Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 164 of 402
Found at i:18370743 original size:26 final size:27
Alignment explanation
Indices: 18370714--18370767 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
18370704 CCGGTCCAAT
18370714 CTTAGAC-TGGGAATGAACTCC-GTATG
1 CTTAGACAT-GGAATGAACTCCGGTATG
18370740 CTTAGACATGGAATGAACTCCGGTATG
1 CTTAGACATGGAATGAACTCCGGTATG
18370767 C
1 C
18370768 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACATGGAATGAACTCCGGTATG
Found at i:18370903 original size:185 final size:184
Alignment explanation
Indices: 18370450--18370925 Score: 648
Period size: 185 Copynumber: 2.6 Consensus size: 184
18370440 CCGGAGAAGT
** * * *
18370450 AGAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCAATCCTGCTATCGCAACCG
1 AGAATGCATAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCC
* * *
18370515 TCAGTCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTA
66 TCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTA
* ** *
18370580 TGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAGTCGATCGGAGAGGC
131 TGCCTAAGCCAACCAACGAAACGAGCGTACGGACGCTCAACCGATCGGAGAGAC
* * * *
18370634 AGAATGCGTAAGTCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCC
1 AGAATGCATAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCC
*
18370699 TCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGGT
66 TCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCC-GT
* * * * *
18370764 ATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCGCTCAACCGGTTGGAGAGAC
130 ATGCCTAAGCCAACCAACGAAACGAGCGTACGGACGCTCAACCGATCGGAGAGAC
* * * * * *
18370819 AGAATGCATAAGCCGGGGATC-GACCCGGTCCCCCCTACGTGCTATTGATCCTACTATCGTAACC
1 AGAATGCATAAGCCAGGGATCAG-CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACC
* * *
18370883 CTCGGTCTGGTCCGATCTTAGACTGGGAATAAACTCCGTATGC
65 CTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18370926 CTAAGTCAAC
Statistics
Matches: 258, Mismatches: 32, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
184 119 0.46
185 139 0.54
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
AGAATGCATAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCC
TCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCAACGAAACGAGCGTACGGACGCTCAACCGATCGGAGAGAC
Found at i:18371252 original size:26 final size:26
Alignment explanation
Indices: 18371216--18371268 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18371206 CTGGTCCTAT
*
18371216 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
18371242 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
18371268 C
1 C
18371269 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:18372288 original size:159 final size:158
Alignment explanation
Indices: 18371964--18372343 Score: 381
Period size: 159 Copynumber: 2.4 Consensus size: 158
18371954 AACTCCGTAT
* * *
18371964 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGCGTACAGGCGCTAAG
*** * **
18372029 CCGGTCGGAGAGGCAGAATGGGCAAGCTGGGGATCGACCTGGTCCCCCCCTACGTGCTACCGATC
65 CAAATCGAAGAGGCAGAATGGGCAAGCTGGGGATCGACCCAGTCCCCCCCTACGTGCTACCGATC
** *
18372094 CTGCTTTCACAACCCTCAGTCTGGTCAGA
130 CTGCTGCCACAACCCTCAGTCCGGTCAGA
* * * *
18372123 TCTTAGACTAT-GAATGAACTCCGTATGCATAAGTCAACCCACGAAACA-CATGTACGGGCGCTA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGC--GTACAGGCGCTA
* * * * * * *
18372186 AGCAAATCGAAGAGGCATAATGTGCAAGCTGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCGG
63 AGCAAATCGAAGAGGCAGAATGGGCAAGCTGGGGATCGACCCAGTCCCCCCCTACGTGCTACCGA
* * *
18372251 T-CTCGCTGCCACAACCCTCGGTCCGG-CTGGG
128 TCCT-GCTGCCACAACCCTCAGTCCGGTC-AGA
* * * * * *
18372282 GGTTAGACATGGAATGAACACCCTATGCCTAAGCCAAACCATGAAACAGGCGTGCAGGCGCT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA-GCGTACAGGCGCT
18372344 CAACTGGCCA
Statistics
Matches: 177, Mismatches: 36, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.01
158 6 0.03
159 167 0.94
160 2 0.01
161 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGCGTACAGGCGCTAAGC
AAATCGAAGAGGCAGAATGGGCAAGCTGGGGATCGACCCAGTCCCCCCCTACGTGCTACCGATCC
TGCTGCCACAACCCTCAGTCCGGTCAGA
Found at i:18372489 original size:26 final size:26
Alignment explanation
Indices: 18372452--18372502 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18372442 CGATCTGATC
18372452 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
18372478 TTAGACAT-GGAATGAACTCTGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
18372503 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:18372611 original size:12 final size:12
Alignment explanation
Indices: 18372594--18372623 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18372584 CCCCCCTGCG
18372594 TGCTGCTGATCC
1 TGCTGCTGATCC
*
18372606 TGCTGCTGGTCC
1 TGCTGCTGATCC
18372618 TGCTGC
1 TGCTGC
18372624 CGCAACCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.33, G:0.30, T:0.33
Consensus pattern (12 bp):
TGCTGCTGATCC
Found at i:18372662 original size:196 final size:194
Alignment explanation
Indices: 18372282--18372672 Score: 484
Period size: 194 Copynumber: 2.0 Consensus size: 194
18372272 TCCGGCTGGG
* * *
18372282 GGTTAGACATGGAATGAACACCCTATGCCTAAGCCAAACCATGAAACAGGCGTGCAGGCGCTCAA
1 GGTTAGACATGGAATGAACACCCTATGCCTAAGCCAAACCACGAAACAAGCGTACAGGCGCTCAA
* * * * *
18372347 CTGGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCTGCTCGGCCCCCTGCATGCTGCCAATCCTG
66 CCGACCAGAGAGGCAAAACGCGTAAGCCGAGGATCAGCTCGGCCCCCTGCATGCTGCCAATCCTG
* *
18372412 CTGCTCGTCCTGCTATCGCAACCCTCGATTCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
131 CTGCTCGTCCTGCTACCGCAACCCTCGAGTCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* ** *
18372476 GGTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTAC-GAGCGCTCA
1 GGTTAGACATGGAATGAACACCCTATGCCTAAGCCAAACCACGAAACAAGCGTACAG-GCGCTCA
* * * * * **
18372540 ACCGACC-GAAGAGGCAAAACGCGTAAGTCGGGGATGAGCTTGGTCCCCCCTGCGTGCTGCTGAT
65 ACCGACCAG-AGAGGCAAAACGCGTAAGCCGAGGATCAGCTCGG--CCCCCTGCATGCTGCCAAT
* *
18372604 CCTGCTGCTGGTCCTGCTGCCGCAACCCTC-AGTCTGATCTGATCTTAGACAT-GGAATGAACTC
127 CCTGCTGCTCGTCCTGCTACCGCAACCCTCGAGTC-GATCTGATCTTAGAC-TGGGAATGAACTC
*
18372667 TGTAT
190 CGTAT
18372672 G
1 G
18372673 CCTAAGGAAA
Statistics
Matches: 167, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
193 2 0.01
194 87 0.52
195 3 0.02
196 74 0.44
197 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (194 bp):
GGTTAGACATGGAATGAACACCCTATGCCTAAGCCAAACCACGAAACAAGCGTACAGGCGCTCAA
CCGACCAGAGAGGCAAAACGCGTAAGCCGAGGATCAGCTCGGCCCCCTGCATGCTGCCAATCCTG
CTGCTCGTCCTGCTACCGCAACCCTCGAGTCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:18372829 original size:157 final size:157
Alignment explanation
Indices: 18372615--18373147 Score: 530
Period size: 157 Copynumber: 3.4 Consensus size: 157
18372605 CTGCTGCTGG
* * * *
18372615 TCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACATGGAATGAACTCTGTATGCCTAAGG
1 TCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
18372680 AAACCCATGAAACGAGCGTGTGAGTGCTCAGCCAGTCGGAGAGGTAGAATGCGCAAGCCGAGGAT
66 CAACCCACGAAATGAGCGTG-GAGTGCTCAGTCAGACGGAGAGGCAGAATGCGCAAGCCGGGGAT
*
18372745 CGGCCTGATCCCCCCTGCGTACTGTCGA
130 CGGCCTGATCCCCCCTGCGTGCTGTCGA
* *
18372773 TCCTGC-CCCACAACCCTCAGT-TCGGTCTGATCTTAGAC-TGGGGATGAACTCCGTATGCCTAA
1 TCCTGCTGCCACAACCCTCAGTCT-GGTCTGATCTTAGACAT-GGAATGAACTCCGTATGCCTAA
* * * *
18372835 GTCAACCCACGAAATGAGCGTGCAG-GCACTGAGTC-GACTGGAGAGGCATAATGCGCAAGCCGG
64 GCCAACCCACGAAATGAGCGTGGAGTG--CTCAGTCAGAC-GGAGAGGCAGAATGCGCAAGCCGG
* * * *
18372898 GGACCAG-CTCGATCCCTCTCTGCGTGGC-GTCGG
126 GGATCGGCCT-GATCCC-CCCTGCGT-GCTGTCGA
** * * *
18372931 TCCCACTGCCACAACCCTCAGTCTGG-CTGGGGT-TTAGTCATGGAATGAACTCCCTATGCCTAA
1 TCCTGCTGCCACAACCCTCAGTCTGGTCT--GATCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * *
18372994 GCCAACCCACGAAATGGGCATGCGAGTGCTCAGTCAGCCGGAGAGGCAGAATGCACAAGCCGGGG
64 GCCAACCCACGAAATGAGCGTG-GAGTGCTCAGTCAGACGGAGAGGCAGAATGCGCAAGCCGGGG
* *
18373059 ATCGGCC-CAGTCCCCCCTGCGTGCTATCGA
128 ATCGGCCTGA-TCCCCCCTGCGTGCTGTCGA
** * *
18373089 TCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGAC-TGGGAATGAACTCTGTATGC
1 TCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACAT-GGAATGAACTCCGTATGC
18373148 TTAGACTGGG
Statistics
Matches: 302, Mismatches: 51, Indels: 44
0.76 0.13 0.11
Matches are distributed among these distances:
155 1 0.00
156 8 0.03
157 107 0.35
158 76 0.25
159 100 0.33
160 9 0.03
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAATGAGCGTGGAGTGCTCAGTCAGACGGAGAGGCAGAATGCGCAAGCCGGGGATC
GGCCTGATCCCCCCTGCGTGCTGTCGA
Found at i:18373150 original size:26 final size:26
Alignment explanation
Indices: 18373121--18373173 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18373111 CTGGTCTGAT
* *
18373121 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTATATG
*
18373147 CTTAGACTGGGGATAAACTCTATATG
1 CTTAGACTGGGAATAAACTCTATATG
18373173 C
1 C
18373174 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTATATG
Found at i:18373354 original size:26 final size:26
Alignment explanation
Indices: 18373316--18373368 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18373306 CCGGTCTGAT
*
18373316 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
18373342 CTTAGACAT-GGAATAAACTCCTTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
18373368 C
1 C
18373369 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18373717 original size:159 final size:158
Alignment explanation
Indices: 18373511--18373812 Score: 354
Period size: 159 Copynumber: 1.9 Consensus size: 158
18373501 CTTAGATTGG
* * * * * *
18373511 GAATGAACTCCATATGCCTAAGTCAACCAATGAAATAAACGTTCGGGCGCTGAGCCGACTGGAGA
1 GAATGAACTCCATATGCCTAAGTCAACCAACGAAACAAACCTACGGGCGCTCAGCCGACCGGAGA
* * ** * * *
18373576 GACATAATACGCAAG-CTGAGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGGTCCCGTTGCCAC
66 GACATAATACGCAAGCCAG-GGATCGACCCGATCCCCCT-TACGTGCTGTCGATCCCGCTACCAC
*
18373640 AACCCTCGGTCTGGTAGGGGCCTAGACATA
129 AACCCTCGATCTGGTAGGGGCCTAGACATA
* * *** * *
18373670 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCCTACGGGCGCTCAGTCGGCCGGAGA
1 GAATGAACTCCATATGCCTAAGTCAACCAACGAAACAAACCTACGGGCGCTCAGCCGACCGGAGA
* * * *
18373735 GGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTACGTGCTGTCGATCCTGCTACCGCAA
66 GACATAATACGCAAGCCAGGGATCGACCCGATCCCCCTTACGTGCTGTCGATCCCGCTACCACAA
18373800 CCCTCGATCTGGT
131 CCCTCGATCTGGT
18373813 TTGATCTTAG
Statistics
Matches: 117, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 32 0.27
159 83 0.71
160 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GAATGAACTCCATATGCCTAAGTCAACCAACGAAACAAACCTACGGGCGCTCAGCCGACCGGAGA
GACATAATACGCAAGCCAGGGATCGACCCGATCCCCCTTACGTGCTGTCGATCCCGCTACCACAA
CCCTCGATCTGGTAGGGGCCTAGACATA
Found at i:18374715 original size:26 final size:26
Alignment explanation
Indices: 18374686--18374735 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18374676 CGATCTGATC
*
18374686 TTAGACTAGGAATGAACTCTGTATAA
1 TTAGACTAGGAATGAACTCCGTATAA
* *
18374712 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTAGGAATGAACTCCGTAT
18374736 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATAA
Found at i:18375091 original size:26 final size:26
Alignment explanation
Indices: 18375053--18375105 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18375043 CCAGTCTGAT
18375053 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18375079 CTTAGAC-GCGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
18375105 C
1 C
18375106 ATAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18375219 original size:184 final size:184
Alignment explanation
Indices: 18374894--18375255 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 184
18374884 TCCGATTGGG
* * * * * *
18374894 GCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCTACGAGACGAGCGTGCGGGTGCTCAG
1 GCTTAGACACGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * ** * *
18374959 TCGACTGGAGAGGTAGAATGTGCAAGTCAGGGATCGACCCGGTCCCCCCTGTATGTTACCGATCT
66 TCGACTGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTACATGCTACCGATCC
* * * *
18375024 TGCTGCCGTAACCCTCGGTCC-AGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTACCGTAACCCTCGATCCGA-TCTAATCTTAGACAGGGAATGAACTCCGTAT
* * *
18375078 GCTTAGACGCGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACACGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
** * * * **
18375143 TCGGTTGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
66 TCGACTGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTACATGCTACCGATCC
18375208 TGCTACCGTAACCCTCGATCCGATCTAATCTTAGACAGGGAATGAACT
131 TGCTACCGTAACCCTCGATCCGATCTAATCTTAGACAGGGAATGAACT
18375256 AAGTATGCCA
Statistics
Matches: 150, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
184 149 0.99
185 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACACGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
TCGACTGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTACATGCTACCGATCC
TGCTACCGTAACCCTCGATCCGATCTAATCTTAGACAGGGAATGAACTCCGTAT
Found at i:18375572 original size:869 final size:866
Alignment explanation
Indices: 18373296--18376500 Score: 3190
Period size: 869 Copynumber: 3.7 Consensus size: 866
18373286 CTGCTACTGC
*
18373296 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACT
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
* ** * * *
18373361 CCTTATGCCTAAGCCAACCCACGAAACGAGTATACAGGTGCTCAGTCGATCGGAGAGGCAGAATG
66 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGGCAGAATG
* * * * * ** * *
18373426 CACAAGCCGGGTATCGACCCGATCCCCTCCTACATGCTGTCGATCCTGTTGTCGCAACCCTTGGT
131 CGCAAGCAGGG-ACCGACCCGATCCCC-CCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGAT
* * * * * *
18373491 CC-AGTTTGATCTTAGATTGGGAATGAACTCCA-TATGCCTAAGTCAACCAATGAAATAAACGTT
194 CCGA-TCTGATCTTAGACTGGGAATGAACT-CAGTATGCCTAAGTCAACCCACGAAACAAGCGTT
* * * * * * *
18373554 CGGGCGCTGAGCCGACTGGAGAGACATAATACGCAAG-CTGAGGATC-GACCCGGTCCCCCTCTG
257 CGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAG-GGATCAG-CTCGATCCCCCTCTG
** ** * * *
18373617 TGTGCTGTCGGTCCCGTTGCCACAACCCTCGGTCTGG-TAGGGGCCTAGACATAGAATGAACTCC
320 CATGCTACCGATCCCGTTGCCACAACCCTCGGTCTGGCTA-GGGCTTAGACATGGAATGAACTCC
* * * * * * * * *
18373681 GTATGCCTAAGTCAACCCACGAAACGGGCCTACGGGCGCTCAGTCGGCCGGAGAGGCATAATGCG
384 CTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCG
* * * *
18373746 CAAGCCAGGGATCGACC-CGATCCCCCTTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCT
449 CAAGCCAGGGATAG-CCTCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGATCT
* * *
18373810 GGTTTGATCTTAGACTGGAAATGAACTCCGTATGCTTAAACTGGGGATGAACT-CGTATGCCTAA
513 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * * * * *
18373874 ATCAACCCATGAAACGAGC-GTGCGGGTGCTCAACCGGTCAGA-AAGGCCGGCCGGAGAGGTATA
578 GTCAACCCATGAAACGA-CTGTGCGGGCGCTCAGCTGGTCAGAGAA-GTCGGTCGAAGAGGTATA
* * * * * * *
18373937 ATGTACAAGTCGGGGATCAGCTCAGTGCCTCTCTGCGTGCTGCTGGTCTCGCTACCGATCTTGCT
641 ATGTGCAAGTCGGGGATCAGCTCAATCCCTCTCTGCGTGCT-CCGATCCCGCTACCGATCCTGCT
** * *
18374002 GCCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCA
705 GCCACAACCCTTGGTCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * *
18374067 TGAAACAAGAGTGCGGGTGATCAGTCGGTCAGAGAGGTAGAATGCGTAAGTCGAGGATCAACCTG
770 CGAAACGAGCGTGCGGGTGCTCAGTCGCT-GGAGAGGTAGAATGCGCAAGTCGAGGATCGACCTG
* * * ** * * *
18374132 ATGCCCCCTGCGTGCTGTCAATCCTACTGCCAC
834 ATCCCCCCTGCATGTTACCGATCTTACTGCCAT
* * * * * *
18374165 AACCCTTGGTCTGGTCCGATCTTATACTGAGAATGAACTCTATATGCTTAGACATGGAATGAACT
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
* * * ** **
18374230 CCGTATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGTCACAGAGGTTGAATG
66 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGGCAGAATG
* * * ** * * *
18374295 CGTAAGTCCA-AGACCGACCCGAT-CCCTCTGTGTGCTATCGATCCTACTACTGCAACCCTCGAT
131 CGCAAG--CAGGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGAT
* * * **
18374358 CCGAT-TCGATCTTAGATTGGGAATGAACTCAGTATGCCGAAGTCAACCCACAAAATGAGCGTTC
194 CCGATCT-GATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACAAGCGTTC
* * * *
18374422 GAGCACTGAGCCGATCGGAGAGGCATAATGCACAAGCCAGGGATCAGCTCGGTCCCCCTCTGCAT
258 GGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCCCTCTGCAT
* * * * * *
18374487 GCTGCCGATCCTGTTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACTTGGAATAAACTCCCAAT
323 GCTACCGATCCCGTTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* * ** * * * *
18374552 GCCTAAGCCAACCCATGAAACGGACATGTAGGTGCTCAGCCAGTCGAAGAGGTAGAATGCGGAAG
388 GCCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAG
* * * * * * ** * * *
