Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 162 of 402
Found at i:18232529 original size:158 final size:158
Alignment explanation
Indices: 18232252--18232670 Score: 398
Period size: 158 Copynumber: 2.7 Consensus size: 158
18232242 GGTCTGGTCC
* * * * *
18232252 GATCTTAAATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCACTC
1 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
** * * *
18232317 AACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTACCCGCTGTGTGCTGTC-GA
66 AACAAGCCAGAGAGGCAGAATGCGCAAGACAGGGATCGGCCCAGTACCCGCTGTGTGCTGCCAG-
** *
18232381 TCTTACTGCCACAACCCTCAGTCCGTTCT-
130 TCCCACTGCCACAACCCTCAGTCCG-ACTG
* * * *
18232410 GATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTG
1 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
** * * * * * * *
18232475 AGTAAGTCGGATAGGCATAATGCGTAAGACA-GGATCGGCCCAGTCCCCCTCTGTGTGCTGCCAG
66 AACAAGCCAGAGAGGCAGAATGCGCAAGACAGGGATCGGCCCAGT-ACCCGCTGTGTGCTGCCAG
*
18232539 TCCCGCTGCCACAACCCTCAGTCCGACTG
130 TCCCACTGCCACAACCCTCAGTCCGACTG
** * * * * *
18232568 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCTGGCGCT
1 GATCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * *
18232632 CAGCCAA-CCGGAGAGGCAGGATGCGTAAGTCGGGGATCG
65 CA-ACAAGCCAGAGAGGCAGAATGCGCAAGACAGGGATCG
18232671 AACGGGTGGT
Statistics
Matches: 209, Mismatches: 46, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 14 0.07
158 185 0.89
159 10 0.05
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AACAAGCCAGAGAGGCAGAATGCGCAAGACAGGGATCGGCCCAGTACCCGCTGTGTGCTGCCAGT
CCCACTGCCACAACCCTCAGTCCGACTG
Found at i:18233304 original size:26 final size:26
Alignment explanation
Indices: 18233266--18233318 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18233256 GGCTCAAAAT
18233266 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18233292 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18233318 C
1 C
18233319 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18234965 original size:158 final size:158
Alignment explanation
Indices: 18234612--18235270 Score: 584
Period size: 158 Copynumber: 4.2 Consensus size: 158
18234602 AACCTCGTAT
* * * * *
18234612 GCTTAGACAT-CGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
18234676 GCCGGCTG--GATGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGAT
66 GCCGACCGAAGA-GGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGCCGAT
* *
18234739 CCTGCTGTCACAACCCTCGGTCTGGTCTGA
130 CCTGCTGCCACAACCCTCAGTCTGG-CTGA
* * * *
18234769 TCTTAGA-ATGGGAATGAAATCCGTACGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACATGGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** *
18234833 GCCGACTGAAGAGTCATAATGTGCAAGCCGAGGATCGACCCGGTCCCCCTCTTCACGCTACC-AG
66 GCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CTACGTGCTGCCGA-
** * *
18234897 TCCCACTGCCACAACTCTCAG-CTGGCTGGG
129 TCCTGCTGCCACAACCCTCAGTCTGGCT-GA
* * * * *
18234927 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TAGGCGTGCGAGCGCTC
1 GCTTAGACATGGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTC
* * * *
18234990 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGATCCCCCCTGCGTGCTGCCGA
65 AGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCCCCTACGTGCTGCCGA
** * * *
18235054 TCCTGCTGCCGTAACCCTCAGTCCGATCTAA
129 TCCTGCTGCCACAACCCTCAGTCTG-GCTGA
* * * * * * **
18235085 TCTTAGAC-TGGGAATGAAATCCGTATGCATAAGTCAACCCACAAAATGAGCGTCCGGGCACGGA
1 GCTTAGACATGGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
18235149 GCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTTGCGTGTTGTCGATC
66 GCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGCCGATC
* * * * *
18235214 CTGCTGTCGCAACCCTCAGTCCGATCCGA
131 CTGCTGCCACAACCCTCAGTCTG-GCTGA
* *
18235243 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACATGGGAATGAAATCCGTATGC
18235271 TTAGACTGGG
Statistics
Matches: 406, Mismatches: 81, Indels: 29
0.79 0.16 0.06
Matches are distributed among these distances:
156 2 0.00
157 88 0.22
158 286 0.70
159 30 0.07
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGCCGATC
CTGCTGCCACAACCCTCAGTCTGGCTGA
Found at i:18235184 original size:316 final size:315
Alignment explanation
Indices: 18234612--18235198 Score: 861
Period size: 316 Copynumber: 1.9 Consensus size: 315
18234602 AACCTCGTAT
* * * *
18234612 GCTTAGACATCGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATCGAATGAACTCCCTATGCCTAAACCAACCCACGAAAAGAGCGTGCGAGCGCTCAG
* * * * * * *
18234677 CCGGCTGGATGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CCGACCGGAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGCCGATCCT
* * * * *
18234742 GCTGTCACAACCCTCGGTCTGGTCTGATCTTAGAATGGGAATGAAATCCGTACGCATAAGTCAAC
131 GCTGCCACAACCCTCAGTCCGATCTAATCTTAGAATGGGAATGAAATCCGTACGCATAAGTCAAC
* * * * * * *
18234807 CCACGAAACGAGCGTGCGGGCGCTGAGCCGACTGAAGAGTCATAATGTGCAAGCCGAGGATCGAC
196 CCACAAAACGAGCGTCCGGGCACGGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGAC
18234872 CCGGTCCCCCTCTTCACGCTACCAGTCCCACTGCCACAACTCTCAGCTGGCTGGG
261 CCGGTCCCCCTCTTCACGCTACCAGTCCCACTGCCACAACTCTCAGCTGGCTGGG
* *
18234927 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAG-GCGTGCGAGCGCTCA
1 GCTTAGACATCGAATGAACTCCCTATGCCTAAACCAACCCACGAAA-AGAGCGTGCGAGCGCTCA
*
18234991 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATC
65 GCCGACCGGA-AGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGCCGATC
** * *
18235056 CTGCTGCCGTAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAAATCCGTATGCATAAGTCA
129 CTGCTGCCACAACCCTCAGTCCGATCTAATCTTAGAATGGGAATGAAATCCGTACGCATAAGTCA
*
18235121 ACCCACAAAATGAGCGTCCGGGCACGGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCG
194 ACCCACAAAACGAGCGTCCGGGCACGGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCG
*
18235186 GCCCGGTCCCCCT
259 ACCCGGTCCCCCT
18235199 TGCGTGTTGT
Statistics
Matches: 238, Mismatches: 32, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
315 64 0.27
316 174 0.73
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (315 bp):
GCTTAGACATCGAATGAACTCCCTATGCCTAAACCAACCCACGAAAAGAGCGTGCGAGCGCTCAG
CCGACCGGAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGCCGATCCT
GCTGCCACAACCCTCAGTCCGATCTAATCTTAGAATGGGAATGAAATCCGTACGCATAAGTCAAC
CCACAAAACGAGCGTCCGGGCACGGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGAC
CCGGTCCCCCTCTTCACGCTACCAGTCCCACTGCCACAACTCTCAGCTGGCTGGG
Found at i:18235273 original size:26 final size:26
Alignment explanation
Indices: 18235244--18235322 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18235234 CCGATCCGAT
* *
18235244 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
18235270 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
18235296 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
18235322 C
1 C
18235323 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:18236031 original size:26 final size:26
Alignment explanation
Indices: 18235993--18236045 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18235983 GGCTCAAAAT
*
18235993 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
18236019 CTTAGACAT-GGAAAGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
18236045 C
1 C
18236046 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:18236801 original size:26 final size:26
Alignment explanation
Indices: 18236751--18236801 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
18236741 TGGTCCGATC
* **
18236751 TTAGATTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
18236777 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
18236802 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:18243131 original size:26 final size:26
Alignment explanation
Indices: 18243095--18243147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18243085 CCGATCCGAT
18243095 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18243121 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18243147 C
1 C
18243148 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18243679 original size:158 final size:158
Alignment explanation
Indices: 18243283--18243684 Score: 387
Period size: 159 Copynumber: 2.5 Consensus size: 158
18243273 TCCTCCTGTT
* * * *
18243283 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
1 GTAACCCTC-GTTCAGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * ** * * * *
18243348 AACGAGCGTTCGGATGTTGAGCCGGCCGAAAAGGCATAATGCGCAAGTCAAGGATCGGCCCGGTC
65 AATGAGCGTACGGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTC
*
18243413 CCCCTCTACGTGCTACCGATCCCGCTGCC
130 CCCCTCTACGTGCTACCGATCCCGCTACC
** * * * * * ** * * *
18243442 ACAACACTTGGTCCGACTGGGGTTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACG
1 GTAACCCTCGTTCAGTCT-GATTTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
** * * * * * * *
18243506 AAATG-GCCGCGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCATGCCAAGGATTGGCCTGG
64 AAATGAG-CGTACGGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGCCAAGGATCGGCCCGG
** *
18243570 T-CCCCTCTACGTGCTGTCGATCCTGCTACC
128 TCCCCCTCTACGTGCTACCGATCCCGCTACC
*
18243600 GTAACCCTCGATTCAGTCTGATTTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
1 GTAACCCTCG-TTCAGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
*
18243665 AATGAGCATACGGGCGCTCA
65 AATGAGCGTACGGGCGCTCA
18243685 ACCGACTAGA
Statistics
Matches: 186, Mismatches: 51, Indels: 13
0.74 0.20 0.05
Matches are distributed among these distances:
157 1 0.01
158 89 0.48
159 95 0.51
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GTAACCCTCGTTCAGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
ATGAGCGTACGGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCC
CCCTCTACGTGCTACCGATCCCGCTACC
Found at i:18243697 original size:158 final size:157
Alignment explanation
Indices: 18243283--18243699 Score: 356
Period size: 158 Copynumber: 2.6 Consensus size: 157
18243273 TCCTCCTGTT
* * * *
18243283 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
1 GTAACCCTC-GTTCAGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * ** * * * * * *
18243348 AACGAGCGTTCGGATGTTGAGCCGGC-CGAAAAGGCATAATGCGCAAGTCAAGGATCGGCCCGGT
65 AATGAGCGTACGGGCGCTCAGCC-GCTAG-AGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGT
*
18243412 CCCCCTCTACGTGCTACCGATCCCGCTGCC
128 CCCCCTCTACGTGCTACCGATCCCGCTACC
** * * * * * ** * * *
18243442 ACAACACTTGGTCCGACTGGGGTTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACG
1 GTAACCCTCGTTCAGTCT-GATTTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
** * * * * * *
18243506 AAATG-GCCGCGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCATGCCAAGGATTGGCCTGG
64 AAATGAG-CGTACGGGCGCTCAGCCGCT-AGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGG
** *
18243570 T-CCCCTCTACGTGCTGTCGATCCTGCTACC
127 TCCCCCTCTACGTGCTACCGATCCCGCTACC
*
18243600 GTAACCCTCGATTCAGTCTGATTTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
1 GTAACCCTCG-TTCAGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* *
18243665 AATGAGCATACGGGCGCTCAACCGACTAGAGAGGC
65 AATGAGCGTACGGGCGCTCAGCCG-CTAGAGAGGC
18243700 CGGTTGGAGA
Statistics
Matches: 194, Mismatches: 55, Indels: 19
0.72 0.21 0.07
Matches are distributed among these distances:
157 1 0.01
158 99 0.51
159 92 0.47
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GTAACCCTCGTTCAGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
ATGAGCGTACGGGCGCTCAGCCGCTAGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCC
CCTCTACGTGCTACCGATCCCGCTACC
Found at i:18244044 original size:337 final size:320
Alignment explanation
Indices: 18243288--18244178 Score: 889
Period size: 337 Copynumber: 2.7 Consensus size: 320
18243278 CTGTTGTAAC
* *
18243288 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
1 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGA
** ** * * * *
18243353 GCGTTCGGATGTTGAGCCGGCCGAAAAGGCATAATGCGCAAGTCAAGGATCGGCCCGGTCCCCCT
66 GCGTTCGGGCGTTGAGCCGGTTGGAGAGGCATAATGCGCAAGCCAAGGATCGGCTCGGTCCCCCT
* * *
18243418 CTACGTGCTACCGATCCCGCTGCCACAACACTTGGTCCGACTGGGGTTTAGACATGGAATGAACT
131 CTACGTGCTACCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT
* * * * **
18243483 CCTTATGCCTAAGCCAACCCACGAAATGGCCGCGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATG
196 CCCTATGCCTAAGCCAACCCACGAAACGGCCGCGCGGGCACTCAATCGGTCAAAGAGGCAGAATG
* * ** *
18243548 CGCATGCCAAGGATTGGCCTGGTCCCCTCTACGTGCTGTCGATCCTGCTACCGTAAC---
261 CGCAAGCCAAGGATCGGCCTAATCCCCTCTACGTGCTATCGATCCTGCTACCGTAACTAA
* * * * *
18243605 CCTCGATTC-AGTCTGATTTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
1 CCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
* * *
18243669 AGCATACGGGCGCTCAACCGACTAGAGAGGCCGGTTGGAGAGGCATAATGTGCAAGCCAAGGATC
65 AGCGTTCGGGCG-T--------T---GA-GCCGGTTGGAGAGGCATAATGCGCAAGCCAAGGATC
* * * * *
18243734 GGCTCGATCCCCCTCTACATTCTACCGATCTCACTGCCTGCTACCACAACCCTCGATCCGACTAG
117 GGCTCGGTCCCCCTCTACGTGCTACCGATC-C-C-G-CTG---CCACAACCCTCGGTCCGACTGG
* * * *
18243799 GGCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCATTC
175 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCCGCGCGGGCACTC
* * * *
18243863 AATCGGTCAAAGAGGCAGAATGCGTAAGCCGAGGATCGG-TTCAATCCCCTACTGCGTGCTATCG
239 AATCGGTCAAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCT-AATCCCCT-CTACGTGCTATCG
18243927 ATCCTGCTATTGGTCC-TACTACCATAA
302 ATCCTGCTA-----CCGTA--A-C-TAA
*
18243954 CACTCGGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
1 C-CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
* * ** ** *
18244019 AGCGTTCGGGCGTTGAGCTGGTTGGAGAGGCATAATACATAAGCCGGGGATCAG-TCAGGTCCCC
65 AGCGTTCGGGCGTTGAGCCGGTTGGAGAGGCATAATGCGCAAGCCAAGGATCGGCTC-GGTCCCC
* * * * *
18244083 CTCTACGTGCTATCGATCCCACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATAGAATGAA
129 CTCTACGTGCTACCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAA
18244148 CTCCCTATGCCTAAGCCAACCCACGAAACGG
194 CTCCCTATGCCTAAGCCAACCCACGAAACGG
18244179 GCATGCTGGC
Statistics
Matches: 463, Mismatches: 72, Indels: 66
0.77 0.12 0.11
Matches are distributed among these distances:
317 64 0.14
318 1 0.00
326 1 0.00
329 3 0.01
330 120 0.26
331 1 0.00
332 1 0.00
333 4 0.01
334 3 0.01
335 1 0.00
336 4 0.01
337 162 0.35
338 23 0.05
341 1 0.00
342 2 0.00
343 2 0.00
344 1 0.00
345 1 0.00
349 2 0.00
350 65 0.14
351 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (320 bp):
CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGA
GCGTTCGGGCGTTGAGCCGGTTGGAGAGGCATAATGCGCAAGCCAAGGATCGGCTCGGTCCCCCT
CTACGTGCTACCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT
CCCTATGCCTAAGCCAACCCACGAAACGGCCGCGCGGGCACTCAATCGGTCAAAGAGGCAGAATG
CGCAAGCCAAGGATCGGCCTAATCCCCTCTACGTGCTATCGATCCTGCTACCGTAACTAA
Found at i:18244226 original size:159 final size:158
Alignment explanation
Indices: 18243972--18244278 Score: 364
Period size: 159 Copynumber: 1.9 Consensus size: 158
18243962 CCGATCCGAT
* * * * * * * *
18243972 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGTTGAGC
1 CTTAGACTGAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *
18244037 TGGTTGGAGAGGCATAATACATAAGCCGGGGATCAGTCAGGTCCCCCTCTACGTGCTATCGATCC
66 CGATCGGAAAGGCATAATACACAAGCCGGGGATCAGCCAGGTCCCCC-CTACGTGCTATCGATCC
*
18244102 CACTGCCACAACCCTCGGTTCGGCTGGGG
130 CACTACCACAACCCTCGGTTCGGCTGGGG
* *
18244131 CTTAGACAT-AGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCTGGCGCTCAG
1 CTTAGAC-TGAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * ** *
18244195 CCGATCGGAAAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCC
65 CCGATCGGAAAGGCATAATACACAAGCCGGGGATCAGCCAGGTCCCCCCTACGTGCTATCGATCC
**
18244260 TGCTACCACAACCCTCGGT
130 CACTACCACAACCCTCGGT
18244279 CCAGTCTGAT
Statistics
Matches: 122, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 30 0.25
159 91 0.75
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGATCGGAAAGGCATAATACACAAGCCGGGGATCAGCCAGGTCCCCCCTACGTGCTATCGATCCC
ACTACCACAACCCTCGGTTCGGCTGGGG
Found at i:18244341 original size:26 final size:26
Alignment explanation
Indices: 18244289--18244341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18244279 CCAGTCTGAT
*
18244289 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
18244315 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
18244341 C
1 C
18244342 CTACGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:18244438 original size:343 final size:349
Alignment explanation
Indices: 18243972--18244719 Score: 866
Period size: 355 Copynumber: 2.1 Consensus size: 349
18243962 CCGATCCGAT
* * * * * * * *
18243972 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAAC
* * * *
18244037 TGGTTGGAGAGGCATAATACATAAGCCGGGGATCAGTCAGGTCCCCCTCTACGTGCTATCGAT-C
66 CGGTCGGAGAGGCATAATACATAAGCCGGGGATCAGCCAGATCCCCCTCTACGTGCTATCGATCC
* * * *
18244101 -C-C-A-CTG-CCACAACCCTCGGTTCGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTA
131 ACTCGACCTGACCACAACCCTCGGTCCGACTAGGGCTTAGACATAGAATAAACTCCCTATGCCTA
* * * * *
18244161 AGCCAACCCACGAAACGGGCATGCTGGCGCTCAGCCGATCGGAA-AGGCATAATGCACAAGTCGG
196 AGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGA-CCGAAGAGGCAGAATGCACAAGTCGA
* ** * * *
18244225 GGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTACCACAACCCTCGGTCC-AGTCTGAT
260 AGATCAGCCCGGTCCCCCCTACGTGCTATCGATCCTACTACCACAACCCTCGGTCCGA-TCAGAT
*
18244289 CTTAGACTGGGAATGAACTCTGCATG
324 ATTAGACTGGGAATGAACTCTGCATG
* *
18244315 CTTAGACTGGGGATGAACTCCGTATGCCTACGTTAACCCACGAAATGAGCATACGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAAC
* * * * * **
18244380 CGGTCGGAGAGGCATAATGCGTAAG-CGTGGATCAGCCCCGATCCCCTTCTGTGTGCTATCGATC
