Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 160 of 402
Found at i:18066308 original size:185 final size:185
Alignment explanation
Indices: 18065979--18066332 Score: 435
Period size: 185 Copynumber: 1.9 Consensus size: 185
18065969 AGATCGAGGT
* ** * *
18065979 TTGTGGCAGCAGGACCGATAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTTGGGCATTATGC
1 TTGTGGCAGCAGGACCGACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGGGCATTATGC
* * * * * **
18066044 CTCTTCGGTCGGCTCAGCGCTCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATC
66 CACTTCGCTCGGCTCAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACAAAGCTCATC
* *
18066109 CCCAGTCTAAGCATATAG-AGTCCATTCCCAGTCTAAGATCGGACCGGACCGAGAG
131 CACAGTCCAAGCATA-AGAAGTCCATTCCCAGTCTAAGATCGGACCGGACCGAGAG
* * * * * *
18066164 TTGTGGCAGCAGGATCGACAGCACACAGGGGGGGATCGAGCCGATCCTCGGCTTGTGCATTCTGC
1 TTGTGGCAGCAGGACCGACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGGGCATTATGC
* *
18066229 CACTTCGACT-GGCTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCAT
66 CACTTCG-CTCGGCTCAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACAAAGCTCA-
* * *
18066293 TCCACA-TCCAAGCATACGAAGTTCATTCCTAGTCTAAGAT
129 TCCACAGTCCAAGCATAAGAAGTCCATTCCCAGTCTAAGAT
18066333 TTTGAGCCAC
Statistics
Matches: 141, Mismatches: 25, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
184 1 0.01
185 134 0.95
186 6 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
TTGTGGCAGCAGGACCGACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGGGCATTATGC
CACTTCGCTCGGCTCAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACAAAGCTCATC
CACAGTCCAAGCATAAGAAGTCCATTCCCAGTCTAAGATCGGACCGGACCGAGAG
Found at i:18067256 original size:159 final size:159
Alignment explanation
Indices: 18067024--18067458 Score: 459
Period size: 159 Copynumber: 2.7 Consensus size: 159
18067014 TCGATAGCTT
* * * * * * *
18067024 GTAGGGGGGACC-GGGCCGATCCACGACTTGAGCATTCTGCCTCTCCGA-CAGGCTGAGCGCCCG
1 GTAGTGGGGACCTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATC-GGCTCAGCGCCCG
* * **
18067087 TACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTCG-A
65 TACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACT-GAA
* *
18067151 CCGATGATTGTGGTAGCAGGACCGGCAGCAC
129 CCGAGGATTGTGGTAGCAGGACCGACAGCAC
* * ** * * *
18067182 GTAAAG-GGGGATC-GGGTTGATCCCCGGTTTGCGCATTATGCCTCTCTGATCGGCTCTGCGCCC
1 GT--AGTGGGGACCTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCC
* * * * ** *
18067245 GTACGTTTGTTTCATGGGTTGACTTAGGGATACGGAGTTCAATCTCA-GTCTAAGATCGAACTGA
64 GTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAACTGA
* *
18067309 ACCGAGGGTTGTGGTAGCAGGATCGACAGCAC
128 ACCGAGGATTGTGGTAGCAGGACCGACAGCAC
* * * * * *
18067341 GTAGTGGGGCCCTGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
1 GTAGTGGGGACCTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGT
*
18067406 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 ACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18067459 ATACGGTGTT
Statistics
Matches: 224, Mismatches: 45, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 10 0.04
159 207 0.92
160 5 0.02
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
GTAGTGGGGACCTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGT
ACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTGAACC
GAGGATTGTGGTAGCAGGACCGACAGCAC
Found at i:18067461 original size:26 final size:26
Alignment explanation
Indices: 18067431--18067483 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18067421 GTTGGCTTAG
18067431 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18067457 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18067483 G
1 G
18067484 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18067666 original size:26 final size:26
Alignment explanation
Indices: 18067630--18067679 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18067620 GACTTGGGCA
18067630 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
* *
18067656 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
18067680 ACCGGATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:18068375 original size:26 final size:26
Alignment explanation
Indices: 18068336--18068388 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18068326 GTTGACTTAG
* *
18068336 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAATTCATTCCC-AGTCTAA
18068362 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
18068388 G
1 G
18068389 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:18068693 original size:159 final size:159
Alignment explanation
Indices: 18068362--18068865 Score: 409
Period size: 159 Copynumber: 3.2 Consensus size: 159
18068352 CCTAGTCTAA
* * * * * * * * * *
18068362 GCATACAGAATTCATTCCCA-GTCTAAG-ATCAAACCGGATCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGACGGTTGTGGCAGCAAGACCGA
* * ** * * * **
18068425 CAGCACGCAAGGGG-G-ACC-AGGCCGAT-CCCGACTTACGCGTTCTGCCTCTCCGACCGGCCGA
65 CAACACGC-AGGGGTGAACCGA-GCCGATCCCCAACTTACGTATTATGCCTCTCCGGCCAGCTAA
* * *
18068486 GCACCCGCACGTCTGTTTCGTGGTTTGGCTTAG
128 GCGCCCGTACGTTTGTTTCGTGG-TTGGCTTAG
* **
18068519 GCATAGGGAGTTCATTCCATGTCTAAGCACCAG-CCAGACCGACGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGACGGTTGTGGCAGCAAGACCGAC
* * * * * * *
18068583 AACATGTAGAGGG-GAACCGGGCCGATCCCCAGCTTGCGTATTATGCCTTTCTGGCCAGCTCAA-
66 AACACGCAG-GGGTGAACCGAGCCGATCCCCAACTTACGTATTATGCCTCTCCGGCCAGCT-AAG
*
18068646 CGCCCGTACGTTTGTTTCGTGTGTTGACTTAG
129 CGCCCGTACGTTTGTTTCGTG-GTTGGCTTAG
* * * * * *
18068678 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCGAGGGTTGTGGCAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGACGGTTGTGGCAGCAAGACCGA
* * * * *
18068741 CAGCACGCAGGGGTGGACCGAGCTGATCCCCAACTTACGTATTCTGCCTCTCCGGTCAGCTAAGC
65 CAACACGCAGGGGTGAACCGAGCCGATCCCCAACTTACGTATTATGCCTCTCCGGCCAGCTAAGC
* * ** *
18068806 GCCCGTATGCTCATTTCATGGGTTGGCTTAG
130 GCCCGTACGTTTGTTTCGT-GGTTGGCTTAG
18068837 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
18068866 TACGAAGTTC
Statistics
Matches: 274, Mismatches: 58, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 5 0.02
157 53 0.19
158 23 0.08
159 186 0.68
160 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGACGGTTGTGGCAGCAAGACCGAC
AACACGCAGGGGTGAACCGAGCCGATCCCCAACTTACGTATTATGCCTCTCCGGCCAGCTAAGCG
CCCGTACGTTTGTTTCGTGGTTGGCTTAG
Found at i:18068867 original size:26 final size:26
Alignment explanation
Indices: 18068837--18068889 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18068827 GTTGGCTTAG
*
18068837 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
18068863 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18068889 G
1 G
18068890 ATAAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18069246 original size:26 final size:26
Alignment explanation
Indices: 18069217--18069269 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18069207 GTTGACTTAG
18069217 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
* *
18069243 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
18069269 G
1 G
18069270 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:18069535 original size:158 final size:158
Alignment explanation
Indices: 18069243--18069585 Score: 426
Period size: 158 Copynumber: 2.2 Consensus size: 158
18069233 CCTAGTCTAA
* ** **
18069243 GCATACGGAGTTCATTCCTA-GTCTAAGATCGGACCGGTCTGAGGGTTGCGGCAGTAGGAACGAC
1 GCATACGGAGTTCATT-CTATGTCTAAGACCCAACCGAACTGAGGGTTGCGGCAGTAGGAACGAC
* *
18069307 AGCACGCAAAGGGGATCGGGCGAATCCTCAGCTTGCGCATTCTGCCTCTCTGATCGACTGAGCGC
65 AGCACGCAAAGGGGACCGGGCGAATCCTCAGCTTGCGCATTATGCCTCTCTGATCGACTGAGCGC
18069372 TCGCACGCCCGTTTCATGGGTTGGCTTAG
130 TCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * * *
18069401 GCATAGGGAGTTCATTCTATGTCTAAGACCCAACCGAACTGAGGGTTGTGGCTGTGGGACCGACA
1 GCATACGGAGTTCATTCTATGTCTAAGACCCAACCGAACTGAGGGTTGCGGCAGTAGGAACGACA
* * ** *
18069466 GCATGTAGGGGGGACCGGGTCG-ATCC-CAGGCTTGCGCATTATGCCTCTCTGGTC-AGCTGAGC
66 GCACGCAAAGGGGACCGGG-CGAATCCTCA-GCTTGCGCATTATGCCTCTCTGATCGA-CTGAGC
* *
18069528 GGC-CGCACGCTCGTTTTATGGGTTGGCTTAG
128 -GCTCGCACGCCCGTTTCATGGGTTGGCTTAG
*
18069559 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCTATGTCTAAG
18069586 CATATGGAGT
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
157 6 0.04
158 149 0.94
159 4 0.03
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCTATGTCTAAGACCCAACCGAACTGAGGGTTGCGGCAGTAGGAACGACA
GCACGCAAAGGGGACCGGGCGAATCCTCAGCTTGCGCATTATGCCTCTCTGATCGACTGAGCGCT
CGCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:18069595 original size:26 final size:26
Alignment explanation
Indices: 18069559--18069611 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18069549 GTTGGCTTAG
18069559 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18069585 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18069611 G
1 G
18069612 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18069865 original size:354 final size:343
Alignment explanation
Indices: 18069167--18069930 Score: 831
Period size: 354 Copynumber: 2.2 Consensus size: 343
18069157 CTCCAACCGA
* * * * *
18069167 CCTCTCTGGCCGGTTGAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCA-
1 CCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
18069231 TCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGTCTGAGGGTTGCGGCA
66 TCCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACA
* * * * *
18069296 GTAGGAACGACAGCACGCAAAGGGGATCGGGCGAATCCTCAGCTTGCGCATTCTGCCTCTCTGAT
131 GCAGGAACAACAGCACGCAAAGGGGACCGGGCGAATCCTCAGCTTGCGCATTCTGCCTCTCCGAC
* * *
18069361 CGACTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTA
196 CGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTA
** *** * * ** *
18069426 AGACCCAACCGAACTGAGGGTTGTGGCTGTGGGACCGACAGCATGTAGGGGGGACCGGGTCGATC
261 AGACCCAACCGAACCAAGGGTTGTGGCAACGGGACCGACAGCACGCAGAAGGGACCGAGTCGATC
18069491 CCAGGCTTGCGCATTATG
326 CCAGGCTTGCGCATTATG
* * * *
18069509 CCTCTCTGGTCAGCTGAGCGGCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
*
18069574 TCCAT-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAC-GAGGGTTGCGAC
66 TCCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG-ACTGAGGGTTGCGAC
* * *
18069637 AGCAGGACCAACAGCAGGATCGGTCACACGCAGGGGGGACCGAGGCG-ATCCTCGGCTTGTGCAT
130 AGCAGGAACAACAGC---A-C-G-CA-A---A--GGGGACCG-GGCGAATCCTCAGCTTGCGCAT
* * * ** *
18069701 TCTGCCTCTCCGCCCGGCTGAGTGCCCGCACGTTCGTTTCATGGGTTGCCTTAGGCGTAGGGAGT
182 TCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGCCTTAGGCATAGGGAGT
* ** * *
18069766 TCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAAA
247 TCATTCCATGTCTAAGACCCAACCGAACCAAGGGTTGTGGCAACGGGACCGACAGCACGCAG-AA
18069831 GGGACCGAGTCGATCCTC-GGCTTGCGCA-TATG
311 GGGACCGAGTCGATCC-CAGGCTTGCGCATTATG
* * * * * * * *
18069863 CCTCT-TCGATCGGCTCAGTGCCCGCATGCTCGTTTCGTGGGTTTACTTAGACACACGGAGTTCA
1 CCTCTCT-GGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
18069927 TTCC
65 TTCC
18069931 CAATCTAAGA
Statistics
Matches: 345, Mismatches: 59, Indels: 24
0.81 0.14 0.06
Matches are distributed among these distances:
342 118 0.34
343 5 0.01
345 1 0.00
346 1 0.00
347 1 0.00
348 2 0.01
349 1 0.00
352 1 0.00
353 1 0.00
354 184 0.53
355 29 0.08
356 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
CCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACA
GCAGGAACAACAGCACGCAAAGGGGACCGGGCGAATCCTCAGCTTGCGCATTCTGCCTCTCCGAC
CGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGACCCAACCGAACCAAGGGTTGTGGCAACGGGACCGACAGCACGCAGAAGGGACCGAGTCGATC
CCAGGCTTGCGCATTATG
Found at i:18069980 original size:158 final size:158
Alignment explanation
Indices: 18069663--18070098 Score: 384
Period size: 158 Copynumber: 2.8 Consensus size: 158
18069653 GGATCGGTCA
** * * * ** *
18069663 CACGCAGGGGGGACCGAGGCGATCCTCGGCTTGTGCATTCTGCCTCTCCGCCCGGCTGAGTGCCC
1 CACGCAGAAGGGACCGAGGCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCCC
* * * ** * * *
18069728 GCACGTTCGTTTCATGGGTTGCCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
66 GCACGCTCGTTTCATGGGTTGACTTAGACACACGGAGTTCATTCCATATCTAAGCACCAGTCGGA
*
18069793 CCAAGGGTTGTGGCAACGGGACCGGCAG
131 CCAAGGGTTGTGGCAACGGGACCGACAG
*
18069821 CACGCAGAAAGGGACCGAGTCGATCCTCGGCTTGCGCA-TATGCCTCTTCGATCGGCTCAGTGCC
1 CACGCAG-AAGGGACCGAGGCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCC
* * * *
18069885 CGCATGCTCGTTTCGTGGGTTTACTTAGACACACGGAGTTCATTCCCA-ATCTAAG-ATCAGATC
65 CGCACGCTCGTTTCATGGGTTGACTTAGACACACGGAGTTCATT-CCATATCTAAGCACCAG-TC
* *
18069948 GGACCGAGGGTTGTGGCAGTA-GGG-TCGACAG
128 GGACCAAGGGTTGTGGCA--ACGGGACCGACAG
* * * * * * * * *
18069979 CACGTAGGAGGGACTG-GGCTGATGCTCGACTTACGCATTTTGCCTCTTCGATCGGCTAAGCGCC
1 CACGCAGAAGGGACCGAGGC-GATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCC
* * * * ** * *
18070043 CACACGCTCATTTCCT-GGTT-AGCTTAGGCGTATGGAGTTCATTCCATGTCTAAGCA
65 CGCACGCTCGTTTCATGGGTTGA-CTTAGACACACGGAGTTCATTCCATATCTAAGCA
18070099 TACGGAGTTC
Statistics
Matches: 225, Mismatches: 43, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
156 6 0.03
157 51 0.23
158 135 0.60
159 32 0.14
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CACGCAGAAGGGACCGAGGCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCCC
GCACGCTCGTTTCATGGGTTGACTTAGACACACGGAGTTCATTCCATATCTAAGCACCAGTCGGA
CCAAGGGTTGTGGCAACGGGACCGACAG
Found at i:18070295 original size:26 final size:26
Alignment explanation
Indices: 18070266--18070318 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18070256 GTTTGCTTAG
18070266 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18070292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18070318 G
1 G
18070319 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18071015 original size:26 final size:26
Alignment explanation
Indices: 18070978--18071030 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18070968 GTTGACTTAG
18070978 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
18071004 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
18071030 G
1 G
18071031 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:18071516 original size:159 final size:158
Alignment explanation
Indices: 18071004--18071835 Score: 528
Period size: 159 Copynumber: 5.2 Consensus size: 158
18070994 CCCAATCTAA
* * * * * * * *
18071004 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGATTGAGGGTTACCACAGTAGGATCGAT
1 GCATAGGGAGTTCATT-CCATGTCTAAGATTGGACCAGATTGAGGGTTGCGACAGCAGGATCGAC
*** ** * *
18071068 AGCACGCAGGGGGGACCGAATCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
18071133 CTGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * * **
18071162 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGTAGCAAGACCGACA
1 GCATAGGGAGTTCATTCCATGTCTAAG----A-TTGGACC-A-GATTGAGG--G-TTG--CGACA
* * * * * *
18071227 GCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGAT-GCTCGGCTTGCGGATTATGCCTCTCCG
54 GCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCG
* * * * * * * *
18071291 ATCAGCTGAGCACTCGTACGCTCGTTTCGTGGGTTGACTTAG
117 ACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * *
18071333 GCATACGGAGTTTATTAC-TAGTCTAAGATTGGACCAGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATAGGGAGTTCATTCCAT-GTCTAAGATTGGACCAGATTGAGGGTTGCGACAGCAGGATCGAC
* * *
18071397 AGCACGCAGGGGCGCACCGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGACCGGTTGAGCG
65 AGCACGCAGGGG-GGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* **
18071462 CCCGCATGCCCGTTTCATGGACTGGCTTAG
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * **** * * ** * * * *
18071492 GGATAGGGTGTTCATTCCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTTG-CAGCGGGACCGG
1 GCATAGGGAGTTCATTCCATGTCTAAGATTGGA-CCAGATTGAGGGTTG-CGACAGCAGGATCGA
* * * * * * * * ** * *
18071555 TAGCATGCTGAGGGGGATCGGGTCGAT-CGTCGGCTTGCACATTATGCCTCTCCGGTCTGCTCAG
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * * * *
18071619 TGCCCGCATGCTCATTTCATGGGTTGACTTAG
127 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
** * * * * **
18071651 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAACC-GAACTGATGGTTGCGGTAGCAGGATCGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGATTGGACCAG-ATTGAGGGTTGCGACAGCAGGATCGA
* * * * ** * *
18071714 TAGCATGCAGGGGGGACTGGGCCGATCCCTGACTTATGCATTCTGCCTCTCCGATCGGGTGAGCG
64 CAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
18071779 CCCACACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
* *
18071809 GCATACGGAGTTAATTCCATGTCTAAG
1 GCATAGGGAGTTCATTCCATGTCTAAG
18071836 CATACGAAGT
Statistics
Matches: 507, Mismatches: 138, Indels: 58
0.72 0.20 0.08
Matches are distributed among these distances:
157 6 0.01
158 115 0.23
159 242 0.48
160 12 0.02
161 1 0.00
162 2 0.00
163 3 0.01
164 5 0.01
165 7 0.01
166 5 0.01
167 2 0.00
170 22 0.04
171 85 0.17
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCATGTCTAAGATTGGACCAGATTGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:18071712 original size:318 final size:320
Alignment explanation
Indices: 18071004--18071836 Score: 942
Period size: 318 Copynumber: 2.6 Consensus size: 320
18070994 CCCAATCTAA
* * * * * *
18071004 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTACCACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGACAGCAGGATCGATA
*** ** *
18071069 GCACGCAGGGGGGACCGAATCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
18071134 TGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG
*
18071199 ACCGAGGGTTGTGGTAGCAAGACCGACAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGAT
196 ACCGAGGGTTGT-GT------A--GACAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCTGAT
** * * * * *
18071264 GCTCGGCTTGCGGATTATGCCTCTCCGATCAGCTGAGCACTCGTACGCTCGTTTCGTGGGTTGAC
252 GCTCGGCTTGCACATTATGCCTCTCCGATCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGAC
18071329 TTAG
317 TTAG
* * * * * *
18071333 GCATACGGAGTTTATTACTAGTCTAAGATTGGACCAGATC-GAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTGCGACAGCAGGATCGAT
* * * *
18071397 AGCACGCAGGGGCGCACCGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGACCGGTTGAGCG
65 AGCACGCAGGGG-GGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCG
* ** * *
18071462 CCCGCATGCCCGTTTCATGGACTGGCTTAGGGATAGGGTGTTCATTCCATGTCTAAGCCCCAG-T
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
* * * * *
18071526 CGGACCGAGGGTTGT-T-G-CAGCGGGACCGGTAGCATGCTGAGGGGGATCGGG-TCGAT-CGTC
194 -AGACCGAGGGTTGTGTAGACAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCT-GATGC-TC
* * ** *
18071586 GGCTTGCACATTATGCCTCTCCGGTCTGCTCAGTGCCCGCATGCTCATTTCATGGGTTGACTTAG
256 GGCTTGCACATTATGCCTCTCCGATCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* * * **
18071651 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGATGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGACAGCAGGATCGATA
* * * * * *
18071716 GCATGCAGGGGGGACTGGGCCGATCCCTGACTTATGCATTCTGCCTCTCCGATCGGGTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * * *
18071781 CACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGC
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18071837 ATACGAAGTT
Statistics
Matches: 423, Mismatches: 75, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
317 98 0.23
318 147 0.35
319 1 0.00
328 1 0.00
329 63 0.15
330 113 0.27
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (320 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGACAGCAGGATCGATA
GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG
ACCGAGGGTTGTGTAGACAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCTGATGCTCGGCTT
GCACATTATGCCTCTCCGATCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:18072205 original size:26 final size:26
Alignment explanation
Indices: 18072176--18072228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18072166 GTTGACTTAG
*
18072176 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATAAAGAGTTCATTCCC-AGTCTAA
18072202 GCATAAAGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
18072228 G
1 G
18072229 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTCTAA
Found at i:18072542 original size:342 final size:343
Alignment explanation
Indices: 18072163--18072888 Score: 931
Period size: 342 Copynumber: 2.1 Consensus size: 343
18072153 GCTTGTTTTG
*
18072163 TGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATAAAGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGAATAAAGAGTTCATTCCCAGTCTAA
* *** * * *
18072228 GATCGGACTAGACCGAGGGTTTTGGCAGCAAGATCGGCAACACGCAGGGGGGATCGGGCATATCT
66 GATCAGACTAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGGGCAGATC-
** ** * * *
18072293 TTC-ACTTTCGCATTCTGCCTCTTT-GGCTGACT-GATCGCCCGCATGCCCGTTTCGTCGGTTGG
130 CCCGACTTGAGCATTCTACCT-TTTCGACTGACTCGA-CGCCCGCACGCCCGTTTCGTCGGTTGG
* * **
18072355 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTAAGGGTTGT-GCAGTGGGAC
193 CTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAACCGGACCAAGGGTTGTGGCAACGGGAC
* **
18072419 CGGCAGCATGAAGAGAGGGATCGGGTCGATCCCCGACTTGCGCATCATGCCCCTTCGGGCGGCTC
258 CGGCAGCACGAAGAGAGGGATCGGGTCGATCCCCGACTTGCGCATCATGCCCCTTCGACCGGCTC
** *
18072484 AGTGCCCGCATGCTCATTTCA
323 AGCACCCGCACGCTCATTTCA
**
18072505 TGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGAATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGAATAAAGAGTTCATTCCCAGTCTAA
* * * * * *
18072570 GATCAGACTGGACCGAGGGTGGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCC
66 GATCAGACTAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGGGCAGATCC
* * * *
18072635 CCGACTTGAGCATTTTACCTTTTCGACTGACTCGACGCCCGTACGCCCGTTTCGTGGGTTGGTTT
131 CCGACTTGAGCATTCTACCTTTTCGACTGACTCGACGCCCGCACGCCCGTTTCGTCGGTTGGCTT
* ** * *
18072700 AGGCGTAGGGAGTTCATTCCATGTATAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACTGG
196 AGGCATAGGGAGTTCATTCCATGTATAAGCCCCAACCGGACCAAGGGTTGTGGCAACGGGACCGG
* * * * * *
18072765 CAGCACGCATAGGGGGATTGGGTCGATCCCCGACTTTCGCATCATGCCTCTTCGACCGGCTCAGC
261 CAGCACGAAGAGAGGGATCGGGTCGATCCCCGACTTGCGCATCATGCCCCTTCGACCGGCTCAGC
*
18072830 ACCCGCACGCTTATTTCA
326 ACCCGCACGCTCATTTCA
*
18072848 TGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGA
1 TGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGA
18072889 TCAGACCGGA
Statistics
Matches: 329, Mismatches: 50, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
341 4 0.01
342 204 0.62
343 117 0.36
344 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (343 bp):
TGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGAATAAAGAGTTCATTCCCAGTCTAA
GATCAGACTAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGGGCAGATCC
CCGACTTGAGCATTCTACCTTTTCGACTGACTCGACGCCCGCACGCCCGTTTCGTCGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTATAAGCCCCAACCGGACCAAGGGTTGTGGCAACGGGACCGG
CAGCACGAAGAGAGGGATCGGGTCGATCCCCGACTTGCGCATCATGCCCCTTCGACCGGCTCAGC
ACCCGCACGCTCATTTCA
Found at i:18072554 original size:26 final size:26
Alignment explanation
Indices: 18072520--18072571 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18072510 TGACTTAGGC
18072520 ATACAGAGTTCA-TCCCTAGTCTAAGA
1 ATACAGAGTTCATTCCC-AGTCTAAGA
*
18072546 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
18072572 TCAGACTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:18072906 original size:159 final size:157
Alignment explanation
Indices: 18072546--18073046 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 157
18072536 TAGTCTAAGA
* * * *
18072546 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTGGCGGTAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
* * * * * * *
18072611 ATGCAGGGGGGACCGGGCCGATCCCCGACTTGA-GCATTTTACCTTTTCGACTGACTC-GACGCC
66 ACGCAGGGGGGACTGGGCCGATCCCCGACTT-ACGCA-TCTGCCTCTTCGACCGGCTCAG-CGCC
* * * *
18072674 CGTACGCCCGTTTCGTGGGTTGGTTTAGGC
128 CGCACGCTCATTTCGTGGGTTGGCTTAGGC
* * * ** * * * *
18072704 GTAGGGAGTTCATT-CCATGTATAAGCCCCAG-TCGGACCGAGGGTTGTGGCAACGGGA-CTGGC
1 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC-GAC
* * * * *
18072766 AGCACGCATAGGGGGATTGGGTCGATCCCCGACTTTCGCATCATGCCTCTTCGACCGGCTCAGCA
63 AGCACGCA-GGGGGGACTGGGCCGATCCCCGACTTACGCATC-TGCCTCTTCGACCGGCTCAGCG
* * *
18072831 CCCGCACGCTTATTTCATGGGTTGACTTAGGC
126 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* *
18072863 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-TCGACAGCAGGATCGATAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGT-GGCAGCAGGATCGACAG
* * * * *
18072927 CACGCAGGGGGGGACTGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCC
65 CACGCA-GGGGGGACTGGGCCGATCCCCGACTTACGCA-TCTGCCTCTTCGACCGGCTCAGCGCC
* *
18072992 CGCACTCTCATTTCGTGGGTGGGCTTAGGC
128 CGCACGCTCATTTCGTGGGTTGGCTTAGGC
*
18073022 ATACGGAGTTCATTCCCTGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
18073047 CATACGGAGT
Statistics
Matches: 271, Mismatches: 60, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 51 0.19
159 209 0.77
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGCAGGGGGGACTGGGCCGATCCCCGACTTACGCATCTGCCTCTTCGACCGGCTCAGCGCCCGC
ACGCTCATTTCGTGGGTTGGCTTAGGC
Found at i:18073056 original size:26 final size:26
Alignment explanation
Indices: 18073020--18073072 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18073010 GTGGGCTTAG
*
18073020 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18073046 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18073072 G
1 G
18073073 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18073229 original size:514 final size:501
Alignment explanation
Indices: 18072478--18073560 Score: 1765
Period size: 514 Copynumber: 2.1 Consensus size: 501
18072468 CCCCTTCGGG
* *
18072478 CGGCTCAGTGCCCGCA-TGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTC
1 CGGCTGAGTGCCCGCACT-CTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCT-GTC
* * * * * * *
18072541 TAAGAATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTGGCGGTAGCAGGATCG
64 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTGACGATAACAGGACCG
* * *
18072606 ACAGCATGCAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTTTACCTTTTCGACTGACTCGAC
129 ACAGCATGCAGGGGGGACCGGACCGATCCCCGACTTGAGCATTTTACCTCTCCGACTGACTCGAC
*
18072671 GCCCGTACGCCCGTTTCGTGGGTTGGTTTAGGCGTAGGGAGTTCATTCCATGTATAAGCCCCAGT
194 GCCCGCACGCCCGTTTCGTGGGTTGGTTTAGGCGTAGGGAGTTCATTCCATGTATAAGCCCCAGT
*
18072736 CGGACCGAGGGTTGTGGCAACGGGACTGGCAGCACGCATAGGGGGATTGGGTCGATCCCCGACTT
259 CGGACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCATAGGGGGATTGGGTCGATCCCCGACTT
18072801 TCGCATCATGCCTCTTCGACCGGCTCAGCACCCGCACGCTTATTTCATGGGTTGACTTAGGCATA
324 TCGCATCATGCCTCTTCGACCGGCTCAGCACCCGCACGCTTATTTCATGGGTTGACTTAGGCATA
18072866 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGACAGCAGGATCGATAGCACG
389 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGACAGCAGGATCGATAGCACG
18072931 CAGGGGGGGACTGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGAC
454 CA-GGGGGGACTGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGAC
* * *
18072980 CGGCTGAGTGCCCGCACTCTCATTTCGTGGGTGGGCTTAGGCATACGGAGTTCATTCCCTGTCTA
1 CGGCTGAGTGCCCGCACTCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTA
*
18073045 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGATAACAGGACCAGC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTGACGATAACAGGACC-G-
18073110 AGCAGGATTGGCGAAATGCAGGGGGGACCGGACCGATCCCCGACTTGAGCATTTTACCTCTCCGA
129 A-C---A---GC---ATGCAGGGGGGACCGGACCGATCCCCGACTTGAGCATTTTACCTCTCCGA
*
18073175 CTGACTCGACGCCCGCACGCCCGTTTCGTGGGTTGGTTTAGGCGTAGGGAGTTCATTCCATGTCT
184 CTGACTCGACGCCCGCACGCCCGTTTCGTGGGTTGGTTTAGGCGTAGGGAGTTCATTCCATGTAT
18073240 AAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCATAGGGGGATTGGGTCGA
249 AAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCATAGGGGGATTGGGTCGA
* *
18073305 TCCCTGACTTTCGCATCATGCCTCTTCGACCGGCTCAGCACCCGCACGCTTGTTTCATGGGTTGA
314 TCCCCGACTTTCGCATCATGCCTCTTCGACCGGCTCAGCACCCGCACGCTTATTTCATGGGTTGA
*
18073370 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTTGACAGCAGGAT
379 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGACAGCAGGAT
* *
18073435 CGATAGCACGCAGGGGGGACTGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGAC
444 CGATAGCACGCAGGGGGGACTGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGAC
* * * *
18073493 CGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
1 CGGCTGAGTGCCCGCACTCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTA
18073558 AGC
66 AGC
18073561 CCCAGTCGGA
Statistics
Matches: 536, Mismatches: 31, Indels: 17
0.92 0.05 0.03
Matches are distributed among these distances:
502 106 0.20
503 7 0.01
504 1 0.00
505 1 0.00
508 1 0.00
511 2 0.00
513 105 0.20
514 313 0.58
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (501 bp):
CGGCTGAGTGCCCGCACTCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTGACGATAACAGGACCGAC
AGCATGCAGGGGGGACCGGACCGATCCCCGACTTGAGCATTTTACCTCTCCGACTGACTCGACGC
CCGCACGCCCGTTTCGTGGGTTGGTTTAGGCGTAGGGAGTTCATTCCATGTATAAGCCCCAGTCG
GACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCATAGGGGGATTGGGTCGATCCCCGACTTTC
GCATCATGCCTCTTCGACCGGCTCAGCACCCGCACGCTTATTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGACAGCAGGATCGATAGCACGCA
GGGGGGACTGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGAC
Found at i:18073588 original size:158 final size:158
Alignment explanation
Indices: 18073127--18073589 Score: 504
Period size: 159 Copynumber: 2.9 Consensus size: 158
18073117 TTGGCGAAAT
* * * * * * *
18073127 GCAGGGGGGACCGGACCGATCCCCGACTTGAGCATTTTACCTCTCCGACTGACTCGA-CGCCCGC
1 GCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGACT-GAGCGCCCGC
* * * * *
18073191 ACGCCCGTTTCGTGGGTTGGTTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
65 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
* * *
18073256 GAGGGTTGTGGCAACGGGACCGGCAGCAC
130 GAGGGTTGTGGCAGCAGGACCGACAGCAC
* * * * * * * *
18073285 GCATAGGGGGATTGGGTCGATCCCTGACTTTCGCA-TCATGCCTCT-TCGACCGGCTCAGCACCC
1 GCA-GGGGGGACTGGGCCGATCCCCGACTTGCGCATTC-TGCCTCTCT-GACCGACTGAGCGCCC
* * ** *
18073348 GCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCG
63 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCG
* * * *
18073411 GACCGAGGGTTTTGACAGCAGGATCGATAGCAC
126 GACCGAGGGTTGTGGCAGCAGGACCGACAGCAC
* *
18073444 GCAGGGGGGACTGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCA
1 GCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCA
* * *
18073509 CGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTG
66 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCG
18073574 AGGGTTGTGGCAGCAG
131 AGGGTTGTGGCAGCAG
18073590 AACCAGCAGC
Statistics
Matches: 243, Mismatches: 52, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 118 0.49
159 119 0.49
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCA
CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCG
AGGGTTGTGGCAGCAGGACCGACAGCAC
Found at i:18073753 original size:26 final size:26
Alignment explanation
Indices: 18073716--18073768 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18073706 GTTGACTTAG
18073716 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18073742 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
18073768 G
1 G
18073769 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18074628 original size:26 final size:26
Alignment explanation
Indices: 18074598--18074650 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18074588 CTTGGCTTAG
18074598 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18074624 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18074650 G
1 G
18074651 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18074899 original size:381 final size:369
Alignment explanation
Indices: 18074179--18075387 Score: 1063
Period size: 381 Copynumber: 3.3 Consensus size: 369
18074169 TCTTCGACCT
* * * * * * *
18074179 GCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCATAGGCATACGAAATTCAT-TCCATGTCTAA
1 GCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
* * * ** *
18074243 GCATACAGAGTTCATTCCCAGTATAAGATTGGACCAAACCGAGGGTTACGGTAGCAGGACCAGTA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GTAGCAGGACCAGTA
* * * * * * * * *
18074308 GCAGGATCGACAGCACGCAGGAGGGGACTGAGCTGATCCCTGGCTTGCGCATTCTGCTTCTACGA
129 GCAGGATCGACAGCATGCA-GAGGGGACCGGGCCGATCCCAGGCTTGCACATTCTGCCTCTCCGG
* ** * *
18074373 CCGACTGAGCACCCGTAAGCTCGTTTCGTGGGTT-AGCTTAGGCATACGGAGTTCATTACATGTC
193 CCGGCT-AG-TGCCG-ACGCTC-TTTC-TGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTC
* * * ** * * *
18074437 TAACCCCCAGCCGGATCAAGGTTTGTGGTAGGAGGATCGACAGCTGGATTGGCAGTACGCAAAGA
252 TAAGCCCCAGCCGGATCGAGGGTTGTGGT-GGAGGA-CGACAGC-GGATTAACAGCACGCAGAGG
*
18074502 GGGATTGGGCTGATCCCAAGCTTACGTGTTATGCCTCTTCGGTCGGCCTCTCCAGCCG
314 GGGATCGGGCTGATCCC-AGCTTACGTGTTATGCCTCTTCGG-CGGCCTCTCCAGCCG
* * *
18074560 GCTGAACGCCCGCACGCTCGTTTCATGGCTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
1 GCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
18074624 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGACCAGTA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-TAGCAGGACCAGTA
*
18074689 GCAGGATCGACAGCATGCAGAGGGGAACCGGGCCGATCCTC-GGCTTGCTCATTCTGCCTCTCCG
129 GCAGGATCGACAGCATGCAGAGGGG-ACCGGGCCGATCC-CAGGCTTGCACATTCTGCCTCTCCG
* *
18074753 GCCGGCTAAGTGCTCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTTGTC
192 GCCGGCT-AGTGC-CG-ACGCTC-TTTC-TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTC
* *
18074818 TAAGCCCCAGCCGGATCGAGGGCTGTGGTGGCAGGACAGCCAGCGAGATTAACAGCACGCAGAGG
252 TAAGCCCCAGCCGGATCGAGGGTTGTGGTGG-AGGAC-GACAGCG-GATTAACAGCACGCAGAGG
* * * * * *
18074883 GGGACCGGGTTGATCCC--C-GAC----T-TGCGC-ATT--AC-GCCTCTCCGGCCG
314 GGGATCGGGCTGATCCCAGCTTACGTGTTATGC-CTCTTCGGCGGCCTCTCCAGCCG
* * * * *
18074928 GTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * *
18074993 CATATGGAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGGGTT--GT-----G----GTAGC
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGTAGCAGGACCAGTAGC
* * * * *
18075047 AAGATCAACAGCATGCAGGGGGGACCGGG-CGATCCCAGGCTTGCACATTCTACCTCTCTGGCCG
131 AGGATCGACAGCATGCAGAGGGGACCGGGCCGATCCCAGGCTTGCACATTCTGCCTCTCCGGCCG
*
18075111 GC---TG-AG-CGC-C---C------G-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
196 GCTAGTGCCGACGCTCTTTCTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* * * * ** * *
18075160 GTCGGATCGAGGGTTGTGGCAGTAAGACCGGTAGCGGGATCAACAGCACGTAGAGGGGGATCGGG
261 GCCGGATCGAGGGTTGTGG-TGGAGGA-CGACAGC-GGATTAACAGCACGCAGAGGGGGATCGGG
*
18075225 CTGATCCCGAGCTT--GTGCATTATGCCTC-TCTGGCTGGCCTCTCCTGCCG
323 CTGATCCC-AGCTTACGTG--TTATGCCTCTTC-GGC-GGCCTCTCCAGCCG
* * **
18075274 GTTGAATGCCCATACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* *
18075339 CGTACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
18075388 GCAGCACGCT
Statistics
Matches: 704, Mismatches: 91, Indels: 99
0.79 0.10 0.11
Matches are distributed among these distances:
333 91 0.13
334 4 0.01
336 1 0.00
341 4 0.01
342 3 0.00
344 1 0.00
345 1 0.00
346 118 0.17
348 2 0.00
350 2 0.00
353 1 0.00
354 32 0.05
355 6 0.01
356 25 0.04
360 1 0.00
365 1 0.00
366 1 0.00
368 108 0.15
369 4 0.01
372 5 0.01
373 2 0.00
377 2 0.00
378 1 0.00
380 12 0.02
381 274 0.39
382 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (369 bp):
GCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGTAGCAGGACCAGTAGC
AGGATCGACAGCATGCAGAGGGGACCGGGCCGATCCCAGGCTTGCACATTCTGCCTCTCCGGCCG
GCTAGTGCCGACGCTCTTTCTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
GCCGGATCGAGGGTTGTGGTGGAGGACGACAGCGGATTAACAGCACGCAGAGGGGGATCGGGCTG
ATCCCAGCTTACGTGTTATGCCTCTTCGGCGGCCTCTCCAGCCG
Found at i:18074995 original size:26 final size:26
Alignment explanation
Indices: 18074966--18075018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18074956 GTTGACTTAG
18074966 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18074992 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18075018 G
1 G
18075019 ATCTGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18075346 original size:26 final size:26
Alignment explanation
Indices: 18075315--18075364 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18075305 GACTTAGGCA
18075315 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
18075341 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
18075365 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:18075839 original size:159 final size:158
Alignment explanation
Indices: 18075421--18076489 Score: 408
Period size: 159 Copynumber: 6.6 Consensus size: 158
18075411 CAATCCCCAG
* * * * * *
18075421 CTTGTGCATTCTACCTCTCTGACCGGCTGAGCACCCACACGCCCGTTTCATTGGTTGGCTTAGGC
1 CTTGTGCATTCTACCTCTCCGGCC-ACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * * * **
18075486 ATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCTAGGGTTGCGACAGTGGGACCGACAGC
65 ATACGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACCAAGGGTTGCGACAGCAGGACCGACAGC
* * *
18075551 TCGCAGAGGTGGATCGGACCGATCCTTGG
130 ACGCAGAGGTGGACCGGACCGATCCTTGA
* * * * * * * * * *
18075580 CTTGCGCATTATGCCTCTTCGGCCAGCTCAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGC
1 CTTGTGCATTCTACCTCTCCGGCCA-CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* ** * * * *
18075645 ATACGGAGTTCA-TTCTTAGTCTAAG-ATCGGATCGGACCAAGGGTTGCGCCCGCAGGATCGACA
65 ATACGGAGTTCATTTCAT-GTCTAAGCCCCAG-TCGGACCAAGGGTTGCGACAGCAGGACCGACA
* * * *
18075708 GCACGTAGGAGG-GGACCGGGCTGATCTTTGA
128 GCACGCA-GAGGTGGACCGGACCGATCCTTGA
* * * *
18075739 TTTGTGCATTCTACCTCTCCGGTCTACTGGGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
1 CTTGTGCATTCTACCTCTCCGG-CCACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* *
18075804 ATACGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGTAGGACCAGCAAC
65 ATACGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACC-AAGG--GT--T-G--CGA-CAGC-A-
* * *
18075869 GGGATCGACAGCACGCTTAGA-G-GGACCGGGCTGATCCTT-A
119 -GGACCGACAGCACGC--AGAGGTGGACCGGACCGATCCTTGA
** * * * * * * * *
18075909 GCTTACGGATTATGCCTCTCCGACCGACCTCTCAGGTCGGCTAAACATTCGTACGCTTGTTTCAT
1 -CTTGTGCATTCTACCTCTCCG---G-CCACT---G--AGC---AC--CCGCACGCTCGTTTCAT
* * * ** * ** ** ** *
18075974 TGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGGGTCACGGC
51 GGGTTGGCTTAGGCATACGGAGTTCATT-TCATGTCTAAGCCCCAGTCGGACCAAGGGTTGCGAC
* * * * * *
18076038 AGTAGGATCCG-CAGCACGCAG-GGGGGACTGCG-TCGATCCCTGG
115 AGCAGGA-CCGACAGCACGCAGAGGTGGACCG-GACCGATCCTTGA
*** * * * * * * *
18076081 CTTACACATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCATAGGC
1 CTTGTGCATTCTACCTCTCCGGCC-ACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * ** * * * * *
18076146 ATAGGGATTTCATTCCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCTGCGGGACCGGCAG
65 ATACGGAGTTCATTTCATGTCTAAGCCCCAGTC-GGACCAAGGGTTGCGACAGCAGGACCGACAG
* * **
18076210 CACGCAGAGGGGGACCAGG-TCGATCC-CCA
129 CACGCAGAGGTGGACC-GGACCGATCCTTGA
* * * * * * * * *
18076239 GCTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATG
1 -CTTGTGCATTCTACCTCTCCGGCCA-CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * ** ** * *
18076304 CATACGGAGTTCATTCCCA-GCCTAAG-ATCAGATCGGACTGAGGGTTGC-AGCAGCAAGATCGA
64 CATACGGAGTTCATT-TCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGCGA-CAGCAGGACCGA
* * * * *
18076366 TAGCACACAGGGGTGGACCGGGCCGATCC-TCA
126 CAGCACGCAGAGGTGGACCGGACCGATCCTTGA
* * ** * * * *
18076398 GCTTGTGCATTCTGCCTCTCTGGCCAACTGAGCGTCCGCATGTTGGTTTCGTGGGTTGGCTTAGG
1 -CTTGTGCATTCTACCTCTCCGGCC-ACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
*
18076463 CATACGGAGTTCATTCCATGTCTAAGC
64 CATACGGAGTTCATTTCATGTCTAAGC
18076490 ATACGGAGTT
Statistics
Matches: 683, Mismatches: 170, Indels: 113
0.71 0.18 0.12
Matches are distributed among these distances:
157 7 0.01
158 84 0.12
159 384 0.56
160 22 0.03
162 2 0.00
163 2 0.00
164 1 0.00
165 2 0.00
167 3 0.00
168 6 0.01
169 1 0.00
170 4 0.01
171 74 0.11
172 14 0.02
173 3 0.00
174 5 0.01
175 3 0.00
176 1 0.00
177 1 0.00
179 3 0.00
181 2 0.00
182 1 0.00
183 2 0.00
184 54 0.08
185 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CTTGTGCATTCTACCTCTCCGGCCACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
TACGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACCAAGGGTTGCGACAGCAGGACCGACAGCA
CGCAGAGGTGGACCGGACCGATCCTTGA
Found at i:18077225 original size:26 final size:26
Alignment explanation
Indices: 18077185--18077237 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18077175 GTTGACTTAG
*
18077185 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* * *
18077211 GCATATGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
18077237 G
1 G
18077238 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:18077674 original size:26 final size:26
Alignment explanation
Indices: 18077638--18077690 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18077628 GTTGGCTTAG
18077638 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18077664 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18077690 G
1 G
18077691 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18078543 original size:26 final size:26
Alignment explanation
Indices: 18078514--18078564 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18078504 TTGGCTTAGG
*
18078514 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
18078540 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
18078565 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:18079749 original size:26 final size:26
Alignment explanation
Indices: 18079701--18079753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18079691 GTTGACTTAG
*
18079701 GCATACGGAGTTCATCCGTAGTCTAA
1 GCATACGGAGTTCATCCGCAGTCTAA
18079727 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCGCAGTCTAA
18079753 G
1 G
18079754 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCGCAGTCTAA
Found at i:18080204 original size:158 final size:157
Alignment explanation
Indices: 18079727--18080227 Score: 506
Period size: 159 Copynumber: 3.2 Consensus size: 157
18079717 CGTAGTCTAA
* * * * **
18079727 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTACGATAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCAGGATTGAC
* ** * *
18079791 AGCACGTAGGGGGACCGACCTGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCGCC
65 AGCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
* *
18079856 CGCACGCCCATTTCGTGGGATGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * * ** * *
18079884 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGATCTAAGGTTGTGGCAGCGGGATTGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTACGGTAGCAGGATTGAC
* * * * * * ** *
18079948 AGCACGCAGTAGCGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCCCAACG
65 AGCACGCAG--GGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCG
* *
18080013 CCCGCACGCTCATTTCATGGGTTGCCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
18080043 GCATACGAAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTCACGGTAGCAAGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCAGGATTGAC
* * * ** *
18080107 AGCACGCAGGGGAGACCGGGCTGATCCCCGGCTTGTGCATTCTACCTTTCCGACCGACTGAGCCC
65 AGCACGCAGGGG-GACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGC
18080172 CCGCACGCTCA-TTCTGTGGGTTGGCTTAG
129 CCGCACGCTCATTTC-GTGGGTTGGCTTAG
18080201 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18080228 CCCCAGTTGG
Statistics
Matches: 267, Mismatches: 68, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
156 5 0.02
157 56 0.21
158 83 0.31
159 119 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCAGGATTGACA
GCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:18080265 original size:12 final size:12
Alignment explanation
Indices: 18080250--18080280 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
18080240 CAAGGGTTGT
18080250 GACAGCAGGATC
1 GACAGCAGGATC
*
18080262 GACAGCGGGATC
1 GACAGCAGGATC
18080274 GACAGCA
1 GACAGCA
18080281 CGCAAAGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.35, T:0.06
Consensus pattern (12 bp):
GACAGCAGGATC
Found at i:18080422 original size:26 final size:26
Alignment explanation
Indices: 18080385--18080437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18080375 GTTGACTTAG
*
18080385 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18080411 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18080437 G
1 G
18080438 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18080435 original size:684 final size:685
Alignment explanation
Indices: 18079446--18080913 Score: 1834
Period size: 685 Copynumber: 2.1 Consensus size: 685
18079436 GGATCAATCC
* ** ** *
18079446 GATCCCCGGCTTGTGCATTCTGCCTCT-CGGCCGGTTGAGTGCCTGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGACTGAGCCCCTGCACGCTCATTTCGTGGGTT
* * ** ** *
18079510 GGCTTAGGCATACGAAGTTCATTCCATGCCTAAGCCTCAATCGAACTGAGGGTTGTGGTAGTAGG
66 GGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCCCCAATCGAACCAAGGGTTGTGACAGCAGG
* * * * * * * * **
18079575 ACCGGCATCGGGATCGGCAGCATGCAGAGGGGGATCGGGCTAATCCCCGGCTTGCGTATTATGCC
131 ACCGACAGCGGGATCGACAGCACGCAAAGGGGGACCGAGCTAATCCCCGGCTTACACATTATGCC
* * * * *
18079640 TCTCCGTTCGGCCTCTCCGACCGGTTGAGCGCCTGTACGCTCGTTTCATGGGTTGACTTAGGCAT
196 TCTCCATCCGGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
** * * * * *
18079705 ACGGAGTTCATCCGTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAG
261 ACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* *
18079770 GGTTACGATAGCAGGATCGGTAGCACGTA-GGGGGACCGACCTGATCC-CTGGCTTGCACATTCT
326 GGTTACGACAGCAGGATCGGTAGCACGCAGGGGGGACCGACCTGATCCTC-GGCTTGCACATTCT
* *
18079833 GCCTCTCCGGTCGACTGAGCGCCCGCACGCCCATTTCGTGGGATGGCTTAGGCATAGGGAGTTCA
390 GCCTCTCCGGCCGACTGAGCGCCCACACGCCCATTTCGTGGGATGGCTTAGGCATAGGGAGTTCA
* * * *
18079898 TTCCATGTCTAAGCCCCAGCCGGATCTAAGGTTGTGGCAGCGGGATTGACAGCACGCAGTAGCGG
455 TTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCGGGATCGACAGCACGCAGAAGCGG
* * *
18079963 ATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGG-TCGGCCCAACGCCCGCACGCTCATT
520 ACCAGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCT-GGCCCAACGCCCGCACGCTCATT
* * * * ** *
18080027 TCATGGGTTGCCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTCA
584 TCATGGGTTGACTTAGGCATACTG-AGTTAATTCCCACTCTAAAATCAGACCGGACCAAGGGTCA
* * * *
18080091 CGGTAGCAAGATTGACAGCACGCAGGGGAG-ACCGGGCT
648 CAGCAGCAAGATCGACAACACGCAGGGG-GCACCGGGCT
* * *
18080129 GATCCCCGGCTTGTGCATTCTACCTTTCCGACCGACTGAGCCCCCGCACGCTCA-TTCTGTGGGT
1 GATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGACTGAGCCCCTGCACGCTCATTTC-GTGGGT
* * * *
18080193 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGACAGCAG
65 TGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCCCCAATCGAACCAAGGGTTGTGACAGCAG
* *
18080258 GATCGACAGCGGGATCGACAGCACGCAAAGGGGGACCGAGCTGATCCCCGGCTTACACATTATGC
130 GACCGACAGCGGGATCGACAGCACGCAAAGGGGGACCGAGCTAATCCCCGGCTTACACATTATGC
** *** * * *
18080323 CTCTCCATCCGGCCTCTTTGGTTGGCTGAGCTCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCA
195 CTCTCCATCCGGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
18080388 TACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
260 TACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * ** **
18080453 GGGTTATGGCAGTAGGATCGGTAGCACGCAGGGGGGATCGGGCTGATCCTCGGCTTGTGCATTCT
325 GGGTTACGACAGCAGGATCGGTAGCACGCAGGGGGGACCGACCTGATCCTCGGCTTGCACATTCT
* * ** ** *
18080518 GCCTCTCTGGCCGGCTGAGTTCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
390 GCCTCTCCGGCCGACTGAGCGCCCACACGCCCATTTCGTGGGATGGCTTAGGCATAGGGAGTTCA
* * * * * * *
18080583 TTTCATGTCTAAGCCCCTGTCGGACCGAAGGTTGTGGCTGCGGGATCGATAGCACGTAGAAGGGG
455 TTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCGGGATCGACAGCACGCAGAAGCGG
* * * * * *
18080648 ACCAGATCGATCCTCGGCTTGCGTATTATGCCTCTCCGGCTGGCTCAATGCCCGCACGCTCATTT
520 ACCAGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCTGGCCCAACGCCCGCACGCTCATTT
* **
18080713 CGTGGGTTGACTTAGGCATACTGAGTTAATTCCCACTCTAAAATCAGACCGGACCAAGGGTTGCA
585 CATGGGTTGACTTAGGCATACTGAGTTAATTCCCACTCTAAAATCAGACCGGACCAAGGGTCACA
* *
18080778 GCAGCAGGATCGACAACACGTAGGGGGCACCGGGCT
650 GCAGCAAGATCGACAACACGCAGGGGGCACCGGGCT
* * * * *
18080814 AATCCTCGGCTTGTGCATTCTACCTCTCTGGCTGACTGAGCCCCTGCACGCTCATTTCATGGGTT
1 GATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGACTGAGCCCCTGCACGCTCATTTCGTGGGTT
18080879 GGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
66 GGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
18080914 ATACGAAGTT
Statistics
Matches: 661, Mismatches: 116, Indels: 14
0.84 0.15 0.02
Matches are distributed among these distances:
683 28 0.04
684 268 0.41
685 359 0.54
686 6 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (685 bp):
GATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGACTGAGCCCCTGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCCCCAATCGAACCAAGGGTTGTGACAGCAGG
ACCGACAGCGGGATCGACAGCACGCAAAGGGGGACCGAGCTAATCCCCGGCTTACACATTATGCC
TCTCCATCCGGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
GGTTACGACAGCAGGATCGGTAGCACGCAGGGGGGACCGACCTGATCCTCGGCTTGCACATTCTG
CCTCTCCGGCCGACTGAGCGCCCACACGCCCATTTCGTGGGATGGCTTAGGCATAGGGAGTTCAT
TCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCGGGATCGACAGCACGCAGAAGCGGA
CCAGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCTGGCCCAACGCCCGCACGCTCATTTC
ATGGGTTGACTTAGGCATACTGAGTTAATTCCCACTCTAAAATCAGACCGGACCAAGGGTCACAG
CAGCAAGATCGACAACACGCAGGGGGCACCGGGCT
Found at i:18080937 original size:26 final size:26
Alignment explanation
Indices: 18080886--18080938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18080876 GTTGGCTTAG
* *
18080886 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGAAGTTCATTCCAAGCCTAA
*
18080912 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGCCTAA
18080938 G
1 G
18080939 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGCCTAA
Found at i:18081766 original size:26 final size:26
Alignment explanation
Indices: 18081737--18081789 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18081727 GTTGGCTTAG
18081737 GCATACAGAGGTCATT-CCATGTCTAA
1 GCATACAGAGGTCATTCCCA-GTCTAA
* *
18081763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
18081789 G
1 G
18081790 ATGTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:18082341 original size:34 final size:34
Alignment explanation
Indices: 18082297--18082392 Score: 174
Period size: 34 Copynumber: 2.8 Consensus size: 34
18082287 CCAAGCTTGT
*
18082297 GCATCCTGCCTCTCTGGTCGGCTGAGCGTGTGGC
1 GCATCTTGCCTCTCTGGTCGGCTGAGCGTGTGGC
18082331 GCATCTTGCCTCTCTGGTCGGCTGAGCGTGTGGC
1 GCATCTTGCCTCTCTGGTCGGCTGAGCGTGTGGC
*
18082365 GCATCTTGCCTCTCTGCTCGGCTGAGCG
1 GCATCTTGCCTCTCTGGTCGGCTGAGCG
18082393 CCCATACGCT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 60 1.00
ACGTcount: A:0.06, C:0.32, G:0.33, T:0.28
Consensus pattern (34 bp):
GCATCTTGCCTCTCTGGTCGGCTGAGCGTGTGGC
Found at i:18082617 original size:26 final size:26
Alignment explanation
Indices: 18082581--18082633 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18082571 GTTGGCTTAG
18082581 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18082607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18082633 G
1 G
18082634 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18084181 original size:26 final size:26
Alignment explanation
Indices: 18084145--18084196 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18084135 TTGACTTAGT
*
18084145 CATACGGAGTTC-ATCCCCAGTCTAAG
1 CATACAGAGTTCAAT-CCCAGTCTAAG
*
18084171 CATACAGAGTTCAATCCCATTCTAAG
1 CATACAGAGTTCAATCCCAGTCTAAG
18084197 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCAATCCCAGTCTAAG
Found at i:18084644 original size:158 final size:158
Alignment explanation
Indices: 18084170--18084670 Score: 501
Period size: 159 Copynumber: 3.2 Consensus size: 158
18084160 CCCAGTCTAA
* * * * * *
18084170 GCATACAGAGTTCAATCCCAT-TCTAAGATCGGACTGGACCAAGGGTTGCGATAGCAAGATCGAC
1 GCATACGGAGTTC-ATTCCATGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCAGGATCGAC
* * * *
18084234 AGCATC-TAGGGGGGACCGGGTCGA-TCCCTGACTTGCGCATTCTGCCTCTCTGACTGGCTGAGC
65 AGCA-CGCAGGGAGGACCGGGTCGATTCCC-GGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGC
* * * * *
18084297 ACCCGCACGCCCATTTCATGGGATGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** * * *
18084328 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACCGAGGGTTATGGCAGCGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTACGATAGCAGGATCGAC
* * ** * * * *
18084392 AGCACGCAGCGAGGGACTGGACCGATCCCCGGCTTGTGCATTATGCCTCTCCGACTGGCTCAGCG
65 AGCACGCAGGGA-GGACCGGGTCGATTCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCG
* * **
18084457 CCCGCACACTCGTTTTGTGGGTTAACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
18084487 GCATACGGAGCTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCAGGATCGAC
* * * *
18084551 AGCACGCAGGGAGGACCGGGTCGATTCTCGGCTTGCGCATTCTACCTCTCCGACTAGTTGAGCGC
65 AGCACGCAGGGAGGACCGGGTCGATTCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGC
* *
18084616 CCACACGCTCGTTCCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
18084645 GCATA-GGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18084671 CATATGAAGT
Statistics
Matches: 267, Mismatches: 68, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.01
157 25 0.09
158 115 0.43
159 116 0.43
160 8 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCAGGATCGACA
GCACGCAGGGAGGACCGGGTCGATTCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18085070 original size:26 final size:26
Alignment explanation
Indices: 18085025--18085077 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18085015 GTTGACTTAG
*
18085025 GCATACAGAATTTATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
18085051 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
18085077 G
1 G
18085078 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:18085578 original size:26 final size:26
Alignment explanation
Indices: 18085526--18085578 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18085516 GTTGGCTTAG
* **
18085526 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGCCTAA
18085552 GCATACAGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
18085578 G
1 G
18085579 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:18092476 original size:159 final size:159
Alignment explanation