18374617 TCGGGGATTAG-TTCGGTCACCCCTGCGTGCTGCCGATCCTACTGTCGCAACCCTCGGTCCGATC
453 CCAGGGA-TAGCCTCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGATCTGGTC
* * **
18374681 TGATCTTAGACTAGGAATGAACTCTGTATAATTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
517 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * * * *
18374746 ACCCATGAAACGACTGTACGGGCGCTCAGCTAGTCGGAGAAGTCGATCGAAGAGGCATAATGTGC
582 ACCCATGAAACGACTGTGCGGGCGCTCAGCTGGTCAGAGAAGTCGGTCGAAGAGGTATAATGTGC
* * * * ** * *
18374811 AAGTAGGGGATCAGCTCAATCCCCCTCTGCATGCTATCGATCCCATTACCGATCCTGCTACCATA
647 AAGTCGGGGATCAGCTCAATCCCTCTCTGCGTGCT-CCGATCCCGCTACCGATCCTGCTGCCACA
* * * *
18374876 ACCCTTAGTCCGATTGGGGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCTACGAGAC
711 ACCCTTGGTCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
* * *
18374941 GAGCGTGCGGGTGCTCAGTCGACTGGAGAGGTAGAATGTGCAAGTC-AGGGATCGACCCGGTCCC
776 GAGCGTGCGGGTGCTCAGTCG-CTGGAGAGGTAGAATGCGCAAGTCGA-GGATCGACCTGATCCC
* * *
18375005 CCCTGTATGTTACCGATCTTGCTGCCGT
839 CCCTGCATGTTACCGATCTTACTGCCAT
* * **
18375033 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACGCGGAATGAACT
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
* * * * *
18375098 CCGTATGCATAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGGTTGGAGAGGCAGAATG
66 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGGCAGAATG
* * * *
18375163 CGCAAGTTAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGATC
131 CGCAAG-CAGGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATC
* * * * * * *
18375228 CGATCTAATCTTAGACAGGGAATGAACTAAGTATGCCAAAGTTAACCCACGAAACGAGCGTTCAG
195 CGATCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGG
* * * * *
18375293 GCACTGAGCCGACCAGAGAGGCATAATGTGTAAGCCAGGGATCGGCTCGATCCCCTTCTGCATGA
260 GCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCCCTCTGCATG-
* * *
18375358 C-ACCAATCCCATTGCCACAACCCTTGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATG
324 CTACCGATCCCGTTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATG
* **
18375422 CCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCAGCCAGTTGGAGAGGCAGAATGCGCAAGC
389 CCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGC
* * * * ** * * *
18375487 CAGGGATAAGCCT-GGTCCCCCCTACTTACTGTCGATCCTACTGTCGTAAACCTCGATTTGGTCT
454 CAGGGAT-AGCCTCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGATCTGGTCT
* *
18375551 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAA
518 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * *
18375616 CCCATAAAACGAGTGTGTGGGCGCTCAG-TCGGCCAGAGAAGTCGGTCGGAA-AGGTATAATGTG
583 CCCATGAAACGACTGTGCGGGCGCTCAGCT-GGTCAGAGAAGTCGGTC-GAAGAGGTATAATGTG
* * * * * * *
18375679 TAAGTCGAGGATCAG-TCGATCCCTCTCTACGTGCTGCCAATCCTGCTACCGGTCCTGCTGCCAC
646 CAAGTCGGGGATCAGCTCAATCCCTCTCTGCGTGCT-CCGATCCCGCTACCGATCCTGCTGCCAC
*
18375743 AACCCTTGGTCC-AGTTGGGGCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
710 AACCCTTGGTCCGA-TTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * * ***
18375807 ACGAGCGTACGGGTGCTAAGTCGGCCGGAGAGGCAGAATACGCAAGCCGAGAATCGGTTTGATCG
774 ACGAGCGTGCGGGTGCTCAGTC-GCTGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCTGATC-
* * *
18375872 CCCTCTGCATGCTGTCAATCCTGCTGCTGGTCCTACTACCAT
837 CCCCCTGCATG-T-T--A-CC-GAT-C---T--TACTGCCAT
* * *
18375914 AACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTTCATATGCTTAGACATAGAATGAACT
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
* * * * * *
18375979 CCATATGCCTAGGCCAACCCACGAAACGAGTGTACGGGCACTTAGCCGGT-GAGAGAGGCAGAAT
66 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGTCG-GAGAGGCAGAAT
* * * * ** * * *
18376043 GCGTAAGTC-GAGGACCGTCTCGATCCCTCCTGTGTGCTGTCGATCTTGCTACCACAACCTTCGA
130 GCGCAAG-CAG-GGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGA
* * * *
18376107 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCATGAAACAAGCGTGT
193 TCCGATCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACAAGCGT-T
** * * *
18376172 -GGGTGCTGAACC-AGTCGGAGAGGCATAATGCGCAAGCGA-GGATCAGC-CTGATCCCCCTCTG
257 CGGGCACTGAGCCGA-CCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCTC-GATCCCCCTCTG
* * * * * * *
18376233 CGTGCTACCGGTCCCTTTACCACAACCCTCGGT-TCAGATGGGGCTTAGACATGGAATGAACTCC
320 CATGCTACCGATCCCGTTGCCACAACCCTCGGTCT-GGCTAGGGCTTAGACATGGAATGAACTCC
* ** * * * *
18376297 CTATGCCTAAGCGAATGCATGAAATAGG-CGTGCGGGTGTTCAGCCGGCCGGAGAGGCAGAATGC
384 CTATGCCTAAGCCAACCCACGAAA-CGGACGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGC
* ** * * * * * *
18376361 GTAAGCTGGGGATAGGCTCGATCCCCCCTGCGTGTTGCCAATCCTGCTACCGCAACCCTCGGTCT
448 GCAAGCCAGGGATAGCCTCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGATCT
* * *
18376426 GGTCTGATGTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
513 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
18376491 GTCAACCCAT
578 GTCAACCCAT
18376501 CAAATGAGCG
Statistics
Matches: 1900, Mismatches: 388, Indels: 85
0.80 0.16 0.04
Matches are distributed among these distances:
866 3 0.00
867 318 0.17
868 512 0.27
869 558 0.29
870 8 0.00
871 2 0.00
873 1 0.00
874 2 0.00
875 2 0.00
876 1 0.00
879 8 0.00
880 235 0.12
881 249 0.13
882 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (866 bp):
AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGGCAGAATG
CGCAAGCAGGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCC
GATCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGG
CACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCCCTCTGCATGCT
ACCGATCCCGTTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCC
TAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCA
GGGATAGCCTCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGATCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
ATGAAACGACTGTGCGGGCGCTCAGCTGGTCAGAGAAGTCGGTCGAAGAGGTATAATGTGCAAGT
CGGGGATCAGCTCAATCCCTCTCTGCGTGCTCCGATCCCGCTACCGATCCTGCTGCCACAACCCT
TGGTCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
TGCGGGTGCTCAGTCGCTGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCTGATCCCCCCTGCA
TGTTACCGATCTTACTGCCAT
Found at i:18375591 original size:26 final size:26
Alignment explanation
Indices: 18375554--18375606 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18375544 TTGGTCTGAT
*
18375554 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
18375580 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
18375606 C
1 C
18375607 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:18376254 original size:158 final size:158
Alignment explanation
Indices: 18376031--18376460 Score: 370
Period size: 158 Copynumber: 2.7 Consensus size: 158
18376021 TAGCCGGTGA
* ** * * * ** * *
18376031 GAGAGGCAGAATGCGTAAG-TCGAGGACCGTCTCGATCCCTCCTGTGTGCTGTCGATCTTGCTAC
1 GAGAGGCAGAATGCGCAAGCT-GAGGATAGCCTCGATCCCCCCTGCGTGCTACCAATCCTGCTAC
* * *
18376095 CACAACCTTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AATCCAT
65 CACAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAG-CGAATCCAT
* * *
18376159 GAAACAAGCGTGTGGGTGCTGAACCAGTCG
129 GAAACAAGCGTGCGGGTGCTCAACCAGCCG
* ** *
18376189 GAGAGGCATAATGCGCAAGC-GAGGATCAGCCT-GATCCCCCTCTGCGTGCTACCGGTCCCT-TT
1 GAGAGGCAGAATGCGCAAGCTGAGGAT-AGCCTCGATCCCCC-CTGCGTGCTACCAAT-CCTGCT
* * * ** * *
18376251 ACCACAACCCTCGGTTCAGAT-GGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCGAATG
63 ACCACAACCCTC-GATCAGGTCTGATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCGAATC
* * * * *
18376314 CATGAAATAGGCGTGCGGGTGTTCAGCCGGCCG
126 CATGAAACAAGCGTGCGGGTGCTCAACCAGCCG
* * * * *
18376347 GAGAGGCAGAATGCGTAAGCTGGGGATAGGCTCGATCCCCCCTGCGTGTTGCCAATCCTGCTACC
1 GAGAGGCAGAATGCGCAAGCTGAGGATAGCCTCGATCCCCCCTGCGTGCTACCAATCCTGCTACC
* * * * *
18376412 GCAACCCTCGGTCTGGTCTGATGTTAAACTGGGAATGAACTCCATATGC
66 ACAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
18376461 TTAGACTGGG
Statistics
Matches: 212, Mismatches: 48, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
157 22 0.10
158 169 0.80
159 21 0.10
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (158 bp):
GAGAGGCAGAATGCGCAAGCTGAGGATAGCCTCGATCCCCCCTGCGTGCTACCAATCCTGCTACC
ACAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCGAATCCATGA
AACAAGCGTGCGGGTGCTCAACCAGCCG
Found at i:18377195 original size:26 final size:26
Alignment explanation
Indices: 18377157--18377209 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18377147 GGCTCAAACT
18377157 CTTAGACTAGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
*
18377183 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTACGTATG
18377209 C
1 C
18377210 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:18377736 original size:26 final size:26
Alignment explanation
Indices: 18377707--18377759 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18377697 CCGATCCAAT
*
18377707 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACATA-GAATAAACTCCGTATG
*
18377733 CTTAGACATAGAATAAACTCTGTATG
1 CTTAGACATAGAATAAACTCCGTATG
18377759 C
1 C
18377760 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATAGAATAAACTCCGTATG
Found at i:18378097 original size:159 final size:157
Alignment explanation
Indices: 18377891--18378404 Score: 488
Period size: 159 Copynumber: 3.3 Consensus size: 157
18377881 CCAGTTCAAT
* ** *
18377891 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
18377955 CCGACCGGAGAGGTATAATGCGTAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCAGTC
65 CCGGTCGGAGAGGTAGAATGCATAAGTC-AGGATCGGCCCGGTCCCCCTCTGCGTGCTGTC-GTC
* * *
18378020 TCGCAGCCACAACCCTCGGTCTGACTGGGG
128 ACACAGCCACAACCCTCGATCTGACTGGGG
*
18378050 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GACGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
18378114 CGGTCGGAGAGGTAGAATGCACAAGCCAAAGATCGGCTTGGT-CCCC-CTACATGCTGTCGTAAC
66 CGGTCGGAGAGGTAGAATGCATAAGTC-AGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGTCAC
* * * * *** **
18378177 CCTG-CA-TACCGTCCCCCCT-ACAT-ATG
130 ACAGCCACAACCCT-CGATCTGAC-TGGGG
* * * * * *
18378203 CTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18378268 CGGTCGGAGAGCTAGAATGCATAAGTCAGGGATCGACCCGGTCCCCCTTTGCGTGCTGTCGGTCC
66 CGGTCGGAGAGGTAGAATGCATAAGTCA-GGATCGGCCCGGTCCCCCTCTGCGTGCTGTC-GTCA
*
18378333 CACTA-CCACAACCCTCGATCCGACTGGGG
129 CAC-AGCCACAACCCTCGATCTGACTGGGG
** *
18378362 CGCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
18378405 TAATGACATA
Statistics
Matches: 279, Mismatches: 63, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
153 59 0.21
154 45 0.16
155 9 0.03
156 19 0.07
157 8 0.03
158 44 0.16
159 94 0.34
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGTAGAATGCATAAGTCAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGTCACA
CAGCCACAACCCTCGATCTGACTGGGG
Found at i:18378759 original size:26 final size:26
Alignment explanation
Indices: 18378730--18378782 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18378720 CCGGTCCGAT
*
18378730 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATAAACTCCGTATG
18378756 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
18378782 C
1 C
18378783 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:18378954 original size:25 final size:25
Alignment explanation
Indices: 18378917--18378965 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
18378907 GATCTGATCA
*
18378917 TAGACTGGAATGAACTTCGTATGCT
1 TAGACTGGAATGAACTTCATATGCT
* *
18378942 TAGATTGGGATGAACTTCATATGC
1 TAGACTGGAATGAACTTCATATGC
18378966 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (25 bp):
TAGACTGGAATGAACTTCATATGCT
Found at i:18379339 original size:184 final size:183
Alignment explanation
Indices: 18379121--18379489 Score: 508
Period size: 183 Copynumber: 2.0 Consensus size: 183
18379111 TTCGACTGGG
* *
18379121 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
* * *
18379186 CCGATCGGAGAGGCTGAATGCGAAAGTCAGGGA-TCGACCCGATCCCCCCTGCGTGCTGTTAATC
66 CCGATC-GAGAGGCAGAATGCGAAAGCCAGGGACT-GACCCGATCCCCCCTGCATGCTGTTAATC
* * * *
18379250 TTGCTACT-GCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAAGTCCGTAT
129 CTGCT-CTCACAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
** *
18379305 GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
* * * * * * *
18379370 CCGATCGAGAGGCAGAATGCGCAAGCCGGGGACTGGCTCGGTCCCTCCTGCATGCTGTTGATCCT
66 CCGATCGAGAGGCAGAATGCGAAAGCCAGGGACTGACCCGATCCCCCCTGCATGCTGTTAATCCT
* *
18379435 GCTGTCACAACCTTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
131 GCTCTCACAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
18379488 GC
1 GC
18379490 CTAAGTCAAC
Statistics
Matches: 162, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
182 1 0.01
183 94 0.58
184 67 0.41
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
CCGATCGAGAGGCAGAATGCGAAAGCCAGGGACTGACCCGATCCCCCCTGCATGCTGTTAATCCT
GCTCTCACAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:18379808 original size:26 final size:26
Alignment explanation
Indices: 18379779--18379831 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18379769 CCAGTCTGAT
*
18379779 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18379805 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18379831 C
1 C
18379832 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18380526 original size:26 final size:26
Alignment explanation
Indices: 18380488--18380540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18380478 GGCTCAAAAT
18380488 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18380514 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18380540 C
1 C
18380541 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18380869 original size:159 final size:157
Alignment explanation
Indices: 18380513--18380958 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 157
18380503 AACTCCATAT
* * * * *
18380513 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTAAC
** * * * * * *
18380578 CTGGCCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCTGATCCCCCCTGCGTGTTGTCGATCC
66 C-GATCGAAGAGGCAGAATGCATAAGTCGGGGATCAGCCTGATCCCCCCTACGTGCTGCCGATCC
* * **
18380643 TGCTGCCACAAACCTTGGTCTGGTCTAA
130 CGCTCCCACAAACCTCAGTCTGGTCTAA
* * * * *
18380671 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCT-A
** * * *
18380735 ACCGATCGAAGAGGCATTATGCGTAAGTCGGGGATCAGCCTGATCCCCTTCTACGTGCTGCCGGT
64 ACCGATCGAAGAGGCAGAATGCATAAGTCGGGGATCAGCCTGATCCCC-CCTACGTGCTGCCGAT
* *
18380800 CCCGCTCCCACAACCCTCAGTCTGG-CTGAG
128 CCCGCTCCCACAAACCTCAGTCTGGTCT-AA
* *
18380830 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACCG-GTGTGCGGATGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-CGAGTGTGCGGGTGCT-A
* * * * * *
18380894 ATCGATCAGAA-AGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGAT
64 ACCGATC-GAAGAGGCAGAATGCATAAGTCGGGGATCAGCCTGATCCCCCCTACGTGCTGCCGAT
18380958 C
128 C
18380959 TTGCTGTCGT
Statistics
Matches: 234, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 103 0.44
159 125 0.53
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTAAC
CGATCGAAGAGGCAGAATGCATAAGTCGGGGATCAGCCTGATCCCCCCTACGTGCTGCCGATCCC
GCTCCCACAAACCTCAGTCTGGTCTAA
Found at i:18381741 original size:26 final size:26
Alignment explanation
Indices: 18381712--18381761 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18381702 CCGGTCCGAT
18381712 CTTAGAC-TGGGAATGAACTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
18381738 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
18381762 TGGCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:18381913 original size:354 final size:355
Alignment explanation
Indices: 18380962--18381953 Score: 1022
Period size: 355 Copynumber: 2.8 Consensus size: 355
18380952 GTCGATCTTG
* * * *
18380962 CTGTCGTAACCCTCGGTCTGATCCGATCTTAGACTCGAAATGAACTTCGTATGCTTAGA-ATTGG
1 CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACA-TGG
* * * * ** * * *
18381026 GATGAACTCCATATGCCTAAGTCAACTCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAG
65 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAG
* ** * * * *
18381091 GCATAATGCGTAAGCCAGGGATCAGCTCGGTCCCCCTCTGCATGCTGTCGATGTCGCTGTCGATC
130 GCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCC-CTGCGTGCTATCGA--TC-CTG-CAATC
* * ** * *
18381156 TTGTTACCACAACCCTCGGTCCAGCTGGGA-CTTAGACAT-GGAATGAACTCTGTATGCCTAAGC
190 --G-T-----AACCCTCAGTCCA-ATCCGATCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGT
** * * * * *
18381219 CAACCCATGAAATAAGCGTGCGAGCGCTCAGCCAACCGGAGAGGAAGAATGCACAAGCTGGGGAT
245 CAACCCATGAAACGAGCGTACGGGCACTCAGCCAACCGGAGAGGAAGAATACACAAGCTGAGGAT
* *
18381284 CGGCCCGATCCCTCCCTATGTGCTACCGATCCTACTGTTGGTCCTA
310 CAGCCCGATCCCTCCCTACGTGCTACCGATCCTACTGTTGGTCCTA
