Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 163 of 402
Found at i:18306488 original size:26 final size:26
Alignment explanation
Indices: 18306452--18306504 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18306442 CCGATTCGAT
18306452 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
18306478 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18306504 C
1 C
18306505 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18307214 original size:26 final size:26
Alignment explanation
Indices: 18307172--18307224 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18307162 CGCTCAAACT
*
18307172 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18307198 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18307224 C
1 C
18307225 CTAAGCTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18307550 original size:26 final size:26
Alignment explanation
Indices: 18307514--18307566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18307504 CTGATTCAAT
*
18307514 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18307540 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18307566 C
1 C
18307567 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18307762 original size:26 final size:26
Alignment explanation
Indices: 18307724--18307776 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18307714 CTGATCTGAT
18307724 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18307750 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18307776 C
1 C
18307777 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18308240 original size:26 final size:26
Alignment explanation
Indices: 18308204--18308256 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18308194 CTGGTTTGAT
*
18308204 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
18308230 CTTAGATTGGGGATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18308256 C
1 C
18308257 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18308582 original size:26 final size:26
Alignment explanation
Indices: 18308546--18308598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18308536 TCGGTTTGAT
*
18308546 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18308572 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18308598 C
1 C
18308599 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18308652 original size:342 final size:339
Alignment explanation
Indices: 18308012--18309038 Score: 1269
Period size: 342 Copynumber: 3.0 Consensus size: 339
18308002 GGGATTAGCC
* * * *
18308012 CGGTCCCGCTACCACAACCCTC-AGTCCGGTTAGGGCTTAGACATGGAATGAACTCCCTATGCCT
1 CGGTCCCACTGCCACAACCCTCGA-TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * * * * * *
18308076 AAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCAACCGAAGAAGTAGAATGCATAAGTCGG
65 AAGCCAACCCACGAAATGGGCGTGC-GGCGCTCAGACGACCGGAGAGGTAGAATGCGTAAGCCGG
* * * **
18308141 GGATCGGCCTGGCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGGTCTGGTTTGATCT
129 GGATCGGCC-GGTCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCATTC-GGTTTGATCT
* * *
18308206 TAGACTGGGAATGAACTTCGTATGCTTAGATTGGGGATGCACTCCGTATGCCTAAGTCAACCCAT
192 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT
* * * * *
18308271 GAAATGAACGTGCGAGTGCTCAA-TCAGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCG
257 GAAATGAGCGTGTGGGTGCTCAACT-AATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG
* *
18308335 ATCCCCCTCTGCTTGCTGT
321 ATCCCCCTCTACGTGCTGT
*
18308354 CGGTCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATTAACTCCCTATGCCTA
1 CGGTCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * *
18308419 AGCCAACCCACGAAATGGGCGTGCAGGCGATCAGTCGATCGGAGAGGTAGAATGCGTAAGCCGGG
66 AGCCAACCCACGAAATGGGCGTGC-GGCGCTCAGACGACCGGAGAGGTAGAATGCGTAAGCCGGG
* *
18308484 GATCGACTCGGTCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAATTCGGTTTGATCTT
130 GATCGGC-CGGTCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTC-ATTCGGTTTGATCTT
* * *
18308549 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACGCACG
193 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
* * *
18308614 AAATGAGCGTGTGGGCGCTCAACTAATCGGAA-AGGCAGAATGCACAAG-CGGGGATCGACCC-A
258 AAATGAGCGTGTGGGTGCTCAACTAATC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA
18308676 GTCCCCCTCTACGTGCTGT
322 -TCCCCCTCTACGTGCTGT
* *
18308695 CGGTCCTACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
** * * * * **
18308760 AGCCAACCCACGAAATAAGCGTGCGAGCGCTCAAACTG-CCAGAGAGGCAGAATACGCCAGCCGG
66 AGCCAACCCACGAAATGGGCGTGCG-GCGCTCAGAC-GACCGGAGAGGTAGAATGCGTAAGCCGG
* * * * *
18308824 GGATCGGCCCGATCCCCCCTACGTGCTGCCTATCCTGCTGCCGCAA-CCTCGATCCGATTTGATC
129 GGATCGG-CCGGT-CCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTC-ATTCGGTTTGATC
*
18308888 TTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCCA
191 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * ** * * *
18308953 TAAAATGAGCGTGTGGGTGCTCAGCCGATCGAAGAGGTAGAATGTGCAAGCTGGGGATCGGCCCG
256 TGAAATGAGCGTGTGGGTGCTCAACTAATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG
* *
18309018 AT-GCCCTCCTATGTGCTGT
321 ATCCCCCT-CTACGTGCTGT
18309037 CG
1 CG
18309039 ATCTTGCTAT
Statistics
Matches: 593, Mismatches: 78, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
340 5 0.01
341 265 0.45
342 314 0.53
343 9 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (339 bp):
CGGTCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAATGGGCGTGCGGCGCTCAGACGACCGGAGAGGTAGAATGCGTAAGCCGGGG
ATCGGCCGGTCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCATTCGGTTTGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
TGAGCGTGTGGGTGCTCAACTAATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC
CCTCTACGTGCTGT
Found at i:18308736 original size:184 final size:183
Alignment explanation
Indices: 18308404--18308756 Score: 426
Period size: 183 Copynumber: 1.9 Consensus size: 183
18308394 ACATGGAATT
* * * * * *
18308404 AACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGATCAGTCGATCGGAGAGGTAG
1 AACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGATCACTCAATCGGAAAGGCAG
** * * *
18308469 AATGCGTAAGCCGGGGATCGACTCGGTCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCA
66 AATGCACAAGCCGGGGATCGACCCAGTCCCCCTACGTGCTGTCGATCCTACTGCCACAACCCTCA
* * * *
18308534 ATTCGGTTTGATCTTAGAC-TGGGAATGAACTCCGTATGCTTAGACTGGGGATG
131 ATTCGGCTGGAGCTTAGACAT-GGAATGAACTCCCTATGCTTAGACTGGGGATG
* * ** *
18308587 AACTCCATATGCCTAAGTCAACGCACGAAATGAGCGTGTGGGCGCTCAACT-AATCGGAAAGGCA
1 AACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGATC-ACTCAATCGGAAAGGCA
*
18308651 GAATGCACAAG-CGGGGATCGACCCAGTCCCCCTCTACGTGCTGTCGGTCCTACTGCCACAACCC
65 GAATGCACAAGCCGGGGATCGACCCAGT-CCCC-CTACGTGCTGTCGATCCTACTGCCACAACCC
* *
18308715 TCGA-TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
128 TCAATTC-GGCTGGAGCTTAGACATGGAATGAACTCCCTATGC
18308757 CTAAGCCAAC
Statistics
Matches: 142, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
182 14 0.10
183 65 0.46
184 62 0.44
185 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (183 bp):
AACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGATCACTCAATCGGAAAGGCAG
AATGCACAAGCCGGGGATCGACCCAGTCCCCCTACGTGCTGTCGATCCTACTGCCACAACCCTCA
ATTCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCTTAGACTGGGGATG
Found at i:18308846 original size:158 final size:157
Alignment explanation
Indices: 18308571--18308913 Score: 370
Period size: 158 Copynumber: 2.2 Consensus size: 157
18308561 AACTCCGTAT
* * * * * *
18308571 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACGCACGAAATGAGCGTGTGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGCGTGCGAGCGCTCAA
* * * * *
18308636 CTAATCGGAAAGGCAGAATGCACAAGCGGGGATCGACCCAGTCCCCCTCTACGTGCTGTCGGTCC
66 CTAACCAGAAAGGCAGAATACACAAGCGGGGATCGACCCAGTCCCCCTCTACGTGCTGCCGATCC
18308701 TACTGCCACAACCCTCGATCTGGCTGGG
131 TACTGCCACAA-CCTCGATCTGGCTGGG
*
18308729 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAAGCGTGCGAGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGCGTGCGAGCGCTC-
* * * * * *
18308793 AACT-GCCAGAGAGGCAGAATACGCCAGCCGGGGATCGGCCC-GATCCCCC-CTACGTGCTGCCT
64 AACTAACCAGAAAGGCAGAATACACAAG-CGGGGATCGACCCAG-TCCCCCTCTACGTGCTGCCG
* * * ** * *
18308855 ATCCTGCTGCCGCAACCTCGATCCGATTTGA
127 ATCCTACTGCCACAACCTCGATCTGGCTGGG
* *
18308886 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCATATGC
18308914 TTAGACCGGG
Statistics
Matches: 153, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
156 1 0.01
157 35 0.23
158 94 0.61
159 23 0.15
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGCGTGCGAGCGCTCAA
CTAACCAGAAAGGCAGAATACACAAGCGGGGATCGACCCAGTCCCCCTCTACGTGCTGCCGATCC
TACTGCCACAACCTCGATCTGGCTGGG
Found at i:18308916 original size:26 final size:26
Alignment explanation
Indices: 18308887--18308939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18308877 CCGATTTGAT
*
18308887 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
18308913 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
18308939 C
1 C
18308940 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:18309124 original size:26 final size:26
Alignment explanation
Indices: 18309087--18309136 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18309077 GTTTGATCTG
*
18309087 AGACTGGAAATGAACTTCGTATGCTT
1 AGACTGGAAATGAACTCCGTATGCTT
18309113 AGACATGG-AATGAACTCCGTATGC
1 AGAC-TGGAAATGAACTCCGTATGC
18309137 CTAATCCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
AGACTGGAAATGAACTCCGTATGCTT
Found at i:18309666 original size:26 final size:26
Alignment explanation
Indices: 18309637--18309689 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18309627 CCGGTCTGAT
*
18309637 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATCAACTCCGTATG
*
18309663 CTTAGACATGGAATCAACTCTGTATG
1 CTTAGACATGGAATCAACTCCGTATG
18309689 C
1 C
18309690 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATCAACTCCGTATG
Found at i:18309698 original size:185 final size:185
Alignment explanation
Indices: 18309477--18309845 Score: 478
Period size: 185 Copynumber: 2.0 Consensus size: 185
18309467 TCCAGCTGGG
* * *
18309477 GCTTAGACATTGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATCAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* * * * *
18309542 TC-GATCGGAGAGACAGAATGCGCAAGTCGGGGATC-AACCTGGTCCCCCCTTATGTG-T-TGCT
66 CCAG-TCGGAGAGACAGAATGCGCAAGTCAGGGATCGAACC-AGTCCCCCCCTACGTGCTAT-C-
* * * * *
18309603 GATCCTGCTGTCGCTACCTTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
127 GATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
* * **
18309662 GCTTAGACATGGAATCAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTTTCA
1 GCTTAGACATGGAATCAACTTC-GTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
* * *
18309726 GCCAGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCGATCCAGTCCCCCCCTACGTGCTATCGAT
65 GCCAGTCGGAGAGACAGAATGCGCAAGTCAGGGATCGAACCAGTCCCCCCCTACGTGCTATCGAT
18309791 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTA
130 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTA
18309846 CGCCTAAGTC
Statistics
Matches: 159, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
184 2 0.01
185 150 0.94
186 6 0.04
187 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (185 bp):
GCTTAGACATGGAATCAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
CCAGTCGGAGAGACAGAATGCGCAAGTCAGGGATCGAACCAGTCCCCCCCTACGTGCTATCGATC
CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:18309920 original size:159 final size:159
Alignment explanation
Indices: 18309663--18310482 Score: 646
Period size: 159 Copynumber: 5.2 Consensus size: 159
18309653 ACTCCGTATG
* * * * **
18309663 CTTAGACATGGAATCAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* ** * * * *
18309728 C-AGTCGGAGAGGCAGAATGCGTAAGTC-AGGGATCGATCCAGTCCCCCCCTACGTGCTATCGAT
66 CGA-CCGGAGAGGCAGAATGCACAAGTCGA-GGATCGAGCCGGTCCCCCCCTGCGTGCTGTCGAT
*
18309791 CCTGCTGCCGCAACCCTCGGTCCGGTCTGAT
129 CCTGCTGCCGCAACCCTCGGTCCAGTCTGAT
* * ** *
18309822 CTTAGAC-TAGGAATGAACTCCGTACGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * ** * *
18309886 CCGATCAGAGAGGCATAATGCACAAGTCGAGGATC-AGCTCGGTCCCCCTCTATGTGCTGCCGGT
65 CCGACCGGAGAGGCAGAATGCACAAGTCGAGGATCGAGC-CGGTCCCCCCCTGCGTGCTGTCGAT
* * * * **
18309950 CCCGCTGCCACAACCATCGGT-CAGACTGGGG
129 CCTGCTGCCGCAACCCTCGGTCCAGTCT-GAT
* * * * * *
18309981 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAATGGGAGTACGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * *
18310046 C-AGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCG-GTCTGGT-CCCCCCTGCATGTTGTCAAT
66 CGA-CCGGAGAGGCAGAATGCACAAGTCGAGGATCGAG-CCGGTCCCCCCCTGCGTGCTGTCGAT
* * * *
18310108 CCTGCTGTCGCAACCCTTGGTCCGGTCCGAT
129 CCTGCTGCCGCAACCCTCGGTCCAGTCTGAT
* * * * * *
18310139 CTTAGAC-TGGAAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCACTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
18310203 CAGGCCGGAGAGGCATAATGCACAAGTCGGGGACCG-GCCCGATCCCCCTCTGCATGCTGTCGAT
65 CCGACCGGAGAGGCAGAATGCACAAGTCGAGGATCGAG-CCGGTCCCCCCCTGCGTGCTGTCGAT
* ** * **
18310267 CCCGCTGCCATAACCCTCGGTCCA-ACTGGGG
129 CCTGCTGCCGCAACCCTCGGTCCAGTCT-GAT
* * * * *
18310298 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAATGGGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
18310363 CGGCCGGAGAGGCAGAATGCCCAAG-CCAGGGATCGA-CCTGGT-CCCCCCTGCGTGCTG-CTGA
66 CGACCGGAGAGGCAGAATGCACAAGTCGA-GGATCGAGCC-GGTCCCCCCCTGCGTGCTGTC-GA
* * *
18310424 TCCTACTGCCGCCACCCTCGGTCCAGTCTAAT
128 TCCTGCTGCCGCAACCCTCGGTCCAGTCTGAT
* * *
18310456 CTTGGAC-TGGGAATGAAGTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
18310483 TTAGACTGGG
Statistics
Matches: 513, Mismatches: 127, Indels: 43
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.01
158 179 0.35
159 322 0.63
160 7 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCACAAGTCGAGGATCGAGCCGGTCCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCCAGTCTGAT
Found at i:18310251 original size:317 final size:317
Alignment explanation
Indices: 18309662--18310472 Score: 980
Period size: 317 Copynumber: 2.6 Consensus size: 317
18309652 AACTCCGTAT
* ** * * * * **
18309662 GCTTAGACATGGAATCAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGAGTGCGGGCGCTCAG
* * ** * * *
18309727 CCAGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCGATCCAGTCCCCCCCTACGTGCTATCGATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGATCTGGT-CCCCCCTGCATGCTATCAATC
*