66 CGGTCGGAGAGGCATAATACATAAGCCGGGGATCAG-CCAGATCCCCCTCTACGTGCTATCGAT-
* * *
18244444 CCACTGTCGATCCTGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATAAACTTCGT
129 CCAC--TCGA-CCTG--ACCACAACCCTCGGTCCGACTAGGGCTTAGACATAGAATAAACTCCCT
* * * * *
18244509 ATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGCA
189 ATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACA
* * * *
18244574 AGTCGAAGATCAGCTCGGTCCCCCCTACGTGCTATCGATCCTACTATCGCAACCCTTGGTCCGAT
254 AGTCGAAGATCAGCCCGGTCCCCCCTACGTGCTATCGATCCTACTACCACAACCCTCGGTCCGAT
*
18244639 CAGATATTAGACTGGGAATGAACTCTGTATG
319 CAGATATTAGACTGGGAATGAACTCTGCATG
* * * *
18244670 CTTAGACTAGGGATGAAGTCCGTAGGCCTAAGTCAACCCACGAAACGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
18244720 GTGCGGGTGC
Statistics
Matches: 334, Mismatches: 56, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
342 9 0.03
343 97 0.29
345 1 0.00
346 1 0.00
349 1 0.00
350 1 0.00
352 3 0.01
354 4 0.01
355 216 0.65
356 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (349 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAAC
CGGTCGGAGAGGCATAATACATAAGCCGGGGATCAGCCAGATCCCCCTCTACGTGCTATCGATCC
ACTCGACCTGACCACAACCCTCGGTCCGACTAGGGCTTAGACATAGAATAAACTCCCTATGCCTA
AGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGTCGAA
GATCAGCCCGGTCCCCCCTACGTGCTATCGATCCTACTACCACAACCCTCGGTCCGATCAGATAT
TAGACTGGGAATGAACTCTGCATG
Found at i:18244817 original size:12 final size:12
Alignment explanation
Indices: 18244800--18244839 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
18244790 CCCCCCTACG
*
18244800 TGCTGCTGATCC
1 TGCTGCTGGTCC
18244812 TGCTGCTGGTCC
1 TGCTGCTGGTCC
18244824 TGCTGCTGGTCC
1 TGCTGCTGGTCC
18244836 TGCT
1 TGCT
18244840 ACTGCAACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.03, C:0.33, G:0.30, T:0.35
Consensus pattern (12 bp):
TGCTGCTGGTCC
Found at i:18244902 original size:26 final size:26
Alignment explanation
Indices: 18244865--18244917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18244855 CCGATCCGAT
*
18244865 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
*
18244891 CTTAGACATGGAATGAACTTTGTATG
1 CTTAGACATGGAATGAACTTCGTATG
18244917 C
1 C
18244918 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:18245243 original size:26 final size:26
Alignment explanation
Indices: 18245207--18245259 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18245197 CTGGTCCATT
18245207 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
18245233 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
18245259 C
1 C
18245260 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:18246195 original size:26 final size:26
Alignment explanation
Indices: 18246166--18246218 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18246156 CCGGTTCGAT
*
18246166 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18246192 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18246218 C
1 C
18246219 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18246543 original size:26 final size:26
Alignment explanation
Indices: 18246507--18246559 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18246497 CTGGTCTGAT
*
18246507 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18246533 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18246559 C
1 C
18246560 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18246609 original size:341 final size:330
Alignment explanation
Indices: 18245967--18246589 Score: 794
Period size: 341 Copynumber: 1.9 Consensus size: 330
18245957 GATCGGTCCG
* * *
18245967 ATCCCCCTCTGCGTGCTGCTAGTCACGTTGCCACAACCCTCGGTCTGGTTGGGGTTTAGACATGG
1 ATCCCCCTCTGCGTGCTGCTAGTCACGCTGCCACAACCATCGGTCTGGTTGGGGCTTAGACATGG
*
18246032 AATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGGTGTGCAGGTGCTCAACCAGTCAGAGAG
66 AATGAACTCCCTATGCCTAAGCCAACCAACAAAATGGGTGTGCAGGTGCTCAACCAGTCAGAGAG
* * ** * *
18246097 GTAGAATGTGCAAGCCGGGGATTGACCCGGTCCCCCTATGTGTTGTCGTAACCCTCGATCCGGTT
131 GCAGAATGCGCAAGCCGGGGATCCACCCGGTCCCCCTATGTGTTGTCGCAAACCTCGATCCGGTT
*
18246162 CGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
196 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * *
18246227 ACCCATGAAACGAGTGTGCGGGCACTTAGCCAGTCGGAGAGGTAGAATGTGTAAGTCAAGGATCA
261 ACCCACGAAACGAGTGTACGGGCACTAAGCCAGTCGGAGAGGTAGAATGTGTAAGTCAAGGATCA
18246292 AATCA
326 AATCA
* * *
18246297 ATCCCCTTCTGCGTGCTG-TCGGTCCCGCTGCCACAACCATCGGTCTGGTTGGGGCTTAGACATG
1 ATCCCCCTCTGCGTGCTGCT-AGTCACGCTGCCACAACCATCGGTCTGGTTGGGGCTTAGACATG
* * *
18246361 GAATGAACTCCCTATGCTTAAGCCAACC-ACAAAATGGGTGTG-AGG-GCACTCAGCCA-TCCGA
65 GAATGAACTCCCTATGCCTAAGCCAACCAACAAAATGGGTGTGCAGGTG--CTCAACCAGTCAG-
* * *
18246422 AGAGGCAGAATGCGTAAGTCGGGGA-CCACCCGGTCCCCTCTGCGTGCTACCGATCCTGCTACCG
127 AGAGGCAGAATGCGCAAGCCGGGGATCCACCCGGTCCCC-CT--ATG-T---G-T--TG-T--CG
* *
18246486 CAAACCTC-AGTCTGG-TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGA
179 CAAACCTCGA-TCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
18246549 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGG
242 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGG
18246590 TGCTCAATCG
Statistics
Matches: 250, Mismatches: 24, Indels: 27
0.83 0.08 0.09
Matches are distributed among these distances:
327 1 0.00
328 17 0.07
329 44 0.18
330 83 0.33
331 2 0.01
332 1 0.00
335 1 0.00
336 1 0.00
338 2 0.01
339 1 0.00
340 3 0.01
341 94 0.38
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (330 bp):
ATCCCCCTCTGCGTGCTGCTAGTCACGCTGCCACAACCATCGGTCTGGTTGGGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCAACAAAATGGGTGTGCAGGTGCTCAACCAGTCAGAGAG
GCAGAATGCGCAAGCCGGGGATCCACCCGGTCCCCCTATGTGTTGTCGCAAACCTCGATCCGGTT
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGTGTACGGGCACTAAGCCAGTCGGAGAGGTAGAATGTGTAAGTCAAGGATCA
AATCA
Found at i:18247229 original size:158 final size:157
Alignment explanation
Indices: 18246685--18247535 Score: 617
Period size: 158 Copynumber: 5.4 Consensus size: 157
18246675 CCGCTATCGG
* * ** * *
18246685 TCCTGCTGCCACAACCCTCAGTCC-GACTGGGGCTTAGACATGGAATGAACTCCATTTGCCTAAG
1 TCCTGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAG
* * * * * * * * ** *
18246749 CCAACCCACGAAACGAGTGTGCGAGCGATTAGCC-AGCCG-AGTGGCAGAATGCGTAAGCTAGGG
64 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGA-CTGAAGAGGCATAATGCACAAGCCAGGG
* ** **
18246812 ACCAG-CCTAATCCCCCCAACGTGCTGTCGA
128 ATC-GCCCCGATCCCCCCTGCGTGCTGTCGA
*** * ** *
18246842 TCCTGCTGTTGCAACCTTCGGTCTAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTCAG
1 TCCTGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGACT-GGAATGAACTCCGTATGCCTAAG
* * * * * *
18246906 TCAACCCACGAAACGAGG-GTTCGGGCACTGAGCCGACTGGAGAGGCATAATGCGCAAGCCAGGG
64 CCAACCCACGAAACG-GGCGTGCGGGCGCTCAGCCGACTGAAGAGGCATAATGCACAAGCCAGGG
* ** *
18246970 ATCGGCCCGATCCCCCTTCTGCGTGCTACCGG
128 ATCGCCCCGATCCCCC--CTGCGTGCTGTCGA
* * * ** *
18247002 TTCGGCTACCACAACCCTCGGTCCGG-CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAG
* * ** * * * *
18247066 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCTG-GTCGGGGAGGTAAAATGCGCAAGCCGGGG
64 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACT-GAAGAGGCATAATGCACAAGCCAGGG
* *
18247130 ATCGACTCGATCCCCCCTGCGTGCTGTCGA
128 ATCGCCCCGATCCCCCCTGCGTGCTGTCGA
* * * *
18247160 TCCTGCTGCCATAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCGTAAGT
1 TCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGC
* * * * * * *
18247225 CAACCCCCAAAATGAGCGTGCGGGTGATGAGCCGACTGAAGAGGCATAATGCACAAGCCAGGGAT
65 CAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACTGAAGAGGCATAATGCACAAGCCAGGGAT
* * *
18247290 CGCCCCGGTCCCCCTCTGCGTGCTGCCGG
130 CGCCCCGATCCCCC-CTGCGTGCTGTCGA
* * * ** *
18247319 TCCCGCTGCCACAACCCTCGATCCGGAT-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGGTCCGG-TCTGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
18247383 CCAACCCACGGAACGGGCATGCGAGCGCCCATCCG-GTAGAAGAGGCAGAATGCACAAGCTAGGG
64 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACT-GAAGAGGCATAATGCACAAGCCAGGG
* * * *
18247447 ATCAG-CCTGGTTCCCCCTGCGTGCTATCGA
128 ATC-GCCCCGATCCCCCCTGCGTGCTGTCGA
* * * * * *
18247477 TCTTGCTGTCGCAACCCTTGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
1 TCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGC
18247536 TTATACTGGG
Statistics
Matches: 539, Mismatches: 133, Indels: 43
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 79 0.15
158 209 0.39
159 126 0.23
160 123 0.23
161 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACTGAAGAGGCATAATGCACAAGCCAGGGATC
GCCCCGATCCCCCCTGCGTGCTGTCGA
Found at i:18247270 original size:318 final size:317
Alignment explanation
Indices: 18246677--18247535 Score: 1033
Period size: 317 Copynumber: 2.7 Consensus size: 317
18246667 TGCTGATCCC
* * * * * * *
18246677 GCTATCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATTT
1 GCTACCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * * * *
18246742 GCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGATTAGCCAG-CCGAGTGGCAGAATGCGTAAG
66 GCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG
* * ** * * **
18246806 CTAGGGACCAGCCTAATCCCCCCAACGTGCTGTCGATCCTGCTGTTGCAACCTTCGGTCTAGT-T
131 CTAGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCT
* * * *
18246870 CGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGGGTTCGGGCACT
196 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACT
* * *
18246935 GAGCCGACTGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTTCTGCGT
260 GAGCCGACTGAAGAGGCATAATGCACAAGCCAGGGATCGCCCCGATCCCCC-TCTGCGT
* * *
18246994 GCTACCGGTTCGGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTACCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * *
18247059 GCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCTGGTCGGGGAGGTAAAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG
** * * **
18247124 CCGGGGATC-GACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCATAACCCTCGGTCCGGTC
131 CTAGGGATCAGCCT-GATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTC
* * * * * *
18247188 TGATCTTAGACTGAGAATGAACTCTGTATGCGTAAGTCAACCCCCAAAATGAGCGTGCGGGTGA-
195 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG-CAC
*
18247252 TGAGCCGACTGAAGAGGCATAATGCACAAGCCAGGGATCGCCCCGGTCCCCCTCTGCGT
259 TGAGCCGACTGAAGAGGCATAATGCACAAGCCAGGGATCGCCCCGATCCCCCTCTGCGT
* * * *
18247311 GCTGCCGGTCCCGCTGCCACAACCCTCGATCCGGATGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTACCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * * *
18247376 GCCTAAGCCAACCCACGGAACGGGCATGCGAGCGCCCATCCGGTAGAAGAGGCAGAATGCACAAG
66 GCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG
* * * * * *
18247441 CTAGGGATCAGCCTGGTTCCCCCTGCGTGCTATCGATCTTGCTGTCGCAACCCTTGGTCCGGTCC
131 CTAGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCT
*
18247506 GATCTTAGATTGGGAATGAACTCCGTATGC
196 GATCTTAGACTGGGAATGAACTCCGTATGC
18247536 TTATACTGGG
Statistics
Matches: 453, Mismatches: 84, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
317 289 0.64
318 162 0.36
319 2 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (317 bp):
GCTACCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG
CTAGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTG
AGCCGACTGAAGAGGCATAATGCACAAGCCAGGGATCGCCCCGATCCCCCTCTGCGT
Found at i:18247538 original size:26 final size:26
Alignment explanation
Indices: 18247509--18247561 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18247499 CCGGTCCGAT
*
18247509 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
18247535 CTTATACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18247561 C
1 C
18247562 CTAAGTTAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18248027 original size:26 final size:26
Alignment explanation
Indices: 18247977--18248029 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18247967 CCAGTCCGAT
**
18247977 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18248003 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18248029 C
1 C
18248030 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18249594 original size:26 final size:26
Alignment explanation
Indices: 18249556--18249606 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18249546 GGCTCAAAAT
*
18249556 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAAAGAACTCCGTATA
18249582 CTTAGACAT-GGAAAGAACTCCGTAT
1 CTTAGAC-TGGGAAAGAACTCCGTAT
18249607 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATA
Found at i:18249936 original size:159 final size:159
Alignment explanation
Indices: 18249582--18251033 Score: 1115
Period size: 159 Copynumber: 9.2 Consensus size: 159
18249572 ACTCCGTATA
* * * *
18249582 CTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGGGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * *
18249647 CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCAATCCCAC-CTGCGTGCTATCGAT-C
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCC
* * *
18249710 CGACTGCCATAACCCTCAGTCCGGTCTGAT
131 CG-CTGCCACAACCCTCAATCCGGTCTGAG
* * * * *
18249740 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCATGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * ** *
18249804 CCGGTCGAAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGATCTGCCTCTGCATGCTACCGATC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
* *
18249869 CCGCTGCCACAACCATCAATCCGG-CTAGGG
130 CCGCTGCCACAACCCTCAATCCGGTCT-GAG
* *
18249899 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGACGTGCGGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCAGGCACTCAG
* * * * * * * * * *
18249963 CCGATCGGAGAGGCGGAATGCGTAAGTCGAGGATCGGCCCGA-ACCCC-CTGCATACTATCGATC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
** * ** ** * *
18250026 TTGCTACCGTAACCCTCGGTCTGGTCTGAT
130 CCGCTGCCACAACCCTCAATCCGGTCTGAG
* * * *
18250056 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * * * * * * * *
18250120 CTGATCGAAGAGGCATAATGCACAAGTCGAGGATCGACCCGGTCCCCCTC-GACGTGCTACCGGT
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTG-CGTGCTACCGAT
* * *
18250184 CCCGCTGCCACAACCCTCGATCC-GACTGGGG
129 CCCGCTGCCACAACCCTCAATCCGGTCT-GAG
* * * * * **
18250215 CTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGGCGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
** * ** *
18250280 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCT-TGCGTGCTGTCGATCT
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCC
* * * *
18250344 TGCTACCACAACCCTCAGTCCGGTCTGAT
131 CGCTGCCACAACCCTCAATCCGGTCTGAG
* * * * * * *
18250373 CTTAGA-TTGGAAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGTACTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * * * * ** * *
18250437 CTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTATGTGCTGCCGGTC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
** * *
18250502 CCATTGCCACAACCCTCGATCCGGT-TGGGG
130 CCGCTGCCACAACCCTCAATCCGGTCT-GAG
* * * * * * * *
18250532 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * **
18250597 TGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCTC-AGTCCCCC-CTGCGTCCTGTCGATC
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCTCTGCGTGCTACCGATC
* * ** ** * *
18250660 CTGCTACCGTAACCCTCGGTCCGGTCCGAT
130 CCGCTGCCACAACCCTCAATCCGGTCTGAG
* * * * * * * * * ** *
18250690 CTTAGAC-TAAGAATGAACTCTGTATACATAAGTCAACCCCCAAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
** * * * * * * * * * *
18250754 CCGACCGAAGAGGTATAATACACAAGCCAGGGATCGCCCCGGTCCCCCCCTGCGTGCTGCCGGTC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
* * * *
18250819 TCGCTGCCACAACCCTCGATCCGGAT-GGGG
130 CCGCTGCCACAACCCTCAATCCGG-TCTGAG
* * * * * ** * *
18250849 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAATGGGCGTGTGGGCGCCCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * * * * *
18250914 CGGTAGAAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCC-CTACGTGCTATCGATCT
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCC
* * ** * *
18250978 TGCTGTCGTAACCCTCGATCCGGTCTGAT
131 CGCTGCCACAACCCTCAATCCGGTCTGAG
18251007 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
18251034 TTATACTGGG
Statistics
Matches: 1011, Mismatches: 254, Indels: 58
0.76 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 122 0.12
158 402 0.40
159 477 0.47
160 9 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCC
CGCTGCCACAACCCTCAATCCGGTCTGAG
Found at i:18250450 original size:317 final size:316
Alignment explanation
Indices: 18249582--18251033 Score: 1707
Period size: 317 Copynumber: 4.6 Consensus size: 316
18249572 ACTCCGTATA
* *
18249582 CTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGG-GTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GGCGTGCGGGCGCTCAG
* *
18249646 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCAATCCCACCTGCGTGCTATCGATC-
65 CCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCTGCGTGCTATCGATCT
* * * *
18249710 CGACTGCCATAACCCTCAGTCCGGTCTGATCTTAGACTAGG-AATGAACTCCGTATGCATAAGTC
129 TG-CTACCGTAACCCTCAGTCCGGTCTGATCTTAGACT-GGAAATGAACTCTGTATGCATAAGTC
* * ** * ** *
18249774 AACCCATGAAACGAGCGTGCATGCACTGAGCCGGTCGAAGAGGCAAAATGTGCAAGCCGGGGATC
192 AACCCACGAAACGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATC
* ** * * * * * *
18249839 GGCCCGATCTGCCTCTGCATGCTACCGATCCCGCTGCCACAACCATCAATCCGGCTAGGG
257 GGCCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGG
* * *
18249899 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
* * ** * * * * * *
