Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 159 of 402
Found at i:17987561 original size:26 final size:26
Alignment explanation
Indices: 17987525--17987577 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17987515 GTTGGCTTAG
17987525 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17987551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17987577 G
1 G
17987578 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17988366 original size:26 final size:25
Alignment explanation
Indices: 17988336--17988387 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
17988326 GTTGGCTTAG
17988336 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
17988362 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
17988387 G
1 G
17988388 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:17988751 original size:26 final size:26
Alignment explanation
Indices: 17988717--17988767 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17988707 TGACTTAGGC
*
17988717 ATACGGAGTTCA-TCCGTAGTCTAAGT
1 ATACAGAGTTCATTCC-TAGTCTAAGT
17988743 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCTAGTCTAAG
17988768 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCTAGTCTAAGT
Found at i:17989035 original size:159 final size:159
Alignment explanation
Indices: 17988826--17989247 Score: 444
Period size: 159 Copynumber: 2.7 Consensus size: 159
17988816 GGACCGGCCT
*
17988826 GATCCCCGGCTTGCACATTCTGCCTCTCCGACCGG-CTAAGCGCCCGCACGCCCATTTCATGGGT
1 GATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCCCAA-CGCCCGCACGCCCATTTCATGGGT
* * ** *
17988890 TGGCTTCGACATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCTAA-GGTTGTGGCAGC
65 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGACCGGATC-AAGGGTTGCGGCAGC
** *
17988953 GGGACTGACAGCACGCAGTAGCG-GACCGGGTC
129 AAGACTGACAGCAAGCAG--GCGAGACCGGGTC
* * * *
17988985 GATCCCCGACTTGCACATTATGCCTCTCCGACCGGCCCAACGCCCGCACGCTCATTTAATGGGTT
1 GATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCCCAACGCCCGCACGCCCATTTCATGGGTT
* * **** *
17989050 GCCTTAGGCATACAAAGTTCATTCCCA-GTCTAAG-ATTGGACCGGATCAAGGGTTGCGGTAGCA
66 GGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAGACCGGATCAAGGGTTGCGGCAGCA
* * *
17989113 AGATTGATAGCAAGCAGGGGAGACCGGGTC
130 AGACTGACAGCAAGCAGGCGAGACCGGGTC
* ** * * * ** * *
17989143 GATCCCTGGCTTGTGCATTCTGCCTTTCCGATCGACTGAGCCCCCGCAC-CCTCATTTCATGGGT
1 GATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCCCAACGCCCGCACGCC-CATTTCATGGGT
17989207 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG
65 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG
17989248 TTGGACCAAG
Statistics
Matches: 212, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 6 0.03
158 89 0.42
159 111 0.52
160 6 0.03
ACGTcount: A:0.20, C:0.31, G:0.26, T:0.23
Consensus pattern (159 bp):
GATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCCCAACGCCCGCACGCCCATTTCATGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGACCGGATCAAGGGTTGCGGCAGCAA
GACTGACAGCAAGCAGGCGAGACCGGGTC
Found at i:17989436 original size:26 final size:26
Alignment explanation
Indices: 17989399--17989451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17989389 GTTGACTTAG
*
17989399 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17989425 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17989451 G
1 G
17989452 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17989950 original size:26 final size:26
Alignment explanation
Indices: 17989899--17989951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17989889 GTTGGCTTAG
* *
17989899 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGAAGTTCATTCCAAGCCTAA
*
17989925 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGCCTAA
17989951 G
1 G
17989952 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGCCTAA
Found at i:17990385 original size:881 final size:878
Alignment explanation
Indices: 17989197--17990832 Score: 2149
Period size: 881 Copynumber: 1.9 Consensus size: 878
17989187 CGCACCCTCA
**
17989197 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTT
* *
17989262 GTGACAGCAGGACCGGCAACAGGATCGGCAGCATGCAAAGGGGGATCGAGCTGATCCCTGGCTTA
66 GTGACAGCAGGACCAGCAACAGGATCGGCAGCACGCAAAGGGGGATCGAGCTGATCCCTGGCTTA
** * * **
17989327 CGCATTATGCCTCTCCATCCGGCCTCTTTGGTTGGCTGAGCTCCCGCACGCTTGTTTTGTGGGTT
131 CGCATTATGCCTCTCCATCCGGCCTCTCCGGTCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTT
17989392 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
196 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
* * * ** * *
17989457 ACCGGACCGAGGGTTATGACAGTAAGATAGGTAGCACGCAGGGGGGATTGGGCTGATCCTCGGCT
261 ACCGAACCGAGGGTTACGACAGCAAGATAGACAGCACGCAGGGGGGATCGGGCTGATCCCCGGCT
* * * * * * * * *
17989522 TGTGCATTCTGCCTCTCTGGCCGGCTGAGTGCCTGCATGCCTGTTTCGTGGGTTGGCTTAGGCAT
326 TGCGCATTCTACCTCTCCGGCCCGC-GAGCGCCCGCACGCCTGTTTCATAGGTTGGCTTAGGCAT
* * * *
17989587 AGGGAGTTCATT-TCATGTCTAAGCCCCTGCCGGACTGAA-GGTTGTGGCTGTGGGACCGATAGC
390 AGGGAGTTCATTCT-ATGTCTAAGCCCCAGCCGGAC-CAAGGGTTGTGGCAGCGGGACCGATAGC
* * *
17989650 ACGTAGAAGGGG-CCAGGCCGATCCCCGGCTTGCGTATTATGCCTCTCCGGCTGGCTCAGTGCCC
453 ACGTAGAAGGGGACCAGGCCGATCCCCGACTTACGGATTATGCCTCTCCGGCTGGCTCAGTGCCC
* *
17989714 ACACGTTCATTTCGTGGGTTGACTTAGGCATACTGAGTTAATTCCCAGTCTAAAATCAGACCGGA
518 ACACGCTCATTTCGTGGGTTGACTTAGGCATA-GGAGTTAATTCCCAGTCTAAAATCAGACCGGA
* * * * *
17989779 CCAAGGGTTGTGGCAACA-A-GATCGACAACACGTA-GGGGGCATCGGGCTAATCCTCGGCTTGT
582 CCAAGGGTT-T--CAACAGAGGATCAACAACACGCATGGGGG-ACCGGGC-AATCCCCGGCTTGC
* * * * * *
17989841 GCATTCTACCTCTCTAGCTGATTGAGCCCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
642 GCATTCTACCTCTCTAACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACA
*
17989906 GAGTTCATTCCATGCCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCAGATCGGACTAAGGGT
707 GAGGTCATTCCATGCCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCAGATCGGACTAAGGGT
17989971 TGCAACAGCAGGACCAGCAGCAGGATCGGTAGCACATAAGAGGGGACCGGGCTGATCCTCGGCTT
772 TGCAACAGCAGGACCAGCAGCAGGATCGGTAGCACATAAGAGGGGACCGGGCTGATCCTCGGCTT
17990036 ACGCATTCTGCCTCTCTGATCGGCTAAGTGCCCGTACGCTTG
837 ACGCATTCTGCCTCTCTGATCGGCTAAGTGCCCGTACGCTTG
* * * *
17990078 TTTCGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTT
* * * * * * * *
17990143 GTGGCAGCAGGACTAGTAGCGGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCCCT-GCTT
66 GTGACAGCAGGACCAGCAACAGGATCGGCAGCACGCAAAGGGGGATCGAGCTGAT-CCCTGGCTT
*
17990207 ACGCATTATGCCTCTCCGA-CCGGCCTCTCCGGTCGGTTGAGCTCCCGCACGCTCGTTTCATGGG
130 ACGCATTATGCCTCTCC-ATCCGGCCTCTCCGGTCGGCTGAGCTCCCGCACGCTCGTTTCATGGG
* * *
17990271 TTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCTTAC-AGAGTTCATTCCTAGTCTAAGAT
194 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGAT
** * * *
17990335 TGGACCGAACTGAGGGTTACGACAGCAGGATCA-ACAGCGCGCAGGGGGGATCGGGCTGATCCCC
258 CAGACCGAACCGAGGGTTACGACAGCAAGAT-AGACAGCACGCAGGGGGGATCGGGCTGATCCCC
17990399 GGCTTGCGCATTCTACCTCTCCGGCCCGCGAGCGCCCGCACGCCTGTTTCATAGGTTGGCTTAGG
322 GGCTTGCGCATTCTACCTCTCCGGCCCGCGAGCGCCCGCACGCCTGTTTCATAGGTTGGCTTAGG
* * * ** * *
17990464 TATAGGGAGTTCATTCTATGTCTAAGGCCCAGCTGGACCAAGGGTTGTGGCAGCGTTACTGGTAG
387 CATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGATAG
* * * * * *
17990529 CATGTAGAGGGGGATCGGGTCGATCCCCGACTTACGGATTATGCCTCTTCGGCTGGCTCAGTGCC
452 CACGTAGAAGGGGACCAGGCCGATCCCCGACTTACGGATTATGCCTCTCCGGCTGGCTCAGTGCC
* * * * * *
17990594 CGCACGCTCGTTTCGTGGGTTGACTTATGCATAGGAGTTCATTCCTAGTCTAAGATCAGACCGGA
517 CACACGCTCATTTCGTGGGTTGACTTAGGCATAGGAGTTAATTCCCAGTCTAAAATCAGACCGGA
* * * * * * *
17990659 TCGATGGTTTCAATAGTAGGATCAATAGCACGCATGGGGGACCGGGCCATCCCCGGCTTGCGCAT
582 CCAAGGGTTTCAACAG-AGGATCAACAACACGCATGGGGGACCGGGCAATCCCCGGCTTGCGCAT
* * ** *
17990724 TCTGCCTCTCTAACCGGCTGAGCACCCTTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGG
646 TCTACCTCTCTAACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGG
* ** *
17990789 TCATTCCTTGTTTAAGCATACGAAGTTCATTCCTAGTCTAAGAT
711 TCATTCCATGCCTAAGCATACGAAGTTCATTCCAAGTCTAAGAT
17990833 TTTGAGCAAC
Statistics
Matches: 641, Mismatches: 103, Indels: 24
0.83 0.13 0.03
Matches are distributed among these distances:
877 4 0.01
879 112 0.17
880 143 0.22
881 376 0.59
882 6 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (878 bp):
TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTT
GTGACAGCAGGACCAGCAACAGGATCGGCAGCACGCAAAGGGGGATCGAGCTGATCCCTGGCTTA
CGCATTATGCCTCTCCATCCGGCCTCTCCGGTCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
ACCGAACCGAGGGTTACGACAGCAAGATAGACAGCACGCAGGGGGGATCGGGCTGATCCCCGGCT
TGCGCATTCTACCTCTCCGGCCCGCGAGCGCCCGCACGCCTGTTTCATAGGTTGGCTTAGGCATA
GGGAGTTCATTCTATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGATAGCACG
TAGAAGGGGACCAGGCCGATCCCCGACTTACGGATTATGCCTCTCCGGCTGGCTCAGTGCCCACA
CGCTCATTTCGTGGGTTGACTTAGGCATAGGAGTTAATTCCCAGTCTAAAATCAGACCGGACCAA
GGGTTTCAACAGAGGATCAACAACACGCATGGGGGACCGGGCAATCCCCGGCTTGCGCATTCTAC
CTCTCTAACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGGTCATT
CCATGCCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCAGATCGGACTAAGGGTTGCAACAGC
AGGACCAGCAGCAGGATCGGTAGCACATAAGAGGGGACCGGGCTGATCCTCGGCTTACGCATTCT
GCCTCTCTGATCGGCTAAGTGCCCGTACGCTTG
Found at i:17991637 original size:26 final size:26
Alignment explanation
Indices: 17991601--17991653 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17991591 GTTGGCTTAG
17991601 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17991627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17991653 G
1 G
17991654 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17992181 original size:356 final size:363
Alignment explanation
Indices: 17991588--17992276 Score: 872
Period size: 356 Copynumber: 1.9 Consensus size: 363
17991578 ACCCATTTCC
* * * **
17991588 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCACACGGAGTTCATCCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAA
* * *
17991653 GATCAGACCGGATCGGGGGTTACGACAGCAGGACCAGCAACAGGATCGATAGCACGTAGGGGGGG
66 GATCAGACCGGATCGAGGGTT-----AGCAGGA-CAGCAACAGGATCGATAGCACGCAGGCGGGG
* * * * * *
17991718 ATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACACTCATTT
125 ATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTAAGCACCCACACACCCATTT
* * *
17991783 CGTTGGTTGGCTTAGCCATACGGAGTTCATTCCATCTCTAAGCCCCAGCTGGACCGAGGGTTATG
190 CATGGGTTGGCTTAGCCATACGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAGGGTTATG
* * * * * * *
17991848 GCAGCAAGACCAGCAGCATGCGGAGGGGGACCGGGCTGATCCCCGGTTTATGCATTATGCCTCTC
255 GCAGCAAGACCAGCAGCACGCAGAAGGGGACCGGGCCGAACCCCGGCTTACGCATTATGCCTCTC
17991913 CGGTCGGCCTCTTCGATCGACTGAGTGCCCGCACGCTCGTTTAA
320 CGGTCGGCCTCTTCGATCGACTGAGTGCCCGCACGCTCGTTTAA
17991957 TGGGTTGACTTAGGCACACGGAGTTCATCCCCA-GTCTAAGCATACAAAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCACACGGAGTTCAT-CCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTA
* * *
17992021 AGATCAGACTGGATCGAGGGTT-GC-GG-TAGC-A-A-GATCGATAGTACGCA-GCGGGGATCGG
65 AGATCAGACCGGATCGAGGGTTAGCAGGACAGCAACAGGATCGATAGCACGCAGGCGGGGATCGG
* * * * *
17992079 GCCGATCCCCGGCTTACGCATTCTACCTTTCCGATCGGCTAAGCACCCATACGCCCATTTCATGG
130 GCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTAAGCACCCACACACCCATTTCATGG
* * * *
17992144 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
195 GTTGGCTTAGCCATACGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGC
* *** * * *
17992209 GAGATTGGCAGCACGCAGAAGGGGATCGGGCCGAACCCCGGCTTGCGCATTATGCCTCTTCGGTC
260 AAGACCAGCAGCACGCAGAAGGGGACCGGGCCGAACCCCGGCTTACGCATTATGCCTCTCCGGTC
17992274 GGC
325 GGC
17992277 TCAGTGCCTG
Statistics
Matches: 276, Mismatches: 43, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
356 176 0.64
357 13 0.05
358 1 0.00
359 1 0.00
360 3 0.01
362 2 0.01
363 2 0.01
369 75 0.27
370 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (363 bp):
TGGGTTGACTTAGGCACACGGAGTTCATCCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAA
GATCAGACCGGATCGAGGGTTAGCAGGACAGCAACAGGATCGATAGCACGCAGGCGGGGATCGGG
CCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTAAGCACCCACACACCCATTTCATGGG
TTGGCTTAGCCATACGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCA
AGACCAGCAGCACGCAGAAGGGGACCGGGCCGAACCCCGGCTTACGCATTATGCCTCTCCGGTCG
GCCTCTTCGATCGACTGAGTGCCCGCACGCTCGTTTAA
Found at i:17992459 original size:158 final size:158
Alignment explanation
Indices: 17992004--17992492 Score: 477
Period size: 158 Copynumber: 3.1 Consensus size: 158
17991994 AAGCATACAA
* * * *
17992004 AGTTCATTCCCAGTCTAAGATCAGACTGGA-TCGAGGGTTGCGGTAGCAAGATCGATAGTACGC-
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * * * *
17992067 AGCGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTTTCCGATCGGCTAAGCACCCATACG
65 AG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCACCCGTACG
* * *
17992132 CCCATTTCATGGGTTGGCTTAGGCATAGGG
129 CTCATTTCGTGGGTTGGCTTAGGCATAAGG
** * * * **
17992162 AGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGC-GAGATTGGCAGCACG
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAG-GATCGATAGCACG
* * * * ** *
17992224 CAGAAGGGGATCGGGCCGAACCCCGGCTTGCGCATTATGCCTCT-TCGGTCGGCTCAGTGCCTGT
63 CA-AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGTCGGCTAAGCACCCGT
* * * *
17992288 ACACTCATATCGTGGGTTGACTTATGCATAAGG
126 ACGCTCATTTCGTGGGTTGGCTTAGGCATAAGG
* * * *
17992321 AGGTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCAATAGCAAGCAA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACGCAA
* * * * * * *
17992386 GGGGGATCGGGTCGGTCCTCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCT
66 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCACCCGTACGCT
* *
17992451 CATTTCGTGGGTTGGTTTAGGCATATGG
131 CATTTCGTGGGTTGGCTTAGGCATAAGG
17992479 AGTTCATTCCCAGT
1 AGTTCATTCCCAGT
17992493 GTAATATTTT
Statistics
Matches: 258, Mismatches: 62, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 131 0.51
159 119 0.46
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACGCAA
GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCACCCGTACGCT
CATTTCGTGGGTTGGCTTAGGCATAAGG
Found at i:17993695 original size:26 final size:26
Alignment explanation
Indices: 17993666--17993718 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17993656 GTTGGCTTAG
*
17993666 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
17993692 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
17993718 G
1 G
17993719 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:17994076 original size:26 final size:26
Alignment explanation
Indices: 17994047--17994099 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17994037 GTTGACTTAG
*
17994047 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17994073 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17994099 G
1 G
17994100 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17998257 original size:11 final size:13
Alignment explanation
Indices: 17998232--17998264 Score: 52
Period size: 11 Copynumber: 2.7 Consensus size: 13
17998222 ATTTGGGGAC
17998232 AAAAATCTTTCTA
1 AAAAATCTTTCTA
17998245 AAAAAT-TTT-TA
1 AAAAATCTTTCTA
17998256 AAAAATCTT
1 AAAAATCTT
17998265 GAACTACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.42
12 5 0.26
13 6 0.32
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (13 bp):
AAAAATCTTTCTA
Found at i:17998889 original size:159 final size:159
Alignment explanation
Indices: 17998591--17998893 Score: 369
Period size: 159 Copynumber: 1.9 Consensus size: 159
17998581 GTAGGATCGG
* **** * * *
17998591 CAGCACGCAGGGGGGATCGGGCTGATCTTTGGCTTGCGCATTTTGCCTCTCTGGCCGGTTAAGCG
1 CAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGTTAAGCG
* * * * *
17998656 CCCGCACGTCTGTGTTTGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
66 CCCGCACGTCTGTGTTCGTGCGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGC
** *
17998721 CTGATCGAGGGTTGTGGCAGCGGGACCGA
131 CAAACCGAGGGTTGTGGCAGCGGGACCGA
*
17998750 CAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGTTCAGC
1 CAGCACGCAG-GGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGTTAAGC
* * * *
17998815 GCCCGCATG-CTCGT-TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAA-CATCA
65 GCCCGCACGTCT-GTGTTCGTGCGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCA
17998877 GACCAAACCGAGGGTTG
129 G-CCAAACCGAGGGTTG
17998894 CGGTAGCAAG
Statistics
Matches: 120, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
158 4 0.03
159 61 0.51
