Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 158 of 402
Found at i:17930257 original size:26 final size:26
Alignment explanation
Indices: 17930227--17930279 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17930217 GTTGGCTTAG
*
17930227 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17930253 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17930279 G
1 G
17930280 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17931555 original size:316 final size:317
Alignment explanation
Indices: 17930971--17931790 Score: 1077
Period size: 316 Copynumber: 2.6 Consensus size: 317
17930961 CCCAATCTAA
* * *
17930971 GCATAAGGAGCTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * *
17931036 GCACGCAGGGTGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCC
* * ** * * *
17931101 CGTACGCCCGTTTTATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * * ** * *
17931166 GCTGAGGGTTGTGGCAGCGGGACTGGCAGCTCGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCG
196 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGGCTTGCG
*
17931231 CATTATGCCTCTCCGG-TCGGCTCAGCACCCGCACACTCA-TTCATGGGTTGACTTAG
261 CATTATGCCTCTCCGGCT-GGCTCAGCACCCGCACACCCATTTCATGGGTTGACTTAG
* * * * * *
17931287 GCATATGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGGCA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * *
17931352 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGTGCATTTTGCCTCTCCGGTCGGCTGAGTGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCC
**
17931417 CGCACGCTCGTTTCGTGGGTTGGCTTATTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* *
17931482 ACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGGCTTGTG
196 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGGCTTGCG
* * * ** *
17931547 CATTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCCCATTTTGTGGGTTGACTTAT
261 CATTATGCCTCTCCGGCTGGCTCAGCACCCGCACACCCATTTCATGGGTTGACTTAG
* * * *
17931604 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGACA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * *
17931669 GCATGCAGTGGGGGATCAGGCCGATCCCCGACTCGCGCATTCTGTCTCTCTGATCGACTGAGCGC
66 GCACGCAG-GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGC
* *
17931734 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17931791 ATACGGAGTT
Statistics
Matches: 432, Mismatches: 69, Indels: 4
0.86 0.14 0.01
Matches are distributed among these distances:
316 254 0.59
317 78 0.18
318 100 0.23
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (317 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGGCTTGCG
CATTATGCCTCTCCGGCTGGCTCAGCACCCGCACACCCATTTCATGGGTTGACTTAG
Found at i:17931577 original size:159 final size:159
Alignment explanation
Indices: 17931006--17931791 Score: 764
Period size: 159 Copynumber: 5.0 Consensus size: 159
17930996 AGATCGAACT
** * * *
17931006 GGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGTGGACCGGGTCGATCCCTGGCTTGC
1 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGC
* ** * * * * ** *
17931071 GCATTCTGCCTCTTCGACCGGCTGAGTGCCCGTACGCCCGTTTTATGGGTTAGCTTAGGCATAGG
66 GCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
* *
17931136 GAGTTCATTCCATGTCTAAGCCCCAG-TC
131 GAGTTCATTCCATGTCTAAGCACCAGACC
* * * * * * *
17931164 GGGCTGAGGGTTGTGGCAGCGGGA-CTGGCAGCTCGTAGAGGGGGACCGGGTCGATCCCCGGCTT
1 GGACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTT
* * * * * *
17931228 GCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACACTCA-TTCATGGGTTGACTTAGGCATA
64 GCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
* * * *
17931292 TGGAGTTCATTCCCA-GTATAAG-ATCGGACC
129 GGGAGTTCATT-CCATGTCTAAGCACCAGACC
* * * * * * *
17931322 GGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGT
1 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGC
* * * * **
17931387 GCATTTTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTATTCATAGG
66 GCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
*
17931452 GAGTTCATTCCATGTCTAAGCCCCAG-CC
131 GAGTTCATTCCATGTCTAAGCACCAGACC
* ** * * *
17931480 AGACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGGCTTG
1 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTG
* * * * * *
17931545 TGCATTATGCCTCTTCGG-CTGGCTCAGCGCCCGCACGCCCATTTTGTGGGTTGACTTATGCATA
65 CGCATTATGCCTCTTCGGTC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
* *
17931609 CGGAGTTCATTCCCA-GTCTAAG-ATCAGACC
129 GGGAGTTCATT-CCATGTCTAAGCACCAGACC
* * * * * * *
17931639 GGACTGAGGGTTATGGCAGCAGGATCGACAGCATGCAGTGGGGGATCAGGCCGATCCCCGACTCG
1 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTG
* * * *
17931704 CGCATTCTGTCTC-TCTGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
65 CGCATTATGCCTCTTC-GGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
*
17931768 TGGAGTTCATTCCATGTCTAAGCA
129 GGGAGTTCATTCCATGTCTAAGCA
17931792 TACGGAGTTC
Statistics
Matches: 508, Mismatches: 104, Indels: 30
0.79 0.16 0.05
Matches are distributed among these distances:
157 63 0.12
158 168 0.33
159 272 0.54
160 5 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (159 bp):
GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGC
GCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCACCAGACC
Found at i:17931799 original size:26 final size:26
Alignment explanation
Indices: 17931763--17931815 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17931753 GTTGGCTTAG
*
17931763 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17931789 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17931815 G
1 G
17931816 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17931945 original size:189 final size:185
Alignment explanation
Indices: 17931604--17932333 Score: 516
Period size: 189 Copynumber: 4.0 Consensus size: 185
17931594 GTTGACTTAT
* *
17931604 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* *
17931669 GCATGCAGTGGGGGATCAGGCCGATCCCCGACTCGCGCATTCTGTCTCTCTGATCGACTGAGCGC
66 GCATGCAGTGAGGGATCAGGCCGATCCCCGACTCGCGCATTCTGCCTCTCTGATCGACTGAGCGC
* * *
17931734 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
131 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* *
17931789 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGGACCGAGGGTTGCGGCAGTAGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--A---GACCGGACCGAGGGTTACGGCAGCAGGAT
* ** ** * * * * *
17931854 TGGTAGCATGCAG-GAGGGATTGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCTGGTCGGCTG
61 CGACAGCATGCAGTGAGGGATCAGGCCGATCCCCGACTCGCGCATTCTGCCTCTCTGATCGACTG
* * *
17931918 AGCGCCCGTACGCTCGTTTCATGGGTTGGCTTTGGCATACGAAGTTCATTCCATGTCTAA
126 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
** * * * * * * * *
17931978 GC---C----CCCA---CCAGACTGAGGGT-TG--TGG-CAGCA-GG--ACCAGCAGCGGGATCG
1 GCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCGGACCG-AGGGTTA-CGGCAGCAGGATCG
* * * * * * * * * ** *
17932026 GCAGCACGTA-TAGGGGGATCGGGCTGATCCCCGGCTTGCGCA-TCATACCTCTCTGGCCGTCTG
63 ACAGCATGCAGT-GAGGGATCAGGCCGATCCCCGACTCGCGCATTC-TGCCTCTCTGATCGACTG
* * * * * * * *
17932089 AGCGACCGTACGCTCGTTTCATGGGTTGACTTCGACATACGGAGTTCATCCCCA-GTCTAA
126 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAA
* * * * *
17932149 GAATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* ** * * * *** * * * *
17932214 GTACCCAG-G-GGGACCGGGCCAATAATCGACTTGCGCATTTTGCCTCTCTGACCGACTGAGCAC
66 GCATGCAGTGAGGGATCAGGCCGATCCCCGACTCGCGCATTCTGCCTCTCTGATCGACTGAGCGC
* * * * * *
17932277 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAA
131 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
17932332 GC
1 GC
17932334 CCCAGCCGGA
Statistics
Matches: 422, Mismatches: 91, Indels: 66
0.73 0.16 0.11
Matches are distributed among these distances:
170 18 0.04
171 97 0.23
172 6 0.01
174 2 0.00
178 2 0.00
179 6 0.01
180 6 0.01
181 7 0.02
182 5 0.01
183 85 0.20
184 6 0.01
185 47 0.11
186 1 0.00
187 1 0.00
189 98 0.23
190 35 0.08
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
GCATGCAGTGAGGGATCAGGCCGATCCCCGACTCGCGCATTCTGCCTCTCTGATCGACTGAGCGC
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:17932155 original size:26 final size:26
Alignment explanation
Indices: 17932125--17932176 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17932115 TGACTTCGAC
17932125 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
**
17932151 ATACGGAGTTCATTTCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
17932177 TCAGATCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:17932613 original size:158 final size:158
Alignment explanation
Indices: 17932151--17932649 Score: 519
Period size: 159 Copynumber: 3.2 Consensus size: 158
17932141 CAGTCTAAGA
*
17932151 ATACGGAGTTCATTTCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGACAG
1 ATACGGAGTTCA-TTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * *
17932215 TACCCA-GGGGGACCGGGCCAATAATC-GACTTGCGCATTTTGCCTC-TCTGACCGACTGAGCAC
65 CACACAGGGGGGACCGGGTCAAT-CTCTGGCTTGCGCATTATGCCTCTTC-GGCCGACTGAGCGC
17932277 CCACACGCTCGTTTCGTGGGTTGGCTTAGGC
128 CCACACGCTCGTTTCGTGGGTTGGCTTAGGC
* * ** * * * * * **
17932308 ATAGGGAGTTCATTCCATGTTTAAGCCCCAG-CCGGACCGAGGGTTGTGGCTGCGGGACCGGTAG
1 ATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * *
17932372 CACACAGAGGGGGACCGGGTCGATC-CTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGTG-
65 CACACAG-GGGGGACCGGGTCAATCTCT-GGCTTGCGCATTATGCCTCTTCGGCCGACTGAGCGC
* *
17932435 CCAGCACGCTCATTTCGTGGGTTGACTTAGGC
128 CCA-CACGCTCGTTTCGTGGGTTGGCTTAGGC
** * * *
17932467 ATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACTGAGGGTTGCAGCAGCAGGATTGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
** * * * *
17932531 CATGCAGGGGGGATCGGGTCAATCTCTGGCTTGCGCATTCTGCCTCTTCGGTCAACTGAGCGCCC
65 CACACAGGGGGGACCGGGTCAATCTCTGGCTTGCGCATTATGCCTCTTCGGCCGACTGAGCGCCC
17932596 ACACGCTCGTTTCGTGGGTTGGCTTAGGC
130 ACACGCTCGTTTCGTGGGTTGGCTTAGGC
*
17932625 ATACAGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
17932650 CATATGGAGT
Statistics
Matches: 272, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 5 0.02
157 50 0.18
158 96 0.35
159 117 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
ACACAGGGGGGACCGGGTCAATCTCTGGCTTGCGCATTATGCCTCTTCGGCCGACTGAGCGCCCA
CACGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:17933030 original size:26 final size:26
Alignment explanation
Indices: 17933000--17933052 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17932990 GTTGACTTAG
* *
17933000 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
*
17933026 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
17933052 G
1 G
17933053 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTAA
Found at i:17933340 original size:878 final size:858
Alignment explanation
Indices: 17931298--17933556 Score: 2824
Period size: 861 Copynumber: 2.6 Consensus size: 858
17931288 CATATGGAGT
* * * *
17931298 TCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGGGG
1 TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATC-GCAGCACGCAGGGG
* * * * *
17931363 GGACCAGGCCGATCCCCGACTTGTGCATTTTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGT
65 GGACCGGGCCGATCCTCGACTTGTGCATTTTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGT
** *
17931428 TTCGTGGGTTGGCTTATTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
130 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTTG
* * *
17931493 TGGCAGTGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTC
195 TGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTC
* *
17931558 TTCGGCTGGCTCAGCGCCCGCACGCCCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCC
260 TTCGGCCGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCC
* *
17931623 AGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGACAGCATGCAGTGGGGGATCAG
325 AGTCTAAGATCAGACCGGACTGAGGGTTA-CGCAGCAGGATCGACAGCATGCAG-GGGGGATCGG
* * * * * * * *
17931688 GCCGATCCCCGACTCGCGCATTCTGTCTC-TCTGATCGACTGAGCGCCCGCACGCTCATTTCGTG
388 GTCGATCTCTGGCTTGCGCATTCTGCCTCTTC-GGTCGACTGAGCGCCCACACGCTCATTTCGTG
*
17931752 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
452 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * * * ***
17931817 TCGGACCGGACCGGACCGAGGGTTGCGGCAGTAGGATTGGTAGCATGCAGGAGGGATTGGGCCGA
517 TCGGACCGGACCGGAACGAGGGCAGCAGCAGCAGGATCGGTAGCACGAAGGAGGGACCAGGCCGA
* * * *
17931882 TCCCCGGCTTGCGCATTTTGCCTCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGG
582 T-CCCGGCTTACGCATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* * * *
17931947 CTTTGGCATACGAAGTTCATTCCATGTCTAAGCCCCCACCAGACTGAGGGTTGTGGCAGCAGGAC
646 CTTAGGCATACGAAGTTCATTCCATGTCTAAACCCCAACCAGACCGAGGGTTGTGGCAGCAGGAC
* *
17932012 CAGCAGCGGGATCGGCAGCACGTATAGGGGGATCGGGCTGATCCCCGGCTTGCGCATCATACCTC
711 CAGCAGCGGGATCGGCAGCACGTAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATCATACCTC
* *
17932077 TCTGGCCGTCTGAGCGACCGTACGCTCGTTTCATGGGTTGACTTCGACATACGGAGTTCATCCCC
776 TCCGGCCGTCTGAGCGACCGTACGCTCGTTTCATGGGTTGACTTAGACATACGGAGTTCATCCCC
* *
17932142 AGTCTAAGAATACGGAGT
841 AGTCTAAGAATACAGAGC
* * *
17932160 TCATTTCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGCGGCAGTAGGATCGACAGTACCCA-GG
1 TCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGTAGGATCG-CAGCACGCAGGG
* ** * * * * *
17932223 GGGACCGGGCCAATAATCGACTTGCGCATTTTGCCTCT-CTGACCGACTGAGCACCCACACGCTC
64 GGGACCGGGCCGATCCTCGACTTGTGCATTTTGCCTCTCCAG-CCGGCTGAGCGCCCGCACGCTC
* *
17932287 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCCGGACCGAGGGT
128 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGT
* * * * *
17932352 TGTGGCTGCGGGACCGGTAGCACACAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCC
193 TGTGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCC
* * * * *
17932417 TCTCCGGCCGGCTCAGTGCCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
258 TCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTC
** * * *
17932482 CCAGTCTAAGATTGGATCGGACTGAGGGTTGCAGCAGCAGGATTGACAGCATGCAGGGGGGATCG
323 CCAGTCTAAGATCAGACCGGACTGAGGGTTAC-GCAGCAGGATCGACAGCATGCAGGGGGGATCG
* * *
17932547 GGTCAATCTCTGGCTTGCGCATTCTGCCTCTTCGGTCAACTGAGCGCCCACACGCTCGTTTCGTG
387 GGTCGATCTCTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCCACACGCTCATTTCGTG
* *
17932612 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
452 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* *
17932677 TCGGACCGGACC-GAAGGTTGTGACAGCAGCACCAGCAGCAGGATCGGCTA-CACGTAAGG-GGG
517 TCGGACCGGACCGGAACG-AG-G---GCAG---CAGCAGCAGGATCGG-TAGCACG-AAGGAGGG
* *
17932739 ACCAGGTCGAT-CCGAG-TTACGCATTCTACCTCTCCT-GTCGGCTGAGCGCCCGCACGCTTGTT
572 ACCAGGCCGATCCCG-GCTTACGCATTCTACCTCT-CTGGTCGGCTGAGCGCCCGCACGCTCGTT
* * * *
17932801 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAATCGGACCGAGGGTTGT
635 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAACCCCAACCAGACCGAGGGTTGT
* * * * * * * * *
17932866 GGTAGTAGGACCGGCAGCGGGTTTGGTAGCACGTAGAGTGGGA-CTGGGTTGATCTCCGGCTTAC
700 GGCAGCAGGACCAGCAGCGGGATCGGCAGCACGTAGAGGGGGATC-GGGCTGATCCCCGGCTTAC
* *
17932930 GCATTATGCCTCTCCGACCGGCCTCTCCGTCGACTGAGC-ACCCGTACGCTCGTTTCATGGGTTG
764 GCATCATACCTCT----CCGG-----CCGT---CTGAGCGA-CCGTACGCTCGTTTCATGGGTTG
* *
17932994 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGC
816 ACTTAGACATACGGAGTTCATCCCCAGTCTAAGAATACAGAGC
* * * *
17933037 TCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGGAGGGG
1 TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATC-GCAGCACGCAGGGG
*
17933102 GGATCGGGCCGATCCTC-AGCTTGTGCATTTTGCCTCTCCAGCCGGCTGAGCGCCCGCACG-TCC
65 GGACCGGGCCGATCCTCGA-CTTGTGCATTTTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCT-C
*
17933165 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGT
128 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGT
* * * * * *
17933230 TGTGGCAGCGGGACTGGCATCACGCAGAGGGGGATCGAGCCGATCCCCGACTTGTGCATTATGCC
193 TGTGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCC
* * * *
17933295 GT-TTCAGCCGGCTCAGCGCCCGTACGCTCGTTTTGTGGATTGACTTATGCATACGGAGTTCATT
258 -TCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATT
* * *
17933359 CCCAGTCTAAGATCAGACCAGA-TCGAGGGTTACGACAGTAGGATCAACAGCATGCAGGGGGGGA
322 CCCAGTCTAAGATCAGACCGGACT-GAGGGTTACG-CAGCAGGATCGACAGCATGCA-GGGGGGA
* * * *
17933423 TCGGGTCGAT-TCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTACACGCTCATTT
384 TCGGGTCGATCT-CTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCCACACGCTCATTT
* *
17933487 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCTAGTCT
448 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
17933552 AAGAT
513 AAGAT
17933557 TTTTTGCATG
Statistics
Matches: 1192, Mismatches: 163, Indels: 67
0.84 0.11 0.05
Matches are distributed among these distances:
859 3 0.00
860 136 0.11
861 280 0.23
862 51 0.04
864 3 0.00
865 160 0.13
866 3 0.00
867 25 0.02
868 5 0.00
869 3 0.00
874 4 0.00
876 1 0.00
877 121 0.10
878 266 0.22
879 131 0.11
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (858 bp):
TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGCAGCACGCAGGGGG
GACCGGGCCGATCCTCGACTTGTGCATTTTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTTGT
GGCAGCGGGACCGGCAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCT
TCGGCCGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGGACTGAGGGTTACGCAGCAGGATCGACAGCATGCAGGGGGGATCGGGTC
GATCTCTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCCACACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCGGACCGGAACGAGGGCAGCAGCAGCAGGATCGGTAGCACGAAGGAGGGACCAGGCCGATCCC
GGCTTACGCATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
GCATACGAAGTTCATTCCATGTCTAAACCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCAGCA
GCGGGATCGGCAGCACGTAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATCATACCTCTCCGG
CCGTCTGAGCGACCGTACGCTCGTTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCT
AAGAATACAGAGC
Found at i:17933388 original size:159 final size:158
Alignment explanation
Indices: 17933026--17933528 Score: 464
Period size: 159 Copynumber: 3.2 Consensus size: 158
17933016 CCCAGTCTAA
* * *
17933026 GCATACAGAGCTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGCA
* * * * *
17933091 GCACGGAGGGGGGATCGGGCCGATCCTCAGCTTGTGCATTTTGCCTCTCCAGCCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGAGCCGATCCCCAGCTTGTGCATTATGCCTCTCCAGCCGGCTCAGCGCC
* *
17933156 CGCACGTCCGTTTCATGGGTTGGCTTAG
131 CGCACGTCCGTTTCATGGATTGACTTAG
* * ** ** * *
17933184 GCATAGGGAGTTCATT-CCATGTATAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTACGGCAGCAGGATC-A
* *
17933246 GCATCACGCAGAGGGGGATCGAGCCGATCCCC-GACTTGTGCATTATGCCGT-TTCAGCCGGCTC
63 GCAGCACGCAG-GGGGGATCGAGCCGATCCCCAG-CTTGTGCATTATGCC-TCTCCAGCCGGCTC
* ** *
17933309 AGCGCCCGTACG-CTCGTTTTGTGGATTGACTTAT
125 AGCGCCCGCACGTC-CGTTTCATGGATTGACTTAG
* * * *
17933343 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGCA
* * * * ** * * * *
17933408 GCATGCAGGGGGGGATCGGGTCGATTCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCA-GGGGGGATCGAGCCGATCCCCAGCTTGTGCATTATGCCTCTCCAGCCGGCTCAGCGC
** * * * *
17933473 CTACACG-CTCATTTCGTGGGTTGGCTTAG
130 CCGCACGTC-CGTTTCATGGATTGACTTAG
17933502 GCATACGGAGTTCATT-CCACGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17933529 CATACGGAGT
Statistics
Matches: 276, Mismatches: 55, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 59 0.21
159 206 0.75
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGCA
GCACGCAGGGGGGATCGAGCCGATCCCCAGCTTGTGCATTATGCCTCTCCAGCCGGCTCAGCGCC
CGCACGTCCGTTTCATGGATTGACTTAG
Found at i:17933538 original size:26 final size:26
Alignment explanation
Indices: 17933502--17933554 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17933492 GTTGGCTTAG
17933502 GCATACGGAGTTCATTCC-ACGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17933528 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17933554 G
1 G
17933555 ATTTTTTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17934188 original size:159 final size:158
Alignment explanation
Indices: 17933852--17934381 Score: 550
Period size: 159 Copynumber: 3.3 Consensus size: 158
17933842 CTGAGCATTC
*
17933852 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * **
17933917 CCGAGGGTTGCGGCAGCAAGATCAACAGCATGTAGGGGGGACCGAGCCGAT-CCCAGGCTTGCAT
66 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCCCA-GCTTGCGC
* * *
17933981 ATTCTGCCTCTCCGACCGACTGAGCGCCT
130 ATTCTGCCTCTCCGACTGGCTTAGCGCCT
* * * * **
17934010 GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCG
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCG
* * * * *** * *
17934073 GACCGAGGGTTGTGGTAGCGGGATCGACAGCACATAGAAAAGGATTGAGCCGATCCCCAGCTTGT
64 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG-GGGGGATCGAGCCGATCCCCAGCTTGC
*
17934138 GCATTATGCCTCTCCGACTGGCTTAGCGCCT
128 GCATTCTGCCTCTCCGACTGGCTTAGCGCCT
* * * * *
17934169 GCACGCTCGTTTCGTGGGTTGACTTAAGCATATGGAGTTTATTCCCAGTCTAAGATCGGACCAGA
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * ***
17934234 CCGAGGGTTGCAGCAACAGGATCGACAGCACGTAGGGGGGGATCGGGTCGGTCCTTGGCTTGCGC
66 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA-GGGGGGATCGAGCCGATCCCCAGCTTGCGC
* * * *
17934299 ATTCTGCCTCTCCG-GTCGATTGAGCGCCC
130 ATTCTGCCTCTCCGACTGGCTT-AGCGCCT
*
17934328 GCACGCTCGTTTCGTGGGTT-AGCTTAGGCATACGGAGTTTATT-CCATGTCTAAG
1 GCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
17934382 CATACGGAGT
Statistics
Matches: 302, Mismatches: 60, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 88 0.29
159 203 0.67
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCCCAGCTTGCGCA
TTCTGCCTCTCCGACTGGCTTAGCGCCT
Found at i:17934406 original size:26 final size:26
Alignment explanation
Indices: 17934355--17934407 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17934345 GTTAGCTTAG
* *
17934355 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
17934381 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
17934407 G
1 G
17934408 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17934587 original size:26 final size:26
Alignment explanation
Indices: 17934551--17934604 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
17934541 GTTGACTTAG
*
17934551 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17934577 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17934603 GC
1 GC
17934605 TCGAACCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17935049 original size:26 final size:26
Alignment explanation
Indices: 17935020--17935072 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17935010 GTTGGCTTAG
*
17935020 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17935046 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17935072 G
1 G
17935073 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17935258 original size:26 final size:26
Alignment explanation
Indices: 17935228--17935279 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17935218 GTTGACTTAG
17935228 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17935254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17935280 ACAGCACGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17935933 original size:26 final size:26
Alignment explanation
Indices: 17935897--17935949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17935887 GTTGACTTAG
17935897 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17935923 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17935949 G
1 G
17935950 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17936225 original size:159 final size:159
Alignment explanation
Indices: 17935978--17936426 Score: 491
Period size: 159 Copynumber: 2.8 Consensus size: 159
17935968 TTATGTCAGT
* * * *
17935978 AGGATCGACA-CACGCAG-GGGGGATCGGGTCGATCCCCTGCTTGCGCATTCTGCCTCACC-AGC
1 AGGATCGACAGCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-T
* * * *
17936040 CGGCTGAGCGCCCACATGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
65 CGGCT-AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* **
17936105 AGCCCCAG-TCGAACCAAGGGTTGTGGTAGC
129 AGCACCAGATCGAACCAAGGGTTGTGACAGC
* * * *
17936135 GGGATCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTGGCGCATTATGCCTCTCCGATC
1 AGGATCGACAGCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
* * *
17936200 GGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTA
66 GGCT-AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* * * *
17936264 AG-ATCAGATCGGACCGAGGGTTTTGACAGC
129 AGCACCAGATCGAACCAAGGGTTGTGACAGC
* * * * * *
17936294 AGGATCGACAGCACACATAGAGGGA-CTAGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGT
1 AGGATCGACAGCACGCAGAGGGGGATCGA-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * * *
17936358 CAG-TTGTACGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCT
65 CGGCTAGT--GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
17936422 AAGCA
128 AAGCA
17936427 TACGGAGTTA
Statistics
Matches: 243, Mismatches: 39, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
157 11 0.05
158 16 0.07
159 211 0.87
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGATCGACAGCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
GGCTAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CACCAGATCGAACCAAGGGTTGTGACAGC
Found at i:17936448 original size:26 final size:26
Alignment explanation
Indices: 17936400--17936450 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17936390 TGGCTTAGGT
* *
17936400 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTAATTCCATATCTAAGC
17936426 ATACGGAGTTAATTCCCA-ATCTAAG
1 ATACGGAGTTAATT-CCATATCTAAG
17936451 ATCAGATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTAATTCCATATCTAAGC
Found at i:17936814 original size:26 final size:26
Alignment explanation
Indices: 17936778--17936832 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
17936768 GTTGACTTAG
17936778 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17936804 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17936830 GCA
1 GCA
17936833 GCACATAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17937327 original size:26 final size:26
Alignment explanation
Indices: 17937290--17937342 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17937280 GTTGACTTAG
17937290 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17937316 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
17937342 G
1 G
17937343 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17937491 original size:26 final size:26
Alignment explanation
Indices: 17937455--17937505 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17937445 TGGCTTAGGG
17937455 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
17937481 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17937506 AGTTTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:17938440 original size:158 final size:158
Alignment explanation
Indices: 17938151--17938763 Score: 551
Period size: 158 Copynumber: 3.9 Consensus size: 158
17938141 GAGCCGGACC
* * * * * * *
17938151 GAGGGTTGTGGCAGCGGGATCGGCAGCATGCAGAGGGGGATCGGGCCGATCCCTGGCTTGTGCAT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * ** * * *
17938216 TATGCCTCTTCGGATAGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGT
66 TATGCCTC-TCCGATCGGTCAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
*
17938281 TCATTCCTAGTCTAAGATCGGACCAGACT
130 TCATTCCTAGTCTAAGATCGAACCAGACT
*
17938310 GAGGGTTGCAGCAGCAGGATCGACAGCACGCAGA-GGGGACCGGGCCGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * *
17938374 TCTACCTCTCCGATCGGTCGAGCACCCGCATGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGT
66 TATGCCTCTCCGATCGGTC-AGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* ** * * *
17938439 TCATTCC-ATGTCTAGGCCCCAGCCGGA-T
130 TCATTCCTA-GTCTAAGATCGAACCAGACT
* * * * * * * *
17938467 CGAGGGTTGTGGCAGCAGGA-CCAGCAGCATGCAGAGGGGGACTGGGCAGATCCTCGACTTACGC
1 -GAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGC
** *
17938531 ATTATGCCTCTCCGA-CTGGCTCAGTGCCCGCATGCTCGTTTTATGGGTTGACTTAGGCATACGG
64 ATTATGCCTCTCCGATC-GG-TCAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGG
* *
17938595 AGTTCATTCCCAGTGTAAGATCGAACCAGAAC-
127 AGTTCATTCCTAGTCTAAGATCGAACCAG-ACT
* * * * ** * * *
17938627 AAGGGTTGCGGTAGCAGGATCGATAGTACTTAG-GGGGTGATCAGGCCGGT-CCCGGCTTGCGCA
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG-GACCGGGCCGATCCCCGGCTTGCGCA
* * ** * * * *
17938690 TTCTGCCTCTTCGGCCGGCTAAGCACCCGCAAGCTCGTTTCGTGGGTT-AGCTTAGGCATACGAA
65 TTATGCCTCTCCGATCGG-TCAGCACCCGCATGCTCGTTTCATGGGTTGA-CTTAGGCATACGGA
17938754 GTTCATTCCT
128 GTTCATTCCT
17938764 TTCTAAGCAT
Statistics
Matches: 363, Mismatches: 77, Indels: 29
0.77 0.16 0.06
Matches are distributed among these distances:
157 13 0.04
158 191 0.53
159 153 0.42
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
TATGCCTCTCCGATCGGTCAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCCTAGTCTAAGATCGAACCAGACT
Found at i:17938717 original size:317 final size:317
Alignment explanation
Indices: 17938142--17938762 Score: 788
Period size: 317 Copynumber: 2.0 Consensus size: 317
17938132 TGGTCGACTG
* * * * *
17938142 AGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCATGCAGAGGGGGATCGGGCCGATCCCTGG
1 AGCCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCATGCAGAGGGGGATCGGGCAGATCCCTGA
** * *
17938207 CTTGTGCATTATGCCTCTTCGGATAGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
66 CTTACGCATTATGCCTCTTCCGATAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * *
17938272 ATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGATCGACAGC
131 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTAAGGGTTGCAGCAGCAGGATCGACAGC
* * *
17938337 ACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGTCGAGCACCCG
196 ACGCAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGTCAAGCACCCG
* * *
17938402 CATGCCCGTTTCATGGGTT-GACTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCC
261 CAAGCCCGTTTCATGGGTTAG-CTTAGGCATACGAAGTTCATTCCATGTCTAGGCCCC
*
17938459 AGCCGGATCGAGGGTTGTGGCAGCAGGACCAGCAGCATGCAGAGGGGGA-CTGGGCAGAT-CCTC
1 AGCCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCATGCAGAGGGGGATC-GGGCAGATCCCT-
* * *
17938522 GACTTACGCATTATGCCTC-TCCGACTGGCTCAGTGCCCGCATGCTCGTTTTATGGGTTGACTTA
64 GACTTACGCATTATGCCTCTTCCGA-TAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * *
17938586 GGCATACGGAGTTCATTCCCAGTGTAAGATCGAACCAGAAC-AAGGGTTGCGGTAGCAGGATCGA
128 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTAAGGGTTGCAGCAGCAGGATCGA
* * ** * * * * * *
17938650 TAGTACTTAGGGGGTGATCAGGCCGGT-CCCGGCTTGCGCATTCTGCCTCTTCGGCCGG-CTAAG
192 CAGCACGCAGAGGG-GACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGTC-AAG
* *
17938713 CACCCGCAAGCTCGTTTCGTGGGTTAGCTTAGGCATACGAAGTTCATTCC
255 CACCCGCAAGCCCGTTTCATGGGTTAGCTTAGGCATACGAAGTTCATTCC
17938763 TTTCTAAGCA
Statistics
Matches: 259, Mismatches: 38, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
316 9 0.03
317 238 0.92
318 12 0.05
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (317 bp):
AGCCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCATGCAGAGGGGGATCGGGCAGATCCCTGA
CTTACGCATTATGCCTCTTCCGATAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTAAGGGTTGCAGCAGCAGGATCGACAGC
ACGCAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGTCAAGCACCCG
CAAGCCCGTTTCATGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAGGCCCC
Found at i:17938977 original size:26 final size:26
Alignment explanation
Indices: 17938940--17938992 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17938930 GTTGACTTAG
17938940 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
17938966 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17938992 G
1 G
17938993 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17940025 original size:25 final size:26
Alignment explanation
Indices: 17939996--17940047 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17939986 GTTGACTTAG
17939996 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17940021 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17940047 G
1 G
17940048 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17940523 original size:26 final size:26
Alignment explanation
Indices: 17940494--17940546 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17940484 GTTGGCTTAG
*
17940494 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATAAGAAGTTCATTCCCA-GTCTAA
*
17940520 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
17940546 G
1 G
17940547 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:17940720 original size:26 final size:26
Alignment explanation
Indices: 17940690--17940742 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17940680 GTTGGCTTAG
17940690 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
**
17940716 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17940742 G
1 G
17940743 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17940720 original size:196 final size:195
Alignment explanation
Indices: 17940425--17940913 Score: 536
Period size: 196 Copynumber: 2.5 Consensus size: 195
17940415 CCAGGTCGGC
* * * * * **
17940425 CCCCGGCTTGCGCATTCTGCCTCTCCAGG-TAGTTGAGTGCCCGTACGTTCAATTCGTGGGTTGG
1 CCCCGACTTACGCATTCTGCCTCTCC-GGCTAGCTGAATGCCCGTACGCTCGTTTCGTGGGTTGG
17940489 CTTAGGCATACGAAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGAC
65 CTTAGGCATACG-AGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * * *
17940554 TGGATCGAGGGTTGCGACAGTAGGACCAGTAGCAGGATCGACAGCACGCAGGGGGGACCGGACCG
129 TGGACCCAAGGTTACGACAGCAAGACCAGCAGCAGGATCGACAGCACACAAGGGGGACCGGACCG
17940619 AGT
194 A-T
* * * *
17940622 -GCCGATTTACGCATTCTGCCTCTCCGGCTAACTGAATGCCCGTACGCTCGTTTCATGGGTTGGC
1 CCCCGACTTACGCATTCTGCCTCTCCGGCTAGCTGAATGCCCGTACGCTCGTTTCGTGGGTTGGC
* * * *
17940686 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGATT
66 TTAGGCATAC-GAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACT
** * * * *
17940751 GGACCCAAGGTTACGGTAGCAAGACCAGCAGCAGGATTGGCAGCACACAAGGGGGACCGGGCTGA
130 GGACCCAAGGTTACGACAGCAAGACCAGCAGCAGGATCGACAGCACACAAGGGGGACCGGACCGA
17940816 T
195 T
* * * * ** * *
17940817 CCCCGACTTGCACATTCTGCCTCTACAGCCGGCTG-A-GCACCTGCATGCTCGTTTCGTGGGTTG
1 CCCCGACTTACGCATTCTGCCTCTCCGGCTAGCTGAATGC-CC-GTACGCTCGTTTCGTGGGTTG
*
17940880 GCTTAGGCATACGGACTTCATTCCATGTCTAAGC
64 GCTTAGGCATAC-GAGTTCATTCCATGTCTAAGC
17940914 CCCAGCTAGA
Statistics
Matches: 243, Mismatches: 44, Indels: 11
0.82 0.15 0.04
Matches are distributed among these distances:
194 2 0.01
195 6 0.02
196 234 0.96
197 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (195 bp):
CCCCGACTTACGCATTCTGCCTCTCCGGCTAGCTGAATGCCCGTACGCTCGTTTCGTGGGTTGGC
TTAGGCATACGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACTG
GACCCAAGGTTACGACAGCAAGACCAGCAGCAGGATCGACAGCACACAAGGGGGACCGGACCGAT
Found at i:17941596 original size:26 final size:26
Alignment explanation
Indices: 17941566--17941621 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
17941556 TGGGTTGGCT
17941566 TAAGCATACAGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
*
17941592 TAAGCATTCAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17941618 TAAG
1 TAAG
17941622 ATTGGATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17941974 original size:26 final size:26
Alignment explanation
Indices: 17941924--17941976 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17941914 GTTGGCTTAG
*
17941924 GCATACAAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATATCTAA
*
17941950 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAAAGTTCATT-CCATATCTAA
17941976 G
1 G
17941977 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATATCTAA
Found at i:17942004 original size:355 final size:352
Alignment explanation
Indices: 17941327--17942005 Score: 861
Period size: 355 Copynumber: 1.9 Consensus size: 352
17941317 AGCATACAGA
* *
17941327 GGGGGACCGACTCGATCCTGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCGCCCAATGCTTG
1 GGGGGACCGACTCGATCCTGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCAATGCTCG
* * * * *
17941392 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAATATTAGACTGAACTGAGGGTT
66 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
* * ** * **
17941457 GCGATAGTAGGATCGACAGTACATAGTGGGGGACTGGGATGGTCCCCGGCTTGTGCATTCTGCCT
131 GCGATAGCAGGATCGACAGCACATA-TGGGGGACTAAGATGATCCCCGGCTTACGCATTCTGCCT
* *
17941522 CTCCGGCCAGCTGAGTGCCCCCACACTCGTTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCC
195 CTCCGGCCAGCTGAGTGCCCCCACACTCATTTCATGGGTTGGCTTAAGCATACAAAGTTCATTCC
* * ** * *
17941587 ATGTCTAAGCATTCAGAGTTCATTCCCAGTCTAAGATTGGATCGAACTGATGGTTGCGGTAGCAA
260 ATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAACTGAGGGTTACGGTAGCAA
17941652 AACCAGCAGTAGGATCGATAGCACGTAG
325 AACCAGCAGTAGGATCGATAGCACGTAG
* * * *
17941680 GGGGGACCGGGCT-GATCCTCGACTTGCGCATTATGCCTCTTCGATCGGTTCAGCACCC-GTGCG
1 GGGGGACC-GACTCGATCCT-GACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCAAT--G
*
17941743 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAA-TCGA
62 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GA
* *
17941807 GGGTTGCGGTAGCAGGATCGACAGCACAT-TGGAGGGA-TCAAG-TCGATCCTCGGCTTACGCAT
126 GGGTTGCGATAGCAGGATCGACAGCACATATGG-GGGACT-AAGAT-GATCCCCGGCTTACGCAT
* * * ** * * *
17941869 TCTGCCTCTCCAGTC-GACTGAGTGCCCCGTATGCTTATTTCGTGGGTTGGCTTAGGCATACAAA
188 TCTGCCTCTCCGGCCAG-CTGAGTGCCCC-CACACTCATTTCATGGGTTGGCTTAAGCATACAAA
17941933 GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAA-TCGAGGGTT
251 GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAACT-GAGGGTT
17941997 ACGGTAGCA
315 ACGGTAGCA
17942006 GGATCGGTAG
Statistics
Matches: 278, Mismatches: 37, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
353 21 0.08
354 83 0.30
355 174 0.63
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (352 bp):
GGGGGACCGACTCGATCCTGACTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCAATGCTCG
TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
GCGATAGCAGGATCGACAGCACATATGGGGGACTAAGATGATCCCCGGCTTACGCATTCTGCCTC
TCCGGCCAGCTGAGTGCCCCCACACTCATTTCATGGGTTGGCTTAAGCATACAAAGTTCATTCCA
TGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAACTGAGGGTTACGGTAGCAAA
ACCAGCAGTAGGATCGATAGCACGTAG
Found at i:17942260 original size:26 final size:26
Alignment explanation
Indices: 17942230--17942282 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17942220 GTTGACTTAG
*
17942230 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
*
17942256 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
17942282 G
1 G
17942283 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:17942623 original size:26 final size:26
Alignment explanation
Indices: 17942576--17942625 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17942566 GGCTTAGGCA
*
17942576 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATATCTAAGCG
17942602 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
17942626 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCG
Found at i:17947458 original size:26 final size:26
Alignment explanation
Indices: 17947429--17947481 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17947419 GGTTGGTTAG
* *
17947429 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
17947455 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17947481 G
1 G
17947482 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17948650 original size:26 final size:26
Alignment explanation
Indices: 17948614--17948666 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17948604 GTTGACTTAG
17948614 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17948640 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17948666 G
1 G
17948667 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17948948 original size:159 final size:157
Alignment explanation
Indices: 17948636--17949141 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 157
17948626 CATCCCCAGT
* * * *
17948636 CTAA-GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTATGGCAGCAGGAT
1 CTAAGGCATACGGAGTTCATT-CCAGTCTAAGACCAGACCAGAGCGAGGGCTATGGCAGCAGGAT
* * * * * * *
17948700 CGGTAGCACGTAGGGTGGACCGGGTCGATCCCCGGTTTGCACATTATGCCTCTCCGGCCGGTTGA
65 CGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCAGCCGGCTCA
* *
17948765 GCACCCGCACGCCCGTTTCGTGGGTTGA
130 GCACCCGCACGCCCATTTCATGGGTTGA
* * * *
17948793 CTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGAGGGAGGGCTATGGCAGCGGGA
1 CTAAGGCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCAGAGCGAGGGCTATGGCAGCAGGA
* * *
17948857 TCGATAGGACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCT
64 TCGATAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCAGCCGGCT
* *
17948922 CAGCGCCCGCACGCTCATTTCATGGGTTGA
128 CAGCACCCGCACGCCCATTTCATGGGTTGA
* * * * * * * * * *
17948952 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATC-GACCGAGGGTTGTGGTAGCAAGAT
1 CTAAGGCATACGGAGTTCATT-CCAGTCTAAGACCAGACCAGAGCGAGGGCTATGGCAGCAGGAT
* * * * * ** * * * *
17949016 CAACAGCACACAGGGGGTTATCGGGTCGATCCCTAGCTTGCGCATTCTACCTCTCC-GACCGGTT
65 CGATAGCACGCAGGGGG-GACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCAG-CCGGCT
* * * * *
17949080 GAACGCCCGCACGCTCC-TTTCGTGGGTTGG
128 CAGCACCCGCACGC-CCATTTCATGGGTTGA
* *
17949110 CTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 CTAAGGCATACGGAGTTCATTCCA-GTCTAAG
17949142 GATACGGAGT
Statistics
Matches: 284, Mismatches: 55, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
157 15 0.05
158 167 0.59
159 99 0.35
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CTAAGGCATACGGAGTTCATTCCAGTCTAAGACCAGACCAGAGCGAGGGCTATGGCAGCAGGATC
GATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCAGCCGGCTCAG
CACCCGCACGCCCATTTCATGGGTTGA
Found at i:17949153 original size:26 final size:26
Alignment explanation
Indices: 17949117--17949167 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17949107 TGGCTTAGGC
17949117 ATACAGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
*
17949143 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17949168 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:17949511 original size:26 final size:26
Alignment explanation
Indices: 17949482--17949534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17949472 GTTGACTTAG
*
17949482 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17949508 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17949534 G
1 G
17949535 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17950651 original size:159 final size:158
Alignment explanation
Indices: 17950400--17950692 Score: 383
Period size: 159 Copynumber: 1.8 Consensus size: 158
17950390 AAGGGTTGCA
* * * *
17950400 GTAGCAGGATCGACAGCACCCAAGGGGGACCAGGCCGATCCCCGACTTGTGCATTCTTCCTCTCC
1 GTAGCAGGACCGACAGCACCCAAGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCA
* ***
17950465 GACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATGGGGAGTTCATTCCATGT
66 GACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGT
17950530 CTAATCCCGAGCCAGACTGAGGGTTATG
131 CTAATCCCGAGCCAGACTGAGGGTTATG
* * ** *
17950558 GTAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCCC-AGCTTGCGCATTCTGCCTCT
1 GTAGCAGGACCGACAGCACCCA-AGGGGGACCAGGCCGATCCCCGA-CTTGCGCATTCTGCCTCT
* * * * *
17950622 CTAG-CCGGCTGAGCTCCCGTACGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCA
64 C-AGACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCA
17950686 TGTCTAA
128 TGTCTAA
17950693 GCATACGTAG
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
158 20 0.18
159 93 0.82
160 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23
Consensus pattern (158 bp):
GTAGCAGGACCGACAGCACCCAAGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCA
GACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGT
CTAATCCCGAGCCAGACTGAGGGTTATG
Found at i:17950704 original size:26 final size:26
Alignment explanation
Indices: 17950667--17950719 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17950657 GTTAGCTTAG
17950667 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17950693 GCATAC-GTAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
17950719 G
1 G
17950720 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17951791 original size:159 final size:159
Alignment explanation
Indices: 17951614--17951906 Score: 352
Period size: 159 Copynumber: 1.8 Consensus size: 159
17951604 CCGAACCGAG
* ** * * * * *
17951614 GGTTGTGGCAGCAAGATCGGTAGGACGTAGAGGGCGACCGGGTCGATCCTCGAATTGTGCATTAT
1 GGTTGCGGCAGCAAGATCGACAGCACGCAAAGGGCGACCGGGCCGATCCCCGAATTGTGCATTAT
* * * *
17951679 GCCTCTCCAGTCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCA
66 ACCCCTCCAGTCGGCTAAGCACCCACACGCTCATTTCATGGGTTGACTTAGCCATACGAAGTTCA
17951744 TTCCCAGTCTAAGATCGGATTAGATCGAT
131 TTCCCAGTCTAAGATCGGATTAGATCGAT
* * * * ** *
17951773 GGTTGCGGTAGCAGGATCGACAGCACGCAAAGGGGGACCGGGCCGGTCCCCGGCTTGTGCATTCT
1 GGTTGCGGCAGCAAGATCGACAGCACGCAAAGGGCGACCGGGCCGATCCCCGAATTGTGCATTAT
* * * * * * *
17951838 ACCCCTTCGGTCGGTTAAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGGAGTTCA
66 ACCCCTCCAGTCGGCTAAGCACCCACACGCTCATTTCATGGGTTGACTTAGCCATACGAAGTTCA
17951903 TTCC
131 TTCC
17951907 ATGGCTAAGG
Statistics
Matches: 108, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
159 108 1.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GGTTGCGGCAGCAAGATCGACAGCACGCAAAGGGCGACCGGGCCGATCCCCGAATTGTGCATTAT
ACCCCTCCAGTCGGCTAAGCACCCACACGCTCATTTCATGGGTTGACTTAGCCATACGAAGTTCA
TTCCCAGTCTAAGATCGGATTAGATCGAT
Found at i:17952307 original size:26 final size:26
Alignment explanation
Indices: 17952270--17952322 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17952260 GTTGACTTAG
*
17952270 GCATACGTAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17952296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17952322 G
1 G
17952323 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17952821 original size:26 final size:26
Alignment explanation
Indices: 17952771--17952823 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17952761 GTTGGCTTAG
*
17952771 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
17952797 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17952823 G
1 G
17952824 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17954897 original size:26 final size:26
Alignment explanation
Indices: 17954868--17954920 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17954858 GTTGGCCTAG
17954868 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
17954894 GCATACGGGGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17954920 G
1 G
17954921 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17955955 original size:159 final size:157
Alignment explanation
Indices: 17955567--17955956 Score: 426
Period size: 159 Copynumber: 2.5 Consensus size: 157
17955557 GAACGTCTGT
*
17955567 ATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACG
1 ATGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACG
* * * * *
17955632 AAGGGATGTGACAGTAGGATCGGCATCACGCAGGGGGGATCAAGCCGATCCTCGACTTACACATT
66 -AGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCAAGCCGATCCCCGACTTACACATT
* * *
17955697 ATGCCTTTCCGGCCGGCTCAGCACCCTC
130 ATACCTCTCCGGCCGGCTCAGCACCCGC
** * * **
17955725 ACACTCATTTTATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATTGGACCAGACT
1 ATGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-
** * ** * * **
17955790 GAGGGTTGTGGTAGCAGGATTGACAGCACGCAGGAGGGGA-CTGGGCTGATCCCCGGCTTATGCA
65 GAGGGTTGTGACAGCAGGATCGACAGCACGCAGG-GGGGATC-AAGCCGATCCCCGACTTACACA
* * *
17955854 TTCTACCTCTCCGGTCGGCTGAGCACCCGC
128 TTATACCTCTCCGGCCGGCTCAGCACCCGC
* * *
17955884 ATGCTCGTTTCATGGGTT-AGCTTAGGTATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGA
1 ATGCTCGTTTTATGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGA
17955947 TCGAGGGTTG
64 -CGAGGGTTG
17955957 CTGTAGTAGG
Statistics
Matches: 190, Mismatches: 36, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
158 88 0.46
159 101 0.53
160 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (157 bp):
ATGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACG
AGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCAAGCCGATCCCCGACTTACACATTA
TACCTCTCCGGCCGGCTCAGCACCCGC
Found at i:17956179 original size:154 final size:154
Alignment explanation
Indices: 17955886--17956180 Score: 328
Period size: 154 Copynumber: 1.9 Consensus size: 154
17955876 GCACCCGCAT
* * * *
17955886 GCTCGTTTCATGGGTTAGCTTAGGTATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCGA
1 GCTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGAACCGA
* * ** * * * *
17955951 GGGTTGCTGTAGTAGGACCAGCAGTAGGATTGGTAGCACGTAGAAAGGGACCAGACCGATCCCCG
66 GGGTTGATGTAGAAGGACCAGCAACAGGATCGGCAGCACGCAGAAAGGGACCAGACCGATCCCCA
*
17956016 GCTTGTGCATTCTACCTTTTCGAC
131 GCTTATGCATTCTACCTTTTCGAC
* *
17956040 GCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-TCCCAG-CCGAACC
1 GCTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAT--CAGACCGAACC
** * * **
17956103 GAGGGTT-ATGGTAGAAGGACC-GACAACAGGATCGGCAGCACGCAGAGGGGGACCGGGCTTATC
64 GAGGGTTGAT-GTAGAAGGACCAG-CAACAGGATCGGCAGCACGCAGAAAGGGACCAGACCGATC
*
17956166 CCTAGCTTATGCATT
127 CCCAGCTTATGCATT
17956181 ATGCCTCTTC
Statistics
Matches: 115, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
153 3 0.03
154 109 0.95
155 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (154 bp):
GCTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGAACCGA
GGGTTGATGTAGAAGGACCAGCAACAGGATCGGCAGCACGCAGAAAGGGACCAGACCGATCCCCA
GCTTATGCATTCTACCTTTTCGAC
Found at i:17956284 original size:26 final size:25
Alignment explanation
Indices: 17956234--17956286 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
17956224 GTTGACTTAG
*
17956234 GCATACGGAGTTCTTCCCCAATCTAA
1 GCATACGAAGTTCTT-CCCAATCTAA
17956260 GCATACGAAGTTCATT-CCAAGTCTAA
1 GCATACGAAGTTC-TTCCCAA-TCTAA
17956286 G
1 G
17956287 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.17
26 18 0.75
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (25 bp):
GCATACGAAGTTCTTCCCAATCTAA
Found at i:17956622 original size:159 final size:158
Alignment explanation
Indices: 17956260--17956756 Score: 404
Period size: 159 Copynumber: 3.2 Consensus size: 158
17956250 CCCAATCTAA
* * * * *
17956260 GCATACGAAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGAATCGATA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAAACCGAGGGTTACGACAGCAGAATCGACA
** * * * * * **
17956325 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCC
66 GCACGCAGGGGGGACCAAGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCACC
* *
17956390 CGTACGCCCGTTTCGTGGGTTAGCTTAG
131 CGTACACCCATTTCGTGGGTTAGCTTAG
* * ** * * * * *
17956418 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GAACCGAGGGTTGTCG-CAGCGGGA-CTG
1 GCATACGGAGTTCATTCCAAGTCTAAG-ATCAGATCAAACCGAGGGTT-ACGACAGCAGAATC-G
* * * * *
17956480 GCAGCACGTAGAGGGGGATCAAGCCGATCCCCGACTTGCGTATTATGCCTCTCC-AGCCGGCTCA
63 ACAGCACGCAG-GGGGGACCAAGCCGATCCCCGACTTACGCATTATGCCTCTCCGA-CCGGCTCA
*
17956544 GCACCCGTACACTCATTTCGTGGGTT-GACTTAG
126 GCACCCGTACACCCATTTCGTGGGTTAG-CTTAG
* *
17956577 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAAACCGAGGGTTACGGCAGCAGTATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAAACCGAGGGTTACGACAGCAGAATCGACA
* * * * * ** * ** *
17956642 GCATGTAGGGGGAGACCGAGTCGGTCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCA-
66 GCACGCAGGGGG-GACCAAGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCAC
* * * * *
17956706 -CG----CTCGTTTCATGGTTTGGCTTAG
130 CCGTACACCCATTTCGTGGGTTAGCTTAG
*
17956730 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCAAGTCTAAG
17956757 CATAGGGAGT
Statistics
Matches: 271, Mismatches: 56, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
153 43 0.16
154 1 0.00
157 3 0.01
158 60 0.22
159 163 0.60
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAAACCGAGGGTTACGACAGCAGAATCGACA
GCACGCAGGGGGGACCAAGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCACC
CGTACACCCATTTCGTGGGTTAGCTTAG
Found at i:17956760 original size:26 final size:26
Alignment explanation
Indices: 17956730--17956782 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17956720 TTTGGCTTAG
17956730 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17956756 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17956782 G
1 G
17956783 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17957834 original size:158 final size:160
Alignment explanation
Indices: 17957523--17957942 Score: 483
Period size: 159 Copynumber: 2.6 Consensus size: 160
17957513 AGAGGGACCG
* * *
17957523 GGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCTCGCACG-CCAGTTTCAT
1 GGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCCCA-TTTCAT
* * * * * * *
17957587 CGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCAGCTGGATTGAGGGTTGTGGTA
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACTGGATCGAGGGTTGCGATA
* *
17957651 GCGGGATCGACAGAATGCA-GAGGGGGATCA
130 GCAGGACCGACAGAATGCAGGAGGGGGATCA
* * * * * *
17957681 GGCCAATCCCTGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCCCATTTCATG
1 GGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCATG
* *
17957746 GGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACTGGATCGAGGGTTGCGATA
66 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAAACTGGATCGAGGGTTGCGATA
* * * *
17957810 GCAGGACCGATAGCATG-TGGGGGGGGATCA
130 GCAGGACCGACAGAATGCAGGAGGGGGATCA
* * * * * * * *
17957840 GGCCGGT-CCTCAGCTTGTGCATTCTTCCTCTCCGGTCGACTGAGCACCCGCACGCTCGTTTCAT
1 GGCCGATCCCT-GGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCAT
17957904 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17957943 CATACGGAGT
Statistics
Matches: 218, Mismatches: 38, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
158 88 0.40
159 130 0.60
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (160 bp):
GGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCATG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACTGGATCGAGGGTTGCGATAG
CAGGACCGACAGAATGCAGGAGGGGGATCA
Found at i:17957946 original size:26 final size:26
Alignment explanation
Indices: 17957916--17957968 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17957906 GTTGGCTTAG
17957916 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17957942 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17957968 G
1 G
17957969 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17958743 original size:26 final size:26
Alignment explanation
Indices: 17958707--17958759 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17958697 GTTGACTTAG
*
17958707 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
17958733 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17958759 G
1 G
17958760 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17959252 original size:26 final size:26
Alignment explanation
Indices: 17959221--17959273 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17959211 GTTGACATAG
17959221 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17959247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17959273 G
1 G
17959274 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17959631 original size:26 final size:26
Alignment explanation
Indices: 17959601--17959653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17959591 GTTGACTTGG
*
17959601 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17959627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17959653 G
1 G
17959654 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17959831 original size:368 final size:356
Alignment explanation
Indices: 17958987--17959838 Score: 876
Period size: 367 Copynumber: 2.3 Consensus size: 356
17958977 TGGTCCCTGG
* * ** * * *
17958987 CTTACGCATTCTGCTTCTCC-GATCAACTGAGCGCCCGCACG-TTCGTTTCGAGGGTTGGCTTAG
1 CTTACGCATTCTGCCTCTCCAGCT-GGCTGAGTGCCCGCACGCCT-GTTTCGTGGGTTGGCTTAG
* * **
17959050 GCATACGGAGTTCATTCAATGTCTAAGCCCCAGTCGGATCGAGGGTTATGGTAGCAGGACCGGTA
64 GCATACGGAGTTCATTCAA-GTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGACA
* ** * *
17959115 ACGGGATCAGTAGCACGTAGAAGGGGATCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCAG
128 ACGGGATCAGCAGCACACAGAAGGGGATCGAGCTGATCCCTGACTTACGCATTATGCCTCTCCAG
* *
17959180 CCGGTTGAGTGCCCATACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCT
193 CCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCT
17959245 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCCACAGCAGGACCAG
258 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-------C--GA-CAG
* *
17959310 CAGTAGGATCGGTAGCATGCAGGGGGGACCAAGCTGATCCCCGA
313 CAGTAAGATCGATAGCATGCAGGGGGGACCAAGCTGATCCCCGA
* * *
17959354 CTTACGCATTCTGCCTCTCCAGCTGGCTGAGTGCCCGCAC-CCTTGTTTCGTAGGTTGACCTAGG
1 CTTACGCATTCTGCCTCTCCAGCTGGCTGAGTGCCCGCACGCC-TGTTTCGTGGGTTGGCTTAGG
** * *
17959418 TGTACGGAGTTCATTGCATGTCCAAGCCCCAGTCGGA-CTGAGGGTTGTGGCAGCAGGACCGACA
65 CATACGGAGTTCATT-CAAGTCTAAGCCCCAGTCGGATC-GAGGGTTGTGGCAGCAGGACCGACA
* * * * * *
17959482 GCGGGATC-GACAGCACACAGAGGGGGGTCGGGTTGATCGCTGACTTACGCATTATGCCTCT-CA
128 ACGGGATCAG-CAGCACACAGAAGGGGATCGAGCTGATCCCTGACTTACGCATTATGCCTCTCCA
* * *
17959545 TGCCGGCCTCTCTTGCCGACTGGGTGCCCACACGCTCGTTTCATGGGTTGACTTGGGCATATGGA
192 -GCCGG------TT---GA----GTGCCCACACGCTCGTTTCATGGGTTGACATAGGCATACGGA
** * *
17959610 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTT-
243 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTC
* * *
17959674 G-CAGCAGTAAGATCGATAGCATGCAGGGGGGACCAGGCTGATCCTCGG
308 GACAGCAGTAAGATCGATAGCATGCAGGGGGGACCAAGCTGATCCCCGA
** * * * *
17959722 CTTGTGTATTCTGCCTCTTC-GATCGGTTGAGTGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGG
1 CTTACGCATTCTGCCTCTCCAGCT-GGCTGAGTGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGG
* * *
17959786 CATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAG
65 CATACGGAGTTCATT-CAAGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAG
17959839 GGAGACCGGT
Statistics
Matches: 402, Mismatches: 60, Indels: 45
0.79 0.12 0.09
Matches are distributed among these distances:
366 4 0.01
367 154 0.38
368 139 0.35
369 3 0.01
370 1 0.00
373 2 0.00
376 2 0.00
380 97 0.24
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (356 bp):
CTTACGCATTCTGCCTCTCCAGCTGGCTGAGTGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCAAGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGACAACG
GGATCAGCAGCACACAGAAGGGGATCGAGCTGATCCCTGACTTACGCATTATGCCTCTCCAGCCG
GTTGAGTGCCCACACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCGACAGCAGTAAGATCGAT
AGCATGCAGGGGGGACCAAGCTGATCCCCGA
Found at i:17960112 original size:158 final size:155
Alignment explanation
Indices: 17959627--17960128 Score: 433
Period size: 158 Copynumber: 3.2 Consensus size: 155
17959617 CCCAGTCTAA
* * * *
17959627 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGA-CTGAGGGTTGCAGCAGTAAGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATC-GAGGGTTGCAGCAG-AGGATCGAT
** * * * *
17959691 AGCATGCAGGGGGGACCAGGCTGAT-CCTCGGCTTGTGTATTCTGCCTCTTCGATCGGTTGAGTG
64 AGCACACAGGGGGGACCGGGCTGATCCCT-GGCTTGTGCATTATGCCTC-TCG-TCGGTTGAGCG
* *
17959755 CCCGCACGC-CTGTTTCGTGGGTTGGCTTAG
126 CCTGCACACTC-GTTTCGTGGGTTGGCTTAG
* * ** * * * ** * * *
17959785 GCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGGGAGACCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGCAGAG-GATCGATA
* * * * * *
17959850 GCACACAGAGGGGGACCGGGCTAATCCCCGGCTTGCGCATTAT-CC-CTCTTTGGTTGATTCAGC
65 GCACACAG-GGGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCGTCGGTTGA-GC-GC
* * * * *
17959913 ATCCAAATGCTCATTTCGTGGGTTGACTTAG
127 CTGCACA--CTCGTTTCGTGGGTTGGCTTAG
* *
17959944 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGCAG-AGGATCGATA
* * *
17960009 GCACACAGGGGGGATCGGG-TCGATCCCTGGCTTGTGCATTTTGCCTCTCCCGTCGGCTGAGCGC
65 GCACACAGGGGGGACCGGGCT-GATCCCTGGCTTGTGCATTATGCCTCT--CGTCGGTTGAGCGC
*
17960073 CTGCACACTCGTTTCATGGGTTGGCTTAG
127 CTGCACACTCGTTTCGTGGGTTGGCTTAG
17960102 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17960129 CATACGGAGT
Statistics
Matches: 264, Mismatches: 64, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
155 7 0.03
156 2 0.01
157 9 0.03
158 122 0.46
159 104 0.39
160 12 0.05
161 1 0.00
162 7 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGCAGAGGATCGATAG
CACACAGGGGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCGTCGGTTGAGCGCCTGC
ACACTCGTTTCGTGGGTTGGCTTAG
Found at i:17960153 original size:26 final size:26
Alignment explanation
Indices: 17960102--17960154 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17960092 GTTGGCTTAG
*
17960102 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
17960128 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
17960154 G
1 G
17960155 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17960833 original size:26 final size:26
Alignment explanation
Indices: 17960804--17960856 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17960794 GTTGACATAG
*
17960804 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17960830 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17960856 G
1 G
17960857 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17961222 original size:26 final size:26
Alignment explanation
Indices: 17961172--17961224 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17961162 GTTGACTTGG
*
17961172 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* *
17961198 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
17961224 G
1 G
17961225 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:17961368 original size:368 final size:353
Alignment explanation
Indices: 17960471--17961409 Score: 920
Period size: 368 Copynumber: 2.6 Consensus size: 353
17960461 TGGGTTGACT
* * *
17960471 TAAGCATACGGAGTTCATTCCCAGTCTATGATCGGATCGGACCGAGAGTTACGGTAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGTCGGATCG
* * * * * ** * * **
17960536 ACAACAAGTAGAGGGGGACTGGGCTGGTCCCCAACTTACGCATTCTGCCTCTCCGGTCGATTGAG
66 ACAGCACGCA-AGGGGGAC-GGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGGCCGGCTGAG
* * * * * *
17960601 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTTCATGTCTAAGCCCCAG
129 CTCCCGCAC-ATCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATTTCTAAGCCCCAG
* * * * **** ** *
17960666 AT-GGACTAAGGGTTGTGGCAGTAGGGCCGGCAGTGGGATCAGTAGCACACAGAAGGGGATCGGG
193 -TCGGACCAAGGGTTGTGGCAGCAGGACCGACAACAAGATCAACAGCACACAGAAGGGGATCGGA
** * * *
17960730 CTGATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCACCCGTACTCTCGTTTCATGGG
257 CTGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCAGTACTCTCGTTTCATGGG
*
17960795 TTGACATAGGCATACGAAGTTTATCCCCAGTC
322 TTGACATAGGCATACGAAGTTCATCCCCAGTC
* * * *
17960827 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGCA-ACAGGATC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGTC-GGATC
* * ** *
17960891 GACAGCACGC-AGGGAGGACCAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTGTGGCTGGCTGA
65 GACAGCACGCAAGGG-GGA-CGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGGCCGGCTGA
* ** * * * *
17960955 G-TGCCCG--CATGCTTGTTTTGCGGGTTGACCTAGGCGTACGGAGTTCATTCCATTTCGAAGCC
128 GCT-CCCGCACATCCTT-TCAT--GGGTTGGCTTAGGCATACGGAGTTCATTCCATTTCTAAGCC
* *
17961017 CCAGTCGGACCAAGGGTTGTGGTAGCAGGACCGACAACAAGATCAACAGCACGCAGAAGGGGATC
189 CCAGTCGGACCAAGGGTTGTGGCAGCAGGACCGACAACAAGATCAACAGCACACAGAAGGGGATC
* * * *
17961082 GGACTGATCCCCAGCTTGTGCATTATGCCTGTCCGGCCGGCCTCACTTGTCGACGGAGTGCCCAC
254 GGACTGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGG-CTCA---G-C-AC-CAGT----AC
* * * *
17961147 ATGCTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTC
308 -T-CTCGTTTCATGGGTTGACATAGGCATACGAAGTTCATCCCCAGTC
* * * *
17961195 TAAGCATACGGAGTTCATTCCTACTCTAAGATTGGATCGGACCGAGGGTTACGATAGTCGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGTCGGATCG
** * *
17961260 GTAGCACGCAAGGGGGATCGGGCCGATCCTCGGCTTACGCATTTTGCCTCTCCGACCGGCTGAGC
66 ACAGCACGCAAGGGGGA-CGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGGCCGGCTGAGC
*
17961325 TCCCGCACATCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC-TTGTCTAAGCCCCAG
130 TCCCGCACATCC-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATT-TCTAAGCCCCAG
* *
17961389 TCGGATCGAGGGTTGTGGCAG
193 TCGGACCAAGGGTTGTGGCAG
17961410 TGAGACCGAC
Statistics
Matches: 463, Mismatches: 92, Indels: 44
0.77 0.15 0.07
Matches are distributed among these distances:
352 3 0.01
353 3 0.01
354 5 0.01
355 157 0.34
356 67 0.14
359 1 0.00
360 1 0.00
361 2 0.00
362 2 0.00
366 2 0.00
367 3 0.01
368 203 0.44
369 6 0.01
370 6 0.01
371 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (353 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGTCGGATCG
ACAGCACGCAAGGGGGACGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGGCCGGCTGAGCT
CCCGCACATCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATTTCTAAGCCCCAGTCG
GACCAAGGGTTGTGGCAGCAGGACCGACAACAAGATCAACAGCACACAGAAGGGGATCGGACTGA
TCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCAGTACTCTCGTTTCATGGGTTGA
CATAGGCATACGAAGTTCATCCCCAGTC
Found at i:17961723 original size:26 final size:26
Alignment explanation
Indices: 17961673--17961725 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17961663 GTTGGCTTAG
* *
17961673 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAATTCATTCCATATCTAA
17961699 GCATACGGAATTCATTCCCA-ATCTAA
1 GCATACGGAATTCATT-CCATATCTAA
17961725 G
1 G
17961726 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATATCTAA
Found at i:17962378 original size:26 final size:26
Alignment explanation
Indices: 17962348--17962397 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17962338 GACATAGGCA
17962348 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
17962374 TACGGAGTTCATCCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
17962398 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:17962744 original size:26 final size:26
Alignment explanation
Indices: 17962714--17962766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17962704 GTTGACTTGG
*
17962714 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17962740 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17962766 G
1 G
17962767 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17963073 original size:159 final size:159
Alignment explanation
Indices: 17962908--17963243 Score: 358
Period size: 158 Copynumber: 2.1 Consensus size: 159
17962898 ACATAGGTAT
* * * * * **
17962908 TTCATTCCATGTCTAAGCCCCA-ACTGGATCGAGGGTTGTGGCAGC-GAGACCGGTAGCACGCAG
1 TTCATTCCATGTCTAAGCACCAGACCGGACCGAAGGTTGCGGCAGCAG-GACCGACAGCACGCAG
* * ** *
17962971 AGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATCCCTCTTCGGTCGGCTCAGCGT-CCGAACA
65 -GGGGGACCAGGCCAATCCCCGACTTGCGCATTATCCCTCCCCGATCGGCTCAGC-TCCCGAACA
*
17963035 CTCATTTCATGGGTTAACTTAGGCATACGGAG
128 CTCATTTCATGGGTTAACTTAGGCATACGAAG
* * *
17963067 TTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAAGGTTGCGGTAGCAGGATCGACAGCACGCAG
1 TTCATT-CCATGTCTAAGCACCAGACCGGACCGAAGGTTGCGGCAGCAGGACCGACAGCACGCAG
* * * * * * * *
17963130 GGGGGACCAGGCCAGTCCCCGACTTGTGCATTCTGCCTCCCCGATCGGTTGAGCTCCCGCACTCT
65 GGGGGACCAGGCCAATCCCCGACTTGCGCATTATCCCTCCCCGATCGGCTCAGCTCCCGAACACT
** *
17963195 CATTTCATGGGTTGGCTTAGGTATACGAAG
130 CATTTCATGGGTTAACTTAGGCATACGAAG
17963225 TTCATTCCATGTCTAAGCA
1 TTCATTCCATGTCTAAGCA
17963244 TACGGAGTTC
Statistics
Matches: 144, Mismatches: 27, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
157 4 0.03
158 91 0.63
159 45 0.31
160 4 0.03
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (159 bp):
TTCATTCCATGTCTAAGCACCAGACCGGACCGAAGGTTGCGGCAGCAGGACCGACAGCACGCAGG
GGGGACCAGGCCAATCCCCGACTTGCGCATTATCCCTCCCCGATCGGCTCAGCTCCCGAACACTC
ATTTCATGGGTTAACTTAGGCATACGAAG
Found at i:17963247 original size:26 final size:26
Alignment explanation
Indices: 17963217--17963267 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17963207 TGGCTTAGGT
17963217 ATACGAAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
*
17963243 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
17963268 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:17963688 original size:158 final size:159
Alignment explanation
Indices: 17963316--17963755 Score: 514
Period size: 159 Copynumber: 2.8 Consensus size: 159
17963306 GCAGGATCGA
* * * * * *
17963316 TAGCACGCAG-GAGGGGATCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCCTC
1 TAGCACGCAGAG-GGGGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTTA
* * * **
17963379 TTGCCTGCACGCTCATTTTGTGGGTCAGCTTAGGCATA-CGAAGTTTATTCCATGTCTAAGCCCC
64 GTGCCTGAACGCTCATTTCGTGGGTTGGCTTAGGCATAGCG-AGTTTATTCCATGTCTAAGCCCC
* * ** *
17963443 AGTCGGACCGAGGGTTGTTGCAGTGGGATCGG
128 AGCCGGACCGAGGGTTGTGGCAACGGGATCAG
* * * * *
17963475 CAGCACGTAGAAGGGGACCGAGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTTAGT
1 TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTTAGT
* * * *
17963540 GCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGC
66 GCCTGAACGCTCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTTATTCCATGTCTAAGCCCCAGC
17963605 CGGACCGA-GGTTGTGGCAACGGGATCAG
131 CGGACCGAGGGTTGTGGCAACGGGATCAG
* * *
17963633 TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTTGGCTCAGT
1 TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTTAGT
* * *
17963698 GCCTGAACGTTCATTTCATGGGTTGACTTAGGCATATG-GAGTTTATTTCCA-GTCTAAG
66 GCCTGAACGCTCATTTCGTGGGTTGGCTTAGGCATA-GCGAGTTTA-TTCCATGTCTAAG
17963756 ATCGGATCGG
Statistics
Matches: 237, Mismatches: 39, Indels: 11
0.83 0.14 0.04
Matches are distributed among these distances:
158 116 0.49
159 118 0.50
160 3 0.01
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.26
Consensus pattern (159 bp):
TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTTAGT
GCCTGAACGCTCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTTATTCCATGTCTAAGCCCCAGC
CGGACCGAGGGTTGTGGCAACGGGATCAG
Found at i:17963767 original size:158 final size:158
Alignment explanation
Indices: 17963316--17963755 Score: 496
Period size: 158 Copynumber: 2.8 Consensus size: 158
17963306 GCAGGATCGA
* * * *
17963316 TAGCACGCAG-GAGGGGATCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCCTC
1 TAGCACGCAGAG-GGGGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTTCGG-TAGGCTC
* * * * *
17963379 -TTGCCTGCACGCTCATTTTGTGGG-TCAGCTTAGGCATACGAAGTTTATTCCATGTCTAAGCCC
63 AGTGCCTGAACGCTCATTTCGTGGGTTGA-CTTAGGCATA-GGAGTTTATTCCATGTCTAAGCCC
* ** *
17963442 CAGTCGGACCGAGGGTTGTTGCAGTGGGATCGG
126 CAGTCGGACCGAGGGTTGTGGCAACGGGATCAG
* * * * * * *
17963475 CAGCACGTAGAAGGGGACCGAGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTTAGT
1 TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTAGGCTCAGT
* * * * * *
17963540 GCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGC
66 GCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATAG-GAGTTTATTCCATGTCTAAGCCCCAGT
17963605 CGGACCGA-GGTTGTGGCAACGGGATCAG
130 CGGACCGAGGGTTGTGGCAACGGGATCAG
* *
17963633 TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTTGGCTCAGT
1 TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTAGGCTCAGT
* *
17963698 GCCTGAACGTTCATTTCATGGGTTGACTTAGGCATATGGAGTTTATTTCCA-GTCTAAG
66 GCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATA-GGAGTTTA-TTCCATGTCTAAG
17963756 ATCGGATCGG
Statistics
Matches: 234, Mismatches: 40, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
158 120 0.51
159 112 0.48
160 2 0.01
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.26
Consensus pattern (158 bp):
TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTAGGCTCAGT
GCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATAGGAGTTTATTCCATGTCTAAGCCCCAGTC
GGACCGAGGGTTGTGGCAACGGGATCAG
Found at i:17963806 original size:158 final size:158
Alignment explanation
Indices: 17963319--17963911 Score: 402
Period size: 158 Copynumber: 3.7 Consensus size: 158
17963309 GGATCGATAG
* * * * * *
17963319 CACGCAG-GAGGGGATCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCCTC-TT
1 CACGCAGAG-GGGGACCGGGTC-GATCCCCGACTTGCGCATTATGCCTCTTCGGTC-GGCTCAGT
* * * ** * *
17963381 GCCTGCACGCTCATTTTGTGGG-TCAGCTTAGGCATA-CGAAGTTTATTCCATGTCTAAGCCCCA
63 GCCCGAACGCCCATTTCATGGGTTGA-CTTAGGCATAGCG-AGTTCATTCCATGTCTAAGCCCCA
* * * ** *** * *
17963444 GTCGGACCGAGGGTTGTTGCAGTGGGATCGGCAG
126 GCCGGACC-AAGGATGCGGCAACAGGATCAGCAA
* * * *
17963478 CACGTAGAAGGGGACCGAGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTTAGTGCC
1 CACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGCC
* * *
17963543 CGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGCCGG
66 CGAACGCCCATTTCATGGGTTGACTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * * *
17963608 ACCGAGGTTGTGGCAACGGGATCAGTAG
131 ACCAAGGATGCGGCAACAGGATCAGCAA
* * *
17963636 CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTTGGCTCAGTGCC
1 CACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGCC
* ** * ** * *
17963701 TGAACGTTCATTTCATGGGTTGACTTAGGCATATG-GAGTTTATTTCCA-GTCTAAG-ATCGGAT
66 CGAACGCCCATTTCATGGGTTGACTTAGGCATA-GCGAGTTCA-TTCCATGTCTAAGCCCCAG-C
* *
17963763 CGGACTAAGGGATGCGGCAATAGGATC-GACAA
128 CGGACCAA-GGATGCGGCAACAGGATCAG-CAA
* * * * * * * * * *
17963795 CACGCAG-GGGGGATCGGGTCGGTCCTCGA-TTGGTGCTTTCTGCCTCTTCGGCCGGTTGAGCGC
1 CACGCAGAGGGGGACCGGGTCGATCCCCGACTT-GCGCATTATGCCTCTTCGGTCGGCTCAGTGC
** * *
17963858 CCGTGCGCTCATTTCATGGGTTGGCTTAGGCATA-CAGAGTTCATTCACA-GTCTA
65 CCGAACGCCCATTTCATGGGTTGACTTAGGCATAGC-GAGTTCATTC-CATGTCTA
17963912 TGCATGTGGA
Statistics
Matches: 350, Mismatches: 70, Indels: 29
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.02
158 208 0.59
159 131 0.37
160 4 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.26
Consensus pattern (158 bp):
CACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGCC
CGAACGCCCATTTCATGGGTTGACTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCAAGGATGCGGCAACAGGATCAGCAA
Found at i:17964581 original size:26 final size:26
Alignment explanation
Indices: 17964551--17964603 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17964541 GTTGACTTAG
17964551 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
17964577 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
17964603 G
1 G
17964604 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:17965423 original size:159 final size:159
Alignment explanation
Indices: 17965235--17965598 Score: 378
Period size: 158 Copynumber: 2.3 Consensus size: 159
17965225 TGTACACCTG
* * *** *
17965235 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAAGGGT
** * ** *
17965299 TGTGGCAGCGGGACCGACAGCACGCAGAGGGGG-ATCGAGCTGATCCTCT-GCTTGTGCATTATG
66 TGCAGCAGCAGGACCGACAGCA--CAGAGGGGGCATCGAGCTGATCC-CTGGCTTGCACATTATA
* *
17965362 CCTCTCCGACCGGCTCAACACCTGCACACTCA
128 CCTCTCCGACCGACTCAACACCCGCACACTCA
* * * *
17965394 TTTCATGGGTTGACTTAGGCATACGGAGTTCTTTCCCA-GTCTAAG-ATCAGACCAAACCAAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCAAGGG
* * * * * * *
17965457 TTGCAGCAGCATGATCGACAGCACATAGGGGGCATCGGGTTGATCCCTGGCTTGCATATTTTACC
65 TTGCAGCAGCAGGACCGACAGCACAGAGGGGGCATCGAGCTGATCCCTGGCTTGCACATTATACC
* * * * *
17965522 TCTCCGACTGACTGAGCACCCGCACGCTCG
130 TCTCCGACCGACTCAACACCCGCACACTCA
*
17965552 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17965599 TACAGAGTTT
Statistics
Matches: 165, Mismatches: 34, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
157 13 0.08
158 85 0.52
159 64 0.39
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAAGGGT
TGCAGCAGCAGGACCGACAGCACAGAGGGGGCATCGAGCTGATCCCTGGCTTGCACATTATACCT
CTCCGACCGACTCAACACCCGCACACTCA
Found at i:17965575 original size:158 final size:155
Alignment explanation
Indices: 17965096--17965596 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 155
17965086 CCCCCTCTAA
*
17965096 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * ** * **
17965160 AGTACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCT-TTCTTCCTCTCCGGTTGACTGGGTGC
65 AGCACACAGGGGGATCGGGCTGATCCCTGGCTTGC-ATATT-TTCCTCTCCGACTGACTGAGCAC
17965224 CTGTACACCT-GTTTCGTGGGTTGGCTTAG
128 CTG--CACCTCGTTTCGTGGGTTGGCTTAG
** ** * * *
17965253 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
17965317 AGCACGCAGAGGGGGATCGAGCTGATCCTCT-GCTTGTGCAT-TATGCCTCTCCGACCGGCTCAA
65 AGCA--CACAGGGGGATCGGGCTGATCC-CTGGC-T-TGCATATTTTCCTCTCCGACTGACTGAG
* * *
17965380 CACCTGCACACTCATTTCATGGGTTGACTTAG
125 CACCTGCAC-CTCGTTTCGTGGGTTGGCTTAG
* * *** ** *
17965412 GCATACGGAGTTCTTTCCCA-GTCTAAGATCAGACCAAACCAAGGGTTGCAGCAGCATGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGAC
* *
17965476 AGCACATAGGGGGCATCGGGTTGATCCCTGGCTTGCATATTTTACCTCTCCGACTGACTGAGCAC
65 AGCACACAGGGGG-ATCGGGCTGATCCCTGGCTTGCATATTTT-CCTCTCCGACTGACTGAGCAC
*
17965541 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CTGCAC-CTCGTTTCGTGGGTTGGCTTAG
17965570 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
17965597 CATACAGAGT
Statistics
Matches: 270, Mismatches: 58, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
156 8 0.03
157 71 0.26
158 82 0.30
159 99 0.37
160 7 0.03
161 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGACA
GCACACAGGGGGATCGGGCTGATCCCTGGCTTGCATATTTTCCTCTCCGACTGACTGAGCACCTG
CACCTCGTTTCGTGGGTTGGCTTAG
Found at i:17965606 original size:26 final size:26
Alignment explanation
Indices: 17965570--17965622 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17965560 GTTGGCTTAG
17965570 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
17965596 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17965622 G
1 G
17965623 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17966821 original size:26 final size:26
Alignment explanation
Indices: 17966791--17966843 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17966781 GTTGGCTTAG
17966791 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17966817 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17966843 G
1 G
17966844 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17967202 original size:26 final size:26
Alignment explanation
Indices: 17967172--17967224 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17967162 GTTGACTTAG
17967172 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
17967198 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17967224 G
1 G
17967225 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17967659 original size:158 final size:157
Alignment explanation
Indices: 17967198--17967697 Score: 504
Period size: 158 Copynumber: 3.2 Consensus size: 157
17967188 CCCAATCTAA
* * ** * * *
17967198 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGTGTTACGGCAGTAGGATTGGCA
1 GCATACGAAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGAGTTGTGGCAGCAGGATCGACA
* * * * *
17967263 GCACGCAGGGGGGACCGGGCTGATCCCC-AGCTTGTGCATTCTGTCTCTCCGGTCGGCTGAGTGC
65 GCACGCAGGGGGGACCGGGCTGATCCCCGA-TTTGTGCATTATGCCTCTCCAGTCGGCTGAGCGC
* ** * *
17967327 CCGGATGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
17967356 GCATAGGGAGTTCAGTCCATGTCTAAGCCCCAG-CCAGATCGAGAGTTGTGGCAGCGGGA-CCAG
1 GCATACGAAGTTCATTCCA-GTCTAAG-ATCAGACCAGACCGAGAGTTGTGGCAGCAGGATCGA-
* * * * * * *
17967419 CAGCACGCAGAGGGGGATCGGG-TCGATCCCTGGTTTGCGCATTATGCCTCTTCAATCGGCTCAG
63 CAGCACGCAG-GGGGGACCGGGCT-GATCCCCGATTTGTGCATTATGCCTCTCCAGTCGGCTGAG
*
17967483 CGCCCGCACACTCGTTTCGTGGGTTGACTTAG
126 CGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * *
17967515 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGAGTTGTGGCAGCAGGATCGACA
* * * *
17967580 GCACACAGGGGGGACCGGGCTGATCCCCGATTTATGCATTTTGCCTCTCCAGTCGACTGAGCGCC
65 GCACGCAGGGGGGACCGGGCTGATCCCCGATTTGTGCATTATGCCTCTCCAGTCGGCTGAGCGCC
17967645 CGCACACTCGTTTCGTGGGTTGGCTTAG
130 CGCACACTCGTTTCGTGGGTTGGCTTAG
* * *
17967673 GCAGACGGAGGTCATTCCATGTCTA
1 GCATACGAAGTTCATTCCA-GTCTA
17967698 GGCATACGAA
Statistics
Matches: 272, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 146 0.54
159 119 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGAGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCTGATCCCCGATTTGTGCATTATGCCTCTCCAGTCGGCTGAGCGCCC
GCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:17967962 original size:880 final size:881
Alignment explanation
Indices: 17966266--17968241 Score: 2669
Period size: 880 Copynumber: 2.2 Consensus size: 881
17966256 TGAGTGCACG
* * * *
17966266 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGCTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTC
* * * * *
17966331 ACTCCCAATCTAAGATAGGATCAGATCGAGGGTTACGGCAGCAGGATCGACAGCACGCA-GCGAG
66 ATTCCCAATCTAAGATCGGACCAGATCGAGTGTTACGGCAGCAGGATCGACAGCACGCAGGGGAG
** * * * * ** * *
17966395 ACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGATTGCACGCCCATTT
131 ACCGGGCTGATCCCCAGCTTGTGCATTCTGCCTCTCTGATCGGCTGAGTGACCGCATGCCCGTTT
* * * *
17966460 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGTCGAACCAAGGGTTGTG
196 CATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCGAACCAAGAGTTGTG
* * *
17966525 GCAGCGGGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCTGGTTTGCGCATTTGCCTTTCG
261 GCAGCGGGACCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGTTTGCGCATTTGCCTTTCA
* * ** *
17966590 ATTGGCTCAACGCCTGCATGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTC
326 ATCGGCTCAACGCCCGCACACTCGTTTCGTGGCTTGACTTAGGCATACGAAGTTCATTCCCAGTC
* *
17966655 CAAGATCAGAACGGACTGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGGACTAGGCTG
391 CAAGATCAGAACGGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGGACCAGGCTG
* *
17966720 ATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCGCCCGCACACTCATTTCATGGGTTG
456 ATCCCCAGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTCATTTCATGGGTTG
* * *
17966785 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
521 GCTTAGGCAGACGGAGGTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
17966850 TCGGACTGATGGTTGTGGTAGCAGAACCAGCAGCAGGATTGGCAGCATGTAGGTGGGGACCGAGT
586 CCGGACCGAGGGTTGTGGCAGCAGAACCAGCAGCAGGATCGGCAGCATGCAGGTGGGGACCGAGT
* * * * *
17966915 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACCGAGCGCCCGCACGCTCGTTTCATGGGT
651 CGATCCCCAGCTTGCGCATTCTACCTCTCCAACCGACCGAGCACCCGCACGATCATTTCATGGGT
* * *
17966980 TGGCATAGGCATACGGAGTTCGTTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGTAGTAA
716 TGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGTAA
* * * *
17967045 GACCGGTAGCGGGATAAACAGCACGTAATGAGGGATCGGCCTGATCTTCAACTTGCACATTATGC
781 GACCGGCAGCGGGATAAACAACACGTAAAGAGGGATCGGCCTGATCTTCAACTTACACATTATGC
* * *
17967110 CTCTTAGGCCGGCCTCTCCGATCGGCTGAGCACCCA
846 CTCTCAGGCCGGCCTCTCCGACCCGCTGAGCACCCA
* *
17967146 CACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGAAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTC
* * * * * *
17967211 ATTCCCAGTCTAAGATCGGACCAGACCGAGTGTTACGGCAGTAGGATTGGCAGCACGCAGGGGGG
66 ATTCCCAATCTAAGATCGGACCAGATCGAGTGTTACGGCAGCAGGATCGACAGCACGCAGGGGAG
* * * * *
17967276 ACCGGGCTGATCCCCAGCTTGTGCATTCTGTCTCTCCGGTCGGCTGAGTGCCCGGATGCCCGTTT
131 ACCGGGCTGATCCCCAGCTTGTGCATTCTGCCTCTCTGATCGGCTGAGTGACCGCATGCCCGTTT
* *
17967341 CATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCC-AGATCGAGAGTTGT
196 CATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCGA-ACCAAGAGTTGT
*
17967405 GGCAGCGGGACCAGCAGCACGCAGAGGGGGATCGGGTCGATCCCTGGTTTGCGCATTATGCCTCT
260 GGCAGCGGGACCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGTTTGCGCATT-TGCCT-T
* * *
17967470 TCAATCGGCTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTA
323 TCAATCGGCTCAACGCCCGCACACTCGTTTCGTGGCTTGACTTAGGCATACGAAGTTCATTCCCA
* * * ** *
17967535 GTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACACA-GGGGGGACCGGG
388 GTCCAAGATCAGAACGGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGGACCAGG
* * * * *
17967599 CTGATCCCC-GATTTATGCATTTTGCCTCTCC-AGTCGACTGAGCGCCCGCACACTCGTTTCGTG
453 CTGATCCCCAG-CTTACGCATTCTGCCTCTCCGA-TCGACTGAGCGCCCGCACACTCATTTCATG
*
17967662 GGTTGGCTTAGGCAGACGGAGGTCATTCCATGTCTAGGCATACGAAGTTCATTCCCAGTCTAAGA
516 GGTTGGCTTAGGCAGACGGAGGTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * *
17967727 TCAGACCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCAGGATCGGTAGTATGCAGG-GGGGAC
581 TCAGACCGGACCGAGGGTTGTGGCAGCAGAACCAGCAGCAGGATCGGCAGCATGCAGGTGGGGAC
* * * * *
17967791 TG-GGCTGATCCCCAGCTTGCGCATTCTACCTTTCCAACCGATCGAGCACTCGCA-GATCATTTC
646 CGAGTC-GATCCCCAGCTTGCGCATTCTACCTCTCCAACCGACCGAGCACCCGCACGATCATTTC
* *
17967854 ATGGGTTGGCTTAGGCATACAGATTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
710 ATGGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
* * * * * *** *
17967919 TAGTAGGACCGGCAGCGGGATTAACAACATGTAGAAG-GGGATCGGGCTGATTTTTGGCTTACGC
775 TAGTAAGACCGGCAGCGGGATAAACAACACGTA-AAGAGGGATCGGCCTGATCTTCAACTTACAC
** * * * **
17967983 ATTATGCCTCTCAGGTTGGCCTCTCCGGCCCGTTGAGCAGCTG
839 ATTATGCCTCTCAGGCCGGCCTCTCCGACCCGCTGAGCACCCA
* *
17968026 CACGCTCGTTTTGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTC
* * *
17968091 ATTCCCAATCTAAGATCAGACCGGATCGAGTGTTGCGGCAGCAGGATCGACAGCACGCAGGGGAG
66 ATTCCCAATCTAAGATCGGACCAGATCGAGTGTTACGGCAGCAGGATCGACAGCACGCAGGGGAG
* * * *
17968156 ACCGGG-TCGATCCTCAGCTTGTGCATTCTACCTCTCTGATCAGCTGA-TGACCGTATGCCCGTT
131 ACCGGGCT-GATCCCCAGCTTGTGCATTCTGCCTCTCTGATCGGCTGAGTGACCGCATGCCCGTT
17968219 TCATGGGTTGGCTTAGGCATAGG
195 TCATGGGTTGGCTTAGGCATAGG
17968242 CAGCATGTAG
Statistics
Matches: 949, Mismatches: 138, Indels: 19
0.86 0.12 0.02
Matches are distributed among these distances:
879 38 0.04
880 416 0.44
881 216 0.23
882 176 0.19
883 103 0.11
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (881 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTC
ATTCCCAATCTAAGATCGGACCAGATCGAGTGTTACGGCAGCAGGATCGACAGCACGCAGGGGAG
ACCGGGCTGATCCCCAGCTTGTGCATTCTGCCTCTCTGATCGGCTGAGTGACCGCATGCCCGTTT
CATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCCGAACCAAGAGTTGTG
GCAGCGGGACCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGTTTGCGCATTTGCCTTTCA
ATCGGCTCAACGCCCGCACACTCGTTTCGTGGCTTGACTTAGGCATACGAAGTTCATTCCCAGTC
CAAGATCAGAACGGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGGACCAGGCTG
ATCCCCAGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTCATTTCATGGGTTG
GCTTAGGCAGACGGAGGTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTGTGGCAGCAGAACCAGCAGCAGGATCGGCAGCATGCAGGTGGGGACCGAGT
CGATCCCCAGCTTGCGCATTCTACCTCTCCAACCGACCGAGCACCCGCACGATCATTTCATGGGT
TGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGTAA
GACCGGCAGCGGGATAAACAACACGTAAAGAGGGATCGGCCTGATCTTCAACTTACACATTATGC
CTCTCAGGCCGGCCTCTCCGACCCGCTGAGCACCCA
Found at i:17968089 original size:26 final size:26
Alignment explanation
Indices: 17968052--17968104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17968042 GTTAACTTAG
17968052 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
17968078 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17968104 G
1 G
17968105 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17969269 original size:158 final size:156
Alignment explanation
Indices: 17968998--17969383 Score: 389
Period size: 158 Copynumber: 2.4 Consensus size: 156
17968988 CTTGCACAAC
* * * *
17968998 CTGCCTCTCTGGTCGACTGAATGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
1 CTGCCTCTCTGGCCGGCTG-ATGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
*** * * * * * * * *
17969063 CATCCCCAGTCTAAGATCAAACTAGATCGAGGGTTGCGGTAGCAGGATCGACATCACATAG-GGG
65 CAT-TAAAGTCTAAGACCAAACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACACAGAAGG
*
17969127 AGATCGGGTCGA-TCCTCGACTTACGCATT
129 -GATCGGGCCGATTCC-CGACTTACGCATT
* * *
17969156 CTGCCTCTCTGGCCGGCTGAGTGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
1 CTGCCTCTCTGGCCGGCTGA-TGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
17969221 CATTAAATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACGGGATCGACAGCACACAGAAAG
65 CATTAAA-GTCTAAGACCAAACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACACAG-AAG
* *
17969286 GGATCGGGCCGATTCCCGGCTTGCGCATT
128 GGATCGGGCCGATTCCCGACTTACGCATT
* * * * * * * *
17969315 ATGCCTCTCTGGCCTGCTCATCGCCCGCACTCTTATTTCATGGGTTGAATTAGGCATACAGAGTT
1 CTGCCTCTCTGGCCGGCTGAT-GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
17969380 CATT
65 CATT
17969384 CCCAGTCTAA
Statistics
Matches: 186, Mismatches: 36, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 102 0.55
159 77 0.41
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (156 bp):
CTGCCTCTCTGGCCGGCTGATGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTAAAGTCTAAGACCAAACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACACAGAAGGGA
TCGGGCCGATTCCCGACTTACGCATT
Found at i:17969392 original size:159 final size:158
Alignment explanation
Indices: 17968999--17969436 Score: 407
Period size: 159 Copynumber: 2.8 Consensus size: 158
17968989 TTGCACAACC
* * * * * *
17968999 TGCCTCTCTGGTCGACTGAATGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCTGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * * * * *
17969064 ATCCCCAGTCTAAGATCAAACTAGATCGAGGGTTGCGGTAGCAGGATCGACATCACATAGGGGAG
66 ATTCCCAGTCTAAGACCAAACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACACAGAGGAG
* *
17969129 ATCGGGTCGATCCTCGACTTACGCATTC
131 ATCGGGCCGATCCTCGACTTACGCATTA
* * * *
17969157 TGCCTCTCTGGCCGGCTGAGTGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
1 TGCCTCTCTGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
** * * * *
17969222 ATT-AAATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACGGGATCGACAGCACACAGAAAG
66 ATTCCCA-GTCTAAGACCAAACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACACAG--AG
* *
17969286 G-GATCGGGCCGATTCC-CGGCTTGCGCATTA
128 GAGATCGGGCCGA-TCCTCGACTTACGCATTA
* * * * * *
17969316 TGCCTCTCTGGCCTGCTCA-TCGCCCGCACTCTTATTTCATGGGTTGAATTAGGCATACAGAGTT
1 TGCCTCTCTGGCCGGCTCAGT-GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * * * **
17969380 CATTCCCAGTCTAAGATCGAACTAGACCAAAGGTTGTGGTAGTAGGATCGACAGCAC
65 CATTCCCAGTCTAAGACCAAACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCAC
17969437 GCAGGGGGGA
Statistics
Matches: 225, Mismatches: 49, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 102 0.45
159 116 0.52
160 6 0.03
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (158 bp):
TGCCTCTCTGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGACCAAACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACACAGAGGAG
ATCGGGCCGATCCTCGACTTACGCATTA
Found at i:17970811 original size:26 final size:26
Alignment explanation
Indices: 17970775--17970827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17970765 GTTGACTTAG
17970775 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17970801 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17970827 G
1 G
17970828 ATCGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17971148 original size:26 final size:26
Alignment explanation
Indices: 17971118--17971170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17971108 GTTGGCTTAG
*
17971118 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTCCATCCCCAGTCTAA
*
17971144 GCATATAGAGTCCATTCCCAGTCTAA
1 GCATATAGAGTCCATCCCCAGTCTAA
17971170 G
1 G
17971171 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATATAGAGTCCATCCCCAGTCTAA
Found at i:17971985 original size:26 final size:26
Alignment explanation
Indices: 17971955--17972007 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17971945 GTTGACTTAG
17971955 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* * *
17971981 GCATATGGAGTTTATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
17972007 G
1 G
17972008 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:17972491 original size:26 final size:26
Alignment explanation
Indices: 17972455--17972533 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
17972445 GTTGGCTTAG
*
17972455 GCATAAGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
17972481 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
17972507 GCATATGGAGTTCATTGCCA-GTCTAA
1 GCATATGGAGTTCATT-CCATGTCTAA
17972533 G
1 G
17972534 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:17972865 original size:26 final size:26
Alignment explanation
Indices: 17972835--17972890 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
17972825 TGGGTTGACT
*
17972835 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCAAACAAAGTTCATTCCCAGTC
***
17972861 TAAGCAAATGGAGTTCATTCCCAGTC
1 TAAGCAAACAAAGTTCATTCCCAGTC
17972887 TAAG
1 TAAG
17972891 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCAAACAAAGTTCATTCCCAGTC
Found at i:17973368 original size:26 final size:26
Alignment explanation
Indices: 17973338--17973390 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17973328 GTTGGCTTAG
17973338 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
17973364 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
17973390 G
1 G
17973391 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:17973731 original size:496 final size:496
Alignment explanation
Indices: 17972787--17974096 Score: 1431
Period size: 496 Copynumber: 2.6 Consensus size: 496
17972777 TCTCTGACCA
* ** * * * *
17972787 GCCTCTCCGATCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACAAAGTTCA
1 GCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA
* * *
17972852 TTCCCA-GTCTAAGCAAATGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTGTAG-
66 TT-CCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTCGA
* * * * * * *
17972915 TAGTAGGATCGGCAGCACGCT-GGGGGGACTGGGCTGATCCTCGACTTGCACATTCTGCCTCTCC
130 TAGCAGAATCGGCAGCATG-TAGGGGGGACCGGGCCGATCCTAG-CTTGCGCATTCTGCCTCTCC
* *
17972979 GATTG-GCTGAGTGCCCGCAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
193 GGTTGAGC--A-T--CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* *
17973043 TCTAAGCCCCAGCCGGATCGAGGGTTGTTGCAACGGGACTGGCAGCACGCAGAGGAGGATCGGGC
253 TCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAACGGGACTGACAGCACGCAGAGGAGGATCGGGC
* * * * * * * * * * *
17973108 TGATCCCTGGCTTGTGCATATGCCACTTCGGTCGGCTTAGCGCCTGCACTCTCGTCTCGTGGGTT
318 TGATCCCCGACTTGCGCATATGCCACTCCGATCAGCTCAGCGCCCGCACGCTCATCTCATGGGTT
* * ** * *
17973173 GACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGTAGCAGG
383 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGG
* *
17973238 ATCGACAGCAAGTAGGGGAG-CCCGATCTAATCCCCGGCTTACGCATTCT
448 ATCGACAGCAAGCAGGGGAGACCCGATC-AATCCCCGACTTACGCATTCT
* **
17973287 GCCTCT-CTGTCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTC
1 GCCTCTCCGGT-CGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTC
*
17973351 ATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-TCGA
65 ATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTCGA
* *
17973415 TAGCAGAATCGACAGCATGTAGGGGGGACCGGGCCGATTCTTAGCTTGCGCATTCTGCCTCTCCG
130 TAGCAGAATCGGCAGCATGTAGGGGGGACCGGGCCGA-TCCTAGCTTGCGCATTCTGCCTCTCCG
17973480 GTTGAGCATCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
194 GTTGAGCATCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* ** * * *
17973545 CCCCAGTCGGATCGAGGGTTGTGGCAGTGGG-CTCGACAGCACGTAGAGGGGGATTGGGCTGATC
259 CCCCAGCCGGATCGAGGGTTGTGGCAACGGGACT-GACAGCACGCAGAGGAGGATCGGGCTGATC
* *
17973609 CCCGACTTGCG-ATTATGCCTCTCCGATCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGAAC
323 CCCGACTTGCGCA-TATGCCACTCCGATCAGCTCAGCGCCCGCACGCTCATCTCATGGGTTG-AC
* * *
17973673 -TAGGCGTAC-AGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGAT
386 TTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGAT
* * * ** *
17973736 CGACAGCACGCAGGGGGGACCCGATCGATCTTCGACTTGCGCATTCT
450 CGACAGCAAGCAGGGGAGACCCGATCAATCCCCGACTTACGCATTCT
* * *
17973783 GCCTCTCCGGTCGACTGAGGGCCCAG-ACGCTCGATTCGTGGGTTGGCTTAGGCATACAGAGTTC
1 GCCTCTCCGGTCGACTGAGCGCCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTC
* * * *
17973847 ATTCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATTGGATCGAACCAAGGGTTGTGGC
65 ATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGT---
* * * * * * * *
17973912 AACAGGACCAGCAGTAGGATTGGCAGCATGCAGGGGGGATCGAGCCGATCGCCATCTTGCGTATT
127 --C--GA-TAGCAG-A--ATCGGCAGCATGTAGGGGGGACCGGGCCGATC-CTAGCTTGCGCATT
* * * * **
17973977 CTACCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTT
183 CTGCCTCT-C---CGGTTGAGCATCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
* * * * *
17974042 CATTCCATGTCTAAGCCCCAGCCAGA-CAGAGGGTTATGGCAGCAGGACCGACAGC
244 CATTCCATGTCTAAGCCCCAGCCGGATC-GAGGGTTGTGGCAACGGGACTGACAGC
17974097 GGGATTGGCA
Statistics
Matches: 682, Mismatches: 96, Indels: 52
0.82 0.12 0.06
Matches are distributed among these distances:
495 4 0.01
496 344 0.50
497 14 0.02
498 1 0.00
499 9 0.01
500 156 0.23
501 6 0.01
502 1 0.00
504 2 0.00
505 5 0.01
506 1 0.00
507 2 0.00
508 42 0.06
509 1 0.00
511 1 0.00
512 92 0.13
513 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (496 bp):
GCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTCGAT
AGCAGAATCGGCAGCATGTAGGGGGGACCGGGCCGATCCTAGCTTGCGCATTCTGCCTCTCCGGT
TGAGCATCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGCCGGATCGAGGGTTGTGGCAACGGGACTGACAGCACGCAGAGGAGGATCGGGCTGATCCCC
GACTTGCGCATATGCCACTCCGATCAGCTCAGCGCCCGCACGCTCATCTCATGGGTTGACTTAGG
CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAG
CAAGCAGGGGAGACCCGATCAATCCCCGACTTACGCATTCT
Found at i:17973786 original size:158 final size:155
Alignment explanation
Indices: 17973371--17973860 Score: 451
Period size: 158 Copynumber: 3.1 Consensus size: 155
17973361 TAAGCATATG
* * * *
17973371 GAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTTCGATAGCAGAATCGACAGCATGT
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTT-GGTAGCAGGATCGACAGCACGT
* * * **
17973435 AGGGGGGACCGGGCCGATTCTTAG-CTTGCGCATTCTGCCTCTCCG--GTTGAGCATCCGCACGC
64 AGGGGGGACCCGGCCGA-TCTTCGACTTGCGCATTCTGCCTCTCCGTCGCTGAGCGCCCGCACGC
* * **
17973497 CCGTTTCATGGGTTGGCTTAGGCATAGG
128 TCATTTCATGGGTTGGCTTAGGCATACA
** * * * ** *
17973525 GAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGTGGGCTCGACAGCACGT
1 GAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTT-TGGTAGCAGGATCGACAGCACGT
*** * ** * *
17973589 AGAGGGGGATTGGGCTGATCCCCGACTTGCG-ATTATGCCTCTCCGATCAGCTCAGCGCCCGCAC
64 AG-GGGGGACCCGGCCGATCTTCGACTTGCGCATTCTGCCTCTCCG-TC-GCTGAGCGCCCGCAC
* *
17973653 GCTCATTTCATGGGTTGAAC-TAGGCGTACA
126 GCTCATTTCATGGGTTG-GCTTAGGCATACA
*
17973683 GAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGC
1 GAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTT-TGGTAGCAGGATCGACAGCACGT
** *
17973747 AGGGGGGACCCGATCGATCTTCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGGGCCCAG-AC
64 AGGGGGGACCCGGCCGATCTTCGACTTGCGCATTCTGCCTCTCC-GTCG-CTGAGCGCCC-GCAC
*
17973811 GCTCGA-TTCGTGGGTTGGCTTAGGCATACA
126 GCTC-ATTTCATGGGTTGGCTTAGGCATACA
17973841 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
17973861 CATATGGAGT
Statistics
Matches: 264, Mismatches: 53, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
153 3 0.01
154 61 0.23
155 21 0.08
157 26 0.10
158 148 0.56
159 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTTGGTAGCAGGATCGACAGCACGTAG
GGGGGACCCGGCCGATCTTCGACTTGCGCATTCTGCCTCTCCGTCGCTGAGCGCCCGCACGCTCA
TTTCATGGGTTGGCTTAGGCATACA
Found at i:17974742 original size:26 final size:26
Alignment explanation
Indices: 17974712--17974763 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17974702 CTTGGCTTAG
*
17974712 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17974738 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17974764 CATTTTGAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17976014 original size:26 final size:26
Alignment explanation
Indices: 17975985--17976037 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17975975 GTTGGCTTAG
17975985 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
17976011 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17976037 G
1 G
17976038 ATTTTGTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17976758 original size:183 final size:184
Alignment explanation
Indices: 17976398--17976758 Score: 424
Period size: 183 Copynumber: 2.0 Consensus size: 184
17976388 AGGCATAAGA
*
17976398 AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCAGTAGTAGGATCAACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCAGTAGCAGGATCAACAGCACGCAG
* * * * * * *
17976463 GAGGGACTGGGTTGATCCCCGATATGAGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCT
66 GAGGGACCGAGTCGATCCCCGATATGAGCACTCTACCTCTCCGACCAGTTGAGCACCAGCACGCT
* * * *
17976528 CATTTCATGGGCTGGCTTAGGCTTAGGGGGTTCATTCCATGTCTAAGCATATGG
131 CAGTTCATGGGCTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATATGG
* ** ** * *
17976582 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCAGTAGCAGGATCAACAGCACGCAG
* * * * *
17976647 G-GGGACCGAGTCGATCCCCAGCT-TGCGCACTCTGCCTCTCC-ACTCAGTTGAGTACCAGCTCG
66 GAGGGACCGAGTCGATCCCC-GATATGAGCACTCTACCTCTCCGAC-CAGTTGAGCACCAGCACG
* * *
17976709 -TCCGGTTCGTGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 CT-CAGTTCATGGGCTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17976759 CCCAGCCAGA
Statistics
Matches: 147, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
182 3 0.02
183 84 0.57
184 60 0.41
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCAGTAGCAGGATCAACAGCACGCAG
GAGGGACCGAGTCGATCCCCGATATGAGCACTCTACCTCTCCGACCAGTTGAGCACCAGCACGCT
CAGTTCATGGGCTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATATGG
Found at i:17976890 original size:159 final size:158
Alignment explanation
Indices: 17976574--17977072 Score: 490
Period size: 159 Copynumber: 3.2 Consensus size: 158
17976564 CCATGTCTAA
* * * * * * *
17976574 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGAC
* * ** * * * * *
17976638 AGCACGTAG-GGGG-ACCGAGTCGATCCCCAGCTTGCGCACTCTGCCTCTCC-ACTCAGTTGAGT
65 AGCACGCAGAGGGGCACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGA-TCAGCTCAGC
* * * *
17976700 ACCAGCTCG-TCCGGTTCGTGGGTTCGCTTAG
129 GCCCGCACGCT-CGTTTCGTGGGTT-GCTTAG
* * *
17976731 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * *
17976795 AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCAGCTCAGCT
65 AGCACGCAGAGGGGCACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCAGCTCAGCG
* *
17976860 CCCGTATGCTCGTTTCGTGGGTTGACTTAG
130 CCCGCACGCTCGTTTCGTGGGTTG-CTTAG
* * *** *
17976890 GCATACGGAGTTCATTACCA-GTCTAAGATCGGACCAGATTGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
17976954 AGCACGTAGTGGGGCCCCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
65 AGCACGCAGAGGGGCACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCAGCTCAGCG
*
17977019 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTT-GCTTAG
17977049 GCATACGGAGTTCATTCCATGTCT
1 GCATACGGAGTTCATTCCATGTCT
17977073 GAGCATACGG
Statistics
Matches: 282, Mismatches: 49, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
156 3 0.01
157 56 0.20
158 12 0.04
159 205 0.73
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGCACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCAGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGCTTAG
Found at i:17977358 original size:11 final size:11
Alignment explanation
Indices: 17977342--17977367 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17977332 CTCGAGGCAC
17977342 CATCGCCGGAG
1 CATCGCCGGAG
17977353 CATCGCCGGAG
1 CATCGCCGGAG
17977364 CATC
1 CATC
17977368 ACCAGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.38, G:0.31, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:17977994 original size:26 final size:26
Alignment explanation
Indices: 17977957--17978009 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17977947 GTTGACTTAG
17977957 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17977983 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
17978009 G
1 G
17978010 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17978495 original size:26 final size:26
Alignment explanation
Indices: 17978458--17978510 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17978448 GTTGGCTTAG
*
17978458 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17978484 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17978510 G
1 G
17978511 ATAAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17978867 original size:26 final size:26
Alignment explanation
Indices: 17978838--17978890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17978828 GTTGACTTAG
17978838 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
17978864 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17978890 G
1 G
17978891 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17979220 original size:26 final size:26
Alignment explanation
Indices: 17979180--17979232 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17979170 GTTGGCTTAG
17979180 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
* *
17979206 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
17979232 G
1 G
17979233 ATCATATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:17979517 original size:354 final size:343
Alignment explanation
Indices: 17978787--17979551 Score: 761
Period size: 354 Copynumber: 2.2 Consensus size: 343
17978777 TCTCCAACCG
* * * * * *
17978787 GCCTCTCTGGCCGGCTGAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCA
1 GCCTCTCTGACCAGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
17978852 -TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGC
66 TTCCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAATGAGGGTTGCGAC
* * *
17978916 AGCAGGAACGACAGCACGCAAAGGGGATCGGGCGAATCCTCCGCTTGCGTATTCTGCCTCTCTGA
131 AGCAGGAACGACAGCACGCAAAGGGGACCGGGCGAATCCTCCGCTTGCGCATTCTGCCTCTCCGA
* * *
17978981 TCAACTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCT
196 CCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
** *** ** * *
17979046 AAGACCCAACCAAACTGAGGGTTATGGCTGTGGGACCGACAGCACGCAGGGGGGATCGGGTCGAT
261 AAGACCCAACCAAACCAAGGGTTATGGCAACGGGACCGACAGCACGCAGAAGGGACCGAGTCGAT
17979111 CCCAGGCTTGCGCATTAT
326 CCCAGGCTTGCGCATTAT
** * * *
17979129 GCCTCTCTGGTCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGCTCA
1 GCCTCTCTGACCAGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
17979194 TTCCAT-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCATATCGGAAT-AGGGGTTGCGA
66 TTCCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAATGA-GGGTTGCGA
* ** * *
17979257 CAGTAGGACCAACAGCAGGATCAGTCGCACGCAGGGGGGACCGAGGCG-ATCCTCGGCTTGTGCA
130 CAGCAGG----A-A-C--GA-CA---GCACGCAAAGGGGACCG-GGCGAATCCTCCGCTTGCGCA
* ** * * * * *
17979321 TTCTGCCTCTCCGCCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGTCTTAGGCGTAGGGAG
182 TTCTGCCTCTCCGACCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
* ** * * * * * *
17979386 TTCATTCCATGTCTAAGCCCCAGTCAGACCAATGGTTGTGGCAACGGGATCGGCAGCACGTAGAA
247 TTCATTCCATGTCTAAGACCCAACCAAACCAAGGGTTATGGCAACGGGACCGACAGCACGCAG-A
17979451 AGGGACCGAGTCGATCCTC-GGCTTGCGCA-TAT
311 AGGGACCGAGTCGATCC-CAGGCTTGCGCATTAT
* * * * * * * *
17979483 GCCTCT-TCGACCGGCTCAGTGCCTGCATGCTCGTTTCGTGGGTTTACTTAGGCACACAGAGTTC
1 GCCTCTCT-GACCAGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
17979547 ATTCC
65 ATTCC
17979552 CAATCTAAGA
Statistics
Matches: 341, Mismatches: 64, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
341 1 0.00
342 113 0.33
343 4 0.01
346 1 0.00
347 1 0.00
348 1 0.00
350 2 0.01
351 2 0.01
353 1 0.00
354 186 0.55
355 28 0.08
356 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
GCCTCTCTGACCAGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAATGAGGGTTGCGAC
AGCAGGAACGACAGCACGCAAAGGGGACCGGGCGAATCCTCCGCTTGCGCATTCTGCCTCTCCGA
CCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGACCCAACCAAACCAAGGGTTATGGCAACGGGACCGACAGCACGCAGAAGGGACCGAGTCGAT
CCCAGGCTTGCGCATTAT
Found at i:17979571 original size:158 final size:159
Alignment explanation
Indices: 17979293--17979718 Score: 395
Period size: 158 Copynumber: 2.7 Consensus size: 159
17979283 GCACGCAGGG
* * * *
17979293 GGGACCGAGGCGATCCTCGGCTTGTGCATTCTGCCTCTCCGCCCGGCTGAGTGCCCGCACGCTCG
1 GGGACCGAGGCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCG
** ** * *
17979358 TTTCGTGGGTTGTCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAATGGTT
66 TTTCGTGGGTTGTCTTAGGCACACAGAGTTCATTCCATATCTAAGCCCCAGTCAGACCAAGGGTT
17979423 GTGGCAACGGGATCGGCAGCACGTAGAAA
131 GTGGCAACGGGATCGGCAGCACGTAGAAA
* * * *
17979452 GGGACCGAGTCGATCCTCGGCTTGCGCA-TATGCCTCTTCGACCGGCTCAGTGCCTGCATGCTCG
1 GGGACCGAGGCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCG
** * **
17979516 TTTCGTGGGTT-TACTTAGGCACACAGAGTTCATTCCCA-ATCTAAG-ATCGGATCAGACTGAGG
66 TTTCGTGGGTTGT-CTTAGGCACACAGAGTTCATT-CCATATCTAAGCCCCAG-TCAGACCAAGG
* **
17979578 GTTGTGGCAGTA-GGG-TCGACAGCACGTAG-GG
128 GTTGTGGCA--ACGGGATCGGCAGCACGTAGAAA
* * * * * * * * *
17979609 GGGACTG-GGCTGATCCTCGACTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCACACGCTC
1 GGGACCGAGGC-GATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTC
* ** * *
17979673 GTTTCCT-GGTTAG-CTTAGGCGTACGGAGTTCATTCCATGTCTAAGC
65 GTTTCGTGGGTT-GTCTTAGGCACACAGAGTTCATTCCATATCTAAGC
17979719 ATACGGAGTT
Statistics
Matches: 218, Mismatches: 38, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
156 5 0.02
157 52 0.24
158 128 0.59
159 32 0.15
160 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.25
Consensus pattern (159 bp):
GGGACCGAGGCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCG
TTTCGTGGGTTGTCTTAGGCACACAGAGTTCATTCCATATCTAAGCCCCAGTCAGACCAAGGGTT
GTGGCAACGGGATCGGCAGCACGTAGAAA
Found at i:17979730 original size:26 final size:26
Alignment explanation
Indices: 17979694--17979743 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17979684 AGCTTAGGCG
17979694 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
17979720 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17979744 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:17980619 original size:26 final size:26
Alignment explanation
Indices: 17980583--17980635 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17980573 GTTGACTTAG
17980583 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17980609 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17980635 G
1 G
17980636 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17981347 original size:12 final size:12
Alignment explanation
Indices: 17981332--17981360 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
17981322 AGGGTTGTGG
17981332 CAGCAGGATCGA
1 CAGCAGGATCGA
17981344 CAGCAGGATCGA
1 CAGCAGGATCGA
17981356 CAGCA
1 CAGCA
17981361 CGCAGAGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.28, G:0.31, T:0.07
Consensus pattern (12 bp):
CAGCAGGATCGA
Found at i:17981488 original size:26 final size:26
Alignment explanation
Indices: 17981452--17981504 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17981442 GTTGACTTAG
*
17981452 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATAAGGAGTTCATTCCC-AGTCTAA
17981478 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
17981504 G
1 G
17981505 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:17981825 original size:26 final size:26
Alignment explanation
Indices: 17981793--17981845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17981783 GTTGACTTAG
*
17981793 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17981819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17981845 G
1 G
17981846 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17982136 original size:159 final size:160
Alignment explanation
Indices: 17981947--17982323 Score: 415
Period size: 159 Copynumber: 2.4 Consensus size: 160
17981937 CGACTCGACG
* ** * * *
17981947 CCCGCACGCCCATTTCATGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* ** * * * * *
17982011 CGGATCGAGGGTTGTGGCAACGGGGACCGGTAGCACGCATAGGGGGACTGGGTCAATCC-CTGAC
66 CGGACCGAGGGTTACGACAAC-AGGACCGATAGCACGCAGAGGGGGACTGGGCCAATCCTC-GAC
* *
17982075 TT-CGCA-TCATGCCTCTTCAACCGGCTCAGCA
129 TTACGCATTC-TACCTCTCCAACCGGCTCAGCA
** * * *
17982106 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * * *
17982169 CCGGACCGAGGGTTACGACAGCAGGATCGATAGCACGCAGGGGGGGACTGGGCCAATCCTCGGCT
65 CCGGACCGAGGGTTACGACAACAGGACCGATAGCACGCAGAGGGGGACTGGGCCAATCCTCGACT
* * *
17982234 TACGCATTCTACCTCTCCGACCGGCTGAGCG
130 TACGCATTCTACCTCTCCAACCGGCTCAGCA
*
17982265 CCCGCACGCTCATTTCATGGGTGGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17982324 TATGGAGTTC
Statistics
Matches: 178, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
158 41 0.23
159 131 0.74
160 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CGGACCGAGGGTTACGACAACAGGACCGATAGCACGCAGAGGGGGACTGGGCCAATCCTCGACTT
ACGCATTCTACCTCTCCAACCGGCTCAGCA
Found at i:17982325 original size:26 final size:26
Alignment explanation
Indices: 17982295--17982347 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17982285 GTGGGCTTAG
17982295 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17982321 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17982347 G
1 G
17982348 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17982712 original size:26 final size:26
Alignment explanation
Indices: 17982675--17982727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17982665 GTTGACTTAG
17982675 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17982701 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17982727 G
1 G
17982728 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17983228 original size:26 final size:26
Alignment explanation
Indices: 17983176--17983228 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17983166 GTTGGCTTAG
*
17983176 GCATACGAAATTCATTCCATGTCTAA
1 GCATACGAAATTCATTCCATGTATAA
* *
17983202 GCATACGGAGTTCATTCC-TAGTATAA
1 GCATACGAAATTCATTCCAT-GTATAA
17983228 G
1 G
17983229 ATTGGACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAATTCATTCCATGTATAA
Found at i:17983582 original size:881 final size:882
Alignment explanation
Indices: 17981746--17983801 Score: 2361
Period size: 881 Copynumber: 2.3 Consensus size: 882
17981736 CATCATGCCC
* * *
17981746 CTCCGGCCGGCTCAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGATTTCATCCC
1 CTCCGGCCGGCTGAGTGCCCGCACGCTCATTTCAT-GGTTGACTTAGGCATACGGAGTTCATCCC
* * *
17981811 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AAACTGGACCGAGGGTGGTGGTAGCA
65 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAAC-GGATCGAGGGTTGCGGTAGCA
* * * *
17981875 GGATCGGCAGCACGCATGGGGGACCGGGCCGATCCCCGGCTTGAGCATTTTACCTCTCTGACCGA
129 GGATCGGCAACACGCATGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTACCTCTCTAACCGA
* **
17981940 CTCGACGCCCGCACGCCCATTTCATGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAGC
194 CTCGACGCCAGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
** * * * ** *
17982005 CCCAGTCGGATCGAGGGTTGTGGCAACGGGGACCGGTAGCACGCATAGGGGGACTGGGTCAATCC
259 CCCAACCGGACCGAGGGTTGTAGCAACGAGGACCGACAGCACGCAGAGGGGGACTGGGTCAATCC
* * * *
17982070 CTGACTTCGCATCATGCCTCTTCAACCGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTA
324 CAGACTTCGCATCATGCCTCTCCAACCAGCTCAGCACCCGCACGCTTGTTTCGTGGGTTAACTTA
* *
17982135 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGAT
389 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGAC
* * *
17982200 AGCACGCAGGGGGGGACTGGGCCAATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCG
454 AGCACGCAGGGGGGGACAGGGCCAATCCTCGGCTTACGAATTCTACCTCTCCGACCGGCTGAGCA
* * *
17982265 CCCGCACGCTCATTTCATGGGTGGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGA
519 CCCGCACGCTCATTTCATGGGTGGGCTTAGGCATACGAAATTCATTCCATGTCTAAGCATACGGA
* * *
17982330 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGATAGCAGGACCAGCAGCAGGATTG
584 GTTCATTCCCAGTATAAGATCAGACCAAACCGAGGGTTACGATAGCAGGACCAGCAGCAGGATCG
* * * * * * *
17982395 GCAGCATGCAGGGGGGGACCGGGCCGATTCTCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAG
649 ACAACACGCAGGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTACGACCGGCTGAG
* * *
17982460 TGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG
714 CGCCCGCAAGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAACCCCCAG
* * * * * * *
17982525 CCGGACTGAGGGTTGTGGTAGCAGAACTGGCAGCGGGATCGATAACACGTAGAGGGGGATCAGGC
779 CCGGACTAAGGGTTGTGGCAGAAGAACTGACAGCGGGATCGACAACACGCAAAGGGGGATCAGGC
* **
17982590 TGATCCTCGGCTTGTGCATTATGCCTCTCCGACCGGCCT
844 TGATCCTCAGCTTACGCATTATGCCTCTCCGACCGGCCT
* * * * *
17982629 CTCTGGCCGACTGAGTGCTCGCAC-CTCATTTCGTTGGTTGACTTAGGCATACGAAGTTCATCCC
1 CTCCGGCCGGCTGAGTGCCCGCACGCTCATTTC-ATGGTTGACTTAGGCATACGGAGTTCATCCC
*
17982693 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGTAGCAG
65 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGATCGAGGGTTGCGGTAGCAG
* * * * * *
17982758 GATCGGCAACACGTA-GGAGGGATCGGGTCGATCTCCAGCTT-ACGTATTCTGCCTCT-TCAACC
130 GATCGGCAACACGCATGG-GGGACCGGGCCGATCCCCAGCTTGA-GCATTCTACCTCTCT-AACC
*
17982820 GGA-T-GACCGCCAGCACGCCCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
192 -GACTCGA-CGCCAGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * ** *
17982883 AAGCCCCAACCGGACCGAGGGTTGTAGCAAC-AGTATCGACAGCACGCAGATTGGGACTGGGTCG
255 AAGCCCCAACCGGACCGAGGGTTGTAGCAACGAGGACCGACAGCACGCAGAGGGGGACTGGGTCA
* * ** *
17982947 ATCCCCAG-CTTGCGCATTATGCCTCTCCGATTAGCTCAGCTCCCAG-ACGCTTGTTTCGTGGGT
320 AT-CCCAGACTT-CGCATCATGCCTCTCCAACCAGCTCAGCACCC-GCACGCTTGTTTCGTGGGT
* * *
17983010 TAACTTAGGCATACGGAGTTCATTCCCAG-CTAAGATTAGACCAGACTGAGGGTTACGATAGCAG
382 TAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAG
* * * * ** * * * * *
17983074 GATCGACAGCACGTAGGGGGGGACAGGGTCGATTCTCGGCTTGTGAATTTTGCCTCTTCGGCCTG
447 GATCGACAGCACGCAGGGGGGGACAGGGCCAATCCTCGGCTTACGAATTCTACCTCTCCGACCGG
* ** *
17983139 TTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAATTCATTCCATGTCTAAGC
512 CTGAGCACCCGCACGCTCATTTCATGGGTGGGCTTAGGCATACGAAATTCATTCCATGTCTAAGC
* ** * * *
17983204 ATACGGAGTTCATTCCTAGTATAAGATTGGACCAAATCGAGGGTTACGGTAGCAGGACCAGTAGC
577 ATACGGAGTTCATTCCCAGTATAAGATCAGACCAAACCGAGGGTTACGATAGCAGGACCAGCAGC
* * * *
17983269 AGGATCGACAACACGCA-GGGGGGACCGAGG-TGATCCTTGGCTTGCGCATTCTGCTTCTACGAT
642 AGGATCGACAACACGCAGGGGGGGACCG-GGCCGATCCTCGGCTTGCGCATTCTGCCTCTACGAC
* *
17983332 CGGCTGAGCGTCCGCAAGCTT-GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTGCATGTCT
706 CGGCTGAGCGCCCGCAAG-TTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
* * **
17983396 AACCCCCAGCCGGA-TCAAGGGTTGTGGCAGAAGGA-TCGACAGCGGGATCGGCAGTACGCAAAG
770 AACCCCCAGCCGGACT-AAGGGTTGTGGCAGAAGAACT-GACAGCGGGATCGACAACACGCAAAG
** * * **
17983459 GGGGATTGGGCTGATCC-CAAGCTTACGCGTTATGCCTCTTCGGTCGGCCT
833 GGGGATCAGGCTGATCCTC-AGCTTACGCATTATGCCTCTCCGACCGGCCT
* * * ** * *
17983509 CTCCAGCCGGCTGAATGCCCGCACGCTCGTTTCATGGCTTTCCTTAGGCATGCGGAGTTCAT-TC
1 CTCCGGCCGGCTGAGTGCCCGCACGCTCATTTCATGG-TTGACTTAGGCATACGGAGTTCATCCC
* * *
17983573 CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTTGCA
65 CA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGATCGAGGGTTGCGGTAGCA
* * * * ** *
17983638 GGACCAGTAGCAGGATTGGCAGCATGCAGGGGGGAACCGGGCCGATCCTCGGCTTGCTCATTCTG
129 GGATC-G--GCA--A----CA-C--GCATGGGGG-ACCGGGCCGATCCCCAGCTTGAGCATTCTA
* * * * * * * *
17983703 CCTTTCCAGCCGACT-GAGTGCTCA-CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
181 CCTCTCTAACCGACTCGA-CGC-CAGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTC
* *
17983766 ATTCCTTGTCTAAGCCCCAGCCGGACCGAGGGTTGT
244 ATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGT
17983802 GGTGGCAGGA
Statistics
Matches: 981, Mismatches: 156, Indels: 61
0.82 0.13 0.05
Matches are distributed among these distances:
879 3 0.00
880 203 0.21
881 338 0.34
882 292 0.30
883 26 0.03
884 3 0.00
886 1 0.00
890 2 0.00
891 1 0.00
893 7 0.01
894 103 0.10
895 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (882 bp):
CTCCGGCCGGCTGAGTGCCCGCACGCTCATTTCATGGTTGACTTAGGCATACGGAGTTCATCCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGATCGAGGGTTGCGGTAGCAGG
ATCGGCAACACGCATGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTACCTCTCTAACCGACT
CGACGCCAGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
CAACCGGACCGAGGGTTGTAGCAACGAGGACCGACAGCACGCAGAGGGGGACTGGGTCAATCCCA
GACTTCGCATCATGCCTCTCCAACCAGCTCAGCACCCGCACGCTTGTTTCGTGGGTTAACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAG
CACGCAGGGGGGGACAGGGCCAATCCTCGGCTTACGAATTCTACCTCTCCGACCGGCTGAGCACC
CGCACGCTCATTTCATGGGTGGGCTTAGGCATACGAAATTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTATAAGATCAGACCAAACCGAGGGTTACGATAGCAGGACCAGCAGCAGGATCGAC
AACACGCAGGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTACGACCGGCTGAGCG
CCCGCAAGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAACCCCCAGCC
GGACTAAGGGTTGTGGCAGAAGAACTGACAGCGGGATCGACAACACGCAAAGGGGGATCAGGCTG
ATCCTCAGCTTACGCATTATGCCTCTCCGACCGGCCT
Found at i:17983590 original size:26 final size:26
Alignment explanation
Indices: 17983556--17983608 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17983546 CTTTCCTTAG
*
17983556 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17983582 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17983608 G
1 G
17983609 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17983954 original size:26 final size:26
Alignment explanation
Indices: 17983924--17983976 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17983914 GTTGACTTAG
17983924 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
**
17983950 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17983976 G
1 G
17983977 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17984324 original size:26 final size:26
Alignment explanation
Indices: 17984294--17984343 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17984284 GACTTAGGCA
17984294 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
17984320 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
17984344 ATCGCATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:17984832 original size:159 final size:159
Alignment explanation
Indices: 17984412--17984840 Score: 388
Period size: 159 Copynumber: 2.7 Consensus size: 159
17984402 CAATCCCCAG
** * * * * * * *
17984412 CTTGCGCATCCTACCTCTCTGACCGGCTGAGCACCCGCACG-TCCGTTTCATTGGTTGGCTTAGA
1 CTTGCGCATTATACCTCTCCGGCCAGCTCAGCACCCGCACGCT-CGTTTCGTGGGTTGGCTTAGG
* * * * * **
17984476 CATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA-CAGAGGGTTCCAACAGTGGGACCGACA
65 CATACGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACCA-AGGGTTGCAACAGCAGGACCGACA
*
17984540 GCACGCAGAGGTGGATCGGACCGATCCTCGA
129 GCACGCAGAGGTGGACCGGACCGATCCTCGA
* * * * *
17984571 CTTGCGCATTATGCCTCTTCGGCCAGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTATACCTCTCCGGCCAGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* ** * ** *
17984636 ATACGGAGTTCA-TTCCTAGTCTAAG-ATCGGATCGGACCAAGGGTTGCGCCAGCAGGATCGACA
66 ATACGGAGTTCATTTCAT-GTCTAAGCCCCAG-TCGGACCAAGGGTTGCAACAGCAGGACCGACA
* * * *
17984699 GCACGTAGCAGG-GGACCGGGCTGAT-CTCTTA
129 GCACGCAG-AGGTGGACCGGACCGATCCTC-GA
* * * *
17984730 TTTGTGCATTCTACCTCTCCGGTC-GACT-AGGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
1 CTTGCGCATTATACCTCTCCGGCCAG-CTCA-GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17984793 GCATACGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACCAAAGGTTG
64 GCATACGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACCAAGGGTTG
17984841 TGGTAGTAGG
Statistics
Matches: 213, Mismatches: 47, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
158 9 0.04
159 192 0.90
160 12 0.06
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (159 bp):
CTTGCGCATTATACCTCTCCGGCCAGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACCAAGGGTTGCAACAGCAGGACCGACAGC
ACGCAGAGGTGGACCGGACCGATCCTCGA
Found at i:17985311 original size:159 final size:159
Alignment explanation
Indices: 17985104--17985507 Score: 404
Period size: 159 Copynumber: 2.5 Consensus size: 159
17985094 TCGACTTACA
* * * * * *
17985104 CATTCTACCTCTCTGGCCGGTTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGG
1 CATTCTACCTCTCCGGCC-GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * ** * ** *
17985169 ATTTCATTCCATGTCTAAGCCCCAG-CTGG-ACCGAGGGTTGTGGCTGCGGGACCGACAGCACGC
65 AGTTCATTCCATGTCTAAGCACCAGAC-GGAACCGAGGGTTGCAGCAGCAAGACCGACAGCACAC
**
17985232 AGAGGG-GGACCAGGTTGATCCCCAGCTTGCG
129 AG-GGGTGGACCAGGCCGATCCCCAGCTTGCG
* * * * * *
17985263 CATTTTACCTCTCCGGCCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGA
1 CATTCTACCTCTCCGGCC-GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * * ** *
17985328 AGTTCATTCCCA-GCCTAAG-ATCAGACGGAACTGAGGGTTGCAGCAGCAAGATTGATAGCACAC
65 AGTTCATT-CCATGTCTAAGCACCAGACGGAACCGAGGGTTGCAGCAGCAAGACCGACAGCACAC
* *
17985391 AGGGGTGGACCGGGCCGATCCCCAGCTTGTG
129 AGGGGTGGACCAGGCCGATCCCCAGCTTGCG
* * * *
17985422 CATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGTTGGTTTCATGGGTTGGCTTAGGCATACGG
1 CATTCTACCTCTCCGGCCG-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
*
17985487 AGTTCATTCTATGTCTAAGCA
65 AGTTCATTCCATGTCTAAGCA
17985508 TACGGAGTTC
Statistics
Matches: 195, Mismatches: 43, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
158 11 0.06
159 180 0.92
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (159 bp):
CATTCTACCTCTCCGGCCGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAGACGGAACCGAGGGTTGCAGCAGCAAGACCGACAGCACACAG
GGGTGGACCAGGCCGATCCCCAGCTTGCG
Found at i:17985403 original size:686 final size:685
Alignment explanation
Indices: 17983958--17985506 Score: 1789
Period size: 686 Copynumber: 2.3 Consensus size: 685
17983948 AAGCATATGG
* * * * * **
17983958 AGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCATGCAG
1 AGTTCATTCCCAGCCTAAGATCAGATCGGACCAAGGGTTGCGCCAGCAAGATCGACAGCACACAG
* * * * * * * * * *
17984023 -GGGGGA-CGGGGCGATCCCCGGCTTGCAG-ATTCTGCCTCTCTGGCCGGCTGAGCACCTGCACA
66 CAGGGGACCGGGCCGATCCCCAGCTTG-TGCATTCTACCTCTCCGACCGACTGAGCACCCGCACG
* * * * * *
17984085 CTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
130 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCCGGACCAAA
* * * *
17984150 GGTTGTGGCAGTAAGACCAGTAGCGGGATCAACAGCATGTAGAGGGGGATCAGGCTGATCCCTAG
195 GGTTGTGGCAGTAAGACCAGCAACGGGATCAACAGCACGTAGA-GGGGACCAGGCTGATCCCTAG
* * * * * *
17984215 CTTGCGCATTATGCCTCTTTGGCCGGCCTCTCCGGCCAGTTGAATGCCCAAACGCTCGTTTCATG
259 CTTACGCATTATGCCTCTTCGACCGGCCTCTCCGGCCAGCTAAACGCCCAAACGCTCGTTTCATG
* * *
17984280 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGA
324 GGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCCTACAGAGTTCATTCCCAGTCTAAGA
* * * * * * *
17984345 TCGCATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCTAGGGGGACTGGGCCAATCCCC
389 TCGAACCGAACCGAGGGTCGCAGCAGCAGGATCCGCAGCACGCTAGGGGGACTGGGCCAATCCCC
* * ** *
17984410 AGCTTGCGCATCCTACCTCTCTGACCGGCTGAGCACCCGCACGTCCGTTTCATTGGTTGGCTTAG
454 AGCTTACACATCCTACCTCTCTGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAG
* *
17984475 ACATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACAGAGGGTTCCAACAGTGGGACCGACA
519 ACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGTTCCAACAGCGGGACCGACA
* * * * *
17984540 GCACGCAGAGGTGGATCGGACCGATCCTCGACTTGCGCATTATGCCTCTTCGGCCAGCTCAGCGC
584 GCACGCAGAGGGGGACCGGACCGATCCCCGACTTGCGCATTATACCTCTCCGGCCAGCTCAGCGC
* *
17984605 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
649 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* * * * **
17984642 AGTTCATTCCTAGTCTAAGATCGGATCGGACCAAGGGTTGCGCCAGCAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGCCTAAGATCAGATCGGACCAAGGGTTGCGCCAGCAAGATCGACAGCACACAG
* ** * **
17984707 CAGGGGACCGGGCTGATCTCTTA-TTTGTGCATTCTACCTCTCCGGTCGACT-AGGCACCCGCAC
66 CAGGGGACCGGGCCGATC-CCCAGCTTGTGCATTCTACCTCTCCGACCGACTGA-GCACCCGCAC
*
17984770 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACCAA
129 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCCGGACCAA
* * * *
17984835 AGGTTGTGGTAGTAGGACCAGCAACGGGATCGACAGCACGCTTAGA-GGGACCGGGCTGAT-CCT
194 AGGTTGTGGCAGTAAGACCAGCAACGGGATCAACAGCACG--TAGAGGGGACCAGGCTGATCCCT
* * * * * * **
17984898 CAGGTTACGGATTATGCCT-TTCCGATCGGCCTCTCCGGTCGGCTAAACGTCCGCACGCTCGTTT
257 -AGCTTACGCATTATGCCTCTT-CGACCGGCCTCTCCGGCCAGCTAAACGCCCAAACGCTCGTTT
* * * *
17984962 CATTGGTTGACTTAGGCATATGGAGTTCATTCCAAGTCTAAGCCTATAGAGTTCATTCCCAGTCT
320 CATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCCTACAGAGTTCATTCCCAGTCT
* * * *
17985027 AAGATCGAACCGAACTGAGGGTCGCAGCAGTAGGATCCGCAGCACGC-AGGGGGGACTGGGTCGA
385 AAGATCGAACCGAACCGAGGGTCGCAGCAGCAGGATCCGCAGCACGCTA-GGGGGACTGGGCCAA
* * * *
17985091 TCCTC-GACTTACACATTCTACCTCTCTGGCCGGTTGAGCACCCGCACACCCGTTTCATGGGTTG
449 TCCCCAG-CTTACACATCCTACCTCTCTGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTG
* * * * **** *
17985155 GCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCTGCGGGA
513 GCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGTTCCAACAGCGGGA
** *
17985220 CCGACAGCACGCAGAGGGGGACCAGG-TTGATCCCC-AGCTTGCGCATTTTACCTCTCCGGCCAG
578 CCGACAGCACGCAGAGGGGGACC-GGACCGATCCCCGA-CTTGCGCATTATACCTCTCCGGCCAG
*
17985283 CTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGA
641 CTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
** * *
17985328 AGTTCATTCCCAGCCTAAGATCAGA-CGGAACTGAGGGTTGCAG-CAGCAAGATTGATAGCACAC
1 AGTTCATTCCCAGCCTAAGATCAGATCGG-ACCAAGGGTTGC-GCCAGCAAGATCGACAGCACAC
* * *
17985391 AG-GGGTGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCA
64 AGCAGG-GGACCGGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGACCGACTGAGCACCCGCA
* * *
17985455 CGTTGGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TTCTATGTCTAAGC
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTC-ATGTCTAAGC
17985507 ATACGGAGTT
Statistics
Matches: 724, Mismatches: 122, Indels: 36
0.82 0.14 0.04
Matches are distributed among these distances:
684 57 0.08
685 25 0.03
686 633 0.87
687 5 0.01
688 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (685 bp):
AGTTCATTCCCAGCCTAAGATCAGATCGGACCAAGGGTTGCGCCAGCAAGATCGACAGCACACAG
CAGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCCGGACCAAAG
GTTGTGGCAGTAAGACCAGCAACGGGATCAACAGCACGTAGAGGGGACCAGGCTGATCCCTAGCT
TACGCATTATGCCTCTTCGACCGGCCTCTCCGGCCAGCTAAACGCCCAAACGCTCGTTTCATGGG
TTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCCTACAGAGTTCATTCCCAGTCTAAGATC
GAACCGAACCGAGGGTCGCAGCAGCAGGATCCGCAGCACGCTAGGGGGACTGGGCCAATCCCCAG
CTTACACATCCTACCTCTCTGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGAC
ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGTTCCAACAGCGGGACCGACAGC
ACGCAGAGGGGGACCGGACCGATCCCCGACTTGCGCATTATACCTCTCCGGCCAGCTCAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
Found at i:17985509 original size:26 final size:26
Alignment explanation
Indices: 17985479--17985531 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17985469 GTTGGCTTAG
17985479 GCATACGGAGTTCA-TTCTATGTCTAA
1 GCATACGGAGTTCATTTCTA-GTCTAA
17985505 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATTTCTAGTCTAA
17985531 G
1 G
17985532 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCTAGTCTAA
Found at i:17985956 original size:11 final size:13
Alignment explanation
Indices: 17985931--17985963 Score: 52
Period size: 11 Copynumber: 2.7 Consensus size: 13
17985921 ATTTGGGGAC
17985931 AAAAATCTTTCTA
1 AAAAATCTTTCTA
17985944 AAAAAT-TTT-TA
1 AAAAATCTTTCTA
17985955 AAAAATCTT
1 AAAAATCTT
17985964 GAACCGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.42
12 5 0.26
13 6 0.32
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (13 bp):
AAAAATCTTTCTA
Found at i:17986238 original size:26 final size:26
Alignment explanation
Indices: 17986202--17986254 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17986192 GTTGACTTAG
17986202 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17986228 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17986254 G
1 G
17986255 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17986668 original size:111 final size:111
Alignment explanation
Indices: 17986474--17986682 Score: 276
Period size: 111 Copynumber: 1.9 Consensus size: 111
17986464 GACCCGGTTG
* ** * * *
17986474 ATCCCTGGCTTGCGCATTATGCCTCTTTGGCCGACTCAGCACCCACACGCTCTTTTCGTGGGTTG
1 ATCCCTGGCTTGCGCATTATACCTCTCCGACCGACTAAGCACCCACACGCTCGTTTCGTGGGTTG
* *
17986539 ACTTATGCTTACAAAGTTCATTCC-TAGTCTAAGATTGGATCGGGCC
66 ACTTAGGCATACAAAGTTCATTCCAT-GTCTAAGATTGGATCGGGCC
* * *
17986585 ATCCCTGGCTTGCGCATTCTACCTCTCCGACCGACTAAGCATCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCTGGCTTGCGCATTATACCTCTCCGACCGACTAAGCACCCACACGCTCGTTTCGTGGGTTG
* **
17986650 GCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 ACTTAGGCATACAAAGTTCATTCCATGTCTAAG
17986683 CATATGGAGT
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
111 82 0.99
112 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.22, T:0.30
Consensus pattern (111 bp):
ATCCCTGGCTTGCGCATTATACCTCTCCGACCGACTAAGCACCCACACGCTCGTTTCGTGGGTTG
ACTTAGGCATACAAAGTTCATTCCATGTCTAAGATTGGATCGGGCC
Found at i:17986692 original size:26 final size:26
Alignment explanation
Indices: 17986656--17986708 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17986646 GTTGGCTTAG
17986656 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17986682 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17986708 G
1 G
17986709 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.