Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 161 of 402
Found at i:18161723 original size:26 final size:26
Alignment explanation
Indices: 18161692--18161744 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18161682 GTTGACTTAG
*
18161692 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
18161718 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18161744 G
1 G
18161745 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18161913 original size:26 final size:26
Alignment explanation
Indices: 18161876--18161928 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18161866 GTTGACATAG
*
18161876 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
18161902 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
18161928 G
1 G
18161929 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:18162007 original size:184 final size:184
Alignment explanation
Indices: 18161672--18162085 Score: 512
Period size: 184 Copynumber: 2.2 Consensus size: 184
18161662 CCCATACGCT
18161672 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCC
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCC
* * * ** * *
18161737 AGTCTAAGATCGAATTGGACCGAGGGTTGCGGTAGCAGGATTGACTGCACGCAGGGGGGATAGGA
66 AATCTAAGATCGAATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGATAAGA
**
18161802 CCGATCCCTGGCTTACGCATTCTGCCCCTCCGACCGGCTGAGCGCCTGTAAGCC
131 CCGATCCCTGGCTTACGCATTCTGCCCCTCCGACCGGCTGAGCGCCTCCAAGCC
* *
18161856 CGTTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAA-TCTAAGCATACGAAGTTCATTCC
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAAGTCTAAGCATACGAAGTTCATTCC
* * * *
18161920 CAATCTAAGATC-AGATCGGACTGAGGGTTGTGGCAGCAGGATCAACAGCACGGATGGGGGACTA
65 CAATCTAAGATCGA-ATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGA-TA
* * * * * * *
18161984 AG-TCGAT-CCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGTCTCCATGCC
128 AGACCGATCCCT-GGCTTACGCATTCTGCCCCTCCGACCGGCTGAGCGCCTCCAAGCC
* * * * * *
18162040 CATTTCATGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAA
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAA
18162086 ACCCCAGCTG
Statistics
Matches: 195, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
183 7 0.04
184 180 0.92
185 8 0.04
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCC
AATCTAAGATCGAATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGATAAGA
CCGATCCCTGGCTTACGCATTCTGCCCCTCCGACCGGCTGAGCGCCTCCAAGCC
Found at i:18162406 original size:26 final size:26
Alignment explanation
Indices: 18162377--18162429 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18162367 GTTGGCTTAG
*
18162377 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAATTCATTCCTA-GTCTAA
*
18162403 GCATACGGAATTCGTTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
18162429 G
1 G
18162430 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:18162787 original size:26 final size:26
Alignment explanation
Indices: 18162757--18162809 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18162747 GTTGACTTAG
18162757 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18162783 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18162809 G
1 G
18162810 AGCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18163294 original size:26 final size:26
Alignment explanation
Indices: 18163258--18163310 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18163248 GCTGGCTTAG
*
18163258 GCATACGGAGTTCATT-TCATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
18163284 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
18163310 G
1 G
18163311 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:18163869 original size:159 final size:157
Alignment explanation
Indices: 18163493--18163877 Score: 400
Period size: 159 Copynumber: 2.4 Consensus size: 157
18163483 CCCAATCTAA
* * * * **
18163493 GCATACGAAGTTCATTCCCAGTCAAAGATCAAACC-AGACCAAGGGTTACGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGA-ACCAAGGGTTACGGCAGTAGGACCGGT
* * * * *
18163557 AGCACGTAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCTGCTAAGTGC
64 AGCACGAAAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTAAGTGC
* ** * * *
18163622 CCGCACGTCCATTTTGTTGGTTGGCTTAG
129 CCGAACGTCCATTTCATGGGTCGACTTAG
* ** ** * *
18163651 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCAAGGGTTGTGGCTGCAGGACCGGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGAACCAAGGGTTACGGCAGTAGGACCGGT
* * * *
18163715 AGCACGCAAAGAGGGATCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTCCGATCAGCTCAA-T
64 AGCACG-AAAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCT-AAGT
*
18163779 GCTCGAACG-CTCATTTCATGGGTCGACTTAG
127 GCCCGAACGTC-CATTTCATGGGTCGACTTAG
*
18163810 GCATACGGAGTTCATTCACAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGTAGGACCAGTA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGTAGGACCGGTA
18163875 GCA
65 GCA
18163878 GGATTGGCAG
Statistics
Matches: 182, Mismatches: 37, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 52 0.29
159 123 0.68
160 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGTAGGACCGGTAG
CACGAAAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTAAGTGCCC
GAACGTCCATTTCATGGGTCGACTTAG
Found at i:18164871 original size:26 final size:26
Alignment explanation
Indices: 18164834--18164886 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18164824 GTTTACTTAG
* *
18164834 GCATACAGAGTTTATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18164860 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
18164886 G
1 G
18164887 ATTAGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18165178 original size:159 final size:158
Alignment explanation
Indices: 18164989--18165361 Score: 459
Period size: 158 Copynumber: 2.4 Consensus size: 158
18164979 GGCCTATTCA
* * ** *
18164989 CCCGCACGCTCGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG-ACCAGAC
* * * *
18165053 CAGACTGAGGGTT-ATGGCAGCGGGACCGGTAACATGCAGAGGGGGATCAGACT-GATCCTTGGC
65 CAGACTGAGGGTTGA-GGCAGCAGGACCGGCAACACGCAG-GGGGGA-CAGACTCGATCCCTGGC
18165116 TTGCGCATTATGCCAT-TCCGACCGGCTCAGCG
127 TTGCGCATTATGCC-TCTCCGACCGGCTCAGCG
* * *
18165148 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAGATCAGAC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCAGAC
* * **
18165212 CAGACTGAGGGTTGAGGCAGCAGGATCGGCAACACGCAGGGGGGACCGGGTCGATCCCTGGCTTG
65 CAGACTGAGGGTTGAGGCAGCAGGACCGGCAACACGCAGGGGGGACAGACTCGATCCCTGGCTTG
* * *
18165277 TGCATTCTGCCTCTCCGACCGGCTGAGCG
130 CGCATTATGCCTCTCCGACCGGCTCAGCG
* * *
18165306 CCAGCACGTTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
18165362 TCATACGGAG
Statistics
Matches: 184, Mismatches: 24, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
157 7 0.04
158 92 0.50
159 81 0.44
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGACC
AGACTGAGGGTTGAGGCAGCAGGACCGGCAACACGCAGGGGGGACAGACTCGATCCCTGGCTTGC
GCATTATGCCTCTCCGACCGGCTCAGCG
Found at i:18165373 original size:26 final size:26
Alignment explanation
Indices: 18165337--18165387 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18165327 TTGGCTTAGG
18165337 CATACAGAGTTCATTCC-ATGTCTAAT
1 CATACAGAGTTCATTCCTA-GTCTAAT
*
18165363 CATACGGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATTCCTAGTCTAA
18165388 GATCAGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAT
Found at i:18165911 original size:26 final size:26
Alignment explanation
Indices: 18165874--18165952 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
18165864 GTTGACTCAG
*
18165874 GCATACGAAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18165900 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18165926 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18165952 G
1 G
18165953 ATCGGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18166494 original size:26 final size:26
Alignment explanation
Indices: 18166464--18166516 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18166454 GTTGACTTAG
18166464 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
18166490 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18166516 G
1 G
18166517 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18166997 original size:26 final size:26
Alignment explanation
Indices: 18166967--18167022 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18166957 TGGGTTGAAT
18166967 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
18166993 TAAGCATACGGAGTTTATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
18167019 TAAG
1 TAAG
18167023 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:18167516 original size:26 final size:26
Alignment explanation
Indices: 18167469--18167518 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18167459 GGCTTAGGCG
*
18167469 TACAGAGTTCATTCCATGTCTAAGCA
1 TACAGAGTTCATTCCATATCTAAGCA
18167495 TACAGAGTTCATTCCCA-ATCTAAG
1 TACAGAGTTCATT-CCATATCTAAG
18167519 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (26 bp):
TACAGAGTTCATTCCATATCTAAGCA
Found at i:18167704 original size:26 final size:26
Alignment explanation
Indices: 18167675--18167727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18167665 GTTGACTTAG
*
18167675 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
18167701 GCATGCGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18167727 G
1 G
18167728 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18168169 original size:158 final size:158
Alignment explanation
Indices: 18167815--18168173 Score: 355
Period size: 158 Copynumber: 2.3 Consensus size: 158
18167805 GCCCGTTTTG
* ** * * *
18167815 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGT
1 TGGGTTTGCTTAGGCATAAAGAGTTCATT-CATGTCTAAGCACCAGCCGGACCGAGGGTTGCGAT
* * * * * * * *
18167880 AGCGGGATCGATAGCACGCAGAGGGGGTCTGGGCCAATCCTCGGCTTGCGCATTATCCCTCTCCG
65 AGCAGGATCGACAGCACGCAGAGGGGGTCCGAGCCAATCCTCGACTTACACATTATCCCTCTCCA
* **
18167945 GTCGGCTCAGTGCCCGAACACTCATTTTG
130 GTCGGCTCAGCGCCCGAACACTCATTTCA
* * *
18167974 TGGG-TTGACTTAGGCATAAAAAGTTCATTCCTAGTCTAAG-ATCAGACCGGACCGAGGGTTGCG
1 TGGGTTTG-CTTAGGCATAAAGAGTTCATTCAT-GTCTAAGCACCAG-CCGGACCGAGGGTTGCG
* * ** * * *
18168037 ATAGCAGGATCGACAGCACGTAG-GGGGGTCCGAGTCGGTCCTCGACTTATACATTCTGCCTCTC
63 ATAGCAGGATCGACAGCACGCAGAGGGGGTCCGAGCCAATCCTCGACTTACACATTATCCCTCTC
* * * *
18168101 CAGTCGGCTGAGCGCCCGTACGCTCGTTTCA
128 CAGTCGGCTCAGCGCCCGAACACTCATTTCA
* *
18168132 TGGGTTTGCTTAGGCATACAGAGTTTATTCGATGTCTAAGCA
1 TGGGTTTGCTTAGGCATAAAGAGTTCATTC-ATGTCTAAGCA
18168174 TACGGAGTTC
Statistics
Matches: 159, Mismatches: 35, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
158 90 0.57
159 69 0.43
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
TGGGTTTGCTTAGGCATAAAGAGTTCATTCATGTCTAAGCACCAGCCGGACCGAGGGTTGCGATA
GCAGGATCGACAGCACGCAGAGGGGGTCCGAGCCAATCCTCGACTTACACATTATCCCTCTCCAG
TCGGCTCAGCGCCCGAACACTCATTTCA
Found at i:18168543 original size:157 final size:157
Alignment explanation
Indices: 18168294--18168713 Score: 371
Period size: 159 Copynumber: 2.7 Consensus size: 157
18168284 CATTTTGCCT
* * * * * *
18168294 CTCCGGCTGGCTGAGCACCCACACGCTTGTTTAGTGGGTTCGCTTAGGCATAGGGAGTTCATT-C
1 CTCCGACTGGCTCAACACCCACACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCC
* * ** * * * * * * *
18168358 TATGTCTAAG-CCCCAGTCGGACCAAGGGTTATGGCAGCGGGATCGATAGCA-CATAGGGGGATC
65 CA-GTCTAAGATCGGA-TCGGACCGAGGGTTATGGCAGCAGGATCAACAACAGCAAAGGGCGATC
* *
18168421 GGG-CAGATCCCCAACTTGTGCATTATGCAT
128 GGGTC-GATCCCCAACTTGCGCATTATGCAC
* *
18168451 GTCCGACTGGCTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CTCCGACTGGCTCAACACCCACACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCC
** * *
18168516 CAGTCTAAGATCGGATCAAACCGAGGGTTACGACAGCAGGATCAACAACATGCAAAGGGCGATCG
65 CAGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGCAGGATCAACAACA-GCAAAGGGCGATCG
* ** * *
18168581 GGTCGGTCCCCGGCTTGCGCATTCTGCCC
129 GGTCGATCCCCAACTTGCGCATTATGCAC
** * * * * * * * *
18168610 CTCCGGTTGGTTGAGCACCCGCATGCTCATTTCGTGGGTTGGCTTAGGCTTACGAAGTTCATTCC
1 CTCCGACTGGCTCAACACCCACACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCC
* *
18168675 CAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAG
65 CAGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGCAG
18168714 AACCAGTAGC
Statistics
Matches: 208, Mismatches: 48, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
156 1 0.00
157 86 0.41
158 4 0.02
159 115 0.55
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CTCCGACTGGCTCAACACCCACACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGCAGGATCAACAACAGCAAAGGGCGATCGGG
TCGATCCCCAACTTGCGCATTATGCAC
Found at i:18169049 original size:25 final size:26
Alignment explanation
Indices: 18168999--18169102 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 26
18168989 GTTGACATAG
*
18168999 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18169025 GCATACGGAGTTCAT-CCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18169050 GCATACGGAGTTCATCCCCCGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18169076 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18169102 G
1 G
18169103 ATTGGACCAG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
25 25 0.35
26 47 0.65
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18169061 original size:51 final size:52
Alignment explanation
Indices: 18168999--18169102 Score: 174
Period size: 51 Copynumber: 2.0 Consensus size: 52
18168989 GTTGACATAG
*
18168999 GCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAA
* *
18169050 GCATACGGAGTTCATCCCCCGTCTAAGCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAA
18169102 G
1 G
18169103 ATTGGACCAG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 38 0.78
52 11 0.22
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (52 bp):
GCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAA
Found at i:18170219 original size:26 final size:26
Alignment explanation
Indices: 18170153--18170231 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
18170143 GTTAACTTAG
* *
18170153 GCATACGGAGTTCAACCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18170179 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18170205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18170231 G
1 G
