Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 157 of 402
Found at i:17855664 original size:184 final size:184
Alignment explanation
Indices: 17855304--17855665 Score: 413
Period size: 184 Copynumber: 2.0 Consensus size: 184
17855294 ATGCATACAA
* * * * * * *
17855304 AGTTCATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTGCAGCAGGAAGATCGATAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGAAGCAGGAAGATCGACAACACGCAG
* * * * * * *
17855369 GGGGGATCGGGTCGATCCCCAACTTACGCATTCTACCTCTCCGGCTGGCTGAGTGCCCGCACGCT
66 GGGGGATCGGGCCGATCCCCAACTTACGCATTCTACATCTCCGACCGACTGAGAGCCCGCACGCC
* * * * * *
17855434 CGTTTCGTGGGTTGACTTAGGCGTACGAAGTTCATCCCTAGTCTAAGCATACGG
131 CGTTCCATGGGTTGACTTACGCATACGAAGTACATCCATAGTCTAAGCATACGG
* * * *
17855488 AGTTGATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGAAGCA-GTAGAATCGACAACACGTA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGAAGCAGGAAG-ATCGACAACACGCA
* * *
17855552 GGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACATCTCCGACCGACTGAGAGCCCGCATGC
65 GGGGGGATCGGGCCGATCCCCAACTTACGCATTCTACATCTCCGACCGACTGAGAGCCCGCACGC
* * * *
17855617 CCGTTCCATGGTTTGGCTTACGCATAGGGAGTACATTCCAT-GTCTAAGC
130 CCGTTCCATGGGTTGACTTACGCATACGAAGTACA-TCCATAGTCTAAGC
17855666 TCTGGCCGGA
Statistics
Matches: 145, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
183 3 0.02
184 138 0.95
185 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGAAGCAGGAAGATCGACAACACGCAG
GGGGGATCGGGCCGATCCCCAACTTACGCATTCTACATCTCCGACCGACTGAGAGCCCGCACGCC
CGTTCCATGGGTTGACTTACGCATACGAAGTACATCCATAGTCTAAGCATACGG
Found at i:17855990 original size:26 final size:26
Alignment explanation
Indices: 17855954--17856006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17855944 GTTAGCTTAG
*
17855954 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17855980 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17856006 G
1 G
17856007 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17857540 original size:24 final size:24
Alignment explanation
Indices: 17857499--17857546 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
17857489 TGCGCATGTC
*
17857499 CCTCCTTGATGCACGGCACTAGTG
1 CCTCCTTGATGCACGGCACCAGTG
* **
17857523 CCTCTTTGATGCGTGGCACCAGTG
1 CCTCCTTGATGCACGGCACCAGTG
17857547 ACCCCTCTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.31, G:0.27, T:0.27
Consensus pattern (24 bp):
CCTCCTTGATGCACGGCACCAGTG
Found at i:17861878 original size:25 final size:26
Alignment explanation
Indices: 17861839--17861890 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17861829 GTTGACTTAG
*
17861839 GCATACAAAGTTCATCCCCAATTTAA
1 GCATACAAAGTTCATCCCCAATCTAA
*
17861865 GCATAC-AAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
17861890 G
1 G
17861891 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:17862227 original size:158 final size:158
Alignment explanation
Indices: 17861865--17862228 Score: 353
Period size: 158 Copynumber: 2.3 Consensus size: 158
17861855 CCCAATTTAA
* *
17861865 GCATACA-AGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGACA
* * * * *
17861929 GTACGCAGGGGGGACCGGGCCAATCCTCGGCTTACGCATTCTGCCTTTCCAGTCGGTTAAGCGAT
66 GCACGCAGGGGGGACCGGGCCAATCCTCGGCTTACACATTATGCCTCTCCAGTCGGTCAAGCGAT
* * *
17861994 CGCACACCCGTTTCGTGGGTTGTCTTAG
131 CGCACACCCATTTCATGGGTTGACTTAG
** ** ** * * * * * * * **
17862022 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGTC-GGATCAAAGGTTGTGGCAGCGGGA-CGGT
1 GCATACAGAGTTCATTCCCAGTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGAC
* * *
17862085 AGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCACGTTATGCCTCTCCAG-CAGGCTCAA-
65 AGCACGCAG-GGGGGACCGGGCCAATCCTCGGCTTACACATTATGCCTCTCCAGTC-GG-TCAAG
* * *
17862148 CG-CCTGCACGCTCATTTCATGGGTTGACTTAG
127 CGATC-GCACACCCATTTCATGGGTTGACTTAG
*
17862180 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC
17862229 ATAAGTAGGA
Statistics
Matches: 158, Mismatches: 42, Indels: 13
0.74 0.20 0.06
Matches are distributed among these distances:
157 20 0.13
158 131 0.83
159 7 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGACA
GCACGCAGGGGGGACCGGGCCAATCCTCGGCTTACACATTATGCCTCTCCAGTCGGTCAAGCGAT
CGCACACCCATTTCATGGGTTGACTTAG
Found at i:17862409 original size:26 final size:27
Alignment explanation
Indices: 17862340--17862410 Score: 110
Period size: 26 Copynumber: 2.7 Consensus size: 27
17862330 TTGGCTTAGC
* *
17862340 CATACGGAGTCCATT-CCATGTCTAAG
1 CATATGGAGTTCATTCCCATGTCTAAG
17862366 CATATGGAGTTCATTCCCA-GTCTAAG
1 CATATGGAGTTCATTCCCATGTCTAAG
17862392 CATATGGAGTTCATTCCCA
1 CATATGGAGTTCATTCCCA
17862411 ATGTAAGATC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 39 0.93
27 3 0.07
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (27 bp):
CATATGGAGTTCATTCCCATGTCTAAG
Found at i:17862417 original size:26 final size:26
Alignment explanation
Indices: 17862360--17862417 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
17862350 CCATTCCATG
*
17862360 TCTAAGCATATGGAGTTCATTCCCAG
1 TCTAAGCATATGGAGTTCATTCCCAA
17862386 TCTAAGCATATGGAGTTCATTCCCAA
1 TCTAAGCATATGGAGTTCATTCCCAA
*
17862412 TGTAAG
1 TCTAAG
17862418 ATCAGACCGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
TCTAAGCATATGGAGTTCATTCCCAA
Found at i:17862456 original size:33 final size:33
Alignment explanation
Indices: 17862414--17862478 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
17862404 ATTCCCAATG
*
17862414 TAAGATCAGACCGGACTGAAGGTTGCGACAGTC
1 TAAGATCAGACCAGACTGAAGGTTGCGACAGTC
*
17862447 TAAGATCAGACCAGACTGAGGGTTGCGACAGT
1 TAAGATCAGACCAGACTGAAGGTTGCGACAGT
17862479 AGAACCAGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.31, C:0.20, G:0.31, T:0.18
Consensus pattern (33 bp):
TAAGATCAGACCAGACTGAAGGTTGCGACAGTC
Found at i:17863127 original size:156 final size:159
Alignment explanation
Indices: 17862805--17863463 Score: 649
Period size: 156 Copynumber: 4.2 Consensus size: 159
17862795 CCCGATCTAA
* * * *
17862805 GCATAAGGAGTTCATTCC-TAGTCTAAG-ATCAGATCAGACCGAGGGTTGTGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGTTGTGACAGCAGGATCGA
* ** * *
17862868 CAGCATGCAGGGGGGACCGGGCCGATTCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGGG
65 CAGCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGATGAGCG
17862933 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * ** * *
17862963 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGACAGCAGGATCGAC
* * * * * * *
17863027 AACACGCAGGGGGG-CCGGGCCGATCCCCG-GTTGTGCATTCTGCCTCTTCGGCCGGATGAGCGC
66 AGCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGATGAGCGC
*
17863090 CCACACGCCCGTTTCATGGGTTGGCTTAG
131 CCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * * * * *
17863119 GCATAGGGAGTTTATTCCATGTGTAAGCTCCAG-CCGGATC-ATGGGTTGTGGCAGCGGGA-CGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGA-GGGTTGTGACAGCAGGATCGA
* * * * * * * *
17863181 GCAGCATGTAGAGGGGGACTGGGCCGATCCTCGGCTTGCGTATTATGCCTCTCCGACCAGCTCAG
65 -CAGCATGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGATGAG
* * * * *
17863246 TGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
128 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * * * * **
17863278 CCATACCGAGTTCATTCCCA-GTGTAAG-ATCAGACCGGACAGGGGGTTGCAACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGACAGCAGGATCGA
* * * *
17863341 CAGCATGCA-GGGGGACCGGGTCAATCCCCGACTTGCGCATTCTACCTCCCCGACC-GACTGAGC
65 CAGCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGA-TGAGC
* * *
17863404 GCCCGTATGCTCGTTTCATGGGTTGGCTTAG
129 GCCCGCACGCCCGTTTCATGGGTTGGCTTAG
17863435 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
17863464 TACGGAGTTC
Statistics
Matches: 409, Mismatches: 78, Indels: 28
0.79 0.15 0.05
Matches are distributed among these distances:
155 3 0.01
156 117 0.29
157 107 0.26
158 79 0.19
159 97 0.24
160 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGACAGCAGGATCGAC
AGCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGATGAGCGC
CCGCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:17863465 original size:26 final size:26
Alignment explanation
Indices: 17863435--17863487 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17863425 GTTGGCTTAG
17863435 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17863461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17863487 G
1 G
17863488 ATCATGTCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17864734 original size:26 final size:26
Alignment explanation
Indices: 17864698--17864750 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17864688 GTTGGCTTAG
17864698 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
17864724 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
17864750 G
1 G
17864751 ATTTTGAGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:17865442 original size:26 final size:26
Alignment explanation
Indices: 17865408--17865459 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17865398 TTGACTTAGA
*
17865408 CATATGAAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
*
17865434 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
17865460 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAG
Found at i:17865906 original size:157 final size:157
Alignment explanation
Indices: 17865433--17865933 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 157
17865423 CCCAGTCTAA
*** * *
17865433 GCATACGAAGTTCATTCCCA-GTCTAAGATTGGACCGGATCGAGGGTTGTGGTAGCAAGATCGAT
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAAATCGGATCGAGGGTTGTGGTAGCAGGATCGAT
** * * *
17865497 AGCACACAAGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCTGATCGGCTGAGCAT
65 AGCAC-GTAGGGGGACCAGGTTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCAC
*
17865562 CCGCACACCCGTTTCGTGGGTTGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * *** *** * *
17865591 GCATAGGGAGTGCATTCCATGTCTAAGCCCTAGTCAGA-CTGAGGGTTGTCACAATGGGACCGGT
1 GCATACGAAGTTCATTCCATGTCTAAGATCAAATCGGATC-GAGGGTTGTGGTAGCAGGATCGAT
* ** * * ** * *
17865655 AGCACGTAGAGGGGAACCAGGCTGATCTTCGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCC
65 AGCACGTAG-GGGG-ACCAGGTTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCA
* * * *
17865720 CCCGCACGCTCATTTCATGGGTTGACTTAG
128 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
17865750 GCATAC-AGAGTTCATTCCCA-GTCTAAGATCAAATCGGATCGAGGGTTGTGGTAGCAGGATCGA
1 GCATACGA-AGTTCATT-CCATGTCTAAGATCAAATCGGATCGAGGGTTGTGGTAGCAGGATCGA
* * * * * *
17865813 CAGTACGTAGGGGGACCAGGTTGATCCCC-AGCTTATGTATTCTGCCTCTCCGATCGGTTGAGCG
64 TAGCACGTAGGGGGACCAGGTTGATCCCCGA-CTTACGCATTCTGCCTCTCCGATCGGCTGAGCA
17865877 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
17865907 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
17865934 CATACGGAGT
Statistics
Matches: 260, Mismatches: 73, Indels: 21
0.73 0.21 0.06
Matches are distributed among these distances:
156 4 0.02
157 89 0.34
158 52 0.20
159 111 0.43
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAAATCGGATCGAGGGTTGTGGTAGCAGGATCGATA
GCACGTAGGGGGACCAGGTTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCC
GCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:17865944 original size:26 final size:26
Alignment explanation
Indices: 17865907--17865959 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17865897 GTTGGCTTAG
17865907 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
17865933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17865959 G
1 G
17865960 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17866304 original size:26 final size:26
Alignment explanation
Indices: 17866274--17866326 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17866264 GTTGACTTAG
17866274 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
17866300 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17866326 G
1 G
17866327 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17874271 original size:159 final size:158
Alignment explanation
Indices: 17873908--17874333 Score: 475
Period size: 159 Copynumber: 2.7 Consensus size: 158
17873898 AACTTCATAT
* * *
17873908 GCTTAGACATGGAATGAACT-CCGATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
17873972 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGAATCGACCCGGTCCTCCCTGCGTGCTGTCAATCT
66 CCAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCTCCCTACGTGCTACCAATCC
* * *
17874037 TGCTGTCGTAACCCTCAGTTCGGTCCGA
131 CGCTGCCATAACCCTCAGTTCGGTCCGA
* * * ** * * * *
17874065 TCTTAGAC-TGGGAATGAGCTCCGTATGCCTAAGTTAACCCACAAAACGAGTGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
*
17874129 GCCAGTCGGAGAGGC-GTAATGCGCAAGTCGGGGATCGGCCCGGTCAC-CCTCTACGTGCTACCA
65 GCCAGTCGGAGAGGCAG-AATGCGCAAGTCGGGGATCGACCCGGTC-CTCC-CTACGTGCTACCA
* * * *
17874192 GTCCCGCTGCCATAACCCTCGGTTCGG-CTGGG
127 ATCCCGCTGCCATAACCCTCAGTTCGGTC-CGA
* * * *
17874224 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
17874289 CCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATAGCCCCGGTCC
66 CCAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCC
17874334 CTCCTGGATG
Statistics
Matches: 219, Mismatches: 42, Indels: 15
0.79 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 17 0.08
158 77 0.35
159 122 0.56
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCTCCCTACGTGCTACCAATCC
CGCTGCCATAACCCTCAGTTCGGTCCGA
Found at i:17874419 original size:26 final size:26
Alignment explanation
Indices: 17874383--17874434 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17874373 CCAGTCCAAT
17874383 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
17874409 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17874435 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17875686 original size:13 final size:13
Alignment explanation
Indices: 17875668--17875694 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
17875658 GGGCGCTCAA
17875668 CCGACCGGAGAGG
1 CCGACCGGAGAGG
17875681 CCGACCGGAGAGG
1 CCGACCGGAGAGG
17875694 C
1 C
17875695 ATAATGCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.44, T:0.00
Consensus pattern (13 bp):
CCGACCGGAGAGG
Found at i:17875976 original size:26 final size:26
Alignment explanation
Indices: 17875947--17875999 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17875937 CCGATCCGAT
17875947 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17875973 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17875999 C
1 C
17876000 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17876795 original size:26 final size:26
Alignment explanation
Indices: 17876757--17876809 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17876747 GGCTCAAAAT
*
17876757 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17876783 CTTAGACAT-GGAATGACCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17876809 C
1 C
17876810 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17877291 original size:26 final size:26
Alignment explanation