* * * * * * *
18381330 CAGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAACGAACTTCATATGCTTAGACATGGA
1 CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGA
* * * * * * * * * *
18381395 ATAAACTCTGTATGCCTCAGCCATCCTATGAAACAAGCGTGTGGGCGCTCAACCGATTGGAAGAG
66 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGG-AGAG
* * * * * * *
18381460 GTAGAATGCGCAAGCCGGGGACTGGCCCGGTCCCCGCTGCGTGCTATCGATCCTGCTATCATAAC
130 GCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCAATCGTAAC
** * *
18381525 CCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
195 CCTCAGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
** * * * *
18381590 GCGTACGGGCACTCAGCTGATCGGAGAGGCAGAATACGCAAG-TCGAGGATCAGCCTGATCCC-C
260 GCGTACGGGCACTCAGCCAACCGGAGAGGAAGAATACACAAGCT-GAGGATCAGCCCGATCCCTC
* ** * *
18381653 CCTGCGTGCTGTCGATCTTGCTGTTGGTCCTA
324 CCTACGTGCTACCGATCCTACTGTTGGTCCTA
* * *
18381685 CTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGA
1 CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGA
* * *
18381750 ATGAACTCCGTATGGCTAAGCCAACCCGTGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAGAGG
66 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
*
18381815 CAGAATGCGTAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCAATCGTAACC
131 CAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCAATCGTAACC
* * *
18381880 CTTAGTCCAATCCGATCTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAG
196 CTCAGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
*
18381945 CGTATGGGC
261 CGTACGGGC
18381954 GTTGAGCCGA
Statistics
Matches: 509, Mismatches: 110, Indels: 24
0.79 0.17 0.04
Matches are distributed among these distances:
354 129 0.25
355 134 0.26
356 99 0.19
361 1 0.00
364 4 0.01
365 3 0.01
366 2 0.00
368 105 0.21
369 32 0.06
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (355 bp):
CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
CAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCAATCGTAACC
CTCAGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CGTACGGGCACTCAGCCAACCGGAGAGGAAGAATACACAAGCTGAGGATCAGCCCGATCCCTCCC
TACGTGCTACCGATCCTACTGTTGGTCCTA
Found at i:18381974 original size:354 final size:355
Alignment explanation
Indices: 18380962--18381974 Score: 1037
Period size: 354 Copynumber: 2.8 Consensus size: 355
18380952 GTCGATCTTG
* * * *
18380962 CTGTCGTAACCCTCGGTCTGATCCGATCTTAGACTCGAAATGAACTTCGTATGCTTAGA-ATTGG
1 CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACA-TGG
* * * * ** * * *
18381026 GATGAACTCCATATGCCTAAGTCAACTCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAG
65 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAG
* ** * * * *
18381091 GCATAATGCGTAAGCCAGGGATCAGCTCGGTCCCCCTCTGCATGCTGTCGATGTCGCTGTCGATC
130 GCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCC-CTGCGTGCTATCGA--TC-CTG-CAATC
* * ** * *
18381156 TTGTTACCACAACCCTCGGTCCAGCTGGGA-CTTAGACAT-GGAATGAACTCTGTATGCCTAAGC
190 --G-T-----AACCCTCAGTCCA-ATCCGATCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGT
** * * * * * *
18381219 CAACCCATGAAATAAGCGTGCGAGCGCTCAGCCAACCGGAGAGGAAGAATGCACAAGCTGGGGAT
245 CAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATACACAAGCTGAGGAT
* *
18381284 CGGCCCGATCCCTCCCTATGTGCTACCGATCCTACTGTTGGTCCTA
310 CAGCCCGATCCCTCCCTACGTGCTACCGATCCTACTGTTGGTCCTA
* * * * * * *
18381330 CAGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAACGAACTTCATATGCTTAGACATGGA
1 CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGA
* * * * * * * * * *
18381395 ATAAACTCTGTATGCCTCAGCCATCCTATGAAACAAGCGTGTGGGCGCTCAACCGATTGGAAGAG
66 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGG-AGAG
* * * * * * *
18381460 GTAGAATGCGCAAGCCGGGGACTGGCCCGGTCCCCGCTGCGTGCTATCGATCCTGCTATCATAAC
130 GCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCAATCGTAAC
** * *
18381525 CCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
195 CCTCAGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * * * *
18381590 GCGTACGGGCACTCAGCTGATCGGAGAGGCAGAATACGCAAG-TCGAGGATCAGCCTGATCCC-C
260 GCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATACACAAGCT-GAGGATCAGCCCGATCCCTC
* ** * *
18381653 CCTGCGTGCTGTCGATCTTGCTGTTGGTCCTA
324 CCTACGTGCTACCGATCCTACTGTTGGTCCTA
* * *
18381685 CTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGA
1 CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGA
* * *
18381750 ATGAACTCCGTATGGCTAAGCCAACCCGTGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAGAGG
66 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
*
18381815 CAGAATGCGTAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCAATCGTAACC
131 CAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCAATCGTAACC
* * *
18381880 CTTAGTCCAATCCGATCTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAG
196 CTCAGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * *
18381945 CGTATGGGCGTTGAGCCGACCGAAGAGGCA
261 CGTACGGGCGCTCAGCCGACCGGAGAGGCA
18381975 TAATGTGCAA
Statistics
Matches: 524, Mismatches: 116, Indels: 24
0.79 0.17 0.04
Matches are distributed among these distances:
354 144 0.27
355 134 0.26
356 99 0.19
361 1 0.00
364 4 0.01
365 3 0.01
366 2 0.00
368 105 0.20
369 32 0.06
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (355 bp):
CTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
CAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCAATCGTAACC
CTCAGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATACACAAGCTGAGGATCAGCCCGATCCCTCCC
TACGTGCTACCGATCCTACTGTTGGTCCTA
Found at i:18382217 original size:158 final size:158
Alignment explanation
Indices: 18381738--18382238 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 158
18381728 ACTCCGTACG
* *
18381738 CTTAGACAT-GGAATGAACTCCGTATGGCTAAGCCAACCCGTGAAACGAGCGTACGGGCGCTCAG
1 CTTAGA-ATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * *
18381802 CCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTATCGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTATCGATCC
** ** * *
18381867 TGCAATCGTAACCCTTAGTCCAATCCGAT
130 TGCTGTCGTAACCCTCGGTCTAGTCCGAT
* * * * * * *
18381896 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTATGGGCGTTGAGC
1 CTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
18381961 CGACCGAAGAGGCATAATGTGCAAGACGGGGAACGG-CTCGGTCCCCCTCTGCATGCTATCGGTC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGTCCCCC-CTGCGTGCTATCGATC
* * * * *
18382025 CTGCTGCCATAACCCTCGATCT-GACTGGA-
129 CTGCTGTCGTAACCCTCGGTCTAGTC-CGAT
* * * * * * * *
18382054 GTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGTCACTCAG
1 CTTAGA-ATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* *
18382118 CCGATTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCACCTGCGTGC-AGTCGATC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTA-TCGATC
18382182 CTGCTGTCGTAACCCTCGGTCTAGTCCGAT
129 CTGCTGTCGTAACCCTCGGTCTAGTCCGAT
*
18382212 CTTAGATTAGGAATGAACTCCGTATGC
1 CTTAGAATAGGAATGAACTCCGTATGC
18382239 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 36 0.13
158 198 0.74
159 33 0.12
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTATCGATCCT
GCTGTCGTAACCCTCGGTCTAGTCCGAT
Found at i:18382241 original size:26 final size:26
Alignment explanation
Indices: 18382212--18382290 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
18382202 CTAGTCCGAT
*
18382212 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18382238 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18382264 CTTAGACTA-GAGATGAACTCTGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
18382290 C
1 C
18382291 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18382993 original size:26 final size:26
Alignment explanation
Indices: 18382942--18382994 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18382932 CTGATCTGAT
*
18382942 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
18382968 CTTAGATTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
18382994 C
1 C
18382995 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:18383637 original size:158 final size:158
Alignment explanation
Indices: 18383337--18383838 Score: 523
Period size: 158 Copynumber: 3.2 Consensus size: 158
18383327 ACTATCCTAT
** *
18383337 TCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * **
18383402 TCGACCGGAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGAT-CCCTTCTACATGCTGTCGATC
66 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCTTCTA-GGGCTGTCGATC
18383466 CTGCTGTCGCAACCCTCGGTCTGATCCGA
130 CTGCTGTCGCAACCCTCGGTCTGATCCGA
* * * * *
18383495 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATACGAGCGCTGA
1 TCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * * *
18383559 GCCGATCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCTCGGTCCCCTTCTAGGGCTGCCGGTC
65 GCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCTTCTAGGGCTGTCGATC
* * * ** * * *
18383624 CCGCTGCCACAACCCTCTATCTG-GCTGGG
130 CTGCTGTCGCAACCCTCGGTCTGATC-CGA
* * * * * * * *
18383653 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCATGAAATGGGCATGCGGGTGCTCAA
1 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
*
18383718 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCC-CCT-GCGTGCTGTCGAT
66 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCTTCTAG-G-GCTGTCGAT
*
18383781 CCTGCTGTCGCAACCCTCGGTC-CAGTCCGA
129 CCTGCTGTCGCAACCCTCGGTCTGA-TCCGA
18383811 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 TCTTAGACAT-GGAATGAACTCCGTATGC
18383839 TTAGACTAGG
Statistics
Matches: 272, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 6 0.02
158 255 0.94
159 10 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCTTCTAGGGCTGTCGATCC
TGCTGTCGCAACCCTCGGTCTGATCCGA
Found at i:18383841 original size:26 final size:26
Alignment explanation
Indices: 18383812--18383861 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18383802 CCAGTCCGAT
*
18383812 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
18383838 CTTAGACTAGGGATAAACTCCGTA
1 CTTAGACTAGGGATAAACTCCGTA
18383862 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:18386860 original size:26 final size:26
Alignment explanation
Indices: 18386830--18386882 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18386820 GTTGACTTAG
18386830 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
18386856 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18386882 G
1 G
18386883 AGCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18387335 original size:158 final size:159
Alignment explanation
Indices: 18386856--18387357 Score: 475
Period size: 158 Copynumber: 3.2 Consensus size: 159
18386846 CCTAGTCTAA
* * * *
18386856 GCATACGGAGTTGATTCCCA-GTCTAAGAGCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * ** * ** * * * **
18386920 AGCACGCAGGGTGGATCGGGTTGATCCCCGAATTACACATTCTACCTTTCCGG-TCGGCTGAGTG
65 AGCACACAGGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGATCGGCTGAGCA
* *
18386984 CCCGTACGC-CTGTTTCGTGGGTTGGCTTAG
130 CCCGAACACTC-GTTTCGTGGGTTGGCTTAG
* * * ** * * *
18387014 GCGTAGGGAGTTCATTCCATGTCTAAGCCCCA-ACTGGACCGAGGGTTGTC-GCAGCAAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTG-CGGCAGCAGGATCGA
* * * * *
18387077 CAGCACACAGAGGGGGACCGAACCGATCCCTGGCTTACGCATTATGCCTCTCC-GATCGGCTCAA
64 CAGCACACAG-GGGGGATCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGATCGGCTGAG
* * *
18387141 CACCCGAACGA-TCGTTTCATGGGTTGACTTAA
128 CACCCGAAC-ACTCGTTTCGTGGGTTGGCTTAG
* * * * *
18387173 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
18387237 AGCACACAGGGGGGATCGAGCC-AGTCCCTGGCTTACGCATTCTGCCTCTCCGGAT-GGCTGAGC
65 AGCACACAGGGGGGATCGAGCCGA-TCCCTGGCTTACGCATTCTGCCTCTCCGGATCGGCTGAGC
* * *
18387300 ACCCGCACACTCATTTCGTGGGCTGGCTTAG
129 ACCCGAACACTCGTTTCGTGGGTTGGCTTAG
18387331 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18387358 CATACAGAGT
Statistics
Matches: 270, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 8 0.03
158 144 0.53
159 114 0.42
160 4 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACACAGGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGATCGGCTGAGCAC
CCGAACACTCGTTTCGTGGGTTGGCTTAG
Found at i:18387367 original size:26 final size:26
Alignment explanation
Indices: 18387331--18387383 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18387321 GCTGGCTTAG
*
18387331 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18387357 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18387383 G
1 G
18387384 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18388863 original size:26 final size:26
Alignment explanation
Indices: 18388834--18388886 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18388824 GTTGACTTAG
18388834 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
18388860 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18388886 G
1 G
18388887 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18389187 original size:158 final size:158
Alignment explanation
Indices: 18388998--18389359 Score: 369
Period size: 158 Copynumber: 2.3 Consensus size: 158
18388988 CCCGCACACC
* * * ** *
18388998 CGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAAG
1 CGTTTCATGGGTTGACGTAGGCATACAGAGTTCATTCCATGTCTAAG-ACCAGACCAGACTGAAG
* *
18389062 GTT-ATGGCAGCGGGA-CCGCAGCAAGCAGAGAGGGATCGGACT-GATCCCTGGCTTACGCATTA
65 GTTGA-GGCAGCAGGATCCGCAACAAGCAG-GAGGGATCGG-CTCGATCCCTGGCTTACGCATTA
**
18389124 TGCCAT-TCCGGTCGGCTCAGCGTCC-GCACGCT
127 TGCC-TCTCCGACCGGCTCAGCG-CCAGCACGCT
* * * * *
18389156 CGTTTCGTGGGTTGACGTAGGCATACAGAGTTCATTCCCA-ATCTAAGATCAGATCAGACTGAGG
1 CGTTTCATGGGTTGACGTAGGCATACAGAGTTCATT-CCATGTCTAAGACCAGACCAGACTGAAG
* * * * * * *
18389220 GTTGAGGCAGCAGGATCGGCAACACGTAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGC
65 GTTGAGGCAGCAGGATCCGCAACAAGCAGGAGGGATCGGCTCGATCCCTGGCTTACGCATTATGC
* *
18389285 CTCTCCGACCGGCTGAGCGCCAGCACGTT
130 CTCTCCGACCGGCTCAGCGCCAGCACGCT
* * *
18389314 CGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
1 CGTTTCATGGGTTGACGTAGGCATACAGAGTTCATTCCATGTCTAA
18389360 TCATACTGAG
Statistics
Matches: 167, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
157 10 0.06
158 144 0.86
159 13 0.08
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (158 bp):
CGTTTCATGGGTTGACGTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGACCAGACTGAAGG
TTGAGGCAGCAGGATCCGCAACAAGCAGGAGGGATCGGCTCGATCCCTGGCTTACGCATTATGCC
TCTCCGACCGGCTCAGCGCCAGCACGCT
Found at i:18389371 original size:26 final size:26
Alignment explanation
Indices: 18389335--18389385 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18389325 TTGGCTTAGG
18389335 CATACAGAGTTCATTCC-ATGTCTAAT
1 CATACAGAGTTCATTCCTA-GTCTAAT
*
18389361 CATACTGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATTCCTAGTCTAA
18389386 GATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAT
Found at i:18389909 original size:26 final size:26
Alignment explanation
Indices: 18389873--18389951 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
18389863 GTTGACTTAG
*
18389873 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18389899 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
18389925 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18389951 G
1 G
18389952 ATTGGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18390493 original size:26 final size:26
Alignment explanation
Indices: 18390463--18390515 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18390453 GTTGACTTAG
18390463 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18390489 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18390515 G
1 G
18390516 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18390996 original size:26 final size:26
Alignment explanation
Indices: 18390966--18391021 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18390956 TGGGTTGAAT
18390966 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* * *
18390992 TAAGCATACGGAGTTTATTCCCATTC
1 TAAGCATACGGAGTTCATCCCCAGTC
18391018 TAAG
1 TAAG
18391022 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:18391702 original size:26 final size:26
Alignment explanation
Indices: 18391673--18391725 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18391663 GTTGACTTAG
*
18391673 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
18391699 GCATGCGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18391725 G
1 G
18391726 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18392084 original size:114 final size:114
Alignment explanation
Indices: 18391884--18392113 Score: 417
Period size: 114 Copynumber: 2.0 Consensus size: 114