160 55 0.46
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
CAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGTTAAGCG
CCCGCACGTCTGTGTTCGTGCGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGC
CAAACCGAGGGTTGTGGCAGCGGGACCGA
Found at i:17998912 original size:159 final size:159
Alignment explanation
Indices: 17998591--17999038 Score: 418
Period size: 158 Copynumber: 2.8 Consensus size: 159
17998581 GTAGGATCGG
* **** * * *
17998591 CAGCACGCAGGGGGGATCGGGCTGATCTTTGGCTTGCGCATTTTGCCTCTCTGGCCGGTTAAGCG
1 CAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGTTAAGCG
* * * **
17998656 CCCGCACG-TCTGTGTTTGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
66 CCCGCACGCTC-GT-TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAG
** * * ** *
17998720 -CCTGATCGAGGGTTGTGGCAGCGGGACCGA
129 ACCAAACCGAGGGTTGCGGCAGCAAGACCAA
*
17998750 CAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGTTCAGC
1 CAGCACGCAG-GGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGTTAAGC
* * * *
17998815 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAA-CATCAGA
65 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGA
* *
17998879 CCAAACCGAGGGTTGCGGTAGCAAGATCAA
130 CCAAACCGAGGGTTGCGGCAGCAAGACCAA
* * * * * * * * * * * *
17998909 CAGCACGTAGGAGAGACC-GGATCGGTCCCCAACTTGTGCATTCTACCTCTCCGGCTAGCTGAGC
1 CAGCACGCAGGGGGGACCGGGCT-GATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGTTAAGC
* * * * * *
17998973 ACCGGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTCCATTCAATGTCTAAGCATACAG
65 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT-CAG
17999038 A
129 A
17999039 GTTCATTCCC
Statistics
Matches: 234, Mismatches: 49, Indels: 11
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 90 0.38
159 80 0.34
160 59 0.25
161 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGTTAAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGAC
CAAACCGAGGGTTGCGGCAGCAAGACCAA
Found at i:17999684 original size:159 final size:157
Alignment explanation
Indices: 17999432--18000848 Score: 1009
Period size: 159 Copynumber: 8.9 Consensus size: 157
17999422 GATCGGACCA
* * * * * * * *
17999432 GATCGAGGGTTGCGACAGCAAGATCGATAGCACGCAAGAGGGACCGGGCTGATCCCTGGCTTGCG
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGC-AGGGGGATCAGGCCGATCCCTGGCTTGCG
* * * * * *
17999497 CATTCTGCCTCTTCTA-CTGGCTGGGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
65 CATTCTGCCTCTTCGATC-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACG
17999561 GAGTTCATTCCATGTCTAAGCCCCATCCG
129 GAGTTCATTCCATGTCTAAGCCCCATCCG
* * * * * * *
17999590 GATCGAGGGCTGTGGTAGCAGGACCAACAGCACGCAGGGAGGGACCAGGGCGATCCCTGGCTTGT
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-GG-GGGATCAGGCCGATCCCTGGCTTGC
* * * * * * * * * *
17999655 GCATTATGCCTCTTCGATCGGCTCAGCACCTGCACGCTCATTTTGGGGGTTGACTTATGCATACA
64 GCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACG
* ** *
17999720 GAGTTCATTCTCA-GTCTAAGATCGGAT-CA
129 GAGTTCATTC-CATGTCTAAG-CCCCATCCG
** ** * *
17999749 GATCGAGGGTTACGATAGCAGGATCGACAGCACGCAGGGGGGATC-GAGCCGATCCCCGACTTGC
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-GGGGGATCAG-GCCGATCCCTGGCTTGC
* * * * * * *
17999813 GCATTCTACCTCTTCGACCAGCTGAGCACCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGG
64 GCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACG
17999878 GAGTTCATTCCATGTCTAAGCCCCAAT-CG
129 GAGTTCATTCCATGTCTAAGCCCC-ATCCG
* * * * * * * *
17999907 GATCGAGGGTTGTGGCAACGGGACCGGCAGCACACAGAGGGGGA-CTGAGCCAATCCCCGGCTTG
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGC--AGGGGGATCAG-GCCGATCCCTGGCTTG
* ** * * * * * * *
17999971 CGCATTATGCCTCTTCGGCCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTATGCATAC
63 CGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAC
* * * ** *
18000036 AGAGTTTATTTCCA-ATCTAAG-ATCAGACC-
128 GGAGTTCA-TTCCATGTCTAAGCCCCA-TCCG
*
18000065 GAACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGATCAGGCCGATCCCTGGCTTGC
1 GATC-GAGGGTTGTGGCAGCAGGATCGACAGCACGC-AGGGGGATCAGGCCGATCCCTGGCTTGC
* * * * * * * ** *
18000130 GCATTCTACCTCTTCGGTCAGCTGAGCGCCTGTACACCCATTTTGTTCGTTGGCTTAGGCATAGG
64 GCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACG
*
18000195 GAGTTCATTCGATGTCTAAGCCCCAGT-CG
129 GAGTTCATTCCATGTCTAAGCCCCA-TCCG
* * * ** * *
18000224 GATCAAGGGTTGTGGCAGCGGGACCGGTAGCACGTCGAGGGGGATCAGGTCGAT-CCTCGGCTTA
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACG-C-AGGGGGATCAGGCCGATCCCT-GGCTTG
* * * * * * * * *
18000288 TGCATTATGCCTCTTCGATCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATAT
63 CGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAC
* ** * * *
18000353 AGAGTTCATTCCCA-GTCTAAGATCGAACCA
128 GGAGTTCATT-CCATGTCTAAGCCCCATCCG
** * * * * *
18000383 GATCGAGGGTTGCAGCAGTAAGATCGACAGCACGTAAGGGGATCAGGCCGAT-CCTCGGCTTACG
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGATCAGGCCGATCCCT-GGCTTGCG
* * * * * * *
18000447 CATTCTACCTTTTTGATCGGTTGAGTGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATAGGG
65 CATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGG
* *
18000512 AGTTCATTCCATGTCTAAGCCCTAGCCG
130 AGTTCATTCCATGTCTAAGCCCCATCCG
* * ** * * * * *
18000540 GATCGATGGTTGTGGCAGCAAGATCGGTAGCATGCAGAGGCAGATCGGGCTGATCCCCGGCTTGC
1 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GG-GGATCAGGCCGATCCCTGGCTTGC
* * * * ** * * * * * *
18000605 ACATTTTGCCTCTTCG-GCTGGCTCAATGCCGGCACGCTCGTTTCATGGGTTGACTTATGCATAC
64 GCATTCTGCCTCTTCGATC-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAC
** * *
18000669 GGAGTTCATTCC-TAGTCTAAG-ATCAGACCA
128 GGAGTTCATTCCAT-GTCTAAGCCCCA-TCCG
* ** *
18000699 GA-CTGAGGGTTGTGGCAGTCA-GATTGACAGCACGCAGGTGGGATTGGGCCGATCCCCGGCTTG
1 GATC-GAGGGTTGTGGCAG-CAGGATCGACAGCACGCAGG-GGGATCAGGCCGATCCCTGGCTTG
* * * * *
18000762 CGCATTCTACCTCTCCGACCGGCTGAGCGCCCGTAC-CCTCGTTTCGTGGGTTGGCTTAGGCATA
63 CGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCC-CATTTCGTGGGTTGGCTTAGGCATA
*
18000826 CGGAGTTCCTTCCATGTCTAAGC
127 CGGAGTTCATTCCATGTCTAAGC
18000849 ATACGGAGTT
Statistics
Matches: 980, Mismatches: 242, Indels: 73
0.76 0.19 0.06
Matches are distributed among these distances:
156 3 0.00
157 136 0.14
158 352 0.36
159 471 0.48
160 18 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGATCAGGCCGATCCCTGGCTTGCGC
ATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCATCCG
Found at i:17999978 original size:317 final size:317
Alignment explanation
Indices: 17999396--18000848 Score: 1624
Period size: 317 Copynumber: 4.6 Consensus size: 317
17999386 CCTAGTATAA
* *
17999396 GCATACAGAGTTCATTCGCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAAGATCGATA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAAGATCGACA
* * * * * * * * * *
17999461 GCACGCAAGAGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCTACTGGCTGGGCACC
66 GCACGCAAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCC
*
17999526 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-ATCCG
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAT-CG
* * ** * * *
17999590 GATCGAGGGCTGTGGTAGCAGGACCAACAGCACGCAG-GGAGGGACCAGGGCGATCCCTGGCTTG
195 GATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGG-GGGATCAGGCCGATCCCCGGCTTG
* * ** * *
17999654 TGCATTATGCCTCTTCGATCGGCTCAGCACCTGCACGCTCATTTTGGGGGTTGACTTAT
259 CGCATTATGCCTCTTCGATCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAT
* * * *
17999713 GCATACAGAGTTCATTCTCAGTCTAAGATCGGATCAGATCGAGGGTTACGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAAGATCGACA
* * * *
17999778 GCACGCAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTTCGACCAGCTGAGCACC
66 GCACGCAAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCC
*
17999843 CGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGG
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGG
* * * * *
17999908 ATCGAGGGTTGTGGCAACGGGACCGGCAGCACACAGAGGGGGA-CTGAGCCAATCCCCGGCTTGC
196 ATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGATCAG-GCCGATCCCCGGCTTGC
**
17999972 GCATTATGCCTCTTCGGCCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAT
260 GCATTATGCCTCTTCGATCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAT
* * * * * * *
18000030 GCATACAGAGTTTATT-TCCAATCTAAGATCAGACC-GAACTGAGGGTTGTGGCAGCAGGATCGA
1 GCATACAGAGTTCATTCT-CAGTCTAAGATCGGACCAGATC-GAGGGTTGCGACAGCAAGATCGA
* ** *
18000093 CAGCACGCAAGGGGGATC-AGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGGTCAGCTGAGC
64 CAGCACGCAAGGGGGATCGA-GCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGC
* * * * * ** * *
18000157 GCCTGTACACCCATTTTGTTCGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGT
128 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAT
* * * * *
18000222 CGGATCAAGGGTTGTGGCAGCGGGACCGGTAGCACGTC-GAGGGGGATCAGGTCGATCCTCGGCT
193 CGGATCGAGGGTTGTGGCAGCAGGACCGGCAGCACG-CAGAGGGGGATCAGGCCGATCCCCGGCT
** *
18000286 TATGCATTATGCCTCTTCGATCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAG
257 TGCGCATTATGCCTCTTCGATCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAT
* * * *
18000347 GCATATAGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGC-AGCAGTAAGATCGAC
1 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCAGATCGAGGGTTGCGA-CAGCAAGATCGAC
* * * * * * * *
18000411 AGCACGTAA-GGGGATC-AGGCCGATCCTCGGCTTACGCATTCTACCTTTTTGATCGGTTGAGTG
65 AGCACGCAAGGGGGATCGA-GCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCG
** * **
18000474 CCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATC
* * * * * ** * *
18000539 GGATCGATGGTTGTGGCAGCAAGATCGGTAGCATGCAGAGGCAGATCGGGCTGATCCCCGGCTTG
194 GGATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTG
* * * * * * * *
18000604 CACATTTTGCCTCTTCG-GCTGGCTCAATGCCGGCACGCTCGTTTCATGGGTTGACTTAT
259 CGCATTATGCCTCTTCGATC-AGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAT
* * * * *
18000663 GCATACGGAGTTCATTC-CTAGTCTAAGATCAGACCAGA-CTGAGGGTTGTGGCAGTC-AGATTG
1 GCATACAGAGTTCATTCTC-AGTCTAAGATCGGACCAGATC-GAGGGTTGCGACAG-CAAGATCG
* * *
18000725 ACAGCACGC-AGGTGGGATTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAG
63 ACAGCACGCAAGG-GGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAG
* * *
18000789 CGCCCGTAC-CCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGTCTAAGC
127 CGCCCGCACGCC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18000849 ATACGGAGTT
Statistics
Matches: 960, Mismatches: 155, Indels: 42
0.83 0.13 0.04
Matches are distributed among these distances:
315 5 0.01
316 263 0.27
317 682 0.71
318 10 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (317 bp):
GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAAGATCGACA
GCACGCAAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGG
ATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCG
CATTATGCCTCTTCGATCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAT
Found at i:18000711 original size:633 final size:630
Alignment explanation
Indices: 17999396--18000848 Score: 1780
Period size: 633 Copynumber: 2.3 Consensus size: 630
17999386 CCTAGTATAA
* * * *
17999396 GCATACAGAGTTCATTCGCAGTCTAAGATCGGACCAGA-TCGAGGGTTGCGACAGCAAGATCGAT
1 GCATACAGAGTTCATTC-CAGTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAGC-AGATCGAC
* * * * * *
17999460 AGCACGCAAGAGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTC-TACTGGCTGGGCA
63 AGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGT-C-GGCTGAGCG
* *
17999524 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCC
126 CCCGTAC-CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCC
* * *
17999589 GGATCGAGGGCTGTGGTAGCAGGACCAACAGCACGCAGGGAGGGACCAGGGCGATCCCTGGCTTG
190 GGATCAAGGGCTGTGGCAGCAGGACCAACAGCACGCAGGGAGGGACCAGGGCGATCCCTGGCTTA
* * *
17999654 TGCATTATGCCTCTTCGATCGGCTCAGCACCTGCACGCTCATTTTGGGGGTTGACTTATGCATAC
255 TGCATTATGCCTCTTCGATCAGCTCAGCACCTGCACGCTCATTTCGGGGGTTGACTTAGGCATAC
* * * * *
17999719 AGAGTTCATTCTCAGTCTAAGATCGGATCAGATCGAGGGTTACGATAGCAGGATCGACAGCACGC
320 AGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGCAAGATCGACAGCACGC
* *
17999784 AGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTTCGACCAGCTGAGCACCCGCACG
385 AGAGGGGATCGAGCCGATCCCCGACTTACGCATTCTACCTCTTCGACCAGCTGAGCACCCGCACG
* *
17999849 TCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAG
450 TCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAG
** ** *
17999914 GGTTGTGGCAACGGGACCGGCAGCACACAGAGGGGGACTGAGCCAATCCCCGGCTTGCGCATTAT
515 GGTTGTGGCAACAAGACCGGCAGCACACAGAGGCAGACTGAGCCAATCCCCGGCTTGCACATTAT
* * *
17999979 GCCTCTTCGGCCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAT
580 GCCTCTTCGGCCAGCTCAATGCCGGCACGCTCATTTCATGGGTTGACTTAT
* *
18000030 GCATACAGAGTTTATTTCCAATCTAAGATCAGACC-GAACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACAGAGTTCA-TTCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAGCA-GATCGAC
* *
18000094 AGCACGCAAGGGGGATCAGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGGTCAGCTGAGCGC
63 AGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTC-GTCGGCTGAGCGC
* * * ** *
18000159 CTGTACACCCATTTTGTTCGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGT-C
127 CCGTAC-CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-TCC
* * *** * *
18000223 GGATCAAGGGTTGTGGCAGCGGGACCGGTAGCACGTC-GAGG-GGGATCAGGTCGAT-CCTCGGC
190 GGATCAAGGGCTGTGGCAGCAGGACCAACAGCACG-CAG-GGAGGGACCAGGGCGATCCCT-GGC
** *
18000285 TTATGCATTATGCCTCTTCGATCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCA
252 TTATGCATTATGCCTCTTCGATCAGCTCAGCACCTGCACGCTCATTTCGGGGGTTGACTTAGGCA
* * *
18000350 TATAGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGC-AGCAGTAAGATCGACAGC
317 TACAGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGA-CAGCAAGATCGACAGC
* * * * * * * * **
18000414 ACGTA-AGGGGATC-AGGCCGATCCTCGGCTTACGCATTCTACCTTTTTGATCGGTTGAGTGCCC
381 ACGCAGAGGGGATCGA-GCCGATCCCCGACTTACGCATTCTACCTCTTCGACCAGCTGAGCACCC
* *
18000477 GCACG-CCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGG
445 GCACGTCC-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
* * * * ** * **
18000541 ATCGATGGTTGTGGCAGCAAGATCGGTAGCATGCAGAGGCAGA-TCGGGCTGATCCCCGGCTTGC
509 ATCGAGGGTTGTGGCAACAAGACCGGCAGCACACAGAGGCAGACT-GAGCCAATCCCCGGCTTGC
* ** *
18000605 ACATTTTGCCTCTTCGGCTGGCTCAATGCCGGCACGCTCGTTTCATGGGTTGACTTAT
573 ACATTATGCCTCTTCGGCCAGCTCAATGCCGGCACGCTCATTTCATGGGTTGACTTAT
* *
18000663 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTCAGATTGACA
1 GCATACAGAGTTCATTCC-AGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAG-CAGATCGACA
* * * *
18000728 GCACGC-AGGTGGGATTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
64 GCACGCAAGG-GGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCG-TCGGCTGAGCGC
* *
18000792 CCGTACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGTCTAAGC
127 CCGTACCC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18000849 ATACGGAGTT
Statistics
Matches: 697, Mismatches: 102, Indels: 41
0.83 0.12 0.05
Matches are distributed among these distances:
632 14 0.02
633 356 0.51
634 317 0.45
635 9 0.01
636 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (630 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGATCGACAGC
ACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGTCGGCTGAGCGCCCGT
ACCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGGATCA
AGGGCTGTGGCAGCAGGACCAACAGCACGCAGGGAGGGACCAGGGCGATCCCTGGCTTATGCATT
ATGCCTCTTCGATCAGCTCAGCACCTGCACGCTCATTTCGGGGGTTGACTTAGGCATACAGAGTT
CATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGCAAGATCGACAGCACGCAGAGGG
GATCGAGCCGATCCCCGACTTACGCATTCTACCTCTTCGACCAGCTGAGCACCCGCACGTCCATT
TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGT
GGCAACAAGACCGGCAGCACACAGAGGCAGACTGAGCCAATCCCCGGCTTGCACATTATGCCTCT
TCGGCCAGCTCAATGCCGGCACGCTCATTTCATGGGTTGACTTAT
Found at i:18000857 original size:26 final size:26
Alignment explanation
Indices: 18000821--18000873 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18000811 GTTGGCTTAG
*
18000821 GCATACGGAGTTCCTTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
18000847 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18000873 G
1 G
18000874 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18002396 original size:171 final size:171
Alignment explanation
Indices: 18002068--18002397 Score: 389
Period size: 171 Copynumber: 1.9 Consensus size: 171
18002058 AGATCGAACC
*
18002068 GAGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACGTAGGGAGGGACAGGACCGATCCC