Indices: 17877255--17877310 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
17877245 CCGGTCCGAT
* *
17877255 CTTAGATTGGGAATGAACTCTGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
* *
17877281 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTAAG
17877307 CTTA
1 CTTA
17877311 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:17878154 original size:159 final size:157
Alignment explanation
Indices: 17877671--17878164 Score: 451
Period size: 159 Copynumber: 3.1 Consensus size: 157
17877661 GCTTAGGCAT
** *
17877671 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGGGCTCAGTCAGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCAGAG
* * * * * * *
17877736 AGGTAGAATGCACAAGTCGAGGATCAGCCCGGTGCCCCCTACGTGTTGTCGATCCTACTGTCGCA
66 AGGCAGAATGCACAAGCCGAGGATCAG-CCGGTCCCCCCTACGTGCTATCGATCCTACTGCCACA
* * *
17877801 ACCCTCGGTCCGATCTGATTTTAGACTG
130 ACCCTCGGTCCGGTATGATCTTAGACTG
* * ** * * *
17877829 GGAATTAACTCAGTATGCCTAAATCAACCCACGAAATGAGCGTGCGGGCACTGAGCTAGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCAGAG
* * * * * *
17877894 AGGCATAATACGCAAGCC-AGCGATCGGCCTGGTCCCCTTCTGCGTGCTATC-AGTCC--CGTAG
66 AGGCAGAATGCACAAGCCGAG-GATCAGCC-GGTCCCC-CCTACGTGCTATCGA-TCCTAC-T-G
* * * **
17877955 CCACAACCTTCGGTCTGGTAGGGGCTTAGACAT-
125 CCACAACCCTCGGTCCGGTATGATCTTAGAC-TG
* * * * * * *
17877988 GAAATGAACTCCCTTATGCCTAAGCCAACCAATGGAAT-AGGCGTACGGGCACTCAGCCGGCCAG
1 GGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGCACTCAGCCAGCCAG
* * *
17878052 AGAGGCAGAATGCACAAGCCGAGGATCAGCTCGATCCCCCCTTCGTGCTACCGATCCTACTGCCA
64 AGAGGCAGAATGCACAAGCCGAGGATCAGC-CGGTCCCCCCTACGTGCTATCGATCCTACTGCCA
* *
17878117 TAACCCTCGGTCCGGTTTGATCTTAGACTG
128 CAACCCTCGGTCCGGTATGATCTTAGACTG
*
17878147 GGAATGAACTTCGTATGC
1 GGAATGAACTCCGTATGC
17878165 TTAGACTGGG
Statistics
Matches: 258, Mismatches: 63, Indels: 30
0.74 0.18 0.09
Matches are distributed among these distances:
157 5 0.02
158 88 0.34
159 90 0.35
160 71 0.28
161 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCAGAG
AGGCAGAATGCACAAGCCGAGGATCAGCCGGTCCCCCCTACGTGCTATCGATCCTACTGCCACAA
CCCTCGGTCCGGTATGATCTTAGACTG
Found at i:17878174 original size:26 final size:26
Alignment explanation
Indices: 17878138--17878190 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17878128 CCGGTTTGAT
* *
17878138 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
17878164 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17878190 C
1 C
17878191 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17879079 original size:684 final size:685
Alignment explanation
Indices: 17877661--17879150 Score: 1771
Period size: 684 Copynumber: 2.2 Consensus size: 685
17877651 AACTTCGTAT
* *
17877661 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
* * * *
17877726 TC-AGCCAGAGAGGTAGAATGCACAAGTCGAGGATCAGCCCGGTGCCCCCTACGTGTTGTCGATC
66 TCGA-CCAGAAAGGTAGAATGCACAAGCCG-GGATCGGCCCGGTGCCCCCTACGTGTTGTCAATC
** * ** * *
17877790 CTACTGTCGCAACCCTCGGTCCGATCTGATTTTAGACTGGGAATTAACTCAGTATGCCTAAATCA
129 CTACTACCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCAGTATGCCTAAATCA
*
17877855 ACCCACGAAATGAGCGTGCGGGCACTGAGCTAGCCGGAGAGGCATAATACGCAAGCCAGCGATCG
194 ACCCACGAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGAGGCATAATACGCAAGCCAGCGATCG
* * * * * *
17877920 GCCTGGTCCCCTTCTGCGTGCTATCAGTCCCGTAGCCACAACCTTCGGTCTGGTAGGGGCTTAGA
259 GCCCGATCCCCTTCTGCGTGCTATCAGTCCCGTAGCCACAACCTTAGATCCGCTAGGGGCTTAGA
* * *
17877985 CATGAAATGAACTCCCTTATGCCTAAGCCAACCAATGGAATAGGCGTACGGGCACTCAGCCGGCC
324 CATGAAATGAACTCCCTTATGCCTAAGCCAACCAACGAAATAGGCGTACAGGCACTCAGCCGGCC
*
17878050 AGAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGATCCCCCCTTCGTGCTACCGATCCTACTGC
389 AGAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGATCCCCCCTACGTGCTACCGATCCTACTGC
* * * * **
17878115 CATAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATAA
454 CATAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGGATAA
** * *
17878180 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGAGCTCAGCCAACCAAAGAGGCCGG
519 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTAAGGGAGCTCAACCAACCAAAGAGGCCGA
* **** * * *
17878245 ATGGAGAGGCATAATGTGTAAGCCGGGGATCAGCTCGATCCCCCTTTACGTGCTGCCGATCCCGC
584 ACGGAGAGGCATAATACACAAGCCGGGGATCAGCTCGATCCCCCTCTACGTGCTGCCAATCCCGA
* * * **
17878310 TGTCGGTCCTGCTATCACAACCCTTGGTCCAACTAGG
649 TGCCGGTCCTACTACCACAACCCTCAGTCCAACTAGG
*
17878347 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
* * * **
17878412 TCGACCGGAAAGGTAGAATGCACAAGCCAGGGATCGGCCTGGT-CTTCCCTGTGTGTTGTCAATC
66 TCGACCAGAAAGGTAGAATGCACAAGCC-GGGATCGGCCCGGTGC-CCCCTACGTGTTGTCAATC
* * * * * *
17878476 TTGCTACCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTC
129 CTACTACCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAAC-TCAGTATGCCTAAATC
* ** * * * * * * *
17878540 AACCCATGAAATGAGCGTGCGGGTGCTGGGCCGGCCGGAGAGGCATAATGCGTAAGTCGGGGATC
193 AACCCACGAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGAGGCATAATACGCAAGCCAGCGATC
* *
17878605 GGCCCGAT-CCGTTACTGCGTGCTGTCAGTCCCGCT-GCCACAACCTTAGATCCGACT-GGGGCT
258 GGCCCGATCCCCTT-CTGCGTGCTATCAGTCCCG-TAGCCACAACCTTAGATCCG-CTAGGGGCT
* * * * * *
17878667 TAGACATGGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAGTC
320 TAGACATGAAATGAACTCCCTTATGCCTAAGCCAACCAACGAAATAGGCGTACAGGCACTCAGCC
* ** * * *
17878731 GGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAG-TCTGGT-CCCCCTACGTGCTATCGATCCT
385 GGCCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCTC-GATCCCCCCTACGTGCTACCGATCCT
* *
17878794 ACTGTCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACG
449 ACTGCCATAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACG
* * * ** * * * **
17878859 GATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTAAGGGTGCTCAACCGATCGGAGAG
514 GATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTAAGGGAGCTCAACCAACCAAAGAG
* * *
17878924 GCCGAACGGAGAGGCATAATACACAAGCCGGGGATTAGC-CTGGTCCCCCTCTGCGTGCTGCCAA
579 GCCGAACGGAGAGGCATAATACACAAGCCGGGGATCAGCTC-GATCCCCCTCTACGTGCTGCCAA
* * *
17878988 TCCCGATGCCGGTCCTACTACCACAACCCTCAGTTCGA-TTGAG
643 TCCCGATGCCGGTCCTACTACCACAACCCTCAGTCCAACTAG-G
* * * ** *
17879031 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
* * * * *
17879096 CCGACTAGAAAGGCAGAATGCACAAGCTGGGGATCGGCCCGAT-CCCCCTTACGTG
66 TCGACCAGAAAGGTAGAATGCACAAGC-CGGGATCGGCCCGGTGCCCCC-TACGTG
17879151 CTACCGATCC
Statistics
Matches: 674, Mismatches: 118, Indels: 26
0.82 0.14 0.03
Matches are distributed among these distances:
683 6 0.01
684 311 0.46
685 74 0.11
686 277 0.41
687 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (685 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
TCGACCAGAAAGGTAGAATGCACAAGCCGGGATCGGCCCGGTGCCCCCTACGTGTTGTCAATCCT
ACTACCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCAGTATGCCTAAATCAAC
CCACGAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGAGGCATAATACGCAAGCCAGCGATCGGC
CCGATCCCCTTCTGCGTGCTATCAGTCCCGTAGCCACAACCTTAGATCCGCTAGGGGCTTAGACA
TGAAATGAACTCCCTTATGCCTAAGCCAACCAACGAAATAGGCGTACAGGCACTCAGCCGGCCAG
AGAGGCAGAATGCACAAGCCGAGGATCAGCTCGATCCCCCCTACGTGCTACCGATCCTACTGCCA
TAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGGATAAAC
TCCGTATGCCTAAGTCAACCCACGAAACAAGCGTAAGGGAGCTCAACCAACCAAAGAGGCCGAAC
GGAGAGGCATAATACACAAGCCGGGGATCAGCTCGATCCCCCTCTACGTGCTGCCAATCCCGATG
CCGGTCCTACTACCACAACCCTCAGTCCAACTAGG
Found at i:17879230 original size:25 final size:26
Alignment explanation
Indices: 17879202--17879253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17879192 CTGGTCCGAT
17879202 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACGTGGAATGAACTCCGTATG
17879227 CTTAGACGTGGAATGAACTCCGTATG
1 CTTAGACGTGGAATGAACTCCGTATG
17879253 C
1 C
17879254 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCCGTATG
Found at i:17880050 original size:26 final size:26
Alignment explanation
Indices: 17880012--17880064 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17880002 GGCTCAAAAT
*
17880012 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17880038 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17880064 C
1 C
17880065 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17880912 original size:26 final size:26
Alignment explanation
Indices: 17880874--17880926 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17880864 GGCTCAAAAT
17880874 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17880900 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17880926 C
1 C
17880927 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17881103 original size:111 final size:111
Alignment explanation
Indices: 17880900--17881108 Score: 249
Period size: 111 Copynumber: 1.9 Consensus size: 111
17880890 ACTCCATATG
* * *
17880900 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTACGGATGCTCAGT
1 CTTAGACATGGAATGAACTCCGTAAGCATAAGCCAACCCACGAAAAGAGCGTACGGATGCTCAGT
* * * *
17880965 CGGTCGGAGAGGTAGAATGCGCGAGCCAGGGATGGCCCGATCCAAT
66 CGGTCGAAGAGGCAGAACGCGCAAGCCAGGGATGGCCCGATCCAAT
** * ** * * *
17881011 CTTAGAC-TGGGAATGAACTTTGTAAGCATAAGTCAACCCACGAAAAGAGCGTGTGGGTGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTAAGCATAAGCCAACCCACGAAAAGAGCGTACGGATGCTCAG
* *
17881075 TCGGTCGAAGAGGCATAACGTGCAAGCCAGGGAT
65 TCGGTCGAAGAGGCAGAACGCGCAAGCCAGGGAT
17881109 CAACCCGATC
Statistics
Matches: 80, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
110 1 0.01
111 79 0.99
ACGTcount: A:0.30, C:0.21, G:0.31, T:0.19
Consensus pattern (111 bp):
CTTAGACATGGAATGAACTCCGTAAGCATAAGCCAACCCACGAAAAGAGCGTACGGATGCTCAGT
CGGTCGAAGAGGCAGAACGCGCAAGCCAGGGATGGCCCGATCCAAT
Found at i:17881357 original size:26 final size:26
Alignment explanation
Indices: 17881328--17881380 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17881318 CCGCTCCGAT
17881328 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
17881354 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17881380 C
1 C
17881381 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17882379 original size:159 final size:158
Alignment explanation
Indices: 17882078--17882607 Score: 430
Period size: 159 Copynumber: 3.3 Consensus size: 158
17882068 ACTCCGTATG
* * * * * *
17882078 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAACGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGAGCGCTCAG
* * * * * * ** * * * *
17882142 -TCAGTCGGAGAGGCAGAATGCACAAGCTGGGGATTGGCCCGGTCCACCCCTGTGTGCTATC-GA
65 CT-GGCCAGAGAGGCAGAATGCGCAAGCCGGGAACCGACCCAGTCC-CCCCTGCGTGCT-GCGGA
* * *** *
17882205 TCTTGCTGGTGCAACCCTCCGTCCGATCT-GAT
127 TCCTAC-GCCACAACCCTCAGTCCGATCTAGAT
* * * * *
17882237 CTTAGGCTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGAGCGCTCAGC
* * * * **
17882302 TGGCCGGAGAGGCATAATGCGCAAGCTGGGAATCGACCTGGTCCCCCTCTGCGTGCTGCTGG-TC
66 TGGCCAGAGAGGCAGAATGCGCAAGCCGGGAACCGACCCAGTCCCCC-CTGCGTGCTGC-GGAT-
* * **
17882366 CCGTA-GCCACAACCCTCGGTCC-AGCTAGGG
128 CC-TACGCCACAACCCTCAGTCCGATCTAGAT
* * * * *
17882396 CTTAGACAT-GGAATGAAATCCCTATGCCTAAGCCAACCAATGAAACGGGTGTGCGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGAGCGCTCAG
* * *
17882460 CTGGCCAGAGAGGCAGAATGTGTAAGCCGGGGACCGACCCAGTCCCCCCTGCGTGCTGCGGATCC
65 CTGGCCAGAGAGGCAGAATGCGCAAGCCGGGAACCGACCCAGTCCCCCCTGCGTGCTGCGGATCC
* * * *
17882525 TACTGCCGCGACCCTCAGTCCGGT-TCGAT
130 TAC-GCCACAACCCTCAGTCCGATCTAGAT
*
17882554 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGC
17882608 AGACGTTTAG
Statistics
Matches: 298, Mismatches: 59, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 2 0.01
157 5 0.02
158 82 0.28
159 204 0.68
160 4 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGAGCGCTCAGC
TGGCCAGAGAGGCAGAATGCGCAAGCCGGGAACCGACCCAGTCCCCCCTGCGTGCTGCGGATCCT
ACGCCACAACCCTCAGTCCGATCTAGAT
Found at i:17883250 original size:26 final size:26
Alignment explanation
Indices: 17883214--17883263 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17883204 CTGATCTGAT
17883214 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
17883240 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17883264 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:17883622 original size:26 final size:26
Alignment explanation
Indices: 17883581--17883633 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17883571 CCGATCAGAT
17883581 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17883607 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
17883633 C
1 C
17883634 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17883955 original size:171 final size:169
Alignment explanation
Indices: 17883606--17883975 Score: 390
Period size: 171 Copynumber: 2.2 Consensus size: 169
17883596 AACTCCATAT
*
17883606 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTCAA
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTCAA
* ** * * * **
17883671 CCGGCCGGAGAGGCGTAATGCGCAAGCCGGGGATCAGTCTGGTCCCCCTCTGCATGCTGTTAATC
66 CCGGCCAGAGAGGCGTAATGAACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCAATC
* * * * *
17883736 TCACTGCCTGTCCTGCCACCACAGCCTTCAGTCCGGCTGGG
131 TCACTG-C-GTCCTACCACCACAACCCTCAGTCCGGCTCGA
* * *
17883777 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGC-GAGCACTCA
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAG-GCACTCA
** * *
17883841 GTCGGCCAGAGAGGCAG-AATGAACAAGCCGAGGATCAGCCCGGTTCCTCC-CTGCATGCTGCCG
65 ACCGGCCAGAGAGGC-GTAATGAACAAGCCGAGGATCAGCCCGG-TCCCCCTCTGCATGCTGCCA
* * *
17883904 ATCCTGCTACTG-GTCCTACTACCGCAACCCTCGGTCCGG-TCCGA
128 AT-CT-C-ACTGCGTCCTACCACCACAACCCTCAGTCCGGCT-CGA
* *
17883948 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTAGGAATGAACTCCGTATGC
17883976 TTAGACATGG
Statistics
Matches: 165, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
170 2 0.01
171 150 0.91
172 8 0.05
173 1 0.01
174 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (169 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTCAA
CCGGCCAGAGAGGCGTAATGAACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCAATC
TCACTGCGTCCTACCACCACAACCCTCAGTCCGGCTCGA
Found at i:17883978 original size:26 final size:26
Alignment explanation
Indices: 17883949--17884001 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17883939 CCGGTCCGAT
17883949 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17883975 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17884001 C
1 C
17884002 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17884854 original size:158 final size:157
Alignment explanation
Indices: 17884375--17884854 Score: 443
Period size: 158 Copynumber: 3.0 Consensus size: 157
17884365 AATAAATTTC
* * *
17884375 GTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCAGGCCGAAGAGGCAGAATTCG
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCAGGTCGAAGAGGCAGAATTCG
* * * ** * *
17884440 TAAGTTGGGAATCGACCCTG-TCCCCCCTACGTGCTGTCAATCCTGCTGTCGCAACCCTCGGTCT
66 TAAGCTGGG-ATCGACCC-GATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCC
**
17884504 GGTCTAATCTTAG-CTGGGAATGAACTCT
129 GGTCCGATCTTAGACTGGGAATGAACTCT
** * * * * *
17884532 GTATGCCTAAGTTAACCCACGAAACGAGCGT-CTGGGAGCTGAGCTGATCGAAGAGGCATAATTC
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGAGCTCAGCAGGTCGAAGAGGCAGAATTC
* ** * * **
17884596 GCAAGCTGGGGATCGACCC-AGTCCCAATCTGCGTGCTGTCGGTCCTGCTTCTACAACCCTCGAT
65 GTAAGCT-GGGATCGACCCGA-TCCC-CCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGAT
** * *
17884660 CCGGCTGGGGT-TTAGACAT-GGAATGAACTCC
127 CCGG-TCCGATCTTAGAC-TGGGAATGAACTCT
* * * * * * * ** *
17884691 CTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCGGTCATCCGGTTAAAGAGGCAGAATACG
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCAGGTCGAAGAGGCAGAATTCG
* *
17884756 TAAGCTGGAGATCGACCCGATCCCCCCTGCATGCTG-CTGATCCTGCTACCGCAACCCTCAATCC
66 TAAGCTGG-GATCGACCCGATCCCCCCTGCGTGCTGTC-GATCCTGCTACCGCAACCCTCGATCC
17884820 GGTCCGATCTTAGACTGGGAATGAACTCT
129 GGTCCGATCTTAGACTGGGAATGAACTCT
17884849 GTATGC
1 GTATGC
17884855 TTAGATTGGG
Statistics
Matches: 251, Mismatches: 58, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 74 0.29
158 94 0.37
159 79 0.31
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCAGGTCGAAGAGGCAGAATTCG
TAAGCTGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGG
TCCGATCTTAGACTGGGAATGAACTCT
Found at i:17884864 original size:26 final size:26
Alignment explanation
Indices: 17884828--17884880 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17884818 CCGGTCCGAT
* *
17884828 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
17884854 CTTAGATTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
17884880 C
1 C
17884881 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:17885738 original size:880 final size:878
Alignment explanation
Indices: 17883908--17885794 Score: 2264
Period size: 880 Copynumber: 2.1 Consensus size: 878
17883898 CTGCCGATCC
* * * *
17883908 TGCTACTGGTCCTACTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTA
* * **
17883973 TGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAGCCATAAAACGAGCGTGCAGGCGTTC
66 TGCTTAGA-ATGGGGATGAACTCCGTATGCCTAAGTCAA-CCATAAAACGAGCGTGCAGGCACTC
** * * **
17884037 AACCGGCTGGAGAGGTCGACCGAAGAGGCATAACGCGTAAGCTTGGGATCAGCCCAATCCTCCTT
129 AACCGGCCAGAGAGGCCGACCGAAGAGGCATAACGCGCAAGCCGGGGATCAGCCCAATCCTCCTT
* * * * * * * *
17884102 TGCGTACTGTCGATCCCGTTGTCGGTCCTCCTGCCACAACCCTTGATTCGGCTGGGGGTTAGACA
194 TACGTACTATCAATCCCGCTGTCGGTCCTCCTGCCACAACCCTAGATCCAGCTGGGGCTTAGACA
* * * *
17884167 TGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTGCGGGCGCTCAGTCGGTCGTA
259 TGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGA
* * * * *
17884232 GAAGTAGAATGCGCAAGCTAGGGATCAGTTCGGTCCCCCCACGTGCTGTCGATCCTGCTACTGGT
324 GAAGCAGAATGCGCAAGCTAGGGATCAGCTCGGTCCCCCCACATGCTGCCAATCCTGCTACTGGT
* * * * * *
17884297 CTTGCTATCGTAACCCTCGATTTGGTCCAATCTTATACTGGGAATGAACTTCGTATGCTTAGACA
389 CCTGCTATCGTAACCCTCGATTCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAAA
* * *
17884362 TGGAATAAATTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCAGGCCGAA
454 TGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCAGGCCGAA
* ** * * *
17884427 GAGGCAGAATTCGTAAGTTGGGAATCGACCCTGTCCCCCCTACGTGCTGTCAATCCTGCTGTCGC
519 GAGGCAGAATGCGTAAGCAGGGAATCGACCCAGTCCCCCCTACCTGCTATCAATCCTGCTGTCGC
* *
17884492 AACCCTCGGTCTGGTCTAATCTTAGCTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAAC
584 AACCCTCGGTCCGGTCTAATCTTAGCTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
* * * * * *
17884557 GAGCGTCTGGGAGCTGAGCTGATCGAAGAGGCATAATTCGCAAGCTGGGGATCGACCCAGTCCCA
649 AAGCGTCTGGGAGCTGAGCCGATCGAAGAGGCATAATGCGAAAGCTGAGGATCGACCCAATCCCA
* * * * *
17884622 ATCTGCGTGCTGTCGGTCCTGCTTCTACAACCCTCGATCCGGCTGGGGTTTAGACATGGAATGAA
714 ATCTGCGTGCTGTCGGTCCCGCTTCCACAACCCTCGATCCGACTGGGGCTTAGACATCGAATGAA
* * * * *
17884687 CTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCGGTCATCCGGTTAAAGAGGCAGAA
779 CTCCCTACGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGGTCATCCAGTCAAAGAGGCAAAA
17884752 TACGTAAGCTGGAGATCGACCCGATCCCCCCTGCA
844 TACGTAAGCTGGAGATCGACCCGATCCCCCCTGCA
**
17884787 TGCTGCTGATCCTGCTACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAAC-TCTGT
1 TGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC-GT
* * *
17884851 ATGCTTAGATTGGGGATGAAATCCGTATGCCTAAATCAACCA-ACGAAACGAG-GTGC-GAGCAC
65 ATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCATA--AAACGAGCGTGCAG-GCAC
** ** * * *
17884913 TCAGTCGGCCAGAGAGGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCC-CC
127 TCAACCGGCCAGAGAGGCCGACCGAAGAGGCATAACGCGCAAGCCGGGGATCAGCCCAATCCTCC
** * *
17884977 TTCTACGTGTTATCAATCCCGCTGTCGGTTCTGCTGCCACAACCCTCAG-TCCAGCTGGGGCTTA
192 TT-TACGTACTATCAATCCCGCTGTCGGTCCTCCTGCCACAACCCT-AGATCCAGCTGGGGCTTA
* * *
17885041 GACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGT
255 GACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGT
* * * * **
17885106 TGGAGAGGCAGAATGCGCAAGC-CGGGAATCGGC-CTGGTCCCCCTTGCATGCTGCCAATCCTGC
320 CGGAGAAGCAGAATGCGCAAGCTAGGG-ATCAGCTC-GGTCCCCC-CACATGCTGCCAATCCTGC
* * * **
17885169 TGCTGGTCCTGCTATCGTAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
382 TACTGGTCCTGCTATCGTAACCCTCGATTCGGTCCAATCTTAGACTGGGAATGAACTCCATATGC
* ** *
17885234 TTAGAAATGGAATAAACTTCGTATGCCTAAGCCCACCCACGAAATGAGCGTGCGGGCGCTCAGCC
447 TTAGAAATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCA
* * * * *
17885299 GGTCGGAGAGGCAGAATGCGTAAGCCAGGG-ATTGGCCCAGTCCCCCCTACCTGCTATCGATCCT
512 GGCCGAAGAGGCAGAATGCGTAAG-CAGGGAATCGACCCAGTCCCCCCTACCTGCTATCAATCCT
* *
17885363 GCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAA
576 GCTGTCGCAACCCTCGGTCCGGTCTAATCTTAG-CTGGGAATGAACTCT-GTATGCCTAAGTCAA
* * * * * *
17885427 CCCATGAAACAAGCGTGC-GGGTGCTGAGCCGGTCGAAGAGGCATGATGCGAAAGTTGAGGATTG
639 CCCACGAAACAAGCGT-CTGGGAGCTGAGCCGATCGAAGAGGCATAATGCGAAAGCTGAGGATCG
**
17885491 ACCCAATCCCCCTAC-GCGTGCTGTCGGTCCCG-TTGCCACAACCCTCGATCCGACTGGGGCTTA
703 ACCCAATCCCAAT-CTGCGTGCTGTCGGTCCCGCTT-CCACAACCCTCGATCCGACTGGGGCTTA
* *
17885554 GACATCGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGTGTGCGGGC-GTCGAGT-CA
766 GACATCGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGGTC-A-TCCA
** * * * * * * *
17885617 GTCGGAGAGGTAAAATGC-TCAAG-TCGGGGATCGGCCCGGTCCCCTCTGCG
829 GTCAAAGAGGCAAAATACGT-AAGCT-GGAGATCGACCCGATCCCCCCTGCA
* * *
17885667 TGCTG-TCGATCCTGCTACCGCCACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGT
1 TGCTGCT-GATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGT
* * *
17885731 ATGCTTAGAATGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACT
65 ATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAA-CCATAAAACGAGCGTGCAGGCACT
17885795 GAGCCGACCG
Statistics
Matches: 847, Mismatches: 135, Indels: 50
0.82 0.13 0.05
Matches are distributed among these distances:
877 10 0.01
878 196 0.23
879 310 0.37
880 313 0.37
881 17 0.02
882 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (878 bp):
TGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTA
TGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCATAAAACGAGCGTGCAGGCACTCAA
CCGGCCAGAGAGGCCGACCGAAGAGGCATAACGCGCAAGCCGGGGATCAGCCCAATCCTCCTTTA
CGTACTATCAATCCCGCTGTCGGTCCTCCTGCCACAACCCTAGATCCAGCTGGGGCTTAGACATG
CAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
AGCAGAATGCGCAAGCTAGGGATCAGCTCGGTCCCCCCACATGCTGCCAATCCTGCTACTGGTCC
TGCTATCGTAACCCTCGATTCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAAATG
GAATAAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCAGGCCGAAGA
GGCAGAATGCGTAAGCAGGGAATCGACCCAGTCCCCCCTACCTGCTATCAATCCTGCTGTCGCAA
CCCTCGGTCCGGTCTAATCTTAGCTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAA
GCGTCTGGGAGCTGAGCCGATCGAAGAGGCATAATGCGAAAGCTGAGGATCGACCCAATCCCAAT
CTGCGTGCTGTCGGTCCCGCTTCCACAACCCTCGATCCGACTGGGGCTTAGACATCGAATGAACT
CCCTACGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGGTCATCCAGTCAAAGAGGCAAAATA
CGTAAGCTGGAGATCGACCCGATCCCCCCTGCA
Found at i:17885744 original size:26 final size:26
Alignment explanation
Indices: 17885708--17885760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17885698 CCAGTCTGAT
*
17885708 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTTCGTATG
*
17885734 CTTAGAATGGGGATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTTCGTATG
17885760 C
1 C
17885761 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTTCGTATG
Found at i:17885969 original size:501 final size:510
Alignment explanation
Indices: 17884997--17885981 Score: 1103
Period size: 501 Copynumber: 1.9 Consensus size: 510
17884987 TATCAATCCC
* * * * *
17884997 GCTGTCGGTTCTGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCTATAT
1 GCTGTCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATCGAATGAACTCCATAC
* * *
17885062 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGTTGGAGAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAAAATGCGCAAG
* * * *
17885127 CCGGGAATCGGCCTGGTCCCCCTTGCATGCTGCCAATCCTGCTGCTGGTCCTGCTATCGTAACCC
131 CCGGGAATCGGCCCGGTCCCCCTTGCATGCTG---ATCCTGCTGCTGATCCTGCTACCGCAACCC
* * *
17885192 TTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAAATGGAATAAACTTCGTA
193 TCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAAATGGAATAAACTTCGTA
* * * ** *
17885257 TGCCTAAGCCCACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAA
258 TGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAA
* * ** **
17885322 GCCAGGGATTGGCCCAGTCCCCCCTACCTGCTATCGATCCTGCTGTCGTAACCCTCGGTCCGGTC
323 GCCAGGGATCGGCCCAGTCCCCCCTACCTGCTACCGATCCCACTGTCACAACCCTCGGTCCGGTC
* * * * *
17885387 TGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCT
388 TGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGAT
* * *
17885452 GAGCCGGTCGAAGAGGCATG-ATGCGAAAGTTGAGGATTGACCCAATCCCCCTACGCGT
453 CAGCCGGCCAAAGAGGCA-GAATGCGAAAGTTGAGGATTGACCCAATCCCCCTACGCGT
* *
17885510 GCTGTCGGTCCCGTTGCCACAACCCTC-GATCC-GACTGGGGCTTAGACATCGAATGAACTCCCT
1 GCTGTCGGTCCCGCTGCCACAACCCTCAG-TCCAG-CTGGGGCTTAGACATCGAATGAACTCCAT
* * * * *
17885573 ACGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCG-TCGAGTCAGTCGGAGAGGTAAAATGCTC
64 ACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCAGTCGGAGAGGCAAAATGCGC
* * * *
17885637 AAGTCGGGGATCGGCCCGGT-CCCC-T-C-TGC-G-TGCTG-T-C-GATCCTGCTACCGCCACCC
128 AAGCCGGGAATCGGCCCGGTCCCCCTTGCATGCTGATCCTGCTGCTGATCCTGCTACCGCAACCC
* * * *
17885693 TCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAG-AATGGGGATGAACTTCGT
193 TCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAAAT-GGAATAAACTTCGT
* * * *
17885757 ATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACTGAGCCGACCGGAGGGGCATG-ATGCGC
257 ATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCA-GAATGCGC
* * * * * * * *
17885821 AAGTCGGGGATCGG-CCTGATCCCTCTCTTCGTGCTGCCGGTCCCACTG-CACAACCCTCGGTCC
321 AAGCCAGGGATCGGCCCAG-TCCC-CCCTACCTGCTACCGATCCCACTGTCACAACCCTCGGTCC
* *
17885884 GGT-TGGGGT-TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACT-AAACAGGCGTG
384 GGTCT--GATCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCA-TGAAACAAGCGTG
*
17885945 CGGGCGATCAGTCGGCCAAAGAGGCAGAATGCGAAAG
445 CGGGCGATCAGCCGGCCAAAGAGGCAGAATGCGAAAG
17885982 CCGAAGATCA
Statistics
Matches: 395, Mismatches: 65, Indels: 36
0.80 0.13 0.07
Matches are distributed among these distances:
500 8 0.02
501 224 0.57
502 22 0.06
503 1 0.00
504 4 0.01
508 1 0.00
509 3 0.01
510 1 0.00
511 1 0.00
512 8 0.02
513 122 0.31
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (510 bp):
GCTGTCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATCGAATGAACTCCATAC
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAAAATGCGCAAG
CCGGGAATCGGCCCGGTCCCCCTTGCATGCTGATCCTGCTGCTGATCCTGCTACCGCAACCCTCG
GTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAAATGGAATAAACTTCGTATGC
CTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCC
AGGGATCGGCCCAGTCCCCCCTACCTGCTACCGATCCCACTGTCACAACCCTCGGTCCGGTCTGA
TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGATCAG
CCGGCCAAAGAGGCAGAATGCGAAAGTTGAGGATTGACCCAATCCCCCTACGCGT
Found at i:17886037 original size:342 final size:342
Alignment explanation
Indices: 17885391--17886541 Score: 1107
Period size: 342 Copynumber: 3.3 Consensus size: 342
17885381 CCGGTCTGAT
* * * **
17885391 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCACTGAGC
* * * * * ** * * *
17885456 CGGTCGAAGAGGCATGATGCGAAAGTTGAGGATTGACCCAATCCCCCTAC-GCGTGCTGTCGGTC
65 CGGTCGGAGAGGCATGATGCGCAAGTCGGGGATTGGCCTGATCCCTCTACTTCGTGCTGCCGGTC
* * *
17885520 CCGTTGCCACAACCCTCGATCCGACTGGGGCTTAGACATCGAATGAACTCCCTACGCCTAAGCCA
130 CCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * *
17885585 ACCCACGAAACGGGTGTGCGGGCGTCGAGTCAGTCGGAGAGGTAA-AATGCTCAAGTCGGGGATC
195 ACCCACTAAACAGGTGTGCGGGCGTC-AGTCGGCCAGAGAGG-AAGAATGCGCAAGCCGGGGATC
* * * * *
17885649 GGCCCGGTCCCCTCTGCGTGCTGTCGATCCTGCTACCGCCACCCTCGGTCCAGTCTGATCTTAGA
258 AGCCCGGTCCCCCCTGCGTGCTGCCGATCTTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGA
17885714 CTGGGAATGAACTTCGTATG
323 CTGGGAATGAACTTCGTATG
* * *
17885734 CTTAGAATGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCACTGAGC
** * *
17885799 CGACCGGAGGGGCATGATGCGCAAGTCGGGGATCGGCCTGATCCCTCT-CTTCGTGCTGCCGGTC
65 CGGTCGGAGAGGCATGATGCGCAAGTCGGGGATTGGCCTGATCCCTCTACTTCGTGCTGCCGGTC
* * ** *
17885863 CCACTG-CACAACCCTCGGTCCGGTTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * **
17885927 ACCCACTAAACAGGCGTGCGGGCGATCAGTCGGCCAAAGAGGCAGAATGCGAAAGCCGAAGATCA
195 ACCCACTAAACAGGTGTGCGGGCG-TCAGTCGGCCAGAGAGGAAGAATGCGCAAGCCGGGGATCA
* * ** * *
17885992 GCCCGGTCCCCCCTGCGCGTTGCCGATCTTGCTACCAAAACCCTCGGTCTAGTCCGATCTTAGAC
259 GCCCGGTCCCCCCTGCGTGCTGCCGATCTTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGAC
* *
17886057 TGGGAATGAACTCCTTATG
324 TGGGAATGAACTTCGTATG
* * ** *
17886076 CTTAGACTAGGG-ATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTCAG
1 CTTAGAAT-GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG-GCACTGAG
* * * * * * *
17886140 TCGGTCGGAGAGGCGTAATGTGCAAGTCGGGGATTAGCCTGGTCCCACTCTGTGTGCTGTCGATC
64 CCGGTCGGAGAGGCATGATGCGCAAGTCGGGGATTGGCCTGAT-CC-CTC----TACT-TCG---
* * *
17886205 TTGCTGCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGT
119 -TGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCT
* * * * *
17886270 ATGCCTAATCCAACCCA-TGAAACAAGTGTGCGGGCGCTCAGTCGACCTGAGAGGAAGAATACGC
183 ATGCCTAAGCCAACCCACT-AAACAGGTGTGCGGGCG-TCAGTCGGCCAGAGAGGAAGAATGCGC
* *
17886334 ATGCCGGGGATCAGCCCGGTTCCCCCCTGCGTGCTACCGATCCTGCTGCTAGTCCTGTTGTCGCA
246 AAGCCGGGGATCAGCCCGG-TCCCCCCTGCGTGCTGCCGAT-CT--TGCTA---C------CGCA
* *
17886399 ACCCTCGATCC-GATCTGATCTTAGACTGGGAATGAACTTTGTATG
298 ACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTTCGTATG
* * * * *
17886444 CTTAGACAT-CGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA-
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCACTGAG
* *
17886507 CTCAGTCGGAGAGGCA-GAATGCGCAAGTCAGGGAT
64 C-CGGTCGGAGAGGCATG-ATGCGCAAGTCGGGGAT
17886542 CGGTCCAGTC
Statistics