18170232 ATCGAACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18170514 original size:158 final size:155
Alignment explanation
Indices: 18170345--18170706 Score: 395
Period size: 158 Copynumber: 2.3 Consensus size: 155
18170335 CTCACGCCTG
* *
18170345 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAACTGGACCGAGGGTTG
1 TTTCAT-GGTTGGCTTAGGCATAAGGAGTTCATTCC-TGTCTAAGCCCAACCGAACCGAGGGTTG
** * *
18170410 TGGCAGCAGGATCGACAGCATGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTC
64 CAGCAGCAGGATCGACAGCATGCAG-GGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTC
* * * *
18170475 TCCGGCTA-GCTCAGTGCCCGAATGCTCA
128 CCCAG-TAGGCTCAGCGCCCGAACGCTCA
* * * *** *
18170503 TTTCGTTGGTTGACTTTGGCATACA-GAGTTCATTCCTAGTCTAAGATTGAACCGAACTGAGGGT
1 TTTC-ATGGTTGGCTTAGGCATA-AGGAGTTCATTCCT-GTCTAAG-CCCAACCGAACCGAGGGT
* * *
18170567 TGCAGTAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCTCTGACTTGCGCATTCTGCCT
62 TGCAGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCT
* * **
18170632 CCCCAGTAGGCTGAGCGCCCGCACGCTTG
127 CCCCAGTAGGCTCAGCGCCCGAACGCTCA
*
18170661 TTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAAGC
1 TTTCATGG-TTGGCTTAGGCATAAGGAGTTCATTCC-TGTCTAAGC
18170707 ATACGGATTT
Statistics
Matches: 167, Mismatches: 29, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
157 6 0.04
158 122 0.73
159 39 0.23
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (155 bp):
TTTCATGGTTGGCTTAGGCATAAGGAGTTCATTCCTGTCTAAGCCCAACCGAACCGAGGGTTGCA
GCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCCCC
AGTAGGCTCAGCGCCCGAACGCTCA
Found at i:18170729 original size:26 final size:26
Alignment explanation
Indices: 18170679--18170738 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
18170669 ATTGGCTTAG
* ***
18170679 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGATTTCATTCCCAATCTAA
18170705 GCATACGGATTTCATTCCCAATCTAA
1 GCATACGGATTTCATTCCCAATCTAA
18170731 G-AT-CGGAT
1 GCATACGGAT
18170739 CGGATCGAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 5 0.17
25 2 0.07
26 23 0.77
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGATTTCATTCCCAATCTAA
Found at i:18172142 original size:159 final size:154
Alignment explanation
Indices: 18171765--18172146 Score: 349
Period size: 159 Copynumber: 2.4 Consensus size: 154
18171755 CCCAATCTAA
* * * * *
18171765 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACTGGACCGATGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
** * * * * * *
18171830 GCACGTAGGAGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCATCTCCGGTCGGTTGCCCACA
66 GCACACAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTATGCATCTCCGGTCAGTCGCCCACA
**
18171895 CGCCCATTTCGTGGGTTGGCTTAG
131 CGCCCATTTCGTGGGTTAACTTAG
* ** * ** * ** * * *
18171919 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACGGGACTAAGTGTTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGA
* *
18171982 CAGCATACAGAGAGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCTAGCTGGCTCAG-
64 CAGCACACAG-GAGGGACCGGGCCGATCCCCGGCTTACGCATTATGCATCTC---C-GG-TCAGT
* * * *
18172046 CGCCCGA-ATGCTCGTTTTGTGGGTTAACTTAG
123 CGCCC-ACACGCCCATTTCGTGGGTTAACTTAG
*
18172078 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
18172143 GCAC
66 GCAC
18172147 GTAAGGGGGG
Statistics
Matches: 171, Mismatches: 46, Indels: 17
0.73 0.20 0.07
Matches are distributed among these distances:
153 2 0.01
154 49 0.29
155 37 0.22
158 3 0.02
159 73 0.43
160 7 0.04
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
GCACACAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTATGCATCTCCGGTCAGTCGCCCACA
CGCCCATTTCGTGGGTTAACTTAG
Found at i:18172272 original size:26 final size:26
Alignment explanation
Indices: 18172238--18172288 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18172228 TTGGCTTAGG
18172238 CATAAGGAGTTCATTCC-ATGTCTAAC
1 CATAAGGAGTTCATTCCTA-GTCTAAC
*
18172264 CATACGGAGTTCATTCCTAGTCTAA
1 CATAAGGAGTTCATTCCTAGTCTAA
18172289 GATCAAATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCTAGTCTAAC
Found at i:18172558 original size:25 final size:26
Alignment explanation
Indices: 18172508--18172559 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18172498 GTTGACTTAG
18172508 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18172534 GCATACGGAGTTCAT-CCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18172559 G
1 G
18172560 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18172894 original size:26 final size:26
Alignment explanation
Indices: 18172858--18172907 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18172848 GGCTTAGGTA
*
18172858 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGAAGTTCATTCCCA-GTCTAAGCT
18172884 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
18172908 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:18173451 original size:26 final size:26
Alignment explanation
Indices: 18173415--18173467 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18173405 GTTGGCTTAG
*
18173415 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
18173441 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
18173467 G
1 G
18173468 ATCAATCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:18173893 original size:26 final size:26
Alignment explanation
Indices: 18173863--18173912 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18173853 TGGCTTAGGT
18173863 ATACGGAGTTCATT-CCATGTCTAACC
1 ATACGGAGTTCATTCCCA-GTCTAACC
18173889 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
18173913 GATCGGACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAACC
Found at i:18174398 original size:159 final size:158
Alignment explanation
Indices: 18174140--18174441 Score: 392
Period size: 159 Copynumber: 1.9 Consensus size: 158
18174130 CTGGATCGAG
* * * ** *
18174140 GGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGACTTGCACATTTTG
1 GGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCACATTTTA
18174205 CCTCTCTAGTCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCA
66 CCTCTCTAGTCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCA
18174269 TTCCATGTCTAAGCCCCAACCGGGCTGAA
130 TTCCATGTCTAAGCCCCAACCGGGCTGAA
* * * * * **
18174298 GGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACTGAGCCAATCCTCGACTTGTGCATTTT
1 GGTTGCGGCAGCAGGACCGACAGCACGCAG-GGGGGACCGAGCCAATCCCCGACTTGCACATTTT
* * * * *
18174363 ACCTCTCTAG-CTGGCTGATCGCCTGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTC
65 ACCTCTCTAGTC-GGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTC
*
18174427 ATTCCTTGTCTAAGC
129 ATTCCATGTCTAAGC
18174442 ATACGGAGTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
158 26 0.21
159 95 0.78
160 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
GGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCACATTTTA
CCTCTCTAGTCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCAT
TCCATGTCTAAGCCCCAACCGGGCTGAA
Found at i:18174451 original size:26 final size:26
Alignment explanation
Indices: 18174414--18174466 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18174404 GTTGGCTTAG
**
18174414 GCATACGAAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
18174440 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18174466 G
1 G
18174467 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18175354 original size:158 final size:158
Alignment explanation
Indices: 18175118--18175479 Score: 404
Period size: 159 Copynumber: 2.3 Consensus size: 158
18175108 CGCATGCTCG
* *
18175118 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTAGACCAAACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGACTAGACCAAACCGAGGGTT
* * * * *
18175183 GCGGTAGCAGGATCGACAACACGCAG-GGGGGATCGGGCTGATCCCCGATTTACGCATTCTACCT
65 GCGGTAGCAGGATCGACAACACACAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTCTACCT
* * *
18175247 CTCCAGCAGGCTGAGTGCCCGCACGCCCA
130 CTCCAGCAGGCAGAGCGCCCGCACGACCA
* * * * **
18175276 TTTCGTGGGTTGGCTTAGGCACAGGGAGCTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ACTAGACCAAACCGAGGGT
* * * * * * * * *
18175340 TGTGGTAGCTGGATCGGCATCACATAGAGAGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCC
64 TGCGGTAGCAGGATCGACAACACACAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTCTACC
* * * * *
18175405 TCTCCGGCCGGCAGAGCGCCCGTACGATCG
129 TCTCCAGCAGGCAGAGCGCCCGCACGACCA
*
18175435 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGA
18175480 GTTTGAGCCA
Statistics
Matches: 166, Mismatches: 35, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
157 5 0.03
158 74 0.45
159 87 0.52
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGACTAGACCAAACCGAGGGTTG
CGGTAGCAGGATCGACAACACACAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTC
TCCAGCAGGCAGAGCGCCCGCACGACCA
Found at i:18175447 original size:159 final size:157
Alignment explanation
Indices: 18175063--18175479 Score: 460
Period size: 158 Copynumber: 2.6 Consensus size: 157
18175053 ACCACCCATT
* * * *
18175063 CGATCCCCGGCTTGCGCA-TCTTGCCTCTCTGGTCGGCTGAGCGTCCGCATGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTC-TGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
18175127 TTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTAGACCAAACCGAGGGTTGCGGTAGCA
65 TTGGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGACTAGACCAAACCGAGGGTTGCGGTAGCA
* * *
18175192 GGATCGACAACACGCAGGGGGGATCGGGC
129 GGATCGACAACACACAGGAGGGACCGGGC
* ** * * * * * * *
18175221 TGATCCCCGATTTACGCATTCTACCTCTCCAGCAGGCTGAGTGCCCGCACGCCCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * ** * *
18175286 TGGCTTAGGCACAGGGAGCTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGTAGCT
66 TGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ACTAGACCAAACCGAGGGTTGCGGTAGCA
* * *
18175350 GGATCGGCATCACATAGAGAGGGACCGGGC
129 GGATCGACAACACACAG-GAGGGACCGGGC
* * * *
18175380 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCAGAGCGCCCGTACGATCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
18175445 TGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGA
66 TGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGA
18175480 GTTTGAGCCA
Statistics
Matches: 206, Mismatches: 49, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
157 5 0.02
158 112 0.54
159 89 0.43
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGACTAGACCAAACCGAGGGTTGCGGTAGCAGG
ATCGACAACACACAGGAGGGACCGGGC
Found at i:18178199 original size:157 final size:157
Alignment explanation
Indices: 18177786--18178200 Score: 406
Period size: 159 Copynumber: 2.6 Consensus size: 157
18177776 TCGCTCAAAC
* * * *
18177786 TCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAATGACCGTACGGGCGCTCAGT
1 TCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-
* * * * ** * * *
18177851 CGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCTGGTCCCTCTCTATGTGATGCCGATCC
65 CCGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCTCCCTACGTGATGCCGATCC
* *
18177916 AGCTACCACAACCCTCGGTCCGGCTAGG
130 AGCTACCACAACCCTCGGTCAGGCTAGA
* * * * *
18177944 GCTTAGACATGGAATGAGCTCTC-TGTGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCA
1 TCTTAGAC-TGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * *
18178008 GCCTGCCAGAGAGGTAGAATGCGTAAACCAGGGATCAACCCGGTCCC-CCCTGCGTGTTGCCGAT
64 GCC-GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCTCCCTACGTGATGCCGAT
* * * ** * *
18178072 CCTGTTGCCGTAACCCTTGGTCTAGTCTA-A
128 CCAGCTACCACAACCCTCGGTC-AGGCTAGA
* * *
18178102 TCTTAGACTGGAAATGAACTCCGTATGCCTAA-TCAACCCACGAAACGAGCGTGCGGACGCTCAG
1 TCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
*
18178166 CCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATC
65 CCG-CCAGAGAGGCAGAATGCGCAAGCCGGGGATC
18178201 GAACGGGTGG
Statistics
Matches: 204, Mismatches: 46, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 59 0.29
158 60 0.29
159 84 0.41
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
TCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCTCCCTACGTGATGCCGATCCA
GCTACCACAACCCTCGGTCAGGCTAGA
Found at i:18178844 original size:26 final size:26
Alignment explanation
Indices: 18178806--18178858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18178796 GGCTCAAACT
**
18178806 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
18178832 CTTAGACAAGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
18178858 C
1 C
18178859 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:18179397 original size:26 final size:26
Alignment explanation
Indices: 18179360--18179410 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18179350 TGGTTCGATC
18179360 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
18179386 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
18179411 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:18179843 original size:26 final size:26
Alignment explanation
Indices: 18179806--18179856 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18179796 TGGACTGATC
18179806 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACTGGGAATGAACTTCGTATGT
18179832 TTAGACAT-GGAATGAACTTCGTATG
1 TTAGAC-TGGGAATGAACTTCGTATG
18179857 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGT
Found at i:18180399 original size:26 final size:26
Alignment explanation
Indices: 18180361--18180410 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18180351 GGCTCAAACT
18180361 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
18180387 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
18180411 TACCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:18180732 original size:25 final size:26
Alignment explanation
Indices: 18180704--18180755 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18180694 CCGGTCTGAT
18180704 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
18180729 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
18180755 C
1 C
18180756 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:18181005 original size:26 final size:26
Alignment explanation
Indices: 18180976--18181026 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18180966 CGATTTGATC
18180976 TTAGAC-TAGGAATGAACTCCGTATGG
1 TTAGACAT-GGAATGAACTCCGTATGG
*
18181002 TTAGACATGGAATGAACTCCTTATG