18391874 TGGTAGCGGG
*
18391884 ATCGATAGCACGCAGAGGGGGTCTGGGCTAATCCTCGGCTTGCGCATTATGCCTCTCCGGTCAGC
1 ATCGATAGCACGCAGAGGGGGTCTGGGCTAATCCTCGACTTGCGCATTATGCCTCTCCGGTCAGC
18391949 TCAGTGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAAAGTTC
66 TCAGTGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAAAGTTC
*
18391998 ATCGATAGCACGTAGAGGGGGTCTGGGCTAATCCTCGACTTGCGCATTATGCCTCTCCGGTC-GA
1 ATCGATAGCACGCAGAGGGGGTCTGGGCTAATCCTCGACTTGCGCATTATGCCTCTCCGGTCAG-
*
18392062 CTCAGTGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTC
65 CTCAGTGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAAAGTTC
18392112 AT
1 AT
18392114 TCCTAGTCTA
Statistics
Matches: 112, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
113 1 0.01
114 111 0.99
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.27
Consensus pattern (114 bp):
ATCGATAGCACGCAGAGGGGGTCTGGGCTAATCCTCGACTTGCGCATTATGCCTCTCCGGTCAGC
TCAGTGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAAAGTTC
Found at i:18392992 original size:166 final size:166
Alignment explanation
Indices: 18392700--18393011 Score: 385
Period size: 166 Copynumber: 1.9 Consensus size: 166
18392690 CGCAAAGGGC
* * * * * * *
18392700 GATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCCCTCCGGTTGGCTGAGCACCCGCATGCTCATT
1 GATCGGGTCGATCCCCAGCTTGCGCATTCTGCCCCTCCAGTCGACTGAGCACCCGCACGCTCATT
* * * * * *
18392765 TCGTGGGTTGGCTTAGGCTTATGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGT
66 TCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGACCAGACCGAACCGAGGGTTAT
18392830 GGCAGCAGAACCAGCAGCAGGATCGACAGCACGAGG
131 GGCAGCAGAACCAGCAGCAGGATCGACAGCACGAGG
* * **
18392866 GATCGGGTTGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGCACCCGCACGCTTGTT
1 GATCGGGTCGATCCCCAGCTTGCGCATTCTGCCCCTCCAGTCGACTGAGCACCCGCACGCTCATT
* * * * *
18392931 TCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCTAATCGAGGGTT
66 TCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA-ATCTAAG-ACCAGACCGAACCGAGGGTT
*
18392994 ATGGCAGCAGGACCAGCA
129 ATGGCAGCAGAACCAGCA
18393012 ATGAGATCAG
Statistics
Matches: 121, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
165 3 0.02
166 116 0.96
167 2 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (166 bp):
GATCGGGTCGATCCCCAGCTTGCGCATTCTGCCCCTCCAGTCGACTGAGCACCCGCACGCTCATT
TCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGACCAGACCGAACCGAGGGTTAT
GGCAGCAGAACCAGCAGCAGGATCGACAGCACGAGG
Found at i:18393154 original size:26 final size:26
Alignment explanation
Indices: 18393118--18393170 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18393108 GTTGACTTAG
18393118 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
18393144 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
18393170 G
1 G
18393171 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:18394396 original size:159 final size:158
Alignment explanation
Indices: 18394006--18394412 Score: 469
Period size: 159 Copynumber: 2.6 Consensus size: 158
18393996 CTGAGCGTCC
* * * *
18394006 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCGGATCAGA
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
* * * * * * * * ** *
18394071 TCGAGGGTTACGGCAGCAGGATCGGCAGCATGTAGGGGGGACCGGATCGATCCTTGACTTGTGCA
66 CCGAGGGTTACGGCAGCAGGATCGACAACACGTAAGGGGGACCGCACCAATCCCCGACTTGGGCA
* * * *
18394136 TTCTGCCTCTCCGGCTGGCTGAGCGCCT
131 TTATGCCTCTCCGGCCGGCTCAGCACCT
* * * **
18394164 GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCG
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCG
* * * *
18394227 GACCTG-GGGTTATGGCAGCGGGATTGACAACACGTAAAGGGGGACCGCACCAATCCCCGGCTTG
64 GACC-GAGGGTTACGGCAGCAGGATCGACAACACGT-AAGGGGGACCGCACCAATCCCCGACTTG
*
18394291 GGTATTATGCCTCTCCGGCCGGCTCAGCACCT
127 GGCATTATGCCTCTCCGGCCGGCTCAGCACCT
*
18394323 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGA
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
* *
18394388 CCGAGGGTTACGACAGTAGGATCGA
66 CCGAGGGTTACGGCAGCAGGATCGA
18394413 TAGCACGGAG
Statistics
Matches: 202, Mismatches: 40, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 74 0.37
159 118 0.58
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
CCGAGGGTTACGGCAGCAGGATCGACAACACGTAAGGGGGACCGCACCAATCCCCGACTTGGGCA
TTATGCCTCTCCGGCCGGCTCAGCACCT
Found at i:18394919 original size:26 final size:26
Alignment explanation
Indices: 18394889--18394941 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18394879 GTTGACTTAG
*
18394889 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18394915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18394941 G
1 G
18394942 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18395416 original size:26 final size:26
Alignment explanation
Indices: 18395387--18395439 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18395377 GTTGGCTTAG
18395387 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
18395413 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18395439 G
1 G
18395440 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18395552 original size:184 final size:184
Alignment explanation
Indices: 18395230--18395782 Score: 576
Period size: 184 Copynumber: 3.0 Consensus size: 184
18395220 GTTGACTTAG
* ** * * ** *
18395230 GCATACGGAGTTCATTCCTA-TGTAAGATTGGACC-AGATCGAAGGTTGTGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGA-ACCGAGGGTTACGACAGCAGGATCGAC
* * * * * * * *
18395293 ACCACGTAAGAGGGATCGAGCCGATCTTCGGCTTGTGCATTCTGCCTCTCTGGTCGACTGAGCAC
65 AACACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
* *
18395358 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
18395413 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCGACA
* * * * * ** *
18395478 GCAGGCGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGTGCC
66 ACACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCC
* * * *
18395543 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGTGTTCATCCCCA-GTCTAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * *
18395597 GCATACGGAGTTCATTCGTAGTCTAAGATCGGATCGAACCGAGGGTTATGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCGACA
* * * * * *
18395662 ATACGCAGGGAGGA-CCATGCCGTTCCTCGACTTACGCATTCTGCCTCT-TCGGTCGGCTGAGCG
66 ACACGCAGGGGGGATCGA-GCCGATCCTCGGCTTGCGCATTCTGCCTCTCT-GGTCGGCTGAGCG
* * * * *
18395725 CCCGCACGCCCATTCCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAA
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
18395781 GC
1 GC
18395783 CCCAGTCGGA
Statistics
Matches: 299, Mismatches: 65, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
183 25 0.08
184 271 0.91
185 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCGACA
ACACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:18395951 original size:158 final size:158
Alignment explanation
Indices: 18395597--18396028 Score: 361
Period size: 158 Copynumber: 2.7 Consensus size: 158
18395587 CCCAGTCTAA
* ** * * * *
18395597 GCATACGGAGTTCATTCGTAGTCTAAGATCGGATCGAACCGAGGGTTATGACAGCAGGATCGATA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGACCGATA
* * * * * *
18395662 ATACGCAGGGAGGACCATGCCGTTCCTCGACTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
66 ACACGCAGGGAGGACCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTCAACGCC
* *
18395727 CGCACGCCCATTCCATGGGTTGGCTTAG
131 CGAACGCCCATTCCATGGGTTGACTTAG
* ** * *
18395755 GCATAGGGAGTTTATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGG
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGACAGCAGGACCGA
* ** ** * *
18395818 TAACACGCAGAGGGGGACTGGGCCGATCCTTTACTTGCGCATT-TGCCTCTCCGGTCGGCTCAAT
64 TAACACGCAG-GGAGGACCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTCAAC
* * * * *
18395882 GCCCGAATGCTCGTTTCGTGGGTTGACTTAG
128 GCCCGAACGCCCATTCCATGGGTTGACTTAG
* * * * * * *
18395913 GCAT-GAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGTTGCGATAGCAAGATCGAC
1 GCATAG-GGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGACCGAT
** * * * * **
18395977 AGTAAGCAAGGG-GGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCG
65 AACACGC-AGGGAGGACCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCG
18396029 ATCGATTGAG
Statistics
Matches: 213, Mismatches: 53, Indels: 16
0.76 0.19 0.06
Matches are distributed among these distances:
157 28 0.13
158 154 0.72
159 31 0.15
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGACCGATA
ACACGCAGGGAGGACCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTCAACGCC
CGAACGCCCATTCCATGGGTTGACTTAG
Found at i:18396085 original size:684 final size:682
Alignment explanation
Indices: 18394853--18396125 Score: 1592
Period size: 684 Copynumber: 1.9 Consensus size: 682
18394843 TTCAGTCGGT
**
18394853 TGAGCGCCCACACGCTCGTTTCATGAGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCACACGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
* ** * *
18394918 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGGTACGGTAGCAGGATTGATAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGGTACGACAGCAGGATCGATAACA
*** * * * *
18394983 CTGGGGGGATTGGGTCGATCCCCTGCTTGCGTATTCTACCTCTTCAACTGGCTGAGCGCCCGTAC
131 CTGGGGGGACCAGGCCGATCCCCTGCTTACGCATTCTACCTCTTCAACTGGCTGAGCGCCCGCAC
* * * * *
18395048 ACCCGTTTCGTGGGTTGGCTTAGACATAGAGAGTTCATTCCATGTCTAAGCCCCAGTTGGATCGA
196 ACCCATTCCATGGGTTGGCTTAGACATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGA
* * * * *
18395113 GGGTTGTGGCAACGGGATCGACAGCACGCAGAGGAGGACCGGGCTAATCCCTGACTTGTGCATTA
261 GGGTTGTGGCAACAGGACCGACAACACGCAGAGGAGGACCGGGCCAATCCCTGACTTGCGCATTA
* *
18395178 TGCCTCTCCGGCCGGCTTAGCACCTGAAAGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTC
326 TGCCTCTCCGGCCGGCTAAGCACCTGAAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * ** * * * * * *
18395243 ATTCCTATGTAAGATTGGACCAGATCGAAGGTTGTGACAGCAGGATCGATACCACGTAAGAGGGA
391 ATTCCCATCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAAGATCGACACCAAGCAAGAGGGA
* ** * * * * *
18395308 TCGAGCCGATCTTCGGCTTGTGCATTCTGCCTCTCTGGTCGACTGAGCACCCGTACGCTCGTTTC
456 CCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGCACCCATACACTCGTTTC
*
18395373 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTA
521 GTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTA
18395438 AGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGGCAGCAGGCGGGGGGGATCGGGCCGATC
586 AGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGGCAGCAGGCGGGGGGGATCGGGCCGATC
18395503 CCCGGCTTGCGCATTCTGCCTCTCTGACCGGC
651 CCCGGCTTGCGCATTCTGCCTCTCTGACCGGC
* * * *
18395535 TGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGTGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCACACGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
** * * * * *
18395600 TACGGAGTTCATTCGTAGTCTAAGATCGGATCGAACCGAGGGTTATGACAGCAGGATCGATAATA
66 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGGTACGACAGCAGGATCGATAACA
* * * * **
18395665 C-GCAGGGAGGACCATGCCGTTCCTC-GACTTACGCATTCTGCCTCTTC-GGTCGGCTGAGCGCC
131 CTG--GGG-GGACCAGGCCGATCCCCTG-CTTACGCATTCTACCTCTTCAACT-GGCTGAGCGCC
* * * *
18395727 CGCACGCCCATTCCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCGG
191 CGCACACCCATTCCATGGGTTGGCTTAGACATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* ** * * * * *
18395792 ACCGAGGGTTGTGGCAGCAGGACCGGTAACACGCAGAGGGGGACTGGGCCGATCCTTTACTTGCG
256 ACCGAGGGTTGTGGCAACAGGACCGACAACACGCAGAGGAGGACCGGGCCAATCCCTGACTTGCG
* *
18395857 CATT-TGCCTCTCCGGTCGGCTCAATGC-CC-GAATGCTCGTTTCGTGGGTTGACTTAGGCATGA
321 CATTATGCCTCTCCGGCCGGCT-AA-GCACCTGAAAGCTCGTTTCGTGGGTTGACTTAGGCAT-A
* * **
18395919 -GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG-AGCGTTGCGATAGCAAGATCGACAGTAA
383 CGGAGTTCATTCCCA-TCTAAGATCAGACCAGACCGAAG-GTTGCGACAGCAAGATCGACACCAA
* * * * * *
18395982 GCAAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGATTGAGCGCCTATA
446 GCAAGAGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGCACCCATA
* *
18396047 CACTCGTTTCGTGGGTTAGCTTTA-GCATACGGAGTTCATTTCATGTCTAAGCATATGGAGTTCA
511 CACTCGTTTCGTGGGTTAGC-TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
18396111 TTCCTAGTCTAAGAT
575 TTCCTAGTCTAAGAT
18396126 TGGACTGGAC
Statistics
Matches: 492, Mismatches: 88, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
681 1 0.00
682 113 0.23
683 65 0.13
684 308 0.63
685 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (682 bp):
TGAGCGCCCACACGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGGTACGACAGCAGGATCGATAACA
CTGGGGGGACCAGGCCGATCCCCTGCTTACGCATTCTACCTCTTCAACTGGCTGAGCGCCCGCAC
ACCCATTCCATGGGTTGGCTTAGACATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGA
GGGTTGTGGCAACAGGACCGACAACACGCAGAGGAGGACCGGGCCAATCCCTGACTTGCGCATTA
TGCCTCTCCGGCCGGCTAAGCACCTGAAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCATCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAAGATCGACACCAAGCAAGAGGGA
CCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGCACCCATACACTCGTTTC
GTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTA
AGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGGCAGCAGGCGGGGGGGATCGGGCCGATC
CCCGGCTTGCGCATTCTGCCTCTCTGACCGGC
Found at i:18396120 original size:26 final size:26
Alignment explanation
Indices: 18396070--18396123 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
18396060 GGTTAGCTTT
*
18396070 AGCATACGGAGTTCATTTCATGTCTA
1 AGCATACGGAGTTCATTCCATGTCTA
*
18396096 AGCATATGGAGTTCATTCC-TAGTCTA
1 AGCATACGGAGTTCATTCCAT-GTCTA
18396122 AG
1 AG
18396124 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCATGTCTA
Found at i:18396597 original size:515 final size:513
Alignment explanation
Indices: 18395697--18396638 Score: 1185
Period size: 515 Copynumber: 1.8 Consensus size: 513
18395687 CTCGACTTAC
* * *
18395697 GCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCATAGG
1 GCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCATACG
* * *
18395762 GAGTTTATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGTAACACGCA
66 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTTGTGGCAGCAGGACCGGTAACACGCA
* *** * * * * **
18395827 GAGGGGGACTGGGCCGATCCTTTACTTGCGCATTTGCCTCTCCGGTCGGCTCAATGCCCGAATGC
131 GAGAGGGACTGGGCCGATCCCCGACTTACCCATTTGCCGCTACGGTCGGCTCAACACCCGAATGC
* *
18395892 TCGTTTCGTGGGTTGACTTAGGCATGAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGC
196 TCGTTTCGTGGGTTGACATAGGCATGAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGC
* *
18395957 GTTGCGATAGCAAGATCGACAGTAAGCAAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGC
261 GTTGCGACAGCAAGATCGACAGCAAGCAAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGC
* * * * * *
18396022 CTCTCCGATCGATTGAGCGCCTATACACTCGTTTCGTGGGTTAGCTTTAGCATACGGAGTTCAT-
326 CTCTCCGATCGACTGAGCACCCACACACTCATTTCATGGGTTAGCTTTAGCATACGGAGTTCATC
** * * *
18396086 TTCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCTAAGGTTGAGGTAG
391 CCCA-GTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATTGGACTGGACCTAAGGTTGAGGTAG
18396151 CAGGACCAGCAGCAAGATCGGCAGCATGTAGGGGGGGAACGGGTCAGTCCCCGGCTTGT
455 CAGGACCAGCAGCAAGATCGGCAGCATGTAGGGGGGGAACGGGTCAGTCCCCGGCTTGT
* ** * * * * *
18396210 GCATTCTACCTCTCCGGTCGGCTGAGCGCTCGTTCGCTCGTTTCGTGGGTTGGCTTATGCATACG
1 GCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCATACG
* * ** *
18396275 GAGTTCATTCCATGTCTAAGCCCCAGTTAGACTGAAGGTTGTGGCAGCAGGATTGGTAACATGCA
66 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTTGTGGCAGCAGGACCGGTAACACGCA
* *
18396340 GAGAGGGA-TCGGGCCGATCCCCGACTTACCCATTATGTCGCTACGGTCGGCTCAGCACCCGAAT
131 GAGAGGGACT-GGGCCGATCCCCGACTTACCCATT-TGCCGCTACGGTCGGCTCAACACCCGAAT
* *
18396404 GCTCGATTTCGTGGGTTGACATAGGCAT-ACGGAGTTCATTCCCAGTCTATGATCAGACCAGACT
194 GCTCG-TTTCGTGGGTTGACATAGGCATGA-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * * * **
18396468 GAGGGTTGTGACAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGGTCCTGGACTTGTGCATT
257 GAGCGTTGCGACAGCAAGATCGACAGCAAGCAAGGGGGACCGGGTCGATCCCCGACTTGTGCATT
* * * * ** * *
18396533 C-GACCTCTCTG-GCTGGCTGAGCACCCGCATGCTCATTTTATGGGTTGGC-TTAGGCATACGGA
322 CTG-CCTCTCCGATC-GACTGAGCACCCACACACTCATTTCATGGGTTAGCTTTA-GCATACGGA
18396595 GTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAG
384 GTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAG
18396639 CATACGGAGT
Statistics
Matches: 356, Mismatches: 65, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
512 1 0.00
513 137 0.38
514 34 0.10
515 182 0.51
516 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (513 bp):
GCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTTGTGGCAGCAGGACCGGTAACACGCA
GAGAGGGACTGGGCCGATCCCCGACTTACCCATTTGCCGCTACGGTCGGCTCAACACCCGAATGC