1 GAGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACGCAGGGAGGGACAGGACCGATCCC
* * * * *
18002133 CAATTTGTGCATTTTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
66 CAATTTGTGCATTATGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTA
* * *
18002198 GGCATATGAATTTCATTCCATGTCTAAGCCCCAGCCAGAAT
131 GGCATACGAAGTTCATCCCATGTCTAAGCCCCAGCCAGAAT
* * * * * * *
18002239 GAGGGTTGTGGCAGCAGGACCGGCAGCGAGAT-TACTAGCACGCAGAGG-GGGACTGGGCTGATC
1 GAGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGAC-AGCACGCAG-GGAGGGACAGGACCGATC
** * * * *
18002302 CACGGA-TTGTGCATTATGCCTCTCCGATCGACTGAGGACCTACATGCTTGTTTCGTGGGTTGAC
64 C-CCAATTTGTGCATTATGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGAC
*
18002366 TTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
128 TTAGGCATACGAAGTTCAT-CCCATGTCTAAGC
18002398 ATACAAAGTT
Statistics
Matches: 132, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
170 2 0.02
171 123 0.93
172 7 0.05
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (171 bp):
GAGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACGCAGGGAGGGACAGGACCGATCCC
CAATTTGTGCATTATGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTA
GGCATACGAAGTTCATCCCATGTCTAAGCCCCAGCCAGAAT
Found at i:18002610 original size:21 final size:21
Alignment explanation
Indices: 18002584--18002636 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
18002574 TCTAAGTCCC
18002584 AGCCGGACCGAGGGTTGTGGT
1 AGCCGGACCGAGGGTTGTGGT
18002605 AGCCGGACCGAGGGTTGTGGT
1 AGCCGGACCGAGGGTTGTGGT
*
18002626 AGCTGGACCGA
1 AGCCGGACCGA
18002637 CAGCACGCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.17, C:0.21, G:0.45, T:0.17
Consensus pattern (21 bp):
AGCCGGACCGAGGGTTGTGGT
Found at i:18003112 original size:26 final size:26
Alignment explanation
Indices: 18003075--18003127 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18003065 GTTGACTTAG
*
18003075 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
18003101 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18003127 G
1 G
18003128 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18003447 original size:26 final size:26
Alignment explanation
Indices: 18003417--18003469 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18003407 GTTGACTTAG
*
18003417 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* * *
18003443 GCATACGGAGTTAATTCGCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
18003469 G
1 G
18003470 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:18003638 original size:331 final size:336
Alignment explanation
Indices: 18003041--18003780 Score: 874
Period size: 331 Copynumber: 2.2 Consensus size: 336
18003031 CGACCGATTG
* * *
18003041 AGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATA
1 AGCACCCGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
* * * *
18003106 CGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGTTTGCGATAGCAGGATCAGTAGCACA
66 CGAAGTTAATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGA-AGCAGCATCAGTAG----
* *
18003171 CAGAAGGGACCGGGTGGTCCCCGACTTACGCATTCTACCTCTTCGGATGGCTGAGCGCCCTCACA
126 -AGAAGGGACCGGGTGATCCCCGACTTACGCATTCTACCTCTTCGGATGGCTGAGCGACCTCACA
*
18003236 CCCATTTTGTGGGTTGGCTTAAACATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAT
190 CCCATTTTGTGGGTTGGCTTAAACATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAG
* ** * ** **
18003301 GGTTGTGGCAGTGGGACTGACAGCACGCAGAAGGGGAT-TGATTTGAT-CCTTGACTTACACATT
255 GGTTGTGGCAGCGGGACCAACAGCACGCAGAAGGGGATCAGA-CCGATCCCCAG-CTTACACATT
18003364 CTACCTCTCCGACTGGCTA
318 CTACCTCTCCGACTGGCTA
* *
18003383 AGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
1 AGCACCCGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
* * ** * *
18003448 CGGAGTTAATTCGCAGTCTAAGATC-GAACTGGATCGAGGGTTACG-A-CAGCA-C-GTAG-G-G
66 CGAAGTTAATTCCCAGTCTAAGATCAG-ACCAGATCAAGGGTTACGAAGCAGCATCAGTAGAGAA
* * * *
18003506 GGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTC-TCTGACTGGTTGAGC-ACCTGCACACC
130 GGGACCGGGT-GATCCCCGACTTACGCATTCTACCTCTTCGGA-TGGCTGAGCGACCT-CACACC
* * *
18003569 CATTTTGTTGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
192 CATTTTGTGGGTTGGCTTAAACATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGG
* * ** *
18003634 TTGTGGCAGCGGGACCAACAGCACGCAGAGGGGGATCAGACCGATCCCCAGCTTGCGTATTCTGC
257 TTGTGGCAGCGGGACCAACAGCACGCAGAAGGGGATCAGACCGATCCCCAGCTTACACATTCTAC
* *
18003699 CTCTTCGACTGGCTG
322 CTCTCCGACTGGCTA
** * * *
18003714 AGCACCCGTACGTTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCAT
1 AGCACCCGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCAT
18003778 ACG
65 ACG
18003781 TCGAAGCATC
Statistics
Matches: 344, Mismatches: 47, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
330 20 0.06
331 213 0.62
332 5 0.01
337 4 0.01
338 1 0.00
339 4 0.01
340 1 0.00
341 1 0.00
342 95 0.28
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (336 bp):
AGCACCCGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
CGAAGTTAATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGAAGCAGCATCAGTAGAGAAG
GGACCGGGTGATCCCCGACTTACGCATTCTACCTCTTCGGATGGCTGAGCGACCTCACACCCATT
TTGTGGGTTGGCTTAAACATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGT
GGCAGCGGGACCAACAGCACGCAGAAGGGGATCAGACCGATCCCCAGCTTACACATTCTACCTCT
CCGACTGGCTA
Found at i:18004411 original size:26 final size:26
Alignment explanation
Indices: 18004375--18004427 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18004365 GTGGACTTAG
18004375 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * * *
18004401 GCATAGGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
18004427 G
1 G
18004428 AATGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:18004689 original size:158 final size:158
Alignment explanation
Indices: 18004401--18004743 Score: 375
Period size: 158 Copynumber: 2.2 Consensus size: 158
18004391 CCCAATCTAA
* * * * **
18004401 GCATAGGGAGTTCTTTCCCAGTCTAAGAATGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGAATAGACCAGACCGAGGGTTGCGACAGCAGGATCAACA
* * * ** ** * * * *
18004466 GCACGTAGGGGGGACCGGGCCGATCCCTGGCTTACTCATTCTGCTTCTTCGAGTGGTTGAACACC
66 GCACGCAGAGGGGACCGAGCCGATCCCCAGCTTACGAATTCTGCCTCTCCGACTGGCTGAACACC
* * *
18004531 CGTA-TTCTCATTTCGTGGGTTGACTTAG
131 CGCACGT-TCATTTCATGGGTTGACTTAG
* ** * *
18004559 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGATAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGAATAGACCAGACCGAGGGTTGCGACAGCAGGATCAACA
* * * *
18004624 GCACGCAGAGGGGACCGAGTCGTTCCCCAGTTTACGAATTCTGCCTCTCCGACTGGCTGAGCACC
66 GCACGCAGAGGGGACCGAGCCGATCCCCAGCTTACGAATTCTGCCTCTCCGACTGGCTGAACACC
* *
18004689 CGCACGTTCATTTTATGGGTTGGCTTAG
131 CGCACGTTCATTTCATGGGTTGACTTAG
18004717 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
18004744 CATACGAAGT
Statistics
Matches: 152, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
157 3 0.02
158 148 0.97
159 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAATAGACCAGACCGAGGGTTGCGACAGCAGGATCAACA
GCACGCAGAGGGGACCGAGCCGATCCCCAGCTTACGAATTCTGCCTCTCCGACTGGCTGAACACC
CGCACGTTCATTTCATGGGTTGACTTAG
Found at i:18004754 original size:26 final size:26
Alignment explanation
Indices: 18004717--18004769 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18004707 GTTGGCTTAG
* *
18004717 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
18004743 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
18004769 G
1 G
18004770 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:18004956 original size:26 final size:26
Alignment explanation
Indices: 18004926--18004977 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18004916 GTTGACTTAG
*
18004926 GCATATGGACTTCA-TCCCTAGTCTAA
1 GCATATAGACTTCATTCCC-AGTCTAA
*
18004952 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGACTTCATTCCCAGTCTAA
18004978 TATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATATAGACTTCATTCCCAGTCTAA
Found at i:18005297 original size:355 final size:355
Alignment explanation
Indices: 18004875--18005514 Score: 915
Period size: 355 Copynumber: 1.8 Consensus size: 355
18004865 TCTCCGATCG
* * *
18004875 GCCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGACTTCA
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGACTTCA
* * *
18004940 TCCCTAGTCTAAGCATATAGAGTTCATTCCCAGTCTAATATCAGACCGGACCAAGGGTTGCGACA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACA
* * * * * * * * *
18005005 GTAGGATCGATAGCACGCAGGGGGGACCGAGTTGAT-CTTCGGCTTGCGCATTCTGCCTCTCCGG
131 GCAGGATCAACAGCACGCAAGGGGGACCGAGCTGATCCCT-GACTTGCGCATTATGCCTCTCCGA
* *
18005069 TCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
195 TCGACTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
*
18005134 AAG-CCCTAGTCGAACAGAGGGTTGTGCCAGCAGGACCGACAGTGGGATCGACAGCACGCAGAAG
260 AAGTCCC-AGCCGAACAGAGGGTTGTGCCAGCAGGACCGACAGTGGGATCGACAGCACGCAGAAG
18005198 CGGATCGGGGCTTATCCGCGCTTGCGCATTAT
324 CGGATCGGGGCTTATCCGCGCTTGCGCATTAT
** * *
18005230 GCCTCTCCGACCGGTTGAGCGCCCGCATGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGACTTCA
* * * *
18005295 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACA
* * *
18005360 GCAGGATCAACAGCACGCAAGGGGGACCGGGCTGATCCCTGACTTGTGTATTATGCCTCTCCGAT
131 GCAGGATCAACAGCACGCAAGGGGGACCGAGCTGATCCCTGACTTGCGCATTATGCCTCTCCGAT
* ** * * * *
18005425 CGGCTGAGCGCCAGCACGCTGGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTA
196 CGACTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
*
18005490 AGTCCCAGCCGAACCGAGGGTTGTG
261 AGTCCCAGCCGAACAGAGGGTTGTG
18005515 GCAGTGGGAC
Statistics
Matches: 246, Mismatches: 37, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
355 241 0.98
356 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (355 bp):
GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGACTTCA
TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACA
GCAGGATCAACAGCACGCAAGGGGGACCGAGCTGATCCCTGACTTGCGCATTATGCCTCTCCGAT
CGACTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
AGTCCCAGCCGAACAGAGGGTTGTGCCAGCAGGACCGACAGTGGGATCGACAGCACGCAGAAGCG
GATCGGGGCTTATCCGCGCTTGCGCATTAT
Found at i:18005311 original size:26 final size:26
Alignment explanation
Indices: 18005281--18005333 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18005271 GTTAACTTAG
*
18005281 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18005307 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18005333 G
1 G
18005334 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18005691 original size:159 final size:157
Alignment explanation
Indices: 18005307--18005691 Score: 373
Period size: 159 Copynumber: 2.4 Consensus size: 157
18005297 CCCAGTCTAA
* * * * * *
18005307 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGAC-AGACCGAGGGTTGTGGCAGTAGGACCAATA
* * * * * * * * *
18005372 GCACGCAAGGGGGACCGGGCTGATCCCTGACTTGTGTATTATGCCTCTCCGATCGGCTGAGCGCC
65 GCACGCAAGGGGGACCAGACCGATCCCTGACTTGTGCATTATGCCTCTCCAACCAGCTCAACGCC
* * * ** *
18005437 AGCACGCTGGTTTTGTGGGTTGGCTTAG
130 AGAACACTCGTTTCATGGGTTGACTTAG
* * * *
18005465 GCATAGGGAGTTCATTCT-ATGTCTAAG-TCCCAG-CCGAACCGAGGGTTGTGGCAGTGGGACCG
1 GCATACGGAGTTCATTCTCA-GTCTAAGAT--CAGACAG-ACCGAGGGTTGTGGCAGTAGGACCA
* * *
18005527 GTAGCACGTAGAGGGGGACCAGACCGATCTCC-GGCTTGTGCATTATGCCTCTCCAACCAGCTCA
62 ATAGCACGCA-AGGGGGACCAGACCGATC-CCTGACTTGTGCATTATGCCTCTCCAACCAGCTCA
*
18005591 ACGCCCGAACACTCGTTTCATGGGTTGACTTAG
125 ACGCCAGAACACTCGTTTCATGGGTTGACTTAG
* * * *
18005624 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAGTGTTATGGTAGTAGGACCAATA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGA-CAGACCGAGGGTTGTGGCAGTAGGACCAATA
18005689 GCA
65 GCA
18005692 GGATCGATAG
Statistics
Matches: 180, Mismatches: 37, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
157 3 0.02
158 53 0.29
159 118 0.66
160 6 0.03
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCAGACAGACCGAGGGTTGTGGCAGTAGGACCAATAG
CACGCAAGGGGGACCAGACCGATCCCTGACTTGTGCATTATGCCTCTCCAACCAGCTCAACGCCA
GAACACTCGTTTCATGGGTTGACTTAG
Found at i:18006511 original size:26 final size:26
Alignment explanation
Indices: 18006475--18006527 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18006465 GTTGACTTAG
18006475 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18006501 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18006527 G
1 G
18006528 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18012828 original size:26 final size:26
Alignment explanation
Indices: 18012792--18012842 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18012782 TTGACTTAGG
* *
18012792 CATATGGAGTTCATCCCCAGTCTAAA
1 CATATAGAGTTCATCCCCAATCTAAA
*
18012818 CATATAGAGTTCATTCCCAATCTAA
1 CATATAGAGTTCATCCCCAATCTAA
18012843 GATCGAACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (26 bp):
CATATAGAGTTCATCCCCAATCTAAA
Found at i:18013591 original size:26 final size:26
Alignment explanation
Indices: 18013555--18013607 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18013545 GTTGACTTAG
18013555 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18013581 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18013607 G
1 G
18013608 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18014312 original size:26 final size:26
Alignment explanation
Indices: 18014276--18014350 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
18014266 GTTGACTTAG
18014276 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18014302 GCATACAGAGTTCATCCCCAGTCT-A
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18014327 --A-ACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18014350 G
1 G
18014351 ATCGGATCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
22 18 0.40
23 2 0.04
25 1 0.02
26 24 0.53
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18014625 original size:158 final size:158
Alignment explanation
Indices: 18014328--18014972 Score: 569
Period size: 158 Copynumber: 4.1 Consensus size: 158
18014318 CCCAGTCTAA
* * * * *
18014328 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACTGAGGGTTACGACAGCAGGATCGACAGCAC
1 ACGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCAC
* * * * *
18014393 GCAAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCCGCGCCCGGA
66 GCAGGGGGGACCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCA
18014458 CGCTCGTTTCGTGGGTTGACTTATGCAT
131 CGCTCGTTTCGTGGGTTGACTTATGCAT
* * * * * *
18014486 ACAGATTTCATTCCCAGTCTAAGATTAGATCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCAC
1 ACGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCAC
* * * * * * *
18014551 GCAGGGGGGACCGAGCTTATCC-CTGGCTTGCACATTCTGTCTCTCCGATCGGCTGAGCGCTCGC
66 GCAGGGGGGACCGAGCTGATCCTC-GGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGC
* * *
18014615 ACGC-CTGTTTCATGGGTTGGCTTAGGCAT
130 ACGCTC-GTTTCGTGGGTTGACTTATGCAT
* * ** * * * * *
18014644 AGGGAGTTCATT-CCATGTCTAAGCCCA-AGCCAGACTGAGAGTTGTGGCAGCGGGACTGGTA-A
1 ACGGATTTCATTCCCA-GTCTAAGATCAGA-CCAGACTGAGGGTTGCGACAGCAGGA-TCG-ACA
* * * *
18014706 TG--CGAAGAGGGGGACCG-GGTCGATCCTCAGCTTGTGCATTATGCCTCTTC-AGTCGGCTCAG
62 -GCACGCAG-GGGGGACCGAGCT-GATCCTCGGCTTGCGCATTATGCCTCTTCGA-TCGGCTCAG
*
18014767 CGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCAT
123 CGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCAT
* * *
18014803 ATGGATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACAGCAC
1 ACGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCAC
* * * * * * *
18014868 GTAGGGGGGACCGAG-TCGATCCCCGACTTGCGCATTCTACCATC--C-AGCCGGCTGAGCGCCC
66 GCAGGGGGGACCGAGCT-GATCCTCGGCTTGCGCATTATGCC-TCTTCGA-TCGGCTCAGCGCCC
* ** ** *
18014929 GCACGCTCATTTAATGGGTTGGTTTAGGCAT
128 GCACGCTCGTTTCGTGGGTTGACTTATGCAT
*
18014960 ACGGAGTTCATTC
1 ACGGATTTCATTC
18014973 GATGTCTAAG
Statistics
Matches: 390, Mismatches: 78, Indels: 39
0.77 0.15 0.08
Matches are distributed among these distances:
157 59 0.15
158 207 0.53
159 117 0.30
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
ACGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCAC
GCAGGGGGGACCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTATGCAT
Found at i:18015889 original size:26 final size:26
Alignment explanation
Indices: 18015860--18015910 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18015850 GTTGACTTAA
18015860 GCATACAG-AGTTCATCCCCAGTCTAT
1 GCATA-AGAAGTTCATCCCCAGTCTAT
* *
18015886 GCATATGAAGTTCATTCCCAGTCTA