1 TTAGACATGGAATGAACTCCGTATG
18181027 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:18181188 original size:26 final size:26
Alignment explanation
Indices: 18181159--18181237 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
18181149 CCGGTTCGAT
18181159 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18181185 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCGTATG
*
18181211 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18181237 C
1 C
18181238 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 3 0.06
26 42 0.88
27 3 0.06
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18182351 original size:25 final size:25
Alignment explanation
Indices: 18182282--18182385 Score: 154
Period size: 26 Copynumber: 4.0 Consensus size: 25
18182272 CTGGTCCAAT
*
18182282 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
*
18182308 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGAC-TGGGATGAACTCCGTATG
18182334 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTGGGATGAACTCCGTATG
*
18182359 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
18182385 C
1 C
18182386 CTAAGTCAAC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 25 0.35
26 44 0.61
27 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:18182359 original size:51 final size:52
Alignment explanation
Indices: 18182282--18182385 Score: 174
Period size: 51 Copynumber: 2.0 Consensus size: 52
18182272 CTGGTCCAAT
*
18182282 CTTAGATTGGGAATGAACTCCGTATGCTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGGATGAACTCCGTATG
* *
18182334 CTTAGACTGGG-ATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGGATGAACTCCGTATG
18182385 C
1 C
18182386 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 39 0.80
52 10 0.20
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (52 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGGATGAACTCCGTATG
Found at i:18182669 original size:171 final size:168
Alignment explanation
Indices: 18182358--18183159 Score: 555
Period size: 171 Copynumber: 4.8 Consensus size: 168
18182348 AACTCCGTAT
* * * * * *
18182358 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
** * * * ** * * * * * * *
18182423 CCGGTCGGATAGGCATAATGCACAAGCCAGGGATTAGCTCGGTCCCCCTCAGTGTGCT-ACTGAT
66 CC-ACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGATCCCCC-CTGCGTGCTGTC-GAT
* * ** *
18182487 CTCGTTGCTGGTCCTGCTGCCACAACCCTCGATTAGGCTGGG
128 CT-GCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGA
*
18182529 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
18182593 GCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGATCCCCTCCTGCGTGCTGTCGAT
65 GCC-ACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGATCCCC-CCTGCGTGCTGTCGAT
*
18182658 CCTGCTGCTGGTTCTGCTGCCACAACCCTCGGTCCGGTCT-GA
128 -CTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGG-CTGGA
* ** * *
18182700 TCTTAGACTGGGAATGAACTTTGTAAGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * ** *
18182765 CCAACCGGAGGGGCAGAATGTGCAAGCCGGGGACCGACCCGATCACCCTTTGCGTGTTGTCGATC
66 CC-ACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGATC-CCCCCTGCGTGCTGTCGATC
* * * *
18182830 --CTGC---T-AT-C-G---CAACCCTCGGTTC-GATCCGA
129 TGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGCT-GGA
* * * * * * * *
18182859 TCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGCATGTGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * *
18182924 CCAGTCGGACATGCATAATGCACAAGTTGGGGATCTACCCGAT-CCCCC--C-T-ATGT-G--CT
66 CCA-CCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCT
* * * * *
18182981 GC--C-GGTCCCGCTGCCACAAACCTTGGTCCGACTGGG
130 GCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGA
* * * * *
18183017 GCTTAGACAT-AGAATGAACTCCCTATGCCTAAGCCAACCCACTAAACAAGCGTGGGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * *
18183081 GCCAGCCGGAGAGGCAGAATGCGCAAG-TCGTGGATCAACTGCG-TCCCCCCTGCTTACTGCCGA
65 GCCA-CCGGAGAGGCAGAATGCGCAAGCT-GGGGATCAAC-CCGATCCCCCCTGCGTGCTGTCGA
*
18183144 TCCTACTGCTGGTCCT
127 T-CTGCTGCTGGTCCT
18183160 ATTGCCGTAA
Statistics
Matches: 494, Mismatches: 101, Indels: 73
0.74 0.15 0.11
Matches are distributed among these distances:
150 2 0.00
152 3 0.01
153 3 0.01
154 2 0.00
155 2 0.00
157 5 0.01
158 94 0.19
159 109 0.22
161 1 0.00
162 2 0.00
163 3 0.01
164 2 0.00
165 1 0.00
167 3 0.01
168 4 0.01
169 1 0.00
170 7 0.01
171 240 0.49
172 10 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (168 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCTG
CTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGA
Found at i:18182964 original size:159 final size:159
Alignment explanation
Indices: 18182680--18183107 Score: 360
Period size: 159 Copynumber: 2.7 Consensus size: 159
18182670 TCTGCTGCCA
* * **
18182680 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTAAGCCTAAGCCAACCCACGAA
1 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAA
* ** **
18182745 ACGAGCATGCGGGTGCTCAGCCAACCGGAGGGGCAGAATGTGCAAGCCGGGGACCGACCCGATCA
66 ACGAGCATGCGGGCGCTCAGCCAACCGGACAGGCAGAATGCACAAGCCGGGGACCGACCCGATCA
18182810 CCCTTTGCGTGTTGTCGATCCTGCTATCG
131 CCCTTTGCGTGTTGTCGATCCTGCTATCG
* * * * *
18182839 CAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAA
1 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAA
* * ** * * ** * *
18182904 ACGAGCATGTGGGCGCTGAGCCAGTCGGACATGCATAATGCACAAGTTGGGGATCTACCCGATCC
66 ACGAGCATGCGGGCGCTCAGCCAACCGGACAGGCAGAATGCACAAGCCGGGGACCGACCCGAT-C
* * * * * * ** *
18182969 CCCCTAT--GTGCTGCCGGTCCCGCTGCCA
130 ACCCTTTGCGTGTTGTCGATCCTGCTATCG
* * * ** * * * *
18182997 CAAACCTTGGTCCGA-CTGGGGCTTAGACAT-AGAATGAACTCCCTATGCCTAAGCCAACCCACT
1 CAACCCTCGGTCCGATC-CGATCTTAGAC-TGGGAATGAACTCCGTAAGCCTAAGCCAACCCACG
* * * * * * *
18183060 AAACAAGCGTGGGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAG
64 AAACGAGCATGCGGGCGCTCAGCCAACCGGACAGGCAGAATGCACAAG
18183108 TCGTGGATCA
Statistics
Matches: 211, Mismatches: 55, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
157 1 0.00
158 99 0.47
159 105 0.50
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAA
ACGAGCATGCGGGCGCTCAGCCAACCGGACAGGCAGAATGCACAAGCCGGGGACCGACCCGATCA
CCCTTTGCGTGTTGTCGATCCTGCTATCG
Found at i:18183711 original size:26 final size:26
Alignment explanation
Indices: 18183659--18183711 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18183649 CCGGTTTGAT
*
18183659 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
18183685 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGCATG
18183711 C
1 C
18183712 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:18183897 original size:26 final size:26
Alignment explanation
Indices: 18183868--18183917 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18183858 CCGGTCTGAT
18183868 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
18183894 CTTAGACATGGAATGAACTCTGTA
1 CTTAGACATGGAATGAACTCTGTA
18183918 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:18184290 original size:159 final size:151
Alignment explanation
Indices: 18183886--18184318 Score: 401
Period size: 159 Copynumber: 2.8 Consensus size: 151
18183876 GGGAATGAAC
* *
18183886 TCTGTATGCTTAGACATGGAATGAACT-CTGTACGCCTAAGCCAACCCACGAAACTAGCGTGCGG
1 TCTG-ATGCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
* * * * ** *
18183950 GTGCTCAGTCAGTCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCTTGGTCCCCCCTGCATGCC
64 GT-CTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCC-GGGATCGGCCCGATCCCCCCTGCATGCC
* *
18184015 ATTGATCCTACTACCGCAATCCTCGG
127 A-TGATCCCACTACCACAATCCTCGG
* ** * * *
18184041 TCTGAT-CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCATTCGGG
1 TCTGATGCTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
* * *
18184104 -CGTTGAGCC-GATCGGAGAGGCAAAATGCGTAAGCCGGTGATCGGCCCGATCCCTCTCTGCATG
65 TC--TCAGCCAG-TCGGAGAGGCAGAATGCGTAAGCCGG-GATCGGCCCGATCCC-CCCTGCATG
* * *
18184167 CTGCA-GCTCCCACTACCACAATCTTTGG
125 C--CATGATCCCACTACCACAATCCTCGG
* *
18184195 TCTGACTTGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGTGTGC
1 TCTGA--T--GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGC
* * *
18184260 GGGATCTCAGCCAGCCGGAGTGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCC
62 GGG-TCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCC-GGGATCGGCCCGATCCCCCC
18184319 AGCGTGCTGT
Statistics
Matches: 222, Mismatches: 37, Indels: 35
0.76 0.13 0.12
Matches are distributed among these distances:
151 1 0.00
152 4 0.02
153 81 0.36
154 35 0.16
155 4 0.02
156 3 0.01
158 2 0.01
159 87 0.39
160 4 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (151 bp):
TCTGATGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGT
CTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCCGGGATCGGCCCGATCCCCCCTGCATGCCATGA
TCCCACTACCACAATCCTCGG
Found at i:18184400 original size:26 final size:26
Alignment explanation
Indices: 18184364--18184419 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18184354 CCGGTCCGAT
*
18184364 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
18184390 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18184416 CTTA
1 CTTA
18184420 ATTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18184901 original size:27 final size:27
Alignment explanation
Indices: 18184871--18184926 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
18184861 CCGGTCTGAT
18184871 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
*
18184898 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18184925 CT
1 CT
18184927 AAGTCAACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:18185473 original size:26 final size:26
Alignment explanation
Indices: 18185437--18185515 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
18185427 CCGGTCTGAT
* *
18185437 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
18185463 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
* *
18185489 CTTAAACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
18185515 C
1 C
18185516 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:18185634 original size:211 final size:211
Alignment explanation
Indices: 18185252--18185635 Score: 443
Period size: 211 Copynumber: 1.8 Consensus size: 211
18185242 TTGGTCTAAT
* * *
18185252 CTTAGACTGGGAATGAACTTCGTATGCTTAGATATGGAATGAACTTCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCC
** * * * * *
18185317 ATGAAACGAGCGTGCAGGTGGTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
66 ACAAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCC
* * * * **
18185382 GGTCCCACCCAACGTACTGTCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGG
131 AGTCCCACCCAACGTACTGCCGATCCCGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGG
18185447 GAATGAACTTCGTATG
196 GAATGAACTTCGTATG
* * *
18185463 CTTAGACTGGGGATGAACTCCGTATGCTTA-A-ACTGGGGATGAACTCCATATGCCTAAGTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGATA-T-GGAATGAACTCCATATGCCTAAGCCAAC
* * ** * * *
18185526 CTACAAAACGAGTGTGTGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCATAAGCCGAGGATCGAC
64 CCACAAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGAC
** *
18185591 CCAGTCCC-CCTCTGCGTGCTGCC-AGTCCCGCTGCCACAACCCTCG
129 CCAGTCCCACC-CAACGTACTGCCGA-TCCCGCTGCCACAACCCTCG
18185636 ATCCAGCTGG
Statistics
Matches: 140, Mismatches: 29, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
209 1 0.01
210 5 0.04
211 134 0.96
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (211 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCC
ACAAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCC
AGTCCCACCCAACGTACTGCCGATCCCGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGG
GAATGAACTTCGTATG
Found at i:18185842 original size:157 final size:157
Alignment explanation
Indices: 18185488--18185917 Score: 479
Period size: 157 Copynumber: 2.7 Consensus size: 157
18185478 AACTCCGTAT
* * *
18185488 GCTTAAACTGGGGATGAACTCCATATGCCTAAGTCAACCTACAAAACGAGTGTGTGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCAG
* * * *
18185553 CCGGCCGGAGAGGCAAAATGCATAAGCCGAGGATCGACCC-AGTCCCCCTCTGCGTGCTGCCAGT
66 CCGGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGA-T-CCCC-CTGCGTGCTGCCAGT
* *
18185617 CCCGCTGCCACAACCCTCGATCCAGCTGGG
128 CCCACTGCCACAACCCTCGATCCAGCTGGA
** * * * *
18185647 GCTTAGACAT-GAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCA
1 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCA
* * **
18185711 GCCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTGCGTGCTATC-GATC
65 GCCGGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCCCCTGCGTGCTGCCAG-TC
* ** * *
18185775 CTACTGCTGCAACCCTCGATCCAGTTTGA
129 CCACTGCCACAACCCTCGATCCAGCTGGA
* * *
18185804 TCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCAG
** * * * * * *
18185869 TGGGTCGGAGAGGGAGAATGCGTAAGTCGGGGATTGGCTCGGTCCCCCT
66 CCGGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCCCCT
18185918 ACATGCTGTT
Statistics
Matches: 225, Mismatches: 42, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
156 2 0.01
157 128 0.57
158 4 0.02
159 89 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCCCCTGCGTGCTGCCAGTCCC
ACTGCCACAACCCTCGATCCAGCTGGA
Found at i:18186006 original size:26 final size:26
Alignment explanation
Indices: 18185975--18186025 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18185965 CGATATGATC
18185975 TTAGAC-TAGGAATGAACTCCGTATGA
1 TTAGACAT-GGAATGAACTCCGTATGA
*
18186001 TTAGACATGGAATGAACTCTGTATG
1 TTAGACATGGAATGAACTCCGTATG
18186026 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGA
Found at i:18186362 original size:159 final size:158
Alignment explanation
Indices: 18186001--18186502 Score: 475
Period size: 159 Copynumber: 3.2 Consensus size: 158
18185991 CTCCGTATGA
* * *
18186001 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAACGTGCTGGCGCTCAGCC
1 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
18186066 GGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGTTGCCGATCCTG
66 GGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCCG
*
18186131 CTGCCTCAACCCTCAGTCTGGTCTGATC
131 CTGCCTCAACCCTCAGTCTGGTCTGAGC
* * *
18186159 TTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18186223 CGGCCGGA-ATGGCATAATGCGCAAGCCAGGGATC-AGTCCGATCCCCCTCTGCGTGCTGTCGGT