18309792 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCA
* * * * *
18309857 ACCCATAAAATGAGCGTGCGGGCGCTGAGCCGATCAGAGAGGCATAATGCACAAGTCGAGGATCA
195 ACCCACAAAATGAGCGTGCGGGCACTGAGCAGACCAGAGAGGCATAATGCACAAGTCGAGGACCA
* * ** *
18309922 GCTCGGTCCCCCTCTATGTGCTGCCGGTCCCGCTGCCACAACCATCGGT-CAGACTGGG
260 GCCCGATCCCCCTCTACATGCTGCCGATCCCGCTGCCACAACCATCGGTCCA-ACTGGG
* * *
18309980 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAATGGGAGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGAGTGCGGGCGCTCAG
* * * * *
18310045 CCAGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGTCTGGTCCCCCCTGCATGTTGTCAATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGATCTGGTCCCCCCTGCATGCTATCAATCC
* * * *
18310110 TGCTGTCGCAACCCTTGGTCCGGTCCGATCTTAGACT-GGAAATGAACTTCGTATGCCTAAGTCA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGG-AATGAACTCCGTACGCCTAAGTCA
* * * * *
18310174 ACCCACAAAATGAGCGTGTGGGCACTGAGCAGGCCGGAGAGGCATAATGCACAAGTCGGGGACCG
195 ACCCACAAAATGAGCGTGCGGGCACTGAGCAGACCAGAGAGGCATAATGCACAAGTCGAGGACCA
* * * *
18310239 GCCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCATAACCCTCGGTCCAACTGGG
260 GCCCGATCCCCCTCTACATGCTGCCGATCCCGCTGCCACAACCATCGGTCCAACTGGG
* * *
18310297 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAATGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGAGTGCGGGCGCTCAG
* * * * * * *
18310362 CCGGCCGGAGAGGCAGAATGCCCAAGCCAGGGATCGACCTGGTCCCCCCTGCGTGCT-GCTGATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGATCTGGTCCCCCCTGCATGCTATC-AATC
* * * ** * *
18310426 CTACTGCCGCCACCCTCGGTCCAGTCTAATCTTGGACTGGGAATGAA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAA
18310473 GTCCATATGC
Statistics
Matches: 416, Mismatches: 73, Indels: 9
0.84 0.15 0.02
Matches are distributed among these distances:
316 3 0.01
317 320 0.77
318 93 0.22
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGAGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGATCTGGTCCCCCCTGCATGCTATCAATCC
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAA
CCCACAAAATGAGCGTGCGGGCACTGAGCAGACCAGAGAGGCATAATGCACAAGTCGAGGACCAG
CCCGATCCCCCTCTACATGCTGCCGATCCCGCTGCCACAACCATCGGTCCAACTGGG
Found at i:18311503 original size:159 final size:159
Alignment explanation
Indices: 18311214--18311753 Score: 387
Period size: 159 Copynumber: 3.3 Consensus size: 159
18311204 CTTAGACATG
* *
18311214 GAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGA
* * * * ** *
18311279 GGCAGACTGGGCAAGCCAGGGATCGACCTGGTCCCCCCCTACGTGATGTTGATCCTGCTGTCACA
66 GGCAGACTGCGCAAGCCAGGGATCGACCCGATCCCCCCCTACGTGATGTCGATCCCACTGCCACA
18311344 ACCATCAGTCCGGTCTGATCTTAGACTCA
131 ACCATCAGTCCGGTCTGATCTTAGACTCA
* * **
18311373 GAATGAACTCCGTATGCATAA-CTCAACCCATGAAACGAGCGTGTGGGCGCT-AAGCCGGTC-GA
1 GAATGAACTCCGTATGCATAAGC-CAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCGACCAG-
* * * ** * * * *
18311435 AGGGGCATATTGCGCAAGTTAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTGCC
63 AGAGGCAGACTGCGCAAGCCAGGGATCGACCCGATCCCCCCCTACGTGATGTCGATCCCACTGCC
* * * ** *
18311500 ACAACCCTCGGTCCAG-CTGGGGCTTAGACAT-G
128 ACAACCATCAGTCCGGTCT-GATCTTAGAC-TCA
* * * * ** **
18311532 GAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTACTCAACCGGTCAGAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGA
* * * * *
18311597 GGCAGAACT-CTGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT-CCCCCCTGCGTGCTGCCGAT
66 GGCAG-ACTGC--GC--AA-GC-C-A----GGGATCGACCCGATCCCCCCCTACGTGATGTCGAT
* * * ** *
18311660 CCCACTGCCACAACCCTCGGTCTGG-CTGGGGCTTAGACAT-G
119 CCCACTGCCACAACCATCAGTCCGGTCT-GATCTTAGAC-TCA
* * * *
18311701 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCA
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
18311754 GCCGGATGGA
Statistics
Matches: 308, Mismatches: 53, Indels: 30
0.79 0.14 0.08
Matches are distributed among these distances:
158 6 0.02
159 173 0.56
160 7 0.02
161 2 0.01
163 2 0.01
164 1 0.00
166 1 0.00
169 104 0.34
170 12 0.04
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGA
GGCAGACTGCGCAAGCCAGGGATCGACCCGATCCCCCCCTACGTGATGTCGATCCCACTGCCACA
ACCATCAGTCCGGTCTGATCTTAGACTCA
Found at i:18311768 original size:169 final size:170
Alignment explanation
Indices: 18311445--18311772 Score: 498
Period size: 169 Copynumber: 1.9 Consensus size: 170
18311435 AGGGGCATAT
* * *
18311445 TGCGCAAGTTAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCG
1 TGCGCAAGCTAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGCCACAACCCTCG
* * *
18311510 GTCCAGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTA
66 GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATA
18311575 CGGGTACTCAACCGGTCAGAGAGGCAGAACTCTGGCAGAA
131 CGGGTACTCAACCGGTCAGAGAGGCAGAACTCTGGCAGAA
* * *
18311615 TGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATCCCACTGCCACAACCCTCG
1 TGCGCAAGCTAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGCCACAACCCTCG
** *
18311679 GTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATG
66 GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATA
* * *
18311744 CGGGTGCTCAGCCGGAT-GGAGAGGCAGAA
131 CGGGTACTCAACCGG-TCAGAGAGGCAGAA
18311773 TGCGTGAGTT
Statistics
Matches: 142, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
169 115 0.81
170 27 0.19
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (170 bp):
TGCGCAAGCTAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGCCACAACCCTCG
GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATA
CGGGTACTCAACCGGTCAGAGAGGCAGAACTCTGGCAGAA
Found at i:18312486 original size:158 final size:159
Alignment explanation
Indices: 18312239--18312536 Score: 409
Period size: 158 Copynumber: 1.9 Consensus size: 159
18312229 GCTTTAACAT
* *
18312239 GGAAAGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCACTCAGTCGGCCAGAG
1 GGAAAGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGTGTACGGGCACTCAGTCGGCCAGAG
* * * ** *
18312304 AGGCAGAATGCGTAAGCCGAGGATCGGCTCAGTCCCCC-CCGCATGCTGTCGATCCTGCTGCTAC
66 AGGCAGAATGCGTAAGCCGAGGATCGGCCCAGTCCCCCTCCGCAGGCTGCCGATCCCACTGCCAC
18312368 AACCCTCGGTCTGATCTTATCTTAGATTG
131 AACCCTCGGTCTGATCTTATCTTAGATTG
* * * ** * *
18312397 GGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGTGCTGAGTCGGCCGGAG
1 GGAAAGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGTGTACGGGCACTCAGTCGGCCAGAG
* * * * *
18312462 AGGCATAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGGGCTGCCGATCCCACTGCCAC
66 AGGCAGAATGCGTAAGCCGAGGATCGGCCCAGTCCCCCTCCGCAGGCTGCCGATCCCACTGCCAC
18312527 AACCCTCGGT
131 AACCCTCGGT
18312537 TTGGCTGGGG
Statistics
Matches: 119, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
158 90 0.76
159 29 0.24
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GGAAAGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGTGTACGGGCACTCAGTCGGCCAGAG
AGGCAGAATGCGTAAGCCGAGGATCGGCCCAGTCCCCCTCCGCAGGCTGCCGATCCCACTGCCAC
AACCCTCGGTCTGATCTTATCTTAGATTG
Found at i:18312741 original size:26 final size:26
Alignment explanation
Indices: 18312705--18312755 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18312695 CCAGTCCGAT
* *
18312705 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18312731 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
18312756 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18319372 original size:26 final size:26
Alignment explanation
Indices: 18319329--18319381 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18319319 GGCTCAAAAT
*
18319329 CTTAGACTGGGGAATGAATTCCGTATG
1 CTTAGACTGGGGAATGAACT-CGTATG
*
18319356 CTTAGACT-TGGAATGAACTCGTATG
1 CTTAGACTGGGGAATGAACTCGTATG
18319381 C
1 C
18319382 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 9 0.38
27 8 0.33
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGAATGAACTCGTATG
Found at i:18321593 original size:26 final size:26
Alignment explanation
Indices: 18321541--18321593 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18321531 GGCTCAAAAT
* *
18321541 CTTAGACTGGAAATGAGCTCCATATG
1 CTTAGACTGGAAATGAACTCCACATG
*
18321567 CTTAGACATGG-AATGAACTCCGCATG
1 CTTAGAC-TGGAAATGAACTCCACATG
18321593 C
1 C
18321594 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCACATG
Found at i:18321863 original size:159 final size:159
Alignment explanation
Indices: 18321567--18322310 Score: 558
Period size: 159 Copynumber: 4.6 Consensus size: 159
18321557 GCTCCATATG
* * *
18321567 CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCGA-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCT-GAG
* * * * * *
18321631 CCGG-TCGAAGAGGCAGAACGCACTAGTAGGGGA-TCGACTCGATCCCCCCCTGCGTGCTATCGA
65 CCGGCT-GAAGAGGCAGAATGCACAAGTCGGGGATTAG-CCCGATCCCCCCCTGCGTGCTGTCGA
* *
18321694 TCCTGTTGCCACAACCCTCAGTCCGGTCTGAT
128 TCCTGCTGCCACAACCCTCAGTCCAGTCTGAT
* * *
18321726 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTGAG
* * * * * ** * *
18321790 TCGGCTGAAGAGGCACAATGCGCAAGTCGGGGATTAGGCCGGTCCCCTTCTACGTACTGTC-AGT
65 CCGGCTGAAGAGGCAGAATGCACAAGTCGGGGATTAGCCCGATCCCCCCCTGCGTGCTGTCGA-T
* * **
18321854 CCCGCTGCCACAACCCTCAGTTCAG-CTGGGG
129 CCTGCTGCCACAACCCTCAGTCCAGTCT-GAT
* * * *
18321885 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACG-GCATGCGGGCACTAAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTGAGC
** * * * *
18321949 CAAC-CAGAGAGGCAGAATGCATAAGCCGGGGATTAGCCCGAT-CCCCCCTGCGTGCTGCCGATC
66 CGGCTGA-AGAGGCAGAATGCACAAGTCGGGGATTAGCCCGATCCCCCCCTGCGTGCTGTCGATC
* * * * * * *
18322012 CTACTGTCGCAAACCTCGGCCCAGTCCGAT
130 CTGCTGCCACAACCCTCAGTCCAGTCTGAT
* * * ** * * * *
18322042 CTTAGAC-TGGGGATGAAATCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTGAG
* * * * * *
18322106 CCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATC
65 CCGGCTGAAGAGGCAGAATGCACAAGTCGGGGATTAGCCCGATCCCCC-C--C-TGC-GT-G---
* * * **
18322171 CCACTGTCGGTCCTGCTGCCACAACCCTCAGT-CTGGCTGGGG
121 ---CTGTCGATCCTGCTGCCACAACCCTCAGTCCAGTCT-GAT
* * * *
18322213 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTGAGC
* * **
18322278 C-GATCGGAGAGGCAGAATGCGTAAGTCGGGGAT
66 CGGCT-GAAGAGGCAGAATGCACAAGTCGGGGAT
18322311 CGGCCTGGTC
Statistics
Matches: 452, Mismatches: 104, Indels: 46
0.75 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 69 0.15
158 96 0.21
159 164 0.36
160 5 0.01
162 1 0.00
163 3 0.01
164 2 0.00
165 1 0.00
170 4 0.01
171 105 0.23
172 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTGAGC
CGGCTGAAGAGGCAGAATGCACAAGTCGGGGATTAGCCCGATCCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCCAGTCTGAT
Found at i:18322150 original size:316 final size:322
Alignment explanation
Indices: 18321566--18322349 Score: 854
Period size: 316 Copynumber: 2.4 Consensus size: 322
18321556 AGCTCCATAT
* *
18321566 GCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCG
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAG
* * * * * *
18321630 ACCGGTCGAAGAGGCAGAACGCACT-AGTAGGGGA-TCGACTCGATCCCCCCCTGCGTGCTATCG
65 -CCGATCG-AGAGGCAGAATGCA-TAAGTCGGGGATTAG-CCCGAT-CCCCCCTGCGTGCTACCG
** * * * * * * *
18321693 ATCCTGTTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAG
125 ATCCTACTGTCGCAAACCTCAGCCCAGTCCGATCTTAGACTGGGAATGAAATCCGTATGCATAAG
** * * ** *
18321758 TCAACCCATGAAACGAGCATGCGGGTGCTGAGTCGGCTGAAGAGGCACAATGCGCAAGTCGGGGA
190 TCAACCCACAAAACGAGCATGCGGGCGCTCAACCGGCCGAAGAGGCACAATGCGCAAGTCGGGGA
* *
18321823 TTAGGCCGGT-CCC-CT-T-CT-ACG-T-ACTGTCAGTCCCGCTGCCACAACCCTCAGT-TCAGC
255 TCAGCCCGGTCCCCTCTGTGCTGACGATCACTGTCAGTCCCGCTGCCACAACCCTCAGTCT-AGC
18321880 TGGG
319 TGGG
* * *
18321884 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACG-GCATGCGGGCACTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-AG
* * * *
18321948 CCAACCAGAGAGGCAGAATGCATAAGCCGGGGATTAGCCCGATCCCCCCTGCGTGCTGCCGATCC
65 CCGATC-GAGAGGCAGAATGCATAAGTCGGGGATTAGCCCGATCCCCCCTGCGTGCTACCGATCC
* * *
18322013 TACTGTCGCAAACCTCGGCCCAGTCCGATCTTAGACTGGGGATGAAATCCGTATGCCTAAGTCAA
129 TACTGTCGCAAACCTCAGCCCAGTCCGATCTTAGACTGGGAATGAAATCCGTATGCATAAGTCAA
* * * *
18322078 CCCACAAAATGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAG
194 CCCACAAAACGAGCATGCGGGCGCTCAACCGGCCGAAGAGGCACAATGCGCAAGTCGGGGATCAG
* * * *
18322143 CCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGTCGGTCCTGCTGCCACAACCCTCAGTCTGGC
259 CCCGGT-CCCCTCT--GTGCTGACGAT--CACTGTCAGTCCCGCTGCCACAACCCTCAGTCTAGC
18322208 TGGG
319 TGGG
** *
18322212 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-AG
* ** * * * *
18322277 CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGTTACCGATCC
65 CCGATC-GAGAGGCAGAATGCATAAGTCGGGGATTAGCCCGATCCCCCCTGCGTGCTACCGATCC
18322342 TACTGTCG
129 TACTGTCG
18322350 ATCCTGCTGC
Statistics
Matches: 384, Mismatches: 63, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
316 132 0.34
317 39 0.10
318 52 0.14
319 2 0.01
322 1 0.00
323 2 0.01
324 2 0.01
325 1 0.00
328 78 0.20
329 75 0.20
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (322 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAGC
CGATCGAGAGGCAGAATGCATAAGTCGGGGATTAGCCCGATCCCCCCTGCGTGCTACCGATCCTA
CTGTCGCAAACCTCAGCCCAGTCCGATCTTAGACTGGGAATGAAATCCGTATGCATAAGTCAACC
CACAAAACGAGCATGCGGGCGCTCAACCGGCCGAAGAGGCACAATGCGCAAGTCGGGGATCAGCC
CGGTCCCCTCTGTGCTGACGATCACTGTCAGTCCCGCTGCCACAACCCTCAGTCTAGCTGGG
Found at i:18322411 original size:25 final size:26
Alignment explanation
Indices: 18322383--18322434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18322373 GCGGTCCGGT
18322383 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
18322408 CTTAGACATGGAATGAACTCCTTATG
1 CTTAGACATGGAATGAACTCCGTATG
18322434 C
1 C
18322435 CTAAGCGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18322926 original size:26 final size:26
Alignment explanation
Indices: 18322886--18322936 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18322876 CGGCCCGATC
* *
18322886 TTAGATTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAATGAACTACGTATGG
*
18322912 TTAGACTGGGGATGAACTACGTATG
1 TTAGACTGGGAATGAACTACGTATG
18322937 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.10, G:0.31, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACGTATGG
Found at i:18323632 original size:26 final size:26
Alignment explanation
Indices: 18323590--18323642 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18323580 GGCTTAAAAT
*
18323590 CTTAGACTGGGATTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18323616 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18323642 C
1 C
18323643 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18324213 original size:318 final size:318
Alignment explanation
Indices: 18323615--18324214 Score: 692
Period size: 318 Copynumber: 1.9 Consensus size: 318
18323605 AACTCCATAT
* * * * *
18323615 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTATAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGAGCGTACAGGCGCTCAA
** * * *
18323680 CCGGCCAGAGAGGCAGAATGTGTAAGCTGGGGATCAGCCCGGTCCCTCCCTGCATGCTGTCGATC
66 CAAGCCAGAGAGGCAGAATGCGTAAGCTAGGGATCAGCCCGATCCCTCCCTGCATGCTGTCGATC
* * * * * *
18323745 CTGCTGCCACAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
131 CAGCTGCCACAACCCTCGATCCAGCTCGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCA
* * * * * * * *
18323810 ACCCACGAAACGAGCGTGCGGGCGCTGAGCAGGCTGAAAAGGCATAATGCGCAAGCCGGGGATCG
196 ACCCACAAAACGAGCGTACGGGCGCTAACCAGCCAGAAAAGGCAGAATGCGCAAGCCGAGGATCG
*
18323875 ACCCGGTCCCCCTATGCGTGCTACAGGTCCCGCTGCCCCAACCCTTAGTCCGGCTGGG
261 ACCCGATCCCCCTATGCGTGCTACAGGTCCCGCTGCCCCAACCCTTAGTCCGGCTGGG
* * * * * *
18323933 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGGGCGTGCGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGAGCGTACAGGCGCTCAA
* * *
18323998 CAAGCC-GAAGAGGCATAATGCGTAAGCTAGGGATCGGCCCGATCCC-CCTCTGCGTGCTG-CTG
66 CAAGCCAG-AGAGGCAGAATGCGTAAGCTAGGGATCAGCCCGATCCCTCC-CTGCATGCTGTC-G
* * ** * * *
18324060 GTCCAGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
128 ATCCAGCTGCCACAACCCTCGATCCAGCTCGAGCTTAGAC-TGGGAATGAACTCCCTATGCATAA
* *
18324124 GCCCAACCCACAAAACTG-GCGTACGGGCGCTCAACCAGCCAG-AGAGGCAGAATGTGCAAGCCG
192 G-CCAACCCACAAAAC-GAGCGTACGGGCGCT-AACCAGCCAGAAAAGGCAGAATGCGCAAGCCG
*
18324187 AGGATCGACCCGATCCCCC-CTGCGTGCT
254 AGGATCGACCCGATCCCCCTATGCGTGCT
18324215 GCCGATCCTG
Statistics
Matches: 231, Mismatches: 44, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
317 4 0.02
318 160 0.69
319 60 0.26
320 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGAGCGTACAGGCGCTCAA
CAAGCCAGAGAGGCAGAATGCGTAAGCTAGGGATCAGCCCGATCCCTCCCTGCATGCTGTCGATC
CAGCTGCCACAACCCTCGATCCAGCTCGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCA
ACCCACAAAACGAGCGTACGGGCGCTAACCAGCCAGAAAAGGCAGAATGCGCAAGCCGAGGATCG
ACCCGATCCCCCTATGCGTGCTACAGGTCCCGCTGCCCCAACCCTTAGTCCGGCTGGG
Found at i:18324278 original size:159 final size:160
Alignment explanation
Indices: 18323615--18324278 Score: 580
Period size: 159 Copynumber: 4.2 Consensus size: 160
18323605 AACTCCATAT
* * **
18323615 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTATAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * * * * *
18323680 CCGGCCAG-AGAGGCAGAATGTGTAAGCTGGGGATC-AGCCCGGTCCCTCC-CTGCATGCTGTCG
66 CCAGCCAGAAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCC-CCTCTGCGTGCTGCCG
* * *
18323742 ATCCTGCTGCCACAACCCTCGATCCAGTTCGA
129 ATCCTGCTGCCACAACCCTCGATCCGGCTGGA
* * * * * *
18323774 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * * * * * *
18323837 AGCAGGCTGAAAAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTATGCGTGCTACAGG
65 ACCAGCCAGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
* * * *
18323902 TCCCGCTGCCCCAACCCT-TAGTCCGGCTGGG
130 TCCTGCTGCCACAACCCTCGA-TCCGGCTGGA
* * * * * * *
18323933 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGGGCGTGCGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * * * *
18323998 CAAGCC-GAAGAGGCATAATGCGTAAG-CTAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGG
66 CCAGCCAGAAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
* * * *
18324061 TCCAGCTGCCACAACCCTCGGTCTGGCTGGG
130 TCCTGCTGCCACAACCCTCGATCCGGCTGGA
* *
18324092 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCAACCCACAAAACTG-GCGTACGGGCGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CCAACCCACGAAAC-GAGCGTACGGGCGCTC
*
18324156 AACCAGCCAG-AGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTGCCG
64 AACCAGCCAGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCG
* ** *
18324219 ATCCTGCTGTCACAACATTCGATCCGATCT-GA
129 ATCCTGCTGCCACAACCCTCGATCCG-GCTGGA
* * *
18324251 TCCTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18324279 TTAGACTAGG
Statistics
Matches: 406, Mismatches: 84, Indels: 30
0.78 0.16 0.06
Matches are distributed among these distances:
158 11 0.03
159 323 0.80
160 68 0.17
161 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCAGCCAGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGAT
CCTGCTGCCACAACCCTCGATCCGGCTGGA
Found at i:18324293 original size:26 final size:26
Alignment explanation
Indices: 18324254--18324304 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18324244 GATCTGATCC
*
18324254 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18324280 TAGACTAGGG-ATGAACTCCGTATGC
1 TAGACT-GGGAATGAACTCCGTATGC
18324305 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18324668 original size:26 final size:26
Alignment explanation
Indices: 18324630--18324682 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18324620 CCGATCCGAT
*
18324630 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18324656 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
18324682 C
1 C
18324683 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18326126 original size:159 final size:159
Alignment explanation
Indices: 18325540--18326128 Score: 489
Period size: 159 Copynumber: 3.7 Consensus size: 159
18325530 AACTTCATAT
* * * * * * *
18325540 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACAAGTGTGCGGGCGTTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* ** * * * * *
18325605 CCGACCTG-AGAGGCAGAATGCATAAGCGGGGGATCGACCCGGTCCCCC-CTGCGTACTAT-C-G
66 CCAACC-GAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTACGT-GT-TGCTG
* * *
18325666 ATCCT-GCTGCCACAACCCTCGGTCT-GATCCAA
128 ATCCTAGCTGCCACAACCCTCGGT-TGGCT-GAG
* * * * *
18325698 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * * ** * **
18325762 GCCAACCGAAGGGGTATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCCGCTGAT
65 GCCAACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTACGTGTTGCTGAT
* * * *
18325827 CCCA-CTGCCACAACCGTCGGTCCGACTGAG
130 CCTAGCTGCCACAACCCTCGGT-TGGCTGAG
* * * * * *
18325857 GCTTAGTCGTGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* ** * * * *
18325922 -CAAGCCGAAGAGGCATAATGCGCAAG-TCGGGGATTAGCTCGATCCCCCTTTATGTGTTGCTGG
66 CCAA-CCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGATCCCCCTCTACGTGTTGCTGA
*
18325985 T-CTAGCTGCCACAACCCTCGGTTAGGCTGGG
129 TCCTAGCTGCCACAACCCTCGGTT-GGCTGAG
* * * *
18326016 GCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * *
18326081 CCGACCGGAGAGGCAGAATGCGTAAGCTGGAGATCGGCCCAATCCCCC
66 CCAACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCC
18326129 ATGCGTGCTG
Statistics
Matches: 342, Mismatches: 75, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 96 0.28
159 239 0.70
160 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCAACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTACGTGTTGCTGATC
CTAGCTGCCACAACCCTCGGTTGGCTGAG
Found at i:18326918 original size:159 final size:158
Alignment explanation
Indices: 18326579--18327020 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 158
18326569 AACTCCGTAT
** * *
18326579 GCTTAGACAACGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGTGCGGGTGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGA--GT--GTGCCGGCGC
* * * * * *
18326644 TTAGCCGACCAAAGAGACAGAATGCACAAGCCGGGGATC-AGCCCGGTCCCCCCTACGTGCTATC
62 TCAGCCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGA-CCCGGTCCCCCCTACATGCTACC
* *
18326708 GATCCAGCTACCACAACCCTCAGTCTAGTTCGA
126 GATCCAGCCACCACAACCCTCAGTCCAGTTCGA
* * * * *
18326741 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACCGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCCGGCGCTCAG
* * * *
18326806 CCAATCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCTCCCTCTGCATGCTACCGGTC
66 CCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTC-CCCCCTACATGCTACCGATC
* * * *
18326871 TCA-CCGCCACAACCCTC-GATCCGGTTGGG
130 -CAGCCACCACAACCCTCAG-TCCAGTTCGA
* *
18326900 GCTTAGACATGGAATGAACTACC-TATGCCTAAGCCAACCCATGAAATGGGCGTGCCGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCCGGCGCTCA
* * * ** *
18326964 GCCGATAGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTAGT-CCCCCTACGTGCT
65 GCCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACATGCT
18327021 GTCGATCCTA
Statistics
Matches: 234, Mismatches: 41, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
157 10 0.04
158 48 0.21
159 126 0.54
160 6 0.03
162 44 0.19
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCCGGCGCTCAG
CCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTACCGATCC
AGCCACCACAACCCTCAGTCCAGTTCGA
Found at i:18327094 original size:26 final size:26
Alignment explanation
Indices: 18327058--18327110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18327048 CCGGTCCGAT
18327058 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18327084 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18327110 C
1 C
18327111 CTAGTTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18327699 original size:26 final size:26
Alignment explanation
Indices: 18327655--18327710 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
18327645 TCGATCCGAT
* **
18327655 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATAAACTCCATATG
* *
18327681 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACCGGGAATAAACTCCATATG
18327707 CTTA
1 CTTA
18327711 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACCGGGAATAAACTCCATATG
Found at i:18328214 original size:184 final size:183
Alignment explanation
Indices: 18327838--18328227 Score: 483
Period size: 184 Copynumber: 2.1 Consensus size: 183
18327828 GCTCGGTCCG
* * * *
18327838 ATCTTAGACTGGGGATGAGCTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCA
* * ** * * *
18327903 GTAGGCCGAAGAGGCGGTCGGAGAGGCAGAATACGAAAGCCAGGGATCGGCTCGGTCCACCCCTA
66 GTAGCCCGAAAAGGCGAACGGAAAGGCAAAATACGAAAGCCAGGGATCGGCTCGATCCACCCCTA
* *
18327968 CATGCTGTCGATCCTGCTGCTAGTCCTACTACTACAACCCTTGGTCCGATCCG
131 CATGCTGTCGATCCTGCTGCTAGTCCTACTACTACAACCATTGGTCCGATCCA
* * * * *
18328021 ATTTTAGACTGGGGATAAATTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCTTA
1 ATCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCA
* * * * *
18328086 GTAGCCCGAAAAGGCTAACTGGAAAGGTAAAATGCGAAAGTCGGGGATCGGCTCGATCCACCCCT
66 GTAGCCCGAAAAGGCGAAC-GGAAAGGCAAAATACGAAAGCCAGGGATCGGCTCGATCCACCCCT
* * * * * * *
18328151 ATATGCTGTCGATCCTGCTGCTAGTCTTGCTACTGCAACCATTGGTCTGGTCTA
130 ACATGCTGTCGATCCTGCTGCTAGTCCTACTACTACAACCATTGGTCCGATCCA
* *
18328205 ATCTTAGACTGGGAATGAACTCC
1 ATCTTAGACTGGGGATAAACTCC
18328228 ATACGCTTAG
Statistics
Matches: 171, Mismatches: 35, Indels: 1
0.83 0.17 0.00
Matches are distributed among these distances:
183 70 0.41
184 101 0.59
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (183 bp):
ATCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCA
GTAGCCCGAAAAGGCGAACGGAAAGGCAAAATACGAAAGCCAGGGATCGGCTCGATCCACCCCTA
CATGCTGTCGATCCTGCTGCTAGTCCTACTACTACAACCATTGGTCCGATCCA
Found at i:18328586 original size:26 final size:26
Alignment explanation
Indices: 18328550--18328602 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18328540 CTGGTTTGAT
* *
18328550 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
18328576 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18328602 C
1 C
18328603 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:18329674 original size:25 final size:26
Alignment explanation
Indices: 18329626--18329674 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
18329616 CCAATTAGAT
*
18329626 CTTAGACTATGAATGAACTTCGTATG
1 CTTAGACTATGAATGAACTCCGTATG
*
18329652 CTTAGACTA-GGATGAACTCCGTA
1 CTTAGACTATGAATGAACTCCGTA
18329675 CACCTAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (26 bp):
CTTAGACTATGAATGAACTCCGTATG
Found at i:18331095 original size:26 final size:26
Alignment explanation
Indices: 18331057--18331109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18331047 AGCTCAAACT
** *
18331057 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
18331083 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
18331109 C
1 C
18331110 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:18331436 original size:26 final size:26
Alignment explanation
Indices: 18331400--18331452 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18331390 CCAGTTTGAT
18331400 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
18331426 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18331452 C
1 C
18331453 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18332171 original size:26 final size:26
Alignment explanation
Indices: 18332142--18332194 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18332132 CCGGACCGAT
*
18332142 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
18332168 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18332194 C
1 C
18332195 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18333379 original size:26 final size:26
Alignment explanation
Indices: 18333350--18333399 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18333340 CCGGTCTGAT
18333350 CTTAGACTAGGAATGAACTCCGTAAG
1 CTTAGACTAGGAATGAACTCCGTAAG
*
18333376 CTTAGACTAGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
18333400 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAAG
Found at i:18333588 original size:26 final size:26
Alignment explanation
Indices: 18333559--18333611 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18333549 CTAGTCCGAT
18333559 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18333585 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18333611 C
1 C
18333612 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18334098 original size:26 final size:25
Alignment explanation
Indices: 18334057--18334108 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
18334047 CTGGTCTGAT
18334057 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCG-ATG
* *
18334083 CTTAGACTTGGGATGAACTCCGATG
1 CTTAGACTAGGAATGAACTCCGATG
18334108 C
1 C
18334109 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCCGATG
Found at i:18334505 original size:157 final size:157
Alignment explanation
Indices: 18334227--18334509 Score: 354
Period size: 157 Copynumber: 1.8 Consensus size: 157
18334217 GGGCTTAGAC
* * * *
18334227 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCGCTCAGCCGACTGA
1 ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCAAGCGCTCAGCCGACAGA
* *
18334292 AGAGGTAGAATGCACAAGCCAGGGATTGACCCGATCCCCCCTACGTGCTATTGATCCTGCTTAGA
66 AGAGGCAGAATGCACAAGCCAGGGACTGACCCGATCCCCCCTACGTGCTATTGATCCTGCTTAGA
18334357 CTTGGAATGAATTCCGTACGCTTAGGT
131 CTTGGAATGAATTCCGTACGCTTAGGT
* * ** * * *
18334384 ATGGAGTGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCGGTCAG
1 ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCAAGCGCTCAG-CCGACAG
** * * * * *
18334449 -AGAGGCAGAATGTGCAAGCCGGGGACTGGCCCGGTCCCCGCTATGTGCT-TTCGATCCTGCT
65 AAGAGGCAGAATGCACAAGCCAGGGACTGACCCGATCCCCCCTACGTGCTATT-GATCCTGCT
18334510 ACCACAACCC
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
156 2 0.02
157 98 0.94
158 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (157 bp):
ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCAAGCGCTCAGCCGACAGA
AGAGGCAGAATGCACAAGCCAGGGACTGACCCGATCCCCCCTACGTGCTATTGATCCTGCTTAGA
CTTGGAATGAATTCCGTACGCTTAGGT
Found at i:18334610 original size:158 final size:158
Alignment explanation
Indices: 18334390--18334711 Score: 360
Period size: 158 Copynumber: 2.0 Consensus size: 158
18334380 AGGTATGGAG
* * **
18334390 TGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCGGTCAGAGAGGC
1 TGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGAGGC
* * * **
18334455 AGAATGTGCAAGCCGGGGA-CTGGCCCGGTCCC-CGCTATGTGCTTTCGATCCTGCTACCACAAC
66 AGAATGCGCAAGCCGGGGATC-AGCCCGGTCCCTC-CTACGTGCTGCCGATCCTGCTACCACAAC
* ** *
18334518 CCTCATTCTGGTTCGATCTTAGACTGGGAA
129 CCTCAGTCCAGTCCGATCTTAGACTGGGAA
* *** * * *
18334548 TGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAGCCGACCGGAGAGGT
1 TGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGAGGC
* * * * * ** *
18334613 AGAATGCGTAAGCTGGGGATCAGTCCGTTCCCTCCTGCGTGCTGCCGATCCTGCTACTGCAACCT
66 AGAATGCGCAAGCCGGGGATCAGCCCGGTCCCTCCTACGTGCTGCCGATCCTGCTACCACAACCC
18334678 TCAGTCCAGTCCGATCTTAGACTGGGAA
131 TCAGTCCAGTCCGATCTTAGACTGGGAA
18334706 TGAACT
1 TGAACT
18334712 TTGTATGCTT
Statistics
Matches: 134, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
158 132 0.99
159 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
TGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGAGGC
AGAATGCGCAAGCCGGGGATCAGCCCGGTCCCTCCTACGTGCTGCCGATCCTGCTACCACAACCC
TCAGTCCAGTCCGATCTTAGACTGGGAA
Found at i:18334742 original size:25 final size:26
Alignment explanation
Indices: 18334693--18334744 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
18334683 CCAGTCCGAT
**
18334693 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18334719 CTTAGA-TGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18334744 C
1 C
18334745 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18335350 original size:22 final size:22
Alignment explanation
Indices: 18335323--18335366 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
18335313 CGGTTAGGCT
*
18335323 CTCCGGCGATGCTCCGGCGATG
1 CTCCGGCGATGCTCCGACGATG
* *
18335345 CTCCGGGGATGCTTCGACGATG
1 CTCCGGCGATGCTCCGACGATG
18335367 GTGCCCAGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.11, C:0.32, G:0.36, T:0.20
Consensus pattern (22 bp):
CTCCGGCGATGCTCCGACGATG
Found at i:18335366 original size:11 final size:11
Alignment explanation
Indices: 18335323--18335357 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
18335313 CGGTTAGGCT
18335323 CTCCGGCGATG
1 CTCCGGCGATG
18335334 CTCCGGCGATG
1 CTCCGGCGATG
*
18335345 CTCCGGGGATG
1 CTCCGGCGATG
18335356 CT
1 CT
18335358 TCGACGATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.09, C:0.34, G:0.37, T:0.20
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:18335798 original size:158 final size:159
Alignment explanation
Indices: 18335460--18335804 Score: 396
Period size: 159 Copynumber: 2.2 Consensus size: 159
18335450 AACTCCGTAT
*
18335460 GCTTAGACATGGAATGAACTC-CGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * ** * *
18335524 ACCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATTAGCCCGGTCCCCCTCTATATGCTGTCGAT
65 ACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCGATCCCCCTCTATATGCTATCGAT
* * *
18335589 CCTGCTGCCACAACTTTCGGTCCGACTGGG
130 CCTGCTGCCACAACCTTCGATCCGACTGGA
* * * *
18335619 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
* * * ** *
18335684 CCGGCCGAAGAGGCAGAAT-CTGCAAGCCAGGGTTTGGCTTGAT-CCCCTCTATGTGCTATCGAT
66 CCGACCGAAGAGGCAGAATGC-GCAAGCCAGGGATTAGCCCGATCCCCCTCTATATGCTATCGAT
*
18335747 CCTGCTGTCACAACCCTT-GATCCGATCT-GA
130 CCTGCTGCCACAA-CCTTCGATCCGA-CTGGA
* *
18335777 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCTCTATGC
18335805 TTAGACTGGG
Statistics
Matches: 158, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
157 1 0.01
158 62 0.39
159 94 0.59
160 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCGATCCCCCTCTATATGCTATCGATC
CTGCTGCCACAACCTTCGATCCGACTGGA
Found at i:18335807 original size:26 final size:26
Alignment explanation
Indices: 18335778--18335830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18335768 CCGATCTGAT
*
18335778 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18335804 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18335830 C
1 C
18335831 GTAAGGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18335928 original size:184 final size:192
Alignment explanation
Indices: 18335619--18336089 Score: 545
Period size: 196 Copynumber: 2.5 Consensus size: 192
18335609 TCCGACTGGG
* *
18335619 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * ** **
18335683 GCCGGCCGAAGAGGCAGAAT-CTGCAAGCCAGGGTTTGGCTTGATCCCCTCTATGTGCTATCGA-
65 GCCGACCGGAGAGGCAGAATGC-GCAAGCCAAGGATTGACCCGATCCCCTCTACATGCTATCGAC
* *
18335746 T-C-CT-G-C-TG-T-CACAACCCTT-GATCCGATCTGATCTTAGACTGGGAATGAACTCTGTAT
129 TACACTGGTCTTGCTCCACAACCCTTAGATCAG-TCCGATCTTAGACTGGGAATGAACTCTGTAT
* * * * *
18335803 GCTTAGAC-TGGGGATGAACTCCGTATGCGTAAGGCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* *
18335867 GTCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATTGACCCGATCACCC-CTACATGCTATCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATTGACCCGATC-CCCTCTACATGCTATCGA-
* *
18335931 CCTACTACTGGTCTTGCTGCCACAACCCTTAGTTCAGTCCGATCTTAGATTGGGAATGAACTCTG
128 -CTAC-ACTGGTCTTGCT-CCACAACCCTTAGATCAGTCCGATCTTAGACTGGGAATGAACTCTG
18335996 TAT
190 TAT
* *
18335999 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
*
18336064 CCGACCGGAGAGGCAGAATGCTCAAG
66 CCGACCGGAGAGGCAGAATGCGCAAG
18336090 TGGGGCACCG
Statistics
Matches: 237, Mismatches: 32, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
183 2 0.01
184 99 0.42
185 4 0.02
187 1 0.00
188 1 0.00
190 2 0.01
191 1 0.00
192 1 0.00
193 2 0.01
194 1 0.00
196 118 0.50
197 5 0.02
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (192 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATTGACCCGATCCCCTCTACATGCTATCGACTA
CACTGGTCTTGCTCCACAACCCTTAGATCAGTCCGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:18336504 original size:26 final size:26
Alignment explanation
Indices: 18336475--18336527 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18336465 CCGGTCTGAT
*
18336475 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18336501 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18336527 C
1 C
18336528 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18336894 original size:26 final size:25
Alignment explanation
Indices: 18336855--18336906 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
18336845 CCGATCCGAT
18336855 CTTAGACTGGAATGAAC-TCTGTATG
1 CTTAGACTGGAATGAACTTC-GTATG
18336880 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGAC-TGGAATGAACTTCGTATG
18336906 C
1 C
18336907 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 16 0.64
27 2 0.08
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTTCGTATG
Found at i:18337284 original size:26 final size:26
Alignment explanation
Indices: 18337246--18337298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18337236 CTGATCTTAT
*
18337246 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
18337272 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
18337298 C
1 C
18337299 CTAAGCCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:18337408 original size:196 final size:195
Alignment explanation
Indices: 18336692--18337392 Score: 796
Period size: 196 Copynumber: 3.6 Consensus size: 195
18336682 GGGCTTAAAG
* * *
18336692 ATGGAATGAACTCCGTATGCCTAAACCAACCTACGAAATGAGTGTGTC-GGCGCTCAGCCGGCCG
1 ATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTG-CGGGCGCTCAGCCGGCCG
* * * * **
18336756 GAGAGGCAGAATATGGAAGCCAGGGATCGACCCAATCCCCCTTGCGTGCTACCAATCCTACTGTT
65 GAGAGGCAGAATATGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCAATCCTGCTACT
* ** *
18336821 GGTCCTACTGTCGCAAACCTCAATCCGATCCGATCTTAGACT-GGAATGAACTCTGTATGCTTAG
130 GGTCCTACTGTCGCAACCCTCGGTCCGATCCGATCTTAGA-TGGGAATGAACTCCGTATGCTTAG
18336885 AC
194 AC
* * * * * *
18336887 ATGGAATGAACTTCGTATGCCTAAACCAACCCATGAAACGAGTGTGCAGGCACTCAGCTGGCCGG
1 ATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGG
* * * * * *
18336952 AGAGGCAGAATACGAAAGTC-GAGGATCGACCCGATCACCTCTGCGTGCTACCAATCCTGCTGCT
66 AGAGGCAGAATATGCAAGCCAG-GGATCGACCCGATCCCCCCTGCGTGCTACCAATCCTGCTACT
* * *
18337016 GGTCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTATATTGGGAATGAACTCCGTATGCTTAG
130 GGTCCTACTGTCGCAACCCTCGGTCCGATCCGATCTTAGA-TGGGAATGAACTCCGTATGCTTAG
18337081 AC
194 AC
** * * * * * *
18337083 ATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAACGTACGGGCGCTCAGTCGGTCGG
1 ATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGG
* * * * * * *
18337148 AGAGGCAGAATGTGCAAGTCAGAGATCGGCCCGATCCCCCCTGCATGCTATCGATCCTGCTACTG
66 AGAGGCAGAATATGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCAATCCTGCTACTG
** * **
18337213 GTCCTACTACCGCAACCCTCGGTCTGATCTTATCTTAGATAGGGAATGAACTCCGTATGCTTAGA
131 GTCCTACTGTCGCAACCCTCGGTCCGATCCGATCTTAGAT-GGGAATGAACTCCGTATGCTTAGA
18337278 C
195 C
* * * * ** *
18337279 ATGGAATGAACTCCGTATGCCTAAGCCATCACACAAAACGAGCGTGCGGGCGCTCAGCCAACCGA
1 ATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGG
* * * * *
18337344 AGAGGCAGAATGTGCAAGCCGGGGACCGACCCGGTCCCCCCTACGTGCT
66 AGAGGCAGAATATGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCT
18337393 GTCAATGATG
Statistics
Matches: 426, Mismatches: 75, Indels: 9
0.84 0.15 0.02
Matches are distributed among these distances:
194 2 0.00
195 146 0.34
196 277 0.65
197 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (195 bp):
ATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGG
AGAGGCAGAATATGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCAATCCTGCTACTG
GTCCTACTGTCGCAACCCTCGGTCCGATCCGATCTTAGATGGGAATGAACTCCGTATGCTTAGAC
Found at i:18339018 original size:26 final size:26
Alignment explanation
Indices: 18338989--18339041 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18338979 CCGGTCTGAT
*
18338989 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGCATG
**
18339015 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGAAATGAACTCCGCATG
18339041 C
1 C
18339042 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGCATG
Found at i:18339817 original size:159 final size:158
Alignment explanation
Indices: 18339392--18339850 Score: 440
Period size: 159 Copynumber: 2.9 Consensus size: 158
18339382 AACACCGTAT
* * *
18339392 GCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * * *
18339457 TCGGCCGGAGAGGCAGAATGCATAAGTCGGGGATCGACCCGGTCCCGTCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGCCGATCC
* * *
18339522 TGCTGCCCCAACCATCGGTCTGATCCGA
131 TGCTGCCACAACCATCGGTCAGATCAGA
* * * * * * * * *
18339550 TCTTAGAC-TGGGAATAAATTCTATATGCATAAGTCAACCCACGAAACGAGCATGCGAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* ** * * * * ** * *
18339614 GCCTGTCAAAGAGGCATAATGTGGAAACCGAAGATCAGCCTGGTCGCCCTCTGCGTGCTGCCGGC
65 GCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTC-CCCTCTGCGTGCTGCC-GA
* * * *
18339679 TCC-GTTGCCACAACCCTCGGTCCAGCT-AGG
128 TCCTGCTGCCACAACCATCGGT-CAGATCAGA
* * * * *
18339709 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
**
18339774 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGT-CCCTCTGCGTGCTATCGATCC
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGCCGATCC
*
18339838 TGCTACCACAACC
131 TGCTGCCACAACC
18339851 CTTGGTCCGG
Statistics
Matches: 228, Mismatches: 67, Indels: 13
0.74 0.22 0.04
Matches are distributed among these distances:
156 4 0.02
157 25 0.11
158 79 0.35
159 112 0.49
160 8 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGCCGATCC
TGCTGCCACAACCATCGGTCAGATCAGA
Found at i:18339903 original size:26 final size:26
Alignment explanation
Indices: 18339867--18339919 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18339857 CCGGTTCGAT
18339867 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18339893 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18339919 C
1 C
18339920 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18340960 original size:26 final size:26
Alignment explanation
Indices: 18340931--18340983 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18340921 CCGGTCTGAT
18340931 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
**
18340957 CTTAGACTGGGGGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18340983 C
1 C
18340984 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18341167 original size:26 final size:26
Alignment explanation
Indices: 18341128--18341180 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18341118 CTGGTCCAAT
18341128 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
18341154 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGTGAATGAACTCCGTATG
18341180 C
1 C
18341181 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:18341500 original size:158 final size:167
Alignment explanation
Indices: 18341280--18341730 Score: 440
Period size: 158 Copynumber: 2.7 Consensus size: 167
18341270 TGCTATCGAT
* * * * * * *
18341280 CCTATTGCCACAACCCTCGGTCCGATCCGATCTTAGAC-TGGGAATTAACTCCGTACGCCTAAGT
1 CCTACTGCCACAACCCTCGGTCCGCTCAG-GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
* * * ** *
18341344 CAACCCATGAAACGAGCGTGCGGGAGCTGAGCCGGTCGGAGAGGCATAATGTGCAAG-TCGGGGA
64 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCT-GAGGA
** **
18341408 TCAACCCGG-TCCC-CC-TTTGC-GT-G-TTGC-CTGTC-
128 TCAACCCGGTTCCCTCCACGTGCTGTCGATCCCGCTGTCA
*
18341440 CC-ACTGCCACAACCCTCGGTCCGGCT-AGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
1 CCTACTGCCACAACCCTCGGTCC-GCTCAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * *
18341503 AACCCATGAAACGGGCGTACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCTGAGGATC
65 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCTGAGGATC
*
18341568 AGCCCGGTTTCCCTCCACGTGCTGTCGATCCCGCTGTCAA
130 AACCCGG-TTCCCTCCACGTGCTGTCGATCCCGCTGTC-A
* * * * **
18341608 TCCTACTGCCATAAACTTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 -CCTACTGCCACAACCCTCGGTC-CGCTCAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * *
18341673 CAACCCATAAAATGAACGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATACACAAGC
64 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGC
18341731 CAGGGATCGG
Statistics
Matches: 236, Mismatches: 38, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
158 87 0.37
159 22 0.09
160 8 0.03
161 2 0.01
162 3 0.01
163 2 0.01
164 1 0.00
165 2 0.01
166 5 0.02
169 2 0.01
170 19 0.08
171 83 0.35
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (167 bp):
CCTACTGCCACAACCCTCGGTCCGCTCAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCTGAGGATCA
ACCCGGTTCCCTCCACGTGCTGTCGATCCCGCTGTCA
Found at i:18342288 original size:26 final size:26
Alignment explanation
Indices: 18342247--18342299 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18342237 CTAGTTTGAT
*
18342247 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18342273 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18342299 C
1 C
18342300 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18343010 original size:26 final size:25
Alignment explanation
Indices: 18342969--18343020 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
18342959 GGCTCAAAAT
18342969 CTTAGACTGGAATGAACT-TCGTATG
1 CTTAGACTGGAATGAACTCT-GTATG
*
18342994 CTTAGACATTGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCTGTATG
18343020 C
1 C
18343021 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 16 0.67
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTATG
Found at i:18343294 original size:158 final size:158
Alignment explanation
Indices: 18343004--18343395 Score: 378
Period size: 158 Copynumber: 2.5 Consensus size: 158
18342994 CTTAGACATT
* * * * * *
18343004 GAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGA
1 GAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGCAGGCCGAAGA
* ** * ** **
18343069 GGCAGAATGCGCAAGTCGGGGATTGGCCCGATCCCCCCTATGTGCTGTCAATCCTGCTGTCGTAA
66 GGCAGAATGCGCAAGTCGAGGAACGGCCCGATCCCCCCTATGTGCTGTCAATCCCGCTACCACAA
18343134 CCCTCAGACTGATCCGATCTTAGACTGG
131 CCCTCAGACTGATCCGATCTTAGACTGG
* * * *
18343162 GAATGAACT-TCGTATGCATAAGTCAACCCACGAAATGAG-GTGCTGACGCTGAGCAGGCCGAAG
1 GAATGAACTCT-GTATGCATAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGCAGGCCGAAG
* * **
18343225 AGGCATAATGCGCAAGTCGAGGAACGGCCCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTACCAC
65 AGGCAGAATGCGCAAGTCGAGGAACGGCCCGATCCCCC-CTATGTGCTGTCAATCCCGCTACCAC
** * * **
18343290 AACCCTCATTCTG-GCTGGGGCTTAGACAT-G
129 AACCCTCAGACTGATC-CGATCTTAGAC-TGG
** * * * * * * * *
18343320 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATCCGGGCGCTCAGCGGGCCGGAGA
1 GAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGCAGGCCGAAGA
18343385 GGCAGAATGCG
66 GGCAGAATGCG
18343396 TATGCTGGCG
Statistics
Matches: 185, Mismatches: 43, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 54 0.29
158 102 0.55
159 29 0.16
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGCAGGCCGAAGA
GGCAGAATGCGCAAGTCGAGGAACGGCCCGATCCCCCCTATGTGCTGTCAATCCCGCTACCACAA
CCCTCAGACTGATCCGATCTTAGACTGG
Found at i:18343575 original size:13 final size:13
Alignment explanation
Indices: 18343557--18343584 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
18343547 AGGGTGCTCA
18343557 GCCAACCGGAGAG
1 GCCAACCGGAGAG
18343570 GCCAACCGGAGAG
1 GCCAACCGGAGAG
18343583 GC
1 GC
18343585 ATAATGCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.32, G:0.39, T:0.00
Consensus pattern (13 bp):
GCCAACCGGAGAG
Found at i:18344405 original size:27 final size:27
Alignment explanation
Indices: 18344354--18344406 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
18344344 TGGTCCGATC
*
18344354 TTAGACTGGGAATGAACTTCATATGCT
1 TTAGACTGGGAATGAACTCCATATGCT
* *
18344381 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
18344407 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (27 bp):
TTAGACTGGGAATGAACTCCATATGCT
Found at i:18344601 original size:26 final size:26
Alignment explanation
Indices: 18344563--18344615 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18344553 CCGGTCTGAT
*
18344563 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18344589 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
18344615 C
1 C
18344616 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18344757 original size:178 final size:179
Alignment explanation
Indices: 18344554--18344951 Score: 559
Period size: 178 Copynumber: 2.2 Consensus size: 179
18344544 ACCCTCGGTC
* *
18344554 CGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * ** *
18344619 AGCCAACCCAC-GAAACGAGCGTGCGGGCACTCAGCTGGCCGGAGAGGCAGAAT-CGTAAGCCGG
66 AGCCAACCC-CTGAAACGAGCATGCGGGCACTCAACCGGCCGGAAAGGCAGAATGCACAAGCCAG
* *
18344682 GGATCGGCCCGGTCCACCCTGCGTGCTGTCGATCCTG-TAGCCGCAACCCT
130 GGATCGACCCGATCCACCCTGCGTGCTGTCGATCCTGCT-GCCGCAACCCT
*
18344732 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTA
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
*
18344797 AGCCAACCCCTGAAACGAGCATGCGGGCACTCAACCGGCGGGAAAGGCAGAATGCACAAGCCAGG
66 AGCCAACCCCTGAAACGAGCATGCGGGCACTCAACCGGCCGGAAAGGCAGAATGCACAAGCCAGG
* **
18344862 GATCGACCCGATCCACCTTGCGTGCTGTCGATCCTGCTGTTGCAACCCT
131 GATCGACCCGATCCACCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCT
*
18344911 CGATCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGC
1 CG----G-TCTGATCTTAGACTGGGAATGAACTCCGTATGC
18344952 CTAAGTCAAC
Statistics
Matches: 195, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
177 1 0.01
178 108 0.55
179 52 0.27
180 1 0.01
183 1 0.01
184 32 0.16
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (179 bp):
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCCTGAAACGAGCATGCGGGCACTCAACCGGCCGGAAAGGCAGAATGCACAAGCCAGG
GATCGACCCGATCCACCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCT
Found at i:18344779 original size:26 final size:26
Alignment explanation
Indices: 18344741--18344793 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18344731 TCGGTCTGAT
18344741 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18344767 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18344793 C
1 C
18344794 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18345115 original size:159 final size:158
Alignment explanation
Indices: 18344934--18345551 Score: 510
Period size: 159 Copynumber: 3.9 Consensus size: 158
18344924 TCTTAGATTG
* * * *
18344934 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTAAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTAAGCCGGTCGGAG
* * *
18344999 AGGCATAATGTGCAAGCCGGGGATTGGCCCAGTCCCCCTCTGTGTGCTACCGGTCCCACTGCCAC
66 AGGCAGAATGTGCAAGCCGGGGATCGGCCCAGTCCCCC-CTGTGTGCTACCGATCCCACTGCCAC
* *
18345064 ACCCCTCAATTCAGCTGGGGCTTAGACAT
130 AACCCTCAGTTCAGCTGGGGCTTAGACAT
** * *
18345093 GGAATGAACTCTATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAA-CCGAG--GG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCT-AAGCCG-GTCGG
* * * ** * * *
18345155 AGAGGCAGAATATGCAAGTCGAGGATCGGTTCAGTCACCCCTGTGTGCTATCGATCCTACTGCCA
64 AGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAGTCCCCCCTGTGTGCTACCGATCCCACTGCCA
* * * ** *
18345220 TTAACCCTC-GGTCTGGTCT-GATCTTTAGACCT
129 -CAACCCTCAGTTC-AG-CTGGGGC-TTAGACAT
* * ** ** * **
18345252 GGAATGAGCTCTGTATGCCTAAGTTAACCCATAAAATGAGCGTACGGGCGCTGAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTAAGCCGGTCGGAG
* * * * * ** ** *
18345317 AGGCCATAATGCGGTAAGCCAGCGATCATCCC-GCTCCCCCTCTGTGTGCTGTCGATCCCGCTGC
66 AGG-CAGAATG-TGCAAGCCGGGGATCGGCCCAG-TCCCCC-CTGTGTGCTACCGATCCCACTGC
* * *
18345381 CACAACCCTCGGTCCAGCTGGGGCTTAAACAT
127 CACAACCCTCAGTTCAGCTGGGGCTTAGACAT
* * ** * * * *
18345413 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGTGTTCAGCAGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTAAGCCGGTCGGAG
* ** * * * **
18345478 AGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACA
66 AGGCAGAATGTGCAAGCCGGGGATCGGCCCAGTCCCCCCTGTGTGCTACCGATCCCACTGCCACA
18345543 ACCCTCAGT
131 ACCCTCAGT
18345552 CCAGTCCAAT
Statistics
Matches: 355, Mismatches: 88, Indels: 33
0.75 0.18 0.07
Matches are distributed among these distances:
157 24 0.07
158 76 0.21
159 124 0.35
160 16 0.05
161 66 0.19
162 25 0.07
163 24 0.07
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTAAGCCGGTCGGAG
AGGCAGAATGTGCAAGCCGGGGATCGGCCCAGTCCCCCCTGTGTGCTACCGATCCCACTGCCACA
ACCCTCAGTTCAGCTGGGGCTTAGACAT
Found at i:18345547 original size:158 final size:156
Alignment explanation
Indices: 18344766--18345588 Score: 601
Period size: 158 Copynumber: 5.2 Consensus size: 156
18344756 AACTCCGTAT
* * * *
18344766 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC-CTGAAACGAGCATGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAATGAGCGTGCGGGCGCTCA
* * * * * * * * *
18344830 ACCGGCGGGAAAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCACCTTGCGTGCTGTCGATC
65 GCCGGC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATC
*** * * *
18344895 CTGCTGTTGCAACCCTCGATCTGATCTGA
129 CTGCTGCCACAACCCTCGGTC-CAGCTGA
* * * * * *
18344924 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * ** *
18344988 GCCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATTGGCCCAGTCCCCCTCTGTGTGCTACCGGT
65 GCCGG-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGTGTGCTGTCGAT
** * ** * *
18345053 CCCACTGCCACACCCCTCAATTCAGCTGGG
128 CCTGCTGCCACAACCCTCGGTCCAGCT-GA
** * * * *
18345083 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * * ** * * *
18345148 CCGAG-GGAGAGGCAGAATATGCAAGTCGAGGATCGGTTCAGTCACCCCTGTGTGCTATCGATCC
66 CCG-GCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCC
* * **
18345212 TACTGCCATTAACCCTCGGTCTGGTCTGA
130 TGCTGCCA-CAACCCTCGGTCCAG-CTGA
* * * * ** ** * *
18345241 TCTTTAGACCTGGAATGAGCTCTGTATGCCTAAGTTAACCCATAAAATGAGCGTACGGGCGCTGA
1 GC-TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * ** *
18345306 GCCGACCGGAGAGGCCATAATGCGGTAAGCCAGCGATCATCCCGCTCCCCCTCTGTGTGCTGTCG
65 GCCG-GCGGAGAGG-CAGAATGC-GCAAGCCGGGGATCGGCCCGGTCCCCC-CTGTGTGCTGTCG
* *
18345371 ATCCCGCTGCCACAACCCTCGGTCCAGCTGGG
126 ATCCTGCTGCCACAACCCTCGGTCCAGCT-GA
* * * * * *
18345403 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
18345468 CAGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
66 CCGG-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCC
* **
18345533 TGCTGCCACAACCCTCAGTCCAGTCCAA
130 TGCTGCCACAACCCTCGGTCCAG-CTGA
* *
18345561 TCTTAGAC-TGGGAATGAACTCCTTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18345589 TTAGACTGGG
Statistics
Matches: 511, Mismatches: 136, Indels: 36
0.75 0.20 0.05
Matches are distributed among these distances:
157 24 0.05
158 194 0.38
159 162 0.32
160 15 0.03
161 65 0.13
162 29 0.06
163 22 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCAGCTGA
Found at i:18345598 original size:26 final size:26
Alignment explanation
Indices: 18345562--18345617 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18345552 CCAGTCCAAT
*
18345562 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18345588 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18345614 CTTA
1 CTTA
18345618 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18345749 original size:183 final size:184
Alignment explanation
Indices: 18345416--18345763 Score: 459
Period size: 183 Copynumber: 1.9 Consensus size: 184
18345406 TAAACATGGA
* * * * *
18345416 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGTGTTCAGCAGGTCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCAGATCGGAGAGG
*
18345481 TAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACC
66 TAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACC
18345546 CTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGG
131 CTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGG
* * * *
18345600 ATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTAGATCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCAGATCGGAGAGG
* ** * * * * *
18345665 TAG-ATGCGCAAGTTGGGGATCGACCCGGTCCCTCCC-GCGTGCTGTCGATCTTGTTGTCGCAAC
66 TAGAATGCACAAGCCGGGGATCGACCCGGTCCC-CCCTGCGTGCTGCCGATCCTGCTGCCACAAC
** * *
18345728 CCTTGGTCC-CTGCCGATCTTAGACTGGGAATGAACT
130 CCTCAGTCCAGT-CCAATCTTAGACTGGGAATGAACT
18345764 TCGTATGCAT
Statistics
Matches: 140, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
182 1 0.01
183 77 0.55
184 62 0.44
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCAGATCGGAGAGG
TAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACC
CTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGG
Found at i:18346064 original size:498 final size:500
Alignment explanation
Indices: 18345239--18346146 Score: 1165
Period size: 498 Copynumber: 1.8 Consensus size: 500
18345229 GGTCTGGTCT
* * * * *
18345239 GATCTTTAGACCTGGAATGAGCTCTGTATGCCTAAGTTAACCCATAAAATGAGCGTACGGGCGCT
1 GATCTTTAGACCTGGAATGAACTCTGTATGCATAAGTCAACCAATAAAACGAGCGTACGGGCGCT
* * * * * *
18345304 GAGCCGACCGGAGAGGCCATAATGCGGTAAGCCAGCGATCATCCCGCTCCCCCTCTGTGTGCTGT
66 GAGCCGACCGAAGAGGCCATAATGCGGCAAGCCAGCGATCAGCCCGATCCCCCTCAGTGTGCTGC
* *
18345369 CGATCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTA
131 CGATCCCGCTACCACAACACTCGGTCCAGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTA
* * * * * * ** *
18345434 AGCCAACCCACGAAATGGGCGTGTGGGTGTTCAGCAGGTCGGAGAGGTAGAATGCACAAGCCGGG
196 AGCCAACCCACGAAACGGGCCTGAGGGCGCTCAACAGACCGGAGAGATAGAATGCACAAGCCGGG
* * * *
18345499 GATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAGTCCAATCT
261 GATCGGCCCAGTCCCCCCTACGTGCTGCCGATACTACTGCCACAACCCTCAGTCCAGTCCAATCT
*
18345564 TAGACTGGGAATGAACTCCT-TATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACCCA
326 TAGACTGGGAATGAACT-CTGTATGCTTAGACTGGGGAT-AACTCCGTATGC-GAAGTCAACCCA
18345628 CGAAATGAGCGT-GCGGGCGCTCAGTAGATCGGAGAGGTAGATGCGCAAGTTGGGGATCGACCCG
388 CGAAA-GA-CGTGGCGGGCGCTCAGTAGATCGGAGAGGTAGATGCGCAAGTTGGGGATCGACCCG
18345692 GTCCCTCCCGCGTGCTGTCGATCTTGTTGTCGCAACCCTTGGTCCCTGCC
451 GTCCCTCCCGCGTGCTGTCGATCTTGTTGTCGCAACCCTTGGTCCCTGCC
* *
18345742 GATC-TTAGA-CTGGGAATGAACT-TCGTATGCATAAGTCAACCAATGAAACGAGCGTGCGGGCG
1 GATCTTTAGACCT-GGAATGAACTCT-GTATGCATAAGTCAACCAATAAAACGAGCGTACGGGCG
* * * *
18345804 CTGAG-CGACCGAAGAGG-CATAATGC-GCATGCTAGGGATC-GGCCGATCCCCCTCAGTGTGCT
64 CTGAGCCGACCGAAGAGGCCATAATGCGGCAAGCCAGCGATCAGCCCGATCCCCCTCAGTGTGCT
* * * * *
18345865 GCC-AGTCTCGCTACCACAACACTTGGTCGA-CTGGGTCTTAGACATGGAATGAACTCCCTATGC
129 GCCGA-TCCCGCTACCACAACACTCGGTCCAGCTGGGGCTTAAACATGGAATGAACTCCCTATGC
* * *
18345928 CTAAGCCAACCCATGAAACGGGCCTGCAGGGCGCTCAACCGACCGGAGAGATAGAATGCGCAAGC
193 CTAAGCCAACCCACGAAACGGGCCTG-AGGGCGCTCAACAGACCGGAGAGATAGAATGCACAAGC
* ** * * * *
18345993 CGGGGATCGGCCTAGTCCCTTCTACGTGCTGTCGATACTACTGTCGCAACCCTC-GATCCAGTTC
257 CGGGGATCGGCCCAGTCCCCCCTACGTGCTGCCGATACTACTGCCACAACCCTCAG-TCCAGTCC
* * * *
18346057 GATCTTAGACTGGGAATGAACTTTGTATTCTTAGACTGGGGATAATTCCGTATGCGAAGTCAACC
321 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATAACTCCGTATGCGAAGTCAACC
*
18346122 CATGAAAGACGTGGCGGGCGCTCAG
386 CACGAAAGACGTGGCGGGCGCTCAG
18346147 CAGACCGAGA
Statistics
Matches: 345, Mismatches: 53, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
494 3 0.01
495 14 0.04
496 15 0.04
497 68 0.20
498 158 0.46
499 10 0.03
500 8 0.02
501 14 0.04
502 51 0.15
503 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (500 bp):
GATCTTTAGACCTGGAATGAACTCTGTATGCATAAGTCAACCAATAAAACGAGCGTACGGGCGCT
GAGCCGACCGAAGAGGCCATAATGCGGCAAGCCAGCGATCAGCCCGATCCCCCTCAGTGTGCTGC
CGATCCCGCTACCACAACACTCGGTCCAGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACGGGCCTGAGGGCGCTCAACAGACCGGAGAGATAGAATGCACAAGCCGGG
GATCGGCCCAGTCCCCCCTACGTGCTGCCGATACTACTGCCACAACCCTCAGTCCAGTCCAATCT
TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATAACTCCGTATGCGAAGTCAACCCACGA
AAGACGTGGCGGGCGCTCAGTAGATCGGAGAGGTAGATGCGCAAGTTGGGGATCGACCCGGTCCC
TCCCGCGTGCTGTCGATCTTGTTGTCGCAACCCTTGGTCCCTGCC
Found at i:18346779 original size:26 final size:26
Alignment explanation
Indices: 18346739--18346790 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18346729 TAGTCCGATT
*
18346739 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
18346765 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18346791 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18347386 original size:11 final size:11
Alignment explanation
Indices: 18347370--18347405 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
18347360 TGGTTAGGCT
18347370 CTCCGACGATG
1 CTCCGACGATG
18347381 CTCCGACGATG
1 CTCCGACGATG
* *
18347392 CTCTGGCGATG
1 CTCCGACGATG
18347403 CTC
1 CTC
18347406 TGGCGATGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.14, C:0.36, G:0.28, T:0.22
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:18347406 original size:11 final size:11
Alignment explanation
Indices: 18347376--18347413 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
18347366 GGCTCTCCGA
* *
18347376 CGATGCTCCGA
1 CGATGCTCTGG
18347387 CGATGCTCTGG
1 CGATGCTCTGG
18347398 CGATGCTCTGG
1 CGATGCTCTGG
18347409 CGATG
1 CGATG
18347414 GTGCCTGGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.13, C:0.29, G:0.34, T:0.24
Consensus pattern (11 bp):
CGATGCTCTGG
Found at i:18349592 original size:26 final size:26
Alignment explanation
Indices: 18349554--18349604 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18349544 GGCTCAAAAT
18349554 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18349580 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
18349605 TCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18350001 original size:159 final size:156
Alignment explanation
Indices: 18349579--18350007 Score: 375
Period size: 159 Copynumber: 2.7 Consensus size: 156
18349569 AACTCCGTAT
* * * *
18349579 GCTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCAGGTGCTCAG
* * * * **
18349644 CCGGCCGGAGAGACAGAATACGCAAGTCGAGGATCGGCCCAGTCCCCCCTACGTGCTATTGATCC
66 CCGGCC-GAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCC
** *
18349709 TTCTACTGCAACCCTCGGTTCGGTCCGA
130 CGCTAC-GCAACCCTCGGTTCGCTCCGA
* * * * * * *
18349737 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGGCAACCCACGAAATGAGCATACGAGCGT--T
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGC-AG-GTGCT
* ** * * * * * * *
18349799 GAGCCAACCGAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTTTACGTGCTGCCG
63 CAGCCGGCCG-AGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC-CTACGTGCTACCG
* * *
18349864 GTCCCGCTAC-CATAGCCCTCGG-TC-CTACTGGG
126 ATCCCGCTACGCA-A-CCCTCGGTTCGCT-C-CGA
* *
18349896 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCAGGTGCTCAG
* *
18349961 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGATCCCC
66 CCGGCC-GAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCC
18350008 ACTGCGTGTT
Statistics
Matches: 207, Mismatches: 51, Indels: 25
0.73 0.18 0.09
Matches are distributed among these distances:
157 7 0.03
158 88 0.43
159 109 0.53
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCAGGTGCTCAG
CCGGCCGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCCC
GCTACGCAACCCTCGGTTCGCTCCGA
Found at i:18350586 original size:26 final size:26
Alignment explanation
Indices: 18350536--18350588 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18350526 CCGGTCTGAT
**
18350536 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18350562 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18350588 C
1 C
18350589 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18351423 original size:26 final size:26
Alignment explanation
Indices: 18351394--18351446 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18351384 CTGATCCGAT
18351394 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18351420 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18351446 C
1 C
18351447 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18351665 original size:13 final size:13
Alignment explanation
Indices: 18351647--18351681 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
18351637 CTCAACCAAC
18351647 CGGAGAGGCCGGT
1 CGGAGAGGCCGGT
18351660 CGGAGAGGCCGGT
1 CGGAGAGGCCGGT
*
18351673 CGGAAAGGC
1 CGGAGAGGC
18351682 ATAATGCGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.20, C:0.23, G:0.51, T:0.06
Consensus pattern (13 bp):
CGGAGAGGCCGGT
Found at i:18353552 original size:26 final size:26
Alignment explanation
Indices: 18353523--18353575 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18353513 CCGGTCTGAT
18353523 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
18353549 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
18353575 C
1 C
18353576 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:18354475 original size:627 final size:625
Alignment explanation
Indices: 18353276--18354524 Score: 1616
Period size: 627 Copynumber: 2.0 Consensus size: 625
18353266 CACAAGCTGA
* *
18353276 GGATCAGCCCGATCCCCCTCTGTGTGCTGTCAATCCCGCTACCGGTCCTACTGCCACAACCCTCG
1 GGATCAGCCCGATCCCCCTCTGTGCGCTGTCAATCCCGCTACCAGTCCTACTGCCACAACCCTCG
* * * *
18353341 GTCTGACTAGGGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTA
66 GTCCGACTAGGGCTTAGACATAGAATGAACTCCGTATACCTAAGCCAAACCACGAAATGAACGTA
* * ** * *
18353406 CGGGCGAGAGTCTGACCGGACAGGCAGAATGCGCAAGCCGGGGATCAACCGGTCCCCCACTGCAT
131 CGAGCGACAGTCCAACCGGACAGGCAAAATGCGCAAGCCAGGGATCAACCGGTCCCCCACTG-AT
* * * *
18353471 GTGGTCGATCTTGCTGTTGGTCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
195 GTGGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAA
** *
18353536 TGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGT
260 TGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
* *
18353601 GTGGGCGTTCAGTCGGTCGAAAAGGGAGAATGCGCAAGCCGGGGACCGGACCAGTCCCCCCTGCG
325 GCGGGCGTTCAGTCGGTCGAAAAGGCAGAATGCGCAAGCCGGGGACCGGACCAGTCCCCCCTGCG
* * * *
18353666 TGCTATCGATCCTACTGTCGCAACCCTTTGTCCGATCCAATCTTTGACTAGGAATGAACTTCGTA
390 TGCTATCGATCCTACTGCCGCAACCCTTGGTCCGATCCAATCTTAGACTAGGAATAAACTTCGTA
* ** * *
18353731 TGCCTAAGTCAAACCATGAAATTAGCGTTCGGGCATTGAGCCGGCCGAAGAGGCATAACGCGCAA
455 TGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCA-TGAGCCGACCGAAGAGGCATAACGCGCAA
* * ** * *
18353796 GCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCAGTCTCGCTGCCACAACCCTCGGTCCAAC
519 GCCAGGGATCGGCCCGAACCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCAAC
*
18353861 AGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGAATGG
584 AGGGGCTTAAACATGGAATAAACTCCCTATGCCTAAGAATGG
* * * * * *
18353903 GGATCAGCCCGATCCCCTTCTGTGCGCTGTCGATCCCGCTGCCAGTCCTGCTGCCATAACCTTCG
1 GGATCAGCCCGATCCCCCTCTGTGCGCTGTCAATCCCGCTACCAGTCCTACTGCCACAACCCTCG
* * *
18353968 GTCCGACTGGGGCTTAGACAT-GCAATGAACTCCGTATACCTAGGTCAAACCACGAAATGAACGT
66 GTCCGACTAGGGCTTAGACATAG-AATGAACTCCGTATACCTAAGCCAAACCACGAAATGAACGT
* * * *
18354032 GCGAGC-ACTCAG-CCAACCGGAGAGGCAAAATGTGCAAGCCAGGGATCGACCCGGTCCCCC-CT
130 ACGAGCGA--CAGTCCAACCGGACAGGCAAAATGCGCAAGCCAGGGATC-AACCGGTCCCCCACT
* * *
18354094 G-TGTGCTGTTGATCCTGCTGCTGGTCCTGCTACCGTAACCCTCAGTCCGGTCCGATCTTAGACT
192 GATGTG--GTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCAGTCCGGTCCGATCTTAGACT
18354158 GGGAATGAACTCCATATGCTTAGACATGG-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
255 GGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
* * * * * * * *
18354222 AGCGTGCGGGCTTTCAGTCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGACTGGCCCGGATCTCC
320 AGCGTGCGGGCGTTCAGTCGGTCGAAAAGGCAGAATGCGCAAGCCGGGGACCGGACCAG-TCCCC
* * * * * *
18354287 CCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATAAAC
384 CCTGCGTGCTATCGATCCTACTGCCGCAACCCTTGGTCCGATCCAATCTTAGACTAGGAATAAAC
* *
18354352 TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGATGC-TGAGCCGACCGGAG-GGCCATA
449 TTCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGG--GCATGAGCCGACCGAAGAGG-CATA
* * * **
18354415 ATGCGTAAGCCAGGGATTGGCCCGAACCCCCTCTGCGTGCTG-TTGATCCCGCTACCACAACCCT
511 ACGCGCAAGCCAGGGATCGGCCCGAACCCCCTCTGCGTGCTGCCAG-TCCCGCTACCACAACCCT
* ** *
18354479 CGGTCCGATTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAG
575 CGGTCCAACAGGGGCTTAAACATGGAATAAACTCCCTATGCCTAAG
18354525 CCAACCCACA
Statistics
Matches: 533, Mismatches: 78, Indels: 22
0.84 0.12 0.03
Matches are distributed among these distances:
625 4 0.01
626 89 0.17
627 425 0.80
628 13 0.02
629 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (625 bp):
GGATCAGCCCGATCCCCCTCTGTGCGCTGTCAATCCCGCTACCAGTCCTACTGCCACAACCCTCG
GTCCGACTAGGGCTTAGACATAGAATGAACTCCGTATACCTAAGCCAAACCACGAAATGAACGTA
CGAGCGACAGTCCAACCGGACAGGCAAAATGCGCAAGCCAGGGATCAACCGGTCCCCCACTGATG
TGGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
CGGGCGTTCAGTCGGTCGAAAAGGCAGAATGCGCAAGCCGGGGACCGGACCAGTCCCCCCTGCGT
GCTATCGATCCTACTGCCGCAACCCTTGGTCCGATCCAATCTTAGACTAGGAATAAACTTCGTAT
GCCTAAGTCAAACCACGAAACGAGCGTGCGGGCATGAGCCGACCGAAGAGGCATAACGCGCAAGC
CAGGGATCGGCCCGAACCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCAACAG
GGGCTTAAACATGGAATAAACTCCCTATGCCTAAGAATGG
Found at i:18354497 original size:159 final size:159
Alignment explanation
Indices: 18354334--18354798 Score: 493
Period size: 159 Copynumber: 2.9 Consensus size: 159
18354324 CTGGTCCAAT
* * *
18354334 CTTAGAC-TGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGATGCTGAG
1 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGATGCTGAG
* * * * *
18354398 CCGACCG--GAGGGCCATAATGCGTAAGCCAGGGATTGGCCCGAA-CCCCCTCTGCGTGCTGTTG
65 CCGACCGATGA-GG-CATAATGCGCAAGCCAGGGATCGGCCC-AATCCCCCTCTACATGCTGTCG
* * *
18354460 ATCCCGCTACCACAACCCTCGGTCCGATTGGGG
127 ATCCCACTACCACAACCCTCGATCCGATTAGGG
* * * *
18354493 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTGAGC
1 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGATGCTGAGC
* * *
18354558 CGGCCGATGAGGCATAATGCGCAAGCCAGGGATCGGCCCAATCCCCCTCTATATGCTGTCGGTCC
66 CGACCGATGAGGCATAATGCGCAAGCCAGGGATCGGCCCAATCCCCCTCTACATGCTGTCGATCC
* *
18354623 CACTGCCACAACCCTCGATCCGGTTAGGG
131 CACTACCACAACCCTCGATCCGATTAGGG
* * *
18354652 CTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG--GCGTCAG
1 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGATGC-TGAG
* * * * * * **
18354715 CC-AGCTGGA-GAGGCAGAATGCGCAAGCCGGGGAAT-GACCCGAT--CCCTCTACGTGCTACCG
65 CCGA-C-CGATGAGGCATAATGCGCAAGCCAGGG-ATCGGCCCAATCCCCCTCTACATGCTGTCG
*
18354775 ATCCTACTACCACAACCCTCGATC
127 ATCCCACTACCACAACCCTCGATC
18354799 TGGTCCGATC
Statistics
Matches: 259, Mismatches: 39, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
156 34 0.13
157 2 0.01
158 35 0.14
159 183 0.71
160 3 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGATGCTGAGC
CGACCGATGAGGCATAATGCGCAAGCCAGGGATCGGCCCAATCCCCCTCTACATGCTGTCGATCC
CACTACCACAACCCTCGATCCGATTAGGG
Found at i:18355911 original size:159 final size:158
Alignment explanation
Indices: 18355556--18356001 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 158
18355546 ACTTCGTACA
* *
18355556 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCTCGCAGGCATTCAG
1 CTTAAACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGACGCTCG-AGGGATT-AG
* * * * * * *
18355620 CCGGTCAGAGAGGCAGAATACGCAAGCTGGGGACCGGCCAGAT-CTCCTCTGCGTGCTATCGATC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCCTCTACGTGCTATCGATC
* * * * *
18355684 CTGCTGCCGCAACCCTCGGTTCGATTCAAT
129 CCGCTACCACAACCCTCAGTCCGATTCAAT
* * *
18355714 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAACGTTCG-GGGGTTG
1 CTTAAACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACG-ACGCTCGAGGGATT-
* * * *
18355776 AGCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGATCCCCCTCTACGTGCTGTCGG
62 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCCTCTACGTGCTATCGA
* ***
18355841 TCCCGCTACCACAACCCTCAGTCCGGTTGGGT
127 TCCCGCTACCACAACCCTCAGTCCGATTCAAT
* * * * ** * * *
18355873 CTTATACATGGAATGAACTCCCTATACCTAAGCTAACCCACAAAACGGACGGGCGAGCGCTTAGT
1 CTTAAACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAAC-GACGCTCGAGGGATTAGC
* * * * * *
18355938 CGGCCGAAGAGGCAGAATGCACAAGGCGGGGATCTGCCCGATCCCCC-CTACGTGCTATTGATCC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCCTCTACGTGCTATCGATCC
18356002 TGCTGTCGCA
Statistics
Matches: 235, Mismatches: 44, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 98 0.42
159 125 0.53
160 11 0.05
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAAACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGACGCTCGAGGGATTAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCCTCTACGTGCTATCGATCCC
GCTACCACAACCCTCAGTCCGATTCAAT
Found at i:18356068 original size:26 final size:26
Alignment explanation
Indices: 18356032--18356083 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18356022 CGATCTGATG
*
18356032 TTAGGCTAGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
*
18356058 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
18356084 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:18356204 original size:184 final size:184
Alignment explanation
Indices: 18355942--18356292 Score: 463
Period size: 184 Copynumber: 1.9 Consensus size: 184
18355932 CTTAGTCGGC
** * *
18355942 CGAAGAGGCAGAATGCACAAGGCGGGGATCTGCCCGATCCCCCCTACGTGCTATTGATCCTGCTG
1 CGAAGAGGCAGAATGCACAAGGCGGGGATAGGCCCGATCCCCCCTACGTGCTATCGATCCTGCTA
* * * *
18356007 TCGCAACCCTCGATCCGATCTGATGTTAGGCTAGG-AATGAACTCCATATGCTTAGACTAGGAAT
66 TCGCAACCCTCGATCCGATCTGATCTTAGACT-GGAAATAAACTCCATATGCTTAAACTAGGAAT
* *
18356071 GAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGTTCAGCCAGT
130 GAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGCCAGT
* * * * *
18356126 CGAAGAGGCAGAATGCACAAGTCGGGTATAGGCTCGGTCCCCCCCTACGTGCTGTCGATCCTGC-
1 CGAAGAGGCAGAATGCACAAGGCGGGGATAGGCCCGAT-CCCCCCTACGTGCTATCGATCCTGCT
* * ** * *
18356190 ATCGCAATCCTCGATCTGATCTGATCTTAGACTGGAAATAAACTCTGTATGCTTAAACTGGGGAT
65 ATCGCAACCCTCGATCCGATCTGATCTTAGACTGGAAATAAACTCCATATGCTTAAACTAGGAAT
* *
18356255 GAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGT
130 GAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGT
18356293 TTGGGGGCTC
Statistics
Matches: 142, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 117 0.82
185 23 0.16
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (184 bp):
CGAAGAGGCAGAATGCACAAGGCGGGGATAGGCCCGATCCCCCCTACGTGCTATCGATCCTGCTA
TCGCAACCCTCGATCCGATCTGATCTTAGACTGGAAATAAACTCCATATGCTTAAACTAGGAATG
AACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGCCAGT
Found at i:18356566 original size:26 final size:26
Alignment explanation
Indices: 18356530--18356582 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18356520 CCGGTCCGAT
*
18356530 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18356556 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18356582 C
1 C
18356583 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18356942 original size:26 final size:26
Alignment explanation
Indices: 18356910--18356962 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18356900 CCATTATGAT
*
18356910 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18356936 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18356962 C
1 C
18356963 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18358350 original size:26 final size:26
Alignment explanation
Indices: 18358314--18358366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18358304 CCAGTTCCAT
*
18358314 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
18358340 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
18358366 C
1 C
18358367 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:18359416 original size:26 final size:26
Alignment explanation
Indices: 18359380--18359431 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18359370 CTGGTCAGAT
18359380 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18359406 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18359432 TCTAAGTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18359892 original size:159 final size:157
Alignment explanation
Indices: 18359589--18360035 Score: 486
Period size: 159 Copynumber: 2.8 Consensus size: 157
18359579 TCCAGTTGGG
* *
18359589 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCCG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * * *
18359654 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCCTGCGTGCTATCGATC
66 -CCGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGT-CCCCCCTGCGTGCTGTCGATC
** * ** * *
18359719 CTGCTATCGTAACCCTTGG-TCTGATCAGA
129 CCACTACCACAACCCTCGGTTCGGAT-AGA
* * * * * *
18359748 TCTTGGA-ATGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
* * *
18359812 GCCAGACGGAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGAT
65 GCC-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGAT
* * *
18359877 CCCACTACCACAACCCTCGGTTCGGCTGGG
128 CCCACTACCACAACCCTCGGTTCGGATAGA
** * * *
18359907 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * *
18359972 CCGACCAGAGAGGCGGAATGCGTAAGCAGGGGATCGGCCTGGT-CCCCCTGCGTGCTGTCGATCC
66 CCGA-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
18360036 TATTGTCGCA
Statistics
Matches: 237, Mismatches: 45, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 17 0.07
158 14 0.06
159 200 0.84
160 6 0.03
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
CCGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCC
ACTACCACAACCCTCGGTTCGGATAGA
Found at i:18360101 original size:26 final size:27
Alignment explanation
Indices: 18360065--18360122 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
18360055 CCTGTCCGAT
18360065 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
* *
18360091 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
18360118 CTTAG
1 CTTAG
18360123 TCAACCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:18360827 original size:26 final size:26
Alignment explanation
Indices: 18360789--18360841 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18360779 GGCTCAAAAT
18360789 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18360815 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18360841 C
1 C
18360842 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18361579 original size:26 final size:26
Alignment explanation
Indices: 18361541--18361590 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18361531 ATCCGATCTT
*
18361541 AGACTGGGAATGAACTTCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
18361567 AGACTGCGG-ATGAACTCCGTATGC
1 AGACTG-GGAATGAACTCCGTATGC
18361591 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:18361764 original size:184 final size:183
Alignment explanation
Indices: 18361380--18361931 Score: 592
Period size: 183 Copynumber: 3.0 Consensus size: 183
18361370 TCAAGCTGAG
* * * *
18361380 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCA
* * * * * * *
18361444 GTCGACCGGAAG-GCAGAATACGTAAGTTGGGGATCGGCCCAGTCCCCCCAGCATGCTGCCAATC
65 GTCGACC-GAAGAGCAAAATGCGTAAGCTGGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATC
* * ** * * *
18361508 CTGCTACCGCAACCCTTAGACCAATCCGATCTTAGACTGGGAATGAACTTCGTAT
129 CTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTCGGAATGAACTCCGTAT
* * * *
18361563 GCTCAGACTGCGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
* * * * * * * *
18361628 CCGACTGAAGAGCCAAAATGCGCAAGCCGGGGATCAGCCTGGTCCCCACTGCGTGCTACCGATCC
66 TCGACCGAAGAG-CAAAATGCGTAAGCTGGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCC
* * * * *
18361693 TGCTACCGTAACCCTCAGTCTGGTCTAATCTTAGACTCAGAATGAACTCCATAT
130 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTCGGAATGAACTCCGTAT
* * * * *
18361747 GCTTAGACTGGGGATGAACTCCGTATGACTAAGTCAACCCACAAAATGAGCATGCGGACACTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
* * * * * *
18361812 TCGACCAAAAAGGC-AGATGCGTAATCTGAGGA-CTAGCCCGGTCCCCCCTGCATGCTGTCGATC
66 TCGACCGAAGA-GCAAAATGCGTAAGCTGGGGATC-AGCCCGGTCCCCCCTGCATGCTGCCGATC
*
18361875 CTGCTACTGCAACCCTCAGTCCGGTCTGATCTTAGAC-CGGGAATGAACTCCGTAT
129 CTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTC-GGAATGAACTCCGTAT
18361930 GC
1 GC
18361932 CTAAGTCAAC
Statistics
Matches: 299, Mismatches: 64, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
182 7 0.02
183 146 0.49
184 145 0.48
185 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (183 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
TCGACCGAAGAGCAAAATGCGTAAGCTGGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCCT
GCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTCGGAATGAACTCCGTAT
Found at i:18362090 original size:159 final size:158
Alignment explanation
Indices: 18361847--18362248 Score: 391
Period size: 159 Copynumber: 2.5 Consensus size: 158
18361837 CTGAGGACTA
* ** * *
18361847 GCCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACTGCAACCCTCAGTCCGGTCTGATCTTAGAC
1 GCCCGGTCCCCCCTGCGTGCTGTCGATCCAACTACTGCAACCCTCAGTCCAGTCTGAGCTTAGAC
* * * * *
18361912 CGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAA-CGAGCGTTCGGGGGCTGAGC-CAATC
66 AGGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACCGA-CGTGCGGGGGCTCAGCTCAAT-
* ** * *
18361975 GGAGAGGCATAATGTGCAAGCTGGGGATCG
129 GGAGAGGCAGAATGCACAAGCCGAGGATCG
* * *
18362005 GCCCGGTCCCCCTCTGCGTGCTGTCGGTCCAACT-GTGACAACCCTCGGTCCAG-CTGAGGCTTA
1 GCCCGGTCCCCC-CTGCGTGCTGTCGATCCAACTACTG-CAACCCTCAGTCCAGTCTGA-GCTTA
* * * **
18362068 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACCGACGTGCGGGTGCTCAGCTGGA
63 GACAGGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACCGACGTGCGGGGGCTCAGCTCAA
18362133 TGGAGAGGCAGAATGCACAAGCCGAGGATCG
128 TGGAGAGGCAGAATGCACAAGCCGAGGATCG
* * * ** * * ** * *
18362164 GCTCGGTCCCCCGTGTGTGCTGTCGATCCTGCT-GTCGTAACCCTCAGTCTGGTCTGATCTTGGA
1 GCCCGGTCCCCCCTGCGTGCTGTCGATCCAACTACT-GCAACCCTCAGTCCAGTCTGAGCTTAGA
* *
18362228 CTGGGAATGAACTCCGTATGC
65 CAGGGAATGAACTCCCTATGC
18362249 TTAGACTGGG
Statistics
Matches: 199, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
158 70 0.35
159 124 0.62
160 5 0.03
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (158 bp):
GCCCGGTCCCCCCTGCGTGCTGTCGATCCAACTACTGCAACCCTCAGTCCAGTCTGAGCTTAGAC
AGGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACCGACGTGCGGGGGCTCAGCTCAATGG
AGAGGCAGAATGCACAAGCCGAGGATCG
Found at i:18362619 original size:26 final size:26
Alignment explanation
Indices: 18362590--18362642 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18362580 TCGATCCGAT
*
18362590 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18362616 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18362642 C
1 C
18362643 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18362720 original size:368 final size:368
Alignment explanation
Indices: 18362062--18362734 Score: 906
Period size: 368 Copynumber: 1.8 Consensus size: 368
18362052 GTCCAGCTGA
*
18362062 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACCGACGTGCGGGTGCTCA
1 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACCGACGTGCGGGCGCTCA
* ** * * ** **
18362127 GCTGGATGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCGTGTGTGCTGTCGATC
66 GCCGGATGGAGAGGCAGAATGCACAAGCCGAGGATCAACCCGGTCCCCCCTACGTGCTACCGATC
* * * * *
18362192 CTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTG
131 CTGCTGGCATAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
18362257 GGGATGAGCTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCTGTCAGTCGGAG
196 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGAGCTCTGCCAGTCGGAG
* * *
18362322 AGGTCAACCAGAGAGGCATAACGCGCAAGCCAGGGATCAGCCCGACCCCCCTCTGCGTGCTACCA
261 AGGCCAACCAGAGAGACAGAACGCGCAAGCCAGGGATCAGCCCGACCCCCCTCTGCGTGCTACCA
18362387 ATCCTGCTGTCGATCCTGCTGCCACAACCCTCAATCCGGTTGG
326 ATCCTGCTGTCGATCCTGCTGCCACAACCCTCAATCCGGTTGG
* * * *
18362430 GGCTTAGACATGGACTGAACTCCGTATGCCTAATCCAACCCATGAAA-TGAGCGTGCGGGCGCTC
1 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACCGA-CGTGCGGGCGCTC
** *
18362494 AGCCGG-TCGGAGAGGTGGAATGCACAAGCCGGGGATCAACCCGGTCCCCCCTACGTGCTACCGA
65 AGCCGGAT-GGAGAGGCAGAATGCACAAGCCGAGGATCAACCCGGTCCCCCCTACGTGCTACCGA
* *
18362558 TCTTG-TGGCTATAACCCTCAGT-TCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAG
129 TCCTGCTGGC-ATAACCCTCAGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
*
18362621 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGAGCT-TAGCCGGT
192 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGAGCTCT-GCCAGT
* * * * * * *
18362685 CGGAGAGGCCGATCGGAGAGATAGAATGTGCAAGCCAGGGATCGGCCCGA
256 CGGAGAGGCCAACCAGAGAGACAGAACGCGCAAGCCAGGGATCAGCCCGA
18362735 TCCTCCCTGC
Statistics
Matches: 260, Mismatches: 40, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
367 8 0.03
368 252 0.97
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (368 bp):
GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACCGACGTGCGGGCGCTCA
GCCGGATGGAGAGGCAGAATGCACAAGCCGAGGATCAACCCGGTCCCCCCTACGTGCTACCGATC
CTGCTGGCATAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGAGCTCTGCCAGTCGGAG
AGGCCAACCAGAGAGACAGAACGCGCAAGCCAGGGATCAGCCCGACCCCCCTCTGCGTGCTACCA
ATCCTGCTGTCGATCCTGCTGCCACAACCCTCAATCCGGTTGG
Found at i:18363329 original size:26 final size:26
Alignment explanation
Indices: 18363300--18363352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18363290 CCGATTCAAT
18363300 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
18363326 CTTAGACTAGGGGTGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
18363352 C
1 C
18363353 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:18363780 original size:158 final size:156
Alignment explanation
Indices: 18363618--18364010 Score: 369
Period size: 158 Copynumber: 2.5 Consensus size: 156
18363608 CGACCCAATC
* * * *
18363618 CCCCCTACATGCTACTGATCCTGCTACTGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATG
1 CCCCCTACGTGCT-CTGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * * * **
18363683 AACTCCGTATGCGTAAGCCAACCTATGACATGAGCGTGTAGGCGCTCAGCCTACCAGAGAGGCAA
65 AACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGCAGACCAGAGAGGCAA
* * * * *
18363748 AATGCG-TAAGTTGAGGACCGGCCCGGTT
130 AATACGCT-AGTCGAAGACAGGCCC-GAT
* * * * **
18363776 CCCCCTACGTGCTGTCGATCCTACTACCGTAACCCTCGGTTCGGT-TGGGGCTTAGACAT-GGAA
1 CCCCCTACGTGCTCT-GATCCTGCTACCGCAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAA
* * * * **
18363839 TGAACTCCCTGTGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCAGGTCAGAGAGGC
63 TGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGCAGACCAGAGAGGC
* *
18363904 AGAATACGCTAGTCGAAGATAGGCCCGAT
128 AAAATACGCTAGTCGAAGACAGGCCCGAT
* * * * * *
18363933 CCCTCATGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAAT
1 CCC-CCTACGTGCT-CTGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
*
18363998 GAACTCTGTATGC
64 GAACTCCGTATGC
18364011 TTAGACTGGG
Statistics
Matches: 183, Mismatches: 44, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
157 8 0.04
158 172 0.94
159 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (156 bp):
CCCCCTACGTGCTCTGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGCAGACCAGAGAGGCAAA
ATACGCTAGTCGAAGACAGGCCCGAT
Found at i:18364013 original size:26 final size:26
Alignment explanation
Indices: 18363984--18364036 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18363974 CTGGTCTGAT
*
18363984 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCTGTATG
* *
18364010 CTTAGACTGGGGATGAAATTTGTATG
1 CTTAGACTGGGAATGAAATCTGTATG
18364036 C
1 C
18364037 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCTGTATG
Found at i:18364630 original size:11 final size:11
Alignment explanation
Indices: 18364610--18364654 Score: 72
Period size: 11 Copynumber: 4.1 Consensus size: 11
18364600 GGTTAGGCTC
18364610 TCCGACGATGT
1 TCCGACGATGT
*
18364621 TCCAACGATGT
1 TCCGACGATGT
*
18364632 TTCGACGATGT
1 TCCGACGATGT
18364643 TCCGACGATGT
1 TCCGACGATGT
18364654 T
1 T
18364655 ATAACGATGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (11 bp):
TCCGACGATGT
Found at i:18364661 original size:22 final size:22
Alignment explanation
Indices: 18364614--18364663 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
18364604 AGGCTCTCCG
*
18364614 ACGATGTTCCAACGATGTTTCG
1 ACGATGTTCCAACGATGTTTCA
*
18364636 ACGATGTTCCGACGATGTTAT-A
1 ACGATGTTCCAACGATGTT-TCA
18364658 ACGATG
1 ACGATG
18364664 GTCCCCTGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (22 bp):
ACGATGTTCCAACGATGTTTCA
Found at i:18365123 original size:26 final size:25
Alignment explanation
Indices: 18365045--18365116 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 25
18365035 TTGGTCTGAT
*
18365045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCATATG
18365071 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACT-GGGATGAACTCCATATG
18365097 CTTAGACTGAGGATGAACTC
1 CTTAGACTG-GGATGAACTC
18365117 TTTATGCCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 1 0.02
26 39 0.91
27 3 0.07
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCATATG
Found at i:18365318 original size:26 final size:26
Alignment explanation
Indices: 18365280--18365332 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18365270 CCAGTTCGAT
18365280 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18365306 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18365332 C
1 C
18365333 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18365661 original size:159 final size:157
Alignment explanation
Indices: 18365305--18365742 Score: 416
Period size: 158 Copynumber: 2.8 Consensus size: 157
18365295 AACTCCGTAT
* * * *
18365305 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTGAG
* * *
18365370 CCAGCCTGAGAGGCATAATGCACAAGTCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCAGCCAGAGAGGCATAATGCGCAAGTCG-GGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* ** *
18365435 AGCTGCCGTAACCCTCGGTCCGGTCCAA
130 AGCTACCACAACCCTCAGTCCGGTCCAA
* * * * * * * *
18365463 TCTTAGAC-TAGGAATGAATTTCGTAAGCCTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTGA
* * * ** *
18365527 GCCAACCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGAACCCCCTCTGTGTGCTGTCGGT
65 GCCAGCCAGAGAGGCATAATGCGCAAGTC-GGGATCGACCCGATCCCCC-CTACGTGCTGTCGAT
* * ****
18365592 CCCA-TTACCACAACCCTCAGTTCGGTTGGG
128 -CCAGCTACCACAACCCTCAGTCCGGTCCAA
* * *
18365622 GCTTAGACATGGAATGAACTCCCTATGCCTACA-CCAACCCATGAAATGGGCGGACGGGCGCTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTA-AGCCAACCCATGAAATGAGCGTACGGGCGCTGA
* ** * * * *
18365686 ACTGGCCGGAGAGGCA-AATGCGTAAGTCGGGGATCGACCCGATCCCCACTGCGTGCT
65 GCCAGCCAGAGAGGCATAATGCGCAAGTC-GGGATCGACCCGATCCCCCCTACGTGCT
18365743 ACCGATCCTG
Statistics
Matches: 222, Mismatches: 52, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 9 0.04
158 119 0.54
159 89 0.40
160 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTGAG
CCAGCCAGAGAGGCATAATGCGCAAGTCGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCA
GCTACCACAACCCTCAGTCCGGTCCAA
Found at i:18366541 original size:26 final size:26
Alignment explanation
Indices: 18366503--18366555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18366493 GGCTCAAACT
18366503 CTTAGACTAGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
*
18366529 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTACGTATG
18366555 C
1 C
18366556 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:18366900 original size:26 final size:26
Alignment explanation
Indices: 18366871--18366923 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18366861 CCGGTCTGAT
*
18366871 CTTAGAC-TGGGAGTGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18366897 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18366923 C
1 C
18366924 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18367393 original size:159 final size:158
Alignment explanation
Indices: 18366897--18367399 Score: 440
Period size: 159 Copynumber: 3.2 Consensus size: 158
18366887 ACTCCGTATG
* ***
18366897 CTTAGACAT-GGAATGAACTC-CGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAAGCGCTCA
1 CTTAGAC-TGGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
* * * *
18366960 GCC-AGTTGGAGAGGCAGAATGCGCAAGCTGGGGACCGACCCGATCCCTCCCTACGTGCTATCGA
65 GCCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCTCCCTACGTGCTGTCGA
* * * * *
18367024 TCCTGCTACCGTAACTCTCTGTCCGGTTCGAT
128 TCCTGCTACCGCAACCCTCAGT-CGGTCCAAT
* * * * *
18367056 CTTAGACTGGGAATAAACT-TCGTATGCCTAAGTCAACCCATGAAATGAGCGT-TCGGGCACTGA
1 CTTAGACTGGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGT-GGGCGCTCA
* * * * *
18367119 GCCGACCGGAGAGGCATAATGCAC-AGTTCGGGGATCGACCCGATCC-CCTTCTATGTGCTGTCG
65 GCCGATCGGAGAGGCAGAATGCGCAAG-CCGGGGATCGACCCGATCCTCC--CTACGTGCTGTCG
* * * * * *
18367182 GTCCCGCTACCACAACCATCAATC---CAAAT
127 ATCCTGCTACCGCAACCCTCAGTCGGTCCAAT
*
18367211 GGGGCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCG
1 ----CTTAGAC-TGGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCG
* * * *
18367274 CTCAGCCGATCGGAGAGTCAGAATGCGCAAGCCGAGAATCGACTCGATCCTCCCTACGTGCTG-C
61 CTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCTCCCTACGTGCTGTC
*
18367338 TGATCCTGCTACCGCAACCCTCCGTCTGGTCCAAT
126 -GATCCTGCTACCGCAACCCTCAGTC-GGTCCAAT
*
18367373 CTCAGACTGGGAATGAAACTCT-GTATG
1 CTTAGACTGGGAATG-AACTCTCGTATG
18367400 TTTAGACTAG
Statistics
Matches: 268, Mismatches: 52, Indels: 48
0.73 0.14 0.13
Matches are distributed among these distances:
155 2 0.01
157 4 0.01
158 46 0.17
159 203 0.76
160 9 0.03
162 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCTCCCTACGTGCTGTCGATCC
TGCTACCGCAACCCTCAGTCGGTCCAAT
Found at i:18368022 original size:11 final size:11
Alignment explanation
Indices: 18368006--18368038 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
18367996 CGGTTAGGCT
18368006 CTCCGATGATG
1 CTCCGATGATG
18368017 CTCCGATGATG
1 CTCCGATGATG
*
18368028 CTCTGATGATG
1 CTCCGATGATG
18368039 TTACCCAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.30
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:18368146 original size:26 final size:26
Alignment explanation
Indices: 18368108--18368160 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18368098 GGCTCAAATT
18368108 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18368134 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
18368160 C
1 C
18368161 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18368334 original size:26 final size:26
Alignment explanation
Indices: 18368305--18368357 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18368295 CCGGTCTGAT
18368305 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18368331 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18368357 C
1 C
18368358 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18368845 original size:158 final size:157
Alignment explanation
Indices: 18368331--18368837 Score: 502
Period size: 158 Copynumber: 3.2 Consensus size: 157
18368321 ACTCCGTATG
* *
18368331 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * ** * *
18368395 CCGATTGAAGAAGCAGAATGCACAAGCCGGGAATTGGCTTGGTTCCCCCTTGTGTGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGG-TCCCCCCTGCGTGCTGTCGATC
* *
18368460 TTGCTACCGCAACCCTCAGTCCGGTCAGAT
129 CTGCTACCACAACCCTCAGTCCGGTC-GAT
* * * * *
18368490 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAATGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * ** * *
18368555 CAGCCAGAGAGGCATAATGCACAAGTCAGGGATCGGCCCAATCCCCCTCTACGTGCTGTCGGTGC
66 CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCC-CTGCGTGCTGTCGAT-C
* * * **
18368620 C-GCTACCCCAACCCTC-GAACTGG-CTGGG
129 CTGCTACCACAACCCTCAG-TCCGGTC-GAT
* *
18368648 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* ** ** **
18368712 TCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATTATCCCGGTCCCCCCTGCGTGCTACCGATCC
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
18368777 TGCTACCACAACCCTCAGTCCGGTTCGAT
130 TGCTACCACAACCCTCAGTCCGG-TCGAT
*
18368806 CTTTGACTGGGAATGAACTCCGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
18368838 TTAACCCATG
Statistics
Matches: 272, Mismatches: 66, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 29 0.11
158 129 0.47
159 111 0.41
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCAGTCCGGTCGAT
Found at i:18369019 original size:26 final size:26
Alignment explanation
Indices: 18368990--18369042 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18368980 CCGATTCGAT
18368990 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18369016 CTTAGACATGGAGTGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18369042 C
1 C
18369043 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18369544 original size:26 final size:26
Alignment explanation
Indices: 18369493--18369545 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18369483 CCGGTCTGAT
*
18369493 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
18369519 CTTAGACTGGGGATGTACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18369545 C
1 C
18369546 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18369851 original size:355 final size:354
Alignment explanation
Indices: 18369308--18369958 Score: 844
Period size: 355 Copynumber: 1.8 Consensus size: 354
18369298 GCCGGTCTCG
* * *
18369308 CTGCCACAACCCTCGGTCCGACTGGCGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCAGACTGGCGCTCAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
* * ** * ** * *
18369373 CACGAAACGGGCGTGTGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
66 AACAAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCGCAAACCGGGGATCGGCC
* * *
18369438 TGATCCCCTCTGCGTGCTACCGAGCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
131 TGATCCCCTCTGCGTGCTACCGAGCCTACTGTCG-AACCCTCGATCCAGTCCGATCTTACACTGG
** * * *
18369503 GAATGAACTCCGTATGCTTAGAC-TGGGGATGTACT-TCATATGCCTAAGTCAACCCATGAAACG
195 GAATGAACTCCGTATGCTTAGACAT-GAAATGAACTCT-ATATGCATAAGCCAACCCATGAAACG
* *
18369566 AGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCATAATGCGCAAGTCGAGGATCAGCCTGATCCCCC
258 AGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCTGATCCCCC
18369631 TCTGCATGCTGCTGATCCCACTGCCGATCCTA
323 TCTGCATGCTGCTGATCCCACTGCCGATCCTA
* *
18369663 CTGCCACAACCCTCGGTCTAG-CTGGGGCTCAGACATAGAATGAACTCCGTATAG-CTAAGCCAA
1 CTGCCACAACCCTCGGTC-AGACTGGCGCTCAGACATAGAATGAACTCCCTAT-GCCTAAGCCAA
* * * *
18369726 CCAACAAAACAAGCGTGCGGGGGCTCAACCGACCTGAGAGGTAAAATGCGCAAATCGGGGATCGG
64 CCAACAAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCGCAAACCGGGGATCGG
* * * * * * *
18369791 CCTGGTCCCCTCTGCGTGCTATCGATCCTGCTG-CTATGACCCTCGGTTCAGTCCGATCTTACAC
129 CCTGATCCCCTCTGCGTGCTACCGAGCCTACTGTCGA--ACCCTCGATCCAGTCCGATCTTACAC
* *
18369855 TGGGAATGAACTCCGTTTGCTTAGACATGAAATGAACTCTGTATGCATAAGCCAACCCATGAAAC
192 TGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCTATATGCATAAGCCAACCCATGAAAC
* * *
18369920 GAGCATGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGC
257 GAGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGC
18369959 TTAAGCCGAG
Statistics
Matches: 250, Mismatches: 40, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
353 1 0.00
354 1 0.00
355 244 0.98
356 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (354 bp):
CTGCCACAACCCTCGGTCAGACTGGCGCTCAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
AACAAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCGCAAACCGGGGATCGGCC
TGATCCCCTCTGCGTGCTACCGAGCCTACTGTCGAACCCTCGATCCAGTCCGATCTTACACTGGG
AATGAACTCCGTATGCTTAGACATGAAATGAACTCTATATGCATAAGCCAACCCATGAAACGAGC
ATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCTGATCCCCCTCT
GCATGCTGCTGATCCCACTGCCGATCCTA
Found at i:18370559 original size:26 final size:26
Alignment explanation
Indices: 18370530--18370582 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18370520 CCGATCTGAT
18370530 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
18370556 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
18370582 C
1 C
18370583 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:18370687 original size:184 final size:182
Alignment explanation
Indices: 18370371--18370925 Score: 671
Period size: 184 Copynumber: 3.0 Consensus size: 182
18370361 TTCGGCTGGG
* ** * * * * **
18370371 GCTTAGACATGGAATGAACTCCCTATGCCTAAAACAACCCATGAAATGGGCATGCAGGCTTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAG
* * * * * *
18370436 CCAGCCGGAGAAGTAGAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCAATCC
65 CGA-TCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
18370501 TGCTATCGCAACCGTCAGTCCGATCTGATCTTAGACAGGGAATGAACTCCGTAT
129 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
18370555 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-CGCTCAG
*
18370620 TCGATCGGAGAGGCAGAATGCGTAAGTCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCC
65 -CGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCC
* *
18370685 TGCTGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
129 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
18370739 GCTTAGACATGGAATGAACTCCGGTATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTC-
* * * * * * * * * *
18370804 ACCGGTTGGAGAGACAGAATGCATAAGCCGGGGATC-GACCCGGTCCCCCCTACGTGCTATTGAT
63 AGCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCAG-CTCGGTCCCCCCTGCGTGCTGTCGAT
* * * * *
18370868 CCTACTATCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACTCCGTAT
127 CCTGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
18370924 GC
1 GC
18370926 CTAAGTCAAC
Statistics
Matches: 321, Mismatches: 44, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
183 2 0.01
184 178 0.55
185 138 0.43
186 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGC
GATCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Done.