194 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17808220 G
1 G
17808221 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17808535 original size:159 final size:157
Alignment explanation
Indices: 17808194--17808538 Score: 379
Period size: 159 Copynumber: 2.2 Consensus size: 157
17808184 CCCGGTCTAA
** * * *
17808194 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGGCAGCAGGATAGGCA
1 GCATACGGAGTTCA-TCCCAGTCTAAGCCCCAACCAGACCGAGGGTTGCGGCAGCAGGATAGACA
* * * *
17808259 GCACGTAGGGGGGATCGGGCCGATCCCTGACTGGTGCATTCTGCCTCTCTGGCAGGTTGAGCGCC
65 GCACGTAGGGGGGATCGGGCCGATCCCCGACTGGCGCATTCTGCCTCTCCGACAGGTTGAGCGCC
* * * *
17808324 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CACACGCCCATTTCGTGCGTTGACTTAG
* ** * * *
17808352 GCATAGGGAGTTCATTGCATGTCTAAGCCCCAGCCAGACCGAGGGTT-CTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATCCCA-GTCTAAGCCCCAACCAGACCGAGGGTTGC-GGCAGCAGGATAGAC
* * * * **
17808416 AGCACGTAGAGGGGGA-CTGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATTGGTTGAGC
64 AGCACGTAG-GGGGGATC-GGGCCGATCCCCGACTGGCGCATTCTGCCTCTCCGACAGGTTGAGC
* *
17808480 GCCCACATGCTCATTTCGTGCGTTGACTTAG
127 GCCCACACGCCCATTTCGTGCGTTGACTTAG
17808511 GCATACGGAGTTCATCCCCAGTCTAAGC
1 GCATACGGAGTTCAT-CCCAGTCTAAGC
17808539 ATAGAGAGTT
Statistics
Matches: 152, Mismatches: 30, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
157 4 0.03
158 57 0.38
159 89 0.59
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATCCCAGTCTAAGCCCCAACCAGACCGAGGGTTGCGGCAGCAGGATAGACAG
CACGTAGGGGGGATCGGGCCGATCCCCGACTGGCGCATTCTGCCTCTCCGACAGGTTGAGCGCCC
ACACGCCCATTTCGTGCGTTGACTTAG
Found at i:17808721 original size:343 final size:344
Alignment explanation
Indices: 17808091--17809097 Score: 1322
Period size: 343 Copynumber: 2.9 Consensus size: 344
17808081 AAAGGGCATC
* * * * * * *
17808091 GGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGATCGGCTGAGCACCCACACGCTCGTTTTAT
1 GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGCGCCCACACGCTCGTTTCAT
*
17808156 GGGTTGACTTAGGCATACGGAGTTCATCCCCGGTCTAAGCATACG-GAGTTCATTCCCAGTCTAA
66 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAGAGTTCATTCCCAGTCTAA
* * * *
17808220 GATCGAACCAGATCGAGGGTTGCGGCAGCAGGATAGGCAGCACGTAGGGGGGATCGGGCCGATCC
131 GATCAAACCAAATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCC
* * * * * * *
17808285 CTGACTGGTGCATTCTGCCTCTCTG-GCAGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
196 CCGACTTGCGCATTCTACCTCTCCGATC-GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
* * * * *
17808349 TAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAGCCAGACCGAGGGTTCTGGCAGCGGGATCG
260 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCA
* * *
17808414 ACAGCACGTAGAGGGGGACT
325 ACAACAAGCAGAGGGGGACT
* * * * *
17808434 GGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATTGGTTGAGCGCCCACATGCTCATTTCGT
1 GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGCGCCCACACGCTCGTTTCAT
*
17808499 GCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA-GAGAGTTCATTCCCAGTCTAA
66 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAGAGTTCATTCCCAGTCTAA
* *
17808563 GATCAAACCAAATTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCC
131 GATCAAACCAAATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCC
* * * * *
17808628 CCGACTTACGCATTCTACCTCTCCGATCGACTGAGCACCTGCACGCCCATTTCGTGGGTTGGCTT
196 CCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTT
* * * *
17808693 AGGCATAGGGAGTTAATTCCATGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGCAGTGGGACCAA
261 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCAA
*
17808758 CAACAAGCAGAGGGGGATT
326 CAACAAGCAGAGGGGGACT
* * * ** * *
17808777 GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACTGATTGAGCGCCTGCACGTTTGTTTCAT
1 GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGCGCCCACACGCTCGTTTCAT
* * *
17808842 GGGTTGACTTAGGCATACAGAGTTCATCCCCAATGTAAGCATACGA-AGTTCATTCCCAGTCTAA
66 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAGAGTTCATTCCCAGTCTAA
* * * * * * * * * * *
17808906 GATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGG-CCAGACTGATCC
131 GATCAAACCAAATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCC
* * *
17808970 CCGACTTGCGCATTCTACCTCTTCGATTGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTT
196 CCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTT
* * *
17809035 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGATGGTTGTGGTAGCGGGACC
261 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACC
17809098 GGGCTAATCC
Statistics
Matches: 572, Mismatches: 89, Indels: 7
0.86 0.13 0.01
Matches are distributed among these distances:
342 122 0.21
343 447 0.78
344 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (344 bp):
GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGCGCCCACACGCTCGTTTCAT
GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAGAGTTCATTCCCAGTCTAA
GATCAAACCAAATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCC
CCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCAA
CAACAAGCAGAGGGGGACT
Found at i:17808906 original size:26 final size:26
Alignment explanation
Indices: 17808854--17808906 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17808844 GTTGACTTAG
*
17808854 GCATACAGAGTTCATCCCCAATGTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
17808880 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
17808906 G
1 G
17808907 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17809222 original size:138 final size:138
Alignment explanation
Indices: 17808966--17809222 Score: 295
Period size: 138 Copynumber: 1.9 Consensus size: 138
17808956 GGCCAGACTG
* * * * * ** * *
17808966 ATCCCCGACTTGCGCATTCTACCTCTTCGATTGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTG
1 ATCCCCGACTTGCGCATTATACCTCTTCGACTAGCTCAGCGCCCGAACACCCATTTCGTGGGTTA
* * * * ** *
17809031 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGATGGTTGTGGTAGCGGGA
66 ACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCAAGGGTTGTGGTAGCGGGA
17809096 CCGGGCTA
131 CCGGGCTA
* *
17809104 ATCCCCGACTTGCGCATTATGCCT-TTCCGACTAGCTCAGCGCCCGAACACTCATTTCGTGGGTT
1 ATCCCCGACTTGCGCATTATACCTCTT-CGACTAGCTCAGCGCCCGAACACCCATTTCGTGGGTT
*
17809168 AACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCAAGGGTTG
65 AACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGAACCAAGGGTTG
17809223 CAACAGCAGG
Statistics
Matches: 97, Mismatches: 19, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
137 5 0.05
138 89 0.92
139 3 0.03
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.26
Consensus pattern (138 bp):
ATCCCCGACTTGCGCATTATACCTCTTCGACTAGCTCAGCGCCCGAACACCCATTTCGTGGGTTA
ACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCAAGGGTTGTGGTAGCGGGA
CCGGGCTA
Found at i:17809370 original size:26 final size:26
Alignment explanation
Indices: 17809334--17809386 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17809324 GTTGGCTTAG
17809334 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17809360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17809386 G
1 G
17809387 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17809574 original size:26 final size:26
Alignment explanation
Indices: 17809544--17809596 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17809534 GTTAACTTAG
17809544 GCATACGGAGTTCATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* *
17809570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
17809596 G
1 G
17809597 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:17809919 original size:26 final size:26
Alignment explanation
Indices: 17809889--17809938 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17809879 AGCTTAGGCT
*
17809889 TACGGAGTTC-ATTCCATGTCTAAGCA
1 TACGGAGTTCAATCCCA-GTCTAAGCA
17809915 TACGGAGTTCAATCCCAGTCTAAG
1 TACGGAGTTCAATCCCAGTCTAAG
17809939 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCAATCCCAGTCTAAGCA
Found at i:17810636 original size:26 final size:26
Alignment explanation
Indices: 17810607--17810659 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17810597 GTTAACTTAG
*
17810607 GCATACGGAGTTC-ATCCCCAATCTAA
1 GCATACAGAGTTCAAT-CCCAATCTAA
*
17810633 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
17810659 G
1 G
17810660 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAATCTAA
Found at i:17811113 original size:158 final size:157
Alignment explanation
Indices: 17810633--17811125 Score: 508
Period size: 158 Copynumber: 3.1 Consensus size: 157
17810623 CCCAATCTAA
* * * * * * * *
17810633 GCATACAGAGTTCAATCCCAGTCTAAGATC-GAACCGGACAGAGGGTTGCGGCAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAATCTAACATCAG-ACCAGACTGAGGGTTGTGGCAGTAGGATCGAC
* * * * * ** *
17810697 AGCACGCAAGGGGGACCAGGCCTATCCCCGGCTTACACATTCTGCCTCTCCGATCGACTGAGCGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCATTATGCCTCTCCGATCG-CTGAGCGC
* *
17810762 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTCGTGGGTTGACTTAG
* ** * * *
17810791 GCATAGGGAGTTCATT-CCAAGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGTGGGACCGA
1 GCATACGGAGTTCATTCCCAA-TCTAA-CATCAGACCAGACTGAGGGTTGTGGCAGTAGGATCGA
* * * **
17810854 CAGCACGCAGAGGTGGATCGAGCCGATCCCC-AGCTTGTGCATTATGCCTCTCCGGCCGGCTGAG
64 CAGCACGCAG-GGGGGATCGGGCCGATCCCCGA-CTTATGCATTATGCCTCTCCGATC-GCTGAG
* * * * *
17810918 TGCCTGCACACTCATTTCGTGGGTTGACTTAG
126 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* *
17810950 GCATACGGAGTTCATTCCCAATATAACATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAACATCAGACCAGACTGAGGGTTGTGGCAGTAGGATCGACA
* * *
17811015 GCACGCAGGGGGGATCGGGTCGGTCCCCGACTTATGCATTTTGCCTCTCCGATCAGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCATTATGCCTCTCCGATC-GCTGAGCGCC
* * *
17811080 CGTACGCTCGTTTCATGGGTTGCCTTTG
130 CGTACGCTCGTTTCGTGGGTTGACTTAG
17811108 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
17811126 ATGTCTAAGC
Statistics
Matches: 267, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 138 0.52
159 120 0.45
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAACATCAGACCAGACTGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCATTATGCCTCTCCGATCGCTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17811158 original size:26 final size:26
Alignment explanation
Indices: 17811108--17811160 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17811098 GTTGCCTTTG
**
17811108 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
*
17811134 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCACATCTAA
17811160 G
1 G
17811161 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:17811339 original size:26 final size:26
Alignment explanation
Indices: 17811303--17811355 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17811293 GTTGACTTAG
17811303 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
17811329 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
17811355 G
1 G
17811356 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:17811356 original size:195 final size:196
Alignment explanation
Indices: 17811000--17811359 Score: 469
Period size: 195 Copynumber: 1.8 Consensus size: 196
17810990 GAGGGTTGTG
* * *
17811000 GCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGGTCCCCGACTTATGCATTTTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTATGCATTCTGCCTCTCC
* * * * * *
17811065 GATCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGCCTTTGGCATACGGAGTTCATTCCATGT
66 GATCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGT
*
17811130 CTAAGCATACGGAGTTCATTCCCCATCTAAGATCAGACCAGACCAAGGCTTACGGTAGCAAGACC
131 CTAAGCATACAGAGTTCATTCCCCATCTAAGATCAGACCAGACCAAGGCTTACGGTAGCAAGACC
17811195 A
196 A
* *
17811196 GCAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCC-AGTT-TGCGTATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTATGC--ATTCTGCCTCT
* * * * * *
17811259 TCGA-CTGGTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCA
64 CCGATCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCA
* *
17811323 -GTCTAAGCATATAGAGTTTATT-CCCAGTCTAAGATCA
128 TGTCTAAGCATACAGAGTTCATTCCCCA-TCTAAGATCA
17811360 AATCGGGCTG
Statistics
Matches: 140, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
194 7 0.05
195 77 0.55
196 56 0.40
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (196 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTATGCATTCTGCCTCTCC
GATCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGT
CTAAGCATACAGAGTTCATTCCCCATCTAAGATCAGACCAGACCAAGGCTTACGGTAGCAAGACC
A
Found at i:17812361 original size:26 final size:26
Alignment explanation
Indices: 17812324--17812376 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17812314 GTTAACTTAG
17812324 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
17812350 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
17812376 G
1 G
17812377 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17812651 original size:159 final size:159
Alignment explanation
Indices: 17812437--17812853 Score: 446
Period size: 159 Copynumber: 2.6 Consensus size: 159
17812427 GACCAGGCCT
** * * *
17812437 ATCCCCAGCTTGCACATTCTGCCTCTCCGATCGACTGAGCGCCCGCATGCCCATTTCGTGGGTTG
1 ATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
* * ** * * * **
17812502 GCTTAGGCATAGGGAGTTTGTTCCAAGTCTAAGCCCCAG-CCAGACTGAGGATTGTGG-TAGTGG
66 ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGACCAGACCGAGGATTGCGGTTA-CAG
* * * *
17812565 GACCGATAGCACGCAGATGGGGATCGGGTCG
130 GACCGACAGCACACAG-GGGGGATCGGGACG
* * * *
17812596 ATCCCCAGTTTGTGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTG
1 ATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
* * * * *
17812661 ACTTAGGCATACGAAGTTCATTCCCAA-TATAA-CATCAGACCGGACCGAGGGTTGCGGTTACAG
66 ACTTAGGCATACGGAGTTCATT-CCAAGTCTAAGCACCAGACCAGACCGAGGATTGCGGTTACAG
*
17812724 GATCGACAGCACACAGGGGGGATCGGGACG
130 GACCGACAGCACACAGGGGGGATCGGGACG
* * * ** * *
17812754 ATCCTCGGCTTGTGCATTCTACCTCTCCGATCGGCTGAGCGCCCATACGCTCGTTTCATGGGTTG
1 ATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
* *
17812819 CCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCA
17812854 TACGGAGTTT
Statistics
Matches: 210, Mismatches: 43, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 94 0.45
159 107 0.51
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (159 bp):
ATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGACCAGACCGAGGATTGCGGTTACAGG
ACCGACAGCACACAGGGGGGATCGGGACG
Found at i:17812875 original size:26 final size:26
Alignment explanation
Indices: 17812825--17812877 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17812815 GTTGCCTTAG
**
17812825 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
* *
17812851 GCATACGGAGTTTATTCCCCATCTAA
1 GCATACGGAGTTCATTCCACATCTAA
17812877 G
1 G
17812878 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:17813056 original size:26 final size:26
Alignment explanation
Indices: 17813020--17813072 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17813010 GTTGACTTAG
17813020 GCATACGGAG-TTCATCCCCAGTCTAA
1 GCATACGGAGTTTC-TCCCCAGTCTAA
* *
17813046 GCATATGGAGTTTCTTCCCAGTCTAA
1 GCATACGGAGTTTCTCCCCAGTCTAA
17813072 G
1 G
17813073 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTTCTCCCCAGTCTAA
Found at i:17813058 original size:195 final size:196
Alignment explanation
Indices: 17812721--17813229 Score: 490
Period size: 195 Copynumber: 2.7 Consensus size: 196
17812711 GTTGCGGTTA
* * * * * *
17812721 CAGGATCGACAGCACACAGGGGGGATCGGGACGATCCTCGGCTTGTGCATTCTACCTCTCCGATC
1 CAGGATCAACAGCACACAGGGGGGACCGGGACAATCCCCGGCTTGCGCATTCTACCTCTCCAATC
* * * * * *
17812786 GGCTGAGCGCCCATACGCTCGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTAAGCACACACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
17812851 GCATACGGAGTTTATTCCCCA-TCTAAGATCAGACTGGACCAAGGCTTATGGTAGCAAGACCAGC
131 GCATACGGAGTTTATT-CCCAGTCTAAGATCAGACTGGACCAAGGCTTATGGTAGCAAGACCAGC
17812915 AG
195 AG
* * * * *
17812917 CAGGATCAACAGCACGCAGGGGGGACCGGGTCAATCCCCGGCTTGCGTATTCTGCCTCTTCAATC
1 CAGGATCAACAGCACACAGGGGGGACCGGGACAATCCCCGGCTTGCGCATTCTACCTCTCCAATC
* *
17812982 GG-TAAGCACACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
66 GGCTAAGCACACACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTA
* * * * *
17813045 AGCATATGGAGTTTCTTCCCAGTCTAAGATCA-A----ACC-AGGCTGAGGGTTGC--G---A-C
130 AGCATACGGAGTTTATTCCCAGTCTAAGATCAGACTGGACCAAGGCTTATGGTAGCAAGACCAGC