65 CGGCCAGAGA-GGCAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCC-CTGCGTGCTGCCGAT
*
18186286 CCCGCTGCCAT-AACCCTCAGTCTGG-CTGGGGC
127 CCCGCTGCC-TCAACCCTCAGTCTGGTCT-GAGC
** * * * * *
18186318 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGCGGGTGAAT-AGG
1 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-CTCA-G
** ** * * * **
18186382 CCAACCA-ACGAGGCAGAATGCGCAAGCTGGGGATCTACCCGGTCCCCCCTGCATGCTATCGATC
64 CCGGCCAGA-GAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATC
** * * * *
18186446 TTGCTGTCGCAACCCTC-GATCTGATCTGATC
128 CCGCTGCCTCAACCCTCAG-TCTGGTCTGAGC
18186477 TTAGAC-TGGGAATGAACT-TCGTATGC
1 TTAGACAT-GGAATGAACTCT-GTATGC
18186503 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 46, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
157 3 0.01
158 98 0.35
159 138 0.49
160 40 0.14
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCCG
CTGCCTCAACCCTCAGTCTGGTCTGAGC
Found at i:18186512 original size:26 final size:26
Alignment explanation
Indices: 18186476--18186528 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18186466 CTGATCTGAT
18186476 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
18186502 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18186528 C
1 C
18186529 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18188080 original size:26 final size:26
Alignment explanation
Indices: 18188051--18188103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18188041 CCGGTCCAAT
*
18188051 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18188077 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18188103 C
1 C
18188104 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18188595 original size:26 final size:26
Alignment explanation
Indices: 18188551--18188603 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18188541 CTGTTCTGCT
*
18188551 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
*
18188577 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATCAACTCCATATG
18188603 C
1 C
18188604 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:18188968 original size:26 final size:26
Alignment explanation
Indices: 18188930--18188982 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18188920 CAAGTCTGAT
*
18188930 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18188956 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18188982 C
1 C
18188983 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18189467 original size:26 final size:26
Alignment explanation
Indices: 18189431--18189483 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18189421 CCGATCCGAT
*
18189431 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
18189457 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
18189483 C
1 C
18189484 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:18189600 original size:184 final size:184
Alignment explanation
Indices: 18189274--18190034 Score: 718
Period size: 184 Copynumber: 4.0 Consensus size: 184
18189264 CAGCTGGGGT
* * * * * * * * *
18189274 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAGACGCTCAGCC
1 TTAGACTTGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCC
* * * * * * * *
18189339 GGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTCCGTGCTGTTGATCCTG
66 GGTCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCAGTCGATCCTG
* * *
18189404 CTGCCACAACCCTCAGTCCGATCCGATCTTAGATTGGGAATGAACTTCGTATGC
131 CTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18189458 TTAGA-TTGGGGATGAACTCCGTATGCCTATGTCAACCCACGAAACGGGCTTGCAGGCGCTCAGC
1 TTAGACTT-GGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * *
18189522 CGGTCGGAGAGGCAGAATGCGTAAGCC-AGGGATCGGCCCTGTCCCCCCTGCGTGCAGTCGATCC
65 CGGTCGGAGAGGCAGAATACGCAAGCCGA-GGATCGGCCCGGTCCCCCCTGCGTGCAGTCGATCC
* * * * *
18189586 TGCTGCCGCAACCCTCGGTCCAATTCAATCTTAGACTGGGAATGAACTTCGTATGC
129 TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18189642 TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCATTCAACC
1 TTAGACTTGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTC-A--
* * **
18189707 GACCGGAGAAGCCAATTGGAGAGGTAGAATACGCAAGCCGAGGATCATCCCGGTCCCCCCTGCGT
63 G-CC---G--G----TCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGT
* * *
18189772 GCTATCGATCCTGCTACTGTTCCTGCTGTCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAA
118 GC-A--G-T-C-G--A----TCCTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAA
*
18189837 TGTACTCCGTATGC
171 TGAACTCCGTATGC
* * * * *
18189851 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGCC
1 TTAGACTTGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCC
* * * * * *
18189916 AGTCGGAAAGGCAGAATACGCAAGCCGAGGACCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTT
66 GGTCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCAGTCGATCCTG
* * *
18189981 CTACCGCAACCCTC-GATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
131 CTGCCGCAACCCTCAG-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
18190035 CTAAGTCAGC
Statistics
Matches: 479, Mismatches: 68, Indels: 60
0.79 0.11 0.10
Matches are distributed among these distances:
183 3 0.01
184 259 0.54
185 3 0.01
187 1 0.00
188 3 0.01
190 1 0.00
191 2 0.00
192 1 0.00
193 2 0.00
196 45 0.09
197 43 0.09
198 2 0.00
200 2 0.00
201 1 0.00
202 1 0.00
203 1 0.00
205 3 0.01
206 1 0.00
208 1 0.00
209 104 0.22
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
TTAGACTTGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCC
GGTCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCAGTCGATCCTG
CTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:18189656 original size:26 final size:26
Alignment explanation
Indices: 18189615--18189667 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18189605 CCAATTCAAT
*
18189615 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18189641 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18189667 C
1 C
18189668 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18189853 original size:26 final size:26
Alignment explanation
Indices: 18189824--18189876 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18189814 CTGGTCCGAT
*
18189824 CTTAGAC-TGGGAATGTACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18189850 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18189876 C
1 C
18189877 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18190129 original size:894 final size:882
Alignment explanation
Indices: 18187744--18190449 Score: 2670
Period size: 880 Copynumber: 3.0 Consensus size: 882
18187734 CGTGCGGGCA
* * * * * ** *
18187744 CTCAGCAGGCCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCAAT-CCCCCTACGTGCTGTC
1 CTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCTGTCCCCCCTGCGTGCTGTC
* * * **
18187808 GATCCTACTGTCGTAACCCTTGGTCCGGTTTGATCTTTGACTGGGAATGAACTTCGTATGCTTAG
66 GATCCTGCTGCCG-AACCC-TGGTCC-ATTCAATC-TTGACTGGGAATGAACTTCGTATGCTTAG
* * * *
18187873 A-TTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAAC
127 ACTT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGAC
* * * * * * **
18187937 C-GAAAAGGCCGACCGAAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGATCCCTCCCACCGTG
191 CGGAGAA-GCC-A--GGAGAGGTAGAAT-CGCAAGCCGAGGATCGGCCCGGTCCC-CCCTGCGTG
* * * * * * *
18188001 CTA-CTGATCTTACTGCTGGTCCTGCT-ACTGTAACCCTCGTCCGGTCCAATCTTAGACTGGGAA
250 CTATC-GATCCTGCTACTGGTCCTGCTGTC-GCAACCCTCGTCAGGTCCGATCTTAGACTGGGAA
* * *
18188064 TGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-AGCCACAAAATGAGTGT
313 TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGT
* * * *
18188128 GCGGGTGCTCAGCCATCCAAAGAGGCAGAATGTGCAAGCCAGGGACTGGCTCGATCCCCCCTGTG
378 GCGGGTGCTCAGCCATCCGAAGAGGCAGAATGCGCAAGCCAGGGACCGGCTCGATCCCCCCTGCG
* * * *
18188193 TGCTATCGATCCTACTATCGCAACCCTC-AGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGT
443 TGCTGTCGATCCTACTACCGCAACCCTCGATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGT
* * **
18188257 ATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGTTGAGCCGGTCGGAGAGGCATAATGCGTA
507 ATGCCTAAGTCAACCCACGAAACGAGCGTT-TGGCATTGAG-CGGTCGGAGAGGCATAATGCGTA
* * * * * *
18188322 AACTAGGGATCGGT-TCGGTCCCCCTCTATGTGCTGCCGGTCCTGCTACGATAACCCTCGGTCCG
570 AGCTGGGGATC-ATCTCGATCCCCCTCTACGTGCTGCCGGTCCTGCTACCATAACCCTCGGTCCG
* * * *
18188386 GTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCGTATG--G
634 GCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-AGG-GCATGCAG
* * * ** * *
18188449 GCACTCAGCCGACCGGAGAGGTAGAATGTGTAATTCGGGGATTGGCCCGATCCACCCTGCGTGCT
697 GCGCTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCG-TCCCCCCTGCGTGCT
* * * *
18188514 GTCGATCCTGCTGTCGCAACCCTCGGTCTGTTCTGCTCTTAGACTGGGAATCAACTCCGTATGCT
761 GTCGATCCTGCTGTCGCAACCCTC-GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
18188579 TAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTCCGGGCGTT-CAGCC
825 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG-AA--A-----CGGGCGTTGCAG--
18188643 AACCG
880 -A-CG
*** * * * *
18188648 AAGAGGCCGACCGGAAAGGCATAATGCGTAAGTCAGGGATCAG-CCTGTTCCCCCTCTGCGTGCT
1 CTCA-GCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCTG-TCCCCC-CTGCGTGCT
* * ** * * ** **
18188712 GTCGATCCCGTTGCCG-GTCCTGCTGCCA--CAACTCTTG-GTCCG---G--C-T-G-GGGCTTA
63 GTCGATCCTGCTGCCGAACCCTGGT-CCATTCAA-TCTTGACTGGGAATGAACTTCGTATGCTTA
* * * * * *
18188765 GACATGGAATGAACTCCGTCTGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGAC
126 GACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGAC
* * * * *
18188830 CGGAG-AGGCA-GA-A--T-G---CGTAAGCCGGGGACCGGCCCGGTCCCCCCTGCGTGCTGT-G
191 CGGAGAAGCCAGGAGAGGTAGAATCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCG
* * * * * * *
18188885 ATCCTGCTACTGGTCCTACAGTCACAACCCTTGATCAAGTCTGATCTTAGACTGGGAATGAATTC
256 ATCCTGCTACTGGTCCTGCTGTCGCAACCCTCG-TCAGGTCCGATCTTAGACTGGGAATGAACTC
** **
18188950 CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACAAGCGTGCGGGTG
320 CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTG
* * * * * * ** *
18189015 CTCAGCCAACCGAAGACGTAGAATGCGCAAGCAAGGGACCGACCCGATCCCGTCTACGTGCTGTC
385 CTCAGCCATCCGAAGAGGCAGAATGCGCAAGCCAGGGACCGGCTCGATCCCCCCTGCGTGCTGTC
* * * * * *
18189080 GATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATAAACTCCATATACCTAA
450 GATCCTACTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
18189145 GTCAACTCACGAAATGAGCATGCTGGCATTGAGCCGACTGAAGAGGCATAATGCGTAAGCCGGGG
515 GTCAACCCACGAAACGAGCGT-TTGGCATTGAGCGGTC-GGAGAGGCATAATGCGTAAGCTGGGG
* * *
18189210 ATCAGCCCGATCCCCCTCTACGTGCTGCCGGTCCTGCTACCATAACCCTCGGTCCAGCTGGGGTT
578 ATCATCTCGATCCCCCTCTACGTGCTGCCGGTCCTGCTACCATAACCCTCGGTCCGGCTGGGGTT
* * *
18189275 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAGACGCTCAGCCG
643 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGCATGCAGGCGCTCAGCCG
* * * * * * *
18189340 GCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTCCGTGCTGTTGATCCTGC
708 GCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCC-GTCCCCCCTGCGTGCTGTCGATCCTGC
* * * * * *
18189405 TGCCACAACCCTCAGTCCGATCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGATTGGGGA
772 TGTCGCAACCCTC-GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
* *
18189470 TGAACTCCGTATGCCTATGTCAACCCACGAAACGGGC-TTGCAGGCG
836 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCGTTGCAGACG
** *
18189516 CTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCTGTCCCCCCTGCGTGCAGTC
1 CTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCTGTCCCCCCTGCGTGCTGTC
18189581 GATCCTGCTGCCGCAACCCTCGGTCCAATTCAATCTTAGACTGGGAATGAACTTCGTATGCTTAG
66 GATCCTGCTGCCG-AACCCT-GGTCC-ATTCAATCTT-GACTGGGAATGAACTTCGTATGCTTAG
* *
18189646 ACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCATTCAACCGACC
127 ACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACC
**
18189711 GGAGAAGCCAATTGGAGAGGTAGAATACGCAAGCCGAGGATCATCCCGGTCCCCCCTGCGTGCTA
192 GGAGAAGCC-A--GGAGAGGTAGAAT-CGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTA
* * *
18189776 TCGATCCTGCTACTGTTCCTGCTGTCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGTA
253 TCGATCCTGCTACTGGTCCTGCTGTCGCAACCCTC-GTCAGGTCCGATCTTAGACTGGGAATGAA
18189841 CTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGG
317 CTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGG
** * * *
18189906 GCACTCAGCCAGTCGGAA-AGGCAGAATACGCAAGCC-GAGGACCGGCTCGGTCCCCCCTGCGTG
382 GTGCTCAGCCA-TCCGAAGAGGCAGAATGCGCAAGCCAG-GGACCGGCTCGATCCCCCCTGCGTG
* *
18189969 CTGTCGATCCTTCTACCGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
445 CTGTCGATCCTACTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18190034 CCTAAGTCAGCCCACGAAACGAGCGTTTGAGCACTGAGTCGGTCGGAGAGGCATAATACGTAAGC
510 CCTAAGTCAACCCACGAAACGAGCGTTTG-GCATTGAG-CGGTCGGAGAGGCATAATGCGTAAGC
* * * ** * * * * **
18190099 TGGGGATCCTCTCGATCCCCTTATACGTGCTGTTGGTCCCGCTGCCACAACCCTCAGTTTGGCT-
573 TGGGGATCATCTCGATCCCCCTCTACGTGCTGCCGGTCCTGCTACCATAACCCTCGGTCCGGCTG
* * * *
18190163 AGGTCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC-AAAACGGGCGTGCAGGTGC
638 GGGT-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAA-GGGCATGCAGGCGC
* * * * * ** *
18190227 TCTGCAGGTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCTTGTATGCTGCCG
701 TCAGCCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCC-GTCCCCCCTGCGTGCTGTCG
* * * * * * * *
18190292 ATCCTTCTATCGTAA-CCTCGATCTGGTACAATCTTAGACTGGGAATGAACTCCATTTGCTTAGA
765 ATCCTGCTGTCGCAACCCTCG-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
18190356 CTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTATG--GACG
829 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCGT-TGCAGACG
* * * *
18190409 CTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCG
1 CTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCG
18190450 AACTGGTGGT
Statistics
Matches: 1446, Mismatches: 295, Indels: 133
0.77 0.16 0.07
Matches are distributed among these distances:
866 22 0.02
867 38 0.03
868 12 0.01
869 3 0.00
870 4 0.00
871 6 0.00
872 10 0.01
875 1 0.00
877 2 0.00
878 28 0.02
879 83 0.06
880 490 0.34
881 6 0.00
882 1 0.00
884 1 0.00
885 2 0.00
886 1 0.00
887 1 0.00
888 2 0.00
889 1 0.00
891 1 0.00
892 3 0.00