TCGTTTCGTGGGTTGACATAGGCATGAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGC
GTTGCGACAGCAAGATCGACAGCAAGCAAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGC
CTCTCCGATCGACTGAGCACCCACACACTCATTTCATGGGTTAGCTTTAGCATACGGAGTTCATC
CCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATTGGACTGGACCTAAGGTTGAGGTAGC
AGGACCAGCAGCAAGATCGGCAGCATGTAGGGGGGGAACGGGTCAGTCCCCGGCTTGT
Found at i:18396615 original size:26 final size:26
Alignment explanation
Indices: 18396586--18396664 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
18396576 GTTGGCTTAG
18396586 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18396612 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18396638 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18396664 G
1 G
18396665 ATTGGATCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18396839 original size:26 final size:26
Alignment explanation
Indices: 18396809--18396861 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18396799 GTTGACTTAT
18396809 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
18396835 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18396861 G
1 G
18396862 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18397793 original size:26 final size:26
Alignment explanation
Indices: 18397757--18397835 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
18397747 GTTAACTTAG
*
18397757 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18397783 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18397809 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18397835 G
1 G
18397836 ATCGGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18398080 original size:158 final size:156
Alignment explanation
Indices: 18397845--18398310 Score: 477
Period size: 158 Copynumber: 3.0 Consensus size: 156
18397835 GATCGGACCA
*** * * * * *
18397845 GACCGAGGGTTGCAATAGTAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCG
1 GACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGGCTTGCG
* * * * * *
18397910 CATTCTGCCTCTTTGGCTGGTTGAGTACCCTCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGG
66 CATTCTGCCTCTTCGGCTGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAGG
18397975 AGTTCATTCCATGTCTAAGCCCAACTG
131 AGTTCATTCC-TGTCTAAGCCCAACTG
* * *
18398002 GACCGAGGGTTGTGGCAGTAGGATCGACAGCATGCAGAGGGGGACCGAGTCGATCCCTGGCTTGC
1 GACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAG-GGGGGACCGGGCCGATCCCTGGCTTGC
* * * * * * * ** * * *
18398067 GTATTATGCCTCTTCGGCTAGCTCAGTGCTCGAATGCTCATTTTGTTGGTTGACTTAGGCATACG
65 GCATTCTGCCTCTTCGGCTGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAG
* *
18398132 GAGTTCATTCCTAGTCTAAGATCGAACTG
130 GAGTTCATTCCT-GTCTAAG-CCCAACTG
* * * * * *
18398161 GACTGAGGGTTGCGGCAGCAAGATCGACAGCATGCAGGGGGGACTGGGCCGATCTCTGACTTGCG
1 GACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGGCTTGCG
** * * *
18398226 CATTCTGCCTCCCCAG-TAGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTAGCTTAGGCATACA
66 CATTCTGCCTCTTCGGCT-GGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATA-A
18398290 -GAGTTCATTCCGTGTCTAAGC
129 GGAGTTCATTCC-TGTCTAAGC
18398311 ATACGGAGTT
Statistics
Matches: 245, Mismatches: 58, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 32 0.13
158 173 0.71
159 40 0.16
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (156 bp):
GACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGGCTTGCG
CATTCTGCCTCTTCGGCTGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAGG
AGTTCATTCCTGTCTAAGCCCAACTG
Found at i:18398313 original size:26 final size:26
Alignment explanation
Indices: 18398283--18398335 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18398273 GTTAGCTTAG
**
18398283 GCATACAGAGTTCATTCCGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
18398309 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18398335 G
1 G
18398336 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18399891 original size:26 final size:26
Alignment explanation
Indices: 18399857--18399907 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18399847 TTGGCTTAGG
18399857 CATAAGGAGTTCATTCC-ATGTCTAAC
1 CATAAGGAGTTCATTCCTA-GTCTAAC
*
18399883 CATACGGAGTTCATTCCTAGTCTAA
1 CATAAGGAGTTCATTCCTAGTCTAA
18399908 GATCAAATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCTAGTCTAAC
Found at i:18400178 original size:25 final size:26
Alignment explanation
Indices: 18400128--18400179 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18400118 GTTGACTTAG
*
18400128 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
18400154 GCATACGGAGTTCAT-CCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
18400179 G
1 G
18400180 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:18401065 original size:26 final size:26
Alignment explanation
Indices: 18401028--18401080 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18401018 GTTGGCTTAG
*
18401028 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
18401054 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18401080 G
1 G
18401081 ATCAGTCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18401504 original size:26 final size:26
Alignment explanation
Indices: 18401475--18401525 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18401465 TTGGCTTAGG
*
18401475 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGAAGTTCATTCCCA-GTCTAAC
18401501 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
18401526 GATCGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:18402062 original size:26 final size:26
Alignment explanation
Indices: 18402026--18402076 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18402016 TGGCTTAGGT
**
18402026 ATACGAAGTTCATTCCTTGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
18402052 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
18402077 AGTTTGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:18403042 original size:26 final size:26
Alignment explanation
Indices: 18403011--18403063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18403001 GTTAACTTAG
*
18403011 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
18403037 GCATACAGAGTTCATTCCCTATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
18403063 G
1 G
18403064 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:18403727 original size:169 final size:169
Alignment explanation
Indices: 18403409--18403727 Score: 383
Period size: 169 Copynumber: 1.9 Consensus size: 169
18403399 TTGCGACAAT
* * * * * *
18403409 AGGATCGACAGCACGTAGGGGAGATCGGGCCGGTCCTCGGCTTACGCATTTTGCCTCTCCGACTG
1 AGGATCGACAGCACGTAGGGGAGACCGGGCCGATCCGCGGCTTACACATTCTACCTCTCCGACTG
** * * *
18403474 GCTGAGCGCCTGCACGGTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 GCTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
**** *
18403539 GTTGGACTAGACCGAGGGTTATAGCAGTAGGACCAGCAC
131 CCCAGACCAGACCGAGGGTTATAGCAGTAGGACCAGCAC
* *
18403578 AGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCGCGGCTTGCACATTCTACCTCTCCGA-TC
1 AGGATCGACAGCACGTAGGGGAGACCGGGCCGATCCGCGGCTTACACATTCTACCTCTCCGACT-
* * *
18403642 GGTTGAGCGCCCACACGCTTATTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTA
65 GGCTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTA
* *
18403706 AGCCCCAG-CCGGACTGAGGGTT
129 AG-CCCAGACCAGACCGAGGGTT
18403728 GTGGTAGCAA
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
168 4 0.03
169 119 0.96
170 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (169 bp):
AGGATCGACAGCACGTAGGGGAGACCGGGCCGATCCGCGGCTTACACATTCTACCTCTCCGACTG
GCTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CCCAGACCAGACCGAGGGTTATAGCAGTAGGACCAGCAC
Found at i:18408015 original size:158 final size:156
Alignment explanation
Indices: 18407687--18408122 Score: 395
Period size: 158 Copynumber: 2.8 Consensus size: 156
18407677 CTCCCTCGGA
* * * * *
18407687 CACGCAGGTGTGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCC
1 CACGCAGGGGGGACCGGGTCGATCCCC-GCTTGGGCATTATGCCTCTCCGACCG-CTGAGCGCCC
* * * * *
18407752 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGG
64 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCACCAGCTGG
* *
18407816 ACCAAGGTTGTGGCAGCGAGACCAGCAG
129 ACCAAGGTTGCGGCAGAGAGACCAGCAG
* * * * *
18407844 CACAC-GGAAGGGGACCGGGTTGATCCCCGACTTGGGCATTATGCCTCTTCGGCCAGCTCAGCGC
1 CACGCAGG--GGGGACCGGGTCGATCCCCG-CTTGGGCATTATGCCTCTCCGACC-GCTGAGCGC
* * *
18407908 CCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
62 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCACCAG-C
* * *
18407971 TGGACCGAAGGTTGCGGCA-ATAGGATC-GATAG
126 TGGACC-AAGGTTGCGGCAGAGA-GACCAG-CAG
*** * * *
18408003 CACGCAGGGGGGACCGAACCGATCCCCTGCTTAGACATCTA--CCTCTCCGACTGGCTGAGCGCC
1 CACGCAGGGGGGACCGGGTCGATCCCC-GCTTGGGCAT-TATGCCTCTCCGAC-CGCTGAGCGCC
* * * *
18408066 CGCACACTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGACTAAGCA
63 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCA
18408123 TACGGAGTTC
Statistics
Matches: 224, Mismatches: 40, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
156 5 0.02
157 70 0.31
158 120 0.54
159 27 0.12
160 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.22
Consensus pattern (156 bp):
CACGCAGGGGGGACCGGGTCGATCCCCGCTTGGGCATTATGCCTCTCCGACCGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCACCAGCTGGAC
CAAGGTTGCGGCAGAGAGACCAGCAG
Found at i:18408145 original size:26 final size:26
Alignment explanation
Indices: 18408094--18408146 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18408084 GTTGGCTTAG
*
18408094 GCATACAGAGTTCATTCCATGACTAA
1 GCATACAGAGTTCATTCCACGACTAA
* * *
18408120 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCACGACTAA
18408146 G
1 G
18408147 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGACTAA
Found at i:18408852 original size:158 final size:159
Alignment explanation
Indices: 18408469--18408889 Score: 480
Period size: 159 Copynumber: 2.7 Consensus size: 159
18408459 GATCTTCAAA
* *
18408469 GGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC-CTGTTTCAT
1 GGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTC-GTTTCGT
* * * * *
18408533 GGGTT-AGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGC
65 GGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGGC
*
18408597 AGCGGGACTAGCAGCACACAGAGGGGGACCG
129 AGCAGGACTAGCAGCACACAGAGGGGGACCG
*** * * * * * *
18408628 AACCGATCCCCGACTTGTGCATTATGCCTCT-TCGATCGGCTCAGTGCCCGTACGCTCGTTTCGT
1 GGTCGATCCCCGACTTGCGCATTCTGCCTCTCT-GGTCGGCTGAGCGCCCGCACGCTCGTTTCGT
** *
18408692 GGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGCGG
65 GGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGCGG
* ** *
18408755 CAGCAGGA-TTGACAGCACGTAG-GGGGGATCG
128 CAGCAGGACTAG-CAGCACACAGAGGGGGACCG
* *
18408786 GGTCGATCCCCGACTTGCGCATTCTACCTCTCTGG-CTGGTTGAGCGCCCGCACGCTCGTTTCGT
1 GGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGT
*
18408850 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18408890 ATACAGAGTT
Statistics
Matches: 216, Mismatches: 36, Indels: 20
0.79 0.13 0.07
Matches are distributed among these distances:
157 4 0.02
158 95 0.44
159 112 0.52
160 5 0.02
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.24
Consensus pattern (159 bp):
GGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGGCAG
CAGGACTAGCAGCACACAGAGGGGGACCG
Found at i:18408898 original size:26 final size:26
Alignment explanation
Indices: 18408862--18408914 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18408852 GTTGGCTTAG
*
18408862 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18408888 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18408914 G
1 G
18408915 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18409276 original size:26 final size:26
Alignment explanation
Indices: 18409225--18409278 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
18409215 TGGGTTGACT
*
18409225 TAGGCATACAGAGTTCATCCGTAGTC
1 TAGGCATACAGAGTTCATCCGCAGTC
*
18409251 TAGGCATACGGAGTTCATTCC-CAGTC
1 TAGGCATACAGAGTTCA-TCCGCAGTC
18409277 TA
1 TA
18409279 AGATCGGAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCGCAGTC
Found at i:18409555 original size:159 final size:158
Alignment explanation
Indices: 18409382--18409754 Score: 382
Period size: 159 Copynumber: 2.3 Consensus size: 158
18409372 CGGTTGAGTA
* * * *
18409382 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTATGCCCCAGTC
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA-GCACCAGAC
* * * * * *
18409447 -GGACTGAGGGTTGTGGCAGCAGGATAGGCAG-CATGCAGAGG-GGGATCGGGCTGATCCCCAGC
65 TGGACCGAGAGTTGTGGCAGCAAGATAGACAGACAT--AG-GGTGGGATAGGGCCGATCCCCAGC
* * * * *
18409509 TTGCGCATTATGCCTCTCCCG-TCGGCTCAGCG
127 TTACACATTATACCTCT-CCGACCGACTCAGCG
* * * * *
18409541 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCATTCCCA-ATCTAGGATCGGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATT-CCATGTCTAGCACCAGA
* * *
18409604 CTGGACCGAGAGTTGTGGTAGCAAGATCGACAGAACATAGGGTGGGATAGGGCCGATCCCCGGCT
64 CTGGACCGAGAGTTGTGGCAGCAAGATAGACAG-ACATAGGGTGGGATAGGGCCGATCCCCAGCT
* *
18409669 TACACATTCTACCTCTCCGACCGACTGAGCG
128 TACACATTATACCTCTCCGACCGACTCAGCG
*
18409700 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACA-GAGTTCATTCCATGTCTA
18409755 AGCATACGGA
Statistics
Matches: 176, Mismatches: 28, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
158 13 0.07
159 156 0.89
160 4 0.02
161 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAGCACCAGACT
GGACCGAGAGTTGTGGCAGCAAGATAGACAGACATAGGGTGGGATAGGGCCGATCCCCAGCTTAC
ACATTATACCTCTCCGACCGACTCAGCG
Found at i:18409779 original size:26 final size:26
Alignment explanation
Indices: 18409730--18409782 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18409720 GTTGGCTTAG
*
18409730 GCATAAGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTACATGTCTAA
*
18409756 GCATACGGAGTTCATTTACA-GTCTAA
1 GCATAAGGAGTTCA-TTACATGTCTAA
18409782 G
1 G
18409783 ATCGATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTACATGTCTAA
Found at i:18410140 original size:26 final size:26
Alignment explanation
Indices: 18410110--18410162 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18410100 GTAGACTTAG
18410110 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18410136 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18410162 G
1 G
18410163 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18410340 original size:882 final size:864
Alignment explanation
Indices: 18408472--18410665 Score: 2672
Period size: 882 Copynumber: 2.5 Consensus size: 864
18408462 CTTCAAAGGT
* *
18408472 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCTGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCATGGGT
* * *
18408537 TAGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGG
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGG
* * * *
18408602 GACTA-GCAGCACACAGAGGGGGACCGAACCGATCCCCGACTTGTGCATTATGCCTCTTCGATCG
131 GA-TAGGCAGCACGCAGAGGGGGATCGGACCGATCCCCG-CTTGCGCATTATGCCTCTTCGATCG
*
18408666 GCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
194 GCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
18408731 ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATTGACAGCACGTAGGGGGGATCGGGTCGATCCC
259 ATCGGA-CGGACCGAGGGTTGTGGTAGCAGGATTGACAGCACGTAGGGGGGATAGGGTCGATCCC
* * *
18408796 CGACTTGCGCATTCTACCTCTCTGGCTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
323 CGGCTTGCGCATTCTACCTCTCTGGC-CGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
* * *
18408861 GGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAA
387 GGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCGAA
* * * * *
18408926 CTGAGGGTTGTTGCAGTAGGACCAGCAGCAGGATCGGCAGCACACAGGGGGGACCGGGATGATCC
452 CTGAGGGTTGCTGCAGCAGGACCAGCAACAGGATCGGCAGCACACAGGGGGGACCGAGACGATCC
18408991 CCGACTTGCGCATTCTACCCTCCAGCCAGCTGAGCGCCCGCACGCTCGATCCATGGGTTGGATTA
517 CCGACTTGCGCATTCTACCCTCCAGCCAGCTGAGCGCCCGCACGCTCGATCCATGGGTTGGATTA
*
18409056 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGGCAGCAGGATTGGC
582 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGGCAGCAGGATCGGC
* *
18409121 ATCGGCATCAACAGCACGCAGAGAGGGATCGGGTCGATCCCCGGCTTGTGCATTACGCATCTCCG
647 AGCGGCATCAACAGCACGCAGAGAGGGATCGGGTCGATCCCCAGCTTGTGCATTACGCATCTCCG
* * **
18409186 GTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCGTAGTC
712 GTCGGCTGAGCGCCCGCACACTCATTTCATGGGTAGACTTAGGCATACAGAGTTCATCCCCAGTC
* * * ** * *
18409251 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGAGTGAGGGTTACGGTAGCAGGATCC
777 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCC
*
18409316 GTAGCACGCAGGGGGGACCAGGC
842 GCAGCACGCAGGGGGGACCAGGC
* * * * ** * *
18409339 CCATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGGTTGAGTACCCGCACGCCCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCATGGGT
** * * *
18409404 TGGCTTAGGCATACAGAGTTCATTCCATGTCTATGCCCCAGTCGGACTGAGGGTTGTGGCAGCAG
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGG
* * * *
18409469 GATAGGCAGCATGCAGAGGGGGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCCG-TCG
131 GATAGGCAGCACGCAGAGGGGGATCGGACCGATCCCC-GCTTGCGCATTATGCCTCT-TCGATCG
* * * * *
18409533 GCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAGG
194 GCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
18409598 ATCGGACTGGACCGAGAGTTGTGGTAGCAAGATCGACAGAACATAGGGTGGGATAGGGCCGATCC
259 ATCGGAC-GGACCGAGGGTTGTGGTAGCAGGATTGACAGCACGTAGGG-GGGATAGGGTCGATCC
* * * * * *
18409663 CCGGCTTACACATTCTACCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTT
322 CCGGCTTGCGCATTCTACCTCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* **
18409728 AGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTTACAGTCTAAGATC-GATTGA
386 AGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCGA
* * ** * * *
18409792 ACTGAGGGTTGCTGTAGCAGGACCAGCAACAGGATCGGTAGCATGCAGGCGGGTATCGAGCCGAT
451 ACTGAGGGTTGCTGCAGCAGGACCAGCAACAGGATCGGCAGCACACAGG-GGGGACCGAGACGAT
* * * * * * * *
18409857 CCTCGGCTTGCGCATTCTGCCTCTCC-GACCGGCTGAGCGCCCGTACTCTC-ATTTCGTGGGTTG
515 CCCCGACTTGCGCATTCTACC-CTCCAG-CCAGCTGAGCGCCCGCACGCTCGA-TCCATGGGTTG
* * * *
18409920 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCAGGA
577 GATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGGCAGCAGGA
* *** *
18409985 TCGGCAGCGGGATTGGCAGCACGCAGA-AGGGGATCGGG-CTGATCCCCAGCTTGTGCATTATGC
642 TCGGCAGCGGCATCAACAGCACGCAGAGA-GGGATCGGGTC-GATCCCCAGCTTGTGCATTACGC
* * * * *
18410048 CTCTCCGATCGTCCTCTCCGACCGGCTGAGTGCTCGCACGCTCGTTTCATGGGTAGACTTAGGCA
705 ATCTCCG---G-----T-----CGGCTGAGCGCCCGCACACTCATTTCATGGGTAGACTTAGGCA
* *
18410113 TACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
757 TACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
** * *
18410178 GGGTTGTGGCAGCAAGAT-TGACAGTACGCAGGGGGGACC-GAGC
822 GGGTTACGGCAGCAAGATCCG-CAGCACGCAGGGGGGACCAG-GC
* * *
18410221 CGATCCCAGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCTGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCATGGGT
*
18410286 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGCAGCG
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCG
** * * * * *
18410350 GGACCGGCAGCACGCAAAGGGGGATCGGACCGATCCCTGGCTTGCGCATTATTCCTCTTCGACCA
130 GGATAGGCAGCACGCAGAGGGGGATCGGACCGATCCC-CGCTTGCGCATTATGCCTCTTCGATCG
* * * *
18410415 G-TGCAGTGCACGCACACTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
194 GCT-CAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
18410479 GATCGGACCGACC-AGGGGT-TGCTACCGTAGGATTGACAGCACGCAGGGGCAGA-ACGGGTCGA
258 GATCGGACGGACCGAGGGTTGTGGTA--GCAGGATTGACAGCACGTAGGGG-GGATA-GGGTCGA
* * * * *
18410541 TCCCCGGCTTGCGTATTTTGCCTCTCTGGCCTGCCGAGCGCTCGCACGCTCGTTTCGTGGGTTGG
319 TCCCCGGCTTGCGCATTCTACCTCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* * *
18410606 CTTAGGCATACA-GAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCCAATCTAAGAT
383 CTTAGGCATA-AGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGAT
18410666 TTTGAGCCAT
Statistics
Matches: 1115, Mismatches: 175, Indels: 60
0.83 0.13 0.04
Matches are distributed among these distances:
866 3 0.00
867 305 0.27
868 157 0.14
869 150 0.13
872 1 0.00
877 1 0.00
879 4 0.00
880 6 0.01
881 140 0.13
882 348 0.31
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (864 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCATGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGG
GATAGGCAGCACGCAGAGGGGGATCGGACCGATCCCCGCTTGCGCATTATGCCTCTTCGATCGGC
TCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACGGACCGAGGGTTGTGGTAGCAGGATTGACAGCACGTAGGGGGGATAGGGTCGATCCCCGG
CTTGCGCATTCTACCTCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
TAAGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCGAACTGA
GGGTTGCTGCAGCAGGACCAGCAACAGGATCGGCAGCACACAGGGGGGACCGAGACGATCCCCGA
CTTGCGCATTCTACCCTCCAGCCAGCTGAGCGCCCGCACGCTCGATCCATGGGTTGGATTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGGCAGCAGGATCGGCAGCG
GCATCAACAGCACGCAGAGAGGGATCGGGTCGATCCCCAGCTTGTGCATTACGCATCTCCGGTCG
GCTGAGCGCCCGCACACTCATTTCATGGGTAGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCCGCAG
CACGCAGGGGGGACCAGGC
Found at i:18410457 original size:159 final size:158
Alignment explanation
Indices: 18410136--18410637 Score: 389
Period size: 158 Copynumber: 3.2 Consensus size: 158
18410126 CCCAGTCTAA
* **
18410136 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAAGACCGACA
* * * *
18410201 GTACGCAGGGGGGACCGAGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCACGCAAGGGGGACCGAGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCA
* *
18410266 CGCACGCCTGTTTCATGGGTTGGCTTAG
131 CGCACACCTGTTTCATGGGTTGACTTAG
* * * ** *
18410294 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGACC-AGACCGGACCGAGGGTTGTGGCAGCAAGACCGA
* * * * *
18410357 CAGCACGCAAAGGGGGATCG-GACCGATCCCTGGCTTGCGCATTATTCCTCTTCGACC-AGTGCA
64 CAGCACGC-AAGGGGGACCGAG-CCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCGACTG-A
* ** *
18410420 GTGCACGCACA-CTCGTTTTGTGGGTTGACTTAT
126 GCGCACGCACACCT-GTTTCATGGGTTGACTTAG
* * * * * * **
18410453 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACC-AGGGGTTGCT-ACCGTAGGATTGA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGA-GGGTTG-TGGCAGCAAGACCGA
* * * * * * * * *
18410515 CAGCACGC-AGGGGCAGAACGGGTCGATCCCCGGCTTGCGTATTTTGCCTCTCTGGCCTG-CCGA
64 CAGCACGCAAGGGG--GACCGAGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACC-GACTGA
* * * *
18410578 GCGCTCGCAC-GCTCGTTTCGTGGGTTGGCTTAG
126 GCGCACGCACACCT-GTTTCATGGGTTGACTTAG
*
18410611 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
18410638 CATACGGAGT
Statistics
Matches: 274, Mismatches: 53, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
156 5 0.02
157 7 0.03
158 166 0.61
159 93 0.34
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAAGACCGACA
GCACGCAAGGGGGACCGAGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCA
CGCACACCTGTTTCATGGGTTGACTTAG
Found at i:18411369 original size:26 final size:26
Alignment explanation
Indices: 18411332--18411384 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18411322 GTTCACTTAG
*
18411332 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
18411358 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18411384 G
1 G
18411385 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18412332 original size:26 final size:26
Alignment explanation
Indices: 18412302--18412354 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18412292 GTTGACTTAG
* *
18412302 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
18412328 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
18412354 G
1 G
18412355 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:18412472 original size:184 final size:184
Alignment explanation
Indices: 18412144--18412513 Score: 496
Period size: 184 Copynumber: 2.0 Consensus size: 184
18412134 GTTAACTTAG
* *
18412144 GCATACGGAGTTCATCCCCAGTCTAAGATCAGATCAGACTGAGGGATGCGCCAGTAGGATCGGTA
1 GCATACAGAGTTCATCCCCAATCTAAGATCAGATCAGACTGAGGGATGCGCCAGTAGGATCGGTA
* * *
18412209 GCATACAGGGGGGATCGGGCCAATCCCTAGCTTGCGCATTCTGCCTCTCCGCCCGGCTGAGCGCA
66 GCATACAAGGGGGACCGAGCCAATCCCTAGCTTGCGCATTCTGCCTCTCCGCCCGGCTGAGCGCA
*
18412274 CGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
131 CGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAA
* * *
18412328 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCAGA-TCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACAGAGTTCATCCCCAATCTAAGATCAGATCAGACT-GAGGGATGCGCCAGTAGGATCGGT
* * ** * * *
18412392 AGCATGCAAGGGGGACCGAGCCGATCCCT-GACTTGCGCATTCTGCCTCTCCGGTCGGTTTAGTG
65 AGCATACAAGGGGGACCGAGCCAATCCCTAG-CTTGCGCATTCTGCCTCTCCGCCCGGCTGAGCG
* * * *
18412456 C-CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CAC-GCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
18412512 GC
1 GC
18412514 CCCAGCTGGA
Statistics
Matches: 162, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
183 6 0.04
184 156 0.96
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATCCCCAATCTAAGATCAGATCAGACTGAGGGATGCGCCAGTAGGATCGGTA
GCATACAAGGGGGACCGAGCCAATCCCTAGCTTGCGCATTCTGCCTCTCCGCCCGGCTGAGCGCA
CGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:18412810 original size:158 final size:158
Alignment explanation
Indices: 18412328--18412828 Score: 515
Period size: 159 Copynumber: 3.2 Consensus size: 158
18412318 CCCAGTCTAA
* * * * * * * *
18412328 GCATACAGAGTTCATTCCCA-ATCTAAGATCAGATCAGATCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
18412392 AGCATGCAAGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGTTTAGTGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGC
* *
18412457 CTGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
18412486 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCTAGGGTTGTGGCAACGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * *
18412550 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCTCATTATGCCTCTTCGGCCGGCTCAGCG
65 AGCACGCAG-GGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
* *
18412615 CCCGCACGCTCGTTTCATGGGTTGACTTAT
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * *
18412645 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGACCGGACCGAGGGTTGTAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * * *
18412709 AGCACGCAGGGGGGTCCAAGCCGATCCCCGGTTTGCGCATTTTGCCTCTCCAGTCGGCTGAGCAC
65 AGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGC
* * *
18412774 CCGTACGCTCTTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
18412803 GCGTACGG-GTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18412829 CATACGGAGT
Statistics
Matches: 276, Mismatches: 61, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
157 19 0.07
158 125 0.45
159 132 0.48
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:18412841 original size:26 final size:25
Alignment explanation
Indices: 18412806--18412854 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
18412796 GGCTTAGGCG
18412806 TACGGGTTCATT-CCATGTCTAAGCA
1 TACGGGTTCATTCCCA-GTCTAAGCA
18412831 TACGGAGTTCATTCCCAGTCTAAG
1 TACGG-GTTCATTCCCAGTCTAAG
18412855 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.23
26 14 0.64
27 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (25 bp):
TACGGGTTCATTCCCAGTCTAAGCA
Found at i:18413876 original size:26 final size:26
Alignment explanation
Indices: 18413837--18413892 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
18413827 TGGGTTGGCT
* *
18413837 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTAATTCCCA-GTC
18413863 TAAGCATACAGAGTTAATTCCCAGTC
1 TAAGCATACAGAGTTAATTCCCAGTC
18413889 TAAG
1 TAAG
18413893 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTAATTCCCAGTC
Found at i:18414273 original size:171 final size:171
Alignment explanation
Indices: 18413885--18414274 Score: 391
Period size: 171 Copynumber: 2.3 Consensus size: 171
18413875 GTTAATTCCC
* *
18413885 AGTCTAAGATCAGATCGGACCG-ATGATTGCGATAGCAGGACCAGCAGCAGGATCGACAGCACGT
1 AGTCTAAGATCAGATCGGACCGAAGGA-TGCGATAGCAGGACCGGCAGCAGGATCGACAGCACGT
* * **
18413949 AAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGACTGGGCGCCCGCACG
65 AAGGGGGATCGGGTCGATCCCTGGCTTACGCATTATACCTCTCCGGCCGACTGAACGCCCGCACG
* ** * * *
18414014 CTCGTTTCATGGGTTGGCTTAGTCATATGGAGTTCTTTCCAT
130 CTCATTTCATGGGTTAACTTAGGCATACGGAGTTCTATCCAT
* ** * * * *
18414056 -GCCTAAGCCCCAGCT-GGACCGAGGGTTGTGATAGCAGGACCGGCAGCAGGATCGACAGCACGT
1 AGTCTAAG-ATCAGATCGGACCGAAGGATGCGATAGCAGGACCGGCAGCAGGATCGACAGCACGT
* * * * * *
18414119 AGAGGGGGA-CTGGG-CTGAT-CCTCGGCTTATGCATTATGCCTCTCCGGTCGGCTGAATGCGCG
65 A-AGGGGGATC-GGGTC-GATCCCT-GGCTTACGCATTATACCTCTCCGGCCGACTGAACGCCCG
* *
18414181 CACGCTCATTTCGA-GGGTTAACTTAGGCGTACGGAGTTC-ATCCTT
126 CACGCTCATTTC-ATGGGTTAACTTAGGCATACGGAGTTCTATCCAT
* * *
18414226 AGTCTAAGATCAGATCGGACTGAAGGATGCGATAGTAGGATCGGCAGCA
1 AGTCTAAGATCAGATCGGACCGAAGGATGCGATAGCAGGACCGGCAGCA
18414275 CACAGGGGGG
Statistics
Matches: 173, Mismatches: 37, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
170 61 0.35
171 111 0.64
172 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.22
Consensus pattern (171 bp):
AGTCTAAGATCAGATCGGACCGAAGGATGCGATAGCAGGACCGGCAGCAGGATCGACAGCACGTA
AGGGGGATCGGGTCGATCCCTGGCTTACGCATTATACCTCTCCGGCCGACTGAACGCCCGCACGC
TCATTTCATGGGTTAACTTAGGCATACGGAGTTCTATCCAT
Found at i:18414442 original size:158 final size:157
Alignment explanation
Indices: 18414258--18414550 Score: 381
Period size: 158 Copynumber: 1.9 Consensus size: 157
18414248 AAGGATGCGA
* *
18414258 TAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCG
1 TAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCACTCCG
* * * *
18414323 ACCGGTTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTC
66 ACCGGCTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTC
18414388 TAAGCCCTAACCGGACAGAGGTTGTGG
131 TAAGCCCTAACCGGACAGAGGTTGTGG
** * * *
18414415 TAGTAGGA-CTGGCAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCACTC
1 TAGTAGGATC-GGCAGCACACAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCACTC
** * *** ** *
18414479 CGGTCGGCTGAGCACCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
64 CGACCGGCTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATG
18414544 TCTAAGC
129 TCTAAGC
18414551 ATACGGAGTT
Statistics
Matches: 114, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
156 1 0.01
157 18 0.16
158 95 0.83
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
TAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCACTCCG
ACCGGCTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTC
TAAGCCCTAACCGGACAGAGGTTGTGG
Found at i:18414560 original size:26 final size:25
Alignment explanation
Indices: 18414523--18414574 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18414513 GTTGGCTTAG
18414523 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAT-TCTAA
*
18414549 GCATACGGAGTTCATTCCATTCTAA
1 GCATACGAAGTTCATTCCATTCTAA
18414574 G
1 G
18414575 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCATTCTAA
Found at i:18415270 original size:26 final size:26
Alignment explanation
Indices: 18415233--18415285 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18415223 GTTGACTTAG
*
18415233 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
18415259 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18415285 G
1 G
18415286 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18415927 original size:12 final size:12
Alignment explanation
Indices: 18415910--18415940 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
18415900 AAAGGGTTGT
18415910 GGCAGCAGGACC
1 GGCAGCAGGACC
*
18415922 GGCAGCAGGATC
1 GGCAGCAGGACC
18415934 GGCAGCA
1 GGCAGCA
18415941 CGCAGAGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.42, T:0.03
Consensus pattern (12 bp):
GGCAGCAGGACC
Found at i:18416233 original size:26 final size:26
Alignment explanation
Indices: 18416203--18416255 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18416193 GTTGACTTAG
* *
18416203 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
18416229 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
18416255 G
1 G
18416256 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:18416373 original size:184 final size:184
Alignment explanation
Indices: 18416045--18416414 Score: 496
Period size: 184 Copynumber: 2.0 Consensus size: 184
18416035 GTTAACTTAG
* *
18416045 GCATACGGAGTTCATCCCCAGTCTAAGATCAGATCAGACTGAGGGATGCGCCAGTAGGATCGGTA
1 GCATACAGAGTTCATCCCCAATCTAAGATCAGATCAGACTGAGGGATGCGCCAGTAGGATCGGTA
* * *
18416110 GCATACAGGGGGGATCGGGCCAATCCCTAGCTTGCGCATTCTGCCTCTCCGCCCGGCTGAGCGCA
66 GCATACAAGGGGGACCGAGCCAATCCCTAGCTTGCGCATTCTGCCTCTCCGCCCGGCTGAGCGCA
*
18416175 CGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
131 CGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAA
* * *
18416229 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCAGA-TCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACAGAGTTCATCCCCAATCTAAGATCAGATCAGACT-GAGGGATGCGCCAGTAGGATCGGT
* * ** * * *
18416293 AGCATGCAAGGGGGACCGAGCCGATCCCT-GACTTGCGCATTCTGCCTCTCCGGTCGGTTTAGTG
65 AGCATACAAGGGGGACCGAGCCAATCCCTAG-CTTGCGCATTCTGCCTCTCCGCCCGGCTGAGCG
* * * *
18416357 C-CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CAC-GCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
18416413 GC
1 GC
18416415 CCCAGCTGGA
Statistics
Matches: 162, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
183 6 0.04
184 156 0.96
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATCCCCAATCTAAGATCAGATCAGACTGAGGGATGCGCCAGTAGGATCGGTA
GCATACAAGGGGGACCGAGCCAATCCCTAGCTTGCGCATTCTGCCTCTCCGCCCGGCTGAGCGCA
CGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:18416711 original size:158 final size:158
Alignment explanation
Indices: 18416229--18416729 Score: 524
Period size: 159 Copynumber: 3.2 Consensus size: 158
18416219 CCCAGTCTAA
* * * * * * * *
18416229 GCATACAGAGTTCATTCCCA-ATCTAAGATCAGATCAGATCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * *
18416293 AGCATGCAAGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGTTTAGTGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGC
* *
18416358 CTGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
18416387 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCTAGGGTTGTGGCAACGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * *
18416451 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCTCATTATGCCTCTTCGGCCGGCTCAGCG
65 AGCACGCAG-GGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCG
* *
18416516 CCCGCACGCTCGTTTCATGGGTTGACTTAT
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * *
18416546 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGACCGGACCGAGGGTTGTAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
18416610 AGCACGCAGGGGGGTCCAAGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCAC
65 AGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGC
* * *
18416675 CCGTACGCTCTTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
18416704 GCGTACGG-GTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18416730 CATACGGAGT
Statistics
Matches: 276, Mismatches: 61, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
157 19 0.07
158 125 0.45
159 132 0.48
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:18416742 original size:26 final size:25
Alignment explanation
Indices: 18416707--18416755 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
18416697 GGCTTAGGCG
18416707 TACGGGTTCATT-CCATGTCTAAGCA
1 TACGGGTTCATTCCCA-GTCTAAGCA
18416732 TACGGAGTTCATTCCCAGTCTAAG
1 TACGG-GTTCATTCCCAGTCTAAG
18416756 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.23
26 14 0.64
27 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (25 bp):
TACGGGTTCATTCCCAGTCTAAGCA
Found at i:18417778 original size:26 final size:26
Alignment explanation
Indices: 18417739--18417794 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
18417729 TGGGTTGGCT
*
18417739 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
18417765 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
18417791 TAAG
1 TAAG
18417795 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:18418175 original size:171 final size:171
Alignment explanation
Indices: 18417787--18418293 Score: 399
Period size: 171 Copynumber: 3.0 Consensus size: 171
18417777 GTTCATTCCC
* *
18417787 AGTCTAAGATCAGATCGGACCG-ACGATTGCGATAGCAGGACCAGCAGCAGGATCGACAGCACGT
1 AGTCTAAGATCAGATCGGACCGAAGGA-TGCGATAGCAGGACCGGCAGCAGGATCGACAGCACGT
* * **
18417851 AAGGGGGAACGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGACTGGGCGCCCGCACG
65 AAGGGGGAACGGGCCGATCCCTGGCTTACGCATTATACCTCTCCGGCCGACTGAACGCCCGCACG
* ** * * *
18417916 CTCGTTTCATGGGTTGGCTTAGTCATATGGAGTTCTTTCCAT
130 CTCATTTCATGGGTTAACTTAGGCATACGGAGTTCTATCCAT
* ** * * * *
18417958 -GCCTAAGCCCCAGCT-GGACCGAGGGTTGTGATAGCAGGACCGGCAGCAGGATCGACAGCACGT
1 AGTCTAAG-ATCAGATCGGACCGAAGGATGCGATAGCAGGACCGGCAGCAGGATCGACAGCACGT
* * * * * **
18418021 AGAGGGGG-ACTGGGCTGAT-CCTCGGCTTATGCATTATGCCTCTCCGGTCGGCTGAACGTGCGC
65 A-AGGGGGAAC-GGGCCGATCCCT-GGCTTACGCATTATACCTCTCCGGCCGACTGAACGCCCGC
* *
18418084 ACGCTCATTTCGA-GGGTTAACTTAGGCGTACGGAGTTC-ATCCTT
127 ACGCTCATTTC-ATGGGTTAACTTAGGCATACGGAGTTCTATCCAT
* * *
18418128 AGTCTAAGATCAGATCGGACTGAAGGATGCGATAGTAGGATC-G--GCA-G--C-ACA-CA-G--
1 AGTCTAAGATCAGATCGGACCGAAGGATGCGATAGCAGGACCGGCAGCAGGATCGACAGCACGTA
* * * * * * ** * *
18418182 -GGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCACACGC
66 AGGGGGAACGGGCCGATCCCTGGCTTACGCATTATACCTCTCCGGCCGACTGAACGCCCGCACGC
* ** *
18418246 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTC-ACTCCAT
131 TCATTTCATGGGTTAACTTAGGCATACGGAGTTCTA-TCCAT
18418287 -GTCTAAG
1 AGTCTAAG
18418294 CCCTAACCGG
Statistics
Matches: 267, Mismatches: 57, Indels: 37
0.74 0.16 0.10
Matches are distributed among these distances:
157 1 0.00
158 80 0.30
159 8 0.03
162 1 0.00
163 2 0.01
164 3 0.01
165 1 0.00
167 1 0.00
168 3 0.01
170 62 0.23
171 104 0.39
172 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (171 bp):
AGTCTAAGATCAGATCGGACCGAAGGATGCGATAGCAGGACCGGCAGCAGGATCGACAGCACGTA
AGGGGGAACGGGCCGATCCCTGGCTTACGCATTATACCTCTCCGGCCGACTGAACGCCCGCACGC
TCATTTCATGGGTTAACTTAGGCATACGGAGTTCTATCCAT
Found at i:18418344 original size:158 final size:157
Alignment explanation
Indices: 18418160--18418452 Score: 401
Period size: 158 Copynumber: 1.9 Consensus size: 157
18418150 AAGGATGCGA
*
18418160 TAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCAATCC-CTGGCTTGCGCATTCTGCCTCTCC
1 TAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCAATCCTC-GGCTTGCGCATTCTGCCACTCC
* * *
18418224 GACCGGTTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGT
65 GACCGGTTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATGT
18418289 CTAAGCCCTAACCGGACAGAGGTTATGG
130 CTAAGCCCTAACCGGACAGAGGTTATGG
* * * *
18418317 TAGTAGGA-CTGGCAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTTTGCCACTC
1 TAGTAGGATC-GGCAGCACACAG-GGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTGCCACTC
* * *** ** *
18418381 CGATCGGTTGAGCACCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
64 CGACCGGTTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATG
18418446 TCTAAGC
129 TCTAAGC
18418453 ATACGGAGTT
Statistics
Matches: 117, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
156 1 0.01
157 19 0.16
158 96 0.82
159 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
TAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTGCCACTCCG
ACCGGTTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTC
TAAGCCCTAACCGGACAGAGGTTATGG
Found at i:18418462 original size:26 final size:25
Alignment explanation
Indices: 18418425--18418476 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18418415 GTTGGCTTAG
18418425 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAT-TCTAA
*
18418451 GCATACGGAGTTCATTCCATTCTAA
1 GCATACGAAGTTCATTCCATTCTAA
18418476 G
1 G
18418477 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCATTCTAA
Found at i:18419171 original size:26 final size:26
Alignment explanation
Indices: 18419134--18419186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18419124 GTTGACTTAG
*
18419134 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18419160 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18419186 G
1 G
18419187 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18419647 original size:158 final size:157
Alignment explanation
Indices: 18419157--18419661 Score: 462
Period size: 158 Copynumber: 3.2 Consensus size: 157
18419147 ATCCCCAGTC
* *
18419157 TAAGCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGACAACAGGATC
1 TAAGCATACGAAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATC
** * * * * * * * *
18419221 GGTAGCACGTAGGGGGTATCGGGTCGATCCTCGACTTGCGCATTCTGTC-TCTCCGATCGGCTGA
65 GACAGCACGCAGGGGGGATCGAGTCGATCCCCG-CTTGCGCATTCTGCCTTTTCAG-CCGGCTGA
18419285 GCGCCCGCACGCCCGTTTCGTGGGTTGGCT
128 GCGCCCGCACGCCCGTTTCGTGGGTTGGCT
* * * ** ** * * * *
18419315 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCGAAGGTTGTGGCAACGAGACCG
1 TAAGCATACGAAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATCG
* * * * * * * *
18419380 ACAGCACGCAGAAGGGGACCGAG-CTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTGGCTGA
66 ACAGCACGCAG-GGGGGATCGAGTC-GATCCC-CGCTTGCGCATTCTGCCTTTTCAGCCGGCTGA
* * *
18419444 GCGCCCGCACACTCGTTTCGTGGGTTGACT
128 GCGCCCGCACGCCCGTTTCGTGGGTTGGCT
* ** * * *
18419474 TAGGTGTACAAAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAAGATC
1 TAAGCATACGAAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATC
* * **
18419538 GACAGCACACAGGGGGGATCGTGTCGATCCCCAGCTTGCGCATTCTGCCTTTTCAGCCAACTGAG
65 GACAGCACGCAGGGGGGATCGAGTCGATCCCC-GCTTGCGCATTCTGCCTTTTCAGCCGGCTGAG
* * *
18419603 -GACCCGCATGCGCGTTTCATGGGTTGGCT
129 CG-CCCGCACGCCCGTTTCGTGGGTTGGCT
*
18419632 TAAGCATACGGAGTTCATTCCATGTCTAAG
1 TAAGCATACGAAGTTCATTCCATGTCTAAG
18419662 CATATGAAGT
Statistics
Matches: 267, Mismatches: 70, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
157 7 0.03
158 139 0.52
159 115 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TAAGCATACGAAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATCG
ACAGCACGCAGGGGGGATCGAGTCGATCCCCGCTTGCGCATTCTGCCTTTTCAGCCGGCTGAGCG
CCCGCACGCCCGTTTCGTGGGTTGGCT
Found at i:18419665 original size:26 final size:26
Alignment explanation
Indices: 18419632--18419687 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
18419622 TGGGTTGGCT
*
18419632 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGAAGTTCATTCCCA-GTC
*
18419658 TAAGCATATGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
18419684 TAAG
1 TAAG
18419688 ATCAGATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:18421263 original size:26 final size:26
Alignment explanation
Indices: 18421213--18421265 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18421203 GTTGACTTAG
*
18421213 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
18421239 GCATACGGAGTTGATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
18421265 G
1 G
18421266 ATCAAACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:18421609 original size:184 final size:182
Alignment explanation
Indices: 18421174--18421793 Score: 622
Period size: 184 Copynumber: 3.4 Consensus size: 182
18421164 GCCTTCCTGT
* *
18421174 CGGCTGAGCGCCCGCACGCTC-GTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * *
18421238 AGCATACGGAGTTG-ATT-CTCAATCTAAGATCAAACC-AAATCGAGTGTTACGGCAGTAGGATC
66 AGCATAC-GAG-TGCATTCCT-AGTCTAAGATC-AACCGGACT-GAGGGTTGCGGCAGTAGGATC
* * * ** *
18421300 GGTAGCACGTAAGGGGGGACCGGG-TCGATCCCTGACTTGTGCATTCTGTCTCTCCGAC
126 GGTAGCACG-CAGGGGGGACTGGGCT-GATCCCCGACTTACGCATTCTGCCTCTCCGAC
* * * * * * * * *
18421358 CGGTTGAGCACCCGTATGCTCATTTCATGGGTTAACTTAGGCATATGGAGTTTATCCCCAATCTA
1 CGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
****
18421423 AGCATACAGAGTGCATTCCTAGTCTAAGATCGAACCGGACTGAGGGTTGTAATAGTAGGATCGGT
66 AGCATAC-GAGTGCATTCCTAGTCTAAGATC-AACCGGACTGAGGGTTGCGGCAGTAGGATCGGT
* *
18421488 AGCATGCAGAGGGGACTGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGAC
129 AGCACGCAGGGGGGACTGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGAC
* * * ** *
18421542 CGACTGAGCGCTCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * *
18421607 AGCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGC
66 AGCATACG-AGTGCATTCCTAGTCTAAGATCA-ACCGGACTGAGGGTTGCGGCAGTAGGATCGGT
* * * *
18421672 AGCACGCAGGGGGGACTGGGCCGATTCCCAACTTACGCATTCTGCCTCTCCGAT
129 AGCACGCAGGGGGGACTGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGAC
* * * * * * * * *
18421726 CGGCTGATCGGCCGTATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGGGTTCAT-TCCATGTCT
1 CGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
18421790 AAGC
65 AAGC
18421794 CCAAGTCAGA
Statistics
Matches: 359, Mismatches: 69, Indels: 16
0.81 0.16 0.04
Matches are distributed among these distances:
183 5 0.01
184 261 0.73
185 89 0.25
186 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (182 bp):
CGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGAGTGCATTCCTAGTCTAAGATCAACCGGACTGAGGGTTGCGGCAGTAGGATCGGTAG
CACGCAGGGGGGACTGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGAC
Found at i:18421619 original size:26 final size:26
Alignment explanation
Indices: 18421582--18421634 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18421572 GTTGGCTTAG
*
18421582 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
18421608 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18421634 G
1 G
18421635 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18421989 original size:159 final size:158
Alignment explanation
Indices: 18421608--18422003 Score: 377
Period size: 159 Copynumber: 2.5 Consensus size: 158
18421598 CCCAGTCTAA
* * * **
18421608 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
** * * * * * *
18421673 GCACGCAGGGGGGACTGGGCCGATTCCCAACTTACGCATTCTGCCTCTCCGATCGGCTGATCGGC
66 GCACGCAGGGGGGACCAGGCCGATTCCCAACTTACGCATTATGCCTCTCCGACCGACTCAGCGCC
* * **
18421738 CGTATGCCCATTTCGTGGGTTGGCTTAG
131 CGAACGCCCATTTCGTGGGTTAACTTAG
* * ** * * ** * * *
18421766 GCATAGGGGGTTCATTCC-ATGTCTAAGCCCA-AGTCAGATTGATGGTTGTGGCAGT-GGAACCG
1 GCATACGGAGTTCATTCCTA-GTCTAAGATCAGA-CCGGACCGAGGGTTGCGGCAGTAGG-ATCG
*
18421828 ATAGCACGCAGAGGGGGACCAGGTCGA-TCCCAAGCTTACGCATTATGCCTCTCCGACCGACTCA
63 ATAGCACGCAG-GGGGGACCAGGCCGATTCCCAA-CTTACGCATTATGCCTCTCCGACCGACTCA
***
18421892 GCGCCCGAACGCTTGTTTCGTGGGTTAACTTAG
126 GCGCCCGAACGCCCATTTCGTGGGTTAACTTAG
* * * *
18421925 GTATACGGAGTTCTTTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
* *
18421990 GTACGTAGGGGGGA
66 GCACGCAGGGGGGA
18422004 TCGGGCCGGT
Statistics
Matches: 181, Mismatches: 49, Indels: 16
0.74 0.20 0.07
Matches are distributed among these distances:
157 4 0.02
158 62 0.34
159 111 0.61
160 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
GCACGCAGGGGGGACCAGGCCGATTCCCAACTTACGCATTATGCCTCTCCGACCGACTCAGCGCC
CGAACGCCCATTTCGTGGGTTAACTTAG
Found at i:18422135 original size:26 final size:26
Alignment explanation
Indices: 18422083--18422135 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18422073 GTTGGCCTAG
*
18422083 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
18422109 GCATTCGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
18422135 G
1 G
18422136 ATAGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:18422324 original size:26 final size:26
Alignment explanation
Indices: 18422295--18422344 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18422285 GACGTAGGCA
*
18422295 TACGGAGTT-TTTCCCCAGTCTAAGCG
1 TACGGAGTTCATT-CCCAGTCTAAGCG
18422321 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
18422345 ATCGAACCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:18422683 original size:26 final size:26
Alignment explanation
Indices: 18422633--18422685 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18422623 GTTGGCTTAG
* *
18422633 GCATACGGATTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
18422659 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
18422685 G
1 G
18422686 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:18423775 original size:159 final size:159
Alignment explanation
Indices: 18423477--18424076 Score: 400
Period size: 159 Copynumber: 3.6 Consensus size: 159
18423467 GGATTGGACC
* * * *
18423477 GATCCCCGACTTGCGCATTCTGCCTCTCCGATCGTCTGAGCACCCGCACACCCGTTTTGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACCCGTTTCGTGGGTT
* * * ** ***
18423542 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGTGGG
66 GACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGATCGAGGGTTGCAGCAGCAAG
18423607 ACCGACAGTACGTAGAAAGGGATCGGGCT
131 ACCGACAGTACGTAGAAAGGGATCGGGCT
** *
18423636 GATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGTGCCCGCACACTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACCCGTTTCGTGGGTT
* *
18423701 GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGA-CTGAGGGTTGCAGCAGC
66 GACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGATC-GAGGGTTGCAGCAGC
* * *
18423763 AAGACC-AGCAGTAAGATCGGCAGCACGCAGGGGGGATCGGGCC
128 AAGACCGA-CAGT---A-C-GTAG-A---A--AGGGATCGGGCT
* * * * ** * * * * * * *
18423806 GATCCTCGGCTTACGCATTCTGCCTCTCCGGCCAATTGAGCGCCCACACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACCCGTTTCGTGGGTT
* * * * * * *
18423871 GGCTTAGGCATATGGAGTTCATTTCATGTCTAATC-CCTAGTCAGACCGAGGGTTGTGGTAGCAA
66 GACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC-AGCCAGATCGAGGG-T-T-GCAGC-A
* * * * * **
18423935 GACAGGAAGCGAGATTGGTAGCACGCAGAAGGGGATCAAGCT
126 G-CAAG-ACCGACA---GT---ACGTAGAAAGGGATCGGGCT
* * * * * * *
18423977 GATCCCCGACTTGCGCATTCTGCCTCTCTGGTCGATTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACCCGTTTCGTGGGTT
* * *
18424042 GGCATAGGCATACGGAGTTCATTCTATGTCTAAGC