Matches: 652, Mismatches: 118, Indels: 51
0.79 0.14 0.06
Matches are distributed among these distances:
341 2 0.00
342 255 0.39
343 117 0.18
344 3 0.00
348 1 0.00
349 2 0.00
350 3 0.00
354 15 0.02
355 109 0.17
356 18 0.03
357 2 0.00
359 5 0.01
362 1 0.00
367 2 0.00
368 115 0.18
369 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (342 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCACTGAGCC
GGTCGGAGAGGCATGATGCGCAAGTCGGGGATTGGCCTGATCCCTCTACTTCGTGCTGCCGGTCC
CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACTAAACAGGTGTGCGGGCGTCAGTCGGCCAGAGAGGAAGAATGCGCAAGCCGGGGATCAGC
CCGGTCCCCCCTGCGTGCTGCCGATCTTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTG
GGAATGAACTTCGTATG
Found at i:17886091 original size:26 final size:26
Alignment explanation
Indices: 17886050--17886102 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17886040 CTAGTCCGAT
*
17886050 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
17886076 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
17886102 C
1 C
17886103 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17886913 original size:159 final size:157
Alignment explanation
Indices: 17886443--17887275 Score: 564
Period size: 159 Copynumber: 5.2 Consensus size: 157
17886433 AACTTTGTAT
* *
17886443 GCTTAGACATCGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC-A
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
17886507 CTCAGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGTCCAGTCCCCCTTGCATGCTATCGATC
66 C-CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-TGCATGCTGTCGATC
** *
17886572 CTGCTACCGCAACCATCAGT-TCGGTCCAA
129 CTGCTGTCGCAACCCTCAGTCT-GGTCCAA
* * * * *
17886601 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * ** * * * * ** *
17886665 GCAGACCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCTCAGCGTGCTACCGGT
65 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT--GCATGCTGTCGAT
* * ** * ****
17886730 CCCGCTG-CAACAACTTTCGGTCTGGTTGGG
128 CCTGCTGTC-GCAACCCTCAGTCTGGTCCAA
* * * *
17886760 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * *
17886825 TCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTGCGCCCCTGCTTACTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-C-CCCCTGCATGCTGTCGATC
*
17886890 CTGCTGTCGCAACCCTCAATCTGGTCCAA
129 CTGCTGTCGCAACCCTCAGTCTGGTCCAA
* * * * * * ** * *
17886919 TCTTAGAC-TAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTACAAGCGGTCG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* ** * * * * * *
17886983 GCCTATCGGAGAGGCATAATCCGCAAGCCGAGCATCAGCCCGGTCCCCCTTTGCATGCTGTCAAT
65 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC--TGCATGCTGTCGAT
* * ***
17887048 CCCGCTGTCGGTCCTGCTAACACAAGCCTCAGTCTAG-CTGGG
128 --C-CTG-CTGT-C-GC--A-AC---CCTCAGTCTGGTC-CAA
* * * * *
17887090 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* ** * * * * *
17887155 CCGGTCAGAGAGGCAGAATGCGCAAGCTAGGGATCGACTCGGTCCCTCCTACGTGCTGTTGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCTGCATGCTGTCGATCC
* * * * * *
17887220 TGCTGTGGTAACCCTCAATCCGATCCGA
130 TGCTGTCGCAACCCTCAGTCTGGTCCAA
* *
17887248 TCTTAGAC-TGGGAATGAACTCCGCATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
17887276 TTAGACTGGG
Statistics
Matches: 505, Mismatches: 140, Indels: 60
0.72 0.20 0.09
Matches are distributed among these distances:
157 7 0.01
158 123 0.24
159 236 0.47
160 4 0.01
161 8 0.02
162 4 0.01
163 3 0.01
164 2 0.00
165 2 0.00
166 3 0.01
167 4 0.01
168 3 0.01
170 11 0.02
171 92 0.18
172 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCATGCTGTCGATCCT
GCTGTCGCAACCCTCAGTCTGGTCCAA
Found at i:17887026 original size:318 final size:323
Alignment explanation
Indices: 17886443--17887275 Score: 925
Period size: 318 Copynumber: 2.6 Consensus size: 323
17886433 AACTTTGTAT
* * * * *
17886443 GCTTAGACATCGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
* * * * * *
17886508 TCAGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGTCCAGTCCCCCTTGCATGCTATCGATCC
66 TCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-TGCATGCTGTCGATCC
** * * *
17886573 TGCTACCGCAACCATCAGT-TCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
130 TGCTGTCGCAACCCTCAATCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** ** * *
17886637 ACCCATGAAACGAGCGTGCGGGCACTGAGCAGACCGGAGAGGCATAATGTGCAAGCCGAGGATCG
194 ACCCACGAAACGAGCGTACAAGCACTGAGCAGACCGGAGAGGCATAATCCGCAAGCCGAGCATCA
* * * * *
17886702 GCCCGGTCCCCC-T-CA-GC-GTGC-TACCG-GTC-CC-GCT-GCAACAA-CTTTCGGTCTGGTT
259 GCCCGGTCCCCCTTGCATGCTGT-CATACCGCGTCGCCTGCTAAC-ACAAGC-CTCAGTCTAGCT
17886757 GGG
321 GGG
* *
17886760 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
* * *
17886825 TCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTGCGCCCCTGCTTACTGTCGATC
66 TCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-C-CCCCTGCATGCTGTCGATC
* *
17886890 CTGCTGTCGCAACCCTCAATCTGGTCCAATCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCA
129 CTGCTGTCGCAACCCTCAATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** ** *
17886955 ACCCACGAAACGAGCTTACAAGCGGTCG-GCCTATCGGAGAGGCATAATCCGCAAGCCGAGCATC
194 ACCCACGAAACGAGCGTACAAGCACT-GAGCAGACCGGAGAGGCATAATCCGCAAGCCGAGCATC
*
17887019 AGCCCGGTCCCCCTTTGCATGCTGTCAATCCCGCTGTCGGTCCTGCTAACACAAGCCTCAGTCTA
258 AGCCCGGTCCCCC-TTGCATGCTGTC-ATACCGC-GTC-G-CCTGCTAACACAAGCCTCAGTCTA
17887084 GCTGGG
318 GCTGGG
* * *
17887090 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
* * * * * * *
17887155 CCGGTCAGAGAGGCAGAATGCGCAAGCTAGGGATCGACTCGGTCCCTCCTACGTGCTGTTGATCC
66 TCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCC-CCTGCATGCTGTCGATCC
* * * * * *
17887220 TGCTGTGGTAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGCATGC
130 TGCTGTCGCAACCCTCAATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
17887276 TTAGACTGGG
Statistics
Matches: 431, Mismatches: 65, Indels: 28
0.82 0.12 0.05
Matches are distributed among these distances:
317 95 0.22
318 130 0.30
319 6 0.01
320 1 0.00
321 2 0.00
322 3 0.01
323 2 0.00
324 4 0.01
326 3 0.01
328 2 0.00
329 65 0.15
330 116 0.27
331 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (323 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
TCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGCATGCTGTCGATCCT
GCTGTCGCAACCCTCAATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTACAAGCACTGAGCAGACCGGAGAGGCATAATCCGCAAGCCGAGCATCAGC
CCGGTCCCCCTTGCATGCTGTCATACCGCGTCGCCTGCTAACACAAGCCTCAGTCTAGCTGGG
Found at i:17888001 original size:26 final size:26
Alignment explanation
Indices: 17887972--17888024 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17887962 GGCTTAAAAT
17887972 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17887998 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17888024 C
1 C
17888025 CTAAGCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17888141 original size:12 final size:12
Alignment explanation
Indices: 17888124--17888158 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
17888114 ATGTTGTCGA
*
17888124 TCCTGCTACTGG
1 TCCTGCTACCGG
17888136 TCCTGCTACCGG
1 TCCTGCTACCGG
17888148 TCCTGCTACCG
1 TCCTGCTACCG
17888159 CAACCCTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.09, C:0.40, G:0.23, T:0.29
Consensus pattern (12 bp):
TCCTGCTACCGG
Found at i:17888727 original size:26 final size:26
Alignment explanation
Indices: 17888689--17888741 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17888679 CCGGTCTGAT
17888689 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17888715 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17888741 C
1 C
17888742 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17889034 original size:158 final size:158
Alignment explanation
Indices: 17888715--17889057 Score: 404
Period size: 158 Copynumber: 2.2 Consensus size: 158
17888705 ACTCCATATG
* * *
17888715 CTTAGACATGGAATTAACTCCGTATGCCTAAGCTAACCCACAAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCGCTCAGT
* *
17888780 TGACCAGAGAGGCATAATGCGCAAGCCTGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGGTCCC
66 CGACCAGAGAGGCAGAATGCGCAAGCCTGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGGTCCC
* * ** *
17888845 ACAGCCACAACCCTCAGTTCGGTTGGGT
131 ACAGCCACAACCCTCAGTCCAGTCCGAT
* * ** **
17888873 CTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCGCTCAGT
* * * * * *
17888938 CGATCAGAGAGGTAGAATGCGTAAG-CTGAGGATTCG-TCCGGTCCCCTTTGCGTGCTGTCGTTC
66 CGACCAGAGAGGCAGAATGCGCAAGCCTG-GGA-TCGACCCGGTCCCCCTTGCGTGCTGTCGGTC
* * * *
17889001 CTACTGTCGCAACCCTCAGTCCAGTCCGAT
129 CCACAGCCACAACCCTCAGTCCAGTCCGAT
17889031 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17889058 TTAGACTAGG
Statistics
Matches: 154, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
157 4 0.03
158 147 0.95
159 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCGCTCAGT
CGACCAGAGAGGCAGAATGCGCAAGCCTGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGGTCCC
ACAGCCACAACCCTCAGTCCAGTCCGAT
Found at i:17889948 original size:26 final size:26
Alignment explanation
Indices: 17889912--17889964 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17889902 CCGGTTTGAT
* *
17889912 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
17889938 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17889964 C
1 C
17889965 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17890848 original size:26 final size:25
Alignment explanation
Indices: 17890807--17890858 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
17890797 CTGGTCTGAT
*
17890807 CTTAGACTGGAATGAACACCGTATG
1 CTTAGACTAGAATGAACACCGTATG
*
17890832 CTTAGACATAGAATGAACTCCGTATG
1 CTTAGAC-TAGAATGAACACCGTATG
17890858 C
1 C
17890859 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (25 bp):
CTTAGACTAGAATGAACACCGTATG
Found at i:17891130 original size:159 final size:156
Alignment explanation
Indices: 17890832--17891334 Score: 587
Period size: 159 Copynumber: 3.2 Consensus size: 156
17890822 ACACCGTATG
* * * *
17890832 CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAGC
* * ** *
17890897 CGACCGGAGAGGCAGAATGCGCAAGCCATGGATCGGCTCGGGGCCCCACTACGTGCTGTCGATCC
65 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC-CCGATCCCCCCTACGTGCTGTCGATCC
17890962 TGCTACCACAACCCTCAGTCTGGTCTGAT
129 TGCTACCACAACCCTC-GTCTGGTCTGAT
* *
17890991 CTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTGAGC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAGC
* * *
17891056 TGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
65 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCC
* * **
17891121 CGCTGCCACAACCCTCGGTCTGG-CTGGGG
129 TGCTACCACAACCCTC-GTCTGGTCT-GAT
* * * * *
17891150 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAACCGGGCG-AGCTGGTGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTA-CGGGAGCTCAG
* * * * * *
17891214 CCGAGCGGAGAGGCAGAGTGCGCAAGCCGGGGATCGACCCGATCCCCCATACGTGCTATCGATCC
64 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
** * *
17891279 TGCTACCGTAACCCTCGATCCGATCTGAT
129 TGCTACCACAACCCTCG-TCTGGTCTGAT
*
17891308 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
17891335 TTAGACATGG
Statistics
Matches: 292, Mismatches: 44, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
157 2 0.01
158 65 0.22
159 222 0.76
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTG
CTACCACAACCCTCGTCTGGTCTGAT
Found at i:17891478 original size:184 final size:184
Alignment explanation
Indices: 17891149--17891510 Score: 453
Period size: 184 Copynumber: 2.0 Consensus size: 184
17891139 TCTGGCTGGG
* * * * * *
17891149 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAACCGGGCGAGCTGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAA
* *
17891214 CCGAGCGGAGAGGCAGAGTGCGCAAGCCGGGGATCGACCCGATCCCCCATACGTGCTATCGATCC
66 CCGAGCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCATACGTGCTATCGATCC
* *
17891279 TGCTACCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATAT
131 TACTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATAT
* * *
17891333 GCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAGCCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAA
* * * * * *
17891398 CCG-GTCGGAGAGGTAGAATGCTCATA-TCGGGGATCAACCC-AGTCCCTCC-TGCGTGCTGTTG
66 CCGAG-CGGAGAGGCAGAATGCGCA-AGCCGGGGATCAACCCGA-TCCC-CCATACGTGCTATCG
* * **
17891459 ATCCTACTACTGCAACCCTCGGTTTGATCTGATCTTAGACTGGGAATGAACT
127 ATCCTACTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACT
17891511 TCTTATGCCT
Statistics
Matches: 151, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
183 2 0.01
184 146 0.97
185 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAA
CCGAGCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCATACGTGCTATCGATCC
TACTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:17891591 original size:501 final size:506
Alignment explanation
Indices: 17890649--17891662 Score: 1233
Period size: 501 Copynumber: 2.0 Consensus size: 506
17890639 TAGACTGGGG
* * *
17890649 ATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAGCATGCGAGTGCTCAGTCGGCCGGAGAGG
1 ATGAACTCCCTATGCCCAAGCCAACCCACGAAACGAGCATGCGAGTGCTCAGCCGGCCGGAGAGG
* * *
17890714 CAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTTGATCCTGCTCCTGGTCCT
66 CAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCATACGTGC--TTGA-----CTCCTGATCCT
* * * *
17890779 GCTATCATAAACCTCGATCTGGTCTGATCTTAGACTGGAATGAACACCGTATGCTTAGACATAGA
124 GCTACCATAAACCTCGATCCGATCTGATCTTAGACTGGAATGAACACCATATGCTTAGACATAGA
* * * *
17890844 ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGG
189 ATGAACTCCCTAAGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGACCGGAGAGG
* ** ** *
17890909 CAGAATGCGCAAGCCATGGATCGGCTCGGGGCCCCACTACGTGCTGTCGATCCTGCTACCACAAC
254 CAGAATGCGCAAGCCAGGGATCAACTCCAGGCCCCACTACGTGCTGTCGATCCTACTACCACAAC
* *
17890974 CCTCAGTCTGGTCTGATCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
319 CCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
*
17891039 GCGTACGGGAGCTGAGCTGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCT
384 GCGTACGGGAGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCT
* * *
17891104 CTGCGTGCTGTC-GATCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGA
449 CTGCGTGCTGCCAG-TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
* * *
17891162 ATGAACTCCCTATGCCTAAGCCAACCCACGAACCGGGCGA-GCTG-GTGCTCAGCCGAG-CGGAG
1 ATGAACTCCCTATGCCCAAGCCAACCCACGAAACGAGC-ATGC-GAGTGCTCAGCCG-GCCGGAG
*
17891224 AGGCAGAGTGCGCAAGCCGGGGATCGACCCGATCCCCCATACGTGC-T-A-T-C-GATCCTGCTA
63 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCATACGTGCTTGACTCCTGATCCTGCTA
* * * *
17891284 CCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATG
128 CCATAAACCTCGATCCGATCTGATCTTAGACT-GGAATGAACACCATATGCTTAGACATAGAATG
* * ** *
17891349 AACTCCCTAAGCCTAAGCCAGCCCACGAAATGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAG
192 AACTCCCTAAGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAG
* * * * * * **
17891414 AATGCTCATA-TCGGGGATCAAC-CCAGTCCCTC-CTGCGTGCTGTTGATCCTACTACTGCAACC
257 AATGCGCA-AGCCAGGGATCAACTCCAGGCCC-CACTACGTGCTGTCGATCCTACTACCACAACC
* * * * * * *
17891476 CTCGGTTTGATCTGATCTTAGACTGGGAATGAACTTCTTATGCCTAAGTCAACCTATGAAATGAG
320 CTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *** * * * *
17891541 CGTGCGGGTGCTGAGCCGGTTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCTCTC
385 CGTACGGGAGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTC
* *
17891606 TGCGTGTTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
450 TGCGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
17891663 GTTCTCGAGG
Statistics
Matches: 429, Mismatches: 65, Indels: 26
0.82 0.12 0.05
Matches are distributed among these distances:
501 227 0.53
502 102 0.24
503 2 0.00
509 1 0.00
510 1 0.00
513 93 0.22
514 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (506 bp):
ATGAACTCCCTATGCCCAAGCCAACCCACGAAACGAGCATGCGAGTGCTCAGCCGGCCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCATACGTGCTTGACTCCTGATCCTGCTACCA
TAAACCTCGATCCGATCTGATCTTAGACTGGAATGAACACCATATGCTTAGACATAGAATGAACT
CCCTAAGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATG
CGCAAGCCAGGGATCAACTCCAGGCCCCACTACGTGCTGTCGATCCTACTACCACAACCCTCAGT
CTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACG
GGAGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTG
CTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
Found at i:17891908 original size:26 final size:26
Alignment explanation
Indices: 17891870--17891922 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17891860 GGCACAAAAT
17891870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17891896 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17891922 C
1 C
17891923 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17892260 original size:26 final size:25
Alignment explanation
Indices: 17892211--17892260 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
17892201 CTGGTCCGAT
**
17892211 CTTAGACTGGGATGAACTTTGTATC
1 CTTAGACTGGGATGAACTCCGTATC
17892236 CTTAGACTGTGGATGAACTCCGTAT
1 CTTAGACTG-GGATGAACTCCGTAT
17892261 GCCTAAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATC
Found at i:17892606 original size:26 final size:26
Alignment explanation
Indices: 17892565--17892617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17892555 CCGATCCGAT
17892565 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
17892591 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17892617 C
1 C
17892618 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17893181 original size:26 final size:26
Alignment explanation
Indices: 17893144--17893195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17893134 GCTCAAAATG
*
17893144 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17893170 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
17893196 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17893672 original size:26 final size:26
Alignment explanation
Indices: 17893643--17893695 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17893633 CTAGTCCGAT
17893643 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
* ** *
17893669 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
17893695 C
1 C
17893696 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:17894052 original size:26 final size:26
Alignment explanation
Indices: 17894023--17894075 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17894013 TCGGTCCGAT
17894023 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17894049 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17894075 C
1 C
17894076 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17894557 original size:26 final size:26
Alignment explanation
Indices: 17894519--17894571 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17894509 CCGGTCCGAT
*
17894519 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
17894545 CTTAGACAT-GGAATGAACTCCACATG
1 CTTAGAC-TGGGAATGAACTCCACATG
17894571 C
1 C
17894572 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:17894669 original size:184 final size:181
Alignment explanation
Indices: 17894363--17894721 Score: 445
Period size: 184 Copynumber: 2.0 Consensus size: 181
17894353 TCTGACTGGG
* *
17894363 GCTTAGACATGGAATGAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGACGCTCA
1 GCTTAGACATGGAATGAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCA
* * *
17894428 ACCGAAGAGGCAGAATGCGCAAGCTAAGAATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGC
66 ACCGAAGAGGCAGAATGCGCAAGCGAAGAATAGACCCGATCCCCCCTACGTGCTGTCGATCCTGC
* * *
17894493 TATCAAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
131 TACCAAAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* *
17894544 GCTTAGACATGGAATG-AACTCCAC-ATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTC
1 GCTTAGACATGGAATGAAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTC
* * * ** * * * *
17894607 AGTCGGACAGAGAGGCAGAATGCGTAAGCCGGGGATTAGA-TCGGTCCCTCCTACGTGCTGTCGA
65 A-ACCG--A-AGAGGCAGAATGCGCAAG-CGAAGAATAGACCCGATCCCCCCTACGTGCTGTCGA
* **
17894671 TCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACT
125 TCCTGCTACCAAAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACT
17894722 TCGTATGCAT
Statistics
Matches: 150, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
180 42 0.28
181 19 0.13
183 1 0.01
184 82 0.55
185 6 0.04
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (181 bp):
GCTTAGACATGGAATGAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCA
ACCGAAGAGGCAGAATGCGCAAGCGAAGAATAGACCCGATCCCCCCTACGTGCTGTCGATCCTGC
TACCAAAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:17894979 original size:158 final size:156
Alignment explanation
Indices: 17894544--17895045 Score: 397
Period size: 158 Copynumber: 3.2 Consensus size: 156
17894534 AACTCCATAT
**
17894544 GCTTAGACATGGAATGAACTCCAC-ATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCA
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
* * * * * * * * * *
17894608 GTCGGA-CAGAGAGGCAGAATGCGTAAGCCGGGGATTAGATCGGTCCCTCCTACGTGCTGTCGAT
65 G-CCGACCGGAGAGGCAGAATGCGCAAG-CGAGGATCAG-CCCGTCCCCCCTGCGTGCTGCCGAT
* **
17894672 CCTGCTGCCGCAACCCTCGATCCGATCCGA
127 CCCGCTGCAACAACCCTCGATCCGATCCGA
* * * * * * * ** *
17894702 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACAAAACAAGCGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
* * * * * **
17894766 GCTGACCGAAGTGGCA-TATGCGCAAGCCAGGGATCAGCCCGATCCTCCTTTGCGTGCTGCC-AG
65 GCCGACCGGAGAGGCAGAATGCGCAAGCGA-GGATCAGCCCG-TCC-CCCCTGCGTGCTGCCGA-
* * * *
17894829 TCCCGCTGCAACAACCCTCGATCTG-GCTGGG
126 TCCCGCTGCAACAACCCTCGATCCGATC-CGA
*
17894860 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * * * *
17894925 CCGACCGGAGAGGCAGAATGTGCAAGTCGAGGATCGGCCCAGTCCCCCCGGCGTGCTACCGTTCC
66 CCGACCGGAGAGGCAGAATGCGCAAG-CGAGGATCAGCCC-GTCCCCCCTGCGTGCTGCCGATCC
** * * *
17894990 TACTACTACAACCCTCGATCCGGTCCGA
129 CGCTGCAACAACCCTCGATCCGATCCGA
* *
17895018 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
17895046 TTAGACTAGG
Statistics
Matches: 261, Mismatches: 68, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
156 3 0.01
157 24 0.09
158 209 0.80
159 22 0.08
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCGAGGATCAGCCCGTCCCCCCTGCGTGCTGCCGATCCCG
CTGCAACAACCCTCGATCCGATCCGA
Found at i:17895414 original size:26 final size:26
Alignment explanation
Indices: 17895376--17895428 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17895366 CTGATCTGAT
17895376 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17895402 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17895428 C
1 C
17895429 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17896661 original size:26 final size:26
Alignment explanation
Indices: 17896602--17896662 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
17896592 TGCACCATGG
*
17896602 CTCAAAAT-CTTAGACTGGGAATGAA
1 CTCAATATGCTTAGACTGGGAATGAA
**
17896627 CTCCGTATGCTTAGACAT-GGAATGAA
1 CTCAATATGCTTAGAC-TGGGAATGAA
17896653 CTCAATATGC
1 CTCAATATGC
17896663 CTAAGCTAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 5 0.17
26 23 0.79
27 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (26 bp):
CTCAATATGCTTAGACTGGGAATGAA
Found at i:17897147 original size:26 final size:26
Alignment explanation
Indices: 17897111--17897163 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17897101 CCGGTCTGAT
17897111 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
17897137 CTTAGATTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCATATG
17897163 C
1 C
17897164 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17897990 original size:26 final size:26
Alignment explanation
Indices: 17897939--17897991 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17897929 CCGGTCCGAT
* *
17897939 CTTAGACTGGGAATGGACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17897965 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17897991 C
1 C
17897992 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17898332 original size:26 final size:26
Alignment explanation
Indices: 17898281--17898333 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17898271 CCTATCCGAT
**
17898281 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17898307 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17898333 C
1 C
17898334 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17898694 original size:26 final size:26
Alignment explanation
Indices: 17898643--17898694 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
17898633 TCCAGTCCGA
* *
17898643 TCTTAGACTGGGAATCAATTCTGTAT
1 TCTTAGACTGGGAATCAACTCCGTAT
*
17898669 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATCAACTCCGTAT
17898695 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (26 bp):
TCTTAGACTGGGAATCAACTCCGTAT
Found at i:17898697 original size:182 final size:184
Alignment explanation
Indices: 17898490--17898841 Score: 471
Period size: 182 Copynumber: 1.9 Consensus size: 184
17898480 GATTGGGGCA
* * * * *
17898490 TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTG-TCCAGCT
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCT-CAGCC
*
17898554 GGCCGGAGAGGCAGAATGTGCAAG-CCGAGATCGGCCCGAT-CCCCCTACATGCTGCTAG-TCCT
65 GACCGGAGAGGCAGAATGTGCAAGTCCGAGATCGGCCCGATCCCCCCTACATGCTG-TAGATCCT
*
17898616 GCTGCCACAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATCAATTCTGTATTCT
129 GCTGCCACAACCATCGGTCCGA-TCCGATCTTAGACTGGGAATCAATTCTGTATTCT
* *
17898672 TAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
* ** * * * * *
17898737 ATCGGAGAGGCAGAATGTGCAAGTTGGGGATCGGCTCGGTCCCCCCTGCATGCTGTCGATCCTGC
66 ACCGGAGAGGCAGAATGTGCAAGTCCGAGATCGGCCCGATCCCCCCTACATGCTGTAGATCCTGC
* *
17898802 TGCCATAACCATCGGTCCGATCTGATCTTAGACTGGGAAT
131 TGCCACAACCATCGGTCCGATCCGATCTTAGACTGGGAAT
17898842 GAACTCTATA
Statistics
Matches: 146, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
182 77 0.53
183 14 0.10
184 54 0.37
185 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
ACCGGAGAGGCAGAATGTGCAAGTCCGAGATCGGCCCGATCCCCCCTACATGCTGTAGATCCTGC
TGCCACAACCATCGGTCCGATCCGATCTTAGACTGGGAATCAATTCTGTATTCT
Found at i:17899871 original size:158 final size:157
Alignment explanation
Indices: 17899366--17899919 Score: 526
Period size: 159 Copynumber: 3.5 Consensus size: 157
17899356 AGTCCATATG
* * ** *
17899366 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAATCGAGCGTATGGGCCCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
17899430 CCGGTCGGAGAGGTAGAATGCGCAAGTCAGAGATC-AGTCAGGTCCCCCTGCGTGCTGTCGATCC
65 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCCGATCCCCCTGTGTGCTGTCGATCC
* * * *
17899494 TACTACCACAACCCTTGGTCCAGTCCGAT
129 TGCTGCCACAACCCTCGGTCCAGTTCGAT
* ** * * * *
17899523 CTTAGACTGGGAATGAACTCTGTATGCCTAATTCAACCCATGAAACAAGAGTGCGGGCGA-TGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-ACTCAG
* * * *
17899587 CCGGCCAGAGAGGCATAATGCGCAAGACGGGAATCGGCCCGATCCCCCTCTGTGTGCTGTC-AGT
65 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGAT-CCCC-CTGTGTGCTGTCGA-T
* * * * * **
17899651 CCCGTTGCCACAACCCTCGGTTCGGTTGGGG
127 CCTGCTGCCACAACCCTCGGTCCAGTTCGAT
** * *
17899682 CTTAGACAT-TTAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCAGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCA
* *
17899745 GCCGGCCAGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCTCCCCTATGTGCTGTCGATC
64 GCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATC-CCCCTGTGTGCTGTCGATC
* * *
17899810 CTGCTGTCGCAACCCTCGGTCCAGTTTGAT
128 CTGCTGCCACAACCCTCGGTCCAGTTCGAT
* * ** *
17899840 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
*
17899905 CGACCAGAGAGGCAG
66 CGGCCAGAGAGGCAG
17899920 GTTGTGCAAG
Statistics
Matches: 315, Mismatches: 69, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 82 0.26
158 108 0.34
159 123 0.39
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTGTGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCAGTTCGAT
Found at i:17900842 original size:26 final size:26
Alignment explanation
Indices: 17900813--17900865 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17900803 TCGGTCTGAT
17900813 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGATTGGGAATGAACTTC-GTATG
*
17900839 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
17900865 C
1 C
17900866 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCGTATG
Found at i:17901471 original size:157 final size:156
Alignment explanation
Indices: 17901226--17901709 Score: 515
Period size: 159 Copynumber: 3.1 Consensus size: 156
17901216 GCCTAGACAT
* *
17901226 GGAATGAACTCCGTCTGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAG
** * * *
17901291 AGGCAAAATGCGTAAACCGGGGATCGACTCGTCCCCCCTGTGTGCTGTCGATCCTGCTACCGCAA
66 AGGCAAAATGCACAAACCGGGGATCGGCTCGTCCCCCCTGTGTGCTG-CGATCCTACTGCCGCAA
* * *
17901356 CCCTCGGACCGGTCCGATCTTAGACTG
130 CACTTGGTCCGGTCCGATCTTAGACTG
* * * * *
17901383 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAGCCGA-TCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACT-GGA
* * * * * *
17901447 GAGGCATAATGCACAAACCAGGGATCGGCTCGATCCCCCTCTGCGTGCTGCTGGTCCCACTGCCA
65 GAGGCAAAATGCACAAACCGGGGATCGGCTCG-TCCCCC-CTGTGTGCTGC-GATCCTACTGCCG
* * * **
17901512 CAACTCTTGGTCTGG-CTGGGGCTTAGACAT-
127 CAACACTTGGTCCGGTC-CGATCTTAGAC-TG
* * * *
17901542 GGACTGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCCGACTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAG
* * * * * * * *
17901607 AGACAGAATGCACAAGCTGGGGATTGGCCCGGTCCCCCCTGTGTGCTGCCAATCCTACTGCCGTA
66 AGGCAAAATGCACAAACCGGGGATCGGCTC-GTCCCCCCTGTGTGCTG-CGATCCTACTGCCGCA
*
17901672 ACACTTGGTCCGGTCTGATCTTAGACTG
129 ACACTTGGTCCGGTCCGATCTTAGACTG
17901700 GGAATGAACT
1 GGAATGAACT
17901710 TTGTATGCTT
Statistics