17813098 AG
195 AG
* * ** * * ** **
17813100 TAGGATCGACAGCACACAGGGGGGATGGGGCCGATCTTCGGCTTGCGCATTCTACCTCTCCTGTC
1 CAGGATCAACAGCACACAGGGGGGACCGGGACAATCCCCGGCTTGCGCATTCTACCTCTCCAATC
* * * ** * * * * * *
17813165 GGCTGAGCGCCCGGACGCCCGTTGCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAA
66 GGCTAAGCACACACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
17813230 CCCCAGTCAG
Statistics
Matches: 260, Mismatches: 49, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
183 59 0.23
184 48 0.18
187 1 0.00
189 11 0.04
190 3 0.01
194 5 0.02
195 74 0.28
196 59 0.23
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (196 bp):
CAGGATCAACAGCACACAGGGGGGACCGGGACAATCCCCGGCTTGCGCATTCTACCTCTCCAATC
GGCTAAGCACACACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
GCATACGGAGTTTATTCCCAGTCTAAGATCAGACTGGACCAAGGCTTATGGTAGCAAGACCAGCA
G
Found at i:17814076 original size:26 final size:26
Alignment explanation
Indices: 17814040--17814092 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17814030 GTTGACTTAG
*
17814040 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17814066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17814092 G
1 G
17814093 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17814513 original size:157 final size:159
Alignment explanation
Indices: 17814162--17814555 Score: 449
Period size: 157 Copynumber: 2.5 Consensus size: 159
17814152 GCAAATTCTG
* * * * * *
17814162 CCTCTCCGA-TCGGCTCAACGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
1 CCTCTCCGACT-GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCA
* * * ** *
17814226 TT-CCATGTCTAAGCCGCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGGCAGCACATAGAGGGG
64 TTCCCATGTCTAAGCAGCAGCCAGACCGAGGGTTGAGGCAGCAGGATCGACAGCACATAGAGGGG
* * *
17814290 AATCGGGTCGATCCTCGGCTTGCGCATTATG
129 AATCAGGTCGATCCCCGGCTTGCGCATTATA
* *
17814321 CCTCTCCGATTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATT
1 CCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATT
** * * *
17814386 CCCA-GTCTAAG-ATTAGACCAGACTGAGGGTTGAGGTAGCAGGATCGACAGCACATAG-GGGGG
66 CCCATGTCTAAGCAGCAG-CCAGACCGAGGGTTGAGGCAGCAGGATCGACAGCACATAGAGGGGA
*
17814448 ATCAGGTCGATCCCCGGCTTGCGCATTCTA
130 ATCAGGTCGATCCCCGGCTTGCGCATTATA
* * * * *
17814478 CCTCTCCTACTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGACTTCAT
1 CCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCAT
*
17814543 T-CCATGTCCAAGC
65 TCCCATGTCTAAGC
17814556 CCTAGTTGGA
Statistics
Matches: 199, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
157 85 0.43
158 63 0.32
159 50 0.25
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATT
CCCATGTCTAAGCAGCAGCCAGACCGAGGGTTGAGGCAGCAGGATCGACAGCACATAGAGGGGAA
TCAGGTCGATCCCCGGCTTGCGCATTATA
Found at i:17814742 original size:26 final size:26
Alignment explanation
Indices: 17814712--17814764 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17814702 GTTGACTTAG
17814712 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17814738 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17814764 G
1 G
17814765 ATCAGACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17815248 original size:26 final size:26
Alignment explanation
Indices: 17815212--17815264 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17815202 GTTGCCTTAG
17815212 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
* *
17815238 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17815264 G
1 G
17815265 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17817211 original size:26 final size:26
Alignment explanation
Indices: 17817175--17817227 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17817165 GTTGGCTTAG
*
17817175 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
17817201 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
17817227 G
1 G
17817228 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:17817331 original size:11 final size:11
Alignment explanation
Indices: 17817297--17817340 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
17817287 CCCGGGGCAC
17817297 CATCACCGGAG
1 CATCACCGGAG
**
17817308 CATCGTCGGAG
1 CATCACCGGAG
*
17817319 CATCACCGAAG
1 CATCACCGGAG
*
17817330 CATTACCGGAG
1 CATCACCGGAG
17817341 AGCCTAACCG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.27, C:0.32, G:0.27, T:0.14
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:17817972 original size:26 final size:26
Alignment explanation
Indices: 17817920--17817972 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17817910 GTTGACATAG
* *
17817920 GCATATGGAGTTCATCCCCAGTTTAA
1 GCATATGGAGTTCATCCCCAATCTAA
*
17817946 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
17817972 G
1 G
17817973 GTTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:17818258 original size:159 final size:158
Alignment explanation
Indices: 17817978--17818329 Score: 425
Period size: 159 Copynumber: 2.2 Consensus size: 158
17817968 CTAAGGTTGG
* * * * *
17817978 ACCAGACCGAGGGTTATGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGACT
1 ACCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACT
** * * * * *
17818043 TGTGCATTCTGCCTCCCCGACCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCAT
66 TACGCATTCTACCTCCCCGACCGACTCAGAGCCCACACGCTCATTTCATGGGTTGGCTTAGGAAT
* * *
17818108 ACAGAGTTCATTCTATGTCTAAGCCCTA
131 ACAAAGTTCATTCCATGTCTAAGCCCCA
* ** * * * * *
17818136 GCTGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGATCGGGCCGATCCTCGGC
1 ACCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCCGAC
* * * ** *
17818201 TTACGCATTCTACCTCTCCGACCGGCTCAGAGCTCGTACGCTCATTTCGTGGGTTGGCTTAGGAA
65 TTACGCATTCTACCTCCCCGACCGACTCAGAGCCCACACGCTCATTTCATGGGTTGGCTTAGGAA
*
17818266 TACAAAGTTTATTCCATGTCTAAGCCCCA
130 TACAAAGTTCATTCCATGTCTAAGCCCCA
17818295 ACCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
1 ACCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
17818330 GAGATCGGCA
Statistics
Matches: 159, Mismatches: 34, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
158 32 0.20
159 127 0.80
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
ACCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACT
TACGCATTCTACCTCCCCGACCGACTCAGAGCCCACACGCTCATTTCATGGGTTGGCTTAGGAAT
ACAAAGTTCATTCCATGTCTAAGCCCCA
Found at i:17818460 original size:171 final size:171
Alignment explanation
Indices: 17818153--17818461 Score: 386
Period size: 171 Copynumber: 1.8 Consensus size: 171
17818143 CGAGGGTTGT
* * * * * * * *
17818153 GGCAGCGGGACCGGCAGCACGTAGAGGGGGATCGGGCCGATCCTCGGCTTACGCATTCTACCTCT
1 GGCAGCGAGACCGGCAGCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTACCCATTATACCTCT
* * * * * *
17818218 CCGACCGGCTCAGAGCTCGTACGCTCATTTCGTGGGTTGGCTTAGGAATACAAAGTTTATTCCAT
66 ACGACCGGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGAATACAAAGTTCATCCCAT
17818283 GTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACC
131 GTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACC
* * * *
17818324 GGCAGCGAGATCGGCAGCACGCAAAGGGGGACCGAGCTGATCCCCGGCTTGCCCATTATGCCTCT
1 GGCAGCGAGACCGGCAGCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTACCCATTATACCTCT
* * * * **
17818389 ACGACCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
66 ACGACCGGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGAATACAAAGTTCAT-CCCA
17818454 -GTCTAAGC
130 TGTCTAAGC
17818462 ATACAGAGTT
Statistics
Matches: 113, Mismatches: 24, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
171 110 0.97
172 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (171 bp):
GGCAGCGAGACCGGCAGCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTACCCATTATACCTCT
ACGACCGGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGAATACAAAGTTCATCCCAT
GTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACC
Found at i:17818470 original size:26 final size:26
Alignment explanation
Indices: 17818434--17818486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17818424 GTTGACTTAG
*
17818434 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17818460 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17818486 G
1 G
17818487 ATCAGACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17818824 original size:514 final size:514
Alignment explanation
Indices: 17817894--17818829 Score: 1083
Period size: 514 Copynumber: 1.8 Consensus size: 514
17817884 TAAGCGTCCA
* * * * **
17817894 CACGCTCGTTTCGTTGGTTGACATAGGCATATGGAGTTCATCCCCAGTTTAAGCATATGGAGTTC
1 CACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
* ** * * * *
17817959 ATTCCCAATCTAAGGTTGGACCAGACCGAGGGTTATGGCAGTAGGATCGACAGCACGCAGGGGGG
66 ATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGG
* ** * ** *
17818024 ACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCCCCGACCGACTGAGTGCCCACACGCTCGTTT
131 ACCGGGCCGATCCCCGACTTACGCATTCTACCTCCCCGACCGACTGAGCACCCACACACTCGTTT
* * * ** *
17818089 CATGGGTTGGCTTAGGCATACAGAGTTCATTCTATGTCTAAGCCCTAGCTGGACCGAGGGTTGTG
196 CATGGGTTGGCTAAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTG
* ** * * * * *
17818154 GCAGCGGGACCGGCAGCACGTAGAGGGGGATCGGGCCGATCCTCGGCTTACGCATTCTACCTCTC
261 GCAACGGGACCGGCAGCACACAAAGGGGGATCCGACCGATCCTCGGCTTACGCATTATACCTCCC
* * ** * *
17818219 CGACCGGCTCAGAGCTCGTACGCTCATTTCGTGGGTTGGCTTAGGAATACAAAGTTTATTCCATG
326 CGACCGGCTCAGAGCCCGAACGCTCATTTCGTGGGTTAACTTAGGAATACAAAGTTCATTCCATC
* *
17818284 TCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGGCAGCACGCAAA
391 TCTAAGACCCAACCAGACCAAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGGCAGCACGCAAA
17818349 GGGGGACCGAGCTGATCCCCGGCTTGCCCATTATGCCTCTACGACCGGTTGAGCGCCCG
456 GGGGGACCGAGCTGATCCCCGGCTTGCCCATTATGCCTCTACGACCGGTTGAGCGCCCG
*
17818408 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
1 CACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
* * * * ** *
17818473 ATTCCCAGTCTAAGATCAGACTAAATCGAGGGTTCCGACAGCAGGATCGGTAGCACGTAGGGGGG
66 ATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGG
* * * *** *
17818538 ATCGGGCCGATCCCCGTCTTACGTATTCTACCTTTTCGACCGACTGAGCACCCGCACACTCGTTT
131 ACCGGGCCGATCCCCGACTTACGCATTCTACCTCCCCGACCGACTGAGCACCCACACACTCGTTT
** * ** *
17818603 TGTTGGTTGGCTAAGGCATAGGGAGTTCATTCCAT-TCCTAAGCCCCAGCCAGACTGAGAGTTAG
196 CATGGGTTGGCTAAGGCATACAGAGTTCATTCCATGT-CTAAGCCCCAGCCAGACCGAGAGTT-G
* * *
17818667 -GGCAACGGGACCGGCAGCACACAAAGTGGGA-CCGACCTTATCC-CTGGCTTGCGCATTAT-CC
259 TGGCAACGGGACCGGCAGCACACAAAGGGGGATCCGACC-GATCCTC-GGCTTACGCATTATACC
* * * * **
17818728 GTCCCCGACTGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATT
322 -TCCCCGACCGGCTCAGAGCCCGAACGCTCATTTCGTGGGTTAACTTAGGAATACAAAGTTCATT
* ** * *
17818793 CCCA-CTCTAAGATCGGATCGGACCAAGGGTTGTGGCA
386 -CCATCTCTAAGACCCAACCAGACCAAGGGTTGTGGCA
17818830 ACAAGATCGA
Statistics
Matches: 339, Mismatches: 77, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
513 8 0.02
514 327 0.96
515 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (514 bp):
CACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
ATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGG
ACCGGGCCGATCCCCGACTTACGCATTCTACCTCCCCGACCGACTGAGCACCCACACACTCGTTT
CATGGGTTGGCTAAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTG
GCAACGGGACCGGCAGCACACAAAGGGGGATCCGACCGATCCTCGGCTTACGCATTATACCTCCC
CGACCGGCTCAGAGCCCGAACGCTCATTTCGTGGGTTAACTTAGGAATACAAAGTTCATTCCATC
TCTAAGACCCAACCAGACCAAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGGCAGCACGCAAA
GGGGGACCGAGCTGATCCCCGGCTTGCCCATTATGCCTCTACGACCGGTTGAGCGCCCG
Found at i:17819153 original size:26 final size:26
Alignment explanation
Indices: 17819124--17819176 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17819114 GTTGGCTTAG
17819124 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
17819150 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
17819176 G
1 G
17819177 AGTTTGAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:17819880 original size:26 final size:26
Alignment explanation
Indices: 17819843--17819895 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17819833 GTTGACTTAG
*
17819843 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
17819869 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
17819895 G
1 G
17819896 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17820381 original size:26 final size:26
Alignment explanation
Indices: 17820345--17820395 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17820335 TTGGCTTAGG
*
17820345 CATACATAGTTCATTCC-ATGTCTAAC
1 CATACAGAGTTCATTCCTA-GTCTAAC
17820371 CATACAGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATTCCTAGTCTAA
17820396 GATCAGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.33
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAC
Found at i:17820754 original size:26 final size:26
Alignment explanation
Indices: 17820724--17820776 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17820714 GTTGACTTAG
17820724 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
17820750 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17820776 G
1 G
17820777 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17821117 original size:158 final size:158
Alignment explanation
Indices: 17820791--17821119 Score: 489
Period size: 159 Copynumber: 2.1 Consensus size: 158
17820781 GATCAGACTG
* * *
17820791 AGGGTTGTGACAGCAGGATTGACAGCACGTAGGGAGGATCGGGCTGAACCCTGGCTTGCGCATTC
1 AGGGTTGTGGCAGCAGGATTGACAGAACGTAGGGAGGATCGGGCTGAACCCCGGCTTGCGCATTC
*** * * *
17820856 TGCCTCTCTGGCCGGCTGAGTGACCTGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 TGCCTCTCCAACCAGCTGAGCGACCTG-ACGCCCATTTCGTGGGTTGGCTTAGCCATAGGGAGTT
* *
17820921 CATTCCATGTCTAAGCCCCAGTCGGACCG
130 CATTCCATGTCTAAGCCCCAGCCGGACCA
* * *
17820950 AGGGTTGTGGTAGCAGGATTGACAGAACGTAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTC
1 AGGGTTGTGGCAGCAGGATTGACAGAACGTAGGGAGGATCGGGCTGAACCCCGGCTTGCGCATTC
*
17821015 TGCCTCTCCAACCAGCTGAGCGCCCCTG-CGCCCATTTCGTGGGTTGGCTTAGCCATAGGGAGTT
66 TGCCTCTCCAACCAGCTGAGCG-ACCTGACGCCCATTTCGTGGGTTGGCTTAGCCATAGGGAGTT
*
17821079 CATTCCATGTCTAAGCCCCAGCCGTACCA
130 CATTCCATGTCTAAGCCCCAGCCGGACCA
17821108 AGGGTTGTGGCA
1 AGGGTTGTGGCA
17821120 ACGGGACCAG
Statistics
Matches: 152, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
158 72 0.47
159 76 0.50
160 4 0.03
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
AGGGTTGTGGCAGCAGGATTGACAGAACGTAGGGAGGATCGGGCTGAACCCCGGCTTGCGCATTC
TGCCTCTCCAACCAGCTGAGCGACCTGACGCCCATTTCGTGGGTTGGCTTAGCCATAGGGAGTTC
ATTCCATGTCTAAGCCCCAGCCGGACCA
Found at i:17821225 original size:159 final size:158
Alignment explanation
Indices: 17820883--17821253 Score: 415
Period size: 159 Copynumber: 2.3 Consensus size: 158
17820873 GAGTGACCTG
*
17820883 TACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
1 TACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * ** * * **
17820948 CGAGGGTTGTGGTAGCAGGATTGACAGAACGTAGGGGGGATCGGGCTGATCCCCGGCTTGCGCAT
66 CAAGGGTTGTGGCAACAGGACAGACAGAACGCAGGGGGGATCGGGCCGATCCCCAACTTGCGCAT
* *
17821013 TCTGCCTCTCCAACCAGCTGAGCGCCCC
131 TATGCCTCTCCAACCAGCTCAGCGCCCC
* * *
17821041 TGCGCCCATTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGTAC
1 TACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * * *
17821106 CAAGGGTTGTGGCAACGGGACCAG-CAGCATGCAGAGGGGG-TCCGGGCCGATCCCTAACTTGTG
66 CAAGGGTTGTGGCAACAGGA-CAGACAGAACGCAG-GGGGGAT-CGGGCCGATCCCCAACTTGCG
* ** *
17821169 CATTATGCCTCTTCGGCCAGCTCAGCGCCCG
128 CATTATGCCTCTCCAACCAGCTCAGCGCCCC
* * * * * *
17821200 TACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 TACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
17821254 ATACGAAGTT
Statistics
Matches: 177, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
158 85 0.48
159 89 0.50
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
TACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
CAAGGGTTGTGGCAACAGGACAGACAGAACGCAGGGGGGATCGGGCCGATCCCCAACTTGCGCAT
TATGCCTCTCCAACCAGCTCAGCGCCCC
Found at i:17821255 original size:26 final size:26
Alignment explanation
Indices: 17821226--17821278 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17821216 GTTGACTTAG
*
17821226 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17821252 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17821278 G
1 G
17821279 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17821445 original size:26 final size:26
Alignment explanation