66 GACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18424077 TGGACCGAGG
Statistics
Matches: 353, Mismatches: 59, Indels: 46
0.77 0.13 0.10
Matches are distributed among these distances:
158 5 0.01
159 110 0.31
160 3 0.01
162 1 0.00
163 1 0.00
164 3 0.01
165 1 0.00
168 1 0.00
169 2 0.01
170 101 0.29
171 100 0.28
172 1 0.00
173 5 0.01
174 2 0.01
175 3 0.01
176 4 0.01
177 5 0.01
178 1 0.00
179 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACCCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGATCGAGGGTTGCAGCAGCAAG
ACCGACAGTACGTAGAAAGGGATCGGGCT
Found at i:18423923 original size:329 final size:334
Alignment explanation
Indices: 18423443--18424065 Score: 765
Period size: 329 Copynumber: 1.9 Consensus size: 334
18423433 AGGGTTGCGA
* * * *
18423443 CAGTAGGATCGGTGCACGCAGGAGGGATTGGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGA
1 CAGTAAGATCGGAGCACGCAGGAGGGATCGGACCGATCCCCGACTTACGCATTCTGCCTCTCCGA
* * * *
18423508 TCGTCTGAGCACCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 CCATCTGAGCACCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * *
18423573 AAGCCCCAGCCAGATCGAGGGTTGT-G-GC-AG-TGGGACCGACA-GT-ACGTAGAAAGGGATCG
131 AAGCCCCAGCCAGACCGAGGGTTGTGGAGCAAGAAGGAACCGACATGTAACGCAGAAAGGGATCA
* **
18423632 GGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGTGCCCGCACACTCGTTTCGTG
196 AGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACTCGTTTCGTG
*
18423697 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGCAG
261 GGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGCAG
18423762 CAAGACCAG
326 CAAGACCAG
* * * *
18423771 CAGTAAGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCG
1 CAGTAAGATCGG-AGCACGCAGGAGGGATCGGACCGATCCCCGACTTACGCATTCTGCCTCTCCG
* * * * * *
18423836 GCCAAT-TGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTTCATGT
65 ACC-ATCTGAGCACCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * *
18423900 CTAATCCCTAGTCAGACCGAGGGTTGTGGTAGCAAGACAGGAAGCGAGATTGGTAGCACGCAGAA
129 CTAAGCCCCAGCCAGACCGAGGGTTGTGG-AGCAAGA-AGGAACCGACA-T-GTA--ACGCAGAA
* * * * * * *
18423965 GGGGATCAAGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGGTCGATTGAGCACCCGCACGCTC
188 AGGGATCAAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACTC
*
18424030 GTTTCGTGGGTTGGCATAGGCATACGGAGTTCATTC
253 GTTTCGTGGGTTGACATAGGCATACGGAGTTCATTC
18424066 TATGTCTAAG
Statistics
Matches: 241, Mismatches: 40, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
328 11 0.05
329 120 0.50
330 2 0.01
332 2 0.01
333 2 0.01
335 7 0.03
338 2 0.01
341 95 0.39
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (334 bp):
CAGTAAGATCGGAGCACGCAGGAGGGATCGGACCGATCCCCGACTTACGCATTCTGCCTCTCCGA
CCATCTGAGCACCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAGCCAGACCGAGGGTTGTGGAGCAAGAAGGAACCGACATGTAACGCAGAAAGGGATCA
AGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACTCGTTTCGTG
GGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGCAG
CAAGACCAG
Found at i:18423924 original size:170 final size:171
Alignment explanation
Indices: 18423620--18424075 Score: 526
Period size: 170 Copynumber: 2.7 Consensus size: 171
18423610 GACAGTACGT
* * * * * *
18423620 AGAAAGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACTCAGTGCCCGCAC
1 AGAAGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGCAC
* * * * *
18423685 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACTG
66 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-TCATGTCTAAGACCAGATCAGACCG
* *
18423749 AGGGTTGCAGCAGCAAGACCA-GCAGTAAGATCGGCAGCACGC
130 AGGGTTGCAGCAGCAAGA-CAGGAAGCAAGATCGGCAGCACGC
* * * * * * * *
18423791 AG-GGGGGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCAATTGAGCGCCCACAC
1 AGAAGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGCAC
* **
18423855 GCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTTCATGTCTAATCCCTAG-TCAGACCG
66 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGACC-AGATCAGACCG
** * * * *
18423919 AGGGTTGTGGTAGCAAGACAGGAAGCGAGATTGGTAGCACGC
130 AGGGTTGCAGCAGCAAGACAGGAAGCAAGATCGGCAGCACGC
** * *
18423961 AGAAGGGGATCAAGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGGTCGATTGAGCACCCGCAC
1 AGAAGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGCAC
*
18424026 GCTCGTTTCGTGGGTTGGCATAGGCATACGGAGTTCA-TTCTATGTCTAAG
66 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTC-ATGTCTAAG
18424076 CTGGACCGAG
Statistics
Matches: 235, Mismatches: 45, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
169 4 0.02
170 134 0.57
171 97 0.41
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (171 bp):
AGAAGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGACCAGATCAGACCGA
GGGTTGCAGCAGCAAGACAGGAAGCAAGATCGGCAGCACGC
Found at i:18424113 original size:12 final size:12
Alignment explanation
Indices: 18424092--18424137 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
18424082 CGAGGGTTAT
*
18424092 GGCAGTAGGACC
1 GGCAGCAGGACC
18424104 GGCAGCAGGACC
1 GGCAGCAGGACC
* *
18424116 GGTAGCAAGACC
1 GGCAGCAGGACC
*
18424128 GACAGCAGGA
1 GGCAGCAGGA
18424138 TCAGCAGCAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.30, C:0.26, G:0.39, T:0.04
Consensus pattern (12 bp):
GGCAGCAGGACC
Found at i:18424146 original size:24 final size:24
Alignment explanation
Indices: 18424100--18424146 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
18424090 ATGGCAGTAG
* * *
18424100 GACCGGCAGCAGGACCGGTAGCAA
1 GACCGACAGCAGGACCAGCAGCAA
*
18424124 GACCGACAGCAGGATCAGCAGCA
1 GACCGACAGCAGGACCAGCAGCA
18424147 CGCAGAAGAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.32, C:0.30, G:0.34, T:0.04
Consensus pattern (24 bp):
GACCGACAGCAGGACCAGCAGCAA
Found at i:18424287 original size:26 final size:26
Alignment explanation
Indices: 18424251--18424303 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18424241 GTTGACTTAG
18424251 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18424277 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18424303 G
1 G
18424304 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18425330 original size:156 final size:157
Alignment explanation
Indices: 18425045--18425346 Score: 399
Period size: 156 Copynumber: 1.9 Consensus size: 157
18425035 AGCAGTAAGA
* * * * * * *
18425045 TCGACAGCACGCAGGCGAGACCGGGCTGATCCCCGGCTTGCGTATTTTGCCTCTCCGACTGACTG
1 TCGACAGCACGCAGGCGAGACCGGGCAGATCCCCAGCTTGCGCAATCTACCTCTCCGACCGACTG
* * *
18425110 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCC
66 AGCGACCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAAGCCCC
* *
18425175 AGCCGGACCGAGGGTTGTGGTAGTGGG
131 AGCCAGACCGAAGGTTGTGGTAGTGGG
* * * * **
18425202 TCGACAGCACGCAGGGGGGACCGGGCAGATCCTCAGCTTGCGCAATCTACCTCTCCTACCGGTTG
1 TCGACAGCACGCAGGCGAGACCGGGCAGATCCCCAGCTTGCGCAATCTACCTCTCCGACCGACTG
* * *
18425267 AGC-ACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCC
66 AGCGACCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAAGCCCC
*
18425331 AGTCAGACCGAAGGTT
131 AGCCAGACCGAAGGTT
18425347 CTGGCAGCAG
Statistics
Matches: 123, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
156 68 0.55
157 55 0.45
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
TCGACAGCACGCAGGCGAGACCGGGCAGATCCCCAGCTTGCGCAATCTACCTCTCCGACCGACTG
AGCGACCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAAGCCCC
AGCCAGACCGAAGGTTGTGGTAGTGGG
Found at i:18425957 original size:159 final size:159
Alignment explanation
Indices: 18425481--18425984 Score: 502
Period size: 160 Copynumber: 3.2 Consensus size: 159
18425471 CCTAGTCTAA
* * * * ** * *
18425481 GCATACGGACTTCATTCCCA-GTCCATGATCAGACCGAACCGAGGGTTGCGACAGCAAGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAT
* * ** * *
18425545 AGCACGCAGG-GGGGATCGGGCCGGTCCCTAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTG
65 AGCACGTAGGAGGGGATCGGGCCAGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGTG
18425609 CCCGCACGC-CTGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTC-GTTTCATGGGTTGGCTTAG
* ** * * * *
18425639 GCATAGGGAGTTCAATT-CATGTCTAAGCCCCA-ACCGGATCGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTC-ATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * * * * *
18425702 CAGCACGTA-AAGGGGGACCGGGCCTA-TCCCCCGGCTTGTACATTATGCCTTTCCGACCGGCTC
64 TAGCACGTAGGA-GGGGATCGGGCC-AGT-CCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTG
* * * ** *
18425765 AATGCCCGAATGCTTATTTCATGGGTTGACTTAG
126 AGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
18425799 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAT
*
18425863 AGCACGTAGGAGGGGATCGGGCCAGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGTG
65 AGCACGTAGGAGGGGATCGGGCCAGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGTG
* *
18425928 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
18425958 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18425985 TATACGAAGT
Statistics
Matches: 269, Mismatches: 63, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
157 2 0.01
158 48 0.18
159 100 0.37
160 116 0.43
161 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
GCACGTAGGAGGGGATCGGGCCAGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGTGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:18425996 original size:26 final size:26
Alignment explanation
Indices: 18425960--18426010 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18425950 TGGCTTAGGC
*
18425960 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGAAGTTCATTCCCA-GTCTAAGT
18425986 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
18426011 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:18426191 original size:26 final size:26
Alignment explanation
Indices: 18426155--18426207 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18426145 GTTGACTTAG
18426155 GCATACGGAGTTCATCCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
18426181 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
18426207 G
1 G
18426208 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:18426279 original size:197 final size:190
Alignment explanation
Indices: 18425799--18426548 Score: 701
Period size: 197 Copynumber: 4.0 Consensus size: 190
18425789 GTTGACTTAG
* * * ** *
18425799 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCAGGATCGAT
1 GCATACGA-AGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * *
18425863 AGCACGTAGGAGGGGATCGGGCC-AGTCCCCGGCTT--GCA--C-A--T-TCTGCCTCTCCGACC
64 AGCACGCA-G-GGGGACCGGGCCGA-TCCCCGGCTTGAGCATTCTACCTCTCTGCCTCTTCGGCC
* * * * * *
18425919 GGTTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
126 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAA
* * *
18425984 GTATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGAATCGACA
1 GCATACGAAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* **
18426049 GCACGCAAGGGGGACCGGGCTGATCAGCGGCTTGAGCATTCTACCTCTCTGGTCGGCCTCTTCGG
65 GCACGC-AGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTC---T--GCCTCTTCGG
*
18426114 CCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCT
124 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCT
18426179 AA
189 AA
* * ** *
18426181 GCATACGGAGTTCATTCCTAGTCTAAGATCGAATTGGACCGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * *
18426246 GCACGCAGGGTGGATCGGGCCGATCCCCGGCTTGCGCA-T-TA------TGCCTCTTCGGCCAGC
65 GCACGCAGGG-GGACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTCTGCCTCTTCGGCCGGC
* * * * * * *
18426303 TCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCATATGGAGTTGATCCCCAGTCTAA
129 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAA
* *
18426365 GCATACGAAGTTCATTCCAGTCTATGATCGGACCGGACTGAGGGTT-CGACAGCAGGATCGACAG
1 GCATACGAAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
* * * * *
18426429 CACGCAGGGGTGACCGGGTCGATCCCCGACTTGTGCATTCT-GC-CTCT--C-C-T--GCCAGCT
66 CACGCAGGGG-GACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTCTGCCTCTTCGGCCGGCT
* * * * * *
18426486 GAGCGACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA-GCGAGTGCATTCCATGTCTAA
130 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATCCCAAGTCTAA
18426547 GC
1 GC
18426549 TCCAGTCAGA
Statistics
Matches: 472, Mismatches: 66, Indels: 57
0.79 0.11 0.10
Matches are distributed among these distances:
181 2 0.00
182 106 0.22
183 24 0.05
184 105 0.22
185 62 0.13
186 7 0.01
188 2 0.00
189 1 0.00
191 1 0.00
192 2 0.00
195 3 0.01
196 7 0.01
197 150 0.32
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (190 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTACCTCTCTGCCTCTTCGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAA
Found at i:18426485 original size:182 final size:184
Alignment explanation
Indices: 18426104--18426548 Score: 574
Period size: 182 Copynumber: 2.4 Consensus size: 184
18426094 TCTCTGGTCG
* * * * *
18426104 GCCTCTTCGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGGCCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* **
18426169 TCCCAAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAATTGGACCGAGGGTTGCGACA
66 TCCCAAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGACA
* * *
18426234 GCAGGATCGGCAGCACGCAGGGTGGATCGGGCCGATCCCCGGCTTGCGCATTAT
131 GCAGGATCGACAGCACGCAGGGTGGACCGGGCCGATCCCCGACTTGCGCATTAT
* * * * *
18426288 GCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCATATGGAGTTGA
1 GCCTCTCCGGCCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * *
18426353 TCCCCAGTCTAAGCATACGAAGTTCATTCC-AGTCTATGATCGGACCGGACTGAGGGTT-CGACA
66 TCCCAAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGACA
* * *
18426416 GCAGGATCGACAGCACGCAGGG-GTGACCGGGTCGATCCCCGACTTGTGCATTCT
131 GCAGGATCGACAGCACGCAGGGTG-GACCGGGCCGATCCCCGACTTGCGCATTAT
* * * * *
18426470 GCCTCTCCTGCCAGCTGAGCGACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA-GCGAGTGC
1 GCCTCTCCGGCCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG-GAGTTC
* *
18426534 ATTCCATGTCTAAGC
65 ATCCCAAGTCTAAGC
18426549 TCCAGTCAGA
Statistics
Matches: 226, Mismatches: 33, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
181 2 0.01
182 116 0.51
183 23 0.10
184 85 0.38
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (184 bp):
GCCTCTCCGGCCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TCCCAAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGACA
GCAGGATCGACAGCACGCAGGGTGGACCGGGCCGATCCCCGACTTGCGCATTAT
Found at i:18426848 original size:154 final size:155
Alignment explanation
Indices: 18426365--18426851 Score: 436
Period size: 158 Copynumber: 3.1 Consensus size: 155
18426355 CCCAGTCTAA
* * * ** *
18426365 GCATACGAAGTTCATTCCAGTCTATGATCGGACCGGACTGAGGGTT-CGACAGCAGGATCGACAG
1 GCATACGAAGTTCATTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGATAG
** * *
18426429 CACGCAG-GGGTGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCTGCCAGCTGAGCGAC
66 CACGCAGAGGGT-ACC-GG-CGATCCCCGACTTACGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
* **
18426493 CGCACGCTCGTTTCATGGGTTGGCTTAG
128 CGCACGCTAGTTTTGTGGGTTGGCTTAG
* * * * * *
18426521 GCATAGCG-AGTGCATTCCATGTCTAAGCTCCAG-TCAGACTGAGGGTTGTGGTAGCGGGACCTG
1 GCATA-CGAAGTTCATTCCA-GTCTAAGAT-CAGATCGGACTGAGGGTTGCGGTAGCAGGATC-G
* * * * * * * ** **
18426584 -TAGCACGCAGAGGGGGATCGGGCTGATCCTCGACTTTCGTA-TATGCCTCTTCGATC-GACTCC
62 ATAGCACGCAGA-GGGTA-CCGGC-GATCCCCGACTTACGCATTCTGCCTCTCCGGCCAG-CTGA
* * *
18426646 GCACCCGCACGCTCA-TTTTGTGGGTTGACTTAT
123 GCGCCCGCACGCT-AGTTTTGTGGGTTGGCTTAG
* *
18426679 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGATA
* * *
18426744 GCACGCTGAGGGTACCGG-G-TCCCCGGCTTACGCATTCTGCCTCTCCGGCCAGCTGAACGCCCG
65 GCACGCAGAGGGTACCGGCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCG
*
18426807 CATGCTAGTTTTGTGGGTTGGCTTAG
130 CACGCTAGTTTTGTGGGTTGGCTTAG
18426833 GCATACGAAGTTCATTCCA
1 GCATACGAAGTTCATTCCA
18426852 TGTTTAAGCA
Statistics
Matches: 255, Mismatches: 58, Indels: 39
0.72 0.16 0.11
Matches are distributed among these distances:
153 13 0.05
154 57 0.22
155 1 0.00
156 18 0.07
157 32 0.13
158 112 0.44
159 18 0.07
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGATAG
CACGCAGAGGGTACCGGCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGC
ACGCTAGTTTTGTGGGTTGGCTTAG
Found at i:18427631 original size:26 final size:26
Alignment explanation
Indices: 18427595--18427647 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18427585 TTTGACTTTG
18427595 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
**
18427621 GCATACGAAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18427647 G
1 G
18427648 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.