1 GCATAAGAAGTTCATCCCCAGTCTA
18015911 AGATCAGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAT
Found at i:18016234 original size:26 final size:26
Alignment explanation
Indices: 18016204--18016256 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18016194 TTTGGCTTAG
*
18016204 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18016230 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18016256 G
1 G
18016257 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18017617 original size:26 final size:26
Alignment explanation
Indices: 18017569--18017621 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18017559 GTTGACTTAC
* *
18017569 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
* *
18017595 GCATACGAAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
18017621 G
1 G
18017622 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCACAGTCTAA
Found at i:18017979 original size:159 final size:159
Alignment explanation
Indices: 18017595--18017991 Score: 376
Period size: 159 Copynumber: 2.5 Consensus size: 159
18017585 CCCAGTCTAA
* * * * * *
18017595 GCATACGAAGTTCATT-CATAGTCTAAGATTGGATCGGACCGAGGGTTGCAGCAGTTGGATCGAC
1 GCATACGGAGTTCATTCCA-AGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
* * ** * * * * *
18017659 AGCACGCAGGGGGGACCGGGTCGATTTTCGGCTTGCGTATTCTGCCTCTCTGGCCGACTGAGCGC
65 AGCATGCAGGGGGGACCGGGTCAATCCTCGGCTTGCGCATTATGCCTCTCTGACCGACTCAACGC
18017724 CCGCACGCCCCATTCCGTGGGTTAGCTTAG
130 CCGCACGCCCCATTCCGTGGGTTAGCTTAG
* * *** * * * *
18017754 GCATAAGGAGTTCATTCCAAGTCTTAGCCCCAG-CCGGACCGAGGGTTGTGGTAGTGGGACCAAC
1 GCATACGGAGTTCATTCCAAGTCTAAG-ATTAGACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
**
18017818 AGCATGCAGAGGGGGATTGGGTCAATCCTCGGCTTGCGCATTATGCCTCT-TCGACCTG-CTCAA
65 AGCATGCAG-GGGGGACCGGGTCAATCCTCGGCTTGCGCATTATGCCTCTCT-GACC-GACTCAA
* * * *
18017881 CGCCCGTATG-CTCATTCCGTGGGTT-GACTTAT
127 CGCCCGCACGCCCCATTCCGTGGGTTAG-CTTAG
* * * *
18017913 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACA
*
18017978 GCATG-ATGGGGGAC
66 GCATGCAGGGGGGAC
18017992 TAGGTCGATC
Statistics
Matches: 187, Mismatches: 44, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.03
158 4 0.02
159 126 0.67
160 50 0.27
161 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACA
GCATGCAGGGGGGACCGGGTCAATCCTCGGCTTGCGCATTATGCCTCTCTGACCGACTCAACGCC
CGCACGCCCCATTCCGTGGGTTAGCTTAG
Found at i:18018422 original size:13 final size:13
Alignment explanation
Indices: 18018404--18018430 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18018394 TGCGTATTAT
18018404 GCCTCTCCGATCG
1 GCCTCTCCGATCG
18018417 GCCTCTCCGATCG
1 GCCTCTCCGATCG
18018430 G
1 G
18018431 TTAAGTGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.44, G:0.26, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:18018505 original size:26 final size:26
Alignment explanation
Indices: 18018468--18018520 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18018458 GTTGAGTTAG
*
18018468 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18018494 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18018520 G
1 G
18018521 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18024693 original size:26 final size:26
Alignment explanation
Indices: 18024644--18024696 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18024634 GTTGGCTTAG
*
18024644 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
18024670 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
18024696 G
1 G
18024697 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:18025053 original size:26 final size:26
Alignment explanation
Indices: 18025017--18025069 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18025007 GTTGACTTAG
*
18025017 GCATATGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
18025043 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
18025069 G
1 G
18025070 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:18025504 original size:158 final size:156
Alignment explanation
Indices: 18025051--18025544 Score: 485
Period size: 158 Copynumber: 3.1 Consensus size: 156
18025041 AAGCATACGA
* * *
18025051 AGTTCATTCCCA-GTCTAAGATCGGATCGGAAC-GAGGGTTGTCGTAGTAGGATCGACAGCACGC
1 AGTTCATT-CCATGTCTAAGATCAGATCGG-ACTGAGGGTTG-CGTAGCAGGATCGACAGCACGT
* * *
18025114 AGGGGGGAACGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCAGGCTGAACGCCCGCACG
63 AAGGGGGACCGAGCCGAT-CCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAACGCCCGCACG
* * *
18025179 CCCGTTTTGTGGGTTGGCTTAGGCATAGGG
127 CTCGTTTCGTGGGTTGGCTTAGGCATATGG
** * * * *
18025209 AGTTCATTCCATGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAGCGGGATCGACAGCACAT
1 AGTTCATTCCATGTCTAAG-ATCAGATCGGACT-GAGGGTTG-CGTAGCAGGATCGACAGCACGT
* * * * * * * * *
18025272 AGAGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATTCCTCTTCGACCGGCTCAATGCCCGTAC
63 A-AGGGGGACCGAGCCGATCCC-GGCTTGCGCATTCTACCTCTCCGGCCGGCTGAACGCCCGCAC
* * ** *
18025337 GCTCATTTCGTGGGTTGACTTTTGCATATAG
126 GCTCGTTTCGTGGGTTGGCTTAGGCATATGG
* * * * *
18025368 AGTTCATTCTCA-GTCTAAGATCAGACCAGACTGAGAGTTGCAGTAGCAGGATCGATAGCATGTA
1 AGTTCATTC-CATGTCTAAGATCAGATCGGACTGAGGGTTGC-GTAGCAGGATCGACAGCACGTA
* * * * * *
18025432 AGGGGGCCCGAGCCGATGCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGT
64 AGGGGGACCGAGCCGAT-CCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAACGCCCGCACGC
18025497 TCGTTTCGTGGGTTGGCTTAGGCATATGG
128 TCGTTTCGTGGGTTGGCTTAGGCATATGG
18025526 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
18025545 CATACGGAGT
Statistics
Matches: 265, Mismatches: 59, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 139 0.52
159 117 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGTAGCAGGATCGACAGCACGTAAG
GGGGACCGAGCCGATCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAACGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATATGG
Found at i:18025554 original size:26 final size:26
Alignment explanation
Indices: 18025518--18025570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18025508 GTTGGCTTAG
*
18025518 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18025544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18025570 G
1 G
18025571 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18026763 original size:155 final size:157
Alignment explanation
Indices: 18026265--18026753 Score: 533
Period size: 159 Copynumber: 3.1 Consensus size: 157
18026255 CCTAGTTTAA
*
18026265 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* *
18026330 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-GACCGGCTGAGCGC
66 GCACGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGA-CAGCTGAGCGC
*
18026394 CCGCACGC-CTGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTC-GTTTCGTGGGTTGGCTTAG
** ** * * * *
18026423 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
18026486 TAGCACGCAGAGGGGGATCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTTC-GACCGACTCAG
64 CAGCACGCAG-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACAG-CTGAG
* * * * * *
18026550 CGTCCGTTCGCTCATTTCATGGGTTGACTTAC
126 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * *
18026582 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCAAGGGTTGCAGTAGCAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
18026647 GCACGCAGGGGGGA-GGGCCGAT-CCCGGCTTGCACATTCTGCGTCTCCGGTCAGCTGAGTGCCC
66 GCACGCAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACAGCTGAGCGCCC
18026710 GTACGCTCGTTTCGTGGGTTGGCTTAG
131 GTACGCTCGTTTCGTGGGTTGGCTTAG
18026737 GCATACAGAGTTCATTC
1 GCATACAGAGTTCATTC
18026754 TATGTCTAAG
Statistics
Matches: 267, Mismatches: 56, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
155 65 0.24
156 9 0.03
157 3 0.01
158 66 0.25
159 120 0.45
160 4 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACAGCTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18026880 original size:11 final size:11
Alignment explanation
Indices: 18026866--18026890 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18026856 ACCATCGTCA
18026866 GAGCATCGCCG
1 GAGCATCGCCG
18026877 GAGCATCGCCG
1 GAGCATCGCCG
18026888 GAG
1 GAG
18026891 AGCCTAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.32, G:0.40, T:0.08
Consensus pattern (11 bp):
GAGCATCGCCG
Found at i:18029229 original size:26 final size:26
Alignment explanation
Indices: 18029151--18029218 Score: 136
Period size: 26 Copynumber: 2.6 Consensus size: 26
18029141 GGTTGATTAG
18029151 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
18029177 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
18029203 GCATACAGAGTTCATT
1 GCATACAGAGTTCATT
18029219 TCCAATCTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:18029923 original size:26 final size:26
Alignment explanation
Indices: 18029887--18029939 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18029877 GTTCGCTTAG
18029887 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18029913 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18029939 G
1 G
18029940 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18030297 original size:26 final size:26
Alignment explanation
Indices: 18030267--18030319 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18030257 GTAGACTTAG
*
18030267 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
18030293 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18030319 G
1 G
18030320 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18030685 original size:158 final size:157
Alignment explanation
Indices: 18030293--18030793 Score: 381
Period size: 158 Copynumber: 3.2 Consensus size: 157
18030283 CCTAGTCTAA
* * * *
18030293 GCATACAGAGTTCATTCCCAGTCTAAGATC-GAACCGGATCGAGGGTTGCGGTAGC-AGGATCGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCA-CTAGGATCGA
* * * * * * * * *
18030356 CAGCACACA-GGGGACTAGGTCGATCCCCAGTTTGCGTATTCTGCCTCTCCTGTCGGTTGAGAGC
64 CAGCACGCAGGGGGACCAGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGGCTCAGAGC
* * *
18030420 CTGCACACCCGTTTCATGGGTTGGCTTAG
129 CCGCACACCCATTTCATGGGTTGACTTAG
** * * *
18030449 GCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGGCAGTAGGA-CGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCACTAGGATCGA
* * *
18030511 TAGCATGCAGAAGGGGACCAGGTCGATCCCC-GACTTACGCATTATGCCTCTTCGGTCGGCTCAG
64 CAGCACGCAG--GGGGACCAGGTCGATCCCCAG-CTTACGCATTATGCCTCTCCGGTCGGCTCAG
* * ** *
18030575 CA-CCCGCACGCTCATTTTGTGGGTTGACTTAT
126 -AGCCCGCACACCCATTTCATGGGTTGACTTAG
* * *
18030607 GCATACGGAGTTCATTCCCAGTCTGAGATCAGACCAGACCGAGGGTTGTGGCACTAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCACTAGGATCGACA
* * * * * * * * * ** * * *
18030672 GCACGCAGGGGGGACCCGGTGGATCTCCGGCTTGCGGATTCTACCTCTCTGACCTGCTGAGTGCC
66 GCACGCA-GGGGGACCAGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGGCTCAGAGCC
* * * * * *
18030737 CACACACTCGTTTCGTGGGTTGCCTTTG
130 CGCACACCCATTTCATGGGTTGACTTAG
18030765 GCATAC-GAAGTTCATTCCCAGTCTAAGAT
1 GCATACAG-AGTTCATTCCCAGTCTAAGAT
18030794 TTTGAGCCAC
Statistics
Matches: 268, Mismatches: 61, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
155 11 0.04
156 42 0.16
157 6 0.02
158 195 0.73
159 13 0.05
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCACTAGGATCGACA
GCACGCAGGGGGACCAGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGGCTCAGAGCCC
GCACACCCATTTCATGGGTTGACTTAG
Found at i:18031495 original size:26 final size:26
Alignment explanation
Indices: 18031459--18031511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18031449 GTTGACTTAG
18031459 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18031485 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18031511 G
1 G
18031512 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18033040 original size:158 final size:156
Alignment explanation
Indices: 18032631--18033318 Score: 476
Period size: 158 Copynumber: 4.3 Consensus size: 156
18032621 GAGTGCCTGT
* * * * *
18032631 ACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATGCCATGTCTAAGCTCTAGCCGGATT
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCGGACT
* * * *
18032696 GAGGGTTATGGCAGTGGGACTGGCAGCACGCAGAGTGGGACCGAGCCGATCCCCGACTTGCGCAT
66 GAGGG-T-TGCCAGTAGGACTGGCAGCACGCAGAG-GGGATCGGGCCGATCCCCGACTTGCGCAT
* *
18032761 TATGCCTCTTCTGTCGGCTCAGCACCCGC
128 TATACCTCTTCCGTCGGCTCAGCACCCGC
* * * * ** * *
18032790 ACGCTCATTTCATGGGTTGACTTATGCATTCGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAA
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGA
* * * * *
18032853 CTGAGGGTTGCAGTAGTAGGA-TCGACAGCACGCTGAGGGGATCGGGCCGATCCCCGGCTTGCGT
64 CTGAGGGTTGC--CAGTAGGACT-GGCAGCACGCAGAGGGGATCGGGCCGATCCCCGACTTGCGC
* *
18032917 ATTCTACCT-TTCCGATCGGCTGAGCACCCGC
126 ATTATACCTCTTCCG-TCGGCTCAGCACCCGC
* * * * * * *
18032948 ATGCCCGTTTCATGGGTTGGCTCAGGCATAGGGCGTTGATTCCATGTCTAAGCCCCAGTCGGACC
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCGGACT
* * * *
18033013 GAGGGCTGTGCCAGCAGGACTGGCAGCACGCAGAAGGGGATCAGGTCGATCCTCGACTTGCGCAT
66 GAGGG-T-TGCCAGTAGGACTGGCAGCACGCAG-AGGGGATCGGGCCGATCCCCGACTTGCGCAT
* * * * * ** *
18033078 TATGCTTCTTCGGCCGGCTTAGTGCCCAC
128 TATACCTCTTCCGTCGGCTCAGCACCCGC
* * * * * *
18033107 ACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCA-GTCTAAG-A-TAGGATCGGA
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCA-G-CCGGA
* * * ** * * * * * * * *
18033169 CCGAGGGTTACAGCAGCAGGA-TCGATAGCACGTAGAGGGGGACCCGACTGATCCCTGGCTTACG
64 CTGAGGGTTGC--CAGTAGGACT-GGCAGCACGCAGA-GGGGATCGGGCCGATCCCCGACTTGCG
* * * * * **
18033233 CATTTTGCTTC-TCCGACCGGCTAAGTGCCCGC
125 CATTATACCTCTTCCG-TCGGCTCAGCACCCGC
* * *
18033265 ACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
18033319 TACGGAGTTC
Statistics
Matches: 417, Mismatches: 90, Indels: 43
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 16 0.04
158 230 0.55
159 157 0.38
160 11 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCGGACT
GAGGGTTGCCAGTAGGACTGGCAGCACGCAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTAT
ACCTCTTCCGTCGGCTCAGCACCCGC
Found at i:18033080 original size:317 final size:317
Alignment explanation
Indices: 18032631--18033317 Score: 819
Period size: 317 Copynumber: 2.2 Consensus size: 317
18032621 GAGTGCCTGT
* * * * **
18032631 ACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATGCCATGTCTAAGCTCTAGCCGGATT
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
* * ** *
18032696 GAGGGTTATGGCAGTGGGACTGGCAGCACGCAGAGTGGGACCGAGCCGATCCCCGACTTGCGCAT
66 GAGGGCTATGCCAGCAGGACTGGCAGCACGCAGAGTGGGACAGAGCCGATCCCCGACTTGCGCAT
* * * *
18032761 TATGCCTCTTCTGTCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTATGCATTCGGAGT
131 TATGCCTCTTCGGCCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTATGCATACGGAGT
* * * *
18032826 TCATTCCCAGTCTAAGATCA-GACCGAACTGAGGGTTGCAGTAGTAGGATCGACAGCACGCT-GA
196 TCATT-CCAGTCTAAGAT-AGGACCGAACCGAGGGTTACAGCAGCAGGATCGACAGCACG-TAGA
* * * * * * *
18032889 -GGGGATCGGGCCGATCCCCGGCTTGCGTATTCTACCTT-TCCGATCGGCTGAGCACCCGC
258 GGGGGACCCGACCGATCCCCGGCTTACGCATT-TACCTTCTCCGACCGGCTAAGCACCCGC
* * * * *
18032948 ATGCCCGTTTCATGGGTTGGCTCAGGCATAGGGCGTTGATTCCATGTCTAAGCCCCAGTCGGACC
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
* * *
18033013 GAGGGCTGTGCCAGCAGGACTGGCAGCACGCAGAAG-GGGATCAG-GTCGATCCTCGACTTGCGC
66 GAGGGCTATGCCAGCAGGACTGGCAGCACGCAG-AGTGGGA-CAGAGCCGATCCCCGACTTGCGC
* * ** *
18033076 ATTATGCTTCTTCGGCCGGCTTAGTGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGA
129 ATTATGCCTCTTCGGCCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTATGCATACGGA
* * *
18033141 GTTCATTCCAGTCTAAGATAGGATCGGACCGAGGGTTACAGCAGCAGGATCGATAGCACGTAGAG
194 GTTCATTCCAGTCTAAGATAGGACCGAACCGAGGGTTACAGCAGCAGGATCGACAGCACGTAGAG
* * ** **
18033206 GGGGACCCGACTGATCCCTGGCTTACGCATTTTGCTTCTCCGACCGGCTAAGTGCCCGC
259 GGGGACCCGACCGATCCCCGGCTTACGCATTTACCTTCTCCGACCGGCTAAGCACCCGC
* * *
18033265 ACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18033318 ATACGGAGTT
Statistics
Matches: 309, Mismatches: 55, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
315 2 0.01
316 50 0.16
317 253 0.82
318 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
GAGGGCTATGCCAGCAGGACTGGCAGCACGCAGAGTGGGACAGAGCCGATCCCCGACTTGCGCAT
TATGCCTCTTCGGCCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTATGCATACGGAGT
TCATTCCAGTCTAAGATAGGACCGAACCGAGGGTTACAGCAGCAGGATCGACAGCACGTAGAGGG
GGACCCGACCGATCCCCGGCTTACGCATTTACCTTCTCCGACCGGCTAAGCACCCGC