Indices: 17821409--17821461 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17821399 GTTTGCTTAG
17821409 GCATACGGAGTTAATTCC-ATGTCTAA
1 GCATACGGAGTTAATTCCTA-GTCTAA
*
17821435 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCTAGTCTAA
17821461 G
1 G
17821462 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCTAGTCTAA
Found at i:17822182 original size:26 final size:26
Alignment explanation
Indices: 17822130--17822182 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17822120 GTTGACTTAG
*
17822130 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
17822156 GCATATGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17822182 G
1 G
17822183 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17823047 original size:171 final size:171
Alignment explanation
Indices: 17822658--17823056 Score: 408
Period size: 171 Copynumber: 2.3 Consensus size: 171
17822648 TTCCATGTAG
* * **
17822658 AAGCATAGGGAGTTCATTCCCAGTCTAAAATTGGATCGGATCGAGGGTTGCGACAGCAGGACCAG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGACCAG
* * * * * * *
17822723 CAACGGGATTGACAGCATGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTTC
66 CAACGGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCC
* * * * * * *
17822788 AGTCGGTTGAGCGTCAGTACGCTCGTATCGTGGGTTGGCTT
131 AGTCGGCTGACCGCCAGTACACTCGTATCATGGGTTGACAT
* ** * * ** *
17822829 AGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGATCGAGGGTTGTGGTAGTAGGACC
1 AAGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGCGACAGCAGGACC
* * * * *
17822892 GGCAGCGGGATCGACAGCATGTAGATGGGGACCGGGCTGATCCCCAGCTTACGCATTATGCCTCT
64 AGCAACGGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCT
* *
17822957 CCAG-CTGGCTGACCGCCCGTACACTCGTTTCATGGGTTGACAT
129 CCAGTC-GGCTGACCGCCAGTACACTCGTATCATGGGTTGACAT
* * * * *
17823000 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGC
17823057 TGGATCGGTA
Statistics
Matches: 179, Mismatches: 44, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
170 7 0.04
171 168 0.94
172 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (171 bp):
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGACCAG
CAACGGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCC
AGTCGGCTGACCGCCAGTACACTCGTATCATGGGTTGACAT
Found at i:17823151 original size:158 final size:158
Alignment explanation
Indices: 17822918--17823504 Score: 499
Period size: 159 Copynumber: 3.7 Consensus size: 158
17822908 GCATGTAGAT
* * * * * ** * *
17822918 GGGGACCGGGCTGATCCCCAGCTTACGCATTATGCCTCTCC-AGCTGG-CTGACCGCCCGTACAC
1 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGTC-GAGTGCCCGCACGC
* *
17822981 TCGTTTCATGGGTTGACATAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
64 TCGTTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGG
* *
17823046 GTTGCGGCAGCTGGATCGGTAGCACGCAGG
129 GTTGTGGCAGCTGGATCGGCAGCACGCAGG
* * *
17823076 GGGGACCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTCGAGTGCCCGCACGCGC
1 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTCGAGTGCCCGCACGCTC
* * * ** *
17823141 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGGCCCAG-CCAGACCGAGG
66 GTTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCA-GTCTAA-GACCAGACCAGACCGAGG
* * *
17823204 GTTGTGGTAG-TGGGA-CTGGCAGCATGCAAAG
129 GTTGTGGCAGCT-GGATC-GGCAGCACGC-AGG
** * * ** * ** *
17823235 GGGGTGCGGGTCGATCCCCAGCTTGCATATTATGCCTCTCCGGTCGGCTC-AGTGCTCGCACGCT
1 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGG-TCGAGTGCCCGCACGCT
* * * * * ** *
17823299 CGTTTCATGGGTTAACTTATGCATACAAAGTTCATTCCTAGTCTAAGACCAGACCGGACTAAGGA
65 CGTTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGG
** *
17823364 TTGTGGCAGCAAGATCGACAGCACGCAGGG
130 TTGTGGCAGCTGGATCGGCAGCACGCA-GG
* * * **
17823394 GGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGG-CTGAGCACCCGCACGCT
1 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTC-GAGTGCCCGCACGCT
* * * * **
17823458 CGTTTCGTGGGTTGGCTCAGGCATATGGAGTTCATT-CCATGTCTAAG
65 CGTTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCA-GTCTAAG
17823505 CATATGAAGT
Statistics
Matches: 332, Mismatches: 81, Indels: 31
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 122 0.37
159 199 0.60
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTCGAGTGCCCGCACGCTC
GTTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGT
TGTGGCAGCTGGATCGGCAGCACGCAGG
Found at i:17823515 original size:26 final size:26
Alignment explanation
Indices: 17823478--17823530 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17823468 GTTGGCTCAG
*
17823478 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGAAGTTCATTCCCA-GTCTAA
17823504 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
17823530 G
1 G
17823531 ATTTTGAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:17824528 original size:159 final size:159
Alignment explanation
Indices: 17824249--17824715 Score: 532
Period size: 159 Copynumber: 2.9 Consensus size: 159
17824239 ATTGAATCAA
** * * **
17824249 ACCGAGGGTTGCAGCAGCAGGATCGACAGCACG-TAG-GAGGGACTGGGTCGATCCCCGGCTTGC
1 ACCGAGGGTTGTGGCAGTAGGATCGATAGCACGTTAGAG-GGGACCAGGTCGATCCCCGGCTTGC
* * * *
17824312 GCATTCTGCCTCTTCGGTCGACTGAGCACCCGCACGCTTGTTTCATAGGTTGGCTTAGGCATAGC
65 GCATTCTGCCTCTCCGGTCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATA-C
*
17824377 -GAGTTCATTCCATGTCTAAGCCCTAGCT-GG
129 AGAGTTCATTCCATGTCTAAGCCC-AGATCGG
* * *
17824407 ACCGAGGGTTGTGGCAGTGGGATCGGTAGCACG-TAGAGGAGGACCAGGTCGATCCCCGGTTTGC
1 ACCGAGGGTTGTGGCAGTAGGATCGATAGCACGTTAGAGG-GGACCAGGTCGATCCCCGGCTTGC
* * * * * * * ** *
17824471 GCATTATGCCTCTCCGATTGGCTCAGCGCCCACACGCTCATTTTGTGGGTTGGCTTAGGCATACG
65 GCATTCTGCCTCTCCGGTCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACA
**
17824536 GAGTTCATTCGCA-GTCTAAGATCAGATCGG
130 GAGTTCATTC-CATGTCTAAGCCCAGATCGG
* * * * * *
17824566 ACTGAGGGTTGTGGCAGTAGGATCGATAGTACGTTGGAGGGGACCAGGTCGATCCCTGACTTACG
1 ACCGAGGGTTGTGGCAGTAGGATCGATAGCACGTTAGAGGGGACCAGGTCGATCCCCGGCTTGCG
* **
17824631 CATTCTGCCTCTCCGGTCGACTGAGCACCCACACACTCGTTTCATGGGTTGGCTTAATCATACAG
66 CATTCTGCCTCTCCGGTCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
17824696 AGTTCATTCCATGTCTAAGC
131 AGTTCATTCCATGTCTAAGC
17824716 ATACGGAGTT
Statistics
Matches: 254, Mismatches: 48, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
158 37 0.15
159 210 0.83
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
ACCGAGGGTTGTGGCAGTAGGATCGATAGCACGTTAGAGGGGACCAGGTCGATCCCCGGCTTGCG
CATTCTGCCTCTCCGGTCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
AGTTCATTCCATGTCTAAGCCCAGATCGG
Found at i:17824738 original size:26 final size:26
Alignment explanation
Indices: 17824689--17824740 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17824679 TTGGCTTAAT
*
17824689 CATACAGAGTTCATTCCATGTCTAAG
1 CATACAGAGTTCATTCCATATCTAAG
*
17824715 CATACGGAGTTCATTGCCA-ATCTAAG
1 CATACAGAGTTCATT-CCATATCTAAG
17824741 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATATCTAAG
Found at i:17824843 original size:185 final size:185
Alignment explanation
Indices: 17824529--17824900 Score: 469
Period size: 185 Copynumber: 2.0 Consensus size: 185
17824519 GTTGGCTTAG
* * ** * *
17824529 GCATACGGAGTTCATTCGCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCGCAATCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGCATCGATA
** ** * * * *
17824594 GTACGTTGGAGGGGACCAGGTCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCAC
66 ACACGCAGGAGGGGAACAGGCCGATCCCTGACTTACGCATTCTGCCCCTCCGGCCGACTGAGCAC
* *
17824659 CCACACACTCGTTTCATGGGTTGGCTTAATCATACAGAGTTCATTCCATGTCTAA
131 CCACACACTCGTTACATGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTCTAA
*
17824714 GCATACGGAGTTCATT-GCCAATCTAAGATCAGA-CTGGACCGAGGGTTGCAGCAGCAGCATCGG
1 GCATACGGAGTTCATTCG-CAATCTAAGATCAGATC-GGACCGAGGGTTGCAGCAGCAGCATCGA
* * * * * *
17824777 TAACACGCAGGAGGGGAACGGGCCGATCCCTGGCTTATGCGTTCTGCCCCTCTGGCCGATTGAGC
64 TAACACGCAGGAGGGGAACAGGCCGATCCCTGACTTACGCATTCTGCCCCTCCGGCCGACTGAGC
* * **
17824842 ACCCGCACACTCGTTACGTGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTCTAA
129 ACCCACACACTCGTTACATGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTCTAA
17824899 GC
1 GC
17824901 CCCAGCCGAA
Statistics
Matches: 158, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 2 0.01
185 156 0.99
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCGCAATCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGCATCGATA
ACACGCAGGAGGGGAACAGGCCGATCCCTGACTTACGCATTCTGCCCCTCCGGCCGACTGAGCAC
CCACACACTCGTTACATGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTCTAA
Found at i:17825975 original size:26 final size:26
Alignment explanation
Indices: 17825945--17825997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17825935 GTTGACTTTG
17825945 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
17825971 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17825997 G
1 G
17825998 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17826299 original size:159 final size:158
Alignment explanation
Indices: 17826100--17826473 Score: 357
Period size: 158 Copynumber: 2.4 Consensus size: 158
17826090 GACTGAGCAT
* * * **
17826100 CCGCATGCCCGTTTCACGGGTTGGTTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCCAACC
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG-GAGTTCATTCCATGTCTAAGCCCCAACC
* * * *
17826164 GGA-CTGAGGGTT-CTGGCAGCGGGA-CTGACAACATACAGAGTGGGATCGGGTCGATCCCCAGC
65 AGATC-GAGGGTTGC-GGCAGCAGGATC-GACAACATACAG-GGGGGACCGGGTCGATCCCCAGC
* *
17826226 TTGCGCATTATGCCTCTCCGGCCAGCT-CA-GC
126 TTGCACATTATACCTCTCCGGCCAGCTGCACGC
* *** **
17826257 ACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAATATCGGA
1 -C-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAA
* * * * * *
17826321 CCAGATCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGTGTCGGTCCCCGGCTT
63 CCAGATCGAGGGTTGCGGCAGCAGGATCGACAACATACAGGGGGGACCGGGTCGATCCCCAGCTT
* * * * *
17826386 GCACATTCTACCTTTTCGGCCGGTTGCACGC
128 GCACATTATACCTCTCCGGCCAGCTGCACGC
* *
17826417 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGC
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17826474 ATAGGGAGTT
Statistics
Matches: 174, Mismatches: 33, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.02
158 86 0.49
159 76 0.44
160 9 0.05
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCA
GATCGAGGGTTGCGGCAGCAGGATCGACAACATACAGGGGGGACCGGGTCGATCCCCAGCTTGCA
CATTATACCTCTCCGGCCAGCTGCACGC
Found at i:17826811 original size:26 final size:26
Alignment explanation
Indices: 17826781--17826833 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17826771 GTTGACTTAG
*
17826781 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
17826807 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17826833 G
1 G
17826834 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17827272 original size:160 final size:158
Alignment explanation
Indices: 17826807--17827310 Score: 548
Period size: 159 Copynumber: 3.2 Consensus size: 158
17826797 CCCAGTCTAA
* * * *
17826807 GCATACAGAGTTCATTGCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCTGGATCGGCA
1 GCATACAGAGTTCATT-CCAGTCTAAGACCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGCA
* * * * *
17826872 GCACGC-AGGGGGGACCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCCGAGTGC
65 GCACGCAAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGTGC
* *
17826936 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
** * **
17826965 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGTGGGA-CTGG
1 GCATACAGAGTTCATTCCA-GTCTAAG-ACCAGATCGGACCGAGGGTTGTGGTAGCAGGATC-GG
* * ** ** * * * *
17827028 CAGCACGCAAAGGAGGAGTGGGCCGATCCCCAACTTGTGTATTATGCCTCTCC-AGTCGGCTCAG
63 CAGCACGCAAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACT-GGCTGAG
* *
17827092 TGCCCGCACGTTCGTTTCGTGGGTTGACTTAT
127 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * *
17827124 GCATACAAAGTTCATTCCTAGTCTAAGACCAGATCGGACTAAGGATTGTGGCAGCAGGATCGACT
1 GCATACAGAGTTCATTCC-AGTCTAAGACCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGC-
**
17827189 AGCACGCAAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCA
64 AGCACGCAAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGTG
* *
17827254 CCCGCACGCTCGTTTCGTGGGTTGGCTCAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
**
17827284 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCA-GTCTAAG
17827311 CATACGAAGT
Statistics
Matches: 278, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.01
158 58 0.21
159 114 0.41
160 100 0.36
161 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCAGTCTAAGACCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGCAG
CACGCAAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17828338 original size:159 final size:159
Alignment explanation
Indices: 17828052--17828521 Score: 538
Period size: 159 Copynumber: 3.0 Consensus size: 159
17828042 AAGATCGAAT
** * ***
17828052 CGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTA-A-GAGGGATTGGGTCGATCCCCGACT
1 CGAACCGAGGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGA-GGACCAGGTCGATCCCCGACT
* * *
17828115 TGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCATGC-CTGTTTCTTGGGTTGGCTTAGGCA
65 TGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCA
**
17828179 TAGGGAGTTCATTCCATGTCTAAGCCCTAG-C
129 TACAGAGTTCATTCCATGTCTAAGCCC-AGAC
* * * *
17828210 CGAACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGTAGAGGAGGACCAGGTCGATCCCCAATTT
1 CGAACCGAGGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGAGGACCAGGTCGATCCCCGACTT
* * * * * *
17828275 GCGCATTATGCCTCTCCGACTGGTTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
66 GCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
**
17828340 CAGAGTTCATTCCCA-GTCTAAGATCAGAC
131 CAGAGTTCATT-CCATGTCTAAGCCCAGAC
* * * * * * * *
17828369 CGGACTGAGGGTTGTGGCAGCAGGATCGATAGTACGTTGGGGGGGACCAGGCCGATCCCTGACTT
1 CGAACCGAGGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGAGGACCAGGTCGATCCCCGACTT
* * *
17828434 GCGCATTCTACCTCTTCG-GTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCAT
66 GCGCATTCTGCCTCTTCGACT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
*
17828498 ACAAAGTTCATTCCATGTCTAAGC
130 ACAGAGTTCATTCCATGTCTAAGC
17828522 ATACGGAGTT
Statistics
Matches: 259, Mismatches: 46, Indels: 13
0.81 0.14 0.04
Matches are distributed among these distances:
158 39 0.15
159 214 0.83
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CGAACCGAGGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGAGGACCAGGTCGATCCCCGACTT
GCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
CAGAGTTCATTCCATGTCTAAGCCCAGAC
Found at i:17828654 original size:184 final size:184
Alignment explanation
Indices: 17828335--17829090 Score: 676
Period size: 184 Copynumber: 4.0 Consensus size: 184
17828325 GTTGACTTAG
* * ** * * **
17828335 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GGACTGAGGGTTGTGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAAC-GAGGGTTGCAGCAGCAGCATTGGC
* ** * * * *
17828399 AGTACGTTGGGGGGGACCAGGCCGATCCCTGACTTGCGCATTCTACCTCT-TCGGTCGGCTGAGC
65 AGCACG-CAGAGGGGACCAGGCCGATCCCTGACTTGCGCATTCTACCTCTCT-AGCCGACTGAGC
* * **
17828463 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
128 ACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
17828520 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCAGCA-AGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCAGCAGCAGCATTGGCA
* * * *
17828584 ACACGCAGGAGGGGACCAGGCCGATCCCTGGCTTGTGCATTCTACCTCTCTAGCCGATTGAGCAC
66 GCACGCA-GAGGGGACCAGGCCGATCCCTGACTTGCGCATTCTACCTCTCTAGCCGACTGAGCAC
* * * * *
17828649 CCGCACACTGGTTACGTGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTCTAA
130 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
** *
17828704 GCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGAACTAAGGGTTGTGGCAGCAGAACT
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGA-CCA-GAAC-GAGGG-T-T-GCAGCAG--C-
* * * ** * *
17828769 AGTAGCGGGATTGGCAGCACGCAGAGGGGGATCAGGCTGAT-CCTCGGCTTGCATATTATGCCTC
56 ---AGC---ATTGGCAGCACGCAGA-GGGGACCAGGCCGATCCCT-GACTTGCGCATTCTACCTC
* * * * *
17828833 TCCAGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCC
113 TCTAGCCGACTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCC
17828898 A-GTCTAA
177 ATGTCTAA
* * * * * * *
17828905 GCATATGGAGTTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCAGCAGCAGCATTGGCA
* * * * *
17828970 GCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCTTCTCTAGCCGACTGAGCACC