Matches: 263, Mismatches: 53, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 83 0.32
158 55 0.21
159 121 0.46
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAG
AGGCAAAATGCACAAACCGGGGATCGGCTCGTCCCCCCTGTGTGCTGCGATCCTACTGCCGCAAC
ACTTGGTCCGGTCCGATCTTAGACTG
Found at i:17902050 original size:24 final size:24
Alignment explanation
Indices: 17902019--17902070 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
17902009 CCCACCTGCA
17902019 TGCTGCCAATCCTACTACTAGTTC
1 TGCTGCCAATCCTACTACTAGTTC
* *
17902043 TGCTGCCAATCCTACTGCTGGTTC
1 TGCTGCCAATCCTACTACTAGTTC
17902067 TGCT
1 TGCT
17902071 ACCACAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.33, G:0.17, T:0.35
Consensus pattern (24 bp):
TGCTGCCAATCCTACTACTAGTTC
Found at i:17902125 original size:26 final size:26
Alignment explanation
Indices: 17902096--17902145 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17902086 CCGATCCGAT
17902096 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
17902122 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACAGGGAATGAACTCCGTA
17902146 AGCCTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17902598 original size:157 final size:158
Alignment explanation
Indices: 17902122--17902620 Score: 497
Period size: 157 Copynumber: 3.2 Consensus size: 158
17902112 ACTCCGTATG
* * *
17902122 CTTAGACAT-GGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAATGAGTGCGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * *
17902186 CCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCTGGTCCCCCCTGTGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGTGTGCTGTCGATCC
* * *
17902251 TGCTGTCGCAACCCTCGGTCCATTCTGAT
130 TGCTGCCACAACCCTCGGTCCAGTCTGAT
* * * * * * *
17902280 CTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACAAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* * ** ** * *
17902345 CGATC-GAGAGGCA-AATGCGCAAACCAAGGATCGGCCCGGTCCCCCTCTACGTGCTGTTGGTCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT-TGTGTGCTGTCGATCC
** * * *
17902408 CACTGCCACAACCCTCGGT-CTGGCTGAGG
130 TGCTGCCACAACCCTCGGTCCAGTCTGA-T
* * * * * *
17902437 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACAGGCGCCCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * * * *
17902501 TCAACCGGAGAGGAAGAAAGTGCAAGCCGGGGATCGGCCCGGT-CCCCTTGTGTACTGCCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGTGTGCTGTCGATCC
* *
17902565 TGCTGCCACAACCCTCGATCCAGTCCGAT
130 TGCTGCCACAACCCTCGGTCCAGTCTGAT
*
17902594 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
17902621 TTAGAGGGGG
Statistics
Matches: 265, Mismatches: 68, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
156 31 0.12
157 137 0.52
158 75 0.28
159 22 0.08
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGTGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCAGTCTGAT
Found at i:17903143 original size:26 final size:26
Alignment explanation
Indices: 17903114--17903166 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17903104 CCAGTCCGAT
17903114 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17903140 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17903166 C
1 C
17903167 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17903947 original size:26 final size:26
Alignment explanation
Indices: 17903897--17903947 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17903887 AGTCCGATCT
*
17903897 TAGACTAGGAATGAACTCTGCATGCA
1 TAGACTAGGAATGAACTATGCATGCA
* *
17903923 TAGACTATGAATGAACTATGTATGC
1 TAGACTAGGAATGAACTATGCATGC
17903948 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTATGCATGCA
Found at i:17904474 original size:159 final size:158
Alignment explanation
Indices: 17904079--17904524 Score: 465
Period size: 158 Copynumber: 2.8 Consensus size: 158
17904069 CCGATCCGAT
* * * * * *
17904079 CTTAGAC-TGGAAATAAACTC-CATATGCCTAAGTCAACCCATGAAACGAACGTTCAGGCACTGA
1 CTTAGACATGG-AATAAACTCGC-TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACAGA
* * * *
17904142 GCC-AGCCGAAGAGGAATAATACGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTACCGA
64 GCCGA-CAGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTACCGA
* ** *
17904206 TCTCGTTGCCACAACCTCAGTCCGGCTGGGG
128 TCCCACTGCCACAACCTCAGTCCGACTGGGG
* * * *
17904237 CTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCACTGAGC
1 CTTAGACATGGAATAAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACAGAGC
* * * * **
17904302 CGACCGAAAAGGCATAATGCGCAAGCCGGGGATTGACTCGGTCCCCCTCTACGTGCTGTCGATCC
66 CGACAGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTACCGATCC
* *
17904367 CACTGCGACAACCCTCGGTCCGACTGGGG
131 CACTGCCACAA-CCTCAGTCCGACTGGGG
** *
17904396 CTTAGACATGGAATAAACTTCG-TATGCCTAAGCTGACCCACGAAACGAGCGTGCGGGCA-AGAG
1 CTTAGACATGGAATAAAC-TCGCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACAGA-
** * * * *
17904459 GCCGGTAGAAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGAT-CCCCTCTGCGTGCTATCGA
64 GCCGACAGAAGAGGCATAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCTACGTGCTACCGA
17904522 TCC
128 TCC
17904525 TGCTGCTGGT
Statistics
Matches: 242, Mismatches: 39, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
158 136 0.56
159 103 0.43
160 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.17
Consensus pattern (158 bp):
CTTAGACATGGAATAAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACAGAGC
CGACAGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTACCGATCC
CACTGCCACAACCTCAGTCCGACTGGGG
Found at i:17904595 original size:26 final size:26
Alignment explanation
Indices: 17904566--17904618 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17904556 CCAATCCGAT
17904566 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17904592 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17904618 C
1 C
17904619 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17905053 original size:671 final size:672
Alignment explanation
Indices: 17903701--17905060 Score: 1612
Period size: 671 Copynumber: 2.0 Consensus size: 672
17903691 TTCGTGCCAA
* ** *
17903701 GACAACCCTCGGTCTGGTTGGGGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA
1 GACAACCCTCGGTCCGACTGGGGCATAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACA
* ** * * * *
17903766 AAATGAGCATGCAGGTGAGAGGCCGGTCGGAGAGGCAGAATGTACAAGCCGGGGATCGGCCCGAT
66 AAACGAGCATGCAGGCAAGAGGCCGGTAGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGAT
* * * * *
17903831 CCCTCCCTGCGTACTGTCGATCCTGCTGCTGGTCCTGCTATCGCAACCCTCGGTCCAGTCCGATC
131 CCCTCCCTGCGTACTATCGATCCTGCTGCTGGTCCTACCATCGCAACCCTCGATCCAATCCGATC
* *
17903896 TTAGACTAGGAATGAACTCTGCATGCATAGACTATGAATGAACTATGTATGCCTAAGCCAACCCA
196 TTAGACTAGGAATGAACTCCGCATGCATAGACTATGAATGAACTACGTATGCCTAAGCCAACCCA
*
17903961 TGAAATGAGCGCACAGGCGTTCAACCGGCCGAAGAGGCAGAAAGCACCAATCAAGGATCGACCCG
261 TGAAATGAGCGCACAGGCGTTCAACCGACCGAAGAGGCAGAAAGCACCAATCAAGGATCGACCCG
* * * *
17904026 ATCCCCCCTGCGTGTTGTCGATCCTATTGCCGCATCCCTTAGTCCGATCCGATCTTAGACTGGAA
326 ATCCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGAA
*
17904091 ATAAACTCCATATGCCTAAGTCAACCCATGAAACGAACGTTCAGGCACTGAGCCAGCCGAAGAGG
391 ATAAACTCCATATGCCTAAGTCAACCCACGAAACGAACGTTCAGGCACTGAGCCAGCCGAAGAGG
* * * * * *
17904156 AATAATACGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTACCGATCTCGTTGCCACAAC
456 AATAATACACAAGTCAGGGATCGACCCAGTCCCCCTCTACATGCTACCGATCTCGCTACCACAAC
* * * *
17904221 CTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGG
521 CTCAGTCCGGCTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAATGAG
* * * * *
17904286 CGTACGGGCACTGAGCCGACCGAAAAGGCATAATGCGCAAGCCGGGGATTGACTCGGTCCCCCTC
586 CATACGGGCACTGAGCCGACCGAAAAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTC
**
17904351 TACGTGCTGTCGATCCCACTGC
651 TACGTGCTACCGATCCCACTGC
* * ** *
17904373 GACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTTCGTATGCCTAAGCTGACCCACG
1 GACAACCCTCGGTCCGACTGGGGCATAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACA
* * *
17904438 AAACGAGCGTGCGGGCAAGAGGCCGGTAGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGAT
66 AAACGAGCATGCAGGCAAGAGGCCGGTAGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGAT
* * *
17904503 CCC-CTCTGCGTGCTATCGATCCTGCTGCTGGTCCTACCATCGTAACCCTCGATCCAATCCGATC
131 CCCTCCCTGCGTACTATCGATCCTGCTGCTGGTCCTACCATCGCAACCCTCGATCCAATCCGATC
* * * *
17904567 TTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCC
196 TTAGACTAGGAATGAACTCCGCATGCATAGACTAT-GAATGAACTACGTATGCCTAAGCCAACCC
** * * * * * * *
17904631 ATGAAATGAGCGTGCGGGC-TCTCAACCGACCGGAGAGGTAGAATGC-GCAAGTCAGGGA-CTGG
260 ATGAAATGAGCGCACAGGCGT-TCAACCGACCGAAGAGGCAGAAAGCACCAA-TCAAGGATC-GA
* * * * * * *
17904693 CCTGGTCCCCTCTGCATGCTGTCGATCCTACTGCTGCAACCTTTGGTCCGGTCCGATCTTAGACT
322 CCCGATCCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTTAGTCCGATCCGATCTTAGACT
* * * * * **
17904758 GGGAATGAACTCCGTATGCCTAATTCAACCCACGAAATGAGTGTTC-GG-ATGCTGAGCC-GACC
387 GGAAATAAACTCCATATGCCTAAGTCAACCCACGAAACGAACGTTCAGGCA--CTGAGCCAG-CC
* * * * * *
17904820 GAAGAGGGATAATGCACAAGTCAGGGATTGGCCCAGTCCCCCTCTGCATGCTACCGGTCTCGCTA
449 GAAGAGGAATAATACACAAGTCAGGGATCGACCCAGTCCCCCTCTACATGCTACCGATCTCGCTA
* * *
17904885 CCACAACCCTC-GATTCGGTTGGGGCTTAGACATGGAATGAAATCCCTATGTCTAAGCCAACCCA
514 CCACAA-CCTCAG-TCCGGCTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCA
* * * * * * * *
17904949 CAAAATGAGCATGCGGGCTCTTTA-CC-AGTCGAAGAGGTAAAATTCGTAAGCCGAGGATCGACC
577 CAAAATGAGCATACGGGCAC-TGAGCCGA-CCGAAAAGGCAAAATGCGCAAGCCGAGGATCGACC
* * *
17905012 CGGT-CCTCTCTGCGTGCTACCGATCCTACTGTC
640 CGGTCCCCCTCTACGTGCTACCGATCCCACTG-C
* *
17905045 G-TAACCCTCGATCCGA
1 GACAACCCTCGGTCCGA
17905061 TGCAATCTTA
Statistics
Matches: 575, Mismatches: 101, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
669 1 0.00
670 10 0.02
671 349 0.61
672 213 0.37
673 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (672 bp):
GACAACCCTCGGTCCGACTGGGGCATAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACA
AAACGAGCATGCAGGCAAGAGGCCGGTAGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGAT
CCCTCCCTGCGTACTATCGATCCTGCTGCTGGTCCTACCATCGCAACCCTCGATCCAATCCGATC
TTAGACTAGGAATGAACTCCGCATGCATAGACTATGAATGAACTACGTATGCCTAAGCCAACCCA
TGAAATGAGCGCACAGGCGTTCAACCGACCGAAGAGGCAGAAAGCACCAATCAAGGATCGACCCG
ATCCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGAA
ATAAACTCCATATGCCTAAGTCAACCCACGAAACGAACGTTCAGGCACTGAGCCAGCCGAAGAGG
AATAATACACAAGTCAGGGATCGACCCAGTCCCCCTCTACATGCTACCGATCTCGCTACCACAAC
CTCAGTCCGGCTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAATGAG
CATACGGGCACTGAGCCGACCGAAAAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTC
TACGTGCTACCGATCCCACTGC
Found at i:17905096 original size:26 final size:26
Alignment explanation
Indices: 17905067--17905119 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17905057 CCGATGCAAT
17905067 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17905093 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17905119 C
1 C
17905120 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17905472 original size:26 final size:26
Alignment explanation
Indices: 17905436--17905488 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17905426 CCAGTCTGAT
17905436 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17905462 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17905488 C
1 C
17905489 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17905718 original size:356 final size:360
Alignment explanation
Indices: 17904996--17905817 Score: 926
Period size: 356 Copynumber: 2.3 Consensus size: 360
17904986 TAAAATTCGT
* * * * * * ** * * *
17904996 AAGCCGAGGATCGACCCGGTCCTCTCTGCGTGCTACCGATCCTACTGTCGTAACCCTCGATCCGA
1 AAGCCGAGGACCAACCCAGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAATCCGA
* *
17905061 TGCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCCAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCCAAGT
* *
17905126 CAACCCATGAAATGAGCGTGTGGGAGCTCAGCCGACAGGAGAGGCCAGTCGGAAAGGCATAATGC
131 CAACCCATGAAACGAGCGTGCGGGAGCTCAGCC-AC-----AGGCCA--CGGAAAGGCATAATGC
* * *
17905191 GCAAGCCGTGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCCGCTGTCGGTCCTGCTACCA
188 GCAAGCAGTGGATCAGCCCGATCCCCCTCTGCATGCTATCGATCCCGCTGTCAGTCCTGCTACCA
* * * *
17905256 TAACCCTCGGTCCGACTGGGGCTTGGACATGGAATGAACTCTGTACGCCTTGGTCAACCCACGAA
253 CAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCTGTACGCCTAGGTCAACCCACGAA
** *
17905321 ACGAGCGTGTGGGCACTCAGCCAGCCGGAGAGGCAGAATGCGC
318 ACGAGCGTACGGGCACTCAGCCAGCCAGAGAGGCAGAATGCGC
* ** *** * *
17905364 AAGCCGAGGATCGGCTTGGTCCCATCCTACGTGCTGTCGATCCTACTGCCGCAACCTTCAATCC-
1 AAGCCGAGGACCAACCCAGTCCC-CCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAATCCG
* * *
17905428 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAT
65 A-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCCAA
* *
17905493 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-C-C-GG-C-CGGAGAGGCATAATGCGCAAGC
129 GTCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCACAGGCCACGGAAAGGCATAATGCGCAAGC
* * * * *
17905553 TAG-GGATCAGCTCGATCCCCTTCTGCATGCT-GCTGATCTCGCTGTCAGTCCTGCTGCCACAAC
194 -AGTGGATCAGCCCGATCCCCCTCTGCATGCTATC-GATCCCGCTGTCAGTCCTGCTACCACAAC
* * * *
17905616 CCTCGGTCCGGCTGAGGCTTAGACATGGAATGAACT-TCGTATGCCTAAGG-CAACCCATGAAAT
257 CCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCT-GTACGCCT-AGGTCAACCCACGAAAC
* *
17905679 GAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGC
320 GAGCGTACGGGCACTCAGCCAGCCAGAGAGGCAGAATGCGC
* * * * * * *
17905720 AAGCTGGGGACCAACCCAGTCCCCCCTGCTTGTTGTCGATCCTGCTGCCGCAACCCTCGATCCGA
1 AAGCCGAGGACCAACCCAGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAATCCGA
* *
17905785 TCCGATCTTATACTGGGAATGAACTTCGTATGC
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
17905818 CTAAGTCAAC
Statistics
Matches: 386, Mismatches: 61, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
355 65 0.17
356 174 0.45
357 3 0.01
359 1 0.00
360 2 0.01
366 1 0.00
368 21 0.05
369 119 0.31
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (360 bp):
AAGCCGAGGACCAACCCAGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAATCCGA
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCCAAGT
CAACCCATGAAACGAGCGTGCGGGAGCTCAGCCACAGGCCACGGAAAGGCATAATGCGCAAGCAG
TGGATCAGCCCGATCCCCCTCTGCATGCTATCGATCCCGCTGTCAGTCCTGCTACCACAACCCTC
GGTCCGACTGAGGCTTAGACATGGAATGAACTCTGTACGCCTAGGTCAACCCACGAAACGAGCGT
ACGGGCACTCAGCCAGCCAGAGAGGCAGAATGCGC
Found at i:17905971 original size:147 final size:147
Alignment explanation
Indices: 17905704--17905987 Score: 379
Period size: 147 Copynumber: 1.9 Consensus size: 147
17905694 CAGCCGGCCA
* * * * * * *
17905704 GAGAGGCAGAATGCGCAAGCTGGGGACCAACCCAGTCCCCCCTGCTTGTTGTCGATCCTGCTGCC
1 GAGAGGCAGAATGAGCAAGCCGGGGACCAACCCAGTCCCCCCTACGTGCTGTCGATCCTACTACC
* *
17905769 GCAACCCTCGATCCGATCCGATCTTATACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAA
66 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAA
17905834 AACGAGCATCCCAATCG
131 AACGAGCATCCCAATCG
**** *
17905851 GAGAGGCAGAATGAGCAAGCCGGGGATTGGCCCAGTCCCCCCTACGTGCTGTCGATCTTACTACC
1 GAGAGGCAGAATGAGCAAGCCGGGGACCAACCCAGTCCCCCCTACGTGCTGTCGATCCTACTACC
* * ** * **
17905916 GCAACCTTCGATCCGGTTTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
66 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAA
17905981 AACGAGC
131 AACGAGC
17905988 GTACAGGCAC
Statistics
Matches: 116, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
147 116 1.00
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (147 bp):
GAGAGGCAGAATGAGCAAGCCGGGGACCAACCCAGTCCCCCCTACGTGCTGTCGATCCTACTACC
GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAA
AACGAGCATCCCAATCG
Found at i:17906146 original size:26 final size:26
Alignment explanation
Indices: 17906108--17906160 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17906098 TCGGTCTGAT
*
17906108 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17906134 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17906160 C
1 C
17906161 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17906635 original size:26 final size:26
Alignment explanation
Indices: 17906606--17906658 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17906596 CCGATCCAAT
17906606 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17906632 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17906658 C
1 C
17906659 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17907004 original size:26 final size:26
Alignment explanation
Indices: 17906975--17907027 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17906965 TCGATCCGAT
*
17906975 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
17907001 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
17907027 C
1 C
17907028 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:17908225 original size:26 final size:26
Alignment explanation
Indices: 17908174--17908226 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17908164 CTGATCCAAT
*
17908174 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17908200 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17908226 C
1 C
17908227 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17909679 original size:26 final size:26
Alignment explanation
Indices: 17909632--17909682 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17909622 CCGATCCGAT
* *
17909632 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17909658 CTTAGACTAGGG-ATAAACTCCGTAT
1 CTTAGACT-GGGAATAAACTCCGTAT
17909683 TTCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17909856 original size:26 final size:26
Alignment explanation
Indices: 17909827--17909885 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
17909817 CTGGTTCGAT
*
17909827 CTTAAGC-TAGGAATGAACTTCGTATG
1 CTTAAGCAT-GGAATGAACTCCGTATG
17909853 CTT-AGACATGGAATGAACTCCGTATG
1 CTTAAG-CATGGAATGAACTCCGTATG
*
17909879 CCTAAGC
1 CTTAAGC
17909886 CAACCCACGA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
25 2 0.07
26 23 0.82
27 3 0.11
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAAGCATGGAATGAACTCCGTATG
Found at i:17910174 original size:158 final size:148
Alignment explanation
Indices: 17910011--17910363 Score: 393
Period size: 158 Copynumber: 2.3 Consensus size: 148
17910001 CTGGTTTGAT
* *
17910011 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGGGCGTACGGGCACTGAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGGGCGTACGAGCACTCAGT
* * * * *
17910076 CGGCCGGAGAGGTATAATGCGCAAGCCAGGGATTGGCTCGGTCCCCCTCTGTGTGCTGTTGATCC
66 CGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
*
17910141 CGCTACCACAACCCTCAGTCTGG
130 CGCTACCACAA-CC-CA-TAT-G
** * * * * *
17910164 CTGGGTTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCGATGAAACGGGCGTGCGAGCG
1 C-----TTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGGGCGTACGAGCA
* *
17910228 CTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC
60 CTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC
* **
17910293 GATCCTGCTACCGTAACCCATATG
125 GATCCCGCTACCACAACCCATATG
* * *
17910317 CTAAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATG
17910364 AGTGTGCGGG
Statistics
Matches: 165, Mismatches: 28, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
147 1 0.01
148 36 0.22
153 3 0.02
154 2 0.01
155 2 0.01
156 2 0.01
157 23 0.14
158 95 0.58
159 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (148 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGGGCGTACGAGCACTCAGT
CGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCC
GCTACCACAACCCATATG
Found at i:17911050 original size:26 final size:26
Alignment explanation
Indices: 17911012--17911064 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17911002 GGCTCAAAAT
*
17911012 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17911038 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17911064 C
1 C
17911065 CCTAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17911368 original size:159 final size:158
Alignment explanation
Indices: 17911037--17911479 Score: 432
Period size: 159 Copynumber: 2.8 Consensus size: 158
17911027 AACTCTGTAT
* *
17911037 GCTTAGACATGGAATGAACTCCGTATGCCCT-AGCCAAACCATGAAACGAGTGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATG-CCTAAGCC-AACCACGAAACGAGTGTACAGGCGCTCA
* * *
17911101 ACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACTCGGTCTCCCCCTACGTGCTGTCGAT
64 ACCGGCCGGAGAGGCAGAATACGCAAGTCGGGGACCGACTCGATCTCCCCCTACGTGCTGTCCAT
* * *
17911166 GCTACTGCTGCAACCCTGGGTTCGGTCTGG
129 GCTACCGCTGCAACCCTGGGTTCCGACTGG
* * * * * *
17911196 TCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGTGTACAGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAACGAGTGTACAGGCGCTCAA
* * * * *
17911261 CCGGTCGGAGAGGCATAATACGCAAGTCGGGGATCGGCTCGATC-CCCCTCTGCGTGCTG-CCA-
65 CCGGCCGGAGAGGCAGAATACGCAAGTCGGGGACCGACTCGATCTCCCC-CTACGTGCTGTCCAT
* *
17911323 G-TCCCGCTGCAACAAACCTTGG-TCCGACTGGG
129 GCTACCGCTGCAAC---CCTGGGTTCCGACT-GG
* * * * * * *
17911355 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGAGTGTACAGGCGCTCAA
* * * * * * * *
17911420 CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTC-CCCCCTGCGTGCTGTC
65 CCGGCCGGAGAGGCAGAATACGCAAGTCGGGGACCGACTCGATCTCCCCCTACGTGCTGTC
17911480 GATTCTGCTA
Statistics
Matches: 233, Mismatches: 42, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
156 10 0.04
157 1 0.00
158 28 0.12
159 192 0.82
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGTGTACAGGCGCTCAAC
CGGCCGGAGAGGCAGAATACGCAAGTCGGGGACCGACTCGATCTCCCCCTACGTGCTGTCCATGC
TACCGCTGCAACCCTGGGTTCCGACTGG
Found at i:17911550 original size:26 final size:26
Alignment explanation
Indices: 17911514--17911566 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17911504 CTGGTCTGAT
*
17911514 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17911540 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17911566 C
1 C
17911567 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17911833 original size:171 final size:171
Alignment explanation
Indices: 17911552--17912015 Score: 479
Period size: 171 Copynumber: 2.7 Consensus size: 171
17911542 TAGATTGGGG
* * * * * * * *
17911552 ATGAACTCCGTATGCCTAAGTCAACCTATGAAACGACCGTGCGGGCACTCAGCCGACCGAAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTCCGGGCGCTCAGCCGACCGAAAAGG
* * ** ** * * * * *
17911617 CATAATGCATAAGCTAGGGATCAGCTCGGTCCCC-CTCTGCGTGCTACCGATCCTGTTG-TCGGT
66 TAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTC-CTACGTGCTACCGATCCTGCTGCT-GGT
* * * *
17911680 CCTTCTACCACAACCCTCGGTTC-GGCTGGGGCTTAGACATGGA
129 CCTGCTACCACAACCCTCGATCCAGGCT-GAGCTTAGACATGGA
* * *
17911723 ATGAACTCCATATGCCTAAGCCAACCCAAGAAATGAGTGTCCGGGCGCTCAGCCTG-TCGAAAAG
1 ATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTCCGGGCGCTCAGCC-GACCGAAAAG
* *
17911787 GTAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCGTCCCTACGTGCTACCGATCCTACTGCTGGT
65 GTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCT-CCTACGTGCTACCGATCCTGCTGCTGGT
* * *
17911851 CCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACATGGA
129 CCTGCTACCACAACCCTCGATCCAGGCTGAGCTTAGACATGGA
* * * * * *
17911894 ATGAACTCCATATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTCCGGGCGCTCAGCCGACCGAAAAGG
* * **
17911959 TAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCTCCTACGTGCTGTCGATCCTGCT
66 TAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCCTACGTGCTACCGATCCTGCT
17912016 CCCACAACCC
Statistics
Matches: 240, Mismatches: 46, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
170 3 0.01
171 228 0.95
172 9 0.04
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (171 bp):
ATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTCCGGGCGCTCAGCCGACCGAAAAGG
TAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCCTACGTGCTACCGATCCTGCTGCTGGTCC
TGCTACCACAACCCTCGATCCAGGCTGAGCTTAGACATGGA
Found at i:17912139 original size:159 final size:158
Alignment explanation
Indices: 17911850--17912248 Score: 455
Period size: 159 Copynumber: 2.5 Consensus size: 158
17911840 CTACTGCTGG
* * *
17911850 TCCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACAT-GGAATGAACTCCATATGCCTAAG
1 TCCTGCTACCGCAACCCTCGGTCTAGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
* * * * *
17911914 -CTAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGTAAGCTGGGG
65 TC-AACCCACGAAATGAGCGTGAGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGAGG
* * *
17911978 ATCGGCCCGATCCCCTCCTACGTGCTGTCGA
129 ATCGGCCCGATCCCC-CCGACGTGATGCCGA
* * ** * *
17912009 TCCTGCTCCCACAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAATTCCGTATGCCTAGGT
1 TCCTGCTACCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
17912074 CAACCCACGAAATGAGCGTGAGGGTGCTGAGCCGGCCGGA-ATGGCATAATGTGTAAG-TCGAGG
66 CAACCCACGAAATGAGCGTGAGGGTGCTCAGCCGACCGGAGA-GGCAGAATGCGTAAGCT-GAGG
* *
17912137 ATCGGCTCGATCCCCCCGGCGTGATGCCGA
129 ATCGGCCCGATCCCCCCGACGTGATGCCGA
* ** * * *
17912167 TCCTACTGTCGCAACCCTTGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTACCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
*
17912232 CAACCCACAAAATGAGC
66 CAACCCACGAAATGAGC
17912249 ATACAGACGC
Statistics
Matches: 201, Mismatches: 35, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
158 84 0.42
159 116 0.58
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (158 bp):
TCCTGCTACCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAATGAGCGTGAGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGAGGAT
CGGCCCGATCCCCCCGACGTGATGCCGA
Found at i:17912297 original size:158 final size:159
Alignment explanation
Indices: 17911861--17912298 Score: 438
Period size: 158 Copynumber: 2.8 Consensus size: 159
17911851 CCTGCTACCG
* * * *
17911861 CAACCCTCGATCCAGTCTGATCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CTAACCCATG
1 CAACCCTCGGTCTAGTCTGATCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTC-AACCCACG
* * * *
17911924 AAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCGAT
64 AAATGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGAT
* * * *
17911989 CCCCTCCTACGTGCTGTCGATCCTGCTCCCA
129 CCCCTCCGACGTGATGCCGATCCTACTCCCA
** * * *
17912020 CAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAATTCCGTATGCCTAGGTCAACCCACGAA
1 CAACCCTCGGTCTAGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * *
17912085 ATGAGCGTGA-GGGTGCTGAGCCGGCCGGA-ATGGCATAATGTGTAAG-TCGAGGATCGGCTCGA
66 ATGAGCGT-ACGGGTGCTCAGCCGACCGGAGA-GGCAGAATGCGTAAGCTAG-GGATCGGCCCGA
* ** *
17912147 TCCCC-CCGGCGTGATGCCGATCCTACTGTCG
128 TCCCCTCCGACGTGATGCCGATCCTACTCCCA
* * * *
17912178 CAACCCTTGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
1 CAACCCTCGGTCTAGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * ** * * * *
17912243 ATGAGCATACAGACGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCTAGGGATCG
66 ATGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTAGGGATCG
17912299 AACGGGTGGT
Statistics
Matches: 224, Mismatches: 47, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 115 0.51
159 107 0.48
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
CAACCCTCGGTCTAGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ATGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGATCC
CCTCCGACGTGATGCCGATCCTACTCCCA
Found at i:17912933 original size:26 final size:26
Alignment explanation
Indices: 17912895--17912947 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17912885 GGCTCAAACT
17912895 CTTAGACTAGGAATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
*
17912921 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACCCCGTATG
17912947 C
1 C
17912948 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:17913299 original size:26 final size:26
Alignment explanation
Indices: 17913261--17913313 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17913251 TTGGTCCAAT
*
17913261 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17913287 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17913313 C
1 C
17913314 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17914673 original size:26 final size:24
Alignment explanation
Indices: 17914637--17914685 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
17914627 CTAGATCCGA
17914637 TCTGATGTTAGACTGGGAATGAAC
1 TCTGATGTTAGACTGGGAATGAAC
*
17914661 TCTGTATGCTTAGACTGGGGATGAA
1 TCTG-ATG-TTAGACTGGGAATGAA
17914686 TTTCCAATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 3 0.14
26 15 0.68
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.31
Consensus pattern (24 bp):
TCTGATGTTAGACTGGGAATGAAC
Found at i:17915474 original size:26 final size:26
Alignment explanation
Indices: 17915445--17915497 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17915435 CCGATCCGAT
*
17915445 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTACGTATG
17915471 CTTAGACTAGGGATGAACTACGTATG
1 CTTAGACTAGGGATGAACTACGTATG
17915497 C
1 C
17915498 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTACGTATG
Found at i:17915855 original size:26 final size:26
Alignment explanation
Indices: 17915826--17915876 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17915816 CCGGTTTGAT
17915826 CTTAGAC-TAGGAATGAACTCCGTATC
1 CTTAGACAT-GGAATGAACTCCGTATC
17915852 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
17915877 GGCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:17916254 original size:159 final size:160
Alignment explanation
Indices: 17915852--17916346 Score: 416
Period size: 159 Copynumber: 3.1 Consensus size: 160
17915842 ACTCCGTATC
* * *
17915852 CTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * *
17915917 CGGCCGGAGAGGTAGAATGCACAAGCCGGAGA-CCAGCTCGATCCCCCCTTGCGTGCTGTCGATC
66 CGGACGGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGATCCCCCCTTACGTCCTGCCGATC
** *
17915981 CTGCTACCACAACCATCGGTCCAATCTGAT
131 CCACTACCACAACCATCGGTCCAATCTGAG
* * * * * *