893 219 0.15
894 422 0.29
895 11 0.01
896 1 0.00
898 1 0.00
901 2 0.00
902 4 0.00
903 2 0.00
904 6 0.00
905 36 0.02
906 4 0.00
907 20 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (882 bp):
CTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCTGTCCCCCCTGCGTGCTGTC
GATCCTGCTGCCGAACCCTGGTCCATTCAATCTTGACTGGGAATGAACTTCGTATGCTTAGACTT
GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAG
AAGCCAGGAGAGGTAGAATCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
GCTACTGGTCCTGCTGTCGCAACCCTCGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGC
CATCCGAAGAGGCAGAATGCGCAAGCCAGGGACCGGCTCGATCCCCCCTGCGTGCTGTCGATCCT
ACTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTTTGGCATTGAGCGGTCGGAGAGGCATAATGCGTAAGCTGGGGATCATCTC
GATCCCCCTCTACGTGCTGCCGGTCCTGCTACCATAACCCTCGGTCCGGCTGGGGTTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGCATGCAGGCGCTCAGCCGGCCGGAGA
GGTAGAATGCGTAAGCCGGGGATCGGCCCGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAAC
CCTCGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGGGCGTTGCAGACG
Found at i:18195625 original size:26 final size:26
Alignment explanation
Indices: 18195596--18195648 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18195586 GGCTCAAACT
*
18195596 CTTAGAC-TGCAAATGAACTCTGTATG
1 CTTAGACATG-AAATGAACTCCGTATG
*
18195622 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
18195648 C
1 C
18195649 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCGTATG
Found at i:18195989 original size:26 final size:26
Alignment explanation
Indices: 18195938--18195990 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18195928 CCGATTTGAT
* * *
18195938 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
18195964 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
18195990 C
1 C
18195991 CCCCTACGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18196403 original size:418 final size:418
Alignment explanation
Indices: 18195622--18196409 Score: 937
Period size: 418 Copynumber: 1.9 Consensus size: 418
18195612 ACTCTGTATG
* * **
18195622 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
* * * *
18195687 CAACCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCTCTTCTATGTGCTGTCGGTCC
66 CAACCGGAGAGGCAGAATACACAAGCTGGGGATCGACCCGATCCTCTCCTATGTGCTATCGGTCC
* * * *
18195752 CACTACCACTACCCTCGATCCGGTTGAGGCTTATACATGGAATGAACTCCCTATGCTTAAGCCAT
131 CACTACCACAACCCTCGATCCGGTTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAC
** * * * * * *
18195817 CCATGAAACGGGTGTGCGGCCGCTCAACCGATCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGC
196 CCACAAAACGGGCGTACGGCCGCTCAACCGACCAGAGAGGCAGAATGAGCAAGCCAGGGATCGGC
* ** * * * * * **
18195882 CCGGTCCCCCCTGTGTGTTGTCGATCCTACTGCCACAACCGTCGGTCCGATTTGATCTTAGACTG
261 CCGATCCCCCCTGCATGCTATCGATCCTACTACCACAACCCTCAGTCCGATCCGATCTTAGACTG
* *
18195947 GGAATGAACTTCGTATGCTTAGACTGGGGATAAACTCCATATGCCCCCTACGTGCTGTCGATCCT
326 GGAATGAACTCCGTATGCTTAGACTGGAGATAAACTCCATATGCCCCCTACGTGCTGTCGATCCT
18196012 ACTACTGTAACCCTCAGTCCGATCTGAT
391 ACTACTGTAACCCTCAGTCCGATCTGAT
* * ** * *
18196040 CTTAGAC-TGGGAATGAACT-CGTATGCCTAGGTCAACCCACGAAATGAGCGTTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * *
18196103 CCAATCGGAGAGGCATAATACGCAAG-TCGAGGGATCGACCCGGTCC-C-CCTATGCGTGCTATC
65 CCAACCGGAGAGGCAGAATACACAAGCT-G-GGGATCGACCCGATCCTCTCCTAT--GTGCTATC
* *
18196165 GGTCCCGCTGCCACAACCCTC-AGTCCGGCTT-AGGCTTAGACATGGAATGAACTCCCTATGCCT
126 GGTCCCACTACCACAACCCTCGA-TCCGG-TTGAGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * *
18196228 AAGCCAGCCCACAAAACGGGCGTACGGGCGCTCAGCCTG-CCGGAGGGGCAGAATGAGCAAGCCA
189 AAGCCA-CCCACAAAACGGGCGTACGGCCGCTCAACC-GACCAGAGAGGCAGAATGAGCAAGCCA
* * ** *
18196292 GGGATCGGCCCGAT-CCGCCTGCATGCTATCGATCCTGCTACCGGAACCCTCAGTCCTATCCGAT
252 GGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCTACTACCACAACCCTCAGTCCGATCCGAT
* *
18196356 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCATATGCC
317 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATAAACTCCATATGCC
18196410 TAAGTCAACC
Statistics
Matches: 306, Mismatches: 55, Indels: 18
0.81 0.15 0.05
Matches are distributed among these distances:
416 5 0.02
417 60 0.20
418 183 0.60
419 57 0.19
420 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (418 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
CAACCGGAGAGGCAGAATACACAAGCTGGGGATCGACCCGATCCTCTCCTATGTGCTATCGGTCC
CACTACCACAACCCTCGATCCGGTTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAC
CCACAAAACGGGCGTACGGCCGCTCAACCGACCAGAGAGGCAGAATGAGCAAGCCAGGGATCGGC
CCGATCCCCCCTGCATGCTATCGATCCTACTACCACAACCCTCAGTCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGAGATAAACTCCATATGCCCCCTACGTGCTGTCGATCCT
ACTACTGTAACCCTCAGTCCGATCTGAT
Found at i:18196690 original size:196 final size:196
Alignment explanation
Indices: 18196354--18196712 Score: 436
Period size: 196 Copynumber: 1.8 Consensus size: 196
18196344 GTCCTATCCG
* * *
18196354 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCATATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCATATGCCTAAGCCAAC
* * * * * ** *
18196419 CCATGAAATGAGCGTGCGGGCGCTCAGCTAATTGGAGAGGCAGAATGCACAAGCCGAGGATCACC
66 CCACGAAACGAGCGTACGGGCACTCAGCCAATCAGAGAGGCAGAATGCACAAGCCGAGGAACACC
* * *
18196484 CCGGTCCCCCCTATGTGCTGTCGATCCTGCTACTGGTCCTGCTGCCGTGAGCCTCGGTCCAGTCC
131 CCGATCCCCCCTACGTGCTATCGATCCTGCTACTGGTCCTGCTGCCGTGAGCCTCGGTCCAGTCC
18196549 A
196 A
* **
18196550 ATCTTAGACTGGGAATGAACTCCATATGCTTATACATGGA-ATGAACTCTGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGAGATGAACTCCATATGCCTAAGCCAA
* ** * ** *
18196614 CCCACGAAACGAGCGTATGGGCACTCAGCCGGTCAGAGAGGTAGAATGTGCAA-CCTGGGGAACG
65 CCCACGAAACGAGCGTACGGGCACTCAGCCAATCAGAGAGGCAGAATGCACAAGCC-GAGGAAC-
* *
18196678 A-CCTGATCCCCCCTGCGTGCTATCGATCCTGCTAC
128 ACCCCGATCCCCCCTACGTGCTATCGATCCTGCTAC
18196713 CGCAACCGTC
Statistics
Matches: 134, Mismatches: 26, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
195 2 0.01
196 127 0.95
197 5 0.04
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (196 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCATATGCCTAAGCCAAC
CCACGAAACGAGCGTACGGGCACTCAGCCAATCAGAGAGGCAGAATGCACAAGCCGAGGAACACC
CCGATCCCCCCTACGTGCTATCGATCCTGCTACTGGTCCTGCTGCCGTGAGCCTCGGTCCAGTCC
A
Found at i:18196866 original size:21 final size:21
Alignment explanation
Indices: 18196837--18196879 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
18196827 AGGATCCGTC
*
18196837 CGGTGCCCCTCTGCATGCTGT
1 CGGTCCCCCTCTGCATGCTGT
**
18196858 CGGTCCCCCTCTGTGTGCTGT
1 CGGTCCCCCTCTGCATGCTGT
18196879 C
1 C
18196880 AGTCTCGCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.40, G:0.28, T:0.30
Consensus pattern (21 bp):
CGGTCCCCCTCTGCATGCTGT
Found at i:18197563 original size:157 final size:154
Alignment explanation
Indices: 18197107--18197601 Score: 433
Period size: 157 Copynumber: 3.1 Consensus size: 154
18197097 AACTCGATAT
* * * * *
18197107 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCTTACGGGCGCTTAG
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * *
18197172 CCAGCTAGAGATGCAAAATACGTAAGCTGGGGATCGGCCCGG-TCCCCTCAGTGTGTTGTTGATC
65 CGA-CCAGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCTGGTTCCCCT--GCGTGCTG-TGATC
* *
18197236 CTGCTGTCGCAACTCTCGGT-CTAGTTCGA
126 CTGCTGTCGCAACCCTCGGTCCGA-TTCGA
* * * * * *
18197265 TCTTAGAC-GAGAATGAACTCCATACGCCTAAGTCAA-CCACGAAACGAGCGTATGGGTGCTGAG
1 GCTTAGACTG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * * * * *
18197328 CCGGTCAGAGAGGCATAATGCGCAAGCTGGGGATC-GACTCGATCTCCCTTGCGCGCTGTCGGTC
65 -CGACCAGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCT-GGT-TCCCCTGCGTGCTGT-GATC
** * * * *
18197392 CCACTGTCACAACCCTCGGTCCGACTAGG
126 CTGCTGTCGCAACCCTCGGTCCGATTCGA
* * *
18197421 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
18197486 TCGACCGGAGAGGCAGAATGCGCAAGCTGAGTATCGGCCTGGTTCCCCTGCGTGCTGCTGATCCT
65 -CGACCAGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCTGGTTCCCCTGCGTGCTG-TGATCCT
18197551 GCTGTCGCAACCCTCGGTCCGATTCGA
128 GCTGTCGCAACCCTCGGTCCGATTCGA
*
18197578 TCTTAGACTGGGAATGAACTCCAT
1 GCTTAGACT-GGAATGAACTCCAT
18197602 CTGCTTAGAC
Statistics
Matches: 261, Mismatches: 63, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
155 3 0.01
156 82 0.31
157 107 0.41
158 66 0.25
159 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (154 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
GACCAGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCTGGTTCCCCTGCGTGCTGTGATCCTGCT
GTCGCAACCCTCGGTCCGATTCGA
Found at i:18197610 original size:26 final size:26
Alignment explanation
Indices: 18197579--18197634 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18197569 CCGATTCGAT
*
18197579 CTTAGACTGGGAATGAACTCCATCTG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18197605 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18197631 CTTA
1 CTTA
18197635 AATCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18198783 original size:26 final size:26
Alignment explanation
Indices: 18198742--18198797 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
18198732 TCTGGTCGAT
18198742 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18198768 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
18198794 CTTA
1 CTTA
18198798 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18199636 original size:26 final size:26
Alignment explanation
Indices: 18199607--18199659 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18199597 CCGATCTGAT
18199607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18199633 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18199659 C
1 C
18199660 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18199991 original size:26 final size:26
Alignment explanation
Indices: 18199962--18200014 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18199952 CCGATCTGAT
*
18199962 CTTAG-ACTGGGAATGAACTCCGTATG
1 CTTAGAAC-GGGAATGAACTCCATATG
*
18199988 CTTAGAACGGGGATGAACTCCATATG
1 CTTAGAACGGGAATGAACTCCATATG
18200014 C
1 C
18200015 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGAACGGGAATGAACTCCATATG
Found at i:18200351 original size:26 final size:26
Alignment explanation
Indices: 18200313--18200365 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18200303 CTGGTCTGAT
*
18200313 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
*
18200339 CTTAGAC-ATGGAATGAAATTCGTATG
1 CTTAGACTA-GGAATGAAATCCGTATG
18200365 C
1 C
18200366 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:18201540 original size:159 final size:158
Alignment explanation
Indices: 18201203--18201705 Score: 507
Period size: 158 Copynumber: 3.2 Consensus size: 158
18201193 AACTCCGTAC
* * * * *
18201203 GCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
18201268 TCGGCCGGAGAGGCAAAATACGTAAGCTGGGGATCGGCCCAGTCCCCC-CTGTGTGCTGTTGATC
66 TCGGCCGGAGAGGCAAAATGCGTAAGC-GGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATC
*
18201332 CTGCTGCCGCAACCCTCGGTCCGGTCTGA
130 CTGCTGCCACAACCCTCGGTCCGGTCTGA
* * * * * *
18201361 TCTTAGAC-TGGGAATTAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * * *
18201425 GCCGGTCGGAAAGGCCTAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGGT
65 GTCGGCCGGAGAGGCAAAATGCGTAAG-CGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGAT
* *
18201490 -CTCGCTGCCACAACCCTCGGTCTGGT-TGGG
129 CCT-GCTGCCACAACCCTCGGTCCGGTCT-GA
* * * *
18201520 GCTTAGACATGGAATGAACTCCCTATGCCTACGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
18201585 TCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCT-TACGTGTTACCGATC
66 TCGGCCGGAGAGGCAAAATGCGTAAG-CGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATC
* * *
18201649 TTGCTGCCGCAACCCTCGGTCCGAT-TCGA
130 CTGCTGCCACAACCCTCGGTCCGGTCT-GA
* *
18201678 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18201706 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 60, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 145 0.52
159 129 0.47
160 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGCAAAATGCGTAAGCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGGTCTGA
Found at i:18201730 original size:26 final size:26
Alignment explanation
Indices: 18201679--18201731 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18201669 CCGATTCGAT
* *
18201679 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18201705 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18201731 C
1 C
18201732 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18203252 original size:3 final size:3
Alignment explanation
Indices: 18203231--18203340 Score: 54
Period size: 3 Copynumber: 35.3 Consensus size: 3
18203221 TCTTCTTTTG
18203231 TAT T-T TAT GTAT T-T TAT TAT TAT TAT TAT TAT TAT TAT GTAT ATATT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TA-T
* *
18203278 TATT TAT T-T T-T TAT TA- GAT TA- GAT T-T ATAT GTAT ATAGT TAT
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT -TA-T TAT
18203320 ATATT TAT TAT TAT TAT TAT T
1 -TA-T TAT TAT TAT TAT TAT T
18203341 TTTTTTTTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 26
0.73 0.06 0.22
Matches are distributed among these distances:
2 11 0.13
3 47 0.54
4 26 0.30
5 3 0.03
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:18203389 original size:3 final size:3
Alignment explanation
Indices: 18203381--18203406 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
18203371 ATCTTATTTT
18203381 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
18203407 TTTAATTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:18203929 original size:20 final size:20
Alignment explanation
Indices: 18203906--18203950 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
18203896 TGCCCAGTTT
*
18203906 CCGGCGAGGAATCCCAGAAA
1 CCGGCGAAGAATCCCAGAAA
* *
18203926 CCGGCGAATATTCCCAGAAA
1 CCGGCGAAGAATCCCAGAAA
18203946 CCGGC
1 CCGGC
18203951 CGACTTCCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.33, G:0.27, T:0.09
Consensus pattern (20 bp):
CCGGCGAAGAATCCCAGAAA
Found at i:18204358 original size:11 final size:11
Alignment explanation
Indices: 18204344--18204373 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
18204334 TTTTTTTTTT
18204344 TTTTTTTTGAA
1 TTTTTTTTGAA
18204355 TTTTTTTTGAA
1 TTTTTTTTGAA
18204366 TTTTTTTT
1 TTTTTTTT
18204374 TATTTCTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:18204378 original size:21 final size:20
Alignment explanation
Indices: 18204369--18204418 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
18204359 TTTTGAATTT
*
18204369 TTTTTTA-TTTCTTTGTTTA
1 TTTTTTATTTTATTTGTTTA
18204388 TTTGTTTATTTTATTTGTTTA
1 TTT-TTTATTTTATTTGTTTA
18204409 TTTTTTATTT
1 TTTTTTATTT
18204419 ATTAGATTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 3 0.11
20 11 0.39
21 14 0.50
ACGTcount: A:0.12, C:0.02, G:0.06, T:0.80
Consensus pattern (20 bp):
TTTTTTATTTTATTTGTTTA
Found at i:18204393 original size:8 final size:8
Alignment explanation
Indices: 18204380--18204418 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
18204370 TTTTTATTTC
18204380 TTTGTTTA
1 TTTGTTTA
18204388 TTTGTTTA
1 TTTGTTTA
18204396 --T-TTTA
1 TTTGTTTA
18204401 TTTGTTTA
1 TTTGTTTA
18204409 TTT-TTTA
1 TTTGTTTA
18204416 TTT
1 TTT
18204419 ATTAGATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
5 4 0.14
6 1 0.04
7 8 0.29
8 15 0.54
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (8 bp):
TTTGTTTA
Found at i:18204402 original size:13 final size:13
Alignment explanation
Indices: 18204371--18204412 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
18204361 TTGAATTTTT
*
18204371 TTTTATTTCTTT-
1 TTTTATTTGTTTA
*
18204383 GTTTATTTGTTTA
1 TTTTATTTGTTTA
18204396 TTTTATTTGTTTA
1 TTTTATTTGTTTA
18204409 TTTT
1 TTTT
18204413 TTATTTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.79
Consensus pattern (13 bp):
TTTTATTTGTTTA
Found at i:18204571 original size:60 final size:59
Alignment explanation
Indices: 18204498--18204964 Score: 606
Period size: 60 Copynumber: 7.7 Consensus size: 59
18204488 AAAAAATTCT
18204498 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCA
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCA
18204557 AAATAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC-
1 AAA-AAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCA
* * * * *
18204616 AAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAAAAATTTTCAA
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTCCA
18204676 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCC-
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTTCCA
18204739 -AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCCAA
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTTCC--
18204803 A
59 A
* *
18204804 AAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCA
1 AAAAAAA-TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCA
****
18204864 AAAAAGGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTCC-
1 AAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTCCA
*
18204924 -AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
18204965 CTAAAAAAAT
Statistics
Matches: 369, Mismatches: 21, Indels: 36
0.87 0.05 0.08
Matches are distributed among these distances:
58 48 0.13
59 82 0.22
60 103 0.28
61 7 0.02
62 73 0.20
63 2 0.01
64 6 0.02
65 6 0.02
66 6 0.02
67 36 0.10
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (59 bp):
AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCA
Found at i:18204635 original size:118 final size:119
Alignment explanation
Indices: 18204498--18204964 Score: 653
Period size: 118 Copynumber: 3.9 Consensus size: 119
18204488 AAAAAATTCT
* *
18204498 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAATAAATTTCCAAAATA
1 AAAAAAGTATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTCCAAAAAA
18204562 AAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
66 AAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
* * *
18204616 AAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAA-AAATTTTCAAAAAA
1 AAAAAAGTATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTCCAAAAAA
18204680 AAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCC
66 AAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTTCC
18204739 AAAAAA-TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCCAA
1 AAAAAAGTATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG-AAAATAAATTTCC-A
* *
18204803 AAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
61 AAAAAAAA-TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
**
18204863 AAAAAAGGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTCC--
1 AAAAAA-GTATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAAT--AAATTTCCAA
*
18204924 -AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
62 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
18204965 CTAAAAAAAT
Statistics
Matches: 319, Mismatches: 12, Indels: 36
0.87 0.03 0.10
Matches are distributed among these distances:
118 130 0.41
119 9 0.03
121 7 0.02
122 36 0.11
123 26 0.08
124 17 0.05
125 3 0.01
126 39 0.12
127 7 0.02
128 9 0.03
129 36 0.11
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (119 bp):
AAAAAAGTATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTCCAAAAAA
AAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
Found at i:18204930 original size:247 final size:239
Alignment explanation
Indices: 18204499--18204970 Score: 725
Period size: 247 Copynumber: 1.9 Consensus size: 239
18204489 AAAAATTCTA
*
18204499 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAATAAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAAA
*
18204564 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAGTATTTT
66 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAGGATTTT
*
18204629 TGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAAAAATTTTCAAAAAAAAATATTTTTAGGG
131 TGAGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAAAAATTTTC-AAAAAAAATATTTTTAGGG
*
18204694 AAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCC
195 AAAAGTTGAAAGTATCAATTTTCCCTAAAAGAAAAATAAATTTCC
18204739 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCCAAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTTCC-AA
* *
18204804 AAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAA
60 AAAAAAA-TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAA
* * *
18204869 GGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TGAAAATCGAAA-TTTC-CAAAAAAT
124 -GGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAA---AAATTTTCAAAAAAAAT
*
18204931 ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCCTAAAA
185 ATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCCTAAAA
18204971 AAATCATTCT
Statistics
Matches: 211, Mismatches: 10, Indels: 15
0.89 0.04 0.06
Matches are distributed among these distances:
240 43 0.20
243 2 0.01
245 12 0.06
246 8 0.04
247 105 0.50
248 34 0.16
249 4 0.02
250 3 0.01
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (239 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAAA
ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAGGATTTT
TGAGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAAAAATTTTCAAAAAAAATATTTTTAGGGA
AAAGTTGAAAGTATCAATTTTCCCTAAAAGAAAAATAAATTTCC
Found at i:18206012 original size:26 final size:26
Alignment explanation
Indices: 18205983--18206035 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18205973 CTGATCCGAT
*
18205983 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18206009 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18206035 C
1 C
18206036 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18206277 original size:158 final size:157
Alignment explanation
Indices: 18206009--18206510 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 157
18205999 ACTCTGTATG
* * * *
18206009 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAATGAGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGC
* * * *
18206074 C-ATCCAGAGAGGCAGAATGTGCAAGCCAGGGA-CTGGCTCGATCCCCCCTGTGTGCTGTCGATC
66 CGGT-CGGAGAGGCAGAATGTGTAAGTCAGGGATC-GGCTCGATCCCCCCTGTGTGCTGTCGATC
* *
18206137 CTACTGCAGCAACCCTCAGTCTGGTCTGAT
129 CTGCTGC-GCAACCCTCGGTCTGGTCTGAT
* * * *
18206167 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
* * * * * * *
18206231 CCGGTCGGAGAGGCATAATGCGTAAGTCGGGGATCGGTTCGGTCCCCCTCTGTGTGCTGCCGGTC
65 CCGGTCGGAGAGGCAGAATGTGTAAGTCAGGGATCGGCTCGATCCCCC-CTGTGTGCTGTCGATC
* * **
18206296 CTGCTGCGACAACCCTTGGTCCGGT-TGGGG
129 CTGCTGCG-CAACCCTCGGTCTGGTCT-GAT
* ** *
18206326 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGACGTACGGGCACTCAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTACGGGTGCTCAG
* * * * ** *
18206390 CCGGTCGGAGAGGTAGAATGTGTAATTCAGGGATCGGCCCGATCCACCCTGCATGCTATCGATCC
65 CCGGTCGGAGAGGCAGAATGTGTAAGTCAGGGATCGGCTCGATCCCCCCTGTGTGCTGTCGATCC
* * *
18206455 TGCTGCCGTAACCCTCGGTCTGCTCTGCT
130 TGCTG-CGCAACCCTCGGTCTGGTCTGAT
18206484 CTTAGAC-TGAGAATGAACTCCGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
18206511 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 53, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 147 0.52
159 129 0.46
160 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGC
CGGTCGGAGAGGCAGAATGTGTAAGTCAGGGATCGGCTCGATCCCCCCTGTGTGCTGTCGATCCT
GCTGCGCAACCCTCGGTCTGGTCTGAT
Found at i:18206518 original size:26 final size:26
Alignment explanation
Indices: 18206484--18206536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18206474 CTGCTCTGCT
18206484 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
18206510 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18206536 C
1 C
18206537 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18206903 original size:26 final size:26
Alignment explanation
Indices: 18206864--18206916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18206854 CCAGTCTGAT
*
18206864 CTTAGACTGAGAATGAATTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18206890 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
18206916 C
1 C
18206917 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18207415 original size:26 final size:26
Alignment explanation
Indices: 18207365--18207417 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18207355 CCGATCTGAT
**
18207365 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
18207391 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
18207417 C
1 C
18207418 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:18207534 original size:184 final size:184
Alignment explanation
Indices: 18207208--18207621 Score: 539
Period size: 184 Copynumber: 2.2 Consensus size: 184
18207198 CAGCTAGGGT
* * * * *
18207208 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGCGCAGACGCTCAGCC
1 TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGGGCGCGCAGACGCTCAGCC
* *
18207273 GGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCCCTCCGTGCTGTTGATCCTG
66 GGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCCCTCCGTGCAGTCGATCCTG
* * * *
18207338 CTACCACAACCCTCAGTCCGA-TCTGATCTTAGATTGGGAATGAACTTTGTATGC
131 CTACCACAACCCTCAGTCCAATTC-AATCTTAGACTGGGAATGAACTTCGTATGC
* * ** *
18207392 TTAGA-TTGGGGATGAACTCCGTATGCCTATGTCAACCCACGAAACGGGCTTGCAGGCGCTCAGC
1 TTAGACTT-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGGGCGCGCAGACGCTCAGC
* * * * *
18207456 CGGTCGGAGAGGCAGAATGCGTAAGCC-AGGGATCGGCCCT-GTCCCCCCTGCGTGCAGTCGATC
65 CGGCCAGAGAGGCAGAATGCGCAAGCCGA-GGATC-GACCTAGTCCCCCCTCCGTGCAGTCGATC
* * *
18207519 CTGCTGCCGCAACCCTCGGTCCAATTCAATCTTAGACTGGGAATGAACTTCGTATGC
128 CTGCTACCACAACCCTCAGTCCAATTCAATCTTAGACTGGGAATGAACTTCGTATGC
*
18207576 TTAGACTTGGGATGAACTCCGTATGACTAAGTCAACCCATGAAACG
1 TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
18207622 AGCGTACGGG
Statistics
Matches: 198, Mismatches: 27, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
183 2 0.01
184 188 0.95
185 8 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGGGCGCGCAGACGCTCAGCC
GGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCCCTCCGTGCAGTCGATCCTG
CTACCACAACCCTCAGTCCAATTCAATCTTAGACTGGGAATGAACTTCGTATGC
Found at i:18207590 original size:26 final size:26
Alignment explanation
Indices: 18207549--18207600 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18207539 CCAATTCAAT
*
18207549 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18207575 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18207601 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18207787 original size:26 final size:26
Alignment explanation
Indices: 18207758--18207810 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18207748 CTGGTCCGAT
*
18207758 CTTAGAC-TGGCAATGTACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
18207784 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18207810 C
1 C
18207811 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18208040 original size:894 final size:870
Alignment explanation
Indices: 18205977--18208335 Score: 2138
Period size: 881 Copynumber: 2.7 Consensus size: 870
18205967 GTCCTGCTGA
*
18205977 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * *
18206042 CAGCCCATGAAATGAGTGTGCGGGTGCTCAGCCATCCAGAGAGGCAGAATGTGCAAGCCAGGGAC
65 CAACCCACGAAATGAGCGTGCGGGTGCTCAGCCAT-CAGAAAGGCAGAATGCGCAAGCCAGGGAC
* * *
18206107 TGGCTCGATCCCCCCTGTGTGCTGTCGATCCTACTGCAGCAACCCTCAGTCTGGTCTGATCTTAG
129 TGACTCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTC-GTCTGGTCTGATCTTAG
* * * * *
18206172 ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGTTGAGCCGGTC
193 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTT-TGGCGTTGAGCCGATC
* ** * ** *
18206237 GGAGAGGCATAATGCGTAAGTCGGGGATCGGTTCGGTCCCCCTCTGTGTGCTGCCGGTCCTGCTG
257 GGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGAT-CCCCTCTACGTGCTGCCGGTCCTGCTA
* * * *
18206302 CGACAACCCTTGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
321 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * * * * ** * *
18206367 GAAACAGACGTACGGGCACTCATCCGGTCGGAGAGGTAGAATGTGTAATTCAGGGATCGGCCCGA
386 GAAACAGACGCACAGACACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGA
* * ** * * * *
18206432 TCCACCCTGCATGCTATCGATCCTGCTGCCGTAACCCTCGGTCTGCTCTGCTCTTAGACTGAGAA
451 TCCACCCTCCATGCTATCGATCCTGCTACCACAACCCTCAGTCCGATCTGATCTTAGACTGAGAA
* *
18206497 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGT
516 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * *
18206562 GCGGGTGTTCAACCAATCAGAGAGGCCGATCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCT
581 GCGAGTG-TC-ACC-ATC--A-AGGCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCT
* * * * ** * ** *
18206627 GTTCCCCCTCTGTGTGCTGTCGATCCCATTGCTAGTCCTGCTGCCATAACTCTTGGTCCGACTGG
640 GTTCCCCCTCTGCGTGCAGTCGATCCCACTGCCAACCCTGCTGCCATAACTCTGGGAACGACTGA
* * * * *
18206692 GGCTTAGACATGGAATAAACTCCGTCTGCCTAAGCCAACCTACGAAACGAGCATGCGGGCGCTTA
705 GGCTTAGACATGGAATAAACTCCGTATGACTAAGCCAACCCACGAAACGAGCATACGGGCGATTA
* * * *
18206757 ACCGACCGGAGAGGCAGAATAAGTAAGCCGGGGACCGGCCCGGTCCCCCTTGCGTGCTGTCGATC
770 ACCGACCGGAGAGGCAGAATAAGCAAGCCGAGGACCAGCCCGGTCCCCCTTGCGTGCTATCGATC
*
18206822 CTGCTACTGGTCCTACAGTCACAACCCTTGATCCAG
835 CTGCTACTGGTCCTACAGTCACAACCCTAGATCCAG
* *
18206858 TCTGATCTTAGACTGAGAATGAATTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCCGATCTTAGACTG-GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* ** * * ** *
18206923 CAACCCACGGAACAAGCGTGCGGGTGCTCAGCCAACTGAAGACACAGAATGCGCAAGCAAGGGAC
65 CAACCCACGAAATGAGCGTGCGGGTGCTCAGCCATCAGAA-AGGCAGAATGCGCAAGCCAGGGAC
* ** * * * *
18206988 TGACCCGATCCCGTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTAATCTTAG
129 TGACTCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCG-TCTGGTCTGATCTTAG
* * * * * * * * *
18207053 ATTGGGAATAAACTTCATATGCCTAAGTCAACTCACGAAATGAGCATGCTGGCGTTGAGCCGACC
193 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-TTGGCGTTGAGCCGATC
* *
18207118 GAACAGGCATAATGCGTAAGTCGGGGATCAGCCCGATCCCTCTCTACGTGCTGCCGGTCCTGCTA
257 GGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGATCCC-CTCTACGTGCTGCCGGTCCTGCTA
* * *
18207183 CCATAACCCTCGGTCCAGCTAGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
321 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
** * * *
18207248 GAAATGGGCGCGCAGACGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCC-GAGGATCGACCTA
386 GAAACAGACGCACAGACACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAG-GGATCGACC-A
* * * * * *
18207312 G-TCCCCCCTCCGTGCTGTTGATCCTGCTACCACAACCCTCAGTCCGATCTGATCTTAGATTGGG
449 GATCCACCCTCCATGCTATCGATCCTGCTACCACAACCCTCAGTCCGATCTGATCTTAGACTGAG
** * * *
18207376 AATGAACTTTGTATGCTTAGATTGGGGATGAACTCCGTATGCCTATGTCAACCCACGAAACGGGC
514 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
18207441 TTGC-AG-G-C-GC-TC-A-GCCGGTCGGAGAGGCAGAATGCGTAAGCC-AGGGATCGGCCCTG-
579 GTGCGAGTGTCACCATCAAGGCCGATCGGAGAGGCAGAATGCGTAAGCCGA-GGATCAG-CCTGT
** *
18207497 TCCCCC-CTGCGTGCAGTCGATCCTGCTGCCGCAACCCT-CGGTCCAATTCAATCTTAGACTGGG
642 TCCCCCTCTGCGTGCAGTCGATCCCACTG-C-CAACCCTGCTG-CC-A-T-AA-C-T---CTGGG
* * * * * * *
18207560 AATGAACTTCGTATGCTTAGACTTGGGATGAACTCCGTATGACTAAGTCAACCCATGAAACGAGC
696 AACG-AC-T-G-AGGCTTAGACATGGAATAAACTCCGTATGACTAAGCCAACCCACGAAACGAGC
* * * * *
18207625 GTACGGGC-ATTCAACCGGCCGGAGAAGCCAGTTGGAGAGGTAGAATATGCAAGCCGAGGATCAT
757 ATACGGGCGATT-AA----CC---G-A-CC----GGAGAGGCAGAATAAGCAAGCCGAGGACCAG
* * * * * **
18207689 CCCGGTACCCCC-TGTGTGCTATCGATCCTGCTACTGTTCCTGCTGTCGCAACCCTCAG-TCTGG
808 CCCGGT-CCCCCTTGCGTGCTATCGATCCTGCTACTGGTCCTACAGTCACAACCCT-AGATCCAG
*
18207752 TCCGATCTTAGACTGGCAATGTACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * ** * * *
18207817 TAACCCACAAAATGAGCGTGCGGACGCTCAGCCAGTCGGAAAGGCAGAATACACAAGCC-GAGGA
65 CAACCCACGAAATGAGCGTGCGGGTGCTCAGCCA-TCAGAAAGGCAGAATGCGCAAGCCAG-GGA
* * * *
18207881 -TCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTTCTACCGCAACCCTCTGTCTGGTCCGATCTT
128 CT-GACTCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTC-GTCTGGTCTGATCTT
* ** * *
18207945 AGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACGAAACGAGCGTTTGAGCACTAAGTCGA
191 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTG-GCGTTGAGCCGA
* ** * * ** *
18208010 TCGGAGAGGCATAATACGTAAG-CTGGGGATCCTCCTGATCCCCTTATACGTGCTGTTGGTCCCG
255 TCGGAGAGGCATAATGCGTAAGTC-GGGGATCAGCCCGATCCCC-TCTACGTGCTGCCGGTCCTG
* * *
18208074 CTACCACAACCCTCAGTTCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACC
318 CTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
** * * * *** * * * * * * ** *
18208139 CACAAAACGGGCGTGA-AGGTGCTCTGCAGGTCGGAGAGGTAGAATGCACAAGCTGGGGATCGGC
383 CATGAAACAGACG-CACAGACACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
* ** * * * ** *
18208203 CCGATCC-CCCTTGTATGCTACCGATCCTTCTATCGTAA-CCTC-GATCCGATAC-AATCTTAGA
447 CAGATCCACCC-TCCATGCTATCGATCCTGCTACCACAACCCTCAG-TCCGAT-CTGATCTTAGA
* * * * * *
18208264 CTGGGAATGAACTCCATTTGCTTAGACAGAGGATGAACTCTGTATGCCTAAGTCAACCCACGAAA
509 CTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
*
18208329 CAAGCGT
574 CGAGCGT
18208336 ATGGACGCTC
Statistics
Matches: 1183, Mismatches: 241, Indels: 96
0.78 0.16 0.06
Matches are distributed among these distances:
867 18 0.02
868 41 0.03
869 11 0.01
870 1 0.00
871 1 0.00
872 2 0.00
873 3 0.00
874 1 0.00
875 1 0.00
877 6 0.01
878 2 0.00
879 2 0.00
880 13 0.01
881 525 0.44
882 1 0.00
885 2 0.00
888 1 0.00
889 1 0.00
890 2 0.00
892 1 0.00
893 88 0.07
894 448 0.38
895 12 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (870 bp):
TCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAATGAGCGTGCGGGTGCTCAGCCATCAGAAAGGCAGAATGCGCAAGCCAGGGACTG
ACTCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGTCTGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTGGCGTTGAGCCGATCGGAG
AGGCATAATGCGTAAGTCGGGGATCAGCCCGATCCCCTCTACGTGCTGCCGGTCCTGCTACCACA
ACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
AGACGCACAGACACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGATCCAC
CCTCCATGCTATCGATCCTGCTACCACAACCCTCAGTCCGATCTGATCTTAGACTGAGAATGAAC
TCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAG
TGTCACCATCAAGGCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCTGTTCCCCCTCT
GCGTGCAGTCGATCCCACTGCCAACCCTGCTGCCATAACTCTGGGAACGACTGAGGCTTAGACAT
GGAATAAACTCCGTATGACTAAGCCAACCCACGAAACGAGCATACGGGCGATTAACCGACCGGAG
AGGCAGAATAAGCAAGCCGAGGACCAGCCCGGTCCCCCTTGCGTGCTATCGATCCTGCTACTGGT
CCTACAGTCACAACCCTAGATCCAG
Found at i:18213918 original size:26 final size:26
Alignment explanation
Indices: 18213869--18213921 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18213859 CCGGTTCGAT
* * *
18213869 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
18213895 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18213921 C
1 C
18213922 CCCCTGTGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18214338 original size:26 final size:26
Alignment explanation
Indices: 18214287--18214339 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18214277 CCTATCCGAT
* **
18214287 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18214313 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18214339 C
1 C
18214340 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18214512 original size:26 final size:26
Alignment explanation
Indices: 18214483--18214535 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18214473 CCGGTCCGAT
18214483 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
18214509 CTTATACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18214535 C
1 C
18214536 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18214638 original size:196 final size:196
Alignment explanation
Indices: 18214281--18214643 Score: 426
Period size: 196 Copynumber: 1.9 Consensus size: 196
18214271 CTCAGTCCTA
* * * *
18214281 TCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGC
* * * * * * * * *
18214346 TAACCCATGAAATGAGCGTGCGGGCGCTCAGCTGATTGGAGAGGCAGAATGCACAAGCCGAGGAT
66 CAACCCACGAAACGAACGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGAGGAA
* * **
18214411 CACCCCGGTCCCTCCTATGTGCTACCGATCCTGCTACTGGTCCTGCTGCCGTGAGCCTCGGTCCG
131 CACCCCGATCCCCCCTACATGCTACCGATCCTGCTACTGGTCCTGCTGCCGTGAGCCTCGGTCCG
18214476 G
196 G
* **
18214477 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTATACAT-GGAATGAACTCTGTATGCCTAAG
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAG
* * * ** *
18214541 CCAACCCACGAAACGAACGTATGGGCACTCAGCCGGTCGGAGAGGTAGAATGTGCAA-CTCGGGG
65 CCAACCCACGAAACGAACGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGC-CGAGG
* *
18214605 AACGA-CCCGATCCCCCCTGCATGCTATCGATCCTGCTAC
129 AAC-ACCCCGATCCCCCCTACATGCTACCGATCCTGCTAC
18214644 CGCAACCATC
Statistics
Matches: 136, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
195 1 0.01
196 133 0.98
197 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (196 bp):
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGC
CAACCCACGAAACGAACGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGAGGAA
CACCCCGATCCCCCCTACATGCTACCGATCCTGCTACTGGTCCTGCTGCCGTGAGCCTCGGTCCG
G
Found at i:18215544 original size:26 final size:26
Alignment explanation
Indices: 18215513--18215568 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18215503 CCGGGTCGAT
*
18215513 CTTAGACTGAGAATGAACTCCATCTG
1 CTTAGACTGAGAATGAACTCCATATG
* *
18215539 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18215565 CTTA
1 CTTA
18215569 AATCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18216690 original size:159 final size:158
Alignment explanation
Indices: 18216261--18216764 Score: 468
Period size: 159 Copynumber: 3.2 Consensus size: 158
18216251 AACTCCGTAT
* *
18216261 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18216326 CCGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGGTCTGCCCCTACGTGCTGTCGATT
66 CCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTC-CCCCCTACGTGCTGTCGATC
* ***
18216391 CTGCTGTTGCAACCCTCAGTTCGATCTGG
130 CCGCTGCCACAACCCTCAGTTCGATCTGG
* * * * *
18216420 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * *
18216484 GCAGGTCGAAGAGGCATAATGTGCAAGCCCA-GAATCAGCCTGATCCCCCTCTGCTTGCTG-CAG
65 GCCGGCCGGAGAGGCAGAATGTGCAAG-CCAGGGATCGGCCCGGTCCCCC-CTACGTGCTGTC--
* *
18216547 GA-CCCGCTGCCACAACCCTC-GGTCTGGT-TGGG
126 GATCCCGCTGCCACAACCCTCAGTTC-GATCT-GG
* * *
18216579 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAGCCCACGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * * *
18216643 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACATGCTATCGATC
65 GCCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
** * * * *
18216708 TTGCTGCCACAACCCTCTG-TCTGGTCCGA
130 CCGCTGCCACAACCCTCAGTTC-GATCTGG
*
18216737 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18216765 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 56, Indels: 31
0.76 0.16 0.09
Matches are distributed among these distances:
157 3 0.01
158 64 0.23
159 201 0.73
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
CGCTGCCACAACCCTCAGTTCGATCTGG
Found at i:18216767 original size:26 final size:26
Alignment explanation
Indices: 18216738--18216793 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
18216728 CTGGTCCGAT
18216738 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
18216764 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
18216790 CTTA
1 CTTA
18216794 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:18217631 original size:26 final size:26
Alignment explanation
Indices: 18217602--18217654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18217592 CCGATCTGAT
18217602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18217628 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18217654 C
1 C
18217655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18217987 original size:26 final size:26
Alignment explanation
Indices: 18217958--18218010 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18217948 CCGATCTGAT
18217958 CTTAG-ACTGGGAATGAACTCCGTATG
1 CTTAGAAC-GGGAATGAACTCCGTATG
*
18217984 CTTAGAACGGGGATGAACTCCGTATG
1 CTTAGAACGGGAATGAACTCCGTATG
18218010 C
1 C
18218011 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGAACGGGAATGAACTCCGTATG
Found at i:18218339 original size:26 final size:26
Alignment explanation
Indices: 18218302--18218361 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
18218292 CCTCAGTCTG
18218302 CTCCG-AT-CTTAGACTAG-GAACGAA
1 CTCCGTATGCTTAGACTAGCG-ACGAA
*
18218326 CTCCGTATGCTTAGACTAGCGATGAA
1 CTCCGTATGCTTAGACTAGCGACGAA
18218352 CTCCGTATGC
1 CTCCGTATGC
18218362 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.75
27 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (26 bp):
CTCCGTATGCTTAGACTAGCGACGAA
Found at i:18218623 original size:27 final size:26
Alignment explanation
Indices: 18218567--18218622 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18218557 CCGTTTTCTA
* *
18218567 TTTTGTGGTTCGGGATTTTTTAAAGT
1 TTTTATGGTTCAGGATTTTTTAAAGT
*
18218593 TTTTATGGTTCAGGATTTTTTAAAAT
1 TTTTATGGTTCAGGATTTTTTAAAGT
18218619 TTTT
1 TTTT
18218623 TTAGAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.20, C:0.04, G:0.20, T:0.57
Consensus pattern (26 bp):
TTTTATGGTTCAGGATTTTTTAAAGT
Found at i:18219074 original size:26 final size:26
Alignment explanation
Indices: 18219036--18219085 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18219026 GGTTCAAAAT
18219036 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
18219062 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
18219086 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:18220079 original size:157 final size:155
Alignment explanation
Indices: 18219594--18220088 Score: 411
Period size: 157 Copynumber: 3.1 Consensus size: 155
18219584 ACTCGATATG
* * * * *
18219594 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTACGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * * *
18219659 CAGCTGGAGACGTAAAATACGTAAGCTGGGGATCGGCTCGGTCCCCTCAGTGTGTTGTTGATCCT
66 GA-CCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCTCGGTCCCC-CTGCGTGCTG-TGATCCT
* * * * ***
18219724 GCTATCGCAACTCTCGGTCTGGTCCAAT
128 ACTGTCGCAACCCTCGGTCCGGTTGGAT
* * * * * * *
18219752 CTTAGAC-GGGAATGAACTCCATACGCCTAAGTCAA-CCACGAAATGAGCGTATGGGTGCTGAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG-
** * * * * * *
18219815 CGGTCAGAGAGGCATAATGCGCAAGCTGGGGATTGGCTCGATCTCTCTCTGCGTGCTGTCGGTCC
65 CGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCTCGGTC-C-CCCTGCGTGCTGT-GATCC
* * * ** **
18219880 CACTGCCACAACCCTCGGTCCGACTGGGG
127 TACTGTCGCAACCCTCGGTCCGGTTGGAT
* * *
18219909 CTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG-
* * * * * *
18219974 CGACCGGAGAGGCAGAATGTGCAAGCTGAGTATCAGCCCGGTCCCCCTGCGTGCTGCTGATCCTA
65 CGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTGCGTGCTG-TGATCCTA
18220039 CTGTCGCAACCCTCGGTCCGGTTGGAT
129 CTGTCGCAACCCTCGGTCCGGTTGGAT
18220066 CTTAGAC-TGGGAATGAACTCCAT
1 CTTAGACAT-GGAATGAACTCCAT
18220089 CTGCTTAGAC
Statistics
Matches: 254, Mismatches: 75, Indels: 17
0.73 0.22 0.05
Matches are distributed among these distances:
156 52 0.20
157 114 0.45
158 34 0.13
159 54 0.21
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
GACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTGCGTGCTGTGATCCTACT
GTCGCAACCCTCGGTCCGGTTGGAT
Found at i:18220119 original size:26 final size:26
Alignment explanation
Indices: 18220066--18220121 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
18220056 CCGGTTGGAT
*
18220066 CTTAGACTGGGAATGAACTCCATCTG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
18220092 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18220118 CTTA
1 CTTA
18220122 AATCATCCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18220824 original size:26 final size:26
Alignment explanation
Indices: 18220787--18220839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18220777 GGCTCAAACT
18220787 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18220813 CTTAGA-TAGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
18220839 C
1 C
18220840 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18221317 original size:26 final size:26
Alignment explanation
Indices: 18221288--18221340 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18221278 CTGGTCTGAT
*
18221288 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18221314 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18221340 C
1 C
18221341 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18221661 original size:171 final size:171
Alignment explanation
Indices: 18221313--18221786 Score: 456
Period size: 171 Copynumber: 2.8 Consensus size: 171
18221303 AACTCTGTAT
* * * * *
18221313 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-ATGCAGGCGCTCAG
1 GCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * *
18221377 CCAGCCGGAGAGGCATAATGCATAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTTGATC
66 CCAGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGATCCCCCTCTACCTGCTGTCGATC
* *
18221442 CCGCTATCGGTCCTGCTGCCACAACCCTCGGTCTGACTGGG
131 CCGCTATCGGTCCTGCTACCACAACCCTCGGTCTGACTGGA
* * * * *
18221483 GCTTAGACAT-AGAATGAACTCCGTATACGTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCA
1 GCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
18221547 ACCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GATCCGATCCCACCT-TGCCTGCTGTCG
65 ACCAGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAG-CCCGATCCC-CCTCTACCTGCTGTCG
* * * * * * *
18221610 TTCCTGCT-GCTGGTCCTGCTATCGCAACCCTCGGTTTGGTCT-GA
128 ATCCCGCTATC-GGTCCTGCTACCACAACCCTCGGTCT-GACTGGA
* * * * * * * * *
18221654 TCTTAGACTGTGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAG
1 GCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* *** * ** * * * *
18221719 CCGGTTAGAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTACGTGCTGTCGATC
66 CCAGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGATCCCCCTCTACCTGCTGTCGATC
18221784 CCG
131 CCG
18221787 ATGCCACAAC
Statistics
Matches: 243, Mismatches: 52, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
170 48 0.20
171 188 0.77
172 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCAGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGATCCCCCTCTACCTGCTGTCGATC
CCGCTATCGGTCCTGCTACCACAACCCTCGGTCTGACTGGA
Found at i:18222041 original size:342 final size:339
Alignment explanation
Indices: 18220971--18222060 Score: 996
Period size: 342 Copynumber: 3.2 Consensus size: 339
18220961 TCGATCTAAC
** ** *
18220971 CTTAGACTG-GGAATGAACTCCATATGCAAAAGTCAACCCACGAAACGAGCGTATGGGCGTTTAG
1 CTTAGACTGCGG-ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* * * * * * *
18221035 CCGGTCGAAGAGGAATAATGCCCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTG-CCAGT
65 CCGGTAG-AGAGGCATAATGCACAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGA-T
* ** * * *
18221099 CCC-ATCGCCACAACCTTCAAT-TCGGCTGGGGCTTAGACATGGTATGAACTCCCTATCCCTAAG
128 CCCGAT-GCCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAG
** * *
18221162 CCAACTGACGAAACAGGCGTGCGGGCGCTCAATCAACCAGAGAGGCAGAATGCGCAAGCTGGGGA
191 CCAACCCACGAAACAGGCGTGCGGGCGCTC-ATCAACCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * * ** * * * **
18221227 TCGGCTCGATCCCCTCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTA
255 TCGACCCGATCCCCCCTGTGTGCTGTCTATCCTACTG-CGCAACCCTCGATATGGTCCAATCTTA
*
18221292 GACTGGGAATGAACTCTGTAT
319 CACTGGGAATGAACTCTGTAT
* * * * * *
18221313 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-ATGCAGGCGCTCAG
1 -CTTAGACTGCGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
*** * * *
18221377 CCAGCCGGAGAGGCATAATGCATAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTTGATC
65 CC-GGTAGAGAGGCATAATGCACAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGC---TG-T-
* * *
18221442 CCGCTATCGGTCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATAGAATGAACTCCGT
124 -CG--ATC---CC-GATGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCT
* * * * * * *
18221507 ATACGTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAACCAGCCGGAGAGGCAGAATGCGTA
182 ATACCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTC-ATCAACCGGAGAGGCAGAATGCGCA
* * * ** *
18221572 AGCCGGGGATCGATCCGATCCCACCT-TGCCTGCTGTCGT-TCCTGCTGCTG--GTCCT-GCTAT
246 AGCCGGGGATCGACCCGATCCCCCCTGTG--TGCTGTC-TATCCTACTGC-GCAACCCTCGATAT
* * ** *
18221632 CG--CAA-C---C-CTCGGTTTG--GTCTG-AT
307 GGTCCAATCTTACACTGGGAATGAACTCTGTAT
* * * * *
18221655 CTTAGACTGTGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGC
1 CTTAGACTGCGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* *
18221720 CGGTTAGAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTACGTGCTGTCGATCC
66 CGG-TAGAGAGGCATAATGCACAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGATCC
* *
18221785 CGATGCCACAACCCTCGGTCTGACTGGGGCTTAGTCATGGAATGAACTCCCTATGCCTAAGCCAA
130 CGATGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAA
* ** * * * * *
18221850 CCCACAAAATGGGCTTGCTGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAACCGGGGATCGA
195 CCCACGAAACAGGCGTGCGGGCGCTCA-TCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * *
18221915 CCCGGTCCCCCCTGTGTGCTGTCTATCTTACTGCGCAACCCTCGATTTGGTCCAATCTTACACTG
259 CCCGATCCCCCCTGTGTGCTGTCTATCCTACTGCGCAACCCTCGATATGGTCCAATCTTACACTG
18221980 GGAATGAACTCTGTAT
324 GGAATGAACTCTGTAT
*
18221996 ACTTAGACTACGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 -CTTAGACTGCGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
18222061 TCGACCAGAG
Statistics
Matches: 586, Mismatches: 121, Indels: 81
0.74 0.15 0.10
Matches are distributed among these distances:
328 2 0.00
329 15 0.03
330 120 0.20
331 8 0.01
333 3 0.01
334 4 0.01
336 2 0.00
337 1 0.00
338 7 0.01
339 2 0.00
340 4 0.01
341 47 0.08
342 167 0.28
343 48 0.08
344 2 0.00
345 8 0.01
349 2 0.00
350 3 0.01
351 1 0.00
352 4 0.01
353 5 0.01
354 114 0.19
355 17 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (339 bp):
CTTAGACTGCGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
CGGTAGAGAGGCATAATGCACAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGATCCC
GATGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAC
CCACGAAACAGGCGTGCGGGCGCTCATCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC
CGATCCCCCCTGTGTGCTGTCTATCCTACTGCGCAACCCTCGATATGGTCCAATCTTACACTGGG
AATGAACTCTGTAT
Found at i:18223230 original size:158 final size:155
Alignment explanation
Indices: 18222728--18223222 Score: 452
Period size: 158 Copynumber: 3.1 Consensus size: 155
18222718 GAACTCATAT
* * * *
18222728 TCTTAGACATAGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
1 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * *
18222793 CCGACCAGAGACGCAGAATGCGCAAGCCGGGGATTGGCCCGCTCCCCCCTACGTGCTGTCAATCC
65 CCGGTC-GAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * **
18222858 TGCT-ACTGCAACCCTTGATCCGGGCTAA
129 TGCTGAC-ACAACCCTCGATCC-GGCCGA
* * * * * * * *
18222886 TCTTAGACTAGGAATGAACTCCATATGCGTAAGTCAACCCATGAAATGAGCGAGCGGACGCTGAG
1 TCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18222951 TCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGATCCCCCTCTGCGTGCTATCGGTC
65 CCGGTCGAA-AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATC
* * * * * *
18223016 CCGCTGCCACAACCCTCAATTCGGCTGGG
128 CTGCTGACACAACCCTCGATCCGGC-CGA
* * ** * *
18223045 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAACGAAACAAGTGTGCGGGCGCTCAG
1 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
18223110 CCGGTCGGAAAGGCAGAATGCGCAAGTCGGGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGGTC-GAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* *
18223175 TGTTGTCACAACCCTCGATCCGGTCCGA
129 TGCTGACACAACCCTCGATCCGG-CCGA
18223203 TCTTAGACTGGGAATGAACT
1 TCTTAGACT-GGAATGAACT
18223223 TTGTATGCTT
Statistics
Matches: 263, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 140 0.53
159 114 0.43
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
TCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTGACACAACCCTCGATCCGGCCGA
Found at i:18223978 original size:26 final size:26
Alignment explanation
Indices: 18223927--18223979 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18223917 GGCTCAAACT
* *
18223927 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18223953 CTTAGACAT-GGAATTAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18223979 C
1 C
18223980 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18224316 original size:159 final size:158
Alignment explanation
Indices: 18223982--18224417 Score: 351
Period size: 159 Copynumber: 2.8 Consensus size: 158
18223972 CCATATGCCT
* * * * * * * * *
18223982 AAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATGGGCAAGCCG-
1 AAGCCAACCCACAAAATGAGCGTACGGGCACTCAGCCGGCCGAAGAGGAAGAATGCGCAAGCCGA
* * * * ** ** ** * * * * *
18224046 GGCATCGCCCCGGTCCCCCCTACATGCTATCGATCCTGCTACTGCAACTCTCAGTCTGGTCT-GA
66 GG-ATCGGCCCGTTCCCCCCTGCGTGCTGCCGATCCCACTACAACAACCCTCGGTC-CGACTGGG
* * *
18224110 TCTTAGACTGTGAATGAACTCCGTATGCAA
129 GCTTAGACTGTGAATGAAATCCCTATGCAA
* ** * * *
18224140 AAGTCAACCCATGAAATGAGCGTACGGGCACTGAGCCGGTCGAAGAGGAATAATGCGCAAGCC-A
1 AAGCCAACCCACAAAATGAGCGTACGGGCACTCAGCCGGCCGAAGAGGAAGAATGCGCAAGCCGA
* * * *
18224204 GGGATCGGCCCAG-TCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCCGACTGG
66 -GGATCGGCCC-GTTCCCCC-CTGCGTGCTGCCGATCCCACTACAACAACCCTCGGTCCGACTGG
**
18224268 GGCTTAGACATG-GAATGAAATCCCTATGCCT
128 GGCTTAGAC-TGTGAATGAAATCCCTATGCAA
* * ** * * *
18224299 AAGCCAACCCACAAAATGGGCGTGCGGGCGTTCAGCCTGCCGGAGAGGTAGAATGCGCAAGCCGA
1 AAGCCAACCCACAAAATGAGCGTACGGGCACTCAGCCGGCCGAAGAGGAAGAATGCGCAAGCCGA
* *
18224364 GGATCGGCTCGTTCCCCCCTGCGTGCTGCCGATCCTACTACAACAACCCTCGGT
66 GGATCGGCCCGTTCCCCCCTGCGTGCTGCCGATCCCACTACAACAACCCTCGGT
18224418 TCGATCCGAT
Statistics
Matches: 218, Mismatches: 52, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
158 98 0.45
159 117 0.54
160 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
AAGCCAACCCACAAAATGAGCGTACGGGCACTCAGCCGGCCGAAGAGGAAGAATGCGCAAGCCGA
GGATCGGCCCGTTCCCCCCTGCGTGCTGCCGATCCCACTACAACAACCCTCGGTCCGACTGGGGC
TTAGACTGTGAATGAAATCCCTATGCAA
Found at i:18224464 original size:26 final size:26
Alignment explanation
Indices: 18224428--18224480 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18224418 TCGATCCGAT
*
18224428 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCAGATG
* *
18224454 CTTAGATTGGGGATGAACTTCAGATG
1 CTTAGACTGGGAATGAACTTCAGATG
18224480 C
1 C
18224481 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCAGATG
Found at i:18231427 original size:26 final size:26
Alignment explanation
Indices: 18231389--18231441 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18231379 GGCTCAACAT
18231389 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
18231415 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
18231441 C
1 C
18231442 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:18231896 original size:159 final size:158
Alignment explanation
Indices: 18231531--18231918 Score: 399
Period size: 159 Copynumber: 2.4 Consensus size: 158
18231521 TCCCCCCCAT
* * * *
18231531 CATGCTGTCGATCCTGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGAC-TGGAAATGAACTCT
1 CATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGATCCGATCTTAGACATGG-AATGAACTCC
* * * * * *
18231595 GTATGCATAAGTCAACCCACGGAATGAGCGTGCGGGTGTTGAGCAGGCCGAAGAGGCATAATGCA
65 GTATGCATAAGCCAACCCACGGAATGAGCGTGCGGGCGCTCAGCAGGCCGAAGAGGCAGAATACA
* *
18231660 CAAGTCGAGGATTGACTCGGTCCCCCTATG
130 CAAGTCGAAGATCGACTCGGTCCCCCTA-G
* * * ** * * * * **
18231690 CATGCTGCCGGTCTTGCTGCCACAACCCTCAGTCCG-GCTGGGGCTTAGACATGGAATGAACTCC
1 CATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGATC-CGATCTTAGACATGGAATGAACTCC
* * * *
18231754 CTATGCCTAAGCCAACCCACGGAATGGGCGTGCGGGCGCTCAGCCGGCC-AGAGAGGCAGAATAC
65 GTATGCATAAGCCAACCCACGGAATGAGCGTGCGGGCGCTCAGCAGGCCGA-AGAGGCAGAATAC
*
18231818 GCAAGTCGAAGATCGACTCGGTCCCCCCTA-
129 ACAAGTCGAAGATCGACTCGGT-CCCCCTAG
* **
18231848 CGTGCTGTCGATCCAACTGCTGCAACCCTCGGTCTTGATCCGATCTTAGACTAT-GAATGAACTC
1 CATGCTGTCGATCCTGCTGCTGCAACCCTCGGTC-TGATCCGATCTTAGAC-ATGGAATGAACTC
18231912 CGTATGC
64 CGTATGC
18231919 TTAGACTGGG
Statistics
Matches: 181, Mismatches: 41, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
158 27 0.15
159 141 0.78
160 13 0.07
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGATCCGATCTTAGACATGGAATGAACTCCG
TATGCATAAGCCAACCCACGGAATGAGCGTGCGGGCGCTCAGCAGGCCGAAGAGGCAGAATACAC
AAGTCGAAGATCGACTCGGTCCCCCTAG
Found at i:18231921 original size:26 final size:26
Alignment explanation
Indices: 18231892--18231944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18231882 TTGATCCGAT
*
18231892 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18231918 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18231944 C
1 C
18231945 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.