66 GCACGCAGAGGGGACCAGGCCGATCCCTGACTTGCGCATTCTACCTCTCTAGCCGACTGAGCACC
* * * * * *
17829035 CGAACGCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATATCTAA
131 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
17829089 GC
1 GC
17829091 CACAGCCGGA
Statistics
Matches: 463, Mismatches: 83, Indels: 51
0.78 0.14 0.09
Matches are distributed among these distances:
183 3 0.01
184 215 0.46
185 70 0.15
186 5 0.01
187 3 0.01
188 6 0.01
189 1 0.00
190 1 0.00
191 7 0.02
193 1 0.00
194 5 0.01
195 1 0.00
196 1 0.00
197 7 0.02
198 3 0.01
199 3 0.01
200 9 0.02
201 119 0.26
202 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCAGCAGCAGCATTGGCA
GCACGCAGAGGGGACCAGGCCGATCCCTGACTTGCGCATTCTACCTCTCTAGCCGACTGAGCACC
CGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17828713 original size:26 final size:26
Alignment explanation
Indices: 17828675--17828730 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
17828665 TGGGTTGGCT
*
17828675 TAAGCATATGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
17828701 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
17828727 TAAG
1 TAAG
17828731 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:17829268 original size:159 final size:158
Alignment explanation
Indices: 17828913--17829319 Score: 423
Period size: 159 Copynumber: 2.6 Consensus size: 158
17828903 AAGCATATGG
* * * * * *
17828913 AGTTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATTGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAAACCGGA-CGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
* * * * *
17828978 A-GGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCTTCTCTAGCCGACTGAGCACCCGAACGC
65 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTAGCCGACTCAGCACCCGAACGC
* *
17829042 CCATTTCGTGGGTTGACTTAGGCATAGGG
130 CCATTTCGTGGGTTGACTTAGGCATACGA
* * * * * *
17829071 AGTTCATT-CCATATCTAAG-CCACAGCCGGACTGAGGGTTGTGGCAGCGGGATCGACAGCACGC
1 AGTTCATTCCCA-GTCTAAGATCA-AACCGGAC-GAGGGTTGCGGTAGCAGGATCGACAGCACGC
* * * *
17829134 AGAGGGGGACCGGGCCGATCCCTGGCTTGCGGATTATGCCTCT-TCAGCTGGCTCAGCACCC-AC
63 AGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCT-AGCCGACTCAGCACCCGA-
* * *
17829197 ACGCTCATTTTGTGGGTTGACTTATGCATACGA
126 ACGCCCATTTCGTGGGTTGACTTAGGCATACGA
* * * *
17829230 AGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGCGATAGCAGGATCGACAACACGTAG
1 AGTTCATTCCCAGTCTAAGATCAAACCGGA-CGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
*
17829295 -GGGGG-TCGGGCCGATCCCCGGCTTG
65 AGGGGGACCGGGCCGATCCCCGGCTTG
17829320 ATCATTCTGC
Statistics
Matches: 202, Mismatches: 38, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
157 24 0.12
158 52 0.26
159 120 0.59
160 6 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAAACCGGACGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGA
GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTAGCCGACTCAGCACCCGAACGCC
CATTTCGTGGGTTGACTTAGGCATACGA
Found at i:17829415 original size:26 final size:26
Alignment explanation
Indices: 17829379--17829431 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17829369 GTTGGCTTAG
*
17829379 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17829405 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17829431 G
1 G
17829432 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17829798 original size:26 final size:26
Alignment explanation
Indices: 17829769--17829821 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17829759 GTTGACTTAG
17829769 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * * *
17829795 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17829821 G
1 G
17829822 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17830127 original size:159 final size:159
Alignment explanation
Indices: 17829949--17830298 Score: 363
Period size: 158 Copynumber: 2.2 Consensus size: 159
17829939 ACGGGTTGGC
* * * *
17829949 TTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA-CTGAGGGTT-CTGGCAACGGG
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATC-GAGGGTTGC-GGCAACAGG
* * * * *
17830011 A-CTGACAACATGTAGAGTGGGATCG-GATCGATCCCCAGCTTGCACATTATGCCTCTCCGGCCA
64 ATC-GACAACATGCA-AGAGGGACCGTG-CCGATCCCCAGCTTGCACATTATACCTCTCCGGCCA
17830074 GCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGAA
126 GCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGAA
* * * * **
17830108 TTAGGCATACGGAGTTCATTCCCA-GTCTAA-TATCGGACCAGATCGAGGGTTGCGGTAGTAGGA
1 TTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATCGAGGGTTGCGGCAACAGGA
* * *** * * * *
17830171 TCGACAGCATGCAAGAGGGACCGTGCCGGTCCTTGGCTTGCACATTCTACCTTTCCGGCCGGCTG
65 TCGACAACATGCAAGAGGGACCGTGCCGATCCCCAGCTTGCACATTATACCTCTCCGGCCAGCTC
**
17830236 AGCGCCCGCACGCTCGTTTCGTGGGTTGGC
130 AGCGCCCGCACGCTCGTTTCGTGGGTTGAA
17830266 TTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17830299 TACGAAGTTC
Statistics
Matches: 156, Mismatches: 27, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
157 3 0.02
158 94 0.60
159 53 0.34
160 6 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCGAGGGTTGCGGCAACAGGAT
CGACAACATGCAAGAGGGACCGTGCCGATCCCCAGCTTGCACATTATACCTCTCCGGCCAGCTCA
GCGCCCGCACGCTCGTTTCGTGGGTTGAA
Found at i:17830307 original size:26 final size:26
Alignment explanation
Indices: 17830270--17830321 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17830260 GTTGGCTTAG
*
17830270 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
17830296 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17830322 CATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17830673 original size:26 final size:26
Alignment explanation
Indices: 17830637--17830689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17830627 GTTGACTTAG
17830637 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17830663 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17830689 G
1 G
17830690 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17831040 original size:159 final size:158
Alignment explanation
Indices: 17830663--17831165 Score: 465
Period size: 159 Copynumber: 3.2 Consensus size: 158
17830653 CCCAGTCTAA
* * *
17830663 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * *
17830728 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGAATTCTGCCTCTCCAACCGGCTGAGCGCC
66 GCATGCAGGGGGGACCGAGCCGATCCCCGACTTGCGAATTATGCCTCTCCAACCGACTCAACGCC
* * *
17830793 CGCACGCCCTTTTCGTGGGTTGGCTTAG
131 CGAACGCCCATTTCGTGGGTTGACTTAG
* * ** * * * * * *
17830821 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCTAGTCGGACTGAGTGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACT-GGACCGAGGGTTGCGGTAGCAGGATCGG
* *
17830884 CAGCATGCCGAGGGGGACCGAGCTGATCCCCGACTTGC-AGATTATGCCTCTCCAACCGACTCAA
64 CAGCATGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGA-ATTATGCCTCTCCAACCGACTCAA
* *
17830948 TGCCCGAACGCTCATTTCGTGGGTTGACTTAG
127 CGCCCGAACGCCCATTTCGTGGGTTGACTTAG
* ** * *
17830980 GCATACGGAGTTAATTCCCAGTCTAAGATCGGACTAAACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * * *** * *
17831045 GCATGCAGGGAGGGACTGGGTCGGTCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGC
66 GCATGCAGGG-GGGACCGAGCCGATCCCCGACTTGCGAATTATGCCTCTCCAACCGACTCAACGC
* * * * *
17831110 CCGTACGCTCTTTTCGTGGGTTGGCTGAG
130 CCGAACGCCCATTTCGTGGGTTGACTTAG
*
17831139 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17831166 CATACAGAGT
Statistics
Matches: 272, Mismatches: 64, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 57 0.21
159 204 0.75
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCA
GCATGCAGGGGGGACCGAGCCGATCCCCGACTTGCGAATTATGCCTCTCCAACCGACTCAACGCC
CGAACGCCCATTTCGTGGGTTGACTTAG
Found at i:17831175 original size:26 final size:26
Alignment explanation
Indices: 17831139--17831192 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
17831129 GTTGGCTGAG
17831139 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17831165 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17831191 GC
1 GC
17831193 TCGAACCGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17831232 original size:12 final size:12
Alignment explanation
Indices: 17831215--17831258 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
17831205 GACGGTTGTG
17831215 GCAGCAGGACCA
1 GCAGCAGGACCA
* *
17831227 GCAGCAGGATCG
1 GCAGCAGGACCA
*
17831239 GTAGCAGGACCA
1 GCAGCAGGACCA
17831251 GCAGCAGG
1 GCAGCAGG
17831259 GGGGACCGGG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.30, C:0.27, G:0.39, T:0.05
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:17832055 original size:26 final size:26
Alignment explanation
Indices: 17832026--17832078 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17832016 GTTAGGTTAG
**
17832026 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17832052 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17832078 G
1 G
17832079 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17832773 original size:26 final size:26
Alignment explanation
Indices: 17832737--17832787 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17832727 TGACTTAGGT
* *
17832737 ATACGGAGTTCATCCCCCGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
*
17832763 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
17832788 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:17832949 original size:26 final size:26
Alignment explanation
Indices: 17832919--17832971 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17832909 GTTGACTTAG
17832919 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17832945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17832971 G
1 G
17832972 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17833866 original size:158 final size:156
Alignment explanation
Indices: 17833699--17834147 Score: 404
Period size: 159 Copynumber: 2.8 Consensus size: 156
17833689 TGACAGTAGA
* * *
17833699 ATCGACAGCATGCAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGACCGGC
1 ATCGACAGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GACCGGC
17833763 TGAGCACCCGCACACCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
65 TGAGC-CCCGCACACCTATTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCC
* *
17833828 CTAG-CCGAACTAAAGGTTGTAGCAGCAGG
128 C-AGACCGAACTAAAGGTTGCAGCAACAGG
** * * * *
17833857 ATCGACAGCACACAGAGGGGGACCGGGTCGGT-CCTGGACTTGCGCATTATGCCTCTTCGATCGG
1 ATCGACAGCATGCAG-GGGGGACCGGGTCGATCCCCGG-CTTGCGCATTCTGCCTCTTCGACCGG
* * * * * * * * *
17833921 CTTAGCGCC-CACACGTTTCCTTCATGGGTTGACTTAGGCATATGAAGTTCATTCCCA-ATCTAT
64 CTGAGCCCCGCACACCTAT--TTCGTGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAA
** * * *
17833984 GATCGGACCGAACTGAGGGTTGCAGCAACAGG
125 GCCCAGACCGAACTAAAGGTTGCAGCAACAGG
* * * * * * *
17834016 ATCGACAGCATGTAGGGGGAACCGGGTCGATCCCCGTCTTGCGCATTCTACCTTTTCGTCCGGTT
1 ATCGACAGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCT
* * *
17834081 GAGCGCCCGCACGCACTCTCATTTTGTGGGTTGGCTTAGGCATATGAATATCATTCCATGTCTAA
66 GAGC-CCCGCA--CAC-CT-ATTTCGTGGGTTGGCTTAGGCATAGGAGT-TCATTCCATGTCTAA
17834146 GC
125 GC
17834148 ATACGAAGTT
Statistics
Matches: 223, Mismatches: 52, Indels: 28
0.74 0.17 0.09
Matches are distributed among these distances:
157 7 0.03
158 59 0.26
159 111 0.50
160 7 0.03
161 5 0.02
162 32 0.14
163 1 0.00
164 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (156 bp):
ATCGACAGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCT
GAGCCCCGCACACCTATTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCAG
ACCGAACTAAAGGTTGCAGCAACAGG
Found at i:17834005 original size:159 final size:158
Alignment explanation
Indices: 17833623--17834062 Score: 399
Period size: 159 Copynumber: 2.8 Consensus size: 158
17833613 CGCATGCTCG
* * *
17833623 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATTGAGGGTT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTT
* * * ** * *
17833688 AT-GACAGTAGAATCGACAGCATGCAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTCTGCCT
66 GTAG-CAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCT
17833752 CTCTGACCGGCTGAGCACCCGCACACCTA
130 CTCTGACCGGCTGAGCACCCGCACACCTA
* * * * ** * *
17833781 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCTAGCCGAACTAAAGG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGAACTGAGGG
* * * *
17833844 TTGTAGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGTCGGT-CCTGGACTTGCGCATTATG
64 TTGTAGCAGCAGGATCGACAGCACACAG-GGGGGACCGAGCCGATCCCCGG-CTTGCGCATTATG
* * * * *
17833908 CCTCT-TCGATCGGCTTAGC-GCC-CACACGTT
127 CCTCTCT-GACCGGCTGAGCACCCGCACACCTA
* * * *
17833938 TCCTTCATGGGTTGACTTAGGCATATGAAGTTCATTCCCAATCTATGATCGGACCGAACTGAGGG
1 T--TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGG
* * *** * * * *
17834003 TTGCAGCAACAGGATCGACAGCATGTAGGGGGAACCGGGTCGATCCCCGTCTTGCGCATT
64 TTGTAGCAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATT
17834063 CTACCTTTTC
Statistics
Matches: 226, Mismatches: 45, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
157 12 0.05
158 99 0.44
159 110 0.49
160 5 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (158 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTT
GTAGCAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTC
TCTGACCGGCTGAGCACCCGCACACCTA
Found at i:17834689 original size:158 final size:159
Alignment explanation
Indices: 17834384--17835097 Score: 467
Period size: 158 Copynumber: 4.6 Consensus size: 159
17834374 ACCGGCAGCG
* * * **
17834384 GGATCGACAGCACGCAGAGGGGGATCGAG-CTGATCCCTGGCTTGCGCATTATGCCTCTCCAG-T
1 GGATCGGCAGCACGCAGAGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTTTAGCT
** * * * * * * *
17834447 CGGCTGAGTACCCGCATGCTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTTCCA-GTCT
65 -GGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA-TTCCATGTCT
***** *** * *
17834511 AAGTTTGGATTGGATCGAGGGTTGTGGTAGCT
128 AAGCCCCAACCAGACCGAGGGTTATGGTAGCT
* *
17834543 GGATCGGCAGCATGCA-AGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTTAGCTG
1 GGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTAGCTG
* * *
17834607 ACTGAGCGCCTGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * *
17834672 CCCCAACCAGACCGAGGGTTGTGGCAGCG
131 CCCCAACCAGACCGAGGGTTATGGTAGCT
* * * * * *
17834701 GGACCGGCAGCAGGTAGAGGGGGATCGGG-CTGATCCTCGGCTTGCGCATTATGCCTCTCT-GGT
1 GGATCGGCAGCACGCAGAGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTTTAGCT
* ** * * * * * ** *
17834764 AGGCTTAATGCCCGTACACTCATTTCATGGGTTGACTTAGACATACAGAGTTCATTCCCA-ATCT
65 -GGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCT
***** * *
17834828 AAGATTGGA-CAGACCGAGGGTTACGGTAGCA
128 AAGCCCCAACCAGACCGAGGGTTATGGTAGCT
* * * *
17834859 GGATCGAG-AGCACGCAG-GGGGGATCGGGTTGAT-CCC--C--G-GC-TTATGCAT-TCTACCT
1 GGATCG-GCAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTAGCT
*
17834914 --CT-A-CG---G-ACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * *
17834971 GCCCTAGCC-GAATCGAGGGTTATGGTAGCT
130 GCCCCAACCAG-ACCGAGGGTTATGGTAGCT
* * ** * * * *
17835001 GGA-CTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTAGCTTGTGCATTATGCCTTTTTGGCC
1 GGATC-GGCAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTAGCT
* * * *
17835065 GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
65 GGCTGAGCGCCCGTACGCCCGTTTCATGGGTTG
17835098 ATCCCCAACT
Statistics
Matches: 426, Mismatches: 97, Indels: 64
0.73 0.17 0.11
Matches are distributed among these distances:
140 3 0.01
141 42 0.10
142 31 0.07
143 13 0.03
144 2 0.00
145 1 0.00
146 2 0.00
147 2 0.00
148 1 0.00
149 5 0.01
150 15 0.04
151 5 0.01
152 1 0.00
153 2 0.00
154 2 0.00
155 2 0.00
156 2 0.00
157 19 0.04
158 153 0.36
159 120 0.28
160 3 0.01
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (159 bp):
GGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTAGCTG
GCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCCAACCAGACCGAGGGTTATGGTAGCT
Found at i:17835562 original size:25 final size:27
Alignment explanation
Indices: 17835524--17835574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
17835514 GTTGACTTAG
17835524 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
*
17835550 GCATAC-GAGTTCATTTCCCAGTCTA
1 GCATACGGAGTTCATTCCCCAGTCTA
17835575 GGATCAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCCAGTCTAA
Found at i:17835876 original size:159 final size:158
Alignment explanation
Indices: 17835606--17836210 Score: 501
Period size: 159 Copynumber: 3.8 Consensus size: 158
17835596 TGCAGCAGCA
* * * * * * * * *
17835606 GGATCGATAGCACGCAG-GGGGGATCAGGTCGATCCTCGGCTTAGC--ATTCTGCCTCTCCGGTC
1 GGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTT-GCGTATTATGCCTCTCTGGCC
* * * * * * * * *
17835668 GACTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCATGTCTAA
* * *
17835733 GCCCCAGCCGGACCGAGTGTTGTGGCAATG
130 GCCCCAG-CGGATCGAGGGTTGTGGCAGTG
* *
17835763 GGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCT-TCGGCC
1 GGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTCT-GGCC
** * * *
17835827 ATCTTAGCGCCCGTACGCTCATTTCGTGGGTTGACTTATGCAAACGGAGTTCATTCCCA-GTCTA
65 GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAAACGGAGTTCATT-CCATGTCTA
*** *** **
17835891 AG-ATAAGATCGGATCGAGGGTTACAGCAGCA
129 AGCCCCAG--CGGATCGAGGGTTGTGGCAGTG
* * * * * *
17835922 AGATCGACACCACGTAG-GGGGGATCGGGCCGATCCCCGGCTTGAGTATTCTGCCTCTCTGGTCG
1 GGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTCTGGCCG
* * * *
17835986 GCTGAGCGCCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATAA-GGAGTTCATTCCATGTCTAA
66 GCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA-AACGGAGTTCATTCCATGTCTAA
*
17836050 ACCCCAGCGAGATCGAGGGTTGTGGCAGTG
130 GCCCCAGCG-GATCGAGGGTTGTGGCAGTG
* * * * * * ** *
17836080 GGA-CCACCTGCAGGTAGAAGGGGACCAGGCCCATCCCTAGCTTGCGCATTATGCCTCTCTGGCC
1 GGATCGA-CAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTCTGGCC
* * ** *
17836144 GGCTCAACGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTA
65 GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCAT-GTCTA
17836208 AGC
129 AGC
17836211 ATACGGAGTG
Statistics
Matches: 350, Mismatches: 83, Indels: 28
0.76 0.18 0.06
Matches are distributed among these distances:
157 24 0.07
158 139 0.40
159 184 0.53
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTCTGGCCG
GCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCATGTCTAAG
CCCCAGCGGATCGAGGGTTGTGGCAGTG
Found at i:17836069 original size:158 final size:157
Alignment explanation
Indices: 17835589--17836071 Score: 499
Period size: 158 Copynumber: 3.1 Consensus size: 157
17835579 CAGATCAGAC
* * * * *
17835589 CGAGGGTTGCAGCAGCAGGATCGATAGCACGCAGGGGGGATCAGGTCGATCCTCGGCTT-AGCAT
1 CGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGAGTAT
* * * * * *
17835653 TCTGCCTCTCCGGTCGACTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTCTGGTCGACTGAGCGCCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGT
* *
17835718 TCATTCCATGTCTAAGCCCCAGCCGGAC
131 TCATTCCATGTCTAAACCCCAG-CGGAT
* ** *** * * *
17835746 CGAGTGTTGTGGCAATGGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTA
1 CGAGGGTTGCAGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGAGTA
* * * * * * *
17835811 TTATGCCTCT-TCGG-CCATCTTAGCGCCCGTACGCTCATTTCGTGGGTTGACTTATGCA-AACG
65 TTCTGCCTCTCT-GGTCGA-CTGAGCGCCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATAA-G
**** *
17835873 GAGTTCATTCCCA-GTCTAAGATAAGATCGGAT
127 GAGTTCATT-CCATGTCTAA-ACCCCAGCGGAT
* * * *
17835905 CGAGGGTTACAGCAGCAAGATCGACACCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGAGTAT
1 CGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGAGTAT
* *
17835970 TCTGCCTCTCTGGTCGGCTGAGCGCCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGT
66 TCTGCCTCTCTGGTCGACTGAGCGCCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGT
17836035 TCATTCCATGTCTAAACCCCAGCGAGAT
131 TCATTCCATGTCTAAACCCCAGCG-GAT
17836063 CGAGGGTTG
1 CGAGGGTTG
17836072 TGGCAGTGGG
Statistics
Matches: 253, Mismatches: 61, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
157 33 0.13
158 124 0.49
159 92 0.36
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
CGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGAGTAT
TCTGCCTCTCTGGTCGACTGAGCGCCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGT
TCATTCCATGTCTAAACCCCAGCGGAT
Found at i:17836133 original size:317 final size:316
Alignment explanation
Indices: 17835556--17836682 Score: 848
Period size: 317 Copynumber: 3.6 Consensus size: 316
17835546 CTAAGCATAC
* * * * * *
17835556 GAGTTCATTTCCCAGTCTAGGATCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGATAGCACGC
1 GAGTTCA-TTCCCAGTCTAAGATAAGATCAGACCGAGGGTTACAGCAGCAAGATCGACACCACGC
* * *
17835621 AGGGGGGATCAGGTCGATCCTCGGCTTAGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCATGC
65 AGGGGGGATCAGGCCGATCCCCGGCTTAGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCAAGC
* * * * *
17835686 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGT
130 CCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGG
* * * * * * *
17835751 GTTGTGGCAATGGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATG
195 GTTGTGGCAATGGGATCCACAGCAGGCAGAAGGGGACCAGGCCCATCCCCAGCTTGCGCATTATG
* * * * * *
17835816 CCTCT-TCGGCCATCTTAGCGCCCGTACGCTCATTTCGTGGGTTGACTTATGCAAACG
260 CCTCTCT-GGCCAGCTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCAAACG
* * *
17835873 GAGTTCATTCCCAGTCTAAGATAAGATCGGATCGAGGGTTACAGCAGCAAGATCGACACCACGTA
1 GAGTTCATTCCCAGTCTAAGATAAGATCAGACCGAGGGTTACAGCAGCAAGATCGACACCACGCA
* * * * *
17835938 GGGGGGATCGGGCCGATCCCCGGCTTGAGTATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCAAGC
66 GGGGGGATCAGGCCGATCCCCGGCTT-AGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCAAGC
* *
17836003 TCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAG-CGAGATCGAG
130 CCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCG-GACCGAG
* * * *
17836067 GGTTGTGGCAGTGGGA-CCACCTGCAGGTAGAAGGGGACCAGGCCCATCCCTAGCTTGCGCATTA
194 GGTTGTGGCAATGGGATCCA-CAGCAGGCAGAAGGGGACCAGGCCCATCCCCAGCTTGCGCATTA
* ** *
17836131 TGCCTCTCTGGCCGGCTCAACGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACG
258 TGCCTCTCTGGCCAGCTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCAAACG
* * ** * * * *
17836190 GAGTTCATTCCTAGTCTAAGCATACGGAGTGCATTCCCA--GTCTA-AG-ATC-CGACCGA-A--
1 GAGTTCATTCCCAGTCTAAG-ATA-AGA-T-CAGACCGAGGGT-TACAGCAGCAAGATCGACACC
* * ** *** * * *
17836247 ACG-AGGGTTACGGCAGCATGATCGA-CAGCACGCAGG-GGGGGA-TCGGGCCGATCCCCGGT--
61 ACGCAGGG----GGGATCA-GGCCGATC--C-C-C-GGCTTAGCATTC-TGCC--TCTCCGGTCG
* * * * *
17836306 --TGAGCGCCCGCACGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
113 ACTGAGCACCCGCAAGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAA
** * * * **** * * * **
17836369 CCCCAGATGGACCAAGGGTCGTGGCAACGGGATTGGTAACAGGTAGAGGGGGACC-GGACTGATC
178 CCCCAGCCGGACCGAGGGTTGTGGCAATGGGATCCACAGCAGGCAGAAGGGGACCAGG-CCCATC
*
17836433 CCC-GACTTGCGCATTATGCCTCTCTGG-TAGGCTCAACGCCCGCACACTCATTTCGTGGGTTGA
242 CCCAG-CTTGCGCATTATGCCTCTCTGGCCA-GCTCAACGCCCGCACACTCATTTCGTGGGTTGA
*
17836496 CTTAGGCATACG
305 CTTAGGCAAACG
* ** * * * * *
17836508 GAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACAACACACA
1 GAGTTCATTCCCAGTCTAAGATAAGATCAGACCGAGGGTTACAGCAGCAAGATCGACACCACGCA
* * * * * ** * * * *
17836573 -GGGGGA-CTGGGTCGATCCCTGACTTACGCATTCTGCCTATCCGACCGGCTGAACGCCCGCACG
66 GGGGGGATC-AGGCCGATCCCCGGCTTA-GCATTCTGCCTCTCCGGTCGACTGAGCACCCGCAAG
** * *
17836636 TTCGTTTCGTGGGTT-GCTTAGGCATACA-GAGTTCATTCCATGTCTAA
129 CCCATTTCATGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAA
17836683 GCATAAGACT
Statistics
Matches: 641, Mismatches: 123, Indels: 94
0.75 0.14 0.11
Matches are distributed among these distances:
312 5 0.01
313 4 0.01
314 14 0.02
315 35 0.05
316 112 0.17
317 231 0.36
318 203 0.32
319 11 0.02
320 9 0.01
321 8 0.01
322 9 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
GAGTTCATTCCCAGTCTAAGATAAGATCAGACCGAGGGTTACAGCAGCAAGATCGACACCACGCA
GGGGGGATCAGGCCGATCCCCGGCTTAGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCAAGCC
CATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGG
TTGTGGCAATGGGATCCACAGCAGGCAGAAGGGGACCAGGCCCATCCCCAGCTTGCGCATTATGC
CTCTCTGGCCAGCTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCAAACG
Found at i:17836219 original size:26 final size:26
Alignment explanation
Indices: 17836183--17836235 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17836173 GTTGACTTAG
* *
17836183 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
17836209 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
17836235 G
1 G
17836236 ATCCGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:17837053 original size:26 final size:26
Alignment explanation
Indices: 17837024--17837076 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17837014 GTTGACTTAG
*
17837024 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACGGAGTTCACTCCC-AGTCTAA
17837050 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
17837076 G
1 G
17837077 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:17837402 original size:26 final size:26
Alignment explanation
Indices: 17837366--17837418 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17837356 GTTCGCTTAG
17837366 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17837392 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17837418 G
1 G
17837419 ATTAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17837776 original size:26 final size:26
Alignment explanation
Indices: 17837746--17837798 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17837736 GTAGACTTAG
17837746 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
17837772 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17837798 G
1 G
17837799 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17838054 original size:722 final size:708
Alignment explanation
Indices: 17836585--17838105 Score: 1664
Period size: 722 Copynumber: 2.1 Consensus size: 708
17836575 GGGACTGGGT
* * * * * * * **
17836585 CGATCCCTGACTTACGCATT-CTGCCTATCCGACCGGCTGAACGCCCGCACGTTCGTTTCGTGGG
1 CGATCCCCGACTTACGCATTAC-ACCTCTCCAACCGGCTCAGCACCCGCACACTCGTTTCGTGGG
* *
17836649 TTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAAGACTTCATTCCCAATCTAAGATCGG
65 TTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGACTTCATTCCCAATCTAAGATCAG
* * * * * *
17836714 ACCGAACCGAGGGTTACGGCAGCAGGACCAGCAGCAAGATCGGTAGCACGTAGGGGTGGATCGAG
130 ACCGAACCGAGGGTTACGACAGCAGGACCAGCAGCAAGATCGGCACCACGCAGGGGTGCACCGAG
* * * ** *
17836779 CCAATCCCCGGCTTGTGCATTCTGCCTCTCCGACTGACTGAGCACCTGCATGCTTGTTTCGTGGG
195 CCAATCCCCGACTTGCGCATTCTACCTCTCCGACTGACTGAGCACCCACACGCTTGTTTCGTGGG
* *
17836844 TTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACTGAGGGTTGTGGCAGCA
260 TTAGCTTAGACATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAAACTGAGGGTTGTGGCAGCA
* * * * * * ** * *
17836909 AGATCAGTAGCGGGATCGACAGCATGCAGAGGGGGTCTGGACCGATCCTTGGGTGGCACATTATG
325 AGACCAGAAACAGGATCGACAGCACGCAGAGGGGGTCTGGACCAATCCCCGGCTGACACATTATG
* * * * *
17836974 CCTCTCTGGCCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTAT
390 CCTCTCCGACCGATTGAGCACCCGCACGCTCGTTTCATGGGTAGACTTAGGCATACAGAGTTCAT
*
17837039 CCCTAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGAGGGTCGTGTAGC
455 CCCTAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGAGGGTCGTGTAGC
* * * *
17837104 AGCATCGACAGCACACAAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCAGGTCG
520 AGCATCGACAGCACACAAGGGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCAGGCCG
* * * ** *
17837169 GTTGAGCACCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATG
585 GCTAAGCACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
** ** * *
17837234 CCGCATTCGGATCGAGGGTTGTGCCAACAAGATTGGCAGCATGCAGAGGGGGACCAAGC
650 CCGCAGCCGGATCGAGGGTTGTGCCAACAAGACCGGCAGCACGCAGAAGGGGACCAAGC
* * *
17837293 CGATCCCCGACTTACGCATTACACCTCTCCAACCGGCTCATCGCCCGCGCACTCGTTTCGTGGGT
1 CGATCCCCGACTTACGCATTACACCTCTCCAACCGGCTCAGCACCCGCACACTCGTTTCGTGGGT
** * * *
17837358 TCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATTA
66 T-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT-AAGACTTCATTCCCAATCTAAGATCA
** * * * *
17837423 GATTGGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGGCACCACGCAGGGG-GCACCGG
129 GACCGAACCGAGGGTTACGACAGCAGGACCAGCAGCAAGATCGGCACCACGCAGGGGTGCACCGA
* **
17837487 GCCAATCCCCGACTTGCGCATTCTACCTCTCCG-GTCGGTTGAGCACCCACACGCTTGTTTCGTG
194 GCCAATCCCCGACTTGCGCATTCTACCTCTCCGACT-GACTGAGCACCCACACGCTTGTTTCGTG
* *
17837551 GGTTGGCTTAGACATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAG
258 GGTTAGCTTAGACATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAAACTGAGGGTTGTGGCAG
* * * * * *
17837616 CAGGACCGGAAACAGGATCGACAGCACGTAGAGGGGGATC--GAGCTAATCCCCGGCTTACGCAT
323 CAAGACCAGAAACAGGATCGACAGCACGCAGAGGGGG-TCTGGA-CCAATCCCCGGCTGACACAT
* * *
17837679 TATGCCTCTCCGACCGGCATCTCCGGCCGGCTGAGTGCCTGCATGCTCGTTTCATGGGTAGACTT
386 TATGCCTCTCCGACC-G-AT-T---G--AGC--A---CCCGCACGCTCGTTTCATGGGTAGACTT
* * *
17837744 AGGCATACAGAGTTCATCTCC-AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCG
438 AGGCATACAGAGTTCATC-CCTAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCGGACCA
* * * * *
17837808 GATCGAAGGGTTGCG-GTAGCAGGATCGACAGCACAC-A-GGGGACC-AGGTCGATCTCCAATTT
502 GACCG-AGGG-T-CGTGTAGCAGCATCGACAGCACACAAGGGGGACCGA-GCCGATCCCCAACTT
* ** *
17837869 ACGCATTCTGCCTCTCCTGCCGGCTAAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
563 ACGCATTCTACCTCTCAGGCCGGCTAAGCACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
* * * *
17837934 CAGAGTTCATTCCATGTCTAAGACC-CAGCCGGA-CTGAGGGTTGTGGCAGCGAGACCGGTAGCA
628 CAGAGTTCATTCCATGTCTAAG-CCGCAGCCGGATC-GAGGGTTGTGCCAACAAGACCGGCAGCA
**
17837997 CGCAGAAGGGGACCGGGC
691 CGCAGAAGGGGACCAAGC
* ** * * * * * *
17838015 CGATCCTCGACTTACAG-ATTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTCATTTTGTGGG
1 CGATCCCCGACTTAC-GCATTACACCTCTCCAACCGGCTCAGCACCCGCACACTCGTTTCGTGGG
* * *
17838079 TTGACTTATGCATACGAAGTTTATTCC
65 TTG-CTTAGGCATACGGAGTTCATTCC
17838106 CAATCTGAGA
Statistics
Matches: 670, Mismatches: 115, Indels: 42
0.81 0.14 0.05
Matches are distributed among these distances:
708 58 0.09
709 208 0.31
710 71 0.11
711 2 0.00
712 1 0.00
715 1 0.00
717 2 0.00
719 1 0.00
721 3 0.00
722 290 0.43
723 10 0.01
724 21 0.03
725 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (708 bp):
CGATCCCCGACTTACGCATTACACCTCTCCAACCGGCTCAGCACCCGCACACTCGTTTCGTGGGT
TGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGACTTCATTCCCAATCTAAGATCAGA
CCGAACCGAGGGTTACGACAGCAGGACCAGCAGCAAGATCGGCACCACGCAGGGGTGCACCGAGC
CAATCCCCGACTTGCGCATTCTACCTCTCCGACTGACTGAGCACCCACACGCTTGTTTCGTGGGT
TAGCTTAGACATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAAACTGAGGGTTGTGGCAGCAA
GACCAGAAACAGGATCGACAGCACGCAGAGGGGGTCTGGACCAATCCCCGGCTGACACATTATGC
CTCTCCGACCGATTGAGCACCCGCACGCTCGTTTCATGGGTAGACTTAGGCATACAGAGTTCATC
CCTAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGAGGGTCGTGTAGCA
GCATCGACAGCACACAAGGGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCAGGCCGG
CTAAGCACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
CGCAGCCGGATCGAGGGTTGTGCCAACAAGACCGGCAGCACGCAGAAGGGGACCAAGC
Found at i:17838969 original size:26 final size:26
Alignment explanation
Indices: 17838939--17838991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17838929 GTTGACTTAG
17838939 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17838965 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17838991 G
1 G
17838992 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17839440 original size:158 final size:156
Alignment explanation
Indices: 17838965--17839466 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 156
17838955 CCCAGTCTAA
* * *
17838965 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGACA
* ** * * * * *
17839030 GCACGTATAGGGAACTAGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACC
66 GCACGCAGGGGGGACCAGGCCGAT-CCCGGCTTGCACATTATGCCTCTCC-GCCAGCTGAGCGCC
* *
17839095 CGCATGCCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * *
17839123 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAGCCAAACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGA
* * * * * * *
17839186 CAGCACGCAGAGGGGGA-CTGGACCGGTCCCTGGCTTGCTCATTATGGCTCTTCGACCGGCTCAG
64 CAGCACGCAG-GGGGGACCAGG-CCGATCCC-GGCTTGCACATTATGCCTCTCCG-CCAGCTGAG
* * *
17839250 CGCCTGCACGCTCATTTCGTGGGTTGACTTAG
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *** * * *
17839282 GCATACGAAGTTCATTCCCAATCTAAGATTGGACCGGACCAAGGGTTAAGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGACA
* * * *
17839347 GCATGCAGGGGGGACCAGGCCGATCTCCGGCTTGCGCATTTTGCCTCTCCAGCCAACTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATC-CCGGCTTGCACATTATGCCTCTCC-GCCAGCTGAGCGCC
*
17839412 CGCACGCTCGTTTCGTCGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17839440 GCATACGGAGTTTATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17839467 CATACGGAGT
Statistics
Matches: 271, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 145 0.54
159 115 0.42
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCCGATCCCGGCTTGCACATTATGCCTCTCCGCCAGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17839469 original size:26 final size:26
Alignment explanation
Indices: 17839440--17839492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17839430 GTTGGCTTAG
*
17839440 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
17839466 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17839492 G
1 G
17839493 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17840540 original size:158 final size:159
Alignment explanation
Indices: 17840232--17840817 Score: 528
Period size: 158 Copynumber: 3.7 Consensus size: 159
17840222 ACCGAGCAAT
* * * * * * **
17840232 GGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCTG-CCGGCTCAGCACCCGCACGCTC
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGACCGGCTAAGTGCCCGCACGCTC
* * * * ** * * *
17840296 ATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGATCA-GACCGAACTGAGA
65 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGGACCGGACCGAGG
* *
17840359 GTTGCAGTAGTAGGATCGACAGCACGCTG-GG
129 GTTGCA-CAGCAGGATCGACAGCACGCTGAGG
* * * * * * *
17840390 GGGATCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCGATCAGCTGAGCGCCCGCATGCCCG
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCTCG
* * * * * *
17840455 TTTCATGGGTTGGCTCAGGCATAGGGCGTTGATTCCATTTCTAAGCCCCA-G-TCGGACCGAGGG
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGGACCGGACCGAGGG
* * * **
17840518 CTGTGC-CAGCAGGA-CTGGCAGCATGCAGAAA
130 -T-TGCACAGCAGGATC-GACAGCACGCTGAGG
* * * * * *
17840549 GGGATCGGACCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCA
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCTCG
* * **
17840614 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCA-GTCTAAG-TTAGGACCGGACCGAGGGT
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGGACCGGACCGAGGGT
*
17840677 TGCAGCAGTAGGATCGACAGCACG-TAGAGG
131 TGCA-CAGCAGGATCGACAGCACGCT-GAGG
* * * * *
17840707 GGGACCTGGCTGATCCCCGGCTTGCGCATTCTGCTTCTCCGACCGGCTAAGTGCCCGTACGCTCG
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCTCG
*
17840772 TTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17840818 ATACAGAGTT
Statistics
Matches: 338, Mismatches: 75, Indels: 28
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.01
157 9 0.03
158 226 0.67
159 96 0.28
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGGACCGGACCGAGGGT
TGCACAGCAGGATCGACAGCACGCTGAGG
Found at i:17840817 original size:317 final size:317
Alignment explanation
Indices: 17840232--17840817 Score: 854
Period size: 317 Copynumber: 1.8 Consensus size: 317
17840222 ACCGAGCAAT
* *
17840232 GGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCTGCCGGCTCAGCACCCGCACGCTCA
1 GGGACCGGACCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCA
*
17840297 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGAGTT
66 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGAGTT
* * *
17840362 GCAGTAGTAGGATCGACAGCACGCTGGGGGGATCGGGCCGATCCCCGGCTTGCGTATTCTGCCTC
131 GCAGCAGTAGGATCGACAGCACGCTGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC
* * * * *
17840427 TCCGATCAGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTCAGGCATAGGGCGTTGATTCCA
196 TCCGACCAGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTCAGGCATAGGGAGTTCATTCCA
*
17840492 TTTCTAAGCCCCAGTCGGACCGAGGGCTGTGCCAGCAGGACTGGCAGCATGCAGAAA
261 TGTCTAAGCCCCAGTCGGACCGAGGGCTGTGCCAGCAGGACTGGCAGCATGCAGAAA
* * * **
17840549 GGGATCGGACCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCA
1 GGGACCGGACCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCA
* * * *
17840614 TTTCATGGGTTGACTTATGCATACGGAGTTCATT-CCAGTCTAAG-TTAGGACCGGACCGAGGGT
66 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCA-GACCGAACCGAGAGT
* *
17840677 TGCAGCAGTAGGATCGACAGCACG-TAGAGGGGGACCTGGCTGATCCCCGGCTTGCGCATTCTGC
130 TGCAGCAGTAGGATCGACAGCACGCT-G-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGC
* * * * * * *
17840741 TTCTCCGACCGGCTAAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATT
193 CTCTCCGACCAGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTCAGGCATAGGGAGTTCATT
17840806 CCATGTCTAAGC
258 CCATGTCTAAGC
17840818 ATACAGAGTT
Statistics
Matches: 236, Mismatches: 30, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
315 3 0.01
316 45 0.19
317 188 0.80
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (317 bp):
GGGACCGGACCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCA
TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGAGTT
GCAGCAGTAGGATCGACAGCACGCTGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC
TCCGACCAGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTCAGGCATAGGGAGTTCATTCCA
TGTCTAAGCCCCAGTCGGACCGAGGGCTGTGCCAGCAGGACTGGCAGCATGCAGAAA
Found at i:17841517 original size:26 final size:26
Alignment explanation
Indices: 17841480--17841531 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17841470 GTTGGCTTAG
17841480 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17841506 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
17841532 TATTTTAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17842094 original size:703 final size:690
Alignment explanation
Indices: 17840750--17842117 Score: 2060
Period size: 703 Copynumber: 2.0 Consensus size: 690
17840740 CTTCTCCGAC
* **
17840750 CGGCTAAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
1 CGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* * * *
17840815 AGCATACAGAGTTCATTCCCAGTCTAAAATTTTGAGCTAGGTGCACATGCTGGGCACGGGCATGT
66 AGCATACAGAGTTCATTCCCAGTCTAAAATTTTAAGCCAGATGCACATGCTGGGCACGAGCATGT
* * *
17840880 GCTGGTGCCGCATTTTTTTTGCCCGAGGCACCATCGCCGGAGAGCCTAACCGGCGACATTGGTGG
131 GCTGGTGCCGCATTTTTTTCGCCCGAGGCACCATCGCCGGAGAGCCTAACCGACGACATTGGGGG
* * *
17840945 TTCCGACGATTGGTGGGGCCGGGGGGTTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCC
196 TTCCGACGATTGGGGGGGCCGGGGGATTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
17841010 TTATATTGGCCCCCTATTCCTCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
261 TTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
17841075 TTTTATAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTC
326 TTTTATAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTC
* ** * **
17841140 ACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAAAAAAAATACAAGG
391 AAAAAATCTTCTCCACTTAAAGTTTTAAGCTGAAGTTTTTTGTGCACACCAAAAAAAATACAAGG
* * * **
17841205 ATCACCTCTACCAAGTTTGGGGACAAAAGTCTTTCTAAAAAAATTTTAAAAAATCCTGAATCGCA
456 ATCACCTCTACCAAATTTGGGGACAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCAAATCGCA
* * ** *
17841270 AAAGGTTTCGAAAATCGTGACAAATAGAAAACGGGTTGTCTTGCCACGAAACTTCAGATGAAGGC
521 AAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGC
* * **
17841335 TGAGGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGGCAGAAATATGAAGA
586 TGAGGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGA
*
17841400 TGTGCCTGGACCCACGGCTTACGTATTTTACCTCTCTGGT
651 TGTGCCTGAACCCACGGCTTACGTATTTTACCTCTCTGGT
* * *
17841440 CGGCTGAGTGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
1 CGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* *
17841505 AGCATAC-GAAGTTCATTCCCAGTCTAATATTTTAAGCCACGATGCACATGCTGGGCTCGAGCAT
66 AGCATACAG-AGTTCATTCCCAGTCTAAAATTTTAAGCCA-GATGCACATGCTGGGCACGAGCAT
* * *
17841569 GTGCTGGTGCTGCATTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAGCCTAACCG
129 GTGCTGGTGCCGCATTTTTTTCGCCCGAGG---CA----C----CATCGCCGGAGAGCCTAACCG
17841634 AC-AGCATTGGGGGTTCCGACGATTGGGGGGGCCGGGGGATGTGCGCACATGATGTGCGATGGGT
183 ACGA-CATTGGGGGTTCCGACGATTGGGGGGGCCGGGGGAT-TGCGCACATGATGTGCGATGGGT
*
17841698 TCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTT
246 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTT
*
17841763 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
311 AAAGAGCATTTGAGATTTTATAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
17841828 TTTTTTCAAACGGTCAAAAAATCTTCTGCACTTCAAAG-TTTAAGCTGAATTTTTTTGTGCACAC
376 TTTTTTCAAACGGTCAAAAAATCTTCTCCACTT-AAAGTTTTAAGCTGAAGTTTTTTGTGCACAC
* * *
17841892 CAACAAAAATATAAGGATCACCTCTACCAAATTTGGGGTCAAAACTCTTTCCAAAAAAATTTTAA
440 CAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCCAAAAAAATTTTAA
17841957 AAAATCCCAAA-CTGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACG
505 AAAATCCCAAATC-GCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACG
* * *
17842021 AAACTTCACATGAAGGCTTAGGGAACCATTGTATGAATTTACATGTCATAAAAATGGCATTGGCA
569 AAACTTCACATGAAGGCTGAGGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
17842086 CAGCAGAAATATGAAGATGTGCCTGAACCCAC
634 CAGCAGAAATATGAAGATGTGCCTGAACCCAC
17842118 CGACCACTCG
Statistics
Matches: 606, Mismatches: 55, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
689 1 0.00
690 93 0.15
691 47 0.08
694 2 0.00
698 1 0.00
701 1 0.00
702 56 0.09
703 403 0.67
704 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (690 bp):
CGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
AGCATACAGAGTTCATTCCCAGTCTAAAATTTTAAGCCAGATGCACATGCTGGGCACGAGCATGT
GCTGGTGCCGCATTTTTTTCGCCCGAGGCACCATCGCCGGAGAGCCTAACCGACGACATTGGGGG
TTCCGACGATTGGGGGGGCCGGGGGATTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTATAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTC
AAAAAATCTTCTCCACTTAAAGTTTTAAGCTGAAGTTTTTTGTGCACACCAAAAAAAATACAAGG
ATCACCTCTACCAAATTTGGGGACAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCAAATCGCA
AAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGC
TGAGGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGA
TGTGCCTGAACCCACGGCTTACGTATTTTACCTCTCTGGT
Found at i:17842588 original size:158 final size:157
Alignment explanation
Indices: 17842229--17842598 Score: 345
Period size: 158 Copynumber: 2.3 Consensus size: 157
17842219 CCCAGCCTAA
* * * * * * *
17842229 GCATACAGAGTTCATTCCCAGTCTATGATC-GAACTGGTCCGAGGGTCGCGGCAGTAGGATCAGC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGGAGGACCAGC
* * * *
17842293 AGCACGCAAGGGGGACCGGGCCAGTCCCTGGCTTACGCATTGTGCCTCTTCAGCCGGCTAAGCGC
64 AGCACGCAAGGGGGACCGGGCCAGTCCCCGGCTTACGCATTATGCCTCTTCAGCAGGCTAAGCAC
* *
17842358 CCGCACGCCCGTTTCATGGTTTGGCTTAG
129 CCGCACGCCCGTTTCATGGGTTGACTTAG
* ** * * * *
17842387 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCAGATCGAGGGTTGTGGCAGCGA-GACCGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAG-GAGGACCAG
* * * * *
17842450 CAGCACGCAGAGGGGGACCTGGTC-GATCCCCGGCTTGCGCATTATGCCTCTTCGGCAGGCTCAG
63 CAGCACGCA-AGGGGGACCGGGCCAG-TCCCCGGCTTACGCATTATGCCTCTTCAGCAGGCTAAG
* * * * * *
17842514 TACCTGTA-GCTCGTTTCGTGGGTTGACTTAT
126 CACCCGCACGCCCGTTTCATGGGTTGACTTAG
*
17842545 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
17842599 TAAGACTGGG
Statistics
Matches: 166, Mismatches: 38, Indels: 16
0.75 0.17 0.07
Matches are distributed among these distances:
157 5 0.03
158 110 0.66
159 51 0.31
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGGAGGACCAGCAG
CACGCAAGGGGGACCGGGCCAGTCCCCGGCTTACGCATTATGCCTCTTCAGCAGGCTAAGCACCC
GCACGCCCGTTTCATGGGTTGACTTAG
Found at i:17842733 original size:26 final size:26
Alignment explanation
Indices: 17842683--17842735 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17842673 GTTAGCTTAG
*
17842683 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17842709 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17842735 G
1 G
17842736 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17843807 original size:159 final size:157
Alignment explanation
Indices: 17843429--17843807 Score: 381
Period size: 159 Copynumber: 2.4 Consensus size: 157
17843419 CCCAGTCTAA
* * * *
17843429 GCATACGGAGTTCATTCCTAGTGTAAGATCAAACCGGGCCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG-AGGACCGGCA
* * *
17843494 GCACGCAGGAAGGACCGGGTCGATCCCCAGCTTGCGGATTCTGCCTCTCCGGCCAGCTGAGCACC
65 GCACGCAGGAAGGACCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGACAGCTGAGCACC
*
17843559 CGCACACCCATTTCATGGGTTGGCTTAG
130 CGCACACCCATTTCATGGGTTGACTTAG
* ** * *
17843587 GTATA-GCGAGTTCATTCC-ATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCA-ACGAGACC
1 GCATACG-GAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGA-G-GACC
* * ** * * * *
17843648 GGCAGCATGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTC-GATAGGCTT
61 GGCAGCACGCAG-GAAGGACCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGACA-GCTG
* * * * * *
17843712 AGTACCCGCACGCTCGTTTCGTGGGTTGACTTAT
124 AGCACCCGCACACCCATTTCATGGGTTGACTTAG
* *
17843746 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGACCG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG-AGGACCG
17843808 AGCCCATCCT
Statistics
Matches: 175, Mismatches: 34, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
156 1 0.01
157 3 0.02
158 56 0.32
159 111 0.63
160 3 0.02
161 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGAGGACCGGCAG
CACGCAGGAAGGACCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGACAGCTGAGCACCC
GCACACCCATTTCATGGGTTGACTTAG
Found at i:17843934 original size:26 final size:26
Alignment explanation
Indices: 17843884--17843936 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17843874 GTTAGCTTAG
* *
17843884 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17843910 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17843936 G
1 G
17843937 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17845671 original size:26 final size:26
Alignment explanation
Indices: 17845641--17845693 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17845631 GTTGGCTTAG
17845641 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
17845667 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
17845693 G
1 G
17845694 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:17845885 original size:26 final size:26
Alignment explanation
Indices: 17845849--17845901 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17845839 GTTAACTTAG
17845849 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17845875 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17845901 G
1 G
17845902 ATCCAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17846109 original size:550 final size:551
Alignment explanation
Indices: 17845047--17846245 Score: 1365
Period size: 550 Copynumber: 2.2 Consensus size: 551
17845037 CTACCTCTTC
* * *
17845047 GGCCTGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATACCATGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * *
17845112 CTAAGCATACGGAGTTCATTCCGAGTCTAAAAATGGACCAGACCTAGGGTTGTGATAGCAAGACC
66 CTAAGCATACGGAGTTCATTCCCAGTCT-AAGATAGACCAGACCTAGGATTGGGATAGCAAGACC
* * * *
17845177 AGCAGTAGGATCAGCAGCACACAGGGGGGACCAGGCTGATCCCCGGCTTGCACATTCTACCTCTT
130 AGCAGCAGGATCAGCAGAACACAGAGGGGACCAGGCTGATCCCCGACTTGCACATTCTACCTCTT
* * * ** ** * *
17845242 CGGTCGGCCTCTCCGACCGACTAAGCGCCCATATGCTCATTTCGTGGGTTGACTTTGGCATACGG
195 CGGTCGACCTCTCAGACCGACTAAGCGCCCACACACTCATTTCACGGGTTAACTTAGGCATACGG
* * ** *
17845307 AGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATAGGACCAGAATGAGGGTT
260 AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATACAACCAGAACGAGGGTT
* * * * * * **
17845372 GCGACAGTAGGATCAGTAGCACGCAGGGGGGACCGGATTGATCCCCAGCTTGCGCATTCTGCCTC
325 ACGACAGCAGGATCAGCAGCACCCAGAGGGGACCGAACCGATCCCCAGCTTGCGCATTCTGCCTC
* * * * * *
17845437 TCTGGCCGACTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCGA
390 TCTGGCCGACTAAGCGCCCGCAAGCCCATTTCATGGGTTGGCTGAGGCATAGGGAATTCATTCCA
* * * *** **
17845502 TGTCTAAGCCCCAATCGGATCGAGGGTTCTGGCAGTGGGACTGGCTGCACACAGAGGGGGACC-G
455 TGTCTAAGCCCCAACCAGATCGAGGGTTCTGGCAGCGGGACCAACAACACACAGAGGGGGACCGG
* * *
17845566 GCCGATCCTCAACTTGCGCATTTTGCCTCTCT
520 GCCGATCCCCAACTTGCGCATTCTGCATCTCT
* * *
17845598 GGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
17845663 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGA-CTGAGGATTGGGGTAGCAAGA
66 CTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCA-GACCT-AGGATTGGGATAGCAAGA
* ** * * * * *
17845726 CCAGCAGCAGGATCGGCAGAACGTA-AGGGGATC-GGGTCGATCCCTGACTTGCGCATTCTGCCT
128 CCAGCAGCAGGATCAGCAGAACACAGAGGGGACCAGGCT-GATCCCCGACTTGCACATTCTACCT
* * * * * * *
17845789 CTTCGGTCGACCTCTCAGGCTGACTGAGCTCCCGCACACTCCTTTTACGGGTTAACTTAGGCATA
192 CTTCGGTCGACCTCTCAGACCGACTAAGCGCCCACACACTCATTTCACGGGTTAACTTAGGCATA
* *** *
17845854 CGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCAATTGGACCGAGG
257 CGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATACAACCAGAACGAGG
** * * *
17845919 GTTACGGTAGCAGGATC-GACAGCACACCA-ATGGGACCGAACCGATCCTCAGCTTGTGCATTCT
322 GTTACGACAGCAGGATCAG-CAGCAC-CCAGAGGGGACCGAACCGATCCCCAGCTTGCGCATTCT
* * * *
17845982 GCCTCT-TCGGCCGGCTAAGTGCCCGCAAGCCCGTTTCGTGGGTTGGCTGAGGCATAGGGAATTC
385 GCCTCTCT-GGCCGACTAAGCGCCCGCAAGCCCATTTCATGGGTTGGCTGAGGCATAGGGAATTC
* * * **
17846046 ATTCCATGTCTAAGCCCCAGCCAGA-CTGAGGGTTGTGGTAGCGGGACCAACAACATGCAGAGGG
449 ATTCCATGTCTAAGCCCCAACCAGATC-GAGGGTTCTGGCAGCGGGACCAACAACACACAGAGGG
* *
17846110 GGACCGGGCCGATCCCCAGCTTGCGCATTCTGCATCTTT
513 GGACCGGGCCGATCCCCAACTTGCGCATTCTGCATCTCT
* * *
17846149 GGCCGGCTGAGCTCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-GATTG
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-TG
* *
17846213 TATAAGCATACGGAGTTCATTCCCAATCTAAGA
65 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
17846246 GTTTGAGCCA
Statistics
Matches: 537, Mismatches: 101, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
549 6 0.01
550 291 0.54
551 240 0.45
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (551 bp):
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGACCAGACCTAGGATTGGGATAGCAAGACCA
GCAGCAGGATCAGCAGAACACAGAGGGGACCAGGCTGATCCCCGACTTGCACATTCTACCTCTTC
GGTCGACCTCTCAGACCGACTAAGCGCCCACACACTCATTTCACGGGTTAACTTAGGCATACGGA
GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATACAACCAGAACGAGGGTTA
CGACAGCAGGATCAGCAGCACCCAGAGGGGACCGAACCGATCCCCAGCTTGCGCATTCTGCCTCT
CTGGCCGACTAAGCGCCCGCAAGCCCATTTCATGGGTTGGCTGAGGCATAGGGAATTCATTCCAT
GTCTAAGCCCCAACCAGATCGAGGGTTCTGGCAGCGGGACCAACAACACACAGAGGGGGACCGGG
CCGATCCCCAACTTGCGCATTCTGCATCTCT
Found at i:17847813 original size:874 final size:862
Alignment explanation
Indices: 17846134--17847838 Score: 2648
Period size: 874 Copynumber: 2.0 Consensus size: 862
17846124 CCCAGCTTGC
* *
17846134 GCATTCTGCATCTTTGGCCGGCTGAGCTCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
1 GCATTCTGCATCTCTGACCGGCTGAGCTCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* * * * *
17846199 GAGTTCATTGATTGTATAAGCATACGGAGTTCATTCCCAATCTAAGAGTTTGAGCCATGGTGCAC
66 GAGTTCATTCAATGTATAAGCATAAGGAGTTCATTCCCAATCTAAGAGTTAGAGCCACGGTGCAC
*
17846264 ATGATGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTGCCCGGGCACCATCGTCGGAGCATCG
131 ATGATGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTGCCCGGGCACCATCGCCGGAGCATCG
* * * *
17846329 TCGGAGAGCCTAACCGGCGGCATTAGGCGTTTCGACGATTGGGTGGGCTAGGGGGTGTGCGCACA
196 TCGGAGAGCCTAACCGACGGCATTAGGCGTTCCGACGATTGGGTGGGCGAGGGGGTGTACGCACA
*
17846394 TGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAG
261 CGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAG
*
17846459 AACTCGCACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
326 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
17846524 CTAAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTAAAT
391 CTAAAATAGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTAAAT
* *
17846589 ATTTTTGTGCATGGCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTC
456 ATTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACACTTTC
* *
17846654 TAAAAAATTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGGGT
521 TAAAAAATTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAGTCGTGAAAAATACAAAACGGGT
*
17846719 CGTCTTGCCACGAAAAATCACATGAAGGCGTAGGGGACCATTGTATGAATTTACAAGCCATAAAA
586 CGTCTTGCCACGAAAAATCACATGAAGGCGTAGGAGACCATTGTATGAATTTACAAGCCATAAAA
17846784 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCG
651 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCG
* * * * *
17846849 GCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGTCTGCACGCTCGTTTCACGGGTTGACATAGG
716 GCTTGCGCATCCTGCCCCTCTGGCCGACTAAGCGCCCGCACGCTCGTTTCACGGGTTGACATAGG
*
17846914 CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTTCGAGTCTAATATCAGACTGGACC
781 CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCGAGTCTAATATCAGACTGGACC
17846979 GAGGGTTGCAACAGTGT
846 GAGGGTTGCAACAGTGT
* *
17846996 GCATTCTGCCTCTCTGACCGGCTGAGCGT-CCGCACGCTCATTTTGTGGGTTGGCTTAGGCATAC
1 GCATTCTGCATCTCTGACCGGCTGAGC-TCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* *
17847060 GGAGTTCATTCAATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAGTTAGAGCCACGGTGCA
65 GGAGTTCATTCAATGTATAAGCATAAGGAGTTCATTCCCAATCTAAGAGTTAGAGCCACGGTGCA
* *
17847125 CATGCTGGGCTTGGGCATGTGCTGGTG-CTGCATTTTTTTTGCCCGGGGCACCATCGCCGGAGCA
130 CATGATGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTTTTGCCC-GGGCACCATCGCCGGAGCA
* *
17847189 TCGTTGAAGCATCGCCAGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTGGG-GGGCCGA
193 TC------G--TCG---GAGAGCCTAACCGACGGCATTAGGCGTTCCGACGATTGGGTGGG-CGA
* *
17847253 -GGGGTGTACGCACACGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
246 GGGGGTGTACGCACACGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
17847317 TCATCAAA-TCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
311 TCATCAAACT-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
17847381 GTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTC
375 GTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTC
* *
17847446 GAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACCAAAATACAAGGATCACCTCTACCAAATTTG
440 GAGTTTTTAGCTAAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTG
* * *
17847511 GGGACAAAACACTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA-TCGT
505 GGGACAAAACACTTTCT-AAAAAATTTAAAAAAATCCCGAACCATAAAAAG-TTTCAAAAGTCGT
** * *
17847575 GAAAAATACAAAACGGGTCGTCTTGCCACGAAACTTTACATGAAGGTGTAGGAGACCATTGTATG
568 GAAAAATACAAAACGGGTCGTCTTGCCACGAAAAATCACATGAAGGCGTAGGAGACCATTGTATG
* *
17847640 AATTTACAAGTCATAAAAATGGCATTGGCATGGCAGGAATATGAAGATGTGCTTGAACCCACCTA
633 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTA
* * *
17847705 CCACCCGTTCGATCCTCGGCTTGCGCATTCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGT
698 CCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTAAGCGCCCGCACGCTCGT
** * * * * * * *
17847770 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATATGGAGTTCATTCCTAGT
763 TTCACGGGTTGACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCGAGT
17847835 CTAA
828 CTAA
17847839 GAGTGAGCCA
Statistics
Matches: 763, Mismatches: 62, Indels: 24
0.90 0.07 0.03
Matches are distributed among these distances:
861 1 0.00
862 156 0.20
863 21 0.03
869 1 0.00
871 3 0.00
872 1 0.00
873 263 0.34
874 310 0.41
875 7 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (862 bp):
GCATTCTGCATCTCTGACCGGCTGAGCTCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCAATGTATAAGCATAAGGAGTTCATTCCCAATCTAAGAGTTAGAGCCACGGTGCAC
ATGATGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTGCCCGGGCACCATCGCCGGAGCATCG
TCGGAGAGCCTAACCGACGGCATTAGGCGTTCCGACGATTGGGTGGGCGAGGGGGTGTACGCACA
CGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTAAAATAGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTAAAT
ATTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACACTTTC
TAAAAAATTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAGTCGTGAAAAATACAAAACGGGT
CGTCTTGCCACGAAAAATCACATGAAGGCGTAGGAGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCG
GCTTGCGCATCCTGCCCCTCTGGCCGACTAAGCGCCCGCACGCTCGTTTCACGGGTTGACATAGG
CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCGAGTCTAATATCAGACTGGACC
GAGGGTTGCAACAGTGT
Found at i:17847823 original size:26 final size:26
Alignment explanation
Indices: 17847787--17847839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17847777 GTTGGCTTAG
17847787 GCATACGGAGTTCATTCCCT-GTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
*
17847813 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17847839 G
1 G
17847840 AGTGAGCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17848534 original size:26 final size:26
Alignment explanation
Indices: 17848504--17848556 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17848494 GTTGACTTAT
* *
17848504 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17848530 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17848556 G
1 G
17848557 ATAAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17849004 original size:158 final size:158
Alignment explanation
Indices: 17848594--17849033 Score: 404
Period size: 159 Copynumber: 2.8 Consensus size: 158
17848584 CAGCATCCGT
* ** * * * * *
17848594 AGCACGTAGGAGGGAACGGATCGATCCCCGACTTGCGCATTCGACCTTTCCGGCCGACTGAGCAC
1 AGCACGTAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGCAC
* * * * * *
17848659 CCAAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
66 CCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCACCAGCCA
* * * * *** *
17848724 GACTGAGGGTTGTGATAGTGGGACTAGC
131 GACTAAAGGTTGCGACAACAGGACTAAC
* * * * ** * **
17848752 AGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTACGCATTATGTCTCTCC-AGCCGGCACAGC
1 AGCACGTAG-GAGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGA-CCGACTGAGC
* * * * *
17848816 TCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCAAAG-ATCAG
64 ACCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCAAAGCACCAG
**
17848879 ACTGGA-TAAAAGGTTGCGACAACAGGA-TCAAC
128 -CCAGACT-AAAGGTTGCGACAACAGGACT-AAC
* *
17848911 AGCACGTAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTGTCCGACCGACTGAGCGC
1 AGCACGTAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGCAC
* * *
17848976 CCGAACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
66 CCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCA
17849034 TACGAAGTTC
Statistics
Matches: 218, Mismatches: 55, Indels: 17
0.75 0.19 0.06
Matches are distributed among these distances:
158 106 0.49
159 112 0.51
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
AGCACGTAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGCAC
CCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCACCAGCCA
GACTAAAGGTTGCGACAACAGGACTAAC
Found at i:17849042 original size:26 final size:26
Alignment explanation
Indices: 17849005--17849057 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17848995 GTTGGCTTAG
17849005 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
17849031 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCTAGTCTAA
17849057 G
1 G
17849058 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17849623 original size:356 final size:357
Alignment explanation
Indices: 17848968--17849645 Score: 975
Period size: 356 Copynumber: 1.9 Consensus size: 357
17848958 GTCCGACCGA
* * **
17848968 CTGAGCGCCCGAACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGAACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCACCCCATGTCTAAGC
* * *
17849033 ATACGAAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGCGTTGCGGCAGCAGGATCGGCAGC
66 ATACGAAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGCGTTGCGACAGCAGGATCGGCAGC
* * *
17849098 ACACAGGGGGGGATCAGGCCGATCCCCGGCTTGCGTATTCTACCTCTTCGGCCGACTGAGTGCCC
131 ACACAGGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGTGCCC
* ** *
17849163 GCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
196 ACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAAGCCCCAGTCAGA
* * * *
17849228 CTGAGGGTTTTAGTAGCGGGATCGGTAGCACGTAGAGGGGGACCGGGCTGATCCCCGGCTTGTGG
261 CTGAGGGTTATAGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGTGG
17849293 ATTATGCATTTCCGGTCGGCCTCTCCAGCGGG
326 ATTATGCATTTCCGGTCGGCCTCTCCAGCGGG
* * * * *
17849325 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACCCCCA-GTCTATG
1 CTGAGCGCCCGAACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA-CCCCATGTCTAAG
* * * *
17849389 CATACGGAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGGGTTGCTACAGCAGGATCGGTAG
65 CATACGAAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGCGTTGCGACAGCAGGATCGGCAG
* * * * * *
17849454 CACGCA-GGGGGGACCGGGCCGATCCCTC-GCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGC
130 CACACAGGGGGGGACCAGGCCGATCCC-CGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGTGC
*
17849517 CCACACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAGTCA
194 CCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAAGCCCCAGTCA
* * * *
17849582 GACTGAGGGTTATGGCAGCGGGATTGGCAGCATGCAGAGGGGGACCGGGCTGATCCTCGGCTTG
259 GACTGAGGGTTATAGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTG
17849646 CGCATTCTGC
Statistics
Matches: 281, Mismatches: 38, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
356 163 0.58
357 115 0.41
358 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (357 bp):
CTGAGCGCCCGAACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCACCCCATGTCTAAGC
ATACGAAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGCGTTGCGACAGCAGGATCGGCAGC
ACACAGGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGTGCCC
ACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAAGCCCCAGTCAGA
CTGAGGGTTATAGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGTGG
ATTATGCATTTCCGGTCGGCCTCTCCAGCGGG
Found at i:17849748 original size:26 final size:26
Alignment explanation
Indices: 17849705--17849757 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17849695 GTTGGCTTAG
17849705 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTTATTCCCA-GTCTAA
17849731 GCATACGGAGTTCT-TTCCCAGTCTAA
1 GCATACGGAGTT-TATTCCCAGTCTAA
17849757 G
1 G
17849758 AGTTTCAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCCAGTCTAA
Found at i:17850465 original size:26 final size:26
Alignment explanation
Indices: 17850429--17850481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17850419 GTTGACTTAG
17850429 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17850455 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17850481 G
1 G
17850482 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17850625 original size:26 final size:26
Alignment explanation
Indices: 17850588--17850640 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17850578 GTTGCCTTAG
*
17850588 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGCAGTTCATTCCCA-GTCTAA
17850614 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
17850640 G
1 G
17850641 ATCGAATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:17850831 original size:26 final size:26
Alignment explanation
Indices: 17850795--17850847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17850785 GTTGACTTAG
17850795 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
17850821 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17850847 G
1 G
17850848 ATCTAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17851174 original size:26 final size:26
Alignment explanation
Indices: 17851138--17851190 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17851128 GTTGGCTTAG
17851138 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17851164 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17851190 G
1 G
17851191 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17852080 original size:158 final size:158
Alignment explanation
Indices: 17851822--17852215 Score: 407
Period size: 159 Copynumber: 2.5 Consensus size: 158
17851812 GACTGAGTGT
* * * * *
17851822 CCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
1 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAGTCTAAGACCAGACCA
** * * * * *
17851887 GATTGAGGGTTGCGGTAGTAGGATTAGCAGGACGCAG-GGGGGATCGGGTCGATCCCTGACTTAT
65 GACCGAGGGTTGCGGTAGCAGGACTAGCAGCACGCAGAGGGGGATCGGGCCGATCCCTGACTTAC
* ** *
17851951 GCATTCTGCCTATCCGGTCGGCTGAGCGC
130 GCATTATGCCTATCCAATCGGCTCAGCGC
* * *
17851980 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAG-CC
1 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTAAG-ACCAGACC
* * *
17852044 AGACCGAGGGTTGTGGTAGCGGGACCTA-CAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTT
64 AGACCGAGGGTTGCGGTAGCAGGA-CTAGCAGCACGCAGAGGGGGATCGGGCCGATCCCTGACTT
* * * * *
17852108 GCGCATTATGCCTCTCTAATTGGCTCAGTGC
128 ACGCATTATGCCTATCCAATCGGCTCAGCGC
* * * * * * **
17852139 CTGCACGCTCATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCCAGTGTAAGATTAGACCA
1 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAGTCTAAGACCAGACCA
17852204 GACCGAGGGTTG
65 GACCGAGGGTTG
17852216 TGACAGTAGG
Statistics
Matches: 192, Mismatches: 38, Indels: 11
0.80 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 78 0.41
159 108 0.56
160 3 0.02
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.25
Consensus pattern (158 bp):
CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGTCTAAGACCAGACCAG
ACCGAGGGTTGCGGTAGCAGGACTAGCAGCACGCAGAGGGGGATCGGGCCGATCCCTGACTTACG
CATTATGCCTATCCAATCGGCTCAGCGC
Found at i:17852174 original size:159 final size:159
Alignment explanation
Indices: 17851991--17852352 Score: 383
Period size: 159 Copynumber: 2.3 Consensus size: 159
17851981 CGCATGCCCG
* * *
17851991 TTTCGTGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGT
** * * * * *
17852055 TGTGGTAGCGGGACCTACAGCACGCAGAGGG-GGA-TCGGGCCGATCCCTGGCTTGCGCATTATG
65 TGTGACAGCAGGACCAACAGCACGCAG-GGGTAGACT-GGGCCGATCCCCGGCTTGCGCATTATA
* *
17852118 CCTC-TCTAATTGGCTCAGTGCCTGCACGCTCA
128 CCTCTTC-AACTGGCTCAGTGCCCGCACGCTCA
* * **
17852150 TTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCCA-GTGTAAGATTAGACCAGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGT
* * ** * * *
17852214 TGTGACAGTAGGATCAATTGCACGTAGGGGTAGACTGGGCCGATCCCCGGCTTGCGCTTTCTACC
65 TGTGACAGCAGGACCAACAGCACGCAGGGGTAGACTGGGCCGATCCCCGGCTTGCGCATTATACC
** * **
17852279 TCTTCGGCTGGCTGAGTGCCCGCACGCTTG
130 TCTTCAACTGGCTCAGTGCCCGCACGCTCA
*
17852309 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
17852353 TCATACGGAG
Statistics
Matches: 166, Mismatches: 31, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
158 8 0.05
159 152 0.92
160 6 0.04
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.27
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTT
GTGACAGCAGGACCAACAGCACGCAGGGGTAGACTGGGCCGATCCCCGGCTTGCGCATTATACCT
CTTCAACTGGCTCAGTGCCCGCACGCTCA
Found at i:17853421 original size:26 final size:26
Alignment explanation
Indices: 17853391--17853441 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17853381 TTGACTTAGG
17853391 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
17853417 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
17853442 GAGTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:17854482 original size:159 final size:159
Alignment explanation
Indices: 17854302--17854980 Score: 456
Period size: 158 Copynumber: 4.3 Consensus size: 159
17854292 CGCATGCCCA
* * *
17854302 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGT
1 TTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACCAGACCGAGGGT
* * * * *
17854366 TATGGTAGCGGGACCGACAGCACACAGAGCGGGATCGGGACGATCCCCGGCTTGCGCATTATGCC
66 TACGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGG-CGATCCCCGGCTTGCGCATTATGCC
* *
17854431 TCTCCGGTCGGCTTAGCACCCGAACACTCG
130 TCTCCGGTCGACTGAGCACCCGAACACTCG
** ** *
17854461 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTCA-GTCTAAG--ATAGGACCGGACCGAGG
1 TTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTC-CATGTCTAAGCCCCA-GACCAGACCGAGG
* * * * * * * *
17854523 GTTGCGGCAGCAGGATCGATAGCACGCAG-TGGGGATCGAGCCGATCCTCAGCTTGCGCATTTTG
64 GTTACGGCAGCAGGACCGACAGCACGCAGAGGGGGATCG-GGCGATCCCCGGCTTGCGCATTATG
* ** * * * *
17854587 CCTCTCTGGTCGACTGAGCGTCCGCACGCGCC
128 CCTCTCCGGTCGACTGAGCACCCGAACACTCG
* * * *
17854619 TTTCGTGGG-TGGCTTAGGCATAGGGAGTTCATTCTATGTCTAACCCCCAGTA--GGACCGAGGG
1 TTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-ACCAGACCGAGGG
** *** * **
17854681 TTGTGGCAATGGGACC-AGCAGCACGCAGAGGGGGA-CTAGGCTGATCCTTGGCTTGCGCATTAT
65 TTACGGCAGCAGGACCGA-CAGCACGCAGAGGGGGATC-GGGC-GATCCCCGGCTTGCGCATTAT
* ** * * * * *
17854744 ACCTCTTTGG-CAGGCTCAACACCTGCACACTCG
127 GCCTCTCCGGTC-GACTGAGCACCCGAACACTCG
* ** ** * *
17854777 TTTCGTGGGTTGACTTATGCAT-GCATAGTTCATTCC-TAGTCTAAG-ATCAGACCGGACCAAGG
1 TTTCGTGGGTTGACTTAGGCATAG-GGAGTTCATTCCAT-GTCTAAGCCCCAGACCAGACCGAGG
** * * * * * *
17854839 GTTACGATAGCAGGATCGACAGCACGTAG-GGGGGATCGGGTCAATCCCCGACTTGTGCATTCTG
64 GTTACGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGG-CGATCCCCGGCTTGCGCATTATG
* * * * *
17854903 CCACTCCGGCCGACTGAGCGCCC-ACACGCTTG
128 CCTCTCCGGTCGACTGAGCACCCGA-ACACTCG
* * *
17854935 TTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCCA-GTCTAAGC
1 TTTCGTGGGTTGACTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
17854981 ATACAAAGTT
Statistics
Matches: 390, Mismatches: 103, Indels: 54
0.71 0.19 0.10
Matches are distributed among these distances:
156 2 0.01
157 64 0.16
158 193 0.49
159 128 0.33
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACCAGACCGAGGGT
TACGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCGATCCCCGGCTTGCGCATTATGCCT
CTCCGGTCGACTGAGCACCCGAACACTCG
Found at i:17854706 original size:157 final size:156
Alignment explanation
Indices: 17854261--17854713 Score: 441
Period size: 159 Copynumber: 2.9 Consensus size: 156
17854251 CCTTGACTTA
* * * *
17854261 CGCATTCTGCCTCT-TCGGCCGGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATA
1 CGCATTATGCCTCTCT-GGTCGGCTGAGCGCCCGCACGCCC-TTTCGTGGGTTGGCTTAGGCATA
* * *
17854325 GGGAGTTCATTCCATGTCTAAGCCCCAGTCA-GACCGAGGGTTATGGTAGCGGGACCGACAGCAC
64 GGGAGTTCATTCTATGTCTAA-CCCCAGT-AGGACCGAGGGTTGTGGCAGCGGGACCGACAGCAC
* * *
17854389 ACAGAGCGGGATCGGGACGATCCCCGGCTTG
127 GCAGAG-GGGATCGAGACGATCCCCAGCTTG
* * * * * * * *
17854420 CGCATTATGCCTCTCCGGTCGGCTTAGCACCCGAACACTCGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGC-CCTTTCGTGGGTTGGCTTAGGCATAG
* *** * * * * *
17854485 AGAGTTCATTCTCA-GTCTAA-GATAGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCAC
65 GGAGTTCATTCT-ATGTCTAACCCCAGTA--GGACCGAGGGTTGTGGCAGCGGGACCGACAGCAC
* * *
17854548 GCAGTGGGGATCGAGCCGATCCTCAGCTTG
127 GCAGAGGGGATCGAGACGATCCCCAGCTTG
* * *
17854578 CGCATTTTGCCTCTCTGGTCGACTGAGCGTCCGCACGCGCCTTTCGTGGG-TGGCTTAGGCATAG
1 CGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGC-CCTTTCGTGGGTTGGCTTAGGCATAG
**
17854642 GGAGTTCATTCTATGTCTAACCCCCAGTAGGACCGAGGGTTGTGGCAATGGGACC-AGCAGCACG
65 GGAGTTCATTCTATGTCTAA-CCCCAGTAGGACCGAGGGTTGTGGCAGCGGGACCGA-CAGCACG
17854706 CAGAGGGG
128 CAGAGGGG
17854714 GACTAGGCTG
Statistics
Matches: 230, Mismatches: 54, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 65 0.28
158 60 0.26
159 100 0.43
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
CGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGCCCTTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCTATGTCTAACCCCAGTAGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAG
AGGGGATCGAGACGATCCCCAGCTTG
Found at i:17854715 original size:158 final size:157
Alignment explanation
Indices: 17854197--17854749 Score: 460
Period size: 158 Copynumber: 3.5 Consensus size: 157
17854187 AGATCGGACC
* * ** * * * * * *
17854197 GGACCGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAG-GGGGGA-CTGGGCCGATCCTTGACTT
1 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATC-GAGCCGATCCTCGGCTT
* * * * *
17854260 ACGCATTCTGCCTCT-TCGGCCGGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCAT
65 GCGCATTATGCCTCTCT-GGTCGGCTGAGCGCCCGCACGCCC-TTTCGTGGGTTGGCTTAGGCAT
*
17854324 AGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
128 AGGGAGTTCATTCTATGTCTAA-CCCCAGT-A
* * * * * * *
17854356 -GACCGAGGGTTATGGTAGCGGGACCGACAGCACACAGAGCGGGATCGGGACGATCCCCGGCTTG
1 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCTCGGCTTG
* * * * * * * *
17854420 CGCATTATGCCTCTCCGGTCGGCTTAGCACCCGAACACTCGTTTCGTGGGTTGACTTAGGCATAC
66 CGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGC-CCTTTCGTGGGTTGGCTTAGGCATAG
* *** *
17854485 AGAGTTCATTCTCA-GTCTAA-GATAGGA
130 GGAGTTCATTCT-ATGTCTAACCCCAGTA
* * * * * *
17854512 CCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAG-TGGGGATCGAGCCGATCCTCAGCT
1 --GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCTCGGCT
* * *
17854576 TGCGCATTTTGCCTCTCTGGTCGACTGAGCGTCCGCACGCGCCTTTCGTGGG-TGGCTTAGGCAT
64 TGCGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGC-CCTTTCGTGGGTTGGCTTAGGCAT
17854640 AGGGAGTTCATTCTATGTCTAACCCCCAGTA
128 AGGGAGTTCATTCTATGTCTAA-CCCCAGTA
** * * *
17854671 GGACCGAGGGTTGTGGCAATGGGACC-AGCAGCACGCAGAGGGGGA-CTAGGCTGATCCTTGGCT
1 GGACCGAGGGTTGTGGCAGCGGGACCGA-CAGCACGCAGAGGGGGATCGA-GCCGATCCTCGGCT
*
17854734 TGCGCATTATACCTCT
64 TGCGCATTATGCCTCT
17854750 TTGGCAGGCT
Statistics
Matches: 305, Mismatches: 75, Indels: 29
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 63 0.21
158 119 0.39
159 117 0.38
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (157 bp):
GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCTCGGCTTG
CGCATTATGCCTCTCTGGTCGGCTGAGCGCCCGCACGCCCTTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCTATGTCTAACCCCAGTA
Found at i:17854743 original size:316 final size:317
Alignment explanation
Indices: 17854169--17854967 Score: 906
Period size: 316 Copynumber: 2.5 Consensus size: 317
17854159 TAAGCATATG
* * * *
17854169 GAGTTCATTGCT-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCATGC
1 GAGTTCATT-CTCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGC
* * *
17854233 AGGGGGGA-CTGGGCCGATCCT-TGACTTACGCATTCTGCCTCT-TCGGCCGGCTGAGCGCCCGC
65 AGGGGGGATC-GGGCCGATCCTCAGACTTGCGCATTCTGCCTCTCT-GGCCGACTGAGCGCCCGC
* * *
17854295 ATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
128 ACGCCC-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGTCAGACC
* * *
17854360 GAGGGTTATGGTAGCGGGACCGACAGCACACAGAGCGGGATCGGGACGATCCCCGGCTTGCGCAT
192 GAGGGTTATGGCAACGGGACCGACAGCACACAGAGCGGGATCAGGACGATCCCCGGCTTGCGCAT
* * *
17854425 TATGCCTCTCCGGTC-GGCTTAGCACCCGAACACTCGTTTCGTGGGTTGACTTAGGCATACA
257 TATACCTCTCCGG-CAGGCTCAACACCCGAACACTCGTTTCGTGGGTTGACTTAGGCATACA
* *
17854486 GAGTTCATTCTCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
1 GAGTTCATTCTCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA
* * * * *
17854551 GTGGGGATCGAGCCGATCCTCAG-CTTGCGCATTTTGCCTCTCTGGTCGACTGAGCGTCCGCACG
66 GGGGGGATCGGGCCGATCCTCAGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACG
*
17854615 CGCCTTTCGTGGG-TGGCTTAGGCATAGGGAGTTCATTCTATGTCTAACCCCCAGT-AGGACCGA
131 C-CCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGTCA-GACCGA
* * * * **
17854678 GGGTTGTGGCAATGGGACC-AGCAGCACGCAGAGGGGGA-CTAGG-CTGATCCTTGGCTTGCGCA
194 GGGTTATGGCAACGGGACCGA-CAGCACACAGAGCGGGATC-AGGAC-GATCCCCGGCTTGCGCA
** * * * *
17854740 TTATACCTCTTTGGCAGGCTCAACACCTGCACACTCGTTTCGTGGGTTGACTTATGCATGCA
256 TTATACCTCTCCGGCAGGCTCAACACCCGAACACTCGTTTCGTGGGTTGACTTAGGCATACA
* * * *
17854802 TAGTTCATTC-CTAGTCTAAGATCA-GACCGGACCAAGGGTTACGATAGCAGGATCGACAGCACG
1 GAGTTCATTCTC-AGTCTAAGAT-AGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACG
* * * * * * * *
17854865 TAGGGGGGATCGGGTCAATCC-CCGACTTGTGCATTCTGCCACTCCGGCCGACTGAGCGCCCACA
64 CAGGGGGGATCGGGCCGATCCTCAGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCA
** * * *
17854929 CGCTTGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCAT
129 CGC-CCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
17854968 CCCCAGTCTA
Statistics
Matches: 407, Mismatches: 61, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
315 8 0.02
316 259 0.64
317 135 0.33
318 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
GAGTTCATTCTCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA
GGGGGGATCGGGCCGATCCTCAGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACG
CCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGTCAGACCGAGG
GTTATGGCAACGGGACCGACAGCACACAGAGCGGGATCAGGACGATCCCCGGCTTGCGCATTATA
CCTCTCCGGCAGGCTCAACACCCGAACACTCGTTTCGTGGGTTGACTTAGGCATACA
Found at i:17855441 original size:501 final size:498
Alignment explanation
Indices: 17854479--17856009 Score: 1600
Period size: 501 Copynumber: 3.1 Consensus size: 498
17854469 GTTGACTTAG
* * * * * *
17854479 GCATACAGAGTTCATTCTCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGAACCGGACTGAGGGTTGC-GAAGCAGGATCGACA
* * * * * * *
17854544 GCACGCAGTGGGGATCGAGCCGATCCTCAGCTTGCGCATTTTGCCTCTCTGGTCGACTGAGCGTC
65 GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTTTGACTCTCTGGCCGACTGAGCGCC
* * **
17854609 CGCACGCGCCTTTCGTGGG-TGGCTTAGGCATAGGGAGTTCATT-CTATGTCTAACCCCCAGTAG
130 CGCACGCG--TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCT-TGTCTAAGCCCCAGCCG
* * * * * *
17854672 GACCGAGGGTTGTGGCAATGGGACC-AGCAGCACGCAGAGGGGGACTAGGCTGATCCTTGGCTTG
192 GACCAAGGGTTGTGGCAATGGGACCGA-CAGCACGCAGAGAGGGACTGGGCTGATCCCTAGCTTA
* * * *** * * *
17854736 CGCATTATACCTCTT-TGGCAGGCTCAACACCTGCACACTCGTTTCGTGGGTTGACTTATGCATG
256 CGCATTATGCCTCTTCAGTC-GGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATA
* * * * *
17854800 CATAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTAC-GATAGCAGGATCGACAGCAC
320 CAAAGTTCATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTGCAG-CAGCAGGATCGACAGCAC
* * * * *
17854864 GTAGGGGGGATCGGGTCAATCCCCGACTTGTGCATTCTGCCACTCCGGCCGACTGAGCGCCCACA
384 GCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
*
17854929 CGCTTGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCCAGTCTAA
449 CGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCCAGTCTAA
* * * * *
17854979 GCATACAAAGTTCATTCCCAGTTTAAGATTGAACCAGACTGAGGGTTGCGATAGCAGGATTGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGAACCGGACTGAGGGTTGCGA-AGCAGGATCGACA
* * * * * * **
17855044 GCATGTAGGGGGGACCAAGTCGATCCCCGGCTTGCACATTTTGTCTCTCTGGCCGGTTGAGCGCC
65 GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTTTGACTCTCTGGCCGACTGAGCGCC
*
17855109 CGCACGTCTGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCGG
130 CGCACG-C-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCGG
* * * *
17855174 ACCAAGGGTTGTGGCATTGGGACCGACAGCACGTAGAGAGGGACCGGGTTGATCCCTAGCTTACG
193 ACCAAGGGTTGTGGCAATGGGACCGACAGCACGCAGAGAGGGACTGGGCTGATCCCTAGCTTACG
* * * * * *
17855239 TATTGTGCCTCTTCAATCGGCTCAGTGCCCGCACGTTCATTTTGTGGGTTGACTTATGCATACAA
258 CATTATGCCTCTTCAGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAA
* * * *
17855304 AGTTCATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTGCAGCAGGAAGATCGATAGCATGCAG
323 AGTTCATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAG
* ** * * *
17855369 GGGGGATCGGGTCGATCCCCAACTTACGCATTCTACCTCTCCGGCTGGCTGAGTGCCCGCACGCT
388 GGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCT
* *
17855434 CGTTTCGTGGGTTGACTTAGGCGTACGAAGTTCATCCCTAGTCTAA
453 CGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCCAGTCTAA
* * * *
17855480 GCATACGGAGTTGATTCCCAGTCTAAGA-TCAGACCGGA-TCAAGGGTT--GAAGCAGTAGAATC
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGA-ACCGGACT-GAGGGTTGCGAAGCAG--G-ATC
* * * * * *
17855541 GACAACACGTAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCT-ACATCTCCGACCGACTGA
61 GACAGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTTTGAC-TCTCTGGCCGACTGA
* * * * * * * * **
17855605 GAGCCCGCATGCCCGTTCCATGGTTTGGCTTACGCATAGGGAGTACATTCCATGTCTAAGCTCTG
125 GCGCCCGCA--CGCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCA
* * * * *
17855670 GCCGGACCAAGGGTTGTGGCAACGGGATCGTCAGCACGCAGAGAGGGACTGGGCCGATCCCCAGC
188 GCCGGACCAAGGGTTGTGGCAATGGGACCGACAGCACGCAGAGAGGGACTGGGCTGATCCCTAGC
** * *
17855735 TTTTGCATTATGCTTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCA
253 TTACGCATTATGCCTCTTCAGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCA
** * * * *
17855800 TACGGAGTTCATTCCCAGTCTAAGATTGGA-TCAGACCGAA-GGTTGCAGCATCAGGATCGACAG
318 TACAAAGTTCATTCCTAGTCTAAGATCGGACT-GGACC-AAGGGTTGCAGCAGCAGGATCGACAG
* * * * * * * *
17855863 CACGCAGGGGGG-TCAGGCCGATCCCTGGCTTGTACATTCTGCCTCTCTGACCGGCTGAGCACCC
381 CACGCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
* * * *
17855927 GCACGCTCATTTCGTAGGTT-AGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
446 GCACGCTCGTTTCGTGGGTTGA-CTTAGGCGTACGGAGTTCATCCCCA-GTCTAA
*
17855980 GCATACGGAGTTCATTCCCTA-TCTAAGATT
1 GCATACAGAGTTCATTCCC-AGTCTAAGATT
17856010 TTGAGCCACG
Statistics
Matches: 847, Mismatches: 162, Indels: 43
0.81 0.15 0.04
Matches are distributed among these distances:
498 5 0.01
499 6 0.01
500 228 0.27
501 598 0.71
502 9 0.01
503 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (498 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTGAACCGGACTGAGGGTTGCGAAGCAGGATCGACAG
CACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTTTGACTCTCTGGCCGACTGAGCGCCC
GCACGCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCGGACC
AAGGGTTGTGGCAATGGGACCGACAGCACGCAGAGAGGGACTGGGCTGATCCCTAGCTTACGCAT
TATGCCTCTTCAGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAAAGT
TCATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGG
GGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCCAGTCTAA
Done.