17916011 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAATCCATGAAATGAGCGTGTGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
17916075 CC-GACTGGAGAGGCATAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTTTACGTCCTGCCGA
65 CCGGAC-GGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGATCCCCCCTTACGTCCTGCCGA
* * * *
17916138 TCCCACTGCCACAACCCTCGGTTC-AGCT-ACGG
129 TCCCACTACCACAACCATCGGTCCAATCTGA--G
* * * *
17916170 CTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCACAAAATGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
17916235 CGGTCGGAAAGATAGAATGCGTAAACTGGGGATCG-GTCTGAT-CCCCC-TACGTGCTACCGATC
66 CGGACGGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGATCCCCCCTTACGTCCTGCCGATC
** * ** * * * *
17916297 CTGCTGCCGTAACCCTCGGTCCGATCCGAT
131 CCACTACCACAACCATCGGTCCAATCTGAG
17916327 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
17916347 TACATGCTTA
Statistics
Matches: 265, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 49 0.18
158 12 0.05
159 198 0.75
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGACGGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGATCCCCCCTTACGTCCTGCCGATC
CCACTACCACAACCATCGGTCCAATCTGAG
Found at i:17916379 original size:26 final size:26
Alignment explanation
Indices: 17916327--17916379 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17916317 CCGATCCGAT
*
17916327 CTTAGACTGGGAATGAACTCTACATG
1 CTTAGACTGGGAATGAACTCCACATG
*
17916353 CTTAGACTTGGG-ATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCACATG
17916379 C
1 C
17916380 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:17917095 original size:26 final size:26
Alignment explanation
Indices: 17917057--17917109 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17917047 GGCTCAAACT
17917057 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
17917083 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
17917109 C
1 C
17917110 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:17917582 original size:26 final size:26
Alignment explanation
Indices: 17917539--17917590 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17917529 TGGCTCAAAC
17917539 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
* *
17917565 TCTTAGACAT-GGATTGAACTCTGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
17917591 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:17917857 original size:184 final size:183
Alignment explanation
Indices: 17917539--17917934 Score: 562
Period size: 184 Copynumber: 2.2 Consensus size: 183
17917529 TGGCTCAAAC
* *
17917539 TCTTAGACTGGGAATGAACTCCGTATTCTTAGACATGGATTGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
* *
17917604 CATGAAACGAGCGTACGGGTGTTCAACCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATTAGCC
66 CATGAAACGAGCGTACGGGTGCTCAACCGGACGGAGAGGTAGAATGCGCAAGCCGGGGA-TAGCC
* * *
17917669 CGATCCCCCCTGCGTGCTGTTGGTCCTGCTGCCACAACCCTCGGTCCGGTCTGA
130 CGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGA
* * *
17917723 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGTCTATGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
* * * * *
17917788 CATGAAATGAGCGTGA-GGGTGCTCAGCCGGACGGAGAGGTGGAATGCGTAAGTCGGGGA-ACGA
66 CATGAAACGAGCGT-ACGGGTGCTCAACCGGACGGAGAGGTAGAATGCGCAAGCCGGGGATA-G-
* * * *
17917851 CCCGATCCCCCCTGCGTGCTGTCGATCCTGTTGTCGCAACTCTCGGTCCGGTCCGA
128 CCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGA
*
17917907 TCTTAGACTGGGAATGAACTTCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
17917935 CTAAGTCAAC
Statistics
Matches: 188, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
182 1 0.01
183 1 0.01
184 185 0.98
185 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
CATGAAACGAGCGTACGGGTGCTCAACCGGACGGAGAGGTAGAATGCGCAAGCCGGGGATAGCCC
GATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGA
Found at i:17918110 original size:159 final size:158
Alignment explanation
Indices: 17917749--17918111 Score: 374
Period size: 158 Copynumber: 2.3 Consensus size: 158
17917739 AACTCCGTAT
* * * * *
17917749 GCTTAGACATGGAATGAACTCTGTATGTCTATGCCAACCCATGAAATGAGCGTGAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGATACTCAG
** *
17917814 CCGGACGGAGAGGTGGAATGCGTAAGTCGGGGAACGACCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGACGGAGAGGCAGAATGCGTAAGTCGGGGAACGACCCGATCCCCCCTGCATGCTGTCGATCC
*** * * *
17917879 TGTTGTCGCAACTCTCGGTCCGGTCCGA
131 CACTGCCACAACCCTCGGTCCGGTCCGA
* * * ** ** *
17917907 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACATATGAAATGAGCGTTTGGATACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGATACTCA
* * * *
17917971 GTC-GATCGGAGAGGCATAATGCGTAAGTCGGGGATC-AGCTCGATCCCCCTCTGCATGCTGTCG
65 GCCGGA-CGGAGAGGCAGAATGCGTAAGTCGGGGAACGA-CCCGATCCCCC-CTGCATGCTGTCG
* * * *
17918034 GTCCCACTGCCACAACCCTCGGTCTGG-CTGGG
127 ATCCCACTGCCACAACCCTCGGTCCGGTC-CGA
*
17918066 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
17918112 CGGGCATACG
Statistics
Matches: 163, Mismatches: 36, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 88 0.54
159 70 0.43
160 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGATACTCAG
CCGGACGGAGAGGCAGAATGCGTAAGTCGGGGAACGACCCGATCCCCCCTGCATGCTGTCGATCC
CACTGCCACAACCCTCGGTCCGGTCCGA
Found at i:17918266 original size:26 final size:26
Alignment explanation
Indices: 17918225--17918277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17918215 CCGGTCCGAT
*
17918225 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
* *
17918251 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
17918277 C
1 C
17918278 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:17918623 original size:26 final size:26
Alignment explanation
Indices: 17918594--17918644 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17918584 CCGGTTTGAT
17918594 CTTAGACAGGGAATGAACTCCGTATC
1 CTTAGACAGGGAATGAACTCCGTATC
* *
17918620 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACAGGGAATGAACTCCGTAT
17918645 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATC
Found at i:17918918 original size:159 final size:159
Alignment explanation
Indices: 17918629--17918924 Score: 353
Period size: 159 Copynumber: 1.9 Consensus size: 159
17918619 CCTTAGACAT
* * *
17918629 GGAATGAACTCTGTATACCTAAGTCAACCCACGAAAGGAGCATGCGAGCACTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATACCTAAGTCAACCCACGAAAGGAGCATACGAGCACTCAGCCGCTCGGAG
* * * * * * **
17918694 AGGTAGAATGCGCAAGCTAGGGATCGGCCTGATCACCCCCTGCGTGCTGTCAATCTTGCTACCAC
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCACCCCCTGCGTCCTGCCAATCCCGCTACCAC
17918759 AACCCTCGGTCCGATCCAATCTTAGATTG
131 AACCCTCGGTCCGATCCAATCTTAGATTG
* * * * * * *
17918788 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGCCGACT-GGA
1 GGAATGAACTCCGTATACCTAAGTCAACCCACGAAAGGAGCATACGAGCACTCAGCCG-CTCGGA
* * * *
17918852 GAGGCATAATGCGCAAGCCGGGGATCGACCCGGTC-CCCCTCTGCGTCCTGCCAATCCCGCTGCC
65 GAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCACCCC-CTGCGTCCTGCCAATCCCGCTACC
*
17918916 ACAGCCCTC
129 ACAACCCTC
17918925 CCTCTGGCTG
Statistics
Matches: 112, Mismatches: 23, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
158 4 0.04
159 107 0.96
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCGTATACCTAAGTCAACCCACGAAAGGAGCATACGAGCACTCAGCCGCTCGGAG
AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCACCCCCTGCGTCCTGCCAATCCCGCTACCAC
AACCCTCGGTCCGATCCAATCTTAGATTG
Found at i:17918942 original size:159 final size:158
Alignment explanation
Indices: 17918779--17919122 Score: 361
Period size: 159 Copynumber: 2.2 Consensus size: 158
17918769 CCGATCCAAT
* * ** * * *
17918779 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAAC
* * *
17918844 CGA-CTGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTCCTGCCAATC
66 CGATC-GGAGAGGCATAATGCGCAAACCGGGGATCGACCCGGTCCACC-CTACGTCCTGCCAATC
* * *
17918908 CCGCTGCCACAGCCCTCCCTCTGG-CTGGGG
129 CCGCTGCCACAACCCTCCATCTGGTCT-GAG
* * * * * *
17918938 CTTAGACAT-GGAATGAACTCCCTACGCCTTAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAA
* * * **
17919002 CCGATCGGAGAGGCATAATGTGCAAACCGGGGATCGTCCCGGTCCACCCTACGTGCTGCTGATCC
65 CCGATCGGAGAGGCATAATGCGCAAACCGGGGATCGACCCGGTCCACCCTACGTCCTGCCAATCC
* ** * *
17919067 TGCTGCCTTAACCCTCGATCTGGTCTGAT
130 CGCTGCCACAACCCTCCATCTGGTCTGAG
*
17919096 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
17919123 TTAGACTGGG
Statistics
Matches: 149, Mismatches: 32, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.01
158 53 0.36
159 93 0.62
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAAC
CGATCGGAGAGGCATAATGCGCAAACCGGGGATCGACCCGGTCCACCCTACGTCCTGCCAATCCC
GCTGCCACAACCCTCCATCTGGTCTGAG
Found at i:17919132 original size:26 final size:26
Alignment explanation
Indices: 17919096--17919148 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17919086 CTGGTCTGAT
*
17919096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
17919122 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
17919148 C
1 C
17919149 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:17919855 original size:26 final size:26
Alignment explanation
Indices: 17919817--17919869 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17919807 GGCTCAAACT
17919817 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17919843 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17919869 C
1 C
17919870 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17920246 original size:11 final size:11
Alignment explanation
Indices: 17920230--17920259 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
17920220 TAGGCTCTCT
17920230 GACGATGCTCC
1 GACGATGCTCC
17920241 GACGATGCTCC
1 GACGATGCTCC
*
17920252 GGCGATGC
1 GACGATGC
17920260 CCCGGGCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (11 bp):
GACGATGCTCC
Found at i:17920363 original size:26 final size:26
Alignment explanation
Indices: 17920325--17920377 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17920315 GGCTCAAACT
* *
17920325 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
17920351 CTTAGAC-ATGGAATAAACTCCGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
17920377 C
1 C
17920378 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:17925527 original size:26 final size:26
Alignment explanation
Indices: 17925491--17925543 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17925481 CCAGTCTGAT
* *
17925491 CTTAGAATGGGAATGAATTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
17925517 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17925543 C
1 C
17925544 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17927950 original size:25 final size:26
Alignment explanation
Indices: 17927911--17927962 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17927901 GTTGACTTAG
*
17927911 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
*
17927937 GCATAC-AAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
17927962 G
1 G
17927963 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:17929105 original size:158 final size:158
Alignment explanation
Indices: 17928811--17929386 Score: 572
Period size: 158 Copynumber: 3.6 Consensus size: 158
17928801 CCACCTGTTT
* * * * *
17928811 GATCCCC-GACTTGTGCATCCTGCCTCTCTGGTCAGCTAAGCGCCCGCACGCTCGTTTCGTGGGT
1 GATCCCCAG-CTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* ** * * * * **
17928875 TGACAAATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCAGACCGAGGGTTGCAACAGC
65 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGC
***
17928938 AGGATTGACAGCACGCAGGGGGGACCGAACC
129 AGGA-TGACAGCACGCAGGGGGGACCGGGTC
* * * * * * *
17928969 GATCCCCGGCTTACGCGTTCTGCCTCTCCGGCCTGCTGAGCGACCGCATGCCCGTTTCGTGGGTT
1 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * * **
17929034 GGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGTGG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAG
* *
17929098 GACTGACAGCACGCAGAGGGGACTGGGTC
131 GA-TGACAGCACGCAGGGGGGACCGGGTC
* * * * * * *
17929127 GGTCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCGCCCACACGCTCATTTCGTAGGTT
1 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * ***
17929192 GACTTAGGCATATGGAGTTCATTCCCA-ATCTAAG-ATTGGACCAGACCGAGGGTTGCGGCAGCA
66 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCA
** *
17929255 GGATCGACAGCACATAAGGGGGGAGCGGGTC
130 GGAT-GACAGCAC-GCAGGGGGGACCGGGTC
* *
17929286 GATCCCCAGCTTGCTCATTCTGCCTCTCCGG-TAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCA-GCTGAGCGCCCGCACGCTCGTTTCGTGGGT
17929350 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17929387 TACAGAGTTC
Statistics
Matches: 332, Mismatches: 76, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
157 4 0.01
158 229 0.69
159 98 0.30
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAG
GATGACAGCACGCAGGGGGGACCGGGTC
Found at i:17929394 original size:26 final size:26
Alignment explanation
Indices: 17929358--17929410 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17929348 GTTGGCTTAG
*
17929358 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17929384 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17929410 G
1 G
17929411 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17930053 original size:159 final size:158
Alignment explanation
Indices: 17929807--17930255 Score: 492
Period size: 159 Copynumber: 2.8 Consensus size: 158
17929797 TTGTGACAGT
* * * * *
17929807 AGGATCGGTAGCATGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCAATCTGCCTCTTCGGCCG
1 AGGACCGGTAGCACGTAGGGGGGATCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTTC-GCCG
* * * *
17929872 ACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAG
65 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * ** *
17929937 CCCCAG-TCGGACCGAGGGTTGGGGAAGT
130 CACCAGATCGAACCGAGGGTTACGGAAGC
* * * *
17929965 GGGACCGGTAGCACGTAGAGGGGGATCGAGCTGATCCCCAGCTTGCCCATTATGCCTCTTCAGTC
1 AGGACCGGTAGCACGTAG-GGGGGATCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTTC-GCC
* * * * * * * *
17930030 GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTAATTCCCTATTTAA
64 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
17930095 G-ATCAGATCGAACCGAGGGTTACGGCAGC
129 GCACCAGATCGAACCGAGGGTTACGGAAGC
* ** * * *
17930124 AGGATCGACAACACACT-GGGGGGATCGAG-TCGATCCCCGGCTTGCGCATTCTGCCTCTTCGAC
1 AGGACCGGTAGCAC-GTAGGGGGGATCGAGCT-GATCCCCAGCTTGCGCATTCTGCCTCTTCG-C
* *
17930187 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTA
63 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
17930252 AGCA
128 AGCA
17930256 TACGAAGTTC
Statistics
Matches: 236, Mismatches: 49, Indels: 11
0.80 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 112 0.47
159 121 0.51
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGGACCGGTAGCACGTAGGGGGGATCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGCCGG
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAGATCGAACCGAGGGTTACGGAAGC
Done.