Indices: 18092309--18092659 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 159
18092299 TGTGCGTTGG
* * * * * *
18092309 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTC-GATCGAGGGTTGTGGCAGCAGG
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC-CAAACCGAGGGTTGCGGCAGCAAG
** * * *
18092372 ACCGGTAGCACGCAGAGGGGGACCGG-GCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAG
65 ACCGACAGCACGCAG-GGGAGACCGGATC-GATCCCCAGCTTGCGCATTATACCTCTCCGGCCAG
* *
18092436 CTCAGCGCTC-GCATGCTCGTTTCGTGGGTTAA
128 CTCAGCAC-CGGCACGCTCGTTTCGTGGGTTAA
* * *
18092468 CTTAGGCATACGGAGTTCATTCCCTGTCTAA-CATCAGACCAAACCGAGGGTTGCGGTAGCAAGA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTGCGGCAGCAAGA
* * * * * * * *
18092532 TCGACAGCACGTAGGGGAGACCGGATCGGTCCCCGGCTTGTGCATTCTACCTCTCCGGCTAGCTG
66 CCGACAGCACGCAGGGGAGACCGGATCGATCCCCAGCTTGCGCATTATACCTCTCCGGCCAGCTC
**
18092597 AGCACCGGCACGCTCGTTTCGTGGGTTGG
131 AGCACCGGCACGCTCGTTTCGTGGGTTAA
* *
18092626 CTTAGGCATACGGAGTCCATTCAATGTCTAAGCA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
18092660 TACGGAGTTC
Statistics
Matches: 158, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 96 0.61
159 61 0.39
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTGCGGCAGCAAGA
CCGACAGCACGCAGGGGAGACCGGATCGATCCCCAGCTTGCGCATTATACCTCTCCGGCCAGCTC
AGCACCGGCACGCTCGTTTCGTGGGTTAA
Found at i:18093497 original size:158 final size:158
Alignment explanation
Indices: 18092960--18094462 Score: 1085
Period size: 159 Copynumber: 9.5 Consensus size: 158
18092950 TCTCTGGTCG
* ** * * * *
18092960 GCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATACAGAGTTCA
1 GCCTCTTCGACCGGCTGAGCACCCTCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* * * * * * * *
18093025 TTCCCA-GTCTAAGATCGGACCAGATCGAGGGTTGCGACAGTAAGATCGATAGCACGCAGGGGGG
66 TT-CCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGG
* * ** *
18093089 ACCCGGTTGATCCCTGGCTTGCGCATTCT
130 ATCGGGCCGATCCCCGGCTTGCGCATTCT
* * * * * * * **
18093118 ACCTCTTCTACCGGCTGGGCACCCGCACGTCCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTTCGACCGGCTGAGCACCCTCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* ** * * *
18093183 TTCCATGTCTAAG-CCCCATCTGGATCGAGGGTTGTGGTAGCGGGA-CAGGCAGCACGCAGGGGG
66 TTCCATGTCTAAGATCAGATC-GGATCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCA-GGGG
* * * * *
18093246 GGACCGGGGCGATCCCTGGCTTGTGCATTAT
128 GGATCGGGCCGATCCCCGGCTTGCGCATTCT
** * * * * * * * * *
18093277 GCCTCTTCGGTCGGCTCAGCACCCGCACGCTCATTTTGGGGGTTGACTTATGCGTATAGAGTTCA
1 GCCTCTTCGACCGGCTGAGCACCCTCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
** * * *
18093342 TTCTCA-GTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGATCGATAGCACGTAGGGGGG
66 TTC-CATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGG
* *
18093406 ACCGAGCCGATCCCCGGCTTGCGCATTCT
130 ATCGGGCCGATCCCCGGCTTGCGCATTCT
* * * * * * **
18093435 ACCTCTCCGACCAGCTGAGCACCCTTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTTCGACCGGCTGAGCACCCTCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
** * * * *
18093500 TTCCATGTCTAAGCCCCA-ATCGGATCGAGGGTTGTGGCAACGGGACCGACAGCACACAGAGGGG
66 TTCCATGTCTAAG-ATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGG
* * * * *
18093564 GACCGAGCCAATCCCCAGCTTGCGCATTAT
129 GATCGGGCCGATCCCCGGCTTGCGCATTCT
* * ** * * *
18093594 GCCTCTTC-AGCCAGCTCAG-TGCCTGCACGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTT
1 GCCTCTTCGA-CCGGCTGAGCACCCT-CACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
* *
18093657 CATTTCCA-GTCTAAGATCAGATCGGA-CTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAAGG
64 CA-TTCCATGTCTAAGATCAGATCGGATC-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGG
* *
18093720 GGGATCAGGG-TGATCCCCGGCTTGCGCATTTT
127 GGGATC-GGGCCGATCCCCGGCTTGCGCATTCT
** * * * * * **
18093752 GCCTCTTCGGTCGGCTGAGC-GCCTGCACGCCCATTTCATTGGTTGGCTTAGGCATAGGGAGTTC
1 GCCTCTTCGACCGGCTGAGCACCCT-CACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* ** * * **
18093816 ATTCGATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGTC-GAGG
65 ATTCCATGTCTAAG-ATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACG-CAG-GG
* ** * *
18093879 GGGATCGGGTCGATCCTTGGCTTGTGCATTAT
127 GGGATCGGGCCGATCCCCGGCTTGCGCATTCT
* * ** * * **
18093911 GCCTCTTCGATCGGCTCAG-TGCCTGTACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTC
1 GCCTCTTCGACCGGCTGAGCACCCT-CACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * * * * *
18093975 ATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCA-AGGG
65 ATT-CCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGG
* * *
18094038 GATCGGGTCGATCCTCGGCTTACGCATTCT
129 GATCGGGCCGATCCCCGGCTTGCGCATTCT
** * * ** **
18094068 GCCTC-TCTGATCC-GCTGAGTGCCCGCACGCCTGTTTCGTGGGTTGGTTTAGGCATAGGGAGTT
1 GCCTCTTC-GA-CCGGCTGAGCACCCTCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
*** * * ** ** *
18094131 CATTCCATGTCTAATCCCTAG-CCGGATCGATGGTTGTGGCAGTGGGATCGGTAGCATGCAGAGG
64 CATTCCATGTCTAAGATC-AGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GG
** * * *
18094195 CAGATCGGGCCGATCCCCAGCTTGCACATTTT
127 GGGATCGGGCCGATCCCCGGCTTGCGCATTCT
* * ** * * *
18094227 GCCTCTTCGGCCGGCTCAGTGCCCGT-ACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTC
1 GCCTCTTCGACCGGCTGAGCACCC-TCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * *
18094291 ATTCC-TAGTCTAAGATCAGATCGGA-CTAAAGGTTGTGGCAGTC-GGATCGACAGCACGCAGGT
65 ATTCCAT-GTCTAAGATCAGATCGGATC-GAGGGTTGTGGCAG-CAGGATCGACAGCACGCAGGG
* *
18094353 GGGATTGGGCCGATCCCCGGCTCGCGCATTCT
127 GGGATCGGGCCGATCCCCGGCTTGCGCATTCT
* * * *
18094385 ACCTCTTCGATCGGCTGAGC-GCCTGCAC-CCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
1 GCCTCTTCGACCGGCTGAGCACCCT-CACGCC-CGTTTCGTGGGTTGACTTAGGCATACAGAGTT
*
18094448 CCTTCCATGTCTAAG
64 CATTCCATGTCTAAG
18094463 CATATGGAGT
Statistics
Matches: 1049, Mismatches: 250, Indels: 92
0.75 0.18 0.07
Matches are distributed among these distances:
156 6 0.01
157 126 0.12
158 428 0.41
159 473 0.45
160 16 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
GCCTCTTCGACCGGCTGAGCACCCTCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
TTCCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGA
TCGGGCCGATCCCCGGCTTGCGCATTCT
Found at i:18093566 original size:317 final size:315
Alignment explanation
Indices: 18092960--18094463 Score: 1649
Period size: 317 Copynumber: 4.7 Consensus size: 315
18092950 TCTCTGGTCG
* * * * * *
18092960 GCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATACAGAGTTCA
1 GCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTATGCATACAGAGTTCA
* * * * * * *
18093025 TTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGTAAGATCGATAGCACGCAGGGGGGA
66 TTCCCAGTCTAAGATCAGATCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGA
* ** * * * * * *
18093090 CCCG-GTTGATCCCTGGCTTGCGCATTCTACCTCTTCTACCGGCTGGGCACCCGCACGTCCGTTC
130 -TCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGC-CCCTCACGCCCGTTT
18093154 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-ATCTGGATCGAGGGTTGT
193 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATC-GGATCGAGGGTTGT
* * * * ** *
18093218 GGTAGCGGGACAGGCAGCACGCAGGGGGGGACCGGGGCGATCCCTGGCTTGTGCATTAT
257 GGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTAT
* ** * ** * *
18093277 GCCTCTTCGGTCGGCTCAGCACCCGCACGCTCATTTTGGGGGTTGACTTATGCGTATAGAGTTCA
1 GCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTATGCATACAGAGTTCA
* * * * *
18093342 TTCTCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGATCGATAGCACGTAGGGGGGA
66 TTCCCAGTCTAAGATCAGATCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGA
* * * * *
18093407 CCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCCTTATGCCCGTTTC
130 TCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGC-CCCTCACGCCCGTTTC
18093472 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGG
194 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGG
* * * * *
18093537 CAACGGGACCGACAGCACACAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTAT
259 CAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTAT
* * * *
18093594 GCCTCTTCAGCCAGCTCAGTGCCTGCACGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCA
1 GCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTATGCATACAGAGTTCA
* * * *
18093659 TTTCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAAGGGGGA
66 TTCCCAGTCTAAGATCAGATCGGAC-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGA
** * * ** * *
18093724 TC-AGGGTGATCCCCGGCTTGCGCATTTTGCCTCTTCGGTCGGCTGAGCGCCTGCACGCCCATTT
130 TCGA-GCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCCCCT-CACGCCCGTTT
* * * *
18093788 CATTGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGTCGGATCGAGGGTTGTG
193 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTG
* * * *** *
18093853 GCAGCGGGACCGGTAGCACGTC-GAGGGGGATCGGGTCGATCCTTGGCTTGTGCATTAT
258 GCAGCGGGACCGGCAGCACG-CAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTAT
** * * *
18093911 GCCTCTTCGATCGGCTCAGTGCCTGTACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCA
1 GCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTATGCATACAGAGTTCA
* * * *
18093976 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCA-AGGGGA
66 TTCCCAGTCTAAGATCAGATCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGA
* * * * * * * *
18094040 TCGGGTCGATCCTCGGCTTACGCATTCTGCCTC-TCTGATCC-GCTGAGTGCCCGCACGCCTGTT
130 TCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTC-GA-CCGGCTGAG-CCCCTCACGCCCGTT
* * * ** *
18094103 TCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCTAGCCGGATCGATGGTTGT
192 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGT
* * * * ** * * *
18094168 GGCAGTGGGATCGGTAGCATGCAGAGGCAGATCGGGCCGATCCCCAGCTTGCACATTTT
257 GGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTAT
* *
18094227 GCCTCTTCGGCCGGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCA
1 GCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTATGCATACAGAGTTCA
* * * * *
18094292 TTCCTAGTCTAAGATCAGATCGGACTAAAGGTTGTGGCAGTC-GGATCGACAGCACGCAGGTGGG
66 TTCCCAGTCTAAGATCAGATCGGAC-GAGGGTTGCGGCAG-CAGGATCGACAGCACGCAGGGGGG
* * * * *
18094356 ATTGGGCCGATCCCCGGCTCGCGCATTCTACCTCTTCGATCGGCTGAGCGCCTGCAC-CCTCGTT
129 ATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCCCCT-CACGCC-CGTT
* * *
18094420 TCGTGGGTTGACTTAGGCATACGGAGTTCCTTCCATGTCTAAGC
192 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18094464 ATATGGAGTT
Statistics
Matches: 995, Mismatches: 173, Indels: 38
0.83 0.14 0.03
Matches are distributed among these distances:
315 4 0.00
316 268 0.27
317 716 0.72
318 7 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (315 bp):
GCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTATGCATACAGAGTTCA
TTCCCAGTCTAAGATCAGATCGGACGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGAT
CGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCCCCTCACGCCCGTTTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGGCA
GCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTAT
Found at i:18094472 original size:26 final size:26
Alignment explanation
Indices: 18094436--18094488 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18094426 GTTGACTTAG
*
18094436 GCATACGGAGTTCCTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18094462 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18094488 G
1 G
18094489 ATTTTGAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18096042 original size:171 final size:171
Alignment explanation
Indices: 18095714--18096043 Score: 400
Period size: 171 Copynumber: 1.9 Consensus size: 171
18095704 ATATCGAACC
* *
18095714 GAGGGTTGTGGCAGCAGGACCAGCAGCAAGATAGACAGCACGTAGGGAGGGACAGGGCCGATCTC
1 GAGGGTTGTGGCAACAGGACCAGCAGCAAGATAGACAGCACGCAGGGAGGGACAGGGCCGATCTC
* * ** * * *
18095779 CGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTA
66 CGGATTGTGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTA
* * *
18095844 GGCATATGAATTTCATTCCATGTCTAAGCCCCAGCCAGACT
131 GGCATACGAAGTTCATCCCATGTCTAAGCCCCAGCCAGACT
* * * * *
18095885 GAGGGTTGTGGCAATAGGACC-GACAGCGAGATTA-CCAGCACGCAGAGG-GGGACTGGGCTGAT
1 GAGGGTTGTGGCAACAGGACCAG-CAGCAAGA-TAGACAGCACGCAG-GGAGGGACAGGGCCGAT
* *
18095947 C-CACGGATTGTGCATTATGCCTCTCCGACCGACTGAGCACCTGCACGCTTGTTTCATGGGTTGA
63 CTC-CGGATTGTGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGA
*
18096011 CTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
127 CTTAGGCATACGAAGTTCAT-CCCATGTCTAAGC
18096044 ATACAAAGTT
Statistics
Matches: 134, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
170 2 0.01
171 125 0.93
172 7 0.05
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (171 bp):
GAGGGTTGTGGCAACAGGACCAGCAGCAAGATAGACAGCACGCAGGGAGGGACAGGGCCGATCTC
CGGATTGTGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTA
GGCATACGAAGTTCATCCCATGTCTAAGCCCCAGCCAGACT
Found at i:18096398 original size:159 final size:156
Alignment explanation
Indices: 18096042--18096399 Score: 326
Period size: 159 Copynumber: 2.3 Consensus size: 156
18096032 CCCAGTCTAA
* * * * * * *
18096042 GCATACAAAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGTTAGCAGGATAGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGAT-AGACTGGACCGAGGGTTGCGGTAGCAGGACAGGCA
* * * * *
18096107 GCACGTAGGCGGGACCAGGCCGATCCCCGGCTATCGCATTCTATCTCTCTAGCGACTGAGCGCCC
65 GCACGTAGGCGGGACCAGGCCGATCCCCGGCTATCGCATTATACCTCTCCACCGACTCAGCGCCC
* * * *
18096172 GTACGCCCGTTTCGTTGGTTGGCTTAG
130 GAACGCCCGTTTCGTGGGTTGACTGAG
** * ** * * *
18096199 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGTAGCCGGACCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG--ATAGACTGGACCGAGGGTTGCGGTAGCAGGACAGG
* * * * * *
18096262 CAGCACGTAGAGGGGGATCGGGCCGATCCCTGGCT-TGCGCATTATGCCTCTCCATCCGGCTCAG
63 CAGCACGTAG-GCGGGACCAGGCCGATCCCCGGCTAT-CGCATTATACCTCTCCA-CCGACTCAG
* * *
18096326 TGCCCGAACTCTCGTTTCGTGGGTTGACTGAG
125 CGCCCGAACGCCCGTTTCGTGGGTTGACTGAG
18096358 GCATACAGAGTTCATTCCCAGTCTAAGATAGAACTGGACCGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATAG-ACTGGACCGA
18096400 AAGTTGCAAC
Statistics
Matches: 154, Mismatches: 38, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.02
157 54 0.35
158 34 0.22
159 60 0.39
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATAGACTGGACCGAGGGTTGCGGTAGCAGGACAGGCAG
CACGTAGGCGGGACCAGGCCGATCCCCGGCTATCGCATTATACCTCTCCACCGACTCAGCGCCCG
AACGCCCGTTTCGTGGGTTGACTGAG
Found at i:18096570 original size:157 final size:159
Alignment explanation
Indices: 18096181--18096577 Score: 390
Period size: 157 Copynumber: 2.5 Consensus size: 159
18096171 CGTACGCCCG
* * * *
18096181 TTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGACGGACCGAGGGTT
* * * * *
18096246 GTGGTAGCCGGACCGGCAGCACGTAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCT
66 GTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCA
* * ** * *
18096311 CTCCATCCGGCTCAGTGCCCGAACTCTCG
131 CTCCAGCCGGCTAACCGCCCGAACACTCA
* * * * **
18096340 TTTCGTGGGTTGACTGAGGCATACAGAGTTCATTCCCA-GTCTAAG--ATAGAACTGGACCGAAA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-AC-GGACCGAGG
*** * * * * *
18096402 GTTGCAACAGCAGGATCGACAGCACGTAG-GGGGGATCGGG-TGGTCCCTAGCTTGCGTATTCTG
63 GTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATG
* * * * *
18096465 CCACTCCGGCTGGCTAACCGCTCGCACACTTA
128 CCACTCCAGCCGGCTAACCGCCCGAACACTCA
* * * *
18096497 TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGACGGACCGAGGGTT
18096562 GTGGCAGCAGGACCGA
66 GTGGCAGCAGGACCGA
18096578 TAGCGGGATC
Statistics
Matches: 184, Mismatches: 48, Indels: 14
0.75 0.20 0.06
Matches are distributed among these distances:
156 3 0.02
157 99 0.54
158 13 0.07
159 66 0.36
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGACGGACCGAGGGTT
GTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCA
CTCCAGCCGGCTAACCGCCCGAACACTCA
Found at i:18096729 original size:26 final size:26
Alignment explanation
Indices: 18096699--18096751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18096689 GTTGACTTAG
*
18096699 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18096725 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18096751 G
1 G
18096752 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18097075 original size:26 final size:26
Alignment explanation
Indices: 18097040--18097092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18097030 GTTGACTTAG
* *
18097040 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
*
18097066 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
18097092 G
1 G
18097093 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:18097333 original size:330 final size:336
Alignment explanation
Indices: 18096665--18097403 Score: 851
Period size: 330 Copynumber: 2.2 Consensus size: 336
18096655 CGACCGATTG
**
18096665 AGCACCCATACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCACCCGCACACTCG-TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
*
18096730 CGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGAATCGATAGCACG
65 CGAAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT---GTAGCAGAATC-A-AGCACG
* *
18096795 TAGAGGGGATCGGGTGGTCCCTGACTTACGCATTCTGCCTCTTCGGATGGTTGAGCGCCCTCACA
125 TAGAGGGGATCGGGTGATCCCTGACTTACGCATTCTGCCTCTTCGGATGGTTGAGCGACCTCACA
* *
18096860 CCCATTTTGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAT
190 CCCATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAG
** * * *
18096925 GGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATTGATTTGATCCTTGACTTACACATTCT
255 GGTTGTGGCAGCGAAACCGACAGCACGCAGAAGGGGATAGATTCGATCCTCGACTTACACATTCT
18096990 ACCTCTCCGACTGGCTA
320 ACCTCTCCGACTGGCTA
* * *
18097007 AGCGCCCGCACACTCGTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATAC
1 AGCACCCGCACACTCGTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * *
18097072 GGAGTTAATTCCCAGTCTAAGATC-GAACCGGATCGAGGG-T-TA-C-G-A-C-AGCACGTAGGG
66 GAAGTTAATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTAGCAGAATCAAGCACGTAGAG
* * *
18097129 GGGA-CTGGGTCGATCTCC-GGCTTGCGCATTCTGCCTC-TCTGACTGGTTGAGC-ACCTGCACA
130 GGGATC-GGGT-GATC-CCTGACTTACGCATTCTGCCTCTTCGGA-TGGTTGAGCGACCT-CACA
* * * *
18097190 CCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAG
190 CCCATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAG
* * ***
18097255 GGTTGTGGCAGCGAAACC-AGCAGCACGCAGAGGGGGATCAGA-TCGATCCTCGGCTTGTGCATT
255 GGTTGTGGCAGCGAAACCGA-CAGCACGCAGAAGGGGAT-AGATTCGATCCTCGACTTACACATT
* * * *
18097318 TTGCCTCTTCGACTGGCTG
318 CTACCTCTCCGACTGGCTA
* * * * * * *
18097337 AGCACCCGTACATTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCAT
1 AGCACCCGCACACTC-GTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCAT
18097401 ACG
64 ACG
18097404 TCGGAGCATC
Statistics
Matches: 342, Mismatches: 45, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
328 1 0.00
329 26 0.08
330 170 0.50
331 44 0.13
332 1 0.00
333 1 0.00
334 1 0.00
335 1 0.00
336 2 0.01
340 2 0.01
341 80 0.23
342 13 0.04
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (336 bp):
AGCACCCGCACACTCGTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
GAAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGAATCAAGCACGTAGAGG
GGATCGGGTGATCCCTGACTTACGCATTCTGCCTCTTCGGATGGTTGAGCGACCTCACACCCATT
TCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGT
GGCAGCGAAACCGACAGCACGCAGAAGGGGATAGATTCGATCCTCGACTTACACATTCTACCTCT
CCGACTGGCTA
Found at i:18098199 original size:26 final size:26
Alignment explanation
Indices: 18098170--18098220 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18098160 GTTGACTTAG
18098170 GCATACAG-AGTTCATCCCCAGTCTAT
1 GCATA-AGAAGTTCATCCCCAGTCTAT
* *
18098196 GCATATGAAGTTCATTCCCAGTCTA
1 GCATAAGAAGTTCATCCCCAGTCTA
18098221 AGATCAGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAT
Found at i:18098550 original size:26 final size:26
Alignment explanation
Indices: 18098514--18098566 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18098504 TTTGGCTTAG
18098514 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
18098540 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18098566 G
1 G
18098567 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18099462 original size:158 final size:159
Alignment explanation
Indices: 18099273--18099582 Score: 354
Period size: 159 Copynumber: 2.0 Consensus size: 159
18099263 GCCCCAGTCA
* ** * * * * **
18099273 GACTGAGGGTTGTGGCAGCGGGACTGGCAGCACACAGAGGGGGACTGGGCCGAT-CCTGGCTTAC
1 GACTGAGGGTTGCGGCAGCAAGACTGACAGCACACAGAGAGGGACCGAGCCGATCCCCAGCTTAC
*
18099337 GCATTATGCCTATCCGACCGACTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACA
66 GCATTATGCCTATCCGACCGACTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACA
18099402 GAGTTCATTCCCAATCTAAGATTAGAACG
131 GAGTTCATTCCCAATCTAAGATTAGAACG
* *
18099431 GACTGAGGGTTGCGGCAGCAAGA-TCGACAGCACACAGAGAGGTACCGAGCCGATCCCCAGCTTG
1 GACTGAGGGTTGCGGCAGCAAGACT-GACAGCACACAGAGAGGGACCGAGCCGATCCCCAGCTTA
* * * ** ** * * * ** *
18099495 CGCATTCTGCCTCTCTGGTCGGTTGAGTGGCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAC
65 CGCATTATGCCTATCCGACCGACTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC
* *
18099560 GGAGTTCATTCCCAATTTAAGAT
130 AGAGTTCATTCCCAATCTAAGAT
18099583 CGGACCAGAC
Statistics
Matches: 123, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
157 1 0.01
158 44 0.36
159 78 0.63
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
GACTGAGGGTTGCGGCAGCAAGACTGACAGCACACAGAGAGGGACCGAGCCGATCCCCAGCTTAC
GCATTATGCCTATCCGACCGACTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACA
GAGTTCATTCCCAATCTAAGATTAGAACG
Found at i:18107024 original size:26 final size:26
Alignment explanation
Indices: 18106975--18107027 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18106965 GTTGGCTTAG
*
18106975 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
18107001 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
18107027 G
1 G
18107028 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:18107391 original size:26 final size:26
Alignment explanation
Indices: 18107355--18107407 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18107345 GTTGACTTAG
*
18107355 GCATATGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
18107381 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
18107407 G
1 G
18107408 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:18107758 original size:159 final size:156
Alignment explanation
Indices: 18107381--18107815 Score: 405
Period size: 159 Copynumber: 2.8 Consensus size: 156
18107371 CCCAATCTAA
* *
18107381 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTCGTAGTAGGATCGACA
1 GCATACG-AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG-CGTAGCAGGATCGACA
** * * * *
18107446 GCACGCAG-GGGGGAACGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCAGGCTGAACGC
64 GCACATAGAGGGGG-ACGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTCAACGC
* * **
18107510 CCGCACGCCCGTTTTGTGGGTTGGCTTAG
128 CCGCACGCCCATTTCGTGGGTTAACTTAG
* ** * * *
18107539 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATA-CGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTG-CGTAGCAGGATCGA
* * * *
18107602 CAGCACATAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATTCCTCTTCGACCGGCTCAGC
62 CAGCACATAGAGGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTCAAC
* * * **
18107667 GCCTGTACGCTCATTTCGTGGGTTAACTTTT
126 GCCCGCACGCCCATTTCGTGGGTTAACTTAG
* * * * *
18107698 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGAGTTGCAGTAGCAGGATCGATA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-GTAGCAGGATCGACA
* * *
18107763 G--CAT-GTAGGGGGACCGGGCCGATGCCCGACTTGCGCATTCTGCCTCTCCGACC
64 GCACATAG-AGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACC
18107816 AACTGAGCAC
Statistics
Matches: 223, Mismatches: 43, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 46 0.21
158 60 0.27
159 113 0.51
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGTAGCAGGATCGACAGC
ACATAGAGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTCAACGCCCG
CACGCCCATTTCGTGGGTTAACTTAG
Found at i:18107886 original size:26 final size:26
Alignment explanation
Indices: 18107856--18107908 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18107846 TTGGCTTAGG
*
18107856 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18107882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18107908 G
1 G
18107909 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18109113 original size:171 final size:169
Alignment explanation
Indices: 18108827--18109403 Score: 535
Period size: 171 Copynumber: 3.5 Consensus size: 169
18108817 GCATCGGGAC
* * * * * *
18108827 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGTGCTTTATGCCTCTCTGACCGGTTC
1 CGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGTTG
* * * * * * *
18108892 AGCACCCGCACGCTCATTTCGTGGGTTGACTGAGGCATATGAAGTTCATTCATAGTCTAAGATCG
66 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC-TAGTCTAAGATCA
*
18108957 GACCAAACCAAGGGTTGTGATAGCAGGAGCAGCAGTA-GGAAT
130 GACCAAACCGAGGGTTGTGATAGCAGGA-CAG-A-TACGGAAT
* *
18108999 -GACAGCAGGCA-AGGTGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTT
1 CGACAGCACGCAGAGG-GGGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGTT
* * * * **
18109062 GAGCGCCCGTACGCTTGTTTCATGGGTTGGCTTACGCATACGGAGTTCATTCTATGTCTAAGCCC
65 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTA-GTCTAAG-AT
* * * * *
18109127 CAG-TCAAACTGAGGGTTGTGGTAGCAGGACCGATAGCGGGAT
128 CAGACCAAACCGAGGGTTGTGATAGCAGGACAGATA-CGGAAT
* * * * * * *
18109169 CAACAGCACGTAGAGGGGGACCGGCCTGATCCCCGGCTTATGCATTAC-GCCTCTCCGGCTGGCT
1 CGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTGTGCATT-CTGCCTCTCCGGCCGGTT
* *
18109233 GAGCGCCCGCA-TCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
65 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CTAGTCTAAGATC
*
18109297 AGACCAGACCGAGGG-T-TG-T----GG-CAG-TA-GG-AT
129 AGACCAAACCGAGGGTTGTGATAGCAGGACAGATACGGAAT
* * * * * *
18109327 CGACAGCACGCAG-GGGGGATCGAG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGATT
1 CGACAGCACGCAGAGGGGGACCGGGCT-GATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGTT
18109390 GAGCGCCCGCACGC
65 GAGCGCCCGCACGC
18109404 CTGTTTTCAT
Statistics
Matches: 332, Mismatches: 60, Indels: 40
0.77 0.14 0.09
Matches are distributed among these distances:
156 2 0.01
157 48 0.14
158 14 0.04
159 2 0.01
161 2 0.01
162 2 0.01
163 2 0.01
167 1 0.00
168 4 0.01
169 5 0.02
170 62 0.19
171 182 0.55
172 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (169 bp):
CGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGTTG
AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTAGTCTAAGATCAG
ACCAAACCGAGGGTTGTGATAGCAGGACAGATACGGAAT
Found at i:18109612 original size:160 final size:158
Alignment explanation
Indices: 18109171--18109770 Score: 505
Period size: 160 Copynumber: 3.8 Consensus size: 158
18109161 AGCGGGATCA
* * ** * * *
18109171 ACAGCACGTAGAGGGGGACCGGCCTGATCCCCGGCTTATGCATTACGCCTCTCCGGCTGGCTGAG
1 ACAGCACGCAGAGGGGGACCGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAG
* * *
18109236 CGCCCGCA-TCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
65 CGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGA
* *
18109300 CCAGACCGAGGGTTGTGGCAGTAGGATCG
130 CCAGACCGAAGGTTGTGGCAGTAGGACCG
* * **
18109329 ACAGCACGCAG-GGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAG
1 ACAGCACGCAGAGGGGGACCG-GTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAG
* *** * * * * *
18109393 CGCCCGCACGCCTGTTTTCATCAATTGGCTTCGGCATAGGGAGTTCA-TACCATGTCTAAGCCCT
65 CGCCCGCACGCTTG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACC-
** * *
18109457 AG-CTGGACTGAAGGTTGTGGC-GATGGGACCG
127 AGACCAGACCGAAGGTTGTGGCAG-TAGGACCG
* * * ** *
18109488 GCAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGGGCATTATGCCTCTTTGACCGGCTCAG
1 ACAGCACGCAGAGGGGGACC-GGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAG
* * ** ***
18109553 CGCCCGTACGCTTGTTTCGTGGGTTGACTTTTGCATACGGAGTTCATTCCCCAGTCTAAGGTTAG
65 CGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCTAAGACCAG
* * * * * *
18109618 ATC-GAACCGAGGGTTGAGGTAGCAGGATCG
129 ACCAG-ACCGAAGGTTGTGGCAGTAGGACCG
* * * * * *
18109648 ACAGCACGTAG-GGGGGACCAGATTGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGGCTGA
1 ACAGCACGCAGAGGGGGACC-GGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC-GGCTGA
* * ** * *
18109712 GCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCTGTCTAAG
64 GCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
18109771 CATATGGAGT
Statistics
Matches: 344, Mismatches: 84, Indels: 28
0.75 0.18 0.06
Matches are distributed among these distances:
157 48 0.14
158 28 0.08
159 129 0.38
160 134 0.39
161 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
ACAGCACGCAGAGGGGGACCGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGC
GCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGAC
CAGACCGAAGGTTGTGGCAGTAGGACCG
Found at i:18110507 original size:26 final size:27
Alignment explanation
Indices: 18110454--18110507 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
18110444 GTTGACGTAG
*
18110454 GCATACGGAGTTCATCCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCCAATCTAA
* *
18110481 GCATATGGAGTTCAT-TCCCAATCTAA
1 GCATACGGAGTTCATCCCCCAATCTAA
18110507 G
1 G
18110508 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATCCCCCAATCTAA
Found at i:18111205 original size:26 final size:26
Alignment explanation
Indices: 18111169--18111221 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18111159 GTTGACTTAC
18111169 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
18111195 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18111221 G
1 G
18111222 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18111660 original size:158 final size:158
Alignment explanation
Indices: 18111195--18111695 Score: 579
Period size: 159 Copynumber: 3.2 Consensus size: 158
18111185 CCCAGTCTAA
* * * *
18111195 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGA-TCGAGGGTTGA-GGTAGCAGGATCGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACT-GAGGGTT-ATGGCAGCAGGATTGG
* * * * *
18111258 TAGCATGCA-GGGGGACTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGTG
64 TAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCTGACCGGTTGAGTG
18111322 CCCGCACGC-CTGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * * * * * *
18111352 GCATAGGGAGTTCATTCCGTA-TCTAA-ACCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACTGG
1 GCATACGGAGTTCATTCC-TAGTCTAAGA-TCAAACCGGACTGAGGGTTATGGCAGCAGGATTGG
* * *
18111415 TAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTTTACCTCT-TCGGCCGGCTT-A
64 TAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCT-GACCGG-TTGA
* * *
18111478 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 GTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * *
18111511 GCATACAAAGTTCATTCCTAGTCTAAGATCAAACCAGACTGAGGGTTATGGCAGCAGGATTGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACTGAGGGTTATGGCAGCAGGATTGGTA
** * **
18111576 GCACATAGGGGGGACCAGGCCGATCCCCAACTTGCGCATTTTGCCTCTCTGACCGGTTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCTGACCGGTTGAGTGCC
18111641 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
18111669 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
18111696 CTTACGGAGT
Statistics
Matches: 285, Mismatches: 45, Indels: 27
0.80 0.13 0.08
Matches are distributed among these distances:
156 1 0.00
157 57 0.20
158 98 0.34
159 125 0.44
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACTGAGGGTTATGGCAGCAGGATTGGTA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCTGACCGGTTGAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:18111702 original size:26 final size:26
Alignment explanation
Indices: 18111672--18111721 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18111662 GGCTTAGGCA
18111672 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
18111698 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
18111722 ATTTTGAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:18112163 original size:25 final size:26
Alignment explanation
Indices: 18112135--18112189 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
18112125 TTTTTTCTAA
*
18112135 AAAAATTTTAAAAAATCCTG-ACCAC
1 AAAAACTTTAAAAAATCCTGAACCAC
18112160 AAAAACTTTAAAAAATCCTGAACCAC
1 AAAAACTTTAAAAAATCCTGAACCAC
18112186 AAAA
1 AAAA
18112190 TAGAAAACAG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 19 0.68
26 9 0.32
ACGTcount: A:0.56, C:0.20, G:0.04, T:0.20
Consensus pattern (26 bp):
AAAAACTTTAAAAAATCCTGAACCAC
Found at i:18113090 original size:159 final size:158
Alignment explanation
Indices: 18112788--18113290 Score: 527
Period size: 159 Copynumber: 3.2 Consensus size: 158
18112778 CGTAGTCTAA
* *** * * **
18112788 GCATATGGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGATCGAGGGTTGCGATAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGG
* * *
18112851 TAGCATGCAGGGGGGATCGAG-TCGATCCCCGCCTTGCGCATTTTGCCTCTCCGATCGACTGAGC
65 TAGCATGCAGGGGGGACCGAGCT-GATCCCCGACTTGCGCATTATGCCTCTCCGATCG-CTGAGC
*
18112915 GCCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
18112946 GCATAGGGAGTTCATTCCATGCCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
* * * * *
18113010 AGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTGTGCATTATGCCTCTTCGGTCAGCTCAGCG
66 AGCATGCAG-GGGGGACCGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATC-GCTGAGCG
* * * *
18113075 CCTGAACACTCGTTTCATGGGTTGACTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
18113105 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTATAGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * *
18113168 TAGCATGCAGGGGGGACC-AGGCTGA-CCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGT
65 TAGCATGCAGGGGGGACCGA-GCTGATCCCCGACTTGCGCATTATGCCTCTCCGATC-GCTGAGC
*
18113231 GCCCGCATGCTCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
18113262 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
18113291 TACGGAGTTC
Statistics
Matches: 280, Mismatches: 55, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 80 0.29
158 70 0.25
159 122 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
AGCATGCAGGGGGGACCGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:18113292 original size:26 final size:26
Alignment explanation
Indices: 18113262--18113314 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18113252 GTTGGCTTAG
18113262 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18113288 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18113314 G
1 G
18113315 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18113487 original size:196 final size:195
Alignment explanation
Indices: 18113154--18113513 Score: 499
Period size: 196 Copynumber: 1.8 Consensus size: 195
18113144 TGAGGGTTAT
* * * * * *
18113154 AGCAGCAGGATCGATAGCATGCAGGGGGGACCAGGCTGACCCCGGCTTACGCATTCTGCCTCTCC
1 AGCAGCAGGATCAACAGCACGCAGGGGGGACCAGGCCGACCCCGACTTACGCATTCTACCTCTCC
* ** * * *
18113219 GACCGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGACTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATAT
18113284 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGCTTGCGATAGCAGGACC
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGCTTGCGATAGCAGGACC
* * *
18113349 AGCAGCAGGATCAACAGCACGCAGGGGGGTACCGGGCCGATCCTCGACTTACGTATTCTACCTCT
1 AGCAGCAGGATCAACAGCACGCAGGGGGG-ACCAGGCCGA-CCCCGACTTACGCATTCTACCTCT
* * * * *
18113414 CTGGCTGACTGAGTGCCTGCACACTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATCCCCA
64 CCGACCGACTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCA
18113478 -ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
128 TATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
18113514 AAACCAGACT
Statistics
Matches: 142, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
195 26 0.18
196 68 0.48
197 48 0.34
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (195 bp):
AGCAGCAGGATCAACAGCACGCAGGGGGGACCAGGCCGACCCCGACTTACGCATTCTACCTCTCC
GACCGACTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATAT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGCTTGCGATAGCAGGACC
Found at i:18113494 original size:26 final size:26
Alignment explanation
Indices: 18113458--18113510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18113448 GTTGACTTAG
18113458 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
18113484 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
18113510 G
1 G
18113511 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:18114388 original size:27 final size:26
Alignment explanation
Indices: 18114327--18114379 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18114317 TTGACTTTAG
*
18114327 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
18114353 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
18114379 G
1 G
18114380 ATCTTCGGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:18116842 original size:26 final size:26
Alignment explanation
Indices: 18116813--18116865 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18116803 GGTTGCTTAG
18116813 GCATACAGAGGTCATT-CCATGTCTAA
1 GCATACAGAGGTCATTCCCA-GTCTAA
* *
18116839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
18116865 G
1 G
18116866 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:18117658 original size:26 final size:26
Alignment explanation
Indices: 18117622--18117674 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18117612 GTTGGCTTAG
18117622 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18117648 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18117674 G
1 G
18117675 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18117936 original size:13 final size:13
Alignment explanation
Indices: 18117918--18117943 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18117908 TGCGCATTAT
18117918 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
18117931 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
18117944 CTGAGCCCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.46, G:0.31, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:18119151 original size:26 final size:26
Alignment explanation
Indices: 18119122--18119173 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18119112 TTGACTTAGT
18119122 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
18119148 CATACGGAGTTCATTCCCATTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
18119174 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:18119435 original size:159 final size:159
Alignment explanation
Indices: 18119147--18119650 Score: 450
Period size: 158 Copynumber: 3.2 Consensus size: 159
18119137 CCCAGTCTAA
*** * * * * *
18119147 GCATACGGAGTTCATTCCCAT-TCTAAG-ATTGGACTGGACCAAGGGTTGCGATAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTACGACAGCAGGATCGA
* * * *
18119210 CAGCATC-CA-GGAGGGACCGGGGCTATCCCCGACTTGCGCATTCTGCCTCTCTGACTGGCTGAG
65 TAGCA-CGCAGGGA-GGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAG
* * *
18119273 CGCCCGCACGCCCGTTTCATGGGATGGGTTAG
128 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * *
18119305 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTATGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTACGACAGCAGGATC-GA
* * * *
18119368 TAGCACGTAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTAC-GCCTCTCCGACTGGCTCAG
65 TAGCACGCAG-GGAGGACCGGGCCGATCCCCGACTTGCGCATT-CTGCCTCTCCGACTGGCTGAG
* * ** **
18119432 CGCCCGTACACTCGTTTTGTGGGTTAACTTAG
128 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
18119464 GCATACGGAGCTCATTCCCA-GTCTAAG-ATCGGACCGAACTGAGGGTTACGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTACGACAGCAGGATCGA
* * ** ** * * *
18119527 TAGCACGCAGGGAGGACCGGGTCGATTCTTGGGTTGCGCATTCTACCTCTCCGACTAGTTGAGCG
65 TAGCACGCAGGGAGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCG
18119592 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
18119622 GCATATGGAGTTGATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
18119651 TATGAAGTTC
Statistics
Matches: 268, Mismatches: 65, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 10 0.04
158 132 0.49
159 119 0.44
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTACGACAGCAGGATCGAT
AGCACGCAGGGAGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:18119659 original size:26 final size:26
Alignment explanation
Indices: 18119622--18119674 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18119612 GTTGGCTTAG
* *
18119622 GCATATGGAGTTGATTCC-ATGTCTAA
1 GCATATGAAGTTCATTCCTA-GTCTAA
18119648 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATATGAAGTTCATTCCTAGTCTAA
18119674 G
1 G
18119675 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCTAGTCTAA
Found at i:18120028 original size:25 final size:26
Alignment explanation
Indices: 18120000--18120054 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 26
18119990 TGGGTTGACT
*
18120000 TAAGCATACAGAGTTTA-TCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
18120025 TAAGCATAGAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
18120051 TAAG
1 TAAG
18120055 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:18128770 original size:158 final size:158
Alignment explanation
Indices: 18127996--18129437 Score: 778
Period size: 158 Copynumber: 9.2 Consensus size: 158
18127986 CCCAGTATAA
* * * * * *
18127996 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGGA-TCGAGGGTTGCGACAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAGCAGGATCGA
* * * * * * * *
18128059 TAGCATGGAAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCCTCTTCTACCGGCTGGGC
64 CAGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTG-CCTCTTCGATCGGCTGAGC
* * * * *
18128124 ACCCGCACGCCCATTTCGTGGG-TGTC-TAG
128 GCCCGTACACCCGTTTCGTGGGTTGACTTAG
* * ** * * * * *
18128153 GCATAGGGATTTCA-TCCATGTCTAAGCCCCA-TCCGGTC-GAGGG-TGTGG--GCAGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACTGAGGGTTGTGGCAGCA-GGATCGA
* * * * * *
18128212 CAGCACGCAAGGAGGGGACCGGGGCGATCCCCCTGGC-TGGGCATTATGCCTCTTCGATTGGCTC
64 CAGCACGCAA-G-GGGGATCGGGCCGAT--CCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTG
* *
18128276 AGCACCCG--CACGC-TCTT--TGGGTTGACTTATG
125 AGCGCCCGTACACCCGT-TTCGTGGGTTGACTTA-G
* * * * ** *
18128307 CCATACAGAGTTCATTCTCA-GTCTAAGATCGGATCAGATCTGAGGGTTACGACCAGCAGG-TCG
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCAGA-CTGAGGGTTGTG-GCAGCAGGATCG
* * * * * *
18128370 ACAGCACGC-AGGGGGACCGAGCTGATCCC-GGCTTGCCGCATTCTACCTC-TCTGACCAGCTGA
63 ACAGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTG-CGCATTCTGCCTCTTC-GATCGGCTGA
** *
18128432 GCGCCCGTATGCCCGTTTCAT-GG-TG-CTTAG
126 GCGCCCGTACACCCGTTTCGTGGGTTGACTTAG
* ** * * * * * * *
18128462 GCATAGGGAGTTCATTCC-TGTCT-AGCCCCA-ATCGGATCGGAGGGTTGTGGTAACGGGATCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGA-CTGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * ** ** * *
18128524 CAGCACACAGAGGGGGACCGAGCCAATCCCCGGCTTACG-ATTATGCCTCTTTGGCCAACTCAGT
64 CAGCACGCA-AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
** * * * *
18128588 GCTTGCACGCTCGTTTCGTGGGTTGACTTAT
128 GCCCGTACACCCGTTTCGTGGGTTGACTTAG
* * *
18128619 GCATACAGAGTTCATTTCCA-GTCTAAGATCAGACCGGACTGATGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGAC
** * * * *
18128683 AGCACGCAAGGGGGATAAGGCCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGTCAGCTGAGCGC
65 AGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGC
* * * *
18128748 CTGTACACCCATTTCGTTGGTTGGCTTAG
130 CCGTACACCCGTTTCGTGGGTTGACTTAG
* * ** * * * * *
18128777 GCATAGGGAGTTCATTCGATGTCTAAGCCCCAG-TCAGA-TCGAGGGTTATGGTAGCAGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACT-GAGGGTTGTGGCAGCAGGATCGA
* * * * * *
18128840 TAGCACGTCGA-GGGGATCGGGTCGATCCTTGGCTTGTGCATTATGCCTCTTCGATCGGCCTCG-
64 CAGCACG-CAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGG-CT-GA
* *
18128903 GTG-CC-TACATGCTCGTTTCGTGGGTTGACTTAG
126 GCGCCCGTACA--CCCGTTTCGTGGGTTGACTTAG
* * * ** * *
18128936 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGGTTGCAGCAGTAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACTGA-GGGTTGTGGCAGCAGGATCGA
* * *
18129000 CAGCACGTAA-GGGGATCGGGCCGAT-CCTCGGCTTACGTATTCTGCCTC-TCTGATCGGCTGAG
64 CAGCACGCAAGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTTC-GATCGGCTGAG
* * * * *
18129062 CACCCGCACGCCTGTTTCGTGGGTTGGCTTAG
127 CGCCCGTACACCCGTTTCGTGGGTTGACTTAG
* ** *
18129094 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGA-TCGATGGTTGTGGCAGC-GAGATCG
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACCAGACT-GAGGGTTGTGGCAGCAG-GATCG
** * * *** * * * * * *
18129156 GTAGCATGTAGAGGCAAATTGGGCTGATCCCCGGCTTGCGCATTTTGCCTCTTCGGTCGGCTCAG
63 ACAGCACGCA-AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAG
* * * * * *
18129221 TGCCCGCACGCTCGTTTCATGGGTTGACTTAT
127 CGCCCGTACACCCGTTTCGTGGGTTGACTTAG
* **
18129253 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGTTGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
18129317 AGCACGC-AGGTGGGATTGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG
65 AGCACGCAAGG-GGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCG
*
18129381 CCCGTAC-CCTCGTTTCGTGGGTTGGCTTAG
129 CCCGTACACC-CGTTTCGTGGGTTGACTTAG
*
18129411 GCATACGGAGTTCCTTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18129438 CATACGGAGT
Statistics
Matches: 966, Mismatches: 243, Indels: 151
0.71 0.18 0.11
Matches are distributed among these distances:
151 4 0.00
152 11 0.01
153 48 0.05
154 58 0.06
155 111 0.11
156 47 0.05
157 107 0.11
158 321 0.33
159 224 0.23
160 32 0.03
161 3 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCC
CGTACACCCGTTTCGTGGGTTGACTTAG
Found at i:18128946 original size:317 final size:316
Alignment explanation
Indices: 18128003--18129438 Score: 1304
Period size: 317 Copynumber: 4.6 Consensus size: 316
18127993 TAAGCATATG
* * * * * *
18128003 GAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGACAGCAAGATCGATAGCATGG
1 GAGTTCATTTCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * *
18128067 AAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCCTCTTCTACCGGCTGGGCACCCGCAC
65 AAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTG-CCTTTTCGACCGGCTGAGCGCCCGTAC
* * * * * *
18128132 GCCCATTTCG-TGGGTGTC-TAGGCATAGGGATTTCA-TCCATGTCTAAGCCCCA-TCCGGTCGA
129 GCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGA
*
18128193 GGG-TGTGG--GCAGGGACCGGCAGCACG-CAAGGAGGGGACCGGGGCGATCCCCCTGGC-TGGG
194 GGGTTGTGGTAGCA-GGACCGGCAGCACGTC-A-GAGGGGACC-GGGCGAT-CCCC-GGCTTGCG
* ** *
18128253 CATTATGCCTCTTCGATTGGCTCAGCACCCGCACGCTC--TT--TGGGTTGACTTATGCCATACA
253 CATTATGCCTCTTCGATCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATACA
* * * *
18128314 GAGTTCA-TTCTCAGTCTAAGATCGGATCAGATCTGAGGGTTACGACCAGCAGG-TCGACAGCAC
1 GAGTTCATTTC-CAGTCTAAGATCGGACCGGA-CTGAGGGTTGCG-GCAGCAGGATCGACAGCAC
* * * * *
18128377 GC-AGGGGGACCGAGCTGATCCC-GGCTTGCCGCATTCTACC-TCTCTGACCAGCTGAGCGCCCG
63 GCAAGGGGGATCGGGCTGATCCCTGGCTTG-CGCATTCTGCCTTTTC-GACCGGCTGAGCGCCCG
* * * *
18128439 TATGCCCGTTTC-ATGG-T-GCTTAGGCATAGGGAGTTCATTCC-TGTCT-AGCCCCAATCGGAT
126 TACGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAT
* * * * * * *
18128499 CGGAGGGTTGTGGTAACGGGATCGGCAGCAC-ACAGAGGGGGACCGAGCCAATCCCCGGCTTACG
191 C-GAGGGTTGTGGTAGCAGGACCGGCAGCACGTCAGA-GGGGACCG-GGCGATCCCCGGCTTGCG
* ** ** ** *
18128563 -ATTATGCCTCTTTGGCCAACTCAGTGCTTGCACGCTCGTTTCGTGGGTTGACTTATGCATACA
253 CATTATGCCTCTTCGATCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* * *
18128626 GAGTTCATTTCCAGTCTAAGATCAGACCGGACTGATGGTTGTGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTTCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
** * * ** * * *
18128691 AGGGGGATAAGGCCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGTCAGCTGAGCGCCTGTACAC
66 AGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTTTTCGACCGGCTGAGCGCCCGTACGC
* *
18128756 CCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGTCAGATCGAGG
131 CCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGG
* * * ** *
18128821 GTTATGGTAGCAGGACCGGTAGCACGTC-GAGGGGATCGGGTCGATCCTTGGCTTGTGCATTATG
196 GTTGTGGTAGCAGGACCGGCAGCACGTCAGAGGGGACCGGG-CGATCCCCGGCTTGCGCATTATG
* ** *
18128885 CCTCTTCGATCGGCCTCGGTGCCTACATGCTCGTTTCGTGGGTTGACTTAGGCATACA
260 CCTCTTCGATCGG-CTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* * * * * * *
18128943 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGGTTGCAGCAGTAAGATCGACAGCACGT
1 GAGTTCATTTCCAGTCTAAGATCGGACCGGACTGA-GGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * * *
18129008 AA-GGGGATCGGGCCGAT-CCTCGGCTTACGTATTCTGCC-TCTCTGATCGGCTGAGCACCCGCA
65 AAGGGGGATCGGGCTGATCCCT-GGCTTGCGCATTCTGCCTTTTC-GACCGGCTGAGCGCCCGTA
* * * *
18129070 CGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCG
128 CGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCG
* * * * * ** **
18129135 ATGGTTGTGGCAGC-GAGATCGGTAGCATGT-AGAGGCAAATTGGGCTGATCCCCGGCTTGCGCA
193 AGGGTTGTGGTAGCAG-GACCGGCAGCACGTCAGAGG-GGACCGGGC-GATCCCCGGCTTGCGCA
* * * * *
18129198 TTTTGCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACG
255 TTATGCCTCTTCGATCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* * **
18129260 GAGTTCA-TTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGTTGGATCGACAGCACGC
1 GAGTTCATTTCC-AGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * *
18129324 -AGGTGGGATTGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGTAC
65 AAGG-GGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTTTTCGACCGGCTGAGCGCCCGTAC
* * *
18129388 -CCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGTCTAAGC
129 GCC-CGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18129439 ATACGGAGTT
Statistics
Matches: 913, Mismatches: 163, Indels: 92
0.78 0.14 0.08
Matches are distributed among these distances:
308 8 0.01
309 59 0.06
310 59 0.06
311 92 0.10
312 108 0.12
313 35 0.04
314 2 0.00
315 42 0.05
316 82 0.09
317 363 0.40
318 63 0.07
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (316 bp):
GAGTTCATTTCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
AGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTTTTCGACCGGCTGAGCGCCCGTACGC
CCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGG
GTTGTGGTAGCAGGACCGGCAGCACGTCAGAGGGGACCGGGCGATCCCCGGCTTGCGCATTATGC
CTCTTCGATCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
Found at i:18129278 original size:634 final size:620
Alignment explanation
Indices: 18127996--18129438 Score: 1562
Period size: 634 Copynumber: 2.3 Consensus size: 620
18127986 CCCAGTATAA
* * * * * *
18127996 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGACAGCAAGATCGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGCAGCAGGATCGAC
* * ** * * *
18128060 AGCATGGAAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCCTCTTCTACCGGCTGGGCA
64 AGCACGCAAGGGGGATAGGGCTGATCCCTGGCTTGCGCATTCTG-CCTCTTCGACCGGCTGAGCG
* * * * *
18128125 CCCGCACGCCCATTTCG-TGGGTGTC-TAGGCATAGGGATTTCA-TCCATGTCTAAGCCCCATCC
128 CCCGTAC-CCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCA
* *
18128187 GGTCGAGGGTGTGGGCAGGGACCGGCAGCACGCAAGGAGGGGACCGGGGCGATCCCCCTGGCTGG
192 GATCGAGGGTATGGGCAGGGACCGGCAGCACGC-A-GAGGGGACCGGGGCGAT-CCCCTGGCTGG
* *
18128252 GCATTATGCCTCTTCGATTGGCTCAGCACCCGCACGCTCTTTGGGTTGACTTATGCCATACAGAG
254 GCATTATGCCTCTTCGATCGGCTCAGCACCCACACGCTCTTTGGGTTGACTTATGCCATACAGAG
* * * * * *
18128317 TTCATTCTCAGTCTAAGATCGGATCAGATCTGAGGGTTACGACCAGCAGGTCGACAGCACGCAGG
319 TTCATTCCCAGTCTAAGATCGGACCAGATCCGAGGGTTACGACCAGAAGATCGACAGCACGCAAG
* * * * *
18128382 GGGACCGAGCTGATCCCGGCTTGCCGCATTCTACCTCTCTGACCAGCTGAGCGCCCGTATGCCCG
384 GGGACCGAGCCGATCCCGGCTTGACGCATTCTACCTCTCTGACCAGCTGAGCACCCGCACGCCCG
* *
18128447 TTTCATGGTGCTTAGGCATAGGGAGTTCATTCCTGTCTAGCCCCAATCGGATCGGAGGGTTGTGG
449 TTTCATGGTGCTTAGGCATAGGGAGTTCATTCCTGTCTAGCCCCAACCAGATCGGAGGGTTGTGG
* * *** *
18128512 TAACGGGATCGGCAGCACACAGAGGGGGACCGAGCCAATCCCCGGCTTACGATTATGCCTCTTTG
514 CAACGAGATCGGCAGCACACAGAGGCAAACCGAGCCAATCCCCGGCTTACGATTATGCCTCTTCG
** *
18128577 GCCAACTCAGTGCTTGCACGCTCGTTTCGTGGGTTGACTTAT
579 GCCAACTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAT
* *
18128619 GCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGACTGATGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * ** *
18128684 GCACGCAAGGGGGATAAGGCCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGTCAGCTGAGCGCC
65 GCACGCAAGGGGGATAGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
* *
18128749 TGTACACCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGTCAG
130 CGTAC-CCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-TCAG
* * * *
18128814 ATCGAGGGTTATGGTAGCA-GGACCGGTAGCACGTC-GAGGGGATCGGGTCGAT-CCTTGGCTTG
193 ATCGAGGG-TATGG--GCAGGGACCGGCAGCACG-CAGAGGGGACCGGGGCGATCCCCTGGC-TG
* * ** * * *
18128876 TGCATTATGCCTCTTCGATCGGCCTCGGTGCCTACATGCTCGTTTCGTGGGTTGACTTA-GGCAT
253 GGCATTATGCCTCTTCGATCGG-CTCAGCACCCACACGCTC--TT--TGGGTTGACTTATGCCAT
* *
18128940 ACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAGGGGTTGC-AGCAGTAAGATCGACAG
313 ACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCCGA-GGGTTACGACCAG-AAGATCGACAG
* * * * * * *
18129003 CACGTAAGGGGATCGGGCCGATCCTCGGCTT-ACGTATTCTGCCTCTCTGATCGGCTGAGCACCC
376 CACGCAAGGGGACCGAGCCGATCC-CGGCTTGACGCATTCTACCTCTCTGACCAGCTGAGCACCC
* * * *
18129067 GCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGA
440 GCACGCCCGTTTCAT-GG-T-GCTTAGGCATAGGGAGTTCATTCC-TGTCT-AGCCCCAACCAGA
* * * *** ** * ** *
18129132 TC-GATGGTTGTGGCAGCGAGATCGGTAGCATGTAGAGGCAAATTGGGCTGATCCCCGGCTTGCG
500 TCGGAGGGTTGTGGCAACGAGATCGGCAGCACACAGAGGCAAACCGAGCCAATCCCCGGCTTACG
* * **
18129196 CATTTTGCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAT
565 -ATTATGCCTCTTCGGCCAACTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAT
**
18129253 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGTTGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * *
18129318 GCACGC-AGGTGGGATTGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
65 GCACGCAAGG-GGGATAGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
* * * *
18129382 CCGTACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGTCTAAGC
129 CCGTACCC-CATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18129439 ATACGGAGTT
Statistics
Matches: 675, Mismatches: 117, Indels: 45
0.81 0.14 0.05
Matches are distributed among these distances:
622 27 0.04
623 94 0.14
624 25 0.04
625 38 0.06
626 37 0.05
627 4 0.01
628 22 0.03
629 112 0.17
630 20 0.03
631 1 0.00
632 24 0.04
633 59 0.09
634 212 0.31
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (620 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAAGGGGGATAGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
GTACCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCAGATC
GAGGGTATGGGCAGGGACCGGCAGCACGCAGAGGGGACCGGGGCGATCCCCTGGCTGGGCATTAT
GCCTCTTCGATCGGCTCAGCACCCACACGCTCTTTGGGTTGACTTATGCCATACAGAGTTCATTC
CCAGTCTAAGATCGGACCAGATCCGAGGGTTACGACCAGAAGATCGACAGCACGCAAGGGGACCG
AGCCGATCCCGGCTTGACGCATTCTACCTCTCTGACCAGCTGAGCACCCGCACGCCCGTTTCATG
GTGCTTAGGCATAGGGAGTTCATTCCTGTCTAGCCCCAACCAGATCGGAGGGTTGTGGCAACGAG
ATCGGCAGCACACAGAGGCAAACCGAGCCAATCCCCGGCTTACGATTATGCCTCTTCGGCCAACT
CAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAT
Found at i:18129447 original size:26 final size:26
Alignment explanation
Indices: 18129411--18129463 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18129401 GTTGGCTTAG
*
18129411 GCATACGGAGTTCCTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18129437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18129463 G
1 G
18129464 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18131990 original size:159 final size:157
Alignment explanation
Indices: 18131788--18132370 Score: 440
Period size: 159 Copynumber: 3.6 Consensus size: 157
18131778 GGTGGTCCCC
* * * * *
18131788 GACTTACGGATTCTGCCTCTCCGGA-TGGCTGAGCGCCCTCACACCCATTTTGTGGGTTGGCTTA
1 GACTTACGCATTCTACCTCTCC-GACTGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTA
* *
18131852 AGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGATGGTTGTGGCAGCGGGACCGAC
65 AGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCGGGACCGAC
* * *
18131917 AGCACGCAGAAGGGGATTGATTTGATCCTT
130 AGCACGCAGAGGGGGATCGA-TCGATCC-T
* * * * * * *
18131947 GACTTACGCATTCTACCTCTCCGACTGGCTAAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
1 GACTTACGCATTCTACCTCTCCGACTGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAA
* ** * * * *
18132012 GCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTAATTCCCAG-TCTAAGATTGAACCGG
66 GCATACGGAGTTCAT-TCCATGTCTAAGC---C----CCAA---CCAGACCGAAGGTTG---TGG
* * * * *
18132075 -ATCGAGGGATACGACAGCACGTAG-GGGGGACCGGGTCGATCCCT
117 CA--GCGGGA-CCGACAGCACGCAGAGGGGGATC-GATCGAT-CCT
* * * * * *
18132119 GGCTTGCGCATTCTACCTCTCTGACTGGTTGAGCACCTGCACACCCATTTCGTTGGTTGGCTTAA
1 GACTTACGCATTCTACCTCTCCGACTGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAA
* * *
18132184 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACC-AGC
66 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCGGGACCGA-C
* *
18132248 AGCACGCAGAGGGGGATCGGACCGATCCC
130 AGCACGCAGAGGGGGATC-GATCGATCCT
* * * * * ****
18132277 CAGCTTACGCATTCTGCCTCTTCGACTGGTTGAGCACCCGTATGTTCATTTCGTGGGTTGGCTTA
1 GA-CTTACGCATTCTACCTCTCCGACTGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTA
* *
18132342 GGCATACAGAGTTCATTCCATGTCTAAGC
65 AGCATACGGAGTTCATTCCATGTCTAAGC
18132371 ATACGTCGGA
Statistics
Matches: 325, Mismatches: 73, Indels: 52
0.72 0.16 0.12
Matches are distributed among these distances:
157 1 0.00
158 14 0.04
159 169 0.52
160 5 0.02
161 1 0.00
162 5 0.02
163 6 0.02
165 1 0.00
166 2 0.01
168 6 0.02
169 5 0.02
170 1 0.00
171 5 0.02
172 89 0.27
173 15 0.05
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (157 bp):
GACTTACGCATTCTACCTCTCCGACTGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAA
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCGGGACCGACA
GCACGCAGAGGGGGATCGATCGATCCT
Found at i:18132042 original size:26 final size:26
Alignment explanation
Indices: 18132012--18132064 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18132002 GTTGACTTAG
*
18132012 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
*
18132038 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
18132064 G
1 G
18132065 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:18132286 original size:331 final size:337
Alignment explanation
Indices: 18131636--18132375 Score: 887
Period size: 331 Copynumber: 2.2 Consensus size: 337
18131626 CGACCGACTG
18131636 AGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * *
18131701 TGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGATAGCAGGATCGGTAGCACA
66 CGAAGTTAATTCCCAGTCTAAGATCAGACCGGATCGA-GG-TGCGATAGCA-GATC-G-AGCACA
* * * * *
18131766 CAGAGGGGATCGGGTGGTCCCCGACTTACGGATTCTGCCTCTCCGGATGGCTGAGCGCCCTCACA
126 CAGAGGGGACCGGGTGATCCCCGACTTACGCATTCTACCTCTCCGGATGGCTGAGCGACCTCACA
* *
18131831 CCCATTTTGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAT
191 CCCATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAG
* ** **
18131896 GGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATTGATTTGATCCTTGACTTACGCATTCT
256 GGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATGGATCCGATCCCAGACTTACGCATTCT
18131961 ACCTCTCCGACTGGCTA
321 ACCTCTCCGACTGGCTA
* * *
18131978 AGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * ** *
18132043 CGGAGTTAATTCCCAGTCTAAGAT-TGAACCGGATCGA-G-G-GATA-C-GA-C-AGCACGTAGG
66 CGAAGTTAATTCCCAGTCTAAGATCAG-ACCGGATCGAGGTGCGATAGCAGATCGAGCACACAGA
* * * * *
18132100 GGGGACCGGGTCGATCCCTGGCTTGCGCATTCTACCTCT-CTGACTGGTTGAGC-ACCTGCACAC
130 GGGGACCGGGT-GATCCCCGACTTACGCATTCTACCTCTCCGGA-TGGCTGAGCGACCT-CACAC
* *
18132163 CCATTTCGTTGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
192 CCATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGG
*
18132228 GTTGTGGCAGCGGGACC-AGCAGCACGCAGAGGGGGATCGGA-CCGATCCCCAG-CTTACGCATT
257 GTTGTGGCAGCGGGACCGA-CAGCACGCAGAAGGGGAT-GGATCCGAT-CCCAGACTTACGCATT
* * * *
18132290 CTGCCTCTTCGACTGGTTG
319 CTACCTCTCCGACTGGCTA
*** * * * *
18132309 AGCACCCGTATGTTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCAT
1 AGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCAT
18132373 ACG
65 ACG
18132376 TCGGAGCATC
Statistics
Matches: 345, Mismatches: 45, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
330 27 0.08
331 210 0.61
332 5 0.01
333 1 0.00
334 2 0.01
336 1 0.00
337 4 0.01
338 1 0.00
340 1 0.00
341 1 0.00
342 92 0.27
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (337 bp):
AGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
CGAAGTTAATTCCCAGTCTAAGATCAGACCGGATCGAGGTGCGATAGCAGATCGAGCACACAGAG
GGGACCGGGTGATCCCCGACTTACGCATTCTACCTCTCCGGATGGCTGAGCGACCTCACACCCAT
TTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTG
TGGCAGCGGGACCGACAGCACGCAGAAGGGGATGGATCCGATCCCAGACTTACGCATTCTACCTC
TCCGACTGGCTA
Found at i:18133339 original size:26 final size:26
Alignment explanation
Indices: 18133302--18133354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18133292 GTTGGCTTAG
* *
18133302 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
18133328 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
18133354 G
1 G
18133355 ATCAGATCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:18133547 original size:26 final size:26
Alignment explanation
Indices: 18133511--18133562 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18133501 GTTGACTTAG
*
18133511 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
18133537 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18133563 TATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18133894 original size:171 final size:171
Alignment explanation
Indices: 18133585--18133895 Score: 405
Period size: 172 Copynumber: 1.8 Consensus size: 171
18133575 CCAAGGGTTG
* ** *
18133585 CGACAGTAGGATCGATAGCACGCAGGGGGGGATCGGGCTGATCTTCGGCTTACGCATTTCTGCCT
1 CGACAGTAGGATCGACAGCACGCAGAAGGGGATCGGGCTGATC-TCGGCTTACGCATTTATGCCT
* * * *
18133650 CTCCGGTCGACTGAGCGCCCGCACGCTCATGTCGTGGGTTGCTTAGGCATACGAAGTTCATTCCC
65 CTCCGATCGACTGAGCGCCCGCACGCTCATGTCATGGGTTACTTAGGCATACGAAGTTCATCCCC
18133715 ATGTCTAAGCCCTAGTCGGACAGAAGGTTGTGGCAGCAGGAT
130 ATGTCTAAGCCCTAGTCGGACAGAAGGTTGTGGCAGCAGGAT
* * *
18133757 CGACAGT-GGTATCGACAGTACGCAGAAGGGGATAGGGGCTGATC-CGCGCTTGCGCA-TTATGC
1 CGACAGTAGG-ATCGACAGCACGCAGAAGGGGAT-CGGGCTGATCTCG-GCTTACGCATTTATGC
* * * * *
18133819 CTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATC
63 CTCTCCGATCGACTGAGCGCCCGCACGCTCATGTCATGGGTT-ACTTAGGCATACGAAGTTCATC
18133884 CCCA-GTCTAAGC
127 CCCATGTCTAAGC
18133896 ATACAGAGTT
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
171 53 0.45
172 57 0.48
173 9 0.08
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (171 bp):
CGACAGTAGGATCGACAGCACGCAGAAGGGGATCGGGCTGATCTCGGCTTACGCATTTATGCCTC
TCCGATCGACTGAGCGCCCGCACGCTCATGTCATGGGTTACTTAGGCATACGAAGTTCATCCCCA
TGTCTAAGCCCTAGTCGGACAGAAGGTTGTGGCAGCAGGAT
Found at i:18133898 original size:26 final size:26
Alignment explanation
Indices: 18133868--18133920 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18133858 GTTAACTTAG
*
18133868 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18133894 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18133920 G
1 G
18133921 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18134757 original size:26 final size:26
Alignment explanation
Indices: 18134718--18134770 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18134708 GTTGGCTTAG
18134718 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
* *
18134744 GCATACGGATTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
18134770 G
1 G
18134771 ATGTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:18141314 original size:26 final size:26
Alignment explanation
Indices: 18141265--18141317 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18141255 GTTGGCTTAG
*
18141265 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
18141291 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
18141317 G
1 G
18141318 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:18141681 original size:26 final size:26
Alignment explanation
Indices: 18141645--18141697 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18141635 GTTGACTTAG
*
18141645 GCATATGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
18141671 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
18141697 G
1 G
18141698 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:18142182 original size:26 final size:26
Alignment explanation
Indices: 18142146--18142198 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18142136 GTTGGCTTAG
*
18142146 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18142172 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18142198 G
1 G
18142199 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18142906 original size:26 final size:26
Alignment explanation
Indices: 18142869--18142921 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18142859 GTTGACTTAT
*
18142869 GCATACGAAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18142895 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
18142921 G
1 G
18142922 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18143397 original size:159 final size:158
Alignment explanation
Indices: 18142895--18143387 Score: 494
Period size: 159 Copynumber: 3.1 Consensus size: 158
18142885 CCCAGTTTAA
* *
18142895 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGACA
* * *
18142960 GCACGCA-GGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
66 GCACGCAGGGGGGGA-TGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
* *
18143024 CCGCACGC-CTGTTTCATGGGTTGGCTTAG
130 CCGTACGCTC-GTTTCGTGGGTTGGCTTAG
** ** * * * * *
18143053 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTG-TGACAGCGGGACCG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCAG-TAGCAGGATCG
* * * * ** * * * *
18143115 ATAGCATGCAGAGGGGGATCAGGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTCAG
63 ACAGCACGCAGGGGGGGATGA-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAG
* * * * *
18143180 CGTCCGCT-CGTTCCTTTCGTGGGTTGACTTAC
127 CGCCCG-TACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
18143212 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCAAGGGTTGCAGTAGCAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGACA
* * * * *
18143277 GCACGCAGGGGGGGAGTGAGCCGATCACCGACTTGCACATTCTGCATCTCCGATCGACTGAGTGC
66 GCACGCAGGGGGGGA-TGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
*
18143342 CCGTACGCTCGTTTTGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
18143371 GCATACAGAGTTCATTC
1 GCATACAGAGTTCATTC
18143388 TATGTCTAAG
Statistics
Matches: 259, Mismatches: 64, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 54 0.21
159 194 0.75
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGACA
GCACGCAGGGGGGGATGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18144675 original size:171 final size:171
Alignment explanation
Indices: 18144363--18144675 Score: 378
Period size: 171 Copynumber: 1.8 Consensus size: 171
18144353 CGCAGAGGGG
** *
18144363 GACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACCGGTTCAGCACCCGCACGCTTGTT
1 GACCGAGCCGATCCCCGACTTAAGCATTATGCCTCTCCGACCGGTTCAGCACCCGCACGCTTGTT
** * * *
18144428 TCATGGGTTGACTTAGGCATATGAAGTTCATTCACAGTCTAAGATCAGACCGAACCAAGGGTTGC
66 TCATGGGTTGACTTACACATACGAAGTTCATTCACAGTCTAAGACCAGACAGAACCAAGGGTTGC
*
18144493 GATAGCAGGACCAGCAGCAAGAATGATAGCAGACAAGGTGA
131 GATAACAGGACCAGCAGCAAGAATGATAGCAGACAAGGTGA
* * * * * * *
18144534 GACCGGGCCGATCCCCGACTTAATCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGTACGCTTGTT
1 GACCGAGCCGATCCCCGACTTAAGCATTATGCCTCTCCGACCGGTTCAGCACCCGCACGCTTGTT
* * * * * *
18144599 TCATGGGTTGGCTTACACATACGGAGTTCATTCTA-TGTCTAAGCCCCAGTCAG-ACCGAGGGTT
66 TCATGGGTTGACTTACACATACGAAGTTCATTC-ACAGTCTAAG-ACCAGACAGAACCAAGGGTT
* *
18144662 GTGGTAACAGGACC
129 GCGATAACAGGACC
18144676 GAAAGCGGGA
Statistics
Matches: 116, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
171 110 0.95
172 6 0.05
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (171 bp):
GACCGAGCCGATCCCCGACTTAAGCATTATGCCTCTCCGACCGGTTCAGCACCCGCACGCTTGTT
TCATGGGTTGACTTACACATACGAAGTTCATTCACAGTCTAAGACCAGACAGAACCAAGGGTTGC
GATAACAGGACCAGCAGCAAGAATGATAGCAGACAAGGTGA
Found at i:18144815 original size:26 final size:26
Alignment explanation
Indices: 18144785--18144837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18144775 GTTGACTTAG
18144785 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18144811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18144837 G
1 G
18144838 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18145265 original size:158 final size:156
Alignment explanation
Indices: 18144811--18145312 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 156
18144801 CCCAGTCTAA
*
18144811 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACAGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACAGAGGGTTGTGG-AG-AGGATCGACA
* * *
18144876 GCACACAGGGGGGATC-GAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
64 GCACGCAGGGGGGACCAG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
**
18144940 CCGCACGC-CTGTTTCGTCAGTTGGCTTAG
128 CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * * * * * *
18144969 GCATAGGGAGTTCA-TACCATGTCTAAGCCCTAGCT-GGACTGAAGGTTGTGGCGATGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGATCAGACAGAGGGTTGTGGAGA--GGATCGA
* * * * * ** *
18145032 CAGCAAGCAGAGGGGGACCAGGCCGATCCCCGACTTGGGCATTATGCCTCTTTGACCGGCTCAGC
62 CAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * **
18145097 GCCCGTACGCTCGTTTCGTGGGTTGACTTTT
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
18145128 GCATACGGAGTTCATTCCCAGTCTAAGGTTAGATCAAACCGAGGGTTGAGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACAGAGGGTTGTGG-AG-AGGATCGACA
* * * *
18145193 GCACGTAGGGGGGACCAGGTTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
64 GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
18145258 CGCACGCTCATTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
18145286 GCATACGGAGTTCATTCCCTA-TCTAAG
1 GCATACGGAGTTCATTCCC-AGTCTAAG
18145313 CATATGGAGT
Statistics
Matches: 272, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 144 0.53
159 114 0.42
160 7 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACAGAGGGTTGTGGAGAGGATCGACAGC
ACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18145316 original size:26 final size:26
Alignment explanation
Indices: 18145286--18145338 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18145276 GTTGGCTTAG
18145286 GCATACGGAGTTCATTCCCTA-TCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
18145312 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18145338 G
1 G
18145339 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18146026 original size:26 final size:26
Alignment explanation
Indices: 18145996--18146048 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18145986 GTTGACGTAG
*
18145996 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
18146022 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
18146048 G
1 G
18146049 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:18146375 original size:158 final size:158
Alignment explanation
Indices: 18146022--18146386 Score: 414
Period size: 158 Copynumber: 2.3 Consensus size: 158
18146012 CCCAGTCTAA
* * * * *
18146022 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCAGACAGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGACCGATA
* * * * *
18146087 GCACGTAGGGAGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGACTGAGCACC
66 GCACGTAGGGAGGATCGAGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTCAGCACC
* * *
18146152 CGTAAGCCCGTTTCATGGGTTGGCTTAG
131 CGCAAGCCCGATTCATGGGTTGACTTAG
* * ** * * * * *
18146180 GCATAGGGAGTTCATT-CCATGTCCAAGCCCCAG-CCAGACCGAAGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAGCAGGACCGA
* * *
18146243 TAGCAC-TCAGAGGGGGATCGAGTTGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGCTCAG
64 TAGCACGT-AG-GGAGGATCGAGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTCAG
* * *
18146307 CACCCGCACGCTC-ATTCGTGGGTTGACTTAG
127 CACCCGCAAGCCCGATTCATGGGTTGACTTAG
18146338 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
18146387 AGTAGCAAGA
Statistics
Matches: 168, Mismatches: 33, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
157 7 0.04
158 101 0.60
159 60 0.36
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGACCGATA
GCACGTAGGGAGGATCGAGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTCAGCACC
CGCAAGCCCGATTCATGGGTTGACTTAG
Found at i:18146743 original size:26 final size:26
Alignment explanation
Indices: 18146707--18146759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18146697 GTTGACTTAC
18146707 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
18146733 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18146759 G
1 G
18146760 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18147028 original size:159 final size:157
Alignment explanation
Indices: 18146740--18147233 Score: 416
Period size: 159 Copynumber: 3.1 Consensus size: 157
18146730 TAAGCATATG
* * * * **
18146740 GAGTTCATT-CTCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGTAGCAGGA-TCGGTAGCAT
1 GAGTTCATTCCT-AGTCTAAGACCCA-ACCAGACCGAGGGTTGTGGCAGCAGGACT-GACAGCA-
* *** * * * * **
18146802 GCAG-GGG-GGACCAGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGATTGGTTGAGTGCCCG
62 -CAGAGGGAGGACCAGGCCGATCCCCAACTTGCGCATTTTACCTCTCTGACCGGTTGAGTGCCCG
* * *
18146865 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
126 CACGCTCATTTCATGGGTTGGCTTAGGCATA-A
* ** *
18146898 GAGTTCATTCCGTA-TCTAA-ACCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACTGGCAGCACG
1 GAGTTCATTCC-TAGTCTAAGA-CCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCA--
* * ** * *
18146961 CAGAGGG-GGACCGGGCCGATCTCCGGCTTGTGCATTTTACCTCTTTGACCGGCTT-AGTGCCCG
62 CAGAGGGAGGACCAGGCCGATCCCCAACTTGCGCATTTTACCTCTCTGACCGG-TTGAGTGCCCG
* *
18147024 CACGCTCATTTCGTGGGTTGACTT-GTGCATACA
126 CACGCTCATTTCATGGGTTGGCTTAG-GCATA-A
* * * * * *
18147057 AAGTTCATTCCTAGTCTAAGACCGAACCAGACTGAGGGTTGTGGCAGCAGGATTGATAGCACATA
1 GAGTTCATTCCTAGTCTAAGACCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCACAGA
* * *
18147122 GGGAGGACTAGGCCGATCCCCAACTTGCGCATTTTGCCTCTCTGACCGGTTGAGCGCCCGCACGC
66 GGGAGGACCAGGCCGATCCCCAACTTGCGCATTTTACCTCTCTGACCGGTTGAGTGCCCGCACGC
*
18147187 TCATTTCATGGGTTGGCTTAGGCATAC
131 TCATTTCATGGGTTGGCTTAGGCATAA
18147214 GAGTTCATTCC-ATGTCTAAG
1 GAGTTCATTCCTA-GTCTAAG
18147234 CTTACGGAGT
Statistics
Matches: 274, Mismatches: 48, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 26 0.09
158 121 0.44
159 122 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GAGTTCATTCCTAGTCTAAGACCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCACAGA
GGGAGGACCAGGCCGATCCCCAACTTGCGCATTTTACCTCTCTGACCGGTTGAGTGCCCGCACGC
TCATTTCATGGGTTGGCTTAGGCATAA
Found at i:18147201 original size:158 final size:158
Alignment explanation
Indices: 18146806--18147233 Score: 438
Period size: 159 Copynumber: 2.7 Consensus size: 158
18146796 TAGCATGCAG
* *** * * * ** *
18146806 GGGGGACCAGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGATTGGTTGAGTGCCCGCACGCC
1 GGGGGACCAGGCCGATCCCCAACTTGCGCATTTTGCCTCTCTGACCGGTTGAGTGCCCGCACGCT
* * * **
18146871 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTA-TCTAA-ACCCCAGCTGGACCGAG
66 CATTTCATGGGTTGGCTTAGGCATA-CGAGTTCATTCC-TAGTCTAAGACCCCAACCAGACCGAG
*
18146934 GGTTGTGGCAGCAGGACTGGCAGCACGCAGA
129 GGTTGTGGCAGCAGGACTGACAGCAC-CAGA
* * ** * * *
18146965 GGGGGACCGGGCCGATCTCCGGCTTGTGCATTTTACCTCTTTGACCGGCTT-AGTGCCCGCACGC
1 GGGGGACCAGGCCGATCCCCAACTTGCGCATTTTGCCTCTCTGACCGG-TTGAGTGCCCGCACGC
* * * * *
18147029 TCATTTCGTGGGTTGACTT-GTGCATACAAAGTTCATTCCTAGTCTAAGA-CCGAACCAGACTGA
65 TCATTTCATGGGTTGGCTTAG-GCATAC-GAGTTCATTCCTAGTCTAAGACCCCAACCAGACCGA
* * *
18147092 GGGTTGTGGCAGCAGGATTGATAGCA-CATA
128 GGGTTGTGGCAGCAGGACTGACAGCACCAGA
* *
18147122 GGGAGGACTAGGCCGATCCCCAACTTGCGCATTTTGCCTCTCTGACCGGTTGAGCGCCCGCACGC
1 GGG-GGACCAGGCCGATCCCCAACTTGCGCATTTTGCCTCTCTGACCGGTTGAGTGCCCGCACGC
18147187 TCATTTCATGGGTTGGCTTAGGCATACGAGTTCATTCC-ATGTCTAAG
65 TCATTTCATGGGTTGGCTTAGGCATACGAGTTCATTCCTA-GTCTAAG
18147234 CTTACGGAGT
Statistics
Matches: 221, Mismatches: 39, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 25 0.11
158 75 0.34
159 117 0.53
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
GGGGGACCAGGCCGATCCCCAACTTGCGCATTTTGCCTCTCTGACCGGTTGAGTGCCCGCACGCT
CATTTCATGGGTTGGCTTAGGCATACGAGTTCATTCCTAGTCTAAGACCCCAACCAGACCGAGGG
TTGTGGCAGCAGGACTGACAGCACCAGA
Found at i:18147709 original size:26 final size:26
Alignment explanation
Indices: 18147673--18147728 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
18147663 TTTTTTCTAA
*
18147673 AAAAATTTTAAAAAATC-CTGAACCAC
1 AAAAACTTTAAAAAATCTC-GAACCAC
18147699 AAAAACTTTAAAAAATCTCGAACCAC
1 AAAAACTTTAAAAAATCTCGAACCAC
18147725 AAAA
1 AAAA
18147729 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.57, C:0.20, G:0.04, T:0.20
Consensus pattern (26 bp):
AAAAACTTTAAAAAATCTCGAACCAC
Found at i:18148795 original size:157 final size:157
Alignment explanation
Indices: 18148326--18148826 Score: 519
Period size: 159 Copynumber: 3.2 Consensus size: 157
18148316 CATAGTCTAA
* * ** * * *
18148326 GCATATGGAGTTCATTTCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATA
* * * * * *
18148391 GCATACAGGGGGGATCGAG-TCGATCCCCGCCTTACGCATTTTGCCTCTCCGATCGACTGAGCGC
66 GCATGCAGGGGGGACCGAGCT-GATCCCCGACTTACGCATTATGCCTCTCTGGT-GACTGAGCGC
* * * *
18148455 CCGCACGCCCGTTTCATTGGTTGGCTTAG
129 CCGCACACTCGTTTCATGGGTTGACTTAG
* * ** * * *
18148484 GCATAGGGAGTTCATT-CCATGCCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
18148547 CAGCATGCAGAGAGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCT-TCGGTCAGCTCAG
64 TAGCATGCAG-GGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCTCT-GGTGA-CTGAG
*
18148611 CGCCCGAACACTCGTTTCATGGGTTGACTTAG
126 CGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * *
18148643 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTATAGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGTGGCAGCAGGATCGAT
* * *
18148707 AGCATGCAGGGGGGACCGGGCTGA-CCCCGACTTACGCATTCTGCCTCTCTGGCTGACTGAGTGC
65 AGCATGCAGGGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCTCTGG-TGACTGAGCGC
*
18148771 CCGCACACTCGTTTCGTGGGTTGACTTAG
129 CCGCACACTCGTTTCATGGGTTGACTTAG
* *
18148800 GCATACGGAGTTCATCCCCAATCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
18148827 CATACGGAGT
Statistics
Matches: 279, Mismatches: 53, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 84 0.30
158 73 0.26
159 119 0.43
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATA
GCATGCAGGGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCTCTGGTGACTGAGCGCCC
GCACACTCGTTTCATGGGTTGACTTAG
Found at i:18149010 original size:183 final size:183
Alignment explanation
Indices: 18148643--18148994 Score: 463
Period size: 183 Copynumber: 1.9 Consensus size: 183
18148633 GTTGACTTAG
* * * *
18148643 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATAGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACAGCAGCAGGATCGACA
* ** * *
18148708 GCATGCAGGGGGGACCGGGCTGACCCCGACTTACGCATTCTGCCTCTCTGGCTGACTGAGTGCCC
66 GCACGCAGGGGGGACCGGGCTGACCCCGACTTACGCATTCTGCCTCTCCAGCCGACTGAGCGCCC
*
18148773 GCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
131 GCACACCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
* * * * *
18148826 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACAGCAGCAGGATCGACA
* * * * **
18148891 GCACGCAGGGGGGATCGGGCTGATCCCCGGCTT-TGCATTCTGCCTTTCCAGCCGGTTGAGCGCC
66 GCACGCAGGGGGGACCGGGCTGA-CCCCGACTTACGCATTCTGCCTCTCCAGCCGACTGAGCGCC
* * * *
18148955 CGCACGCCCGTTTCGTGTGTTGGCTTAGGCATAGGGAGTT
130 CGCACACCCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
18148995 GACTCCATGT
Statistics
Matches: 143, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
183 135 0.94
184 8 0.06
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (183 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCTGACCCCGACTTACGCATTCTGCCTCTCCAGCCGACTGAGCGCCC
GCACACCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
Found at i:18149188 original size:499 final size:498
Alignment explanation
Indices: 18148191--18149554 Score: 1349
Period size: 499 Copynumber: 2.7 Consensus size: 498
18148181 AGCAAGACCG
* * * * ** *
18148191 GCAGCGGGATCGATAGCACACAGAGGGGGACCGAGCTGATCCCTAGCTTGTGCATTATGCCTCTC
1 GCAGCAGGATCGATAGCACGCAG-GGGGGACCGAGCTGACCCCGA-CTTACGCATTCTGCCTCTC
* * * * **
18148256 TGGCT-AGTTGAGCGCCCGCACGCTCGTTGCGGGGGTTGACTTAGGCATACAGAGTTCATCCATA
64 TGGCTGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
* * * *
18148320 GTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATTGGACCGGA-TCGAGGGTTGCGGTAGCAGG
128 ATCTAAGCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGGCAGCAGG
* * * *
18148384 ATCGGTAGCATACAGGGGGGATCGAGTCGATCCCCGCCTTACGCATTTTGCCTCTCCGATCGACT
191 ATCGGCAGCACACAGGGGGGATCGAGTCGATCCCCGCCTTACGCATTCTGCCTCTCCGACCGACT
*
18148449 GAGCGCCCGCACGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCC
256 GAGCGCCCGCACGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCACTCCATGCCTAAGCCC
*
18148514 CAGCCAGATCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGAGGGACCGAGCCGATCCCCG
321 CAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGAGGGACCGAGCCGATCCCCG
** * * *
18148579 ACTTGCGCATTATGCCTCTTCGGTCAGCTCAGCGCCCGAACACTCGTTTCATGGGTTGACTTAGG
386 ACTTGCGCATTATGCAGCTTCGATCAGCTCAGCACCCGAACACTCATTTCATGGGTTGACTTAGG
* ** * *
18148644 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATA
451 CATACGAAGTTAATTCCCAGTCTAAGATCAGACCAAACCGAGGGTT-GA
* *
18148693 GCAGCAGGATCGATAGCATGCAGGGGGGACCGGGCTGACCCCGACTTACGCATTCTGCCTCTCTG
1 GCAGCAGGATCGATAGCACGCAGGGGGGACCGAGCTGACCCCGACTTACGCATTCTGCCTCTCTG
* *
18148758 GCTGACTGAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
66 GCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
** *
18148823 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCG
131 TAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCG
* * * * * **
18148888 GCAGCACGCAGGGGGGATCG-GGCTGATCCCCGGCTT-TGCATTCTGCCTTTCC-AGCCGGTTGA
195 GCAGCACACAGGGGGGATCGAGTC-GATCCCCGCCTTACGCATTCTGCCTCTCCGA-CCGACTGA
* * *
18148950 GCGCCCGCACGCCCGTTTC-GTGTGTTGGCTTAGGCATAGGGAGTTGACTCCATGTCTAAGCCCC
258 GCGCCCGCACGCCCGTTTCATTG-GTTGGCTTAGGCATAGGGAGTTCACTCCATGCCTAAGCCCC
** * *
18149014 AGCTGGACCGAGGGTTGTGGTC-GCGGGATCGGCAGCATGCAGAG-GTGGACC-AGGCCGATCCC
322 AGCCAGACCGAGGGTTGTGG-CAGCGGGACCGACAGCATGCAGAGAG-GGACCGA-GCCGATCCC
* * ** * * **
18149076 C-AGCTTGGGCATTTTGCAGCTTCGATTGGCTCAGCACTCGTACACTCATTTTGTGGGTTGACTT
384 CGA-CTTGCGCATTATGCAGCTTCGATCAGCTCAGCACCCGAACACTCATTTCATGGGTTGACTT
* * *
18149140 AGGCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGC
448 AGGCATACGAAGTTAATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGA
* * * * * * * *
18149191 GATAGCAGGATCGACAGCACGCA-GGGGGATCGAGCCGTTCCTCTG-CTTACGTATTCTGGCTCT
1 G-CAGCAGGATCGATAGCACGCAGGGGGGACCGAGCTG-ACC-CCGACTTACGCATTCTGCCTCT
* * * ** *
18149254 CTGG-TCGGCTGAGCACCCGCACGCTCGTTTCGTAGACT-AGCTTAGGCATACGGAGTTCAT-TC
63 CTGGCT-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATCCC
* *
18149316 CATCTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTATGGCCATA
126 CA-ATCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACTGAGGG-T-T-G-C---
* ** * * * * *
18149381 GGACCAGCTGCAGGATCGACAGCACGTAGGGGGAATCGGGTCGATCCCTGACTTGCGCATTCTGC
182 GG--CA---GCAGGATCGGCAGCACACAGGGGGGATCGAGTCGATCCCCGCCTTACGCATTCTGC
** * * * * * * * * *
18149446 CTCTCCGACCGGTTGAGCGCCCACACGCTCGTTTC-CTGGCTTGACATAGGCATACGAAGTTTAT
242 CTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCATTGG-TTGGCTTAGGCATAGGGAGTTCAC
* * * * *
18149510 TCCATGTCTAAGCCCTAGCCTGATC-ATGGGTTGTGGCAGCAGGAC
306 TCCATGCCTAAGCCCCAGCCAGACCGA-GGGTTGTGGCAGCGGGAC
18149555 TGGCAGCGGG
Statistics
Matches: 716, Mismatches: 111, Indels: 60
0.81 0.13 0.07
Matches are distributed among these distances:
498 23 0.03
499 352 0.49
500 158 0.22
501 21 0.03
502 21 0.03
503 1 0.00
506 2 0.00
508 2 0.00
511 39 0.05
512 96 0.13
513 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (498 bp):
GCAGCAGGATCGATAGCACGCAGGGGGGACCGAGCTGACCCCGACTTACGCATTCTGCCTCTCTG
GCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
TAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGG
CAGCACACAGGGGGGATCGAGTCGATCCCCGCCTTACGCATTCTGCCTCTCCGACCGACTGAGCG
CCCGCACGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCACTCCATGCCTAAGCCCCAGCC
AGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGAGGGACCGAGCCGATCCCCGACTTG
CGCATTATGCAGCTTCGATCAGCTCAGCACCCGAACACTCATTTCATGGGTTGACTTAGGCATAC
GAAGTTAATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGA
Found at i:18149696 original size:26 final size:26
Alignment explanation
Indices: 18149666--18149718 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18149656 GTTGACTTAG
*
18149666 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
18149692 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18149718 G
1 G
18149719 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18150062 original size:159 final size:158
Alignment explanation
Indices: 18149692--18150184 Score: 485
Period size: 158 Copynumber: 3.1 Consensus size: 158
18149682 CCTAGTCTAA
* * **
18149692 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACCGAGGGTTACGGTAGCAAGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGATCGAGGGTTACGGCAGC-AGATCGAC
* * * * *
18149756 AACACGCA-AGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCA
64 AACACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTTTCCGACCGACTGAGCG
* * *
18149820 CCCGCACACCCATTTCATGGGTTGGCGTAG
129 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * ** ** *
18149850 GCATAGGGAGTTCATT-CAATGTCTAAGCCCCA-ACCAAATCGAGGGTTGTGGCAGCGAGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTACGGCAGC-AGATCGA
* * * * * *
18149913 CAGCATGCAGAGAGGGACCGAGCCGATCCCCTGCTTACGCATTATGCCTTTCCGACCGGCTCAGC
63 CAACACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTTTCCGACCGACTGAGC
** * *
18149978 GCCCGCACGCTCATTTTTTGGGTTGACTTAT
128 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
18150009 GCATACGGAGTTAATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCA-GATCGACA
* * * *
18150074 ACACACAG-GGGGGACTGAGCCGATCCCCGGCTTACGTATTTTGCCTCTT-CGACCGACTGAGCG
65 ACACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCT-TTCCGACCGACTGAGCG
* * ** *
18150137 CCTGCATGCTTGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCATGGGTTGGCTTAG
*
18150167 GCATACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
18150185 ATGCCTAAGC
Statistics
Matches: 262, Mismatches: 65, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 135 0.52
159 123 0.47
160 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCAGATCGACAA
CACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTTTCCGACCGACTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:18151066 original size:26 final size:26
Alignment explanation
Indices: 18151036--18151091 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
18151026 TGGGTTGGCT
*
18151036 TAAGCATACGA-ATTTCATTCC-ATGTC
1 TAAGCATAC-ATAGTTCATTCCTA-GTC
18151062 TAAGCATACATAGTTCATTCCTAGTC
1 TAAGCATACATAGTTCATTCCTAGTC
18151088 TAAG
1 TAAG
18151092 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 1 0.04
26 25 0.93
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34
Consensus pattern (26 bp):
TAAGCATACATAGTTCATTCCTAGTC
Found at i:18151796 original size:26 final size:26
Alignment explanation
Indices: 18151744--18151796 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18151734 GTTGACTTAG
* *
18151744 GCATACGGATTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAATATAA
* *
18151770 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATATAA
18151796 G
1 G
18151797 ATCATATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATATAA
Found at i:18152647 original size:26 final size:26
Alignment explanation
Indices: 18152607--18152662 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
18152597 TGGGTTGACT
18152607 TAAGCATACGAAGTTCA-TCCCTAGTC
1 TAAGCATACGAAGTTCATTCCC-AGTC
*
18152633 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
18152659 TAAG
1 TAAG
18152663 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:18153162 original size:26 final size:26
Alignment explanation
Indices: 18153112--18153164 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18153102 GTTGGCTTAG
*
18153112 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
18153138 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
18153164 G
1 G
18153165 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:18153861 original size:26 final size:26
Alignment explanation
Indices: 18153831--18153886 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18153821 TGGGTTGATT
*
18153831 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCAGACGGAGTTCATCCCCAGTC
* *
18153857 TAAGCAGATGGAGTTCATTCCCAGTC
1 TAAGCAGACGGAGTTCATCCCCAGTC
18153883 TAAG
1 TAAG
18153887 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
TAAGCAGACGGAGTTCATCCCCAGTC
Found at i:18155516 original size:26 final size:26
Alignment explanation
Indices: 18155480--18155532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18155470 TACGCAGAGG
*
18155480 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18155506 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18155532 G
1 G
18155533 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18161519 original size:26 final size:26
Alignment explanation
Indices: 18161483--18161535 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18161473 GTTGGCTTAG
*
18161483 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTACATTCCCA-GTCTAA
18161509 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
18161535 G
1 G
18161536 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Done.