Found at i:18033988 original size:26 final size:26
Alignment explanation
Indices: 18033951--18034002 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18033941 GTTGGCTTAG
18033951 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18033977 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
18034003 TATTTTAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18035179 original size:26 final size:26
Alignment explanation
Indices: 18035129--18035181 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18035119 GTTAGCTTAG
*
18035129 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
18035155 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
18035181 G
1 G
18035182 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:18036235 original size:158 final size:158
Alignment explanation
Indices: 18035875--18036237 Score: 360
Period size: 158 Copynumber: 2.3 Consensus size: 158
18035865 CCCAGTCTAA
* * * * *
18035875 GCATACGGAGTTCATTCCTAGTGTAAGATCGGACCGAACCGAGGGTTGAGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGCAGGACCGACA
* * * *
18035940 GCACGCAGGAAGGACCGGGTCGATCCCCAGCTTACGGATTTTGCCTCTCCGGCCAGCTGAGCGCC
66 GCACGCAGGAAGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGGACAGCTGAGCACC
*
18036005 CGCACACCCATTTCATGGGTTGGCTTAG
131 CGCACACCCATTTCATGGGTTGACTTAG
* * ** * * *
18036033 GCATAGGGAGTTTATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGAGGCAGCAG-GACCG
* ** * * * *
18036095 GCA-CACGCAGAGGGGGACCGGGTCGATCCCC-GACTTGCGCATTATGCCTCTTC-GATAGGCTT
63 ACAGCACGCAG-GAAGGACCGGGTCGATCCCCAG-CTTACGCATTATGCCTCTCCGGACA-GCTG
* * * * * *
18036157 AGTACCCGCACTCTCGTTTCGTGGGTTGACTTAT
125 AGCACCCGCACACCCATTTCATGGGTTGACTTAG
18036191 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
18036238 ACGGTAGTAG
Statistics
Matches: 161, Mismatches: 36, Indels: 16
0.76 0.17 0.08
Matches are distributed among these distances:
157 16 0.10
158 140 0.87
159 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGCAGGACCGACA
GCACGCAGGAAGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGGACAGCTGAGCACC
CGCACACCCATTTCATGGGTTGACTTAG
Found at i:18036379 original size:26 final size:26
Alignment explanation
Indices: 18036329--18036381 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18036319 GTTAGCTTAG
*
18036329 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
18036355 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
18036381 G
1 G
18036382 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:18037084 original size:26 final size:26
Alignment explanation
Indices: 18037048--18037100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18037038 GTTGACTTAG
18037048 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18037074 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18037100 G
1 G
18037101 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18037654 original size:343 final size:341
Alignment explanation
Indices: 18037018--18037944 Score: 1164
Period size: 343 Copynumber: 2.7 Consensus size: 341
18037008 CGGCTCAACG
*
18037018 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCATCCCCAGTCTAAGCATACGGA
* * * * *
18037083 GTTCATTCCCAGTGTAAGATC-GAACCGGG-TCGAAGGTTGC-GTCAGCAAGATCAACAGCACGC
65 GTTCATTCCAAGTCTAAGATCAG-ACCGGGCT-GAGGGTTGCGGT-AGCAGGATCGACAGCACGC
** * * * *
18037145 AGGAAGGACCGGG-TCGATCCCCAGCTTACGGATTCTGCCTCTCCGACCAGCTGAGCGCCCGCAC
127 AGGGGGGATCGGGCT-GAT-CCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAC
** * ** *
18037209 ACCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGA
190 ACCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGA
* * * *
18037274 GGGTTCTCGTAGCGGGACCGGCAGCACGCAGAGGGGGACCGAGCCAATCCTCGGCTTACGCATTA
255 GGGTTCTCGCAGCGGGACCAGCAGCACGCAAAGGGGGACCGAGCCAATCCCCGGCTTACGCATTA
* * *
18037339 CGTCTCTTCGGCCGACTCAGCC
320 CGCCTCTCCGACCGACTCAGCC
* * * *
18037361 CCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGGATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCATCCCCAGTCTAAGCATACGGA
* *
18037426 GTTCATTCCTAGTCTAAGATCAGACCGGGCTGAGGGTTGCGGTAGCAGGATCGACAGCACACAGG
65 GTTCATTCCAAGTCTAAGATCAGACCGGGCTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGG
* * * * * *
18037491 GGGGATCGGGCTGATCCTCGGCTTACGCATTCTTCCTCTCCGGTCGGTTGAGCACCCGTACACCT
130 GGGGATCGGGCTGATCC-CAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACCT
18037556 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGT
194 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGT
* * * * ** *
18037621 TGTGGCAGTGGGACCAGCAGCACGTAAAGGGGGACCGAGCTTATCCCCGGCTTACGCATTATGCC
259 TCTCGCAGCGGGACCAGCAGCACGCAAAGGGGGACCGAGCCAATCCCCGGCTTACGCATTACGCC
*
18037686 TCTCCGATCGACTCAGCC
324 TCTCCGACCGACTCAGCC
* * *
18037704 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGTGTTCATCCCCAGTCTAAGCATAC-GA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGA-AGTTCATCCCCAGTCTAAGCATACGGA
* * *
18037768 GTTCGTTCCAAGTCTAAGATCAGACCGAGCTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGG
65 GTTCATTCCAAGTCTAAGATCAGACCGGGCTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGG
* * * * *
18037833 GGGGATCGGGCCGATCCCTAGCTTGCGTATTCTGCCTCTCCAGCCGACTGAGCGCCCGCAC-CCT
130 GGGGATCGGGCTGATCCC-AGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACCT
* ** * *
18037897 CGTTTCGTGGGTTGGCTTAGGCATATTGAGTTCAATCCATATCTAAGC
194 -GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18037945 ATACGAAGTT
Statistics
Matches: 503, Mismatches: 73, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
341 4 0.01
342 155 0.31
343 339 0.67
344 5 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (341 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGAAGTTCATCCCCAGTCTAAGCATACGGAG
TTCATTCCAAGTCTAAGATCAGACCGGGCTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGG
GGGATCGGGCTGATCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACCTGT
TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTC
TCGCAGCGGGACCAGCAGCACGCAAAGGGGGACCGAGCCAATCCCCGGCTTACGCATTACGCCTC
TCCGACCGACTCAGCC
Found at i:18038333 original size:26 final size:26
Alignment explanation
Indices: 18038297--18038349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18038287 GTTGACTTAG
18038297 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18038323 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18038349 G
1 G
18038350 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18039542 original size:26 final size:26
Alignment explanation
Indices: 18039512--18039564 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18039502 GTTGACTTAG
18039512 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
18039538 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
18039564 G
1 G
18039565 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:18040243 original size:26 final size:26
Alignment explanation
Indices: 18040207--18040259 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18040197 GTTGACTTTG
18040207 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
18040233 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18040259 G
1 G
18040260 ATAAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18040579 original size:26 final size:26
Alignment explanation
Indices: 18040549--18040601 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18040539 GTTGGCTTAG
18040549 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
18040575 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
18040601 G
1 G
18040602 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:18040795 original size:26 final size:26
Alignment explanation
Indices: 18040758--18040810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18040748 GTTAACTTAG
18040758 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18040784 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18040810 G
1 G
18040811 ATCCAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18040946 original size:551 final size:551
Alignment explanation
Indices: 18039913--18041154 Score: 1435
Period size: 551 Copynumber: 2.3 Consensus size: 551
18039903 TAGCACGTAG
* * * * * ** * *
18039913 GGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCT-TCACCCGACTGAGTGCCCGCACGC
1 GGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCATCTCT-GGCCGGCTGAGCGCCCGCACGC
*
18039977 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCATACGGAGTTCATTCC
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
18040042 GAGTCTAAAAATGGACCAGACCTAGGGTTGTGATAGCAGGACCAGCAGTAGGATCGACAGCACAC
130 CAGTCT-AAGATGGACCAGACCGAGGATTGTGATAGCAAGACCAGCAGCAGGATCGACAGAACAC
* * * *
18040107 AGGGGGGATCGGGTTGATCCCCGACTTGCACATTTTACCTCTTCGGTCGGCCTCTCCAATCGACT
194 AGGGGGGATCGGGTCGATCCCCGACTTGCACATTCTACCTCTTCGGTCGACCTCTCCAACCGACT
* ** * *
18040172 AAGCGCCTGTATGCGCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATCCCCAGTCTAAGCAT
259 AAGCGCCTGCACACGCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * * *
18040237 ATGGAGTTCATTCCCAGTTTAAGATAAGACCAGAATGAGGGTTGCGACAGTAGGATCAGTAGCAC
324 ACGGAGTTCATTCCCAGTCTAAGATAAGACCAGAATGAGGGTTACGACAGCAGGATCAGTAGCAC
* * * * * *
18040302 GCAGGGGGGATCGGACTGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCACCTGCA
389 ACAGGGGGGACCGAACCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGACTAAGCACCCGCA
* * * * * *
18040367 CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAATCGGACCG
454 CGCCCATTTCATGGGTTGGCTGAGGCATAGGGAATTCATTCCACGTCTAAGCCCCAAGCAGACCG
* *** ** *
18040432 AGGGTTCTGGCAGTAGGACTGGCTGCACGTAGA
519 AGGGTTCTGGCAGCAGGACCAACAACACGCAGA
* * * *
18040465 GGGGGACC-GGCCTATCCTCAACTTGCGCATTTTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCT
1 GGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCATCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
18040529 CGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
* * * *
18040594 AGTCTAAGATCGGA-CAGGACCGAGGATTAG-GGTAGCAAGACCAGTAGCAGGATCGATAGAACG
131 AGTCTAAGAT-GGACCA-GACCGAGGATT-GTGATAGCAAGACCAGCAGCAGGATCGACAGAACA
* *** * *
18040657 CAGGGGGGATCGGGTCGATCCCTGACTTGTGTATTCTGCCTCTTCGGTCGACCTCT-CAGGCCGA
193 CAGGGGGGATCGGGTCGATCCCCGACTTGCACATTCTACCTCTTCGGTCGACCTCTCCA-ACCGA
* * * *
18040721 CTGAGC-TCTCGCACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
257 CTAAGCGCCT-GCACACGCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * ** * **
18040785 CATACGTAGTTCATTCCCAGTCTAAGATCCA-A-TTGGATCGAGGGTTACGGTAGCAGGATC-GA
321 CATACGGAGTTCATTCCCAGTCTAAGAT-AAGACCAGAAT-GAGGGTTACGACAGCAGGATCAG-
* * * * *
18040847 TAGCACACCGGTGGGACCGAACCGATCCCCAGCTTGTGCATTCTGCCTCT-TCGGCCGGCTAAGT
383 TAGCACACAGGGGGGACCGAACCGATCCCCAGCTTGCGCATTCTGCCTCTCT-GGCCGACTAAGC
* * * * *
18040911 GCCCGCAGGCCCGTTTCGTGGGTTGGCTGAGGCATAGGGAATTCATTCCACGTCTAAGCCCCAGG
447 ACCCGCACGCCCATTTCATGGGTTGGCTGAGGCATAGGGAATTCATTCCACGTCTAAGCCCCAAG
* * *
18040976 CAGACCGAGGGTTGTGGCAGCGGGACCAACAACATGCAGA
512 CAGACCGAGGGTTCTGGCAGCAGGACCAACAACACGCAGA
* * * *
18041016 GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCATCTTTGGCCGGCTTAGCTCCCGCACGCT
1 GGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCATCTCTGGCCGGCTGAGCGCCCGCACGCT
*
18041081 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-GATTGTCTAAGCATACGGAGTTCATTCC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-TGTCTAAGCATACGGAGTTCATTCC
*
18041145 CAATCTAAGA
130 CAGTCTAAGA
18041155 GTTTGAGCCA
Statistics
Matches: 577, Mismatches: 101, Indels: 24
0.82 0.14 0.03
Matches are distributed among these distances:
550 15 0.03
551 436 0.76
552 126 0.22
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (551 bp):
GGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCATCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATGGACCAGACCGAGGATTGTGATAGCAAGACCAGCAGCAGGATCGACAGAACACAG
GGGGGATCGGGTCGATCCCCGACTTGCACATTCTACCTCTTCGGTCGACCTCTCCAACCGACTAA
GCGCCTGCACACGCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATAAGACCAGAATGAGGGTTACGACAGCAGGATCAGTAGCACAC
AGGGGGGACCGAACCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGACTAAGCACCCGCACG
CCCATTTCATGGGTTGGCTGAGGCATAGGGAATTCATTCCACGTCTAAGCCCCAAGCAGACCGAG
GGTTCTGGCAGCAGGACCAACAACACGCAGA
Found at i:18041853 original size:26 final size:26
Alignment explanation
Indices: 18041823--18041874 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18041813 GTTAACATAG
*
18041823 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCGAGTCTAA
* *
18041849 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATCCCGAGTCTAA
18041875 TATCAGACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCGAGTCTAA
Found at i:18042043 original size:26 final size:26
Alignment explanation
Indices: 18042007--18042059 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18041997 GTTGGCTTAG
*
18042007 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
18042033 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
18042059 G
1 G
18042060 AGTTAGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:18042779 original size:26 final size:26
Alignment explanation
Indices: 18042739--18042791 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18042729 GTTGGCTTAG
*
18042739 GCATACGGAGTTCATTCCCT-GTCTAA
1 GCATACGGAGCTCATT-CCTAGTCTAA
*
18042765 GCATATGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
18042791 G
1 G
18042792 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:18043327 original size:720 final size:727
Alignment explanation
Indices: 18041937--18043512 Score: 2454
Period size: 720 Copynumber: 2.2 Consensus size: 727
18041927 GATGGGTCAG
* *
18041937 TCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGTCCGCACGCTCGTTTTGTGGGTTGG
1 TCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGG
*
18042002 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAGTTAGA
66 CTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAGTTAGA
** *
18042067 GCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCTACATTTTTTTCGCCCGGGGCACCAT
131 GCCACGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTCGCCCGGGGCACCAT
*
18042132 CGTCGGAGCATCGTCGAAGCATCGCCAGAGAGCCTAACCGACGACATTAGAGGTTCCGACGATTG
196 CGTCGGAGCA-C-TC-AAGCATCG-CAGAGA-CCTAACCGAAGACATTAGAGGTTCCGACGATTG
** *
18042197 GGGGGCCGAGGGGTGTGCGCACACGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCC
256 GGGGGCCGAGGGGTGTGCGCACACGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
18042262 CCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
321 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTT
*
18042327 GCTGCCAGTTGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAACGGTCACAAAATCTTCT
386 GCTGCCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAACGGTCACAAAATCTTCT
* * *
18042392 CCACTTCGAGTTTTAGCTAAATGTTTTTGTGCATGCCAACCAAAATAGAAGGATCACCTCTACCA
451 CCACTTCGAGTTTTAGCTAAATGTTTTTGTACATGCCAACAAAAATACAAGGATCACCTCTACCA
* *
18042457 AATTTGGGGACAAAACACTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA
516 AATTTGGGGACAAAAAACTTTCTAAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAA
*
18042522 ATCGTGAAAAATACAAAACGGGTCGTCTTGCCACGAAACTTTACATGAAGGCGTAGGAGACCATT
581 ATCGTGAAAAATACAAAACGGGTCGTCTTGCCACGAAACTTTACATGAAGGCATAGGAGACCATT
18042587 GTATGAATTTACAAGTCATAAAAATGGCATTGGCATGGCAGGAATATGAAGATGTGCTTGAACCC
646 GTATGAATTTACAAGTCATAAAAATGGCATTGGCATGGCAGGAATATGAAGATGTGCTTGAACCC
18042652 ACCTACCACCCGTTCGA
711 ACCTACCACCCGTTCGA
* * *
18042669 TCCCCGGCTTGCACATTTTG-CTCCTCTGGCCGGCTAAGCG-CTCGCACGCTCGTTTCGTGGGTT
1 TCCCCGGCTTGCGCATTCTGCCT-CTCTGGCCGGCTGAGCGTC-CGCACGCTCGTTTCGTGGGTT
* * * *
18042732 GGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATATGGAGCTCATTCCTAGTCTAAGAGTTT
64 GGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAGTTA
* *
18042797 GAGCCATGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTCGCCTGGGGCACC
129 GAGCCACGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTCGCCCGGGGCACC
* * * *
18042862 ATCGTCGGAGCA-TC-A-C-T-G-AGAGA-CTAACCGATAG-CATTGGGGGTTCCGGCTATT-GG
194 ATCGTCGGAGCACTCAAGCATCGCAGAGACCTAACCGA-AGACATTAGAGGTTCCGACGATTGGG
* *
18042918 GGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
258 GGGCCGAGGGGTGTGCGCACACGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
18042983 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGC
323 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGC
* * * * * *
18043048 TGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCC
388 TGCCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCC
* * * *
18043113 ACTTTGAGCTTTTAGCTGAATTTTTTTGTACATTCCAACAAAAATACAAGGATCACCTCTACCAA
453 ACTTCGAG-TTTTAGCTAAATGTTTTTGTACATGCCAACAAAAATACAAGGATCACCTCTACCAA
*
18043178 ATTTGGTGACAAAAAACTTTCTAAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAA
517 ATTTGGGGACAAAAAACTTTCTAAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAA
18043243 TCGTGAAAAATACAAAACGGGTCGTCTTGCCACGAAACTTTACATGAAGGCATAGGAGACCATTG
582 TCGTGAAAAATACAAAACGGGTCGTCTTGCCACGAAACTTTACATGAAGGCATAGGAGACCATTG
*
18043308 TATGAATTTACAAGTCATAAAAATGGCATTGGCATGGCAGGAATATGAAGATGTGCTTGAACTCA
647 TATGAATTTACAAGTCATAAAAATGGCATTGGCATGGCAGGAATATGAAGATGTGCTTGAACCCA
18043373 CCTACCACCCGTTCGA
712 CCTACCACCCGTTCGA
* * * * * * *
18043389 TCCCCGGCTTGCGCATCCTGCCTCTTTGGTCGGCTGAGTGTCCGTACGCTCGTTTCATGGGTTGA
1 TCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGG
* * ** * * *
18043454 CTTATGCATACGGAGTTCATCCCCAATCTAAGCATACGAAGTTTATTCCCAGTCTAAGA
66 CTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGA
18043513 TAAGACCGGA
Statistics
Matches: 773, Mismatches: 65, Indels: 24
0.90 0.08 0.03
Matches are distributed among these distances:
719 190 0.25
720 380 0.49
721 4 0.01
722 5 0.01
724 1 0.00
725 1 0.00
726 1 0.00
727 1 0.00
729 2 0.00
731 3 0.00
732 185 0.24
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (727 bp):
TCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAGTTAGA
GCCACGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTCGCCCGGGGCACCAT
CGTCGGAGCACTCAAGCATCGCAGAGACCTAACCGAAGACATTAGAGGTTCCGACGATTGGGGGG
CCGAGGGGTGTGCGCACACGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGC
CAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACT
TCGAGTTTTAGCTAAATGTTTTTGTACATGCCAACAAAAATACAAGGATCACCTCTACCAAATTT
GGGGACAAAAAACTTTCTAAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCGT
GAAAAATACAAAACGGGTCGTCTTGCCACGAAACTTTACATGAAGGCATAGGAGACCATTGTATG
AATTTACAAGTCATAAAAATGGCATTGGCATGGCAGGAATATGAAGATGTGCTTGAACCCACCTA
CCACCCGTTCGA
Found at i:18043489 original size:26 final size:26
Alignment explanation
Indices: 18043459--18043511 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18043449 GTTGACTTAT
*
18043459 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
18043485 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
18043511 G
1 G
18043512 ATAAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:18043792 original size:159 final size:158
Alignment explanation
Indices: 18043548--18043988 Score: 462
Period size: 159 Copynumber: 2.8 Consensus size: 158
18043538 GCAGCATCCG
* ** * * * *
18043548 CAGCACGCAGGAGGGACCGGATCGATCCCTGACTTGCGCATT-CGACCTCTCCGGCCGGCTGAGC
1 CAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTATG-CCTCTCC-GCCGGCTGAGC
* * * * *
18043612 ACCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
64 GCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* ** * * *
18043677 C-AGACT-GAGGGTTGTGGCAGCGGGACT-AG
129 CTAGA-TAGAAGGTTGCAGCAACAGGA-TGAA
* **
18043706 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCAGCCGGCACAGC
1 CAGCACGCAG-GAGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCC-GCCGGCTGAGC
* * *
18043771 GCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCAAAG-ATCAG
64 GCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG
*
18043834 ACTGGATAGAAGGTTGCAGCAACAGGATGAA
128 ACTAGATAGAAGGTTGCAGCAACAGGATGAA
* * *
18043865 CAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTG
1 CAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCG-CCGGCTGAGCG
* * * * * *
18043930 CCCGAACGCTCGTTTCGTGGGTTAGCATAGGCATACAGAGTTCATTCCATGTCTAAGCA
65 CCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
18043989 TACGAAGTTC
Statistics
Matches: 234, Mismatches: 40, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.00
158 111 0.47
159 121 0.52
160 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
CAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGCCGGCTGAGCGC
CCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACT
AGATAGAAGGTTGCAGCAACAGGATGAA
Found at i:18043997 original size:26 final size:26
Alignment explanation
Indices: 18043960--18044012 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18043950 GTTAGCATAG
18043960 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
18043986 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCTAGTCTAA
18044012 G
1 G
18044013 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:18044345 original size:25 final size:26
Alignment explanation
Indices: 18044317--18044366 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
18044307 GTTGACTTAG
18044317 GCATACGGAGTTCA-CCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAGTCTAT
*
18044342 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
18044367 AGATCAAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAT
Found at i:18044702 original size:26 final size:26
Alignment explanation
Indices: 18044659--18044711 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
18044649 GTTGGCTTAG
18044659 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTTATTCCCA-GTCTAA
*
18044685 GCATATGGAGTTCT-TTCCCAGTCTAA
1 GCATACGGAGTT-TATTCCCAGTCTAA
18044711 G
1 G
18044712 AGTTTGAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCCAGTCTAA
Found at i:18045420 original size:26 final size:26
Alignment explanation
Indices: 18045384--18045436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18045374 GTTGACTTAG
18045384 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18045410 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18045436 G
1 G
18045437 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18045598 original size:26 final size:26
Alignment explanation
Indices: 18045569--18045621 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18045559 GTTGCCTTAG
18045569 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18045595 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18045621 G
1 G
18045622 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18045814 original size:26 final size:26
Alignment explanation
Indices: 18045778--18045830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18045768 GTTGACTTAG
18045778 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
18045804 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18045830 G
1 G
18045831 ATCTAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18046157 original size:26 final size:26
Alignment explanation
Indices: 18046121--18046173 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18046111 GTTGGCTTAG
18046121 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
18046147 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18046173 G
1 G
18046174 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18047198 original size:159 final size:157
Alignment explanation
Indices: 18046805--18047335 Score: 431
Period size: 159 Copynumber: 3.3 Consensus size: 157
18046795 GACTGAGTGT
* * *
18046805 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAGTCTAAGATCAGACCG
* * * * * *
18046870 AATTGAGGGTTGCGGTAGTAGGATTAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACG
65 GACTGAGGGTTGTGGCAGCAGGACTAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACG
* *
18046935 CATTCTGCCTATCCGGTCGGCTGAGCAC
130 CATTATGCCTATCCGATCGGCTGAGCAC
* * * **
18046963 CCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTAAG-ATCAGACC
* * * * * * *
18047027 AGACCGATGGTTGTGGCAGCGGGACCTA-CAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTT
64 GGACTGAGGGTTGTGGCAGCAGGA-CTAGCAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTT
* * * * * **
18047091 GCGCATTATGCCTCTCTGATTGGCTTAGTGC
127 ACGCATTATGCCTATCCGATCGGCTGAGCAC
* * * *
18047122 CTGCACGCTCATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCTAGTGTAAGATTAGACCG
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC-AGTCTAAGATCAGACCG
* * * ** * * * *
18047187 GACTGAGGGTTGTGACAGTAGGA-TCG-ATTGCACATAGGGGTAGACTGGGTCGATCCCCGTCTT
65 GACTGAGGGTTGTGGCAGCAGGACTAGCA--GCACGCAGGGG-GGACCGGGCCGATCCCCGACTT
* * * * * * * ** **
18047250 GCACTTTCTACCTCTTCGGCCGGCTGAGTGC
127 ACGCATTATGCCTATCCGATCGGCTGAGCAC
** *
18047281 CCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTAA
18047336 TCATACAGAG
Statistics
Matches: 292, Mismatches: 70, Indels: 21
0.76 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 79 0.27
159 207 0.71
160 1 0.00
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (157 bp):
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGTCTAAGATCAGACCGG
ACTGAGGGTTGTGGCAGCAGGACTAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGC
ATTATGCCTATCCGATCGGCTGAGCAC
Found at i:18048405 original size:26 final size:26
Alignment explanation
Indices: 18048375--18048425 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18048365 TTGACTTAGG
18048375 CATACGAAGTTCATT-CCATGTCTAAC
1 CATACGAAGTTCATTCCCA-GTCTAAC
*
18048401 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
18048426 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:18048538 original size:22 final size:22
Alignment explanation
Indices: 18048496--18048539 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
18048486 CCCGGGGCAC
* *
18048496 CATCGTCGGAGCATCCCCGGAG
1 CATCATCGGAGCATCACCGGAG
*
18048518 CATCATCGGAGCATCATCGGAG
1 CATCATCGGAGCATCACCGGAG
18048540 AGCCTAACCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.32, G:0.30, T:0.16
Consensus pattern (22 bp):
CATCATCGGAGCATCACCGGAG
Found at i:18049475 original size:159 final size:159
Alignment explanation
Indices: 18049291--18049648 Score: 382
Period size: 159 Copynumber: 2.3 Consensus size: 159
18049281 GCCCATTTTG
* * * *
18049291 TGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CC-GAACCGAGGGTTGTG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACC-AGACCAG-ACCGAGGGTTGCG
*** * * * *
18049354 GCAGTGGGATCGGCAGGACG-TAGAGGGGGACCGGGTCGATCCCCGAATTGCGCATTATGCCTCT
64 GCAGCAAGATCGACAGCACGCAAG-GGGGGACCGGGTCGATCCCCGAATTGCGCATTATACCTCT
18049418 CCAGTCGGCTCAGCACCCACACGCTCATTTCA
128 CCAGTCGGCTCAGCACCCACACGCTCATTTCA
* * * * * *
18049450 TTGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGATGGTTGCGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGCGG
* * * * * *
18049514 TAGCAAGATCGATAGCACGCAAGGGGGGACCGGGTCGGTCCCCGACTTGTGCATTCTACCTCTCC
65 CAGCAAGATCGACAGCACGCAAGGGGGGACCGGGTCGATCCCCGAATTGCGCATTATACCTCTCC
* * * * * *
18049579 GGTCGGTTGAGCGCCCGCACGCTCATTTCG
130 AGTCGGCTCAGCACCCACACGCTCATTTCA
*
18049609 TGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
18049649 GATACGGAGT
Statistics
Matches: 161, Mismatches: 33, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
158 5 0.03
159 150 0.93
160 6 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGC
AGCAAGATCGACAGCACGCAAGGGGGGACCGGGTCGATCCCCGAATTGCGCATTATACCTCTCCA
GTCGGCTCAGCACCCACACGCTCATTTCA
Found at i:18049660 original size:26 final size:26
Alignment explanation
Indices: 18049624--18049674 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18049614 TGGCTTAGCC
18049624 ATACGGAGTTCATTCC-ATGTCTAAGG
1 ATACGGAGTTCATTCCTA-GTCTAAGG
18049650 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
18049675 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGG
Found at i:18050040 original size:26 final size:26
Alignment explanation
Indices: 18050003--18050061 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
18049993 GCTGACTTAG
*
18050003 GCATACGTAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
18050029 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18050055 -CAT-CGGA
1 GCATACGGA
18050062 CCGGACTGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 20 0.65
27 4 0.13
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18050895 original size:26 final size:24
Alignment explanation
Indices: 18050866--18050914 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
18050856 GCATTGGAAA
18050866 TTCATCCCCAGTCTAAGCATACAGAG
1 TTCATCCCCAGTCTAA-CAT-CAGAG
*
18050892 TTCATTCCCAGTCTAACATCAGA
1 TTCATCCCCAGTCTAACATCAGA
18050915 TCGGATCGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 3 0.14
26 15 0.68
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.27
Consensus pattern (24 bp):
TTCATCCCCAGTCTAACATCAGAG
Found at i:18052235 original size:26 final size:26
Alignment explanation
Indices: 18052206--18052256 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18052196 TTGGCTTAGG
*
18052206 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACAGAGTTCATTCCCA-GTCTAAA
18052232 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
18052257 GGTTGGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:18052602 original size:26 final size:26
Alignment explanation
Indices: 18052572--18052624 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18052562 GTTGGCCTAG
18052572 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
18052598 GCATACGGGGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18052624 G
1 G
18052625 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18053621 original size:159 final size:158
Alignment explanation
Indices: 18053223--18053640 Score: 421
Period size: 158 Copynumber: 2.6 Consensus size: 158
18053213 TACCACCCGT
* * * * * ** * * *
18053223 TCGATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCTGTATGCTCGTTTTGTGGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCACCTGCACGCTCGTTTCGTGGG
* *
18053288 TTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGTA
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCA
* * * * *
18053353 GGATTGGCATCACGCAGGGGAGATCGAG
131 GGATCGACATCAAGCAGGGGAGACCAAG
* * * * * * * * * *
18053381 CCAATCCTCGACTTACACATTATGCCTTTCCGGCCGGCTCAGCACCCT-CACGCTCATTTCGTGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCA-CCTGCACGCTCGTTTCGTGG
* ** * * * **
18053445 GTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGTGGTAGC
65 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGC
*
18053510 AGGATCGAC-TGCAAGCAGGAGGGGACCAAG
130 AGGATCGACAT-CAAGCAGG-GGAGACCAAG
* *
18053540 TCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTAAGCACCTGCACGCTCGTTTCATGGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCACCTGCACGCTCGTTTCGTGGG
18053605 TT-AGCTTAGGCATACGGAGTTCATT-CCACGTCTAAG
66 TTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
18053641 CATACGGAGT
Statistics
Matches: 206, Mismatches: 48, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 118 0.57
159 87 0.42
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (158 bp):
TCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCACCTGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCA
GGATCGACATCAAGCAGGGGAGACCAAG
Found at i:18053644 original size:26 final size:26
Alignment explanation
Indices: 18053614--18053666 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18053604 GTTAGCTTAG
18053614 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
18053640 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
18053666 G
1 G
18053667 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:18053952 original size:171 final size:171
Alignment explanation
Indices: 18053640--18053996 Score: 405
Period size: 171 Copynumber: 2.1 Consensus size: 171
18053630 CCACGTCTAA
* * * * *
18053640 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGACCAGACCGAACCGAAGGTTGCGGTAGAAGGACCAGCA
** * ** * * * *
18053705 GTAGGATTGGTAGCACGTAGGGAGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTTTTCGA
66 ACAGGATCGACAGCACGTAGGGAGGGACCGGGCCGATCCCCAGCTTACACATTATACCTCTTCGA
* * *
18053770 TAGGCTGAGTGCCCGGACGCTCATTTCTTGGGTTGGCTTAG
131 TAGGCTGAGTGCCCGGACGCTCATTTCATAGGTTGACTTAG
* *
18053811 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCGAAGGTTGTGGTAGAAGGACC-GA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGAACCGAAGGTTGCGGTAGAAGGACCAG-
* * ** *
18053874 CAACAGGATCGACAGCACGTAGAGG-GGGACCGGGCTGATCCCTAGCTTATGCATTATGCCTCTT
64 CAACAGGATCGACAGCACGTAG-GGAGGGACCGGGCCGATCCCCAGCTTACACATTATACCTCTT
* * * * *
18053938 CGGTCGGTTGAGTGCCCGTACGCTCGTTTCATAGGTTGACTTAG
128 CGATAGGCTGAGTGCCCGGACGCTCATTTCATAGGTTGACTTAG
18053982 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
18053997 CCCCAATCTA
Statistics
Matches: 154, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
170 1 0.01
171 148 0.96
172 5 0.03
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCGAACCGAAGGTTGCGGTAGAAGGACCAGCA
ACAGGATCGACAGCACGTAGGGAGGGACCGGGCCGATCCCCAGCTTACACATTATACCTCTTCGA
TAGGCTGAGTGCCCGGACGCTCATTTCATAGGTTGACTTAG
Found at i:18054012 original size:26 final size:26
Alignment explanation
Indices: 18053982--18054034 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18053972 GTTGACTTAG
*
18053982 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
18054008 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
18054034 G
1 G
18054035 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:18054379 original size:159 final size:155
Alignment explanation
Indices: 18054008--18054504 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 155
18053998 CCCAATCTAA
* * * * * *
18054008 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGAATCGATA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGC-GGATCGACA
* * * * * **
18054073 GCACGCAGGGGGGACCGGGTCAATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGTTGAGTGCC
65 GCACGCAGGGGGGA-CGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
* *
18054138 CGTACGCCCATTTCGTGGGTT-AGCTTAG
129 CGTAC-CTCGTTTCGTGGGTTGA-CTTAG
* * ** *
18054166 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTC-GCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCAAGTCTAAG-ATCAGACCGGACCGAGGGTT-ACGGCAGC-GGATC-G
* * * * * * * *
18054228 GCAGCATGCAGAGGGGGATCGAGCCGATCCCCGACTTGCGTATTATGCCTCTCCAGCTGGCTCAG
62 ACAGCACGCAG-GGGGGA-CGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
18054293 CACCCGTACACTCGTTTCGTGGGTTGACTTAG
125 CACCCGTAC-CTCGTTTCGTGGGTTGACTTAG
* *
18054325 GCATATGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGCATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGC-GGATCGACA
* * *
18054390 GCACGTAGGGGGAGACAAAGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA-
65 GCACGCAGGGGG-GAC-GAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
* *
18054454 -CG---CTCGTTTCGTGGTTTGATTTAG
128 CCGTACCTCGTTTCGTGGGTTGACTTAG
*
18054478 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCAAGTCTAAG
18054505 CATACGGAGT
Statistics
Matches: 276, Mismatches: 53, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
153 45 0.16
157 3 0.01
158 60 0.22
159 166 0.60
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCGGATCGACAG
CACGCAGGGGGGACGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG
TACCTCGTTTCGTGGGTTGACTTAG
Found at i:18054514 original size:26 final size:26
Alignment explanation
Indices: 18054478--18054530 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18054468 TTTGATTTAG
18054478 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
18054504 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18054530 G
1 G
18054531 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18055525 original size:158 final size:157
Alignment explanation
Indices: 18055234--18055692 Score: 485
Period size: 158 Copynumber: 2.9 Consensus size: 157
18055224 CTTAGCATAT
* * *
18055234 GGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCT
1 GGGTTGCGGTAGCAGGATCGACAGCAC-CAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCT
* * * * * * * *
18055299 ACCTCTCCGACCGACTGAGCGCTCGCATGCTCGTTTCATCGGTTGGCTTAGGCATAGGGAGTTTA
65 ACCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* *
18055364 TTCCATGTTTAA-ACCCAG-CCAGACTGA
130 TTCCATGTCTAAGA-CCAGACCAGACCGA
* * * *
18055391 GGGTTGTGGTAGCGGGATCGACAGCACACAGAGGGGGATCGGGCCAATCCCTGGCTTGCGCATTA
1 GGGTTGCGGTAGCAGGATCGACAGCAC-CAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTC
* * * * *
18055456 TGCCTCTCCGGCCGGCTCAGCACCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTC
64 TACCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* *
18055521 ATTCCCA-GTCTAAGATCAGACCGGACCGA
129 ATT-CCATGTCTAAGACCAGACCAGACCGA
** * * ** * * * *
18055550 GGGTTGCGACAGCAGGACCGATAGCACGTGGGGGGGATCAGGCCGGT-CCTCAGCTTGTGCATTC
1 GGGTTGCGGTAGCAGGATCGACAGCAC-CAGGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTC
* * * *
18055614 TTCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
64 TACCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
18055679 ATTCCATGTCTAAG
129 ATTCCATGTCTAAG
18055693 CATACGGAGT
Statistics
Matches: 248, Mismatches: 48, Indels: 11
0.81 0.16 0.04
Matches are distributed among these distances:
157 33 0.13
158 182 0.73
159 33 0.13
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GGGTTGCGGTAGCAGGATCGACAGCACCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTA
CCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGACCAGACCAGACCGA
Found at i:18055702 original size:26 final size:26
Alignment explanation
Indices: 18055666--18055718 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18055656 GTTGGCTTAG
18055666 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
18055692 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18055718 G
1 G
18055719 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18056513 original size:26 final size:26
Alignment explanation
Indices: 18056462--18056514 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18056452 GTTGACTTAG
**
18056462 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
*
18056488 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
18056514 G
1 G
18056515 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAACCTAA
Found at i:18056821 original size:159 final size:157
Alignment explanation
Indices: 18056488--18056830 Score: 384
Period size: 159 Copynumber: 2.2 Consensus size: 157
18056478 CCCAGTCTAA
** * * *
18056488 GCATACGGAGTTCATTCCCAACCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGATAGCAAGATCGACA
* * * * * *
18056553 GCACGCAGGGGGACCGGACCGATCCCCGGCTTGCTCATTCTGCCTCTCCGGTTGGCTCAGCGCCC
66 ACAAGCAGGGGGACCGGACCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTCAGCGCCC
* * *
18056618 GTACACTCGTTTTGTGGGTTGACTTAG
131 GCACACTCGTTTCGAGGGTTGACTTAG
*
18056645 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCGAGGGTTGCGATAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-AGACCGAGGGTTGCGATAGCAAGATCGAC
* * * * * * * * * *
18056709 AATAAGCAGGGGAAGACTGGGCTGGTCCCTGGCTTACGCATTCTACTTCTTCGGTCGGTTGAGCG
65 AACAAGCAGGGG--GACCGGACCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTCAGCG
* *
18056774 CCCGCACGCTCGTTTCGAGGGTTGGCTTAG
128 CCCGCACACTCGTTTCGAGGGTTGACTTAG
*
18056804 GCATACGGAGTTTATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
18056831 CCCCAGCCGG
Statistics
Matches: 154, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
156 1 0.01
157 65 0.42
158 3 0.02
159 85 0.55
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGATAGCAAGATCGACA
ACAAGCAGGGGGACCGGACCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTCAGCGCCC
GCACACTCGTTTCGAGGGTTGACTTAG
Found at i:18057383 original size:26 final size:26
Alignment explanation
Indices: 18057353--18057405 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18057343 GTTGACTTGG
*
18057353 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18057379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18057405 G
1 G
18057406 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18057905 original size:26 final size:26
Alignment explanation
Indices: 18057854--18057906 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18057844 GTTGGCTTAG
*
18057854 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
18057880 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
18057906 G
1 G
18057907 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:18058586 original size:26 final size:26
Alignment explanation
Indices: 18058556--18058608 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18058546 GTTGACATAG
*
18058556 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
* *
18058582 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
18058608 G
1 G
18058609 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:18059475 original size:26 final size:26
Alignment explanation
Indices: 18059425--18059477 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
18059415 GTTGGCTTAG
*
18059425 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
18059451 GCATACGGAA-TTCATTCCCA-ATCTAA
1 GCATAC-GAAGTTCATT-CCATATCTAA
18059477 G
1 G
18059478 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:18059866 original size:148 final size:148
Alignment explanation
Indices: 18059596--18059881 Score: 376
Period size: 148 Copynumber: 1.9 Consensus size: 148
18059586 GAGTGCCTGC
18059596 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCGAACCGGATC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCGAACCGGATC
* * * * *
18059661 AAAGGTTGCGGTAGTAAGATCGACAGCACGCAGAGGGGACCGGGCCAATCCCTGGCTTGCTCATT
66 AAAGGTTGCGGCAGTAAGATCGACAACAAGCAGAGGGGACCGGGCCAATCCCCGGCTTGCGCATT
18059726 CTGCCTCTTCCGATTGGG
131 CTGCCTCTTCCGATTGGG
** * * * *
18059744 ACGCTCATTTTGTGGGTTGATTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGATCGGAT
1 ACGCTCATTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGCCTAAGATCGAACCGGAT
* * * * * * ***
18059808 CGAGGGTTGCGGCAGTAGGATCGATAACAAGCAGGGGGGACTGGGCTGGTCCCCGGCTTGCGCAT
65 CAAAGGTTGCGGCAGTAAGATCGACAACAAGCAGAGGGGACCGGGCCAATCCCCGGCTTGCGCAT
18059873 TCTGCCTCT
130 TCTGCCTCT
18059882 CCAGTCGACT
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
147 1 0.01
148 116 0.99
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.25
Consensus pattern (148 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCGAACCGGATC
AAAGGTTGCGGCAGTAAGATCGACAACAAGCAGAGGGGACCGGGCCAATCCCCGGCTTGCGCATT
CTGCCTCTTCCGATTGGG
Found at i:18059920 original size:502 final size:506
Alignment explanation
Indices: 18059014--18059954 Score: 1142
Period size: 502 Copynumber: 1.9 Consensus size: 506
18059004 TCGGATCGGT
* * *
18059014 AGCACGTAGGGGGGACCAAGCCGATCCTCGACTTACGCATTCTGCCTCTCTGACCGGCTGAGTGC
1 AGCACGCAGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTGCCTCTCAGACCGGCTGAGTGC
* ** ** * * **
18059079 CCGCACATCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGTCG
66 CCGCACATCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGACCCAACCG
* * * * *
18059144 GATCGAGGGTTATGGCAGTGAGACCGACAGCACGAAGAGGGGGACCAGGCCGATCCCCGGCTTGC
131 GATCAAAGGTTACGGCAGTAAGACCGACAGCACGAAGAGGGGGACCAGGCCAATCCCCGGCTTGC
*
18059209 GCATTATCCCTCTTCGGTCGGTTCAACGTCTGAACGCTCATTTTGTGGGTTGACCTAGGCATACA
196 GCATTATCCCTCTTC-G-CGATT--A-G--TGAACGCTCATTTTGTGGGTTGACCTAGGCATACA
* * * * *
18059274 GAGTTCATTCCCAGTCTAAGATCGGGCTGGACCAAGGGTTGTGGTAGCAAGATCGACAGCATGTA
254 GAGTTCATTCCCAGTCTAAGATCGGGCTGGACCAAGGGTTGCGGCAGCAAGATCGACAACAAGCA
* * *
18059339 GGAAGGACCGGGCCAGTCCCCGACTCGCACATTTTGCCTCTCTGATCGACTGAGCACCCGCACGT
319 GGAAGGACCGGGCCAGTCCCCGACTCGCACATTCTGCCTCTCAGATCGACTGAGCACCCGCACGC
** *
18059404 TTGTTTCCTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAATTCATTCC
384 TCATTTCCTGGGTTGCCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAATTCATTCC
18059469 CAATCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGTCCGATAGCAGGATCGAC
449 CAATCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGTCCGATAGCAGGATCGAC
* * *
18059527 AGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCAGATCGGCTGAGTGC
1 AGCACGCAGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTGCCTCTCAGACCGGCTGAGTGC
* * * *
18059592 CTGCAC-GCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCGAACC
66 CCGCACATC-CATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGACCCAACC
* * * * * *
18059656 GGATCAAAGGTTGCGGTAGTAAGATCGACAGCACGCAGA-GGGGACCGGGCCAATCCCTGGCTTG
130 GGATCAAAGGTTACGGCAGTAAGACCGACAGCACGAAGAGGGGGACCAGGCCAATCCCCGGCTTG
* * * * **
18059720 CTCATTCTGCCTCTTC-CGATT-G-GGACGCTCATTTTGTGGGTTGATTTAGGCATAC-GAAGTT
195 CGCATTATCCCTCTTCGCGATTAGTGAACGCTCATTTTGTGGGTTGACCTAGGCATACAG-AGTT
* * * * * * **
18059781 CATTCCCAGTCTAAGATC-GGATCGGATCGAGGGTTGCGGCAGTAGGATCGATAACAAGCAGGGG
259 CATTCCCAGTCTAAGATCGGGCT-GGACCAAGGGTTGCGGCAGCAAGATCGACAACAAGCAGGAA
* ** * * * *
18059845 GGACTGGGCTGGTCCCCGGCTTGCGCATTCTGCCTCTCCAG-TCGACTGAGCGCCCGCACGCTCA
323 GGACCGGGCCAGTCCCCGACTCGCACATTCTGCCTCT-CAGATCGACTGAGCACCCGCACGCTCA
* *
18059909 TTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
387 TTTCCTGGGTTGCCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
18059955 CTCAGCCGGA
Statistics
Matches: 359, Mismatches: 65, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
501 4 0.01
502 173 0.48
503 2 0.01
505 1 0.00
509 4 0.01
512 36 0.10
513 139 0.39
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (506 bp):
AGCACGCAGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTGCCTCTCAGACCGGCTGAGTGC
CCGCACATCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGACCCAACCG
GATCAAAGGTTACGGCAGTAAGACCGACAGCACGAAGAGGGGGACCAGGCCAATCCCCGGCTTGC
GCATTATCCCTCTTCGCGATTAGTGAACGCTCATTTTGTGGGTTGACCTAGGCATACAGAGTTCA
TTCCCAGTCTAAGATCGGGCTGGACCAAGGGTTGCGGCAGCAAGATCGACAACAAGCAGGAAGGA
CCGGGCCAGTCCCCGACTCGCACATTCTGCCTCTCAGATCGACTGAGCACCCGCACGCTCATTTC
CTGGGTTGCCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCCAATCTA
AGATCAGACCGAATCGAGGGTTGCGGCAGCAGGTCCGATAGCAGGATCGAC
Found at i:18060128 original size:26 final size:26
Alignment explanation
Indices: 18060098--18060150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18060088 GTTGACATAG
18060098 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
18060124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18060150 G
1 G
18060151 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18060497 original size:26 final size:26
Alignment explanation
Indices: 18060467--18060519 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18060457 GTTGACTTGG
18060467 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18060493 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18060519 G
1 G
18060520 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18060741 original size:369 final size:360
Alignment explanation
Indices: 18059769--18060777 Score: 841
Period size: 356 Copynumber: 2.8 Consensus size: 360
18059759 GTTGATTTAG
* * * *
18059769 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* ** * * * * * *
18059834 ACA-AGCA-GGGGGGA-CTGGGCTGGTCCCCGGCTTGCGCATTCTGCCTCTCCAG-TCGACTGAG
66 GCACA-CAGGGGGGGACCAAGTC-GATCCCTGACTTGCGCATTCTGCCTCTCCGGCT-GCCTGAG
* * * * * * ** * *
18059895 CGCCCGCACGCTCATTTCGTGGGTTG-CCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCA
128 TGCCCGCACGCTCGTTTCATGGGTAGACC-AAGCCATACAAAGTTCATTCCATGTCCAAGCCCCA
* * * * * *
18059959 GCCGGACCGAGGGTTGTGGTAGTAGGACCGACAACGGGATCAG-CAGCACGCAGAAGGCGATCGA
192 GTCGGACCGA-GG--GT--TAGT---A-CGGCAGCGGGAT-AGACAGCACGCAGAGGGGGACCGA
* * *
18060023 GTTGATCCATAGCTTGCGCATTATGCCTCTCCGA---------C----CGGCTGAGCGCCCGCAC
247 GTCGATCCACAGCTTGCGCATTATGCCTCTCCGACTGGCCTCTCTTGTCGGCTGAGCGCCCACAC
*
18060075 GCTCGTTTCATGGGTTGACATAGGCATACGAAGTTCATCCCCAGTCTAA
312 GCTCATTTCATGGGTTGACATAGGCATACGAAGTTCATCCCCAGTCTAA
18060124 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* *
18060189 GCATACAGGGGGGGACCAAGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTGC
66 GCACACAGGGGGGGACCAAGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGCCTGAGTGC
* * * * *
18060254 CCGCACGCTCGTTTCGTGGGTTGACCAAGGCGTACGAAGTTCATTCCATGTCCAAGCCCCAGTCG
131 CCGCACGCTCGTTTCATGGGTAGACCAAGCCATACAAAGTTCATTCCATGTCCAAGCCCCAGTCG
* * *
18060319 GACCGAGGGTTATGGTAGCAGGACCGGCAGCGGGATTGACAGCACGCAGAGGGGGATCG-GGCTG
196 GACCGAGGGTTA--GT------A-CGGCAGCGGGATAGACAGCACGCAGAGGGGGACCGAGTC-G
18060383 ATCCACAGCTTGCGCATTATGCCTCTCCGACTGGCCTCTCTTGTCGGCTGAGCGCCCACACGCTC
251 ATCCACAGCTTGCGCATTATGCCTCTCCGACTGGCCTCTCTTGTCGGCTGAGCGCCCACACGCTC
* * * *
18060448 ATTTCATTGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAA
316 ATTTCATGGGTTGACATAGGCATACGAAGTTCATCCCCAGTCTAA
** *
18060493 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGGTGGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-T----T-GC-GG--CAGCA
* * * * * * *
18060558 GCAAGATCGATAGCACGCAGGGGGGGATC-GGGCTGATCCCTGGCTTGCGCATTCTTCCTCTTCG
57 G---GATCGATAGCACACAGGGGGGGACCAAGTC-GATCCCTGACTTGCGCATTCTGCCTCTCCG
** ** *
18060622 G-TCGACCT-CTTGCCCGCACGCTCGTTTCATGGGTCAG-CTTAGCCATACAAAGTTTATTCCAT
118 GCT-G-CCTGAGTGCCCGCACGCTCGTTTCATGGGT-AGACCAAGCCATACAAAGTTCATTCCAT
* * * *
18060684 GTCTAAGCCCCAGTCGGACCGAGGGTTA-T-C-GCAGTGGGATCAG-CAGCATGTAGAGGGGGAC
180 GTCCAAGCCCCAGTCGGACCGAGGGTTAGTACGGCAGCGGGAT-AGACAGCACGCAGAGGGGGAC
* *
18060745 CGAGTCGATCCCCGGCTTGCGCATTATGCCTCT
244 CGAGTCGATCCACAGCTTGCGCATTATGCCTCT
18060778 TTGGTCGGCT
Statistics
Matches: 545, Mismatches: 66, Indels: 72
0.80 0.10 0.11
Matches are distributed among these distances:
351 2 0.00
353 4 0.01
355 69 0.13
356 167 0.31
357 6 0.01
365 1 0.00
369 153 0.28
370 5 0.01
374 1 0.00
375 2 0.00
376 2 0.00
378 7 0.01
380 3 0.01
381 120 0.22
382 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (360 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACACAGGGGGGGACCAAGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGCCTGAGTGC
CCGCACGCTCGTTTCATGGGTAGACCAAGCCATACAAAGTTCATTCCATGTCCAAGCCCCAGTCG
GACCGAGGGTTAGTACGGCAGCGGGATAGACAGCACGCAGAGGGGGACCGAGTCGATCCACAGCT
TGCGCATTATGCCTCTCCGACTGGCCTCTCTTGTCGGCTGAGCGCCCACACGCTCATTTCATGGG
TTGACATAGGCATACGAAGTTCATCCCCAGTCTAA
Found at i:18060946 original size:158 final size:159
Alignment explanation
Indices: 18060562--18060952 Score: 452
Period size: 159 Copynumber: 2.5 Consensus size: 159
18060552 CCAGCAGCAA
* * * *
18060562 GATCGATAGCACGCAGGGGGGGATCGGG-CTGATCCCTGGCTTGCGCATTCTTCCTCTTCGGTCG
1 GATCGACAGCACGCAGAGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATTCCTCTTCGGTCG
* * * * *
18060626 ACCTC-TTGCCCGCACGCTCGTTTCATGGGTCAGCTTAGCCATACAAAGTTTATTCCATGTCTAA
65 -GCTCAGTGCCCGCACGCCCATTTCATGGGTCAGCTTAGCCATACAAAGTTCATTCCATGTCTAA
* ***
18060690 GCCCCAGTCGGACCGAGGGTTATCGCAGTGG
129 GCCCCAGCCGGACCGAGGGTTATCGCAACAG
* * * * * *
18060721 GATC-AGCAGCATGTAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTTTGGTCG
1 GATCGA-CAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTCG
* * ** * *
18060785 GCTCAGTGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGC-GAGTTCATTCCATGTCTAA
65 GCTCAGTGCCCGCACGCCCATTTCATGGGTCAGCTTAGCCATA-CAAAGTTCATTCCATGTCTAA
* *
18060849 GCCCCAGCCGGACCGA-GGTTGTGGCAACAG
129 GCCCCAGCCGGACCGAGGGTTATCGCAACAG
18060879 GATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGG-CTG
1 GATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTC-G
18060943 GCTCAGTGCC
65 GCTCAGTGCC
18060953 TGAACATTCG
Statistics
Matches: 193, Mismatches: 33, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 77 0.40
159 113 0.59
160 2 0.01
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
GATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTCGG
CTCAGTGCCCGCACGCCCATTTCATGGGTCAGCTTAGCCATACAAAGTTCATTCCATGTCTAAGC
CCCAGCCGGACCGAGGGTTATCGCAACAG
Found at i:18060974 original size:158 final size:159
Alignment explanation
Indices: 18060562--18061143 Score: 479
Period size: 158 Copynumber: 3.7 Consensus size: 159
18060552 CCAGCAGCAA
* * * *
18060562 GATCGATAGCACGCAGGGGGGGATCGGG-CTGATCCCTGGCTTGCGCATTCTTCCTCTTCGGTCG
1 GATCGACAGCACGCAGAGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATTCCTCTTCGGTCG
* * * ** * *
18060626 ACCTC-TTGCCCGCACGCTCGTTTCATGGGTCAGCTTAGCCATA-CAAAGTTTATTCCATGTCTA
65 -GCTCAGTGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATAGC-GAGTTTATTCCATGTCTA
* ***
18060689 AGCCCCAGTCGGACCGAGGGTTATCGCAGTGG
128 AGCCCCAGCCGGACCGAGGGTTATCGCAACAG
* * * * * *
18060721 GATC-AGCAGCATGTAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTTTGGTCG
1 GATCGA-CAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTCG
* * * * *
18060785 GCTCAGTGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAG
65 GCTCAGTGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATAGCGAGTTTATTCCATGTCTAAG
* *
18060850 CCCCAGCCGGACCGA-GGTTGTGGCAACAG
130 CCCCAGCCGGACCGAGGGTTATCGCAACAG
18060879 GATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGG-CTG
1 GATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTC-G
* ** * * *
18060943 GCTCAGTGCCTGAACATTCGTTTCATAGGTTGACTTACGCATATG-GAGTTTATTTCCA-GTCTA
65 GCTCAGTGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATA-GCGAGTTTA-TTCCATGTCTA
**** * **
18061006 AG-ATTGGATCGGACTAAGGG--ATGCGACAACAG
128 AGCCCCAG-CCGGACCGAGGGTTAT-CG-CAACAG
* * * * * * * *
18061038 GATCGACAACACGCAG-GGGGGATCGGGTCGATCCTC-GATTGGTGCTTTCTGCCTCTTCGGCCG
1 GATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTT-GCGCATTATTCCTCTTCGGTCG
* * * ** *
18061101 GTTGAGCGCCCGTGCGCTCATTTCATGGGTTGGCTTAGGCATA
65 GCTCAGTGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATA
18061144 CAGAGTTCAT
Statistics
Matches: 337, Mismatches: 72, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 186 0.55
159 143 0.42
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
GATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTTCGGTCGG
CTCAGTGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATAGCGAGTTTATTCCATGTCTAAGC
CCCAGCCGGACCGAGGGTTATCGCAACAG
Found at i:18061949 original size:26 final size:26
Alignment explanation
Indices: 18061919--18061971 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18061909 GTTGACTTAG
18061919 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
18061945 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
18061971 G
1 G
18061972 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:18062490 original size:26 final size:26
Alignment explanation
Indices: 18062437--18062492 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
18062427 TGGGTTGACT
* **
18062437 TAAGCATACGGAGTTCATCCCCCCTC
1 TAAGCATACAGAGTTCATCCCCAATC
* *
18062463 TAAGCATATAGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATCCCCAATC
18062489 TAAG
1 TAAG
18062493 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAATC
Found at i:18062781 original size:159 final size:158
Alignment explanation
Indices: 18062603--18062966 Score: 399
Period size: 158 Copynumber: 2.3 Consensus size: 158
18062593 CCTGTACACC
* * * ***
18062603 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAG-CTGGACCAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAAACCAAGG
** * * * * * * * *
18062667 GTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCAAGCTGATCCCCTGCTTGTGCATTATG
65 GTTGCAGCAGCAGGACCAACAGCACACAG-GGGGCATCAAGCTGAACCCCGGCTTGCGCATTATA
** * *
18062732 CCTCTCCGGTCGGCTCAGCGCCCGCACGCT
129 CCTCTCCGACCGACTCAGCACCCGCACGCT
* * *
18062762 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCAAACCAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCAAACCAAGG
* * ** * * *
18062826 GTTGCAGCAGCATGATCAACAGCACACAGGGGGCATCGGGTTGAACCCCGGCTTGCGTATTTTAC
65 GTTGCAGCAGCAGGACCAACAGCACACAGGGGGCATCAAGCTGAACCCCGGCTTGCGCATTATAC
*
18062891 CTCTCCGACCGACTGAGCACCCGCACGCT
130 CTCTCCGACCGACTCAGCACCCGCACGCT
*
18062920 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
18062967 CATACAGAGT
Statistics
Matches: 169, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
158 96 0.57
159 73 0.43
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCAAACCAAGGG
TTGCAGCAGCAGGACCAACAGCACACAGGGGGCATCAAGCTGAACCCCGGCTTGCGCATTATACC
TCTCCGACCGACTCAGCACCCGCACGCT
Found at i:18062970 original size:26 final size:26
Alignment explanation
Indices: 18062940--18062992 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18062930 GTTGGCTTAG
*
18062940 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
18062966 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
18062992 G
1 G
18062993 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:18064198 original size:159 final size:157
Alignment explanation
Indices: 18063687--18064383 Score: 512
Period size: 157 Copynumber: 4.3 Consensus size: 157
18063677 CCCAGTCTAA
* * * * * * * * *
18063687 GCATATGGAGCTCACTCCCAATCTAAGATCGGATCAGATCGAGGGTTACGGCAGCAGGATAGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
18063752 GCACGCA-GTGGGACCGGGCCAAT-CCCTGACTTACACATTCTGCCTCTTCGGCCGGCTGAGCGA
66 GCACGCAGGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTC-TCGGCCGGCTGAGCGC
18063815 CCGCACGC-CTGTTTCATGGGTTGGCTTAG
129 CCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * * * * *
18063844 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAG-CCGGACTGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATC-G
* * * ** * * * *
18063906 GCAGCACGTAGAGGGGGATCGGGCCGATCCCTGGTTTGCGCATT-TGCCTCTCGACCGGCTCAAC
63 ACAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCGGCCGGCTGAGC
* * * * *
18063970 ACCCGCACGCTCATTTCGTGGCTTGACTTAG
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
18064001 GCATACGGAGTTCATTCCTAGTCCAAGATCAGAACGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
18064066 GCACACAGGGGGGGACCAGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCA-GGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCT-CGGCCGGCTGAGCGC
* *
18064131 CCGTACACTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
18064160 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGAACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG-CG--GCAG---CAGGA
* * * * * * *
18064225 GCAAGATTGGAGCATGCAGGTGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGGC
60 TC--GA---CAGCACGCAGG-GGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCT-CGGC
* * * * *
18064290 CGACCGAGCGCCCGTACGCTCATTTCATGGGTTGGCATAG
118 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * *
18064330 GCAAACGGAGTTCGTT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAG
18064384 TAAGACCGGC
Statistics
Matches: 421, Mismatches: 92, Indels: 44
0.76 0.17 0.08
Matches are distributed among these distances:
156 7 0.02
157 157 0.37
158 21 0.05
159 96 0.23
160 4 0.01
162 3 0.01
165 5 0.01
167 6 0.01
169 6 0.01
170 113 0.27
171 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:18064545 original size:26 final size:26
Alignment explanation
Indices: 18064514--18064566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18064504 GTTGACTTAG
18064514 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
18064540 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
18064566 G
1 G
18064567 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:18064960 original size:159 final size:158
Alignment explanation
Indices: 18064540--18065032 Score: 492
Period size: 159 Copynumber: 3.1 Consensus size: 158
18064530 CCCAATCTAA
* * * * **
18064540 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGTGTTACGGCAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTACGGCAGCAGGATCGATA
** ** * * * * * * *
18064605 GCACGCA-AGAGGGACCGCACCGATCCCCAGCTTGTGCATTCTGTCTCTCCGGTCGGCTGAGTGC
66 GCACGCAGAG-GGGATTGGGCCGATCCCCGGTTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
* * * *
18064669 CCGCACACCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** ** * * *
18064698 GCATAGGGA-TTCAGT-CCATGTCTAAGCCCCAACCAGACCGAGAGTTATGGCAGCGGGA-CCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGAGTTACGGCAGCAGGATCGA-
* * * *
18064760 TAGCACGCAGAGGGGGATTGGGTCGATCCCTGGTTTGCGCATTATGCCTCTCCGACCGGCTCAGC
64 TAGCACGCAGA-GGGGATTGGGCCGATCCCCGGTTTGCGCATTATGCCTCTCCGATCGGCTGAGC
*
18064825 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
18064856 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTACGGCAGCAGGATCGATA
* * * *
18064921 GCACACAGGAGGGGATTGGGCCGATCCCCGGTTTACGCATTTTGCCTCT-CTAGTCGGCTGAGCG
66 GCACGCA-GAGGGGATTGGGCCGATCCCCGGTTTGCGCATTATGCCTCTCCGA-TCGGCTGAGCG
18064985 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
18065015 GCAGACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
18065033 ATGTCTAGGC
Statistics
Matches: 267, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 44 0.16
158 81 0.30
159 132 0.49
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTACGGCAGCAGGATCGATA
GCACGCAGAGGGGATTGGGCCGATCCCCGGTTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:18065419 original size:26 final size:26
Alignment explanation
Indices: 18065382--18065434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18065372 GTTAACTTAG
18065382 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
18065408 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
18065434 G
1 G
18065435 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:18065733 original size:368 final size:360
Alignment explanation
Indices: 18064979--18066296 Score: 1299
Period size: 368 Copynumber: 3.7 Consensus size: 360
18064969 TCTAGTCGGC
* * * * *
18064979 TGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAGAC-AGAGTTCAT-TCCATGTCTAGG
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATCCCCA-GTCTAAG
* * * ** *
18065042 CATACGGAGTTGATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTTGGA-CCAGCA
64 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CA
* * * * * * *
18065106 GCATGCAGGGGGGA-CTAGGCTGATCCCCAGCTTGCGCATTCTACCTTTCCGGCC-GATCGAGCA
128 GCATGCAGGGGGGATCGAGCCAGATCCCCGGCTTGCGCATTCTACCTCTCCGACCTGCT-GAGCA
* * * *
18065169 CTCGCA-GATCATTTCATGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCCCAGCT
192 CCCGCACGATCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * *
18065233 GGACCGAGGGTTGTGGCAGTAGGACCGGCAGCGGGATCAACAACATGTAGAGGGGGATCGGGCTG
257 GGACCGAGGGTTGTGGCAGCAAGA-CGACAGC-GGATC-ACAGCATGCAGAGGGGGACCGGGCTG
** * *
18065298 ATTTTCGGCTTGCGCATTATGCCTCTCAGGTTGGCCTCTCCGGTCGGT
319 ATCCTCGGCTTGCGCATTATG-C-CTC---TTCGCCTCTTCGG-CGGT
* * * *
18065346 TGAGCAG-CTGCACGCTCGTTTTGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAATCTAAGC
1 TGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* * * *
18065410 ATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGTGTTGCGGCAGCAGGATCGACAGC
65 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* *
18065475 ATGCAGGGGGGATCGAGTC-GATCCCCGGCTTGCGCATTCTACCTCTCCGACCTGCTG-GATACC
130 ATGCAGGGGGGATCGAGCCAGATCCCCGGCTTGCGCATTCTACCTCTCCGACCTGCTGAG-CACC
* * * *
18065538 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTATGCCCCAACCGG
194 CGCACGATCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGG
* *
18065603 ACCGAGGGTTGTGGCAGCAAGACTGACAGCAGGATCGACAGCACGCAGAGGGGGACCGAGCTGAT
259 ACCGAGGGTTGTGGCAGCAAGAC-GACAGC-GGATC-ACAGCATGCAGAGGGGGACCGGGCTGAT
* * * *
18065668 CCTCGACTTACGTATAATGCCTCTTCGACCAACCTCTTCGGCCGGT
321 CCTCGGCTTGCGCATTATGCCTCTTCG-----CCTCTTCGG-CGGT
* * *
18065714 TGAGCGCCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
** * ** *
18065779 TACAGAGTTCATTCCCAGTCTAAGATCAGATAGGACTGAGGGTTGCGGTGGTAGGATCGACAGCA
66 TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * ** **
18065844 TGCAGGGGGGACCG-GCCAGATCCCCGGCTTTCGCATTCTACCTCTCCGACCAACTGAGTGCCCG
131 TGCAGGGGGGATCGAGCCAGATCCCCGGCTTGCGCATTCTACCTCTCCGACCTGCTGAGCACCCG
* * * * *
18065908 TAC-ATCCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
196 CACGAT-CATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * *
18065972 TCGAGGTTTGTGGCAGC-AG--GAC--C-GAT---AGCATGCAGAGGGGGACCGGGCTGATCCCC
260 CCGAGGGTTGTGGCAGCAAGACGACAGCGGATCACAGCATGCAGAGGGGGACCGGGCTGATCCTC
* *
18066028 GGCTTGGGCATTATGCCTCTTCG----GTCGGC---
325 GGCTTGCGCATTATGCCTCTTCGCCTCTTCGGCGGT
* * * * * * *
18066057 TCAGCGCTCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* * * * *
18066122 TATAGAGTCCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTGTGGCAGCAGGATCGACAGCA
66 TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
** * * * * *
18066187 CACAGGGGGGGATCGAGCC-GATCCTCGGCTTGTGCATTCTGCCACTTCGA-CTGGCTGAGCACC
131 TGCA-GGGGGGATCGAGCCAGATCCCCGGCTTGCGCATTCTACCTCTCCGACCT-GCTGAGCACC
* * *
18066250 CGCATGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCA
194 CGCACGATCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCA
18066297 CATCCAAGCA
Statistics
Matches: 798, Mismatches: 131, Indels: 67
0.80 0.13 0.07
Matches are distributed among these distances:
343 114 0.14
344 79 0.10
345 4 0.01
346 1 0.00
347 4 0.01
356 45 0.06
360 3 0.00
362 1 0.00
363 3 0.00
364 3 0.00
366 4 0.01
367 158 0.20
368 378 0.47
369 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (360 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
TGCAGGGGGGATCGAGCCAGATCCCCGGCTTGCGCATTCTACCTCTCCGACCTGCTGAGCACCCG
CACGATCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
CGAGGGTTGTGGCAGCAAGACGACAGCGGATCACAGCATGCAGAGGGGGACCGGGCTGATCCTCG
GCTTGCGCATTATGCCTCTTCGCCTCTTCGGCGGT
Found at i:18065786 original size:26 final size:26
Alignment explanation
Indices: 18065750--18065802 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18065740 GTTGACTTAG
*
18065750 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18065776 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18065802 G
1 G
18065803 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Done.