18249964 CGATCGGAGAGGCGGAATGCGTAAGTCGAGGATCGGCCCGAACCCCCTGCATACTATCGATCTTG
66 CGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCGTGCTATCGATCTTG
* * * *
18250029 CTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
131 CTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCAACC
* * * * *
18250094 CATGAAACGAGCGTGCAGGCACTGAGCTGATCGAAGAGGCATAATGCACAAGTCGAGGATCGACC
196 CACGAAACGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCGGCC
18250159 CGGTCCCCCTC-GACGTGCTACCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGG
261 CGGTCCCCCTCTG-CGTGCTACCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGG
* * * * *
18250215 CTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGGCGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
** * * *
18250280 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCTTGCGTGCTGTCGATCTT
66 CGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-TGCGTGCTATCGATCTT
** *
18250345 GCTACCACAACCCTCAGTCCGGTCTGATCTTAGATTGGAAATGAACTCTGTATGCATAAGTCAAC
130 GCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCAAC
* * * * * * *
18250410 CCACGAAACGAGCGTACAGGTACTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATTGGC
195 CCACGAAACGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCGGC
** * ** **
18250475 CCGGTCCCCCTCTATGTGCTGCCGGTCCCATTGCCACAACCCTCGATCCGGTTGGGG
260 CCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGG
* * * *
18250532 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
* * * * *
18250597 TGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCTC-AGTCCCCCCTGCGTCCTGTCGATCC
66 CGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGA-T-CCCCCTGCGTGCTATCGATCT
* * * *
18250661 TGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACT-AAGAATGAACTCTGTATACATAAGTCA
129 TGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGA-AATGAACTCTGTATGCATAAGTCA
* * * * ** * *
18250725 ACCCCCAAAATGAGCGTGCGGGTGCTGAGCCGACCGAAGAGGTATAATACACAAGCC-AGGGATC
193 ACCCACGAAACGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGA-GGATC
* * * *
18250789 GCCCCGGTCCCCCCCTGCGTGCTGCCGGTCTCGCTGCCACAACCCTCGATCCGGA-TGGGG
257 GGCCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGATCC-GACTGGGG
* * * * *
18250849 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAATGGGCGTGTGGGCGCCCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
* * * * *
18250914 CGGTAGAAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCTT
66 CGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTGCGTGCTATCGATCTT
** * *
18250979 GCTGTCGTAACCCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
130 GCTACCGTAACCCTCAG-TCCGGTCTGATCTTAGACTGGAAATGAACTCTGTATGC
18251034 TTATACTGGG
Statistics
Matches: 967, Mismatches: 154, Indels: 28
0.84 0.13 0.02
Matches are distributed among these distances:
315 3 0.00
316 272 0.28
317 686 0.71
318 6 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
CGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCGTGCTATCGATCTTG
CTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCAACC
CACGAAACGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCGGCC
CGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGG
Found at i:18251036 original size:26 final size:26
Alignment explanation
Indices: 18251007--18251059 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18250997 CCGGTCTGAT
18251007 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
18251033 CTTATACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18251059 C
1 C
18251060 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18259022 original size:26 final size:26
Alignment explanation
Indices: 18258993--18259045 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18258983 CTGGTCCGAT
*
18258993 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
18259019 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
18259045 C
1 C
18259046 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:18259425 original size:26 final size:26
Alignment explanation
Indices: 18259374--18259426 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18259364 CTGATTTGAT
*
18259374 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18259400 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
18259426 C
1 C
18259427 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18259763 original size:159 final size:157
Alignment explanation
Indices: 18259399--18259828 Score: 436
Period size: 159 Copynumber: 2.7 Consensus size: 157
18259389 AACTTCATAT
* *
18259399 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * * * ****
18259464 CCAGTCGGAGAGGCAGAATGCGTAAGCCAGGAATCGACCCGATCTTCCCTGCGTGCTGTTTATCC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTC-CCCCTGCGTGCTACCGATCC
* * *
18259529 TGCTATCGTAACCCTCAGTTCGGTCCGA
130 CGCTACCATAACCCTCAGTTCGGTCCGA
* * * ** ** * *
18259557 TCTTAGAC-TGGGAATGAGCTCCGTGTGCCTAAGTTAACCCATAAAACGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
* *
18259621 GCCAGTCGGAGAGGC-GTAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCGTTGTGTGCTACCGG
65 GCCAGTCGGAGAGGCAG-AATGCGCAAGCCGGGGATCGGCCCGGTCCCCC--TGCGTGCTACCGA
* * *
18259685 TCCCGCTGCCATAACCCTC-GATTCGG-CTGGG
127 TCCCGCTACCATAACCCTCAG-TTCGGTC-CGA
* * * * * *
18259716 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAACGGGCGTGCGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* *
18259781 CCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC
18259829 CTGGATGCTG
Statistics
Matches: 219, Mismatches: 45, Indels: 15
0.78 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 92 0.42
159 120 0.55
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTACCGATCCC
GCTACCATAACCCTCAGTTCGGTCCGA
Found at i:18259911 original size:26 final size:26
Alignment explanation
Indices: 18259875--18259926 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18259865 CCAGTCCGAT
*
18259875 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
18259901 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18259927 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:18261085 original size:159 final size:157
Alignment explanation
Indices: 18260595--18261091 Score: 496
Period size: 158 Copynumber: 3.1 Consensus size: 157
18260585 GTGGCTCAAA
* * *
18260595 ATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTGCTCA
* * * * * * * * *
18260660 GCCGGCCAGAGAGGCAGAATGTGCAAGCTGAGGATCGACCCGATCCCCCTTGCTTGCTGTTGATC
66 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
*
18260725 CTGCTGCCGCAACCCTCGGTTCGGTCTG
131 CTGCTGCCGCAACCCTCGG-TCCGTCTG
* * * * * * * ** *
18260753 ATCTTAGAATGGGAATGACCTCCTTATGCATAAGTCAACCCATGAAATGAGTGTACAGGCACTGA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTGCTCA
* * * * * *
18260818 GCCGACCGAAGA-GCATAATGCGCAAGCCGGGGTTCGGCCCAATCCCCCTCTGCGTGCTGCCAAT
66 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGAT
* * *
18260882 -CTCGCTGCCACAACCCTTGGTCCGGCTGG
130 CCT-GCTGCCGCAACCCTCGGTCCGTCT-G
** * *
18260911 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGACGTACGGGTGCT
1 ATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAG-CGTACGGGTGCT
* * * * * * *
18260975 TAGCCGACCGGAGAGGTAGAATACGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTACTATCGA
64 CAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGA
* * *
18261040 TCCTGCTGTCGCAAACCTCGATCCAGTCTG
129 TCCTGCTGCCGCAACCCTCGGTCC-GTCTG
18261070 ATCTTAGACTGGGAATGAACTC
1 ATCTTAGACTGGGAATGAACTC
18261092 TGTATGCTTA
Statistics
Matches: 265, Mismatches: 65, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
157 36 0.14
158 129 0.49
159 66 0.25
160 34 0.13
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTGCTCA
GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
CTGCTGCCGCAACCCTCGGTCCGTCTG
Found at i:18262255 original size:26 final size:26
Alignment explanation
Indices: 18262217--18262269 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18262207 GGCTCAAAAT
18262217 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18262243 CTTAGACAT-GGAATGACCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18262269 C
1 C
18262270 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18263630 original size:26 final size:26
Alignment explanation
Indices: 18263594--18263646 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18263584 CCTGTCTAAT
18263594 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
18263620 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18263646 C
1 C
18263647 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18264058 original size:683 final size:682
Alignment explanation
Indices: 18263119--18264699 Score: 1879
Period size: 683 Copynumber: 2.3 Consensus size: 682
18263109 AACTTCGTAT
* *
18263119 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
* * * * * * *
18263184 TCAGCCAGAGAGGTAGAATGCACAAGCCGAGGATCAGCCC-GTACCCCCTACGTGTTGTCGATCC
66 TCAGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGT-CCCCCTACGTGCTATCAATCT
* * * * *
18263248 TGCTACCACAACCCTCGGTCTGGTCTGATTTTAGACTGGGAATTAAC-TCAGTATGCCTAAGTCA
130 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCA
* * *
18263312 ACCCACGAAATGAGCGTGTGGGCACTGAGCTAGTCGGAGAGGCATAATACGCAAGCTGGGGATCG
194 ACCCATGAAATGAGCGTGCGGGCACTGAGCTAGCCGGAGAGGCATAATACGCAAGCTGGGGATCG
** * * * * *
18263377 GCCTGGTCCCCTTCTGCGTGCTATCGGTCCCGCAGCCACAACCTTCGGTCCGACAGGGGCTTAGA
259 GCCCAGTCCCCTACTGCATGCTATCAGTCCCGCAGCCACAACCTTAGATCCGACAGGGGCTTAGA
*
18263442 CATGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAGCCGGCCA
324 CATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAGCCGGCCA
* * *
18263507 GAGAGGCAGAAT-TCACAAGCCGAGGATCAACTCGATCCCCCCTGCGTGCTACCGATCCTACTGC
389 GAGAGGCAAAATGT-ACAAGCCGAGGATCAACCCGAT-CCCCCTACGTGCTACCGATCCTACTGC
* * * **
18263571 CATAACCCTCGGTCCTG-TCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATG
452 CATAACCCTCAGTCC-GATATAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGGATG
* *
18263635 AACTCTGTATGCCTAAGTCAACCCACGAAACAAGC-ATGCGGGAGCTCAGCCAACCAAAGAGGCT
516 AACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGATG-GGG-GCTCAGCCAACCAAAGAGGCC
* * ** * * * *
18263699 GGATGAAGAGGCATAATGTGTAAGCCGAGGATCAGCTCGGTCCCCCTTTGCGTGCTGCCGATCTC
579 GAACGAAGAGGCATAATACGCAAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCTC
* * * ** ** *
18263764 GCTGCCGGTCCTGCTGTCACAACCCTTGGTCCAACTGGG
644 GATGCCGATCCTACTACCACAACCCTCAGTCCAACTGAG
* *
18263803 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAA-CCACGAAACGAGCTTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
* * *
18263867 TCTG-CGGAAAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCTCCCCTGCGTGCTATCAATCT
66 TCAGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTC-CCCCTACGTGCTATCAATCT
*
18263931 TGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
130 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
** * * *
18263996 CCCATGAAATGAGCGTGCGGGCGTTGGGTTAGCCGGAGAGGCATAATGCGCAAG-TCGGGGATCG
195 CCCATGAAATGAGCGTGCGGGCACTGAGCTAGCCGGAGAGGCATAATACGCAAGCT-GGGGATCG
* * ** * ***
18264060 GCCCAGTCCGCTACTGCATGCTGTCAGTCTTGCTGCCACAACCTTAGATCCGGTTGGGGCTTAGA
259 GCCCAGTCCCCTACTGCATGCTATCAGTCCCGCAGCCACAACCTTAGATCCGACAGGGGCTTAGA
* ** * *
18264125 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGCCG
324 CATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAGCCGGCCA
* * * * *
18264190 GAGAGGCAAAATGTGCAAGCCGAGGATCAGCCCGATCCCCCTACGTGCTACCGATCCTGCTGTCG
389 GAGAGGCAAAATGTACAAGCCGAGGATCAACCCGATCCCCCTACGTGCTACCGATCCTACTGCCA
*
18264255 TAACCCTCAGTCCGATATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGGATGAAC
454 TAACCCTCAGTCCGATATAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGGATGAAC
* * *** **
18264320 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTATGGGGGCTCAGCCGGTCGGAGAGGCCGAAC
519 TCCGTATGCCTAAGTCAACCCACGAAACAAGCG-ATGGGGGCTCAGCCAACCAAAGAGGCCGAAC
* *
18264385 GGAGAGGCATAATACGCAAGCCAAGGATTAGCCCGGTCCCCCTCTGCGTGCTGCCGATCTCGATG
583 GAAGAGGCATAATACGCAAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCTCGATG
* * * *
18264450 CCGATCCTATTACCACAACCCTCAGTTCGATTGAG
648 CCGATCCTACTACCACAACCCTCAGTCCAACTGAG
* * * **
18264485 GCTTAGACATGGAATGAACTTCG-ATTGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTA-TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCA
** * * * *
18264549 ACCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATAGGCCCGATCCCCCCTACGTGCTATCGATC
65 GTCAGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGT-CCCCCTACGTGCTATC-A--
* * *
18264614 CTACTGCTGGTTCTACTGTCGCAACCCGT-GATCCGGTCCGATCTTAGACT-GGAATGAACTCCG
126 --A-T-CT--TGCTAC---CGCAACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCG
*
18264677 TATGCCTAAGCCAACCCATGAAA
181 TATGCCTAAGTCAACCCATGAAA
18264700 CCAGCATGCG
Statistics
Matches: 758, Mismatches: 114, Indels: 39
0.83 0.13 0.04
Matches are distributed among these distances:
681 2 0.00
682 274 0.36
683 320 0.42
684 89 0.12
685 2 0.00
689 1 0.00
690 1 0.00
691 2 0.00
693 5 0.01
695 34 0.04
696 27 0.04
697 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (682 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
TCAGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTACGTGCTATCAATCTT
GCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
CCATGAAATGAGCGTGCGGGCACTGAGCTAGCCGGAGAGGCATAATACGCAAGCTGGGGATCGGC
CCAGTCCCCTACTGCATGCTATCAGTCCCGCAGCCACAACCTTAGATCCGACAGGGGCTTAGACA
TGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAGCCGGCCAGA
GAGGCAAAATGTACAAGCCGAGGATCAACCCGATCCCCCTACGTGCTACCGATCCTACTGCCATA
ACCCTCAGTCCGATATAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGGATGAACTC
CGTATGCCTAAGTCAACCCACGAAACAAGCGATGGGGGCTCAGCCAACCAAAGAGGCCGAACGAA
GAGGCATAATACGCAAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCTCGATGCCG
ATCCTACTACCACAACCCTCAGTCCAACTGAG
Found at i:18264217 original size:159 final size:158
Alignment explanation
Indices: 18263799--18264222 Score: 433
Period size: 159 Copynumber: 2.7 Consensus size: 158
18263789 TTGGTCCAAC
* * * *
18263799 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAA-CCACGAAACGAGCTTGCGGGGGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGC
* * * * * * * *
18263863 TCAGTCTG-CGGAAAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCTCCCCTGCGTGCTATCA
66 TCAGTCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCTCCACTGCATGCTATCA
* * *
18263927 ATCTTGCTACCGCAACCCTCGGTCCGGT
131 ATCTTGCTACCACAACCCTAGATCCGGT
***** * * *
18263955 CCAATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCG
1 TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCG
* ** * * * *
18264019 TTGGGTTAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCAGTC-CGCTACTGCATGCTG
65 CTCAGTCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCTC-C-ACTGCATGCTA
* * *
18264083 TCAGTCTTGCTGCCACAACCTTAGATCCGGT
128 TCAATCTTGCTACCACAACCCTAGATCCGGT
* *
18264114 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGC
* * * * *
18264179 TCAGCCGGCCGGAGAGGCAAAATGTGCAAGCCGAGGATCAGCCC
66 TCAGTCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCC
18264223 GATCCCCCTA
Statistics
Matches: 209, Mismatches: 53, Indels: 9
0.77 0.20 0.03
Matches are distributed among these distances:
155 1 0.00
156 31 0.15
157 23 0.11
158 34 0.16
159 119 0.57
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.19
Consensus pattern (158 bp):
TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGC
TCAGTCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCTCCACTGCATGCTATCA
ATCTTGCTACCACAACCCTAGATCCGGT
Found at i:18265695 original size:11 final size:11
Alignment explanation
Indices: 18265675--18265718 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
18265665 ACGAAATGAA
18265675 CTCCGACGATG
1 CTCCGACGATG
*
18265686 CTCCGGCGATG
1 CTCCGACGATG
*
18265697 CTCCGACGATC
1 CTCCGACGATG
*
18265708 CTCCGGCGATG
1 CTCCGACGATG
18265719 GTGCCCCGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.14, C:0.39, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:18265703 original size:22 final size:22
Alignment explanation
Indices: 18265675--18265718 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
18265665 ACGAAATGAA
*
18265675 CTCCGACGATGCTCCGGCGATG
1 CTCCGACGATCCTCCGGCGATG
18265697 CTCCGACGATCCTCCGGCGATG
1 CTCCGACGATCCTCCGGCGATG
18265719 GTGCCCCGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.14, C:0.39, G:0.30, T:0.18
Consensus pattern (22 bp):
CTCCGACGATCCTCCGGCGATG
Found at i:18268092 original size:26 final size:26
Alignment explanation
Indices: 18268054--18268106 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18268044 GGCTCAAACT
18268054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18268080 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18268106 C
1 C
18268107 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18268379 original size:158 final size:158
Alignment explanation
Indices: 18268079--18268382 Score: 353
Period size: 158 Copynumber: 1.9 Consensus size: 158
18268069 AACTCCGTAT
* ** * *
18268079 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGTCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCACAAAACGAGCGTGCGGTCGCTCAG
* * * * * *
18268144 CCGACTAGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGATACCCTCTGCGTGCTACCAGACT
66 CCGACTAGAGAGGCAGAATGCACAAGCCGAGGATCGACTCGATACCCCCTACATCCTACCAGACC
*
18268209 TGCTGCCACAACCCTCAATCCGGCTGGG
131 TGCTACCACAACCCTCAATCCGGCTGGG
* *
18268237 GCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCACAAAACGGGTGTGCGGTCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCACAAAACGAGCGTGCGGTCGCTCAG
* * * * * * * *
18268302 CCG-GTCGGAGAGGTAGAATGCGCAAGTCGAGGATCGGCGT-GGTCCCCCCTACATCCTACC-GA
66 CCGACT-AGAGAGGCAGAATGCACAAGCCGAGGATCGAC-TCGATACCCCCTACATCCTACCAGA
*
18268364 TCCTGCTACCGCAACCCTC
129 -CCTGCTACCACAACCCTC
18268383 GGTCTGGTTA
Statistics
Matches: 120, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.03
158 116 0.97
159 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCACAAAACGAGCGTGCGGTCGCTCAG
CCGACTAGAGAGGCAGAATGCACAAGCCGAGGATCGACTCGATACCCCCTACATCCTACCAGACC
TGCTACCACAACCCTCAATCCGGCTGGG
Found at i:18268437 original size:26 final size:26
Alignment explanation
Indices: 18268396--18268448 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18268386 CTGGTTAGAT
18268396 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
18268422 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18268448 C
1 C
18268449 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18268643 original size:26 final size:26
Alignment explanation
Indices: 18268605--18268657 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18268595 CTGATTCGAT
*
18268605 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18268631 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18268657 C
1 C
18268658 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18269703 original size:26 final size:26
Alignment explanation
Indices: 18269674--18269723 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18269664 GATTCGATCT
18269674 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
** *
18269700 TAGACTGGGGGTGAACTCTGTATG
1 TAGACTGGGAATGAACTCCGTATG
18269724 TCTAAGTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:18269968 original size:356 final size:356
Alignment explanation
Indices: 18269441--18270094 Score: 889
Period size: 356 Copynumber: 1.8 Consensus size: 356
18269431 GCAGAATGCG
* * * * * *
18269441 CAAGCCGAGGATCAGCCTGGTCCCCCTCTGCATGCTGCCGGTCCCGCTGCCATAACCCTCGGTCT
1 CAAGCCGAGGATCAGCCCGGTCCCCCTCTACATGCTACCGATCCCGCTACCAAAACCCTCGGTCT
* * * * * **
18269506 GACTAGGGTTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
66 AACTAGGGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCGTGCGGG
* * * * *
18269571 CACTCAGCCGGCCGGAGAGGCAGAATGCACAAGCGAGGGATCGGCCCGGT-CCCCCCTGCGTGCT
131 CACTCAGCCGACCGAAGAGGCAGAATACACAAGCCAGGGATCGGCCCGATCCCCCCCTGCGTGCT
* * * * * *
18269635 GTCGATCCTGCTGTAGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCA
196 GTCGATCCTGCTGCAGCAACCCTCGATCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCA
** *
18269700 TAGAC-TGGGGGTGAACTCTGTATGTCTAAGTCAACCCATGAAACGAGAGTACGGGCGCTCAGCC
261 TAGACAT-GGAATGAACTCTGTATGCCTAAG-CAACCCATGAAACGAGAGTACGGGCGCTCAGCC
18269764 CGCTGGAGAGGCCGACCGGAAATGCATAATCCA
324 CGCTGGAGAGGCCGACCGGAAATGCATAATCCA
* *
18269797 CAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTACCAAAACCCTCGGTCT
1 CAAGCCGAGGATCAGCCCGGTCCCCCTCTACATGCTACCGATCCCGCTACCAAAACCCTCGGTCT
* *
18269862 AATTGGGGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCGTGCGGG
66 AACTAGGGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCGTGCGGG
* * ** * *
18269927 CGCTCAGTCGACCGAAGAGGTGGAATACGCAAGCCAGGGATCGGCCCGATCCCCCCCTGTGTGCT
131 CACTCAGCCGACCGAAGAGGCAGAATACACAAGCCAGGGATCGGCCCGATCCCCCCCTGCGTGCT
* * * * *
18269992 GTCGATCCTGCTGCCGCATCGCTCGATCCAATCCAATCTTAGACTAGGAATGAACTTCGTATGCT
196 GTCGATCCTGCTGCAGCAACCCTCGATCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCA
*
18270057 TAGACATGGAATGAACTCTGTATGCCTAAGCCACCCAT
261 TAGACATGGAATGAACTCTGTATGCCTAAGCAACCCAT
18270095 ACCAGCTTGG
Statistics
Matches: 253, Mismatches: 43, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
356 160 0.63
357 92 0.36
358 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (356 bp):
CAAGCCGAGGATCAGCCCGGTCCCCCTCTACATGCTACCGATCCCGCTACCAAAACCCTCGGTCT
AACTAGGGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCGTGCGGG
CACTCAGCCGACCGAAGAGGCAGAATACACAAGCCAGGGATCGGCCCGATCCCCCCCTGCGTGCT
GTCGATCCTGCTGCAGCAACCCTCGATCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCA
TAGACATGGAATGAACTCTGTATGCCTAAGCAACCCATGAAACGAGAGTACGGGCGCTCAGCCCG
CTGGAGAGGCCGACCGGAAATGCATAATCCA
Found at i:18270067 original size:26 final size:26
Alignment explanation
Indices: 18270029--18270081 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18270019 CCAATCCAAT
18270029 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
18270055 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
18270081 C
1 C
18270082 CTAAGCCACC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:18271860 original size:26 final size:26
Alignment explanation
Indices: 18271822--18271874 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18271812 GGCTCTAACT
*
18271822 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
18271848 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18271874 C
1 C
18271875 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18273107 original size:26 final size:26
Alignment explanation
Indices: 18273071--18273123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18273061 CTAATTGGAT
18273071 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18273097 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18273123 C
1 C
18273124 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18273318 original size:26 final size:26
Alignment explanation
Indices: 18273280--18273332 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18273270 CCTGTCTGAT
18273280 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18273306 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18273332 C
1 C
18273333 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18273658 original size:26 final size:26
Alignment explanation
Indices: 18273622--18273674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18273612 CTAGTCCTAT
18273622 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
18273648 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18273674 C
1 C
18273675 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18273772 original size:551 final size:551
Alignment explanation
Indices: 18272728--18273922 Score: 1407
Period size: 551 Copynumber: 2.2 Consensus size: 551
18272718 TGGCTCAAAC
* * *
18272728 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACAAT-CAATGAACTCTGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
18272792 CCACGAAATGAGCGTATGGGAGCTCAGCCGGCCAAAGATGCAGAATGCGCAAGCTGGGGATCGGC
65 CCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAAAGAGGCAAAATGCGCAAGCTGAGGATCGGC
** *** * *
18272857 CCGGTCCCCCTCTGCATGTTGTTGGTCCCGCTGCCACAACCCTCAGTCTGGCTGGGCTTAGACAT
130 CCGGTCCCCCTCTGCATGCAGCCAGTCCCACTGCCACAACCCTCAGTCTGACTGGGCTTAGACAT
* * * * * *
18272922 GGAATGAATTCCCTATGCCTCAGCCAACCCACGAAACGGGCCTGCGGGCACTTAGCCGGCCGAAG
195 CGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACCTGCAGGCACTCAGCCGGCCGAAG
** * * * *
18272987 AGGCAGAATGCACAAGCTGGGGATCGGTTCGGTCCCACCGGTGTGCTGTCGATCCTGTTACCGTA
260 AGGCAGAATGCACAAGCTGGGGATCAATTCGGTCCCACCGGCGTGCTCTCGATCCTGCTACCGCA
* ** * *
18273052 ACCCTCGGTCTAATTGGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTT
325 ACCCTCAGTCTAATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC
* * ** * * *
18273117 CGTATGCCTAAGTTAACCCACAAAACGAGTGTGCGGGAGCTCAGTCGGCCTGAGAGGTCGACCGA
390 CGTATGCCAAAGTCAACCCACAAAACGAGCATACGGGAGCTCAGTCGGCCGGAGAGGCCGACCGA
* * * * *
18273182 AGAAGCAGAATGCGCAAGTCAGGGATCGACCTAGTCCCCCCTACGTTCTGTCGATCCTGCTGCTG
455 AGAAGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTACTGCTG
* * * * *
18273247 GTCTTGCTACCCCAATCCTCGATCCT-GTCTGA-
520 GTCCTGCTACCACAACCCTAGAT-CTAGTC-CAT
* *
18273279 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
18273344 CATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGCAAAATGCGCAAGTTGAGGATCGG-T
66 CACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAAAGAGGCAAAATGCGCAAGCTGAGGATCGGCC
* * * *
18273408 CGGTCCCCCTCTGCGTGCAGCCAGTCCCACTGCCAGAACCCTCGGTCTGATTGGGGCTTAGACAT
131 CGGTCCCCCTCTGCATGCAGCCAGTCCCACTGCCACAACCCTCAGTCTGACT-GGGCTTAGACAT
* * * * *
18273473 CGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGACGTGCAGGCGCTCAGTCGGCC-AGA
195 CGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACCTGCAGGCACTCAGCCGGCCGA-A
** * * **
18273537 GAGGCAGAATGTGCAAGCTGGGGATCAA-TCTGGTCCCCCCTGCGTGCTACT-GATCCTGCTGTC
259 GAGGCAGAATGCACAAGCTGGGGATCAATTC-GGTCCCACCGGCGTGCT-CTCGATCCTGCTACC
* * *
18273600 GCAACCCTCATTCTAGTCCTATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
322 GCAACCCTCAGTCTAATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
* * * * * **
18273665 CTCCGTATGCCAAAGTCAACCCACGAAATGAGCATACGGGCGCTTAGTCGGTCGGAGAGGCCGGT
387 CTCCGTATGCCAAAGTCAACCCACAAAACGAGCATACGGGAGCTCAGTCGGCCGGAGAGGCCGAC
* * * * * **
18273730 CGAAGAGGTAGAATGTGCAAGCCGGGGATC-AGCCCGGTCCCCCCTGTGTGCTGCCGATCCTACT
452 CGAAGAAGCAGAATGCGCAAGCCAGGGATCGA-CCCAGTCCCCCCTACGTGCTGCCGATCCTACT
* *
18273794 GCTGGTCCTGCTATCACAACCCTAGGTCTAGTCCAT
516 GCTGGTCCTGCTACCACAACCCTAGATCTAGTCCAT
* * *
18273830 TTTTAGACTCGGAATGAACTCCGTATGCTTAGACATGGTATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
18273895 CACGAAACGAGCGTGTGGGCGCTCAGCC
66 CACGAAACGAGCGTGTGGGCGCTCAGCC
18273923 AGTCGAAGAG
Statistics
Matches: 536, Mismatches: 100, Indels: 16
0.82 0.15 0.02
Matches are distributed among these distances:
550 50 0.09
551 485 0.90
552 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (551 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAAAGAGGCAAAATGCGCAAGCTGAGGATCGGCC
CGGTCCCCCTCTGCATGCAGCCAGTCCCACTGCCACAACCCTCAGTCTGACTGGGCTTAGACATC
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACCTGCAGGCACTCAGCCGGCCGAAGA
GGCAGAATGCACAAGCTGGGGATCAATTCGGTCCCACCGGCGTGCTCTCGATCCTGCTACCGCAA
CCCTCAGTCTAATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
GTATGCCAAAGTCAACCCACAAAACGAGCATACGGGAGCTCAGTCGGCCGGAGAGGCCGACCGAA
GAAGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTACTGCTGG
TCCTGCTACCACAACCCTAGATCTAGTCCAT
Found at i:18274078 original size:145 final size:146
Alignment explanation
Indices: 18273857--18274123 Score: 376
Period size: 145 Copynumber: 1.8 Consensus size: 146
18273847 ACTCCGTATG
* ** *
18273857 CTTAGACATGGTATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* *
18273922 CAGTCGAAGAGGTAGAATGCGTAAGTCGGGGACCAACCCGGTCCCCCCTACGTGCTGCCGCAACC
66 CAGTCGAAGAGGCAGAATGCGTAAGCCGGGGACCAACCCGGTCCCCCCTACGTGCTGCCGCAACC
18273987 CTCGGTTCGGTCCGAT
131 CTCGGTTCGGTCCGAT
* *
18274003 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* * * *** *
18274067 C-GATCGGAGAGGCATAATGCGTAAGCCGGGGATCGGTCCGGTCCCCCCTCCGTGCTG
66 CAG-TCGAAGAGGCAGAATGCGTAAGCCGGGGACCAACCCGGTCCCCCCTACGTGCTG
18274124 TCGGTCCCAC
Statistics
Matches: 105, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
144 1 0.01
145 97 0.92
146 7 0.07
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (146 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
CAGTCGAAGAGGCAGAATGCGTAAGCCGGGGACCAACCCGGTCCCCCCTACGTGCTGCCGCAACC
CTCGGTTCGGTCCGAT
Found at i:18274331 original size:158 final size:158
Alignment explanation
Indices: 18273976--18274336 Score: 370
Period size: 158 Copynumber: 2.3 Consensus size: 158
18273966 CCCCTACGTG
* * * * *
18273976 CTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACC
1 CTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * **
18274040 CACGAAACGAGCGTACGGGCGCTGAACCGATCGGAGAGGCATAATGCGTAAGCCGGGGATCGGTC
66 CACGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATCCGTAAGCCGGGGATCGACC
* *
18274105 CGGTCCCCCCTCCGTGCTGTCGGTCCCA
131 CGATCCCCCCTCCGTGCTGTCGATCCCA
* * ** *
18274133 CTACCACAACCCTC-AGTCCGG-CTGGGGCTTAGAC-ATGGAATGAACTCCCTATTCCTAAGCCA
1 CTGCCGCAACCCTCGA-TCCGGTCT-GATCTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * * *
18274195 ACCCATGAAATGGGTGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATCCGTAAGCTGGGGATCG
63 ACCCACGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATCCGTAAGCCGGGGATCG
** * *
18274260 ACCCGATCCTTCCTGCGTGCTGTCGATCCTA
128 ACCCGATCCCCCCTCCGTGCTGTCGATCCCA
* *
18274291 CTGCCGCAACCCTCGACCCGGTCTGATCTTACACTAGGAATGAACT
1 CTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACT
18274337 TCGTATGCTT
Statistics
Matches: 160, Mismatches: 37, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.01
157 24 0.15
158 131 0.82
159 4 0.03
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (158 bp):
CTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATCCGTAAGCCGGGGATCGACC
CGATCCCCCCTCCGTGCTGTCGATCCCA
Found at i:18276417 original size:158 final size:158
Alignment explanation
Indices: 18276114--18276400 Score: 382
Period size: 158 Copynumber: 1.8 Consensus size: 158
18276104 TCCGGTTGAT
* * *
18276114 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTACTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAGC
* * * * * *
18276179 CTGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCAGGTCCCCTCTGTGTGCTGCCGGTCCC
66 CGGCCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCAGGTCCCCTCTGCGTGCTGCCGATCCC
*
18276244 GCTACCACAACCCTCGATCTGGTTGGGG
131 ACTACCACAACCCTCGATCTGGTTGGGG
* * * *
18276272 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAG
1 CTTAGACTA-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAG
* *
18276336 CCGGCCGAAGAGGCAGAATACGTAAGCCGGGGACC-AGCCCGGTCCCC-CTTGCGTGCTGCCGAT
65 CCGGCCGAAGAGGCAGAATACGCAAGCCGGGGACCGA-CCAGGTCCCCTC-TGCGTGCTGCCGAT
18276399 CC
128 CC
18276401 TACTGTCGCG
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
157 3 0.03
158 108 0.97
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAGC
CGGCCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCAGGTCCCCTCTGCGTGCTGCCGATCCC
ACTACCACAACCCTCGATCTGGTTGGGG
Found at i:18276436 original size:158 final size:157
Alignment explanation
Indices: 18276095--18276456 Score: 381
Period size: 158 Copynumber: 2.3 Consensus size: 157
18276085 CTACTGCCGT
* * *
18276095 AACCCTCGGTCCGGTTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC
1 AACCCTCGGACCGGTTGATCTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCACGAAAC
* * * * *
18276160 GAGCGTGCGGGTACTGAGCCTGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCAGGTCCCC
66 GAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCAGGTCCCC
* * *
18276225 TCTGTGTGCTGCCGGTCCCGCTACCAC
131 TCTGCGTGCTGCCGATCCCACTACCAC
* ** * *
18276252 AACCCTC-GATCTGGTTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 AACCCTCGGA-CCGGTT-GATCTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCCACGA
* * * * *
18276315 AACGGGCGTGCGGGCGCTTAGCCGGCCGAAGAGGCAGAATACGTAAGCCGGGGACC-AGCCCGGT
63 AACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCAGAATACGCAAGCCGGGGACCGA-CCAGGT
* ** *
18276379 CCCC-CTTGCGTGCTGCCGATCCTACTGTCGC
127 CCCCTC-TGCGTGCTGCCGATCCCACTACCAC
* * * *
18276410 GACCCTCGGACCAGTTCGATCATAGACTGGGAATGAACTCCATATGC
1 AACCCTCGGACCGGTT-GATCTTAGACTAGGAATGAACTCCATATGC
18276457 TTAGGCTGGG
Statistics
Matches: 165, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.01
157 15 0.09
158 147 0.89
159 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
AACCCTCGGACCGGTTGATCTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCACGAAAC
GAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCAGGTCCCC
TCTGCGTGCTGCCGATCCCACTACCAC
Found at i:18276472 original size:26 final size:26
Alignment explanation
Indices: 18276436--18276485 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18276426 CGATCATAGA
18276436 CTGGGAATGAACTCCATATGCTTAGG
1 CTGGGAATGAACTCCATATGCTTAGG
*
18276462 CTGGGGATGAACTCCATATGCTTA
1 CTGGGAATGAACTCCATATGCTTA
18276486 AGTAAACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTGGGAATGAACTCCATATGCTTAGG
Found at i:18277183 original size:26 final size:26
Alignment explanation
Indices: 18277154--18277205 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18277144 GCTTAAAATA
18277154 TTAGAC-TGTGAATGAACT-TCGTATGC
1 TTAGACATG-GAATGAACTCT-GTATGC
18277180 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCTGTATGC
18277206 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCTGTATGC
Found at i:18277882 original size:26 final size:26
Alignment explanation
Indices: 18277845--18277896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18277835 GGCTCAAATT
*
18277845 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
18277871 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
18277897 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:18278173 original size:158 final size:157
Alignment explanation
Indices: 18277870--18278469 Score: 480
Period size: 158 Copynumber: 3.8 Consensus size: 157
18277860 ACTCCGTATG
* * * *
18277870 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGC
* ** * * * * * * * * * * **
18277935 TGGTCGGAGAAGCAGAATGCGTAAGCCGGGGATC-AGTCGGGTCCCCCTCTACGTGCTATCGATC
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGA-CCCGATCCCCTTCTGCGTGCTGCCGATC
* * *
18277999 CTGCTGCTGTAACCCTCGGTCCGGTCCT-AT
130 TTGCTGC-AT-ACCCTCGGTTCGGT-CTGAT
**
18278029 CTTAGAC-TGGAATGAACTCCGTATGCATAAGTAAACCCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGC
* * *
18278093 CGGCCGAAGAGGCATAATGTGCAAGCCGAGGATCGACCCAATCCCCTTCTGCGTGCTGCC-AGTC
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCTTCTGCGTGCTGCCGA-TC
* **
18278157 TTGCTGGCATAGCCCTCGGTTC-GACTGGGG
130 TTGCT-GCATA-CCCTCGGTTCGGTCT-GAT
* * * * * * * *
18278187 CTTAGACATGGAATCAACGCCCTATGCCTGAGCCAACCCATGAAACGGGCATGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGC
* * * * * * * * * * *
18278252 CGATCGGAGAGGCAAAATACGTAAGCTGAGGATCGGCCTGATCCCC-CCAGCGTGCTGTCGATCC
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCTTCTGCGTGCTGCCGAT-C
* *
18278316 TACTACTGCA-ACCCTCAGTTCGGTCTGAT
130 T--TGCTGCATACCCTCGGTTCGGTCTGAT
* * **
18278345 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
* * * * *
18278409 CCTACAGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGAT-CCCTCTCTGCGTGCTGCC
65 CCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCT-TCTGCGTGCTGCC
18278470 AGTCCCACTG
Statistics
Matches: 343, Mismatches: 83, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 7 0.02
158 219 0.64
159 109 0.32
160 3 0.01
161 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGC
CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCTTCTGCGTGCTGCCGATCT
TGCTGCATACCCTCGGTTCGGTCTGAT
Found at i:18278463 original size:317 final size:317
Alignment explanation
Indices: 18277869--18278473 Score: 813
Period size: 317 Copynumber: 1.9 Consensus size: 317
18277859 AACTCCGTAT
* * * *
18277869 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATCAACGCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * * * *
18277934 CTGGTCGGAGAAGCAGAATGCGTAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGCTATCGATC
66 CCGATCGGAGAAGCAAAATACGTAAGCCGAGGATCAGCCGGATCCCCCTCTACGTGCTATCGATC
* * * *
18277999 CTGCTGCTGTAACCCTCGGTCCGGTCCTATCTTAGACTGGAATGAACTCCGTATGCATAAGTAAA
131 CTACTACTGCAACCCTCAGTCCGGTCCTATCTTAGACTGGAATGAACTCCGTATGCATAAGTAAA
* * *
18278064 CCCATGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGTGCAAGCCGAGGATCGA
196 CCCATGAAACGAGCGTGCGGGCACTGAGCCGACAGAAGAGGCATAATGCGCAAGCCGAGGATCGA
18278129 CCCAATCCCCTTCTGCGTGCTGCCAGTCTTGCTGGCATAGCCCTCGGTTCGACTGGG
261 CCCAATCCCCTTCTGCGTGCTGCCAGTCTTGCTGGCATAGCCCTCGGTTCGACTGGG
* * * *
18278186 GCTTAGACATGGAATCAACGCCCTATGCCTGAGCCAACCCATGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATCAACGCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * *
18278251 CCGATCGGAGAGGCAAAATACGTAAGCTGAGGATCGGCCTGATCCCCC-C-AGCGTGCTGTCGAT
66 CCGATCGGAGAAGCAAAATACGTAAGCCGAGGATCAGCCGGATCCCCCTCTA-CGTGCTATCGAT
*
18278314 CCTACTACTGCAACCCTCAGTTCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
130 CCTACTACTGCAACCCTCAGTCCGGTCCT-ATCTTAGACT-GGAATGAACTCCGTATGCATAAGT
* * ** * * *
18278378 CAACCCATGAAATGAGCGTGCGGGTGCTGAGCCTACAGAAGAGGCATAATGCGCAAGTCGGGGAT
193 AAACCCATGAAACGAGCGTGCGGGCACTGAGCCGACAGAAGAGGCATAATGCGCAAGCCGAGGAT
* *
18278443 CGGCCCGAT-CCCTCTCTGCGTGCTGCCAGTC
258 CGACCCAATCCCCT-TCTGCGTGCTGCCAGTC
18278474 CCACTGCTCG
Statistics
Matches: 247, Mismatches: 37, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
315 3 0.01
316 47 0.19
317 197 0.80
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATCAACGCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
CCGATCGGAGAAGCAAAATACGTAAGCCGAGGATCAGCCGGATCCCCCTCTACGTGCTATCGATC
CTACTACTGCAACCCTCAGTCCGGTCCTATCTTAGACTGGAATGAACTCCGTATGCATAAGTAAA
CCCATGAAACGAGCGTGCGGGCACTGAGCCGACAGAAGAGGCATAATGCGCAAGCCGAGGATCGA
CCCAATCCCCTTCTGCGTGCTGCCAGTCTTGCTGGCATAGCCCTCGGTTCGACTGGG
Found at i:18278706 original size:26 final size:26
Alignment explanation
Indices: 18278654--18278706 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18278644 CCCGTCCGGT
* *
18278654 CTTAGACTAGGAATGAAATCTGTATG
1 CTTAGACTAGGAATGAAATCCGAATG
* *
18278680 CTTAGACTAGGGATGAACTCCGAATG
1 CTTAGACTAGGAATGAAATCCGAATG
18278706 C
1 C
18278707 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGAATG
Found at i:18279257 original size:26 final size:26
Alignment explanation
Indices: 18279228--18279280 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18279218 CTGGTCCGAT
* *
18279228 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCAGTATG
18279254 CTTAGACATGGAATAAACTCAGTATG
1 CTTAGACATGGAATAAACTCAGTATG
18279280 C
1 C
18279281 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCAGTATG
Found at i:18279749 original size:158 final size:158
Alignment explanation
Indices: 18279254--18279755 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 158
18279244 ACTCCGTATG
* * * *
18279254 CTTAGACATGGAATAAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18279319 TGGCCGGAGAGGCAAAATGCGTAAGCCGGAGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCT
66 TGGTCGGAGAGGCAAAATGAGCAAGCCGGGGATCGACCTAGTCCCCTCTGCGTGCTGTCGATCCT
* * * * *
18279384 GCTGCCTCAACCCTTGGTCCGATCCAAT
131 GCTGCCACAACCCTCGGTCTGGTCCGAT
* * * * * *
18279412 CTTAGA-TTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
18279476 CCGGTCGAAGAGCCATAATGAGCAAGCCAGGGACCGACC-CGATCCCCCTCTGCGTGCTGTCGAT
65 CTGGTCGGAGAGGCAAAATGAGCAAGCCGGGGATCGACCTAG-T-CCCCTCTGCGTGCTGTCGAT
* * * **
18279540 CCCGCTGCCACAACCCTCGGTTTGG-CTGGGG
128 CCTGCTGCCACAACCCTCGGTCTGGTC-CGAT
* * * *
18279571 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18279636 TGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCTAGTCCCCTATACGTGCTGTCGATCTT
66 TGGTCGGAGAGGCAAAATGAGCAAGCCGGGGATCGACCTAGTCCCCTCTGCGTGCTGTCGATCCT
*
18279701 GCTGCCGCAACCCTCGGTCTGGTCCGAT
131 GCTGCCACAACCCTCGGTCTGGTCCGAT
* *
18279729 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATAAACTCCGTATGC
18279756 TTAGATTGGG
Statistics
Matches: 275, Mismatches: 61, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 147 0.53
159 123 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGGTCGGAGAGGCAAAATGAGCAAGCCGGGGATCGACCTAGTCCCCTCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCTGGTCCGAT
Found at i:18279765 original size:26 final size:26
Alignment explanation
Indices: 18279729--18279781 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18279719 CTGGTCCGAT
18279729 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
18279755 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18279781 C
1 C
18279782 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18280948 original size:26 final size:26
Alignment explanation
Indices: 18280912--18280964 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18280902 CCGGTCCGAT
18280912 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18280938 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18280964 C
1 C
18280965 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18281510 original size:355 final size:357
Alignment explanation
Indices: 18280728--18282085 Score: 981
Period size: 355 Copynumber: 3.8 Consensus size: 357
18280718 TACCGGTCCC
* * * *
18280728 GCTGCCACAACCCTCGGTCCTGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * * * *
18280793 CCATGAAACGGGCGTGCAGGTTAC-CAGCCGGCAGGAGAGGCAGAATGCGTAAACTGGGGATCGA
66 CCATGAAACGAGCGTGC-GGGTGCTCAACCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGG
* * * * * **
18280857 C-CTGGT-CTCCT-GT-GTG-CTAT-C-GATCCT-G--CT-AT-CGCAACCCTCGATCCGGTCCG
130 CTC-GATCCCCCTCGTGGTGTCGATCCTGATGCTGGTCCTGATGCG-AACCCTCGGTTTGGTCCG
* * * *
18280910 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GGGGATGAACTCTGTATGCCTAAGTCTA
193 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-TATGGAATGAACTCCGTATGCCTAAG-CAA
* * ** **
18280974 CCCATGAAACGAGCATGCAGGC-ACTCAGTCGGCCGGAGATGCCGGTCGGAGAGGCATAATGTGC
256 CCCATGAAACGAGCGTGCGGGCGA-TCAACCGGCC--AGA----------A-AGGCATAATACGC
* * ** * * * * * * *
18281038 AAGCCAGGGATTAGCCC-GATCCCCCTCTACGTGCTACCGATCCCGTTTCCGGTCTT
307 AACCCAAGGATCGGCCCAGA-CCCCCTCTGCTTGCGA-C--TCAC--TGCCGATCCT
*
18281094 GCTGCCACAACCCTCGG-TCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAA
1 GCTGCCACAACCCTCGGTTC-GGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18281158 CCCATGAAACAAGCGTGTGGGTGCTCAACCGACCGGAGAGGTAGAATGGGCAAGCCGGGGATCGG
65 CCCATGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGG
* * * * * *
18281223 CCCGGTCCCTCCTGCGTGGTGTCGATCCTGTTGCTGGTCCTGCTGTCGTAACCCTCGGTCTGATC
130 CTCGATCCC-CCT-CGTGGTGTCGATCCTGATGCTGGTCCTGATG-CG-AACCCTCGGTTTGGTC
* *
18281288 CAATCTTAGACTGGGAATGAACTCTGCATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCGA
191 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGC-A
* * ** ** * ** **
18281353 ACCCATGAAACGAGCGTGCGGGCGATGAGCCGGCTGGAAAGGTGTAATACGTAAGTCGGGGATCG
255 ACCCATGAAACGAGCGTGCGGGCGATCAACCGGCCAGAAAGGCATAATACGCAACCCAAGGATCG
* *
18281418 GCTC-GATCCCC-CT-C-TG-GA-T-ACTGCCGATCCT
320 GCCCAGACCCCCTCTGCTTGCGACTCACTGCCGATCCT
* * *
18281449 GCTGCCACAACCCTCGGTTCGACTGCGGCATAGACATGGAATGAACT-CGCTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAA
* * * * *
18281513 CCCACGAAACGGGCGTGCAGGTGCTCAACCGACCTGAGAGGTAGAATGCGCAAGCTGGGGATCGG
65 CCCATGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGG
* *
18281578 CTCGATCCCCCT--T-GTGT-GCTGCC-AATGCT-G--CT-ATGCG-ACCCTCGGTTTGGTCCGA
130 CTCGATCCCCCTCGTGGTGTCGAT-CCTGATGCTGGTCCTGATGCGAACCCTCGGTTTGGTCCGA
* * * *
18281633 TCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTA-GGGATAAACTCCGTATGCCTAAGTCAAC
194 TCTTAGACTGGGAATGAACTCTGTATGCTTAGA-TATGGAATGAACTCCGTATGCCTAAG-CAAC
* * * * * ** *
18281697 CCACGAAACGAGCGTGCGGGTGCTCAATCGGCCAGAGAGGCATAATGTGCCACCCAAGGATCGGC
257 CCATGAAACGAGCGTGCGGGCGATCAACCGGCCAGAAAGGCATAATACGCAACCCAAGGATCGGC
* *
18281762 CCAGACCCCCTCTGCATGTTGTCGATCTCGCTGCCGATCTT
322 CCAGACCCCCTCTGC---TTG-CGA-CTCACTGCCGATCCT
* * * *
18281803 GCTACCACAACCCTCAGTTTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * * * *
18281868 CCATGAAACGAGCATGCGGGTGCTCAGTC-AGTCGGAGGGGCAGAATGCACAAGCCGAGGATTGG
66 CCATGAAACGAGCGTGCGGGTGCTCAACCGA-CCGGAGAGGTAGAATGCGCAAGCCGGGGATCGG
* ** * * * *
18281932 CTCGATCCACCCCTACGTGCTACCGATCTTGCTGCTGGTCCTGTTGCCGCAACCTTCGGTTTGGT
130 CTCGAT-C-CCCCT-CGTGGTGTCGATCCTGATGCTGGTCCTGATG-CG-AACCCTCGGTTTGGT
* * * *
18281997 CTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCA
190 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCA
* *
18282062 ACCCATGAAACGAACGTACGGGCG
255 ACCCATGAAACGAGCGTGCGGGCG
18282086 CTCAGTCGAT
Statistics
Matches: 790, Mismatches: 147, Indels: 109
0.76 0.14 0.10
Matches are distributed among these distances:
342 116 0.15
343 9 0.01
344 4 0.01
345 3 0.00
346 2 0.00
348 1 0.00
349 8 0.01
350 6 0.01
351 3 0.00
353 2 0.00
354 124 0.16
355 128 0.16
356 7 0.01
357 1 0.00
358 1 0.00
359 1 0.00
360 2 0.00
361 6 0.01
362 2 0.00
363 2 0.00
364 3 0.00
365 9 0.01
366 113 0.14
367 47 0.06
368 70 0.09
370 2 0.00
371 3 0.00
372 3 0.00
373 1 0.00
374 4 0.01
375 1 0.00
377 2 0.00
378 3 0.00
379 2 0.00
380 98 0.12
381 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (357 bp):
GCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGC
TCGATCCCCCTCGTGGTGTCGATCCTGATGCTGGTCCTGATGCGAACCCTCGGTTTGGTCCGATC
TTAGACTGGGAATGAACTCTGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCAACCCAT
GAAACGAGCGTGCGGGCGATCAACCGGCCAGAAAGGCATAATACGCAACCCAAGGATCGGCCCAG
ACCCCCTCTGCTTGCGACTCACTGCCGATCCT
Found at i:18281663 original size:26 final size:26
Alignment explanation
Indices: 18281634--18281686 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18281624 TTGGTCCGAT
*
18281634 CTTAGACT-GGGAGTGAACTCCGTATG
1 CTTAGACTAGGGA-TAAACTCCGTATG
18281660 CTTAGACTAGGGATAAACTCCGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
18281686 C
1 C
18281687 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:18282067 original size:709 final size:713
Alignment explanation
Indices: 18280728--18282085 Score: 1664
Period size: 709 Copynumber: 1.9 Consensus size: 713
18280718 TACCGGTCCC
* * *
18280728 GCTGCCACAACCCTCGGTCCTGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCTGCTGCGGCATAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * * *
18280793 CCATGAAACGGGCGTGCAGGTTACCAGCCGGCAGGAGAGGCAGAATGCGTAAACTGGGGATCGAC
66 CCACGAAACGGGCGTGCAGGTTACCAACCGACAGGAGAGGCAGAATGCGCAAACTGGGGATCGAC
* * * *
18280858 CTGGTCTCCTGTGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
131 CTGATCCCCTGTGTGCTACCAATCCTGCTATCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
* * * * * *
18280923 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCTACCCATGAAACGAGC
196 AATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * *
18280988 ATGCAGGCACTCAGTCGGCCGGAGATGCCGGTCGGAGAGGCATAATGTGCAAGCCAGGGATTAGC
261 ATGCAGG----C-GTC-GCC-GAGAT-CCGGCCAGAGAGGCATAATGTGCAACCCAAGGATCAGC
* * * * * *
18281053 CCGATCCCCCTCTACGTGCTACCGATCCCGTTTCCGGTCTTGCTGCCACAACCCTCGGTCTGGCT
318 CCGATCCCCCTCTACATGCTACCGATCCCGCTGCCGATCTTGCTACCACAACCCTCAGTCTGGCT
* * *
18281118 GGGGCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCATGAAACAAGCGTGTGGGTGCT
383 GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGTGCT
* * ** * * * * * **
18281183 CAACCGACCGGAGAGGTAGAATGGGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGGTGTCGA
448 CAACAGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTACCGA
* * *
18281248 TCCTGTTGCTGGTCCTGCTGTCGTAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCT
513 TCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCT
* * *
18281313 GCATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAGCGTGCGGGCGA
578 GCATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAACGTACGGGCGA
18281378 TGAGCCGGCTGGAAAGGTGTAATACGTAAGTCGGGGATCGGCTCGATCCCCCTCTGGATACTGCC
643 TGAGCCGGCTGGAAAGGTGTAATACGTAAGTCGGGGATCGGCTCGATCCCCCTCTGGATACTGCC
18281443 GATCCT
708 GATCCT
*
18281449 GCTGCCACAACCCTCGGTTC-GACTGCGGCATAGACATGGAATGAACTC-GCTATGCCTAAGCCA
1 GCTGCCACAACCCTCGGTCCTG-CTGCGGCATAGACATGGAATGAACTCTG-TATGCCTAAGCCA
* ** * *
18281512 ACCCACGAAACGGGCGTGCAGG-TGCTCAACCGACCTGAGAGGTAGAATGCGCAAGCTGGGGATC
64 ACCCACGAAACGGGCGTGCAGGTTAC-CAACCGACAGGAGAGGCAGAATGCGCAAACTGGGGATC
* * * * * **
18281576 G-GCTCGATCCCCCTTGTGTGCTGCCAATGCTGCTAT-GCGACCCTCGGTTTGGTCCGATCTTAG
128 GACCT-GAT-CCCC-TGTGTGCTACCAATCCTGCTATCGCAACCCTCGATCCGGTCCGATCTTAG
*
18281639 ACTGGGAGTGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACGAA
190 ACTGGGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
18281704 ACGAGCGTGC-GG-GT-GCTC-A-AT-CGGCCAGAGAGGCATAATGTGCCACCCAAGGATCGGCC
255 ACGAGCATGCAGGCGTCGC-CGAGATCCGGCCAGAGAGGCATAATGTGCAACCCAAGGATCAGCC
* * ** * * *
18281763 CAGA-CCCCCTCTGCATGTTGTCGATCTCGCTGCCGATCTTGCTACCACAACCCTCAGTTTGGTT
319 C-GATCCCCCTCTACATGCTACCGATCCCGCTGCCGATCTTGCTACCACAACCCTCAGTCTGGCT
*
18281827 GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCT
383 GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGTGCT
* * * * *
18281892 CAGTCAG-TCGGAGGGGCAGAATGCACAAGCCGAGGATTGGCTCGATCCACCCCTACGTGCTACC
448 CA-ACAGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCC-CCCCTACGTGCTACC
* * * * * ** *
18281956 GATCTTGCTGCTGGTCCTGTTGCCGCAACCTTCGGTTTGGTCTGATCTTAGATTGGGAATGAACT
511 GATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACT
* *
18282021 CTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGC-AACCCATGAAACGAACGTACGGGC
576 CTGCATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAACGTACGGGC
18282085 G
641 G
18282086 CTCAGTCGAT
Statistics
Matches: 539, Mismatches: 88, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
709 197 0.37
710 105 0.19
711 2 0.00
712 1 0.00
713 2 0.00
714 1 0.00
715 2 0.00
720 6 0.01
721 112 0.21
722 93 0.17
723 18 0.03
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (713 bp):
GCTGCCACAACCCTCGGTCCTGCTGCGGCATAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
CCACGAAACGGGCGTGCAGGTTACCAACCGACAGGAGAGGCAGAATGCGCAAACTGGGGATCGAC
CTGATCCCCTGTGTGCTACCAATCCTGCTATCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
ATGCAGGCGTCGCCGAGATCCGGCCAGAGAGGCATAATGTGCAACCCAAGGATCAGCCCGATCCC
CCTCTACATGCTACCGATCCCGCTGCCGATCTTGCTACCACAACCCTCAGTCTGGCTGGGGCTTA
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGTGCTCAACAGAC
CGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCTGCTG
CTGGTCCTGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCTGCATGCTT
AGACATGGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAACGTACGGGCGATGAGCCGG
CTGGAAAGGTGTAATACGTAAGTCGGGGATCGGCTCGATCCCCCTCTGGATACTGCCGATCCT
Found at i:18282507 original size:26 final size:26
Alignment explanation
Indices: 18282469--18282521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18282459 CTGGTCGGAT
* *
18282469 CTTAGACTTGGAATGCACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18282495 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18282521 C
1 C
18282522 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18282855 original size:158 final size:158
Alignment explanation
Indices: 18282655--18283144 Score: 495
Period size: 158 Copynumber: 3.1 Consensus size: 158
18282645 TGGCTGGGGT
* *
18282655 TTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCTTACGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
* *
18282720 GGCTGGAGAGGCAGAATGC-TCAAGCCGGGGATCGGCCCGATCCCCCCTATGTGGTGTCGATCTT
66 GGCTGGAGAGGCAGAATGCGT-AAGCCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCCT
* *
18282784 GCTACCGCAACCCTCGGTCCGATCTTATC
130 GCTGCCGCAACCCTCGGTCCGATCTGATC
* * * * * *
18282813 TTAGACTGGGAATGAACTCCGTTTGCATAAGTCAACCTACGAAACGAGCGTACGGGCGCTGAGCC
1 TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
* * * * * * * * * *
18282878 GACCGAAGAGGCATAATACGTAAACCGGGGATTGGCCCGGT-CCCCCTCTGCATGCTGCCGATCC
66 GGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTATG--TGCTGTCGATCC
*** * * * **
18282942 CATTGCCACAACACTCGGTCCG-GCTGGGGC
129 TGCTGCCGCAACCCTCGGTCCGATCT-GATC
* * * * * *
18282972 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGTGCTCAGT
1 TTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * ** *
18283036 CGG-TCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCC
65 CGGCT-GGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCC
*
18283100 TGCTGCCGCAACCTTCGGTCCGATCTGATC
129 TGCTGCCGCAACCCTCGGTCCGATCTGATC
*
18283130 CTAGACTGGGAATGA
1 TTAGACTGGGAATGA
18283145 CCTCGTATGC
Statistics
Matches: 256, Mismatches: 67, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 9 0.04
158 130 0.51
159 109 0.43
160 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
GGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGATCTGATC
Found at i:18282922 original size:317 final size:317
Alignment explanation
Indices: 18282495--18283154 Score: 808
Period size: 317 Copynumber: 2.1 Consensus size: 317
18282485 ACTCCGTATG
* * * * * * *
18282495 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGTGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTACGGGCGCTGAGC
* * ** * * * ** *
18282560 CGGCCAGAGAGGCATAATGCGCAAGTCGAGGATGGGCCTGGTCCCCTTCTACCTGCGGGTGGTCC
66 CGACCAGAGAGGCATAATACGCAAACCGAGGATGGGCCCGGTCCCCCTCTACATGCGGCCGATCC
* *
18282625 CACTGCCACAAC-CTTCGGTCTGGCTGGGGTTTAGACAGGGAATGAACTCCCTATGCCTAAGCCA
131 CACTGCCACAACAC-TCGGTCCGGCTGGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCA
* * *
18282689 ACCCACGAAACGAGCTTACGGGCGCTCAGCCGG-CTGGAGAGGCAGAATGC-TCAAGCCGGGGAT
195 ACCCACAAAACGAGCGTACGAGCGCTCAGCCGGTC-GGAGAGGCAGAATGCGT-AAGCCGGGGAT
* * * * * *
18282752 CGGCCCGATCCCCCCTATGTGGTGTCGATCTTGCTACCGCAACCCTCGGTCCGATCTTAT
258 CGACCCGATCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGATCTGAT
* * *
18282812 CTTAGACTGGGAATGAACTCCGTTTGCATAAGTCAACCTACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTACGGGCGCTGAGC
* * * * *
18282877 CGACC-GAAGAGGCATAATACGTAAACCGGGGATTGGCCCGGTCCCCCTCTGCATGCTGCCGATC
66 CGACCAG-AGAGGCATAATACGCAAACCGAGGATGGGCCCGGTCCCCCTCTACATGCGGCCGATC
* *
18282941 CCATTGCCACAACACTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCACTGCCACAACACTCGGTCCGGCTGGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
18283006 ACCCACAAAACGGGCGTGCGAGTGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCG
195 ACCCACAAAACGAGCGTACGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCG
* * * *
18283071 ACCTGATCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCTTCGGTCCGATCTGAT
260 ACCCGATCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGATCTGAT
* *
18283129 CCTAGACTGGGAATGACCT-CGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18283155 TTAGACTGGG
Statistics
Matches: 289, Mismatches: 50, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
316 7 0.02
317 279 0.97
318 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTACGGGCGCTGAGC
CGACCAGAGAGGCATAATACGCAAACCGAGGATGGGCCCGGTCCCCCTCTACATGCGGCCGATCC
CACTGCCACAACACTCGGTCCGGCTGGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACGAGCGTACGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGA
CCCGATCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGATCTGAT
Found at i:18283082 original size:159 final size:157
Alignment explanation
Indices: 18282494--18283121 Score: 485
Period size: 159 Copynumber: 4.0 Consensus size: 157
18282484 CACTCCGTAT
* * * * * * * * *
18282494 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGTGTTGAG
1 GCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * * * * ** *
18282559 CCGGCCAGAGAGGCATAATGCGCAAGTCGAGGATGGGCCTGGTCCCCTTCTACCTGCGGGTGGTC
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCT-GCTGCTGCCGATC
*
18282624 CCACTGCCACAACCTTCGGTCTGGCTGGG
130 CCACTGCCACAACC-TCGGTCCGGCTGGG
* *
18282653 GTTTAGAC-AGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCTTACGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * *
18282717 GCCGGCTGGAGAGGCAGAATGC-TCAAGCCGGGGATCGGCCCGATCCCCCCTATG-TGGTGTCGA
65 GCCGGCCGGAGAGGCAGAATGCGT-AAGCCGGGGATCGGCCCGAT-CCCCCTCTGCTGCTGCCGA
*** * * * **
18282780 TCTTGCTACCGCAACCCTCGGTCCGATCT-TA
128 TCCCACTGCCACAA-CCTCGGTCCG-GCTGGG
* * * * * * * *
18282811 TCTTAGACTGGGAATGAACTCCGTTTGCATAAGTCAACCTACGAAACGAGCGTACGGGCGCTGAG
1 GCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
18282876 CCGACCGAAGAGGCATAATACGTAAACCGGGGATTGGCCCGGTCCCCCTCTGCATGCTGCCGATC
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTGC-TGCTGCCGATC
*
18282941 CCATTGCCACAACACTCGGTCCGGCTGGG
130 CCACTGCCACAAC-CTCGGTCCGGCTGGG
* * * * *
18282970 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGTGCTCA
1 GCTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * **
18283034 GTCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCTGATCCCCC-CTGCGTGCTATCGAT
65 GCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTGC-TGCTGCCGAT
** *
18283098 CCTGCTGCCGCAACCTTCGGTCCG
129 CCCACTGCCACAACC-TCGGTCCG
18283122 ATCTGATCCT
Statistics
Matches: 357, Mismatches: 99, Indels: 27
0.74 0.20 0.06
Matches are distributed among these distances:
157 9 0.03
158 141 0.39
159 201 0.56
160 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTGCTGCTGCCGATCC
CACTGCCACAACCTCGGTCCGGCTGGG
Found at i:18283169 original size:25 final size:26
Alignment explanation
Indices: 18283131--18283180 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
18283121 GATCTGATCC
*
18283131 TAGACTGGGAATGACCT-CGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
18283156 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18283181 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18283803 original size:159 final size:157
Alignment explanation
Indices: 18283508--18284590 Score: 684
Period size: 159 Copynumber: 6.9 Consensus size: 157
18283498 AATTCTGTAT
*
18283508 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *** **
18283573 CCAGCTGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGATCCCCCCTTGCGTGCTGTTGATC
66 -CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCC-TGCGTGCTGCCGATC
* * * *
18283638 TTGCTACCGCAAACCTGGGTCCAGTCCGA
129 TAGCTACCACAACCCTCGGTCCAGTCCGA
* * * * *
18283667 TCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
** * * * * *
18283731 GTCGGCCAAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGGT
65 G-CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGAT
* * * * *
18283796 CTAGCTACCATAACCCTCGATCC-GGCTAGG
128 CTAGCTACCACAACCCTCGGTCCAGTC-CGA
* * *
18283826 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATG-AA--A---T---GG-----A-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * ** * *
18283876 CGTCCGTAGAGGCAGAATGCATAAGCTAGGGATCGACCCGATCCCCCCTGCGTGCT-CTCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGC-CGAT-C
* ** ** *
18283940 T-GCTGCCGTAACCCTCGGTCTGGTCCAA
129 TAGCTACCACAACCCTCGGTCCAGTCCGA
* * * * * * * * *
18283968 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTACGGGCATTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * *
18284032 GCGTACCAGAGAGGCATAATGCGCAAGCC-GAGGATCAGCCCGATCCCCCTCTACCTGCTGTCGG
65 GCG-GCCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGATCCCCC-CTGCGTGCTGCCGA
** * * * ** *
18284096 TCCCGCTGCCACAACCCTTGGTCCGGTTGGG
127 TCTAGCTACCACAACCCTCGGTCCAGTCCGA
* * * *
18284127 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * ** * * *
18284192 TCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGATCTGATCCCCCCTGCATGCTGCCGATCC
66 -CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCT
* *
18284257 AGCTACCACAACCCTCAGTCCAGTCCAA
130 AGCTACCACAACCCTCGGTCCAGTCCGA
* * * * * * *
18284285 ACTTAGAC-TGGGAATGAACTCCGTATGCCTTAGTCAACCCATGAAACGAACATACGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * *
18284349 GCCGACTGGAGAGGCATAATACGCAAGCCAGGGATCAGCTCGATCCCCCTCTGCGTGCTGTCGAT
65 G-CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGAT
* ** ** *
18284414 CCCGCTGCCGATCCTGCTGCCACAACCCTTAGT-CAGTTGGG
128 ----CT----A----GCTACCACAACCCTCGGTCCAGTCCGA
* * *
18284455 GCTTGGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * ** *
18284520 CCAGTCGGAGAGGCAGAATGCACAAACC-GAGGATCGGCTCGGTCCCCCCTGTATGATGCCGATC
66 -CGGCCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
*
18284584 TTGCTAC
129 TAGCTAC
18284591 TGGTCCTGCT
Statistics
Matches: 699, Mismatches: 178, Indels: 96
0.72 0.18 0.10
Matches are distributed among these distances:
141 2 0.00
142 61 0.09
143 43 0.06
145 2 0.00
148 1 0.00
150 2 0.00
151 2 0.00
153 1 0.00
156 2 0.00
157 8 0.01
158 159 0.23
159 284 0.41
160 4 0.01
163 1 0.00
165 2 0.00
167 1 0.00
169 12 0.02
170 95 0.14
171 17 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCTA
GCTACCACAACCCTCGGTCCAGTCCGA
Found at i:18284131 original size:301 final size:307
Alignment explanation
Indices: 18283581--18284422 Score: 910
Period size: 301 Copynumber: 2.7 Consensus size: 307
18283571 AGCCAGCTGG
* * * * * *
18283581 AGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGATCCCCCCTTGCGTGCTGTTGATCTTGCTACC
1 AGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCC-TGCGTGCTCTCGATCCTGCTACC
* * * *
18283646 GCAAACCTGGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGA
65 GCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * * *
18283711 AACGAGCGTGCGGGCGCTGAGTCGGCCAAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTC
130 AACGAGCGTACGGGCACTAAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATC
* * ** * *
18283776 CCCCTCTGCGTGTTGCCGGTCTAGCTACCATAACCCTCGATCCGGCTAGGGCTTAGACATGGAAT
195 CCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAAT
* *
18283841 GAACTCCCTATGCCTAAGCCAACACATGAAA-T-G-G-AC-GT-CCGT
260 GAACTCCCTATGCCTAAGCCAACACACGAAAGTGGCGCACAGTACCGA
** *
18283883 AGAGGCAGAATGCATAAGCTAGGGATCGACCCGATCCCCCCTGCGTGCTCTCGATCCTGCTGCCG
1 AGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTGCGTGCTCTCGATCCTGCTACCG
* ** * *
18283948 TAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
66 CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
18284013 ATGAGTGTACGGGCATTAAG-CGTACCAGAGAGGCATAATGCGCAAGCC-GAGGATCAGCCCGAT
131 ACGAGCGTACGGGCACTAAGCCG-ACCAGAGAGGCATAATGCGCAAGCCAG-GGATCAGCCCGAT
* * * * * *
18284076 CCCCCTCTACCTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCCGGTTGGGGCTTAGACATGGAA
194 CCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAA
* *
18284141 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGTCAGCCGA
259 TGAACTCCCTATGCCTAAGCCAACACACGAAA-----GT---GGCGCACAGT-A-CCGA
* * * * * *
18284200 AGAGGCAGAATGCGCAAGCCAAGGATCGATCTGATCCCCCCTGCATGCTGC-CGATCCAGCTACC
1 AGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTGCGTGCT-CTCGATCCTGCTACC
* * * * *
18284264 ACAACCCTCAGTCCAGTCCAAACTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCATGA
65 GCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * ** * *
18284329 AACGAACATACGGGCACTCAGCCGACTGGAGAGGCATAATACGCAAGCCAGGGATCAGCTCGATC
130 AACGAGCGTACGGGCACTAAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATC
*
18284394 CCCCTCTGCGTGCTGTCGATCCCGCTGCC
195 CCCCTCTGCGTGCTGTCGGTCCCGCTGCC
18284423 GATCCTGCTG
Statistics
Matches: 442, Mismatches: 77, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
300 3 0.01
301 206 0.47
302 36 0.08
307 1 0.00
311 1 0.00
312 1 0.00
313 1 0.00
314 2 0.00
317 187 0.42
318 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (307 bp):
AGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTGCGTGCTCTCGATCCTGCTACCG
CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTACGGGCACTAAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCC
CCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATG
AACTCCCTATGCCTAAGCCAACACACGAAAGTGGCGCACAGTACCGA
Found at i:18285163 original size:26 final size:26
Alignment explanation
Indices: 18285134--18285183 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18285124 ATCTGATCTT
*
18285134 AGACTGGGAATGAACTTCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
*
18285160 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
18285184 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:18285882 original size:26 final size:26
Alignment explanation
Indices: 18285844--18285896 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18285834 GGCTTAAAAT
18285844 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18285870 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18285896 C
1 C
18285897 CTAACCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18286399 original size:26 final size:26
Alignment explanation
Indices: 18286344--18286399 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
18286334 CCGGTTCCAT
* *
18286344 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATC
* * *
18286370 CTTAGACTGGGGATGAACTCTATTTC
1 CTTAGACTGGGAATGAACTCCATATC
18286396 CTTA
1 CTTA
18286400 AGCCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATC
Found at i:18286748 original size:26 final size:26
Alignment explanation
Indices: 18286718--18286771 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
18286708 TCCGATCTGA
*
18286718 GCTTAGAC-TAGGAATGAAGTCCGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
*
18286744 GCTTAGACATGGAATGAACTCTGTAT
1 GCTTAGACATGGAATGAACTCCGTAT
18286770 GC
1 GC
18286772 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACATGGAATGAACTCCGTAT
Found at i:18286999 original size:159 final size:158
Alignment explanation
Indices: 18286735--18287246 Score: 516
Period size: 159 Copynumber: 3.2 Consensus size: 158
18286725 CTAGGAATGA
* * *
18286735 AGTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTCAGCCAACCCACAAAAAGAGCGTGCG
1 AGTCCG-AT-CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCG
* * * *
18286800 GGCGCTCAGTCGGTCGGAGAGGCAGAATACGT-AAGTCGGGGACCGACCCGGTCCCTCCCTGCAT
64 GGCGCTCAGCCGGTCGGAGAGGCAGAAT-CTTCAAGTCGGGGATCGACCCGGTCCC-CCCTGCGT
* * *
18286864 GCTGTCGATCCTGCTACCGTAACCCTCAGTCC
127 GCTGCCGATCCTACTACCGCAACCCTCAGTCC
* * * * *
18286896 AGTCCGATCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGG
1 AGTCCGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGG
* * * *
18286960 GCGTTGAGCCAGTCGGAGAGGCATAATCTTCAAGTCGGGGATC-AGCCCGGT-CCCCCTCGACGT
65 GCGCTCAGCCGGTCGGAGAGGCAGAATCTTCAAGTCGGGGATCGA-CCCGGTCCCCCCT-G-CGT
* * * * *
18287023 GCTGCCGGTCCCACTGCCACAACACTCAGTCC
127 GCTGCCGATCCTACTACCGCAACCCTCAGTCC
* * ** * *
18287055 -GACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGCGTGCGG
1 AGTC-CGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGG
* * ** ** *
18287119 GCGCTCAGCCGGTCGGAGAGGCAGAAT-TCACAAGCCGGGGATCGGTCCGACCCCCCCTACGTGC
65 GCGCTCAGCCGGTCGGAGAGGCAGAATCT-TCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGC
* * *
18287183 TACCGATCCTACTATCGCAACCCTCGGTCC
129 TGCCGATCCTACTACCGCAACCCTCAGTCC
*
18287213 AGTCTGATCTTAGAC-TGGAATGAACTCCGTATGC
1 AGTCCGATCTTAGACATGGAATGAACTCCGTATGC
18287247 TTGACTGGGG
Statistics
Matches: 281, Mismatches: 59, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 22 0.08
158 45 0.16
159 199 0.71
160 9 0.03
161 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
AGTCCGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGG
CGCTCAGCCGGTCGGAGAGGCAGAATCTTCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTG
CCGATCCTACTACCGCAACCCTCAGTCC
Found at i:18287616 original size:26 final size:26
Alignment explanation
Indices: 18287587--18287638 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18287577 CGGTCTGATG
18287587 TTAGAC-TGGGAACGAACTCCGTATGC
1 TTAGACAT-GGAACGAACTCCGTATGC
*
18287613 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAACGAACTCCGTATGC
18287639 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACATGGAACGAACTCCGTATGC
Found at i:18288514 original size:26 final size:26
Alignment explanation
Indices: 18288476--18288528 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18288466 GGCTCAAAAT
*
18288476 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18288502 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18288528 C
1 C
18288529 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18288994 original size:157 final size:157
Alignment explanation
Indices: 18288511--18289001 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 157
18288501 GCTTAGACAT
* ** **
18288511 GGAATGAACTCCATATGCCTAAGCCAACCCAGGAAACGAGCGTGTGGGCACTCAGTCTATCGAAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGCT-GAAG
** * * * * *
18288576 AGGCAGAATGATCAAGCCGGGGATCGGCCC-GACCCCCCTTACGTGCTATCGATCCTGCTGTCGC
65 AGGCAGAATGCGCAAGCCGGGGAT-AGCCCGGTCCCCTC-TGCGTGCTGTCGATCCTGCTGTCGC
* * *
18288640 AACCCTCGATCCAGT-TCGATCTTAGACTG
128 AACCCTCGGTCCGGTCTCGATCTTAGGCTG
* * * * * * * *
18288669 GGAATGAACTTCGTATGCATAAGTCAACCCACAAAATGAGCGTGTGGGTGCTGAGCCAGCTGAAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAGTC-GCTGAAG
* * * * * *
18288734 AGGCATAATGCGCAAGCCAGGGATAGACCCGGTCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACA
65 AGGCAGAATGCGCAAGCCGGGGATAG-CCCGGTCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCA
* * ** * *
18288799 ACCCTCAGTCCGG-CTGGGGCTTA-GATAT
129 ACCCTCGGTCCGGTCTCGATCTTAGGCT-G
* *
18288827 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGT-TCGGGTGCTCAGTCGGCT-AG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGTGCTCAGTC-GCTGA-
* * * * *
18288890 AGAAGCAGAATGCGCAAGTCGGGGATAGCCCGGTCCCCTCTGCGTGCTGCCAATCCTACTGTCGC
63 AGAGGCAGAATGCGCAAGCCGGGGATAGCCCGGTCCCCTCTGCGTGCTGTCGATCCTGCTGTCGC
*
18288955 AACCCTCGGTCTGGTCT-GATCTTAGGCTG
128 AACCCTCGGTCCGGTCTCGATCTTAGGCTG
18288984 GGAATGAACTCCATATGC
1 GGAATGAACTCCATATGC
18289002 TTAGACTAGG
Statistics
Matches: 261, Mismatches: 63, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
157 68 0.26
158 186 0.71
159 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGCTGAAGA
GGCAGAATGCGCAAGCCGGGGATAGCCCGGTCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAAC
CCTCGGTCCGGTCTCGATCTTAGGCTG
Found at i:18289535 original size:185 final size:185
Alignment explanation
Indices: 18289190--18289585 Score: 497
Period size: 185 Copynumber: 2.1 Consensus size: 185
18289180 GCTCAAAATA
*
18289190 TTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATATGCTTAAGCCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCA
* * * *
18289255 CGTAACCAGTGTGCGGGTGCTCAATCGGCCAGAGAGGCAGAATGCACAAGCCAAGGATCGGCCTG
66 CGAAACCAGTGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCAAGGATCGGCCTG
** ** * ** *
18289320 GTCCCCTCCTGCATGTTACCAATGCTGCTGCTGCAACCCTCGGTCCGGTCCGATC
131 GTCCCCTCCAACATACTACCAATCCTGCTGCCACAACCCTCAGTCCGGTCCGATC
* * * * **
18289375 TTAGATTGGGAAGGAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCA
* * ** ** * *
18289440 CGAAACGAGTGTGTGGGCGCTCAACCGACTGGAGAGGCAGAATGCGTAAGTCAGGGATCGGCCTG
66 CGAAACCAGTGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCAAGGATCGGCCTG
* * * *
18289505 GTCCTCC-CCAACTTACTATCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATC
131 GTCC-CCTCCAACATACTACCAATCCTGCTGCCACAACCCTCAGTCCGGTCCGATC
18289560 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18289586 CTAAGTCAAC
Statistics
Matches: 176, Mismatches: 34, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
185 174 0.99
186 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (185 bp):
TTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCA
CGAAACCAGTGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCAAGGATCGGCCTG
GTCCCCTCCAACATACTACCAATCCTGCTGCCACAACCCTCAGTCCGGTCCGATC
Found at i:18289694 original size:159 final size:157
Alignment explanation
Indices: 18289399--18289863 Score: 492
Period size: 159 Copynumber: 2.9 Consensus size: 157
18289389 AACTTCGTAT
* * * *
18289399 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAGCGTGCGGGCGCTCA
* * * * * * * *
18289463 ACC-GACTGGAGAGGCAGAATGCGTAAGTCAGG-GATCGGCCTGGTCCTCCCCAACTTACTATCG
64 GCCAGAC-GGAGAGGCAGAATGCGCAA-ACCGGAGATCGACCTGGTCCT-CCCTACGTGCTATCG
18289526 ATCCTGCTGCCACAACCCTCAGTCCGGTCT-GA
126 ATCCTGCTGCCACAACCCTCAGTCCGG-CTAGA
* * * *
18289558 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAGCGTGCGGGCGCTCAG
* *
18289623 CCAGTCGGAGAGGCATAATGCGCAAACCGGAGATCGACCTGGTCCTCCTCTACGTGCTATCGATC
65 CCAGACGGAGAGGCAGAATGCGCAAACCGGAGATCGACCTGGTCCTCC-CTACGTGCTATCGATC
* ** *
18289688 CCGCTGCCACAACCCTTGGTCCGGCTAGG
129 CTGCTGCCACAACCCTCAGTCCGGCTAGA
* *
18289717 GCTTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCA
1 GCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGA-GCGTGCGGGCGCTCA
* ** * **
18289781 GCCAGCCAAAGAGGCAGAATGCGCAAGCC-GAGGATCGACCCAGTCCCTCCCTACGTGCTATCGA
64 GCCAGACGGAGAGGCAGAATGCGCAAACCGGA-GATCGACCTGGT-CCTCCCTACGTGCTATCGA
**
18289845 TCCTGCTGCTGCAACCCTC
127 TCCTGCTGCCACAACCCTC
18289864 GATTCGATCT
Statistics
Matches: 257, Mismatches: 40, Indels: 18
0.82 0.13 0.06
Matches are distributed among these distances:
158 12 0.05
159 238 0.93
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGAGCGTGCGGGCGCTCAGC
CAGACGGAGAGGCAGAATGCGCAAACCGGAGATCGACCTGGTCCTCCCTACGTGCTATCGATCCT
GCTGCCACAACCCTCAGTCCGGCTAGA
Found at i:18290632 original size:26 final size:26
Alignment explanation
Indices: 18290581--18290633 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18290571 CACTCAAAAT
* *
18290581 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18290607 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18290633 C
1 C
18290634 CTGAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18290979 original size:159 final size:158
Alignment explanation
Indices: 18290606--18291108 Score: 523
Period size: 158 Copynumber: 3.2 Consensus size: 158
18290596 AACTTCGTAT
* **
18290606 GCTTAGACATGGAATGAACTCCATATGCCTGAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
18290671 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGCTCCCCCCTGCGTGCTGCCGATCC
** * *
18290736 TGCTGCCACAATCCTTAGTCCGGTCTGG
131 CACTGCCACAACCCTCAGTCCGGTCTGG
* *** * * *
18290764 TCTTAGAC-TAGGAATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
18290828 GCCGGCCGGAGAGGCATAATACGCAAGCTGGGGATCGGCCCGCTCCCCCTTTGCGTGTTGCC-AG
65 GCCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGCTCCCCC-CTGCGTGCTGCCGA-
* *
18290892 TCCCACTGCCACAACCCTCGGTCTGG-CTGGG
128 TCCCACTGCCACAACCCTCAGTCCGGTCT-GG
* * * *
18290923 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * ** * * * * *
18290988 TCGGTTGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCTGGTCCCCCCTGCGTGCTGCCGAT-C
66 CCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGCTCCCCCCTGCGTGCTGCCGATCC
* *
18291052 CAGCTGCCGCAACCCTC-GATCCGGTCTGA
131 CA-CTGCCACAACCCTCAG-TCCGGTCTGG
* *
18291081 TCTTAGAC-TGGGAATGAACTCTATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
18291109 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.02
158 150 0.53
159 125 0.44
160 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGCTCCCCCCTGCGTGCTGCCGATCC
CACTGCCACAACCCTCAGTCCGGTCTGG
Found at i:18291133 original size:26 final size:26
Alignment explanation
Indices: 18291082--18291134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18291072 CCGGTCTGAT
*
18291082 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18291108 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18291134 C
1 C
18291135 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18291402 original size:170 final size:171
Alignment explanation
Indices: 18291107--18291420 Score: 402
Period size: 170 Copynumber: 1.8 Consensus size: 171
18291097 AACTCTATAT
* * * *
18291107 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGATCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCAA
* * * * * *
18291172 CCAGCTGGAGAGGCATAATGCGTAAGCTGGGGATCAGCCCGGTCCCCATCTACATGCTGTCGATC
66 CCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCACCTACATGCTGTCGATC
18291237 CCGCTGCT-GTCCTACTACCACAACCCTCGGTCCGACTGGG
131 CCGCTGCTGGTCCTACTACCACAACCCTCGGTCCGACTGGG
* *
18291277 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTACTGGG-GCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGGCGATC
* * * * * *
18291340 AACC-GACCGGAGAGGCAAAATGTGCAAGCCGGGGATCGGCTCGATCCCCCCCTGCGTGCTGTCG
64 AACCAG-CCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCACCTACATGCTGTCG
*
18291404 ATCCCGTTGCTGGTCCT
128 ATCCCGCTGCTGGTCCT
18291421 GCTGTCGCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
169 1 0.01
170 111 0.92
171 9 0.07
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCAA
CCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCACCTACATGCTGTCGATC
CCGCTGCTGGTCCTACTACCACAACCCTCGGTCCGACTGGG
Found at i:18291893 original size:159 final size:159
Alignment explanation
Indices: 18291480--18291935 Score: 410
Period size: 159 Copynumber: 2.9 Consensus size: 159
18291470 CTATGCTTCA
* * * * * *
18291480 ACATGGAATGAACTCTGTATGCGTAAGCCAACCCATGAAACGAGCATGCGTCCCGGCGGTCAGCC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-G---GCGTACGGGCGCTCAGCC
* * * * *
18291545 GACGGAGGGGCAGAATGTGCAAGCCGGGGATCGACCAGATCCCCC-CTGCGTGCTGT-TGATCCT
62 GACGGAGAGGCAGAATGTGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCAGATCCC
* * * * *
18291608 GCTGCCGCAACCCTCGGTCCAGCCTGATCTTAG
127 ACTACCACAACCCTCAGTCCAGCCTGAGCTTAG
* * * * * * * *
18291641 ACGT-GACTGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTACGGGTGCTGAGCCGATC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGA-C
* ** *
18291705 GGAGAGGCAGAATGTACAAG-TCGACGATCGACCCGGTCCCCCTCTGCGTGCTGTCAG-TCCCAC
65 GGAGAGGCAGAATGTGCAAGCT-GGGGATCGACCCGATCCCCCTCTGCGTGCTGTCAGATCCCAC
* * *
18291768 TACCATAACCCTCAGTCC-GGCTGGGGCTTAG
129 TACCACAACCCTCAGTCCAGCCT-GAGCTTAG
* * * *
18291799 GCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGACC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGA-C
* * * *
18291864 AGAGAGGTAGAATGTGCAAGCTGGGGATCGGCCCGAT---CCTCTGCGTGCTGTC-GATCCTACT
65 GGAGAGGCAGAATGTGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCAGATCCCACT
*
18291925 ACCGCAACCCT
130 ACCACAACCCT
18291936 TGGTCTGGTC
Statistics
Matches: 233, Mismatches: 54, Indels: 21
0.76 0.18 0.07
Matches are distributed among these distances:
155 1 0.00
156 44 0.19
157 38 0.16
158 37 0.16
159 78 0.33
160 32 0.14
161 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGACG
GAGAGGCAGAATGTGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCAGATCCCACTA
CCACAACCCTCAGTCCAGCCTGAGCTTAG
Found at i:18291986 original size:26 final size:26
Alignment explanation
Indices: 18291950--18292002 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18291940 CTGGTCTAAT
*
18291950 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
18291976 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18292002 C
1 C
18292003 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18292710 original size:26 final size:26
Alignment explanation
Indices: 18292672--18292724 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18292662 GGCTCAAAAT
18292672 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18292698 CTTAGAC-ATGGAATTAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
18292724 C
1 C
18292725 CTAAGCAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18292892 original size:26 final size:26
Alignment explanation
Indices: 18292856--18292908 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18292846 CTGATCCAAT
*
18292856 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18292882 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18292908 C
1 C
18292909 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18293301 original size:157 final size:159
Alignment explanation
Indices: 18293011--18293347 Score: 364
Period size: 157 Copynumber: 2.1 Consensus size: 159
18293001 GCTGCTGGTC
* * *
18293011 CCCGCTGCCACAACCCTCGGTACAGCTGGGGCTTAGACATGGAATAACTCCTTATGGCTAAGCCA
1 CCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATAACTCCCTATGGCTAAGCCA
* * * * * *** * *
18293076 AACCCACGAAATGGGTGCTGAGGGCGCTCAGCTGGTTGGAGAGGCAGAATGCGCAAATCGGGGAT
66 AACCCACGAAATGGGCGCTCAGGGCACTCAACCGGCCAGAGAGGCAGAATGCGCAAACCAGGGAT
* *
18293141 CAGCCTGATCCCCCCTACGTTCTGTCAAT
131 CAGCCCGATCCCCCCTACGTGCTGTCAAT
*
18293170 CCCGCTACCACAACCCTCAGTCC-GACTGGGGGCTTAGACA-GGAATGAAC-CCCTAT-GCTAAG
1 CCCGCTGCCACAACCCTCAGTCCAG-CT-GGGGCTTAGACATGGAAT-AACTCCCTATGGCTAAG
* *
18293231 CC-AACCCACGAAAT-GGCGCTACAGGTCACTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAG
63 CCAAACCCACGAAATGGGCGCT-CAGGGCACTCAACCGGCCAGAGAGGCAGAATGCGCAAACCAG
* * * * *
18293294 GGTTCAGCCCGGTCCTCCTTACGTGCTGTCGAT
127 GGATCAGCCCGATCCCCCCTACGTGCTGTCAAT
* *
18293327 CCTGCTGTC-CAACCCTCAGTC
1 CCCGCTGCCACAACCCTCAGTC
18293348 TGATCCATCT
Statistics
Matches: 148, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
156 17 0.11
157 75 0.51
158 9 0.06
159 32 0.22
160 15 0.10
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (159 bp):
CCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATAACTCCCTATGGCTAAGCCA
AACCCACGAAATGGGCGCTCAGGGCACTCAACCGGCCAGAGAGGCAGAATGCGCAAACCAGGGAT
CAGCCCGATCCCCCCTACGTGCTGTCAAT
Found at i:18293395 original size:25 final size:25
Alignment explanation
Indices: 18293356--18293406 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
18293346 TCTGATCCAT
18293356 CTTAGACTGGAATGAACTTCGTATG
1 CTTAGACTGGAATGAACTTCGTATG
* *
18293381 CTTAGATTGGGATGAACTTCGTATG
1 CTTAGACTGGAATGAACTTCGTATG
18293406 C
1 C
18293407 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTTCGTATG
Found at i:18293751 original size:26 final size:26
Alignment explanation
Indices: 18293722--18293772 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18293712 CGGTCTGATC
*
18293722 TTAGAC-TGGGAATGAACTCTGTATGG
1 TTAGACAT-GGAATGAACTCCGTATGG
18293748 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
18293773 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:18294256 original size:26 final size:26
Alignment explanation
Indices: 18294220--18294272 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18294210 CTGGTCTGAT
18294220 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
* *
18294246 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18294272 C
1 C
18294273 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18294977 original size:26 final size:26
Alignment explanation
Indices: 18294939--18294991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18294929 GGTTCAAACT
18294939 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18294965 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18294991 C
1 C
18294992 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18295669 original size:26 final size:26
Alignment explanation
Indices: 18295628--18295680 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18295618 CTAGTCTGAT
* *
18295628 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACAGGGAATGAACCCAGTATG
* *
18295654 CTTAGACAGGGGATGAACTCAGTATG
1 CTTAGACAGGGAATGAACCCAGTATG
18295680 C
1 C
18295681 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACCCAGTATG
Found at i:18296094 original size:159 final size:158
Alignment explanation
Indices: 18295822--18296132 Score: 401
Period size: 159 Copynumber: 2.0 Consensus size: 158
18295812 GGTCTGGTTG
* *
18295822 GGGCTTAGACATGGAATGAACTTCGTAATCCTAAGCCAACCCACGAAACGAGCGTACGAGCTCTG
1 GGGCTTAGACATGGAATGAACTTCGTAATCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTC
* **
18295887 AGCCGACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGA
66 AGCCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCC-CTACGTGCTGTCGA
18295952 TCCCGCTACCACAACCCTCGGTCCAGCTA
130 TCCCGCTACCACAACCCTCGGTCCAGCTA
* * * *
18295981 GGGCTTAGACATGGAATGAAC-TCTGT-ATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCAC
1 GGGCTTAGACATGGAATGAACTTC-GTAAT-CCTAAGCCAACCCACGAAACGAGCGTACGAGCAC
* ** * * * *
18296044 TCAGTCGGTCGGGGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCG
64 TCAGCCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCG
* * **
18296109 ATCCTGCTGCCGTAACCCTCGGTC
129 ATCCCGCTACCACAACCCTCGGTC
18296133 TGGTCCAACC
Statistics
Matches: 130, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
158 36 0.28
159 94 0.72
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
GGGCTTAGACATGGAATGAACTTCGTAATCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTC
AGCCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
CCCGCTACCACAACCCTCGGTCCAGCTA
Found at i:18296171 original size:26 final size:26
Alignment explanation
Indices: 18296142--18296194 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18296132 CTGGTCCAAC
*
18296142 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18296168 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18296194 C
1 C
18296195 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18296790 original size:11 final size:11
Alignment explanation
Indices: 18296774--18296817 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
18296764 CGGTTAGGCT
18296774 CTCCGGTGATG
1 CTCCGGTGATG
18296785 CTCCGGTGATG
1 CTCCGGTGATG
**
18296796 CTCCGACGATG
1 CTCCGGTGATG
*
18296807 CTCTGGTGATG
1 CTCCGGTGATG
18296818 GTGCCCCAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.11, C:0.27, G:0.34, T:0.27
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:18296925 original size:26 final size:26
Alignment explanation
Indices: 18296887--18296939 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18296877 GGCTCAAACT
*
18296887 CTTAGACTAGGAATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18296913 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
18296939 C
1 C
18296940 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18297830 original size:26 final size:26
Alignment explanation
Indices: 18297792--18297844 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18297782 GGCTTAAACT
18297792 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18297818 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18297844 C
1 C
18297845 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18298877 original size:26 final size:26
Alignment explanation
Indices: 18298848--18298900 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18298838 TTGATCCGAT
18298848 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
18298874 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18298900 C
1 C
18298901 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18299249 original size:184 final size:184
Alignment explanation
Indices: 18299059--18299418 Score: 506
Period size: 184 Copynumber: 2.0 Consensus size: 184
18299049 TGGCTGGGGT
*
18299059 TTAGACATGGAATGAACTCCGTATGCCTCAA-CCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 TTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *
18299123 CGGCAGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
65 CGACAGAAAAGGTAAAATACGCAAGCCGGGGACCGACCCGATCCCCCCTGCATGCTGTCGATCCT
*
18299188 GCTACCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
130 ACTACCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
* *
18299243 TTAGACATGGAATGGACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
* * * * *
18299308 GACCGAAAAGGTAAAATACGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCATGCTGTCGATCCTA
66 GACAGAAAAGGTAAAATACGCAAGCCGGGGACCGACCCGATCCCCCCTGCATGCTGTCGATCCTA
** * ** * *
18299373 CTGTCATAACCCTTGGTTTGGTCTGATCTTAGACTGGGAATGAACT
131 CTACCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACT
18299419 TCGTATGCCT
Statistics
Matches: 153, Mismatches: 22, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
183 2 0.01
184 151 0.99
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
GACAGAAAAGGTAAAATACGCAAGCCGGGGACCGACCCGATCCCCCCTGCATGCTGTCGATCCTA
CTACCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
Found at i:18299254 original size:26 final size:26
Alignment explanation
Indices: 18299216--18299268 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18299206 TCGGTCCGAT
18299216 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18299242 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18299268 C
1 C
18299269 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18300653 original size:26 final size:26
Alignment explanation
Indices: 18300624--18300679 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18300614 TCGGTCCGAT
*
18300624 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATA
* *
18300650 CTTAGACTGGGGATGAACTCCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
18300676 CTTA
1 CTTA
18300680 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:18301027 original size:26 final size:26
Alignment explanation
Indices: 18300991--18301043 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18300981 CTGGTCTGAT
*
18300991 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18301017 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18301043 C
1 C
18301044 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18301145 original size:184 final size:184
Alignment explanation
Indices: 18300832--18301201 Score: 435
Period size: 184 Copynumber: 2.0 Consensus size: 184
18300822 TCTGGCTGGG
**
18300832 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTCAG
* * *
18300897 TCGGCAAGAGAGGCAGAATGCACAAGCCAAAGACCGGCTCGATCCCCCTTACGTGCTATCGATCC
66 CCGGCAAGAGAGGCAGAATGCACAAGCCAAAGACCGCCTAGATCCCCCTTACGTGCTATCGATCC
* * * * * *
18300962 TGCTACCGTAACCTTCGGTCTGGTCTGATCTTAGACAT-GGAATGAACTTCGTAT
131 TACTACCGCAACCCTCGATCTGATCTGATCTTAGAC-TGGGAATGAACTCCGTAT
* *
18301016 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTCAG
* ** **** * * * *
18301081 CCGATCGAA-A-AGGCAGAAATGCGTAAGCTGGGGATCGACCTAG-TCCCCC-TGCTTGCTGTCG
66 CCG-GC-AAGAGAGGCAG-AATGCACAAGCCAAAGACCG-CCTAGATCCCCCTTACGTGCTATCG
*
18301142 ATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
127 ATCCTACTACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
18301200 GC
1 GC
18301202 CTAAGTCAAC
Statistics
Matches: 156, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
183 1 0.01
184 129 0.83
185 21 0.13
186 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTCAG
CCGGCAAGAGAGGCAGAATGCACAAGCCAAAGACCGCCTAGATCCCCCTTACGTGCTATCGATCC
TACTACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:18301375 original size:26 final size:26
Alignment explanation
Indices: 18301346--18301398 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18301336 CCGATTCGAT
18301346 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18301372 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18301398 C
1 C
18301399 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18301664 original size:355 final size:355
Alignment explanation
Indices: 18300988--18301653 Score: 810
Period size: 356 Copynumber: 1.9 Consensus size: 355
18300978 GGTCTGGTCT
*
18300988 GATCTTAGACATGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACATGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * *
18301053 CCCACAAAACGAGTGTGCGGGCGCTCAGCCGATCGAAAAGGCAGAAATGCGTAAGCTGGGGATCG
66 CCCACAAAACGAGCGTACGGGCACTCAGCCGATCGAAAAGGCAGAAATGCACAAGCCGGGAATCG
* * * * * *
18301118 ACCTAGTCCCCCTGCTTGCTGTCGATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACT
131 ACCGAGTCCCCCTGCGTGCTGTCGAACCTACTACCGCAACCCTCGATCAGATCTGATCTAAGACT
* *
18301183 GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCGCTCAGCCGGTCAGA
196 GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGTCAGA
* * ** **
18301248 GGGGCAAAATGCGCAAGCTGAGGATCGGCCTGGTTTGCCCTTGCATGCTGCCGATCCTGCTGTTG
261 GAGGCAAAATGCGCAAGCTGAGGATCAGCCCAGTTCCCCCTTGCATGCTGCCGATCCTGCTGTTG
18301313 GTCCTGCTACCGCAAGCCTCGGTCCGATTC
326 GTCCTGCTACCGCAAGCCTCGGTCCGATTC
*
18301343 GATCTTAGAC-TAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
1 GATCTTAGACAT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* ** * *
18301407 ACCCATAAAACGAGCGTACGGGCACTCAGTTGGTC-AGAGAGGCAG-AATGCACAAGCCGAGGAA
65 ACCCACAAAACGAGCGTACGGGCACTCAGCCGATCGA-AAAGGCAGAAATGCACAAGCCG-GGAA
* *
18301470 T-GACCCGA-TCCCACCCTGCGTGCTGTCGAACCTACTATCGCAACCCTCGATCCAGTTC-GATC
128 TCGA-CCGAGT-CC-CCCTGCGTGCTGTCGAACCTACTACCGCAACCCTCGAT-CAGATCTGATC
* * * ** * * *
18301532 TAAGATTGGGAATGAACTCCGTATGCCTAAGTTAACCCATAAAACGAGCGTTTGGGCGTTGAGCT
189 TAAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
* * *
18301597 GG-CTGGAGAGGCATAATGTGCAAGCT-AGGGATCAGCCCAG-TCCCCCTCTGCATGCTG
254 GGTC-AGAGAGGCAAAATGCGCAAGCTGA-GGATCAGCCCAGTTCCCCCT-TGCATGCTG
18301654 TGGTCCTGCT
Statistics
Matches: 260, Mismatches: 41, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
354 15 0.06
355 111 0.43
356 130 0.50
357 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (355 bp):
GATCTTAGACATGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACAAAACGAGCGTACGGGCACTCAGCCGATCGAAAAGGCAGAAATGCACAAGCCGGGAATCG
ACCGAGTCCCCCTGCGTGCTGTCGAACCTACTACCGCAACCCTCGATCAGATCTGATCTAAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGTCAGA
GAGGCAAAATGCGCAAGCTGAGGATCAGCCCAGTTCCCCCTTGCATGCTGCCGATCCTGCTGTTG
GTCCTGCTACCGCAAGCCTCGGTCCGATTC
Found at i:18302169 original size:501 final size:501
Alignment explanation
Indices: 18301343--18302248 Score: 1164
Period size: 501 Copynumber: 1.8 Consensus size: 501
18301333 GGTCCGATTC
* * *
18301343 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAACCAA
* ***** *
18301408 CCCATAAAACGAGCGTACGGGCACTCAGTTGGTCAGAGAGGCAGAATGCACAAGCCGAGGAATGA
66 CCCATAAAACGAGCATACGGGCACTCAGCCAACCAGAGAGGCAAAATGCACAAGCCGAGGAATGA
* * * * *
18301473 CCCGATCCCACCCTGCGTGCTGTCGAACCTACTATCGCAACCCTCGATCCAGTTCGATCTAAGAT
131 CCCGATCCCACCCTGCGTGCTATCGAACCTACTATCGCAACCCTCGATACAGATCAATCTAAGAC
* * * * * * **
18301538 TGGGAATGAACTCCGTATGCCTAAGTTAACCCATAAAACGAGCGTTTGGGCGTTGAGCTGGCTGG
196 AGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAACGTTCGGACGTTGAGCCGGCCAG
* * *
18301603 AGAGGCATAATGTGCAAGCTAGGGATCAGCCCAGTCCCCCTCTGCATGCTGTGGTCCTGCTGCCA
261 AGAGGCATAACGTGCAAGCGAGGGATCAGCCCAGTCCCCCTCTGCATGCTGTGGTCCTACTGCCA
* *
18301668 CAACCCTCGGTTCAG-TTGGGGCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGA
326 CAACCCTCGG-TCAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
18301732 AACGGGCGTGCGGGCGCTTAGCCGGTAGGGGAGGCAGAATGCGCTAGCCGGGGTTCAACCCGGTC
390 AACGGGCGTGCGGGCGCTTAGCCGGTAGGGGAGGCAGAATGCGCTAGCCGGGGTTCAACCCGGTC
18301797 CCCCATGCGTGTTGTCAATCCTACTGCTGCAACCCTCGATCCGGTCT
455 CCCCATGCGTGTTGTCAATCCTACTGCTGCAACCCTCGATCCGGTCT
* * *
18301844 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGAAATGGAATTAACTCCGTATGCCTAAACCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAACCAA
* * * ** *
18301909 CCCATGAAACGAGCATACGGGCATTCAGCCAACCGGAGAGGCAAAATGCGTAAGCC-AGGGATCG
66 CCCATAAAACGAGCATACGGGCACTCAGCCAACCAGAGAGGCAAAATGCACAAGCCGAGGAAT-G
*** * * * * * *
18301973 ATTTGGTCCC-CCTTGCGTGCTATCGATCCTGCTATCGCAACCTTCCG-TAC-GATCAAATCTTA
130 ACCCGATCCCACCCTGCGTGCTATCGAACCTACTATCGCAACCCT-CGATACAGATC-AATCTAA
* *
18302035 GACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAATGTTCGGACGTTGAGCCGGC
193 GACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAACGTTCGGACGTTGAGCCGGC
* ** *
18302100 CAGAGAGGCATAACGCT-CAAGTCGA-GGATCAG-CCTGATCCCCCTCTGTGTTCTGTCGGT-CT
258 CAGAGAGGCATAACG-TGCAAG-CGAGGGATCAGCCCAG-TCCCCCTCTGCATGCTGT-GGTCCT
* *
18302161 CACTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
319 -ACTGCCACAACCCTCGGTCAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* *
18302226 CCCATGAAACGGGCGTGTGGGCG
383 CCCACGAAACGGGCGTGCGGGCG
18302249 TTCAGCTAGC
Statistics
Matches: 340, Mismatches: 56, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
499 6 0.02
500 140 0.41
501 194 0.57
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (501 bp):
GATCTTAGACTAGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAACCAA
CCCATAAAACGAGCATACGGGCACTCAGCCAACCAGAGAGGCAAAATGCACAAGCCGAGGAATGA
CCCGATCCCACCCTGCGTGCTATCGAACCTACTATCGCAACCCTCGATACAGATCAATCTAAGAC
AGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAACGTTCGGACGTTGAGCCGGCCAG
AGAGGCATAACGTGCAAGCGAGGGATCAGCCCAGTCCCCCTCTGCATGCTGTGGTCCTACTGCCA
CAACCCTCGGTCAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACGGGCGTGCGGGCGCTTAGCCGGTAGGGGAGGCAGAATGCGCTAGCCGGGGTTCAACCCGGTCC
CCCATGCGTGTTGTCAATCCTACTGCTGCAACCCTCGATCCGGTCT
Found at i:18302391 original size:26 final size:26
Alignment explanation
Indices: 18302347--18302399 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18302337 TTAGTCTGAT
18302347 CTTAGACTAGGAATAAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
* * * *
18302373 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
18302399 C
1 C
18302400 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:18302394 original size:500 final size:500
Alignment explanation
Indices: 18301343--18302436 Score: 1179
Period size: 500 Copynumber: 2.2 Consensus size: 500
18301333 GGTCCGATTC
*
18301343 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAA
* * ***** *
18301408 CCCATAAAACGAGCGTACGGGCACTCAGTTGGTCAGAGAGGCAGAATGCACAAGCCGAGGAATGA
65 CCCATGAAACGAGCATACGGGCACTCAGCCAACCAGAGAGGCAAAATGCACAAGCCGAGGAATGA
* * * * *
18301473 CCCGATCCCACCCTGCGTGCTGTCGAACCTACTATCGCAACCCTCGATCCAGTTCGATCTAAGAT
130 CCCGATCCCACCCTGCGTGCTATCGAACCTACTATCGCAACCCTCGATACAGATCAATCTAAGAC
* * * * * * **
18301538 TGGGAATGAACTCCGTATGCCTAAGTTAACCCATAAAACGAGCGTTTGGGCGTTGAGCTGGCTGG
195 AGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAACGTTCGGACGTTGAGCCGGCCAG
* * *
18301603 AGAGGCATAATGTGCAAGCTAGGGATCAGCCCAGTCCCCCTCTGCATGCTGTGGTCCTGCTGCCA
260 AGAGGCATAACGTGCAAGCGAGGGATCAGCCCAGTCCCCCTCTGCATGCTGTGGTCCTACTGCCA
* * *
18301668 CAACCCTCGGTTCAGTTGGGGCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAA
325 CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* ** ** * * * * *
18301733 ACGGGCGTGCGGGCGCTTAGCCGGTAGGGGAGGCAGAATGCGCTAGCCGGGGTTCAACCCGGTCC
390 ACGGGCGTGCGGGCGCTTAGCAGCCAGGAAAGGCAGAATGCACAAGCCAGGGATCAACCCGATCC
* * * * *
18301798 CCCATGCGTGTTGTCAATCCTACTGCTGCAACCCTCGATCCGGTCT
455 CCCATACATGCTGTCAATCCTACTGCTACAACCCTCGATCCAGTCT
* * * * *
18301844 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGAAATGGAATTAACTCCGTATGCCTAAACCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAG-ACTGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
18301909 CCCATGAAACGAGCATACGGGCATTCAGCCAACCGGAGAGGCAAAATGCGTAAGCC-AGGGATCG
65 CCCATGAAACGAGCATACGGGCACTCAGCCAACCAGAGAGGCAAAATGCACAAGCCGAGGAAT-G
*** * * * * * *
18301973 ATTTGGTCCC-CCTTGCGTGCTATCGATCCTGCTATCGCAACCTTCCG-TAC-GATCAAATCTTA
129 ACCCGATCCCACCCTGCGTGCTATCGAACCTACTATCGCAACCCT-CGATACAGATC-AATCTAA
* *
18302035 GACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAATGTTCGGACGTTGAGCCGGC
192 GACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAACGTTCGGACGTTGAGCCGGC
* ** *
18302100 CAGAGAGGCATAACGCT-CAAGTCGA-GGATCAG-CCTGATCCCCCTCTGTGTTCTGTCGGT-CT
257 CAGAGAGGCATAACG-TGCAAG-CGAGGGATCAGCCCAG-TCCCCCTCTGCATGCTGT-GGTCCT
*
18302161 CACTGCCACAACCCTTGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
318 -ACTGCCACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
18302225 ACCCATGAAACGGGCGTGTGGGCG-TTCAGCTAGCCA-GAAAGGTAGAATGCACAAGCTAGGGAT
381 ACCCACGAAACGGGCGTGCGGGCGCTT-AGC-AGCCAGGAAAGGCAGAATGCACAAGCCAGGGAT
*** * * * **
18302288 CAGTTCGATCCCCCCTACATGCTG-CGATCCTACTG-TCACAACCTTCGATTTAGTCT
444 CAACCCGATCCCCCATACATGCTGTCAATCCTACTGCT-ACAACCCTCGATCCAGTCT
* * * *
18302344 GATCTTAGACTAGGAATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* *
18302409 CCCATGAAACGAGCTTTCGGGCACTCAG
65 CCCATGAAACGAGCATACGGGCACTCAG
18302437 TCGGTTGAAG
Statistics
Matches: 486, Mismatches: 93, Indels: 29
0.80 0.15 0.05
Matches are distributed among these distances:
499 9 0.02
500 242 0.50
501 232 0.48
502 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (500 bp):
GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCATACGGGCACTCAGCCAACCAGAGAGGCAAAATGCACAAGCCGAGGAATGAC
CCGATCCCACCCTGCGTGCTATCGAACCTACTATCGCAACCCTCGATACAGATCAATCTAAGACA
GGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAACGTTCGGACGTTGAGCCGGCCAGA
GAGGCATAACGTGCAAGCGAGGGATCAGCCCAGTCCCCCTCTGCATGCTGTGGTCCTACTGCCAC
AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTGCGGGCGCTTAGCAGCCAGGAAAGGCAGAATGCACAAGCCAGGGATCAACCCGATCCC
CCATACATGCTGTCAATCCTACTGCTACAACCCTCGATCCAGTCT
Found at i:18303048 original size:26 final size:26
Alignment explanation
Indices: 18303019--18303071 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18303009 CCGGTCCAAT
*
18303019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18303045 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18303071 C
1 C
18303072 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18304076 original size:26 final size:26
Alignment explanation
Indices: 18304040--18304092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18304030 CTGGTTTGAT
18304040 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
18304066 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
18304092 C
1 C
18304093 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18304622 original size:159 final size:158
Alignment explanation
Indices: 18304260--18304762 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 158
18304250 AACTCCGTAT
* * *
18304260 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTATG-GGCGCTCA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC--ATGCGGCGCTCA
* * * *
18304324 GCCGATCGGAGAGGTAGAATGCACAAGCCGGGGACCGTCCTGATCCCCCCTGCATGCTGTCGATC
64 GCCGATCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCTGCATGCTATCGATC
** * *
18304389 CTGCAACCGCAACCCTCAGTCCGGTCTGAT
129 CCACAACCACAACCCTCAGTCCGGTCTGAG
* * * *
18304419 G-TTATA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCACTCA
1 GCTTAGACTT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGC-GGCGCTCA
* * * * * *
18304482 GCCGGTCGGAGAGGCATAATGCACAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGT
64 GCCGATCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCCCCC-CTGCATGCTATCGAT
* * *
18304547 CCCACTACCACAACCCTCAGTCTGG-CTGGG
128 CCCACAACCACAACCCTCAGTCCGGTCTGAG
* * * *
18304577 GCTTAGACTTGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGC-GGCGCTCAG
* * ** ** * * * * *
18304642 TCGATCGGAGAGGTAGAATGTGCAAGCCGGGGA-TAAGCCTGGTCCCCCTTGCGTGCTACCGATC
65 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGACCGA-CCCGATCCCCCCTGCATGCTATCGATC
* ** * * * *
18304706 CTACTGCCTCAACCCTCTGTCCGATCCGA-
129 CCACAACCACAACCCTCAGTCCGGTCTGAG
* * *
18304735 TCTTAGACTGGGAATGAACTCTGTATGC
1 GCTTAGACTTGGAATGAACTCCGTATGC
18304763 TTAGATTGGG
Statistics
Matches: 277, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 1 0.00
158 150 0.54
159 121 0.44
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGCGCTCAGC
CGATCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCTGCATGCTATCGATCCC
ACAACCACAACCCTCAGTCCGGTCTGAG
Found at i:18304780 original size:26 final size:26
Alignment explanation
Indices: 18304736--18304788 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18304726 CCGATCCGAT
*
18304736 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
* *
18304762 CTTAGATTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
18304788 C
1 C
18304789 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:18306357 original size:159 final size:159
Alignment explanation
Indices: 18305976--18306438 Score: 490
Period size: 158 Copynumber: 2.9 Consensus size: 159
18305966 AACTCCGTAT
* * * *
18305976 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGCGCTCAG
* * * * * * * *
18306041 CTGATCGAAAAGGCAGAATGCACAAGCCGGGGACCGACTTGATCCCCC-CTGCATGCTGTCGATC
65 CCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGATC
* * *
18306105 CTGCTACTACAACCGTCAGTCTGGTCTGAT
130 CTGCTACCACAACCCTCAGTCTGGTCTGAG
* * * * *
18306135 G-TTATA-TTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTCA
1 GCTTAGACTT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGCGCTCA
** * *
18306198 GCCGGCCGGAGAGGCATAATGCACAAGCTGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGT
64 GCCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGAT
* *
18306263 CCCGCTACCACAACCCTCAGTCTGG-CTGGG
129 CCTGCTACCACAACCCTCAGTCTGGTCTGAG
* * *
18306293 GCTTAGACTTGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGACGCTCAG
1 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGG-CGCTCAG
* ** * * *
18306358 TCGATCGGAGAGGCAGAATGTGCAAG-TCGGGGATAGGC-CTGGTCCCCCT-TGCGTGCTATCGA
65 CCGATCGGAGAGGCAGAATGCACAAGCT-GGGGATCGGCTC-GATCCCCCTCTGCGTGCTGTCGA
* *
18306420 TCCTACTACCGCAACCCTC
128 TCCTGCTACCACAACCCTC
18306439 TGTCCGATTC
Statistics
Matches: 250, Mismatches: 47, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 125 0.50
159 122 0.49
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGCTCAGC
CGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCAGTCTGGTCTGAG
Done.