Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 165 of 402
Found at i:18429339 original size:26 final size:26
Alignment explanation
Indices: 18429309--18429360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18429299 GTTGGTTTAG
*
18429309 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18429335 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18429361 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18430916 original size:26 final size:26
Alignment explanation
Indices: 18430887--18430939 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18430877 GTTGACTTAG
* *
18430887 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
18430913 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
18430939 G
1 G
18430940 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:18431380 original size:158 final size:157
Alignment explanation
Indices: 18430913--18431414 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 157
18430903 CCCAGTCTAA
* * * * *
18430913 GCATACAGAGTTCATTCCCA-ATCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAAGATAGTC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGAC
* * * *
18430977 AGCAGGCA-AGGGGGACCGGGTCGATCCCCGGCTTACGCATTTTGCCTCTCTGGCCGGCTAAGCG
65 AGCA--CATAGGGGGACCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGGCTGGCTAAGCG
* * * *
18431041 CCCGCACGCCCATTTCGTGGGTCGGCTGAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
18431071 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACT-GAGGGTTGCGACAGCAGGATCGA
* * * * * **
18431134 CAGCACGTAGAAGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTC-AATAGGCTCAA
64 CAGCACATAG--GGGGACCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGGCT-GGCT-AA
* * *
18431198 -CGCCCGCACACTCGTTTCGTGGGTTGACTTAT
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
18431230 GTATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGAC
* ** * * * *
18431294 AGTACATAGGGGGAAATGGGTCGATCCCTGGCTTATGCATTCTACCTCTCCGGCTGGCTGAGCGC
65 AGCACATAGGGGG-ACCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGGCTGGCTAAGCGC
*
18431359 CCGCACGCTCGTTCCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
18431388 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18431415 CATACAGAGT
Statistics
Matches: 270, Mismatches: 59, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 14 0.05
158 129 0.48
159 120 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
GCACATAGGGGGACCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGGCTGGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18431417 original size:26 final size:26
Alignment explanation
Indices: 18431388--18431466 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
18431378 GTTGGCTTAG
*
18431388 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
18431414 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
18431440 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
18431466 G
1 G
18431467 ATTTTGAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:18432185 original size:26 final size:26
Alignment explanation
Indices: 18432148--18432200 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18432138 GTTGACTTAG
18432148 GCATACGAAGTT-AATCCCTAGTCTAA
1 GCATACGAAGTTCAATCCC-AGTCTAA
* *
18432174 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
18432200 G
1 G
18432201 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:18432526 original size:159 final size:160
Alignment explanation
Indices: 18432286--18432663 Score: 408
Period size: 158 Copynumber: 2.4 Consensus size: 160
18432276 CGGCCAGTTG
* * * *
18432286 AGCGCCCGCACGCACGTTTTGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCACGTCT-A-ATTC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGATTC
* * * * * * *
18432349 CTAGCTGGATCGAGGGTTGTAGCAGCGGGACCGGTAGCATGCAGAGGGGGACCAGACCGATCCCT
66 CGAGCTGGATCGAAGGTTGCAGCAGCAGGACCGATAGCACGCAG-GGGGGACCAGACCAATCCCT
* * *
18432414 GGCTTGCGTATTATGCCTCTCTG-TCCGGCTC
130 GGCTTACGCATTATGCCTCTCCGAT-CGGCTC
* * * *
18432445 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCC-CAGTCTAAGATT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTCTAAGATT
* * * * * * * *
18432509 -GGATC-GGATCGAAGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGATCGGGCCAATCCCT
65 CCGAGCTGGATCGAAGGTTGCAGCAGCAGGACCGATAGCACGCAGGGGGGACCAGACCAATCCCT
* *
18432572 GGCTTACGCATTCTGCCTCTCCGATCGGCTG
130 GGCTTACGCATTATGCCTCTCCGATCGGCTC
* * *
18432603 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG
18432664 CATACGGAGT
Statistics
Matches: 180, Mismatches: 34, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
158 94 0.52
159 80 0.44
160 3 0.02
161 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (160 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGATTC
CGAGCTGGATCGAAGGTTGCAGCAGCAGGACCGATAGCACGCAGGGGGGACCAGACCAATCCCTG
GCTTACGCATTATGCCTCTCCGATCGGCTC
Found at i:18432630 original size:158 final size:160
Alignment explanation
Indices: 18432256--18432663 Score: 423
Period size: 159 Copynumber: 2.6 Consensus size: 160
18432246 TCGATCCCCA
* * * * * * *
18432256 GCTTGCGCATTCTACCTCTCCGGCCAGTTGAGCGCCCGCACGCACGTTTTGTGGGTTGGCTTGGG
1 GCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * *
18432321 CATAGGGAGTTCATTCCACGTCT-A-ATTCCTAGCTGGATCGAGGGTTGTAGCAGCGGGACCGGT
65 CATACGGAGTTCATTCCACGTCTAAGATTCCGAGCTGGATCGAAGGTTGCAGCAGCAGGACCGAT
* *
18432384 AGCATGCAGAGGGGGACCAGACCGATCCCTG
130 AGCACGCAGAGGGGGACCAGACCAATCCCTG
* * * * * * *
18432415 GCTTGCGTATTATGCCTCTCTGTCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
1 GCTTGCGCATTCTGCCTCTCCGT-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * *
18432480 CATATGGAGTTCATTCC-CAGTCTAAGATT-GGATC-GGATCGAAGGTTGCGGTAGCAGGATCGA
65 CATACGGAGTTCATTCCAC-GTCTAAGATTCCGAGCTGGATCGAAGGTTGCAGCAGCAGGACCGA
* * *
18432542 TAGCACGCAG-GGGGGATCGGGCCAATCCCTG
129 TAGCACGCAGAGGGGGACCAGACCAATCCCTG
* *
18432573 GCTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* *
18432638 CATACAGAGTTCATTCCATGTCTAAG
65 CATACGGAGTTCATTCCACGTCTAAG
18432664 CATACGGAGT
Statistics
Matches: 201, Mismatches: 42, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
158 95 0.47
159 100 0.50
160 3 0.01
161 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (160 bp):
GCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCACGTCTAAGATTCCGAGCTGGATCGAAGGTTGCAGCAGCAGGACCGATA
GCACGCAGAGGGGGACCAGACCAATCCCTG
Found at i:18432673 original size:26 final size:26
Alignment explanation
Indices: 18432637--18432689 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18432627 GTTGGCTTAG
18432637 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
18432663 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18432689 G
1 G
18432690 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18433405 original size:159 final size:157
Alignment explanation
Indices: 18433043--18433544 Score: 404
Period size: 158 Copynumber: 3.2 Consensus size: 157
18433033 CCCAGTCTAA
* *
18433043 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACGGGACAGAGGGTTGTGACAGCAGGACCCGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACTGAGGGTTGTGACAGCAGGACCCGCA
* * * * *
18433108 GCATGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGCTGAGCGCC
65 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCACC
*
18433173 CGCACGACAGTTTCGTGGGTTGGCTTAG
130 CGCACGACAGTTTCGTGGGTTGACTTAG
* ** ** * * * **
18433201 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAACCGGA-TCAAGGGTTGTGGCAGCGGGACTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CGGACT-GAGGGTTGTGACAGCAGGACCCG
* * * * * * * * **
18433264 CAGCACGTAGAGGGGGACTGGGTCGATCCTCGGCTTGCGCATTATGCCTGTTCGGCTGGCTCAGC
63 CAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGC
* * *
18433329 ACCTGCACG-CTCGTTTCGTGGGTTGACTTAT
127 ACCCGCACGAC-AGTTTCGTGGGTTGACTTAG
* ** * * * **
18433360 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGTAGAATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACTGAGGGTTGTGACAGCAGGACCCGCA
* * * * * * * * * * *
18433425 GCACGCAGGAGGGATCG-GACCGATCCCTGACTTACGCATTCTACCTCTCTGGCCGGCTGAGCAC
65 GCACGCAGGGGGGACCGAG-CCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCAC
* *
18433489 CCGCACG-CTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGAC-AGTTTCGTGGGTTGACTTAG
18433518 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
18433545 CATACGGAGT
Statistics
Matches: 269, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 7 0.03
158 141 0.52
159 117 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACTGAGGGTTGTGACAGCAGGACCCGCAG
CACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCACCC
GCACGACAGTTTCGTGGGTTGACTTAG
Found at i:18433569 original size:26 final size:26
Alignment explanation
Indices: 18433518--18433570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18433508 GTTGGCTTAG
*
18433518 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
18433544 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
18433570 G
1 G
18433571 ATTTTGGGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:18437754 original size:26 final size:26
Alignment explanation
Indices: 18437724--18437776 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18437714 GTTGACTTAG
* *
18437724 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18437750 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18437776 G
1 G
18437777 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18438038 original size:158 final size:159
Alignment explanation
Indices: 18437874--18438292 Score: 470
Period size: 159 Copynumber: 2.6 Consensus size: 159
18437864 TAGCCAGCTG
* * *
18437874 AGCGCCCGCACGCCCGTTTCATGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCGCC
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACC
*
18437939 AG-CTGGACCGAGGGTTGTGGTAGCGGGACCGACAGTACG-AGAGGG-GGACCGGGCCGATCCTC
66 AGTC-GGACCGAGGGTTGTGGTAGCAGGACCGACAGTACGCA-AGGGTGGACCGGGCCGATCCTC
*
18438001 GACTTGCACATTATGCCTCTTCAACTGGCTC
129 GACTTGCACATTATGCCTCTCCAACTGGCTC
* *
18438032 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCA-
* * * * * * * * * *
18438095 CAAATCGAATCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAAGGGTGGACCGGGTCGATCGTC
64 CCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGACAGTACGCAAGGGTGGACCGGGCCGATCCTC
** * ** *
18438160 GACTTGCGTATTTTGCCTCTCCGGCTGGCTG
129 GACTTGCACATTATGCCTCTCCAACTGGCTC
* * * * * *
18438191 AGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACC
* * * *
18438256 AGTCGGACTGAGGATTGTGGCAGCAGGACCGGCAGTA
66 AGTCGGACCGAGGGTTGTGGTAGCAGGACCGACAGTA
18438293 GGATCGACAG
Statistics
Matches: 212, Mismatches: 42, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
158 90 0.42
159 122 0.58
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACC
AGTCGGACCGAGGGTTGTGGTAGCAGGACCGACAGTACGCAAGGGTGGACCGGGCCGATCCTCGA
CTTGCACATTATGCCTCTCCAACTGGCTC
Found at i:18438438 original size:26 final size:26
Alignment explanation
Indices: 18438409--18438461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18438399 GTTGACTTAG
18438409 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18438435 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18438461 G
1 G
18438462 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18438751 original size:159 final size:160
Alignment explanation
Indices: 18438435--18438939 Score: 431
Period size: 159 Copynumber: 3.2 Consensus size: 160
18438425 CCCAGTCTAA
* ** * * *
18438435 GCATACGGAGTTCATTCTCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGCACCAGACCAGACCAAGGGTTTCGGCAGCAGGATCGA
* * * * * * * * * *
18438498 CAACACG-TAGGGGGGATCGGGCCAATCCCCAACTTGCGCATTCTGCCTCTTC-GACCGG-TCGA
65 CAACATGCAAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCAG-CTGGCTC-A
* ** *
18438560 GTGCCTGCACG-TCCGTTTCGTGGGTTGGCTTAG
128 GCGCCCACACGCT-CATTTCGTGGGTTGGCTTAG
* * * * *
18438593 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGT-GGCAGTAGGATCGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTT-TCGGCAGCAGGATCGA
* *
18438656 CAACATG-TAGAGGGGGACCGGG-CTGATCCCCAGCTTGCGCATTATGCCTCTCCAGCTGGCTCA
65 CAACATGCAAG-GGGGGACCGGGTC-GATCCCCAGCTTACGCATTATGCCTCTCCAGCTGGCTCA
** * * *
18438719 TTGCCCATACGCTCATTTTGTGGGTTGACTTAG
128 GCGCCCACACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
18438752 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCGGACCAGATCGAGGGTTTCGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCAAGGGTTTCGGCAGCAGGATCGA
* ** * * * *
18438815 CAGCATGCAAGGGGGGATTGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCAGCTGGCTGAGC
65 CAACATGCAAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCAGCTGGCTCAGC
* *
18438880 GCCCACACGCTCGTTTCATGGGTTGGCTTAG
130 GCCCACACGCTCATTTCGTGGGTTGGCTTAG
*
18438911 GCATACAGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
18438940 TACGGAGTTC
Statistics
Matches: 282, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
157 2 0.01
158 60 0.21
159 211 0.75
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTTCGGCAGCAGGATCGAC
AACATGCAAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCAGCTGGCTCAGCG
CCCACACGCTCATTTCGTGGGTTGGCTTAG
Found at i:18438941 original size:26 final size:26
Alignment explanation
Indices: 18438911--18438963 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18438901 GTTGGCTTAG
18438911 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
18438937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18438963 G
1 G
18438964 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18439077 original size:185 final size:182
Alignment explanation
Indices: 18438752--18439307 Score: 589
Period size: 185 Copynumber: 3.0 Consensus size: 182
18438742 GTTGACTTAG
* * **
18438752 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGA-TCGAGGGTTTCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTACGACAGCAGGATCGAC
* * * *
18438816 AGCATGCAAGGGGGGATTGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCAGCTGGCTGAGCG
65 AGCACG-AAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGC-GACTGAGCG
* *
18438881 CCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA
* * *
18438937 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGATCGACA
* * * * * *
18439002 GCACGTAGGGGGCGATCGGG-CTGATCCCCGACTTACGCATTTTGCCTCTTCGGTCGACTGAGCA
66 GCACGAAGGGGG-GATCGGGTC-GATCCCCGGCTTACGCATTCTGCCTCTCCAG-CGACTGAGCG
* *** *
18439066 CCCGTACGCTCGTTTCATGGGTTAATTTAGGCATACGGAGTTCATCCCCAGTCTAA
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAA
** * * * * * * *
18439122 GCATACGGAGTTCATTAACAATCTATGATTGGATCAGACCGAGGGTTGCGACAGCAGGATC-AGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGATCGA-C
* * * * * *
18439186 AG-ACTGCAGGGGGGACCTGGTCGATCACCGGCTTGCGCATTCTGCCTCTCCAGCCGACTAAGCG
65 AGCAC-GAAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAG-CGACTGAGCG
* * * *
18439250 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAA
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAA
18439306 GC
1 GC
18439308 CACAGTCAGA
Statistics
Matches: 305, Mismatches: 57, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
183 2 0.01
184 94 0.31
185 204 0.67
186 5 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGATCGACA
GCACGAAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAA
Found at i:18439146 original size:26 final size:26
Alignment explanation
Indices: 18439096--18439146 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
18439086 GTTAATTTAG
** *
18439096 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCAACAATCTAA
*
18439122 GCATACGGAGTTCATTAACAATCTA
1 GCATACGGAGTTCATCAACAATCTA
18439147 TGATTGGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCAACAATCTAA
Found at i:18439381 original size:687 final size:686
Alignment explanation
Indices: 18438386--18439651 Score: 1711
Period size: 687 Copynumber: 1.8 Consensus size: 686
18438376 GCGCCTGCAT
* *
18438386 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
** * * * *
18438451 CTCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAACACGTAGGGGGGATC
66 AACAATCTAAGATCAGACTAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGGACC
* * * * * * * *
18438516 GGGCCAATCCCCAACTTGCGCATTCTGCCTCTTCGACCGGTCGAGTGCCTGCACGTCCGTTTCGT
131 GGGCCAATCACCAACTTGCGCATTCTGCCTCTCCGACCGCTCAAGCGCCCGCACGCCCATTTCGT
* * *
18438581 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCA
196 GGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCACAGCCAGACCAAGGGTTGTGGCA
* ** * * *
18438646 GTAGGATCGGCAACATGTAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCAG
261 GCAGGATCGGCAACACATAAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAA
* * * * * *
18438711 CTG-GCTCATTGCCCATACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
326 CCGAG-TCAGTGCCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * **
18438775 TAAGATCGGACCAGATCGAGGGTTTCGGTAGCAGGATCGACAGCATGCA-AGGGGGGATTGGGTC
390 TAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCA--CATAGGGGGCACCGGGTC
* * * *
18438839 GATCCTCGGCTTACGCATTCTGCCTCTCC-AGCTGGCTGAGCGCCCACACGCTCGTTTCATGGGT
453 GATCCCCGGCTTACGCATTCTACCTCTCCGATC-GGCTGAGCGCCCACACGCTCATTTCATGGGT
* * * *
18438903 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
517 TAGCTTAGGCATACAGAATTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCG
18438968 AACCGGACTGAGGGTTACGACAGTAGGATCGACAGCACGTAGGGGGCGATCGGGCTGATCCCCGA
582 AACCGGACTGAGGGTTACGACAGTAGGATCGACAGCACGTAGGGGGCGATCGGGCTGATCCCCGA
18439033 CTTACGCATTTTGCCTCTTCGGTCGACTGAGCACCCGTAC
647 CTTACGCATTTTGCCTCTTCGGTCGACTGAGCACCCGTAC
*
18439073 GCTCGTTTCATGGGTTAATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* ** ** *
18439138 AACAATCTATGATTGGA-TCAGACCGAGGGTTGCGACAGCAGGATC-AGTAGACTGCAGGGGGGA
66 AACAATCTAAGATCAGACT-AGACCGAGGGTTGCGACAGCAGGATCGACAACAC-GCAGGGGGGA
* * * **
18439201 CCTGGTCGATCACCGGCTTGCGCATTCTGCCTCTCC-AGCCGACT-AAGCGCCCGCACGCCCATT
129 CCGGGCCAATCACCAACTTGCGCATTCTGCCTCTCCGA-CCG-CTCAAGCGCCCGCACGCCCATT
*
18439264 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCACAGTCAGACCAAGGGTTGT
192 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCACAGCCAGACCAAGGGTTGT
* * * * * *
18439329 GGCAGCGGGA-CTGGCAGCACATAAAGGGGGATCGGGCCGCTCCTCGGCTTGCGCATTATGCCTC
257 GGCAGCAGGATC-GGCAACACATAAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTC
* * ** *
18439393 TTCAACCGAGTCAGTGCCCGCACACTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCC
321 TCCAACCGAGTCAGTGCCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
18439458 AGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGCACCGGG
386 AGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGCACCGGG
* * * *
18439523 TCGATCCCCGGCTTGCTCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
451 TCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCCACACGCTCATTTCATGGG
*
18439588 TTAGCTTAGGCATACGGAATTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
516 TTAGCTTAGGCATACAGAATTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
18439652 TTTGAGCCAC
Statistics
Matches: 495, Mismatches: 76, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
685 2 0.00
686 130 0.26
687 361 0.73
688 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (686 bp):
GCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
AACAATCTAAGATCAGACTAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGGACC
GGGCCAATCACCAACTTGCGCATTCTGCCTCTCCGACCGCTCAAGCGCCCGCACGCCCATTTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCACAGCCAGACCAAGGGTTGTGGCA
GCAGGATCGGCAACACATAAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAA
CCGAGTCAGTGCCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGCACCGGGTCGAT
CCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCCACACGCTCATTTCATGGGTTAGC
TTAGGCATACAGAATTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACC
GGACTGAGGGTTACGACAGTAGGATCGACAGCACGTAGGGGGCGATCGGGCTGATCCCCGACTTA
CGCATTTTGCCTCTTCGGTCGACTGAGCACCCGTAC
Found at i:18439611 original size:158 final size:155
Alignment explanation
Indices: 18439195--18439625 Score: 440
Period size: 159 Copynumber: 2.7 Consensus size: 155
18439185 TAGACTGCAG
* * * *
18439195 GGGGGACCTGGTCGATCACCGGCTTGCGCATTCTGCCTCTCCAGCCGACTAAGCGCCCGCACGCC
1 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCA-CCGGCTAAGCGCCCGCACGCT
* * * * *
18439260 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCACAGTCAGACCAAGGG
65 CATTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-CACAGCCAAACCGAGGG
* * *
18439325 TTGTGGCAGCGGGA-CTGGCAGCACATAAA
128 TTGCGGCAGCAGGATC-GACAGCACAT-AA
* * * * * * * * *
18439354 GGGGGATCGGGCCGCTCCTCGGCTTGCGCATTATGCCTCTTCAACCGAG-TCAGTGCCCGCACAC
1 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCCACCG-GCTAAGCGCCCGCACGC
** *
18439418 TTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAAACCGAG
64 TCATTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-CAG-CCAAACCGAG
18439482 GGTTGCGGCAGCAGGATCGACAGCACAT-A
126 GGTTGCGGCAGCAGGATCGACAGCACATAA
* * * *
18439511 GGGGGCACCGGGTCGATCCCCGGCTTGCTCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGC
1 GGGGG-ACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-ACCGGCTAAGCGCCCGCACGC
*
18439576 TCATTTCGTGGGTTAGCTTAGGCATACGGAATTCA-TCCCATGTCTAAGCA
64 TCATTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCA
18439626 TACGGAGTTC
Statistics
Matches: 220, Mismatches: 40, Indels: 24
0.77 0.14 0.08
Matches are distributed among these distances:
157 15 0.07
158 82 0.37
159 119 0.54
160 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (155 bp):
GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCACCGGCTAAGCGCCCGCACGCTC
ATTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACAGCCAAACCGAGGGTTG
CGGCAGCAGGATCGACAGCACATAA
Found at i:18439647 original size:26 final size:26
Alignment explanation
Indices: 18439597--18439649 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18439587 GTTAGCTTAG
*
18439597 GCATACGGAATTCATCCCATGTCTAA
1 GCATACGGAATTCATCCCATATCTAA
*
18439623 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAATTCA-TCCCATATCTAA
18439649 G
1 G
18439650 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCATATCTAA
Found at i:18440663 original size:159 final size:160
Alignment explanation
Indices: 18440392--18440859 Score: 581
Period size: 159 Copynumber: 2.9 Consensus size: 160
18440382 ATCGGACCGG
* * * *
18440392 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGGA-GGGATCGAGTCGATCCTCGGCTTGCG
1 ACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAAGGGGATCGGGCCGATCCTCGGCTTGCG
* * *
18440456 CATTCTACCTTTCTGGCTGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAG
66 CATTCTACCTCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGAG
*
18440521 AGTTCATTCCATGTCTAAGCCCCAG-CCAA
131 AGTTCATTCCATGTCTAAGCACCAGACCAA
* * *
18440550 ACCGAGGGTTATGGCAACGGGATCGACAGCACGCAGAAGGGGATCGGGCCGATCCTCGGCTTGCG
1 ACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAAGGGGATCGGGCCGATCCTCGGCTTGCG
* * * * * * * *
18440615 CATTATGCCTCTCTGGCTGGCTCAGCACCTGCACGCTTGTTTTGTGGGTTGACTTAGGCAT-GCA
66 CATTCTACCTCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAG-A
* **
18440679 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGG
130 GAGTTCATT-CCATGTCTAAGCACCAGACCAA
* * * * * *
18440709 ACCGAGAGTTACGGTAGCAGGATCGACAGCACGCA-AGGGGGGATCGGCCCAATCCCCGGCTTGC
1 ACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGA-AGGGGATCGGGCCGATCCTCGGCTTGC
* *
18440773 GCATTCTACCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
65 GCATTCTACCTCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-G
18440838 -GAGTTCATTCCATGTCTAAGCA
129 AGAGTTCATTCCATGTCTAAGCA
18440860 TACGGAGTTC
Statistics
Matches: 260, Mismatches: 41, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
158 41 0.16
159 214 0.82
160 4 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (160 bp):
ACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAAGGGGATCGGGCCGATCCTCGGCTTGCG
CATTCTACCTCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGAG
AGTTCATTCCATGTCTAAGCACCAGACCAA
Found at i:18440867 original size:26 final size:26
Alignment explanation
Indices: 18440831--18440883 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18440821 GTTGGCTTAG
18440831 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18440857 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18440883 G
1 G
18440884 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18441731 original size:513 final size:516
Alignment explanation
Indices: 18440993--18442040 Score: 1249
Period size: 513 Copynumber: 2.0 Consensus size: 516
18440983 CATCCAGAGC
* * * *
18440993 CCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGT
1 CCATGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGGCAGT
* * * *
18441058 AGGACCAGCAGCAGGATCGATAGCATGCAGGGGGGACCAGGTCGATCCTCGACTTGCGTATTCTG
66 AGGACCAGCAGCAAGATCGACAGCATGCAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTA
*** *
18441123 CCTCTCCGATTGGCTGAGCCCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCAT
131 CCTCTCCGACCAGCTGAGCCCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGAAGTTCAT
* * *
18441188 TCCATGTCTAAGACCCAGTCGGATCGAGGGTTGTGGCAGCGGGACCGATAGC-AT-GCA-G-AGA
196 TCCATGTCTAAGACCCAGCCAGATCGAGGGTTGTGGCAGCAGGACCGATAGCGATAGCACGCAGA
* ** *
18441249 -GGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAATGCCCGTACGCTC
261 GGGGACCAGGCCGAT-CCCGACTTGCGCATTATGCCTCTCCGGCCGACTCAACACCCGCACGCTC
* * * *
18441313 ATTTCATG-GGTTGAGTTAGGCTTACGGAGTTCATTCCCAATCTAAGATC-AGACCAGACCGAGG
325 ATTT--TGAGGTTGACTTAGGCATACGGACTTCATCCCCAATCTAAGATCGA-ACCAGACCGAGG
* * *
18441376 GCTGC-GGTAGCAAGATCGACAGCACGTAAGGGGG-ACCGGGTCGGTCCCCGGCTTGCGCATTCT
387 G-TGCTGGTAGCAAGATCGACAACACG-AAGGGGGAACCGGGTCGATCCCCGGCTTACGCATTCT
* * * * * * *
18441439 GCCTCTTCGGTCAGCTAAGCGCCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
450 ACCTCTCCGATCAGCTAAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTACA
18441504 TT
515 TT
* * * *
18441506 CCATGTCTAAGCATCCAGAGTTCATTCCTAGTCCAAGATCGGATCGGACCGAGGGTTGCGGCAGT
1 CCATGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGGCAGT
* * * *
18441571 AGGACC-GACAGCAAGATCGACAGCCTGCAGGGGGGACCGGGTCGATCCTTGGCTTGCGCATTCT
66 AGGACCAG-CAGCAAGATCGACAGCATGCAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCT
* * **
18441635 ACCTCAT-CGGCCAGTTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAG-AGTT
130 ACCTC-TCCGACCAGCTGAGCCCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA-AGAAGTT
* *
18441698 CATTCCATGTCTAAG-CCCTAGCCAGATCGAGGGTTGTGGTAGCAGGACTGATAGCGGGATCAAC
193 CATTCCATGTCTAAGACCC-AGCCAGATCGAGGGTTGTGGCAGCAGGACCGATAGC--GAT----
* * * * *
18441762 AGCACGCAGAGGGGGACCGGGCTGATCCCGGCTTGTGCATTATGCCTCTCCGGCCGACTGAACAC
251 AGCACGCAGA-GGGGACCAGGCCGATCCCGACTTGCGCATTATGCCTCTCCGGCCGACTCAACAC
* * **
18441827 CCGCACGCTCATTTTGAGGTTGACTTAGGCATATGGACTTCATCCCCAGTCTAAGATCGAATTAG
315 CCGCACGCTCATTTTGAGGTTGACTTAGGCATACGGACTTCATCCCCAATCTAAGATCGAACCAG
* * * * **
18441892 ACTGAGGGTTCTGGTAGCAGGATCGACAACACGCAGGGGGAACTTGGTCGATCCCCGGCTTACGC
380 ACCGAGGGTGCTGGTAGCAAGATCGACAACACGAAGGGGGAACCGGGTCGATCCCCGGCTTACGC
* * * * *
18441957 ATTTTACCTCTCCGATCGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGA
445 ATTCTACCTCTCCGATCAGCTAAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATACGGA
18442022 GTACATT
510 GTACATT
18442029 CCATGTCTAAGC
1 CCATGTCTAAGC
18442041 CCCAGCCGGA
Statistics
Matches: 448, Mismatches: 67, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
512 4 0.01
513 208 0.46
514 2 0.00
516 2 0.00
521 3 0.01
522 11 0.02
523 159 0.35
524 47 0.10
525 12 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (516 bp):
CCATGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGGCAGT
AGGACCAGCAGCAAGATCGACAGCATGCAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTA
CCTCTCCGACCAGCTGAGCCCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGAAGTTCAT
TCCATGTCTAAGACCCAGCCAGATCGAGGGTTGTGGCAGCAGGACCGATAGCGATAGCACGCAGA
GGGGACCAGGCCGATCCCGACTTGCGCATTATGCCTCTCCGGCCGACTCAACACCCGCACGCTCA
TTTTGAGGTTGACTTAGGCATACGGACTTCATCCCCAATCTAAGATCGAACCAGACCGAGGGTGC
TGGTAGCAAGATCGACAACACGAAGGGGGAACCGGGTCGATCCCCGGCTTACGCATTCTACCTCT
CCGATCAGCTAAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTACATT
Found at i:18442306 original size:317 final size:321
Alignment explanation
Indices: 18441650--18442356 Score: 786
Period size: 317 Copynumber: 2.2 Consensus size: 321
18441640 ATCGGCCAGT
* *
18441650 TGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * *
18441715 CTAGCCAGATCGAGGGTTGTGGTAGCAGGACTGATAGCGGGATCAACAGCACGCAGAGGGGGACC
66 CCAGCCAGACCGAGGGTTGTGGT---AGGAC---TAGCGGGACCAACAGCACGCAGAGGGGGACC
* ** * * *
18441780 GGGCTGATCCCGGCTTGTGCATTATGCCTCTCCGGCCGACTGAACACCCGCACGCTCATTTTGAG
125 GGGCCGATCCCAACTTGCGCATTACGCCTCTCCGGCCGACTCAACACCCGCACGCTCATTTTGAG
* * *
18441845 GTTGACTTAGGCATATGGACTTCATCCCCAGTCTAAGATCGAATTAGACTGAGGGTTCTGGTAGC
190 GTTGACTTAGGCATATGGACTTCATCCCCAGTCTAAGATCGAATCAGACTGAGGGTTCTAGCAGC
* * * *
18441910 AGGATCGACAACACGCAGGGGGAACTTGGTCGATCCCCGGCTTACGCATTTTACCTCTCCGATCG
255 AGGATCGACAACACGCAGGGGGAACTGGGCCGATCCCCAGCTTACGCATTTTACCTCTCCGACCG
*
18441975 GC
320 AC
* * * * *
18441977 TGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * * * * *
18442042 CCAGCCGGACCGAGGG-T-T-GT-GG-C-AGCGGGACCGACAGCACGTAGATGTGGATCGGGCCG
66 CCAGCCAGACCGAGGGTTGTGGTAGGACTAGCGGGACCAACAGCACGCAGAGGGGGACCGGGCCG
* * * * * *
18442101 ATCCCCAACTTGCGCATTACGCCTCTTCGGCCTATTCAGCGCCCGCACGCTCGTTTCGTG-GGTT
131 AT-CCCAACTTGCGCATTACGCCTCTCCGGCCGACTCAACACCCGCACGCTCATTT--TGAGGTT
* * * * * *
18442165 GACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGC-AGCAGCAT
193 GACTTAGGCATATGGACTTCATCCCCAGTCTAAGATCGAATCAGACTGAGGGTT-CTAGCAGCAG
* * * * * * *
18442229 GATCGACAGCACGTAGGGGGGA-TCGGGCCGATCCCCATCTTGCGC-TTTCTGCCTCTTCGACCG
257 GATCGACAACACGCAGGGGGAACT-GGGCCGATCCCCAGCTTACGCATTT-TACCTCTCCGACCG
18442292 AC
320 AC
*
18442294 TGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
18442357 GATATGGAGT
Statistics
Matches: 319, Mismatches: 55, Indels: 22
0.81 0.14 0.06
Matches are distributed among these distances:
315 31 0.10
316 46 0.14
317 161 0.50
318 3 0.01
319 1 0.00
320 2 0.01
324 2 0.01
325 1 0.00
326 1 0.00
327 71 0.22
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (321 bp):
TGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGCCAGACCGAGGGTTGTGGTAGGACTAGCGGGACCAACAGCACGCAGAGGGGGACCGGGCCG
ATCCCAACTTGCGCATTACGCCTCTCCGGCCGACTCAACACCCGCACGCTCATTTTGAGGTTGAC
TTAGGCATATGGACTTCATCCCCAGTCTAAGATCGAATCAGACTGAGGGTTCTAGCAGCAGGATC
GACAACACGCAGGGGGAACTGGGCCGATCCCCAGCTTACGCATTTTACCTCTCCGACCGAC
Found at i:18442323 original size:158 final size:160
Alignment explanation
Indices: 18441754--18442356 Score: 539
Period size: 158 Copynumber: 3.8 Consensus size: 160
18441744 ACTGATAGCG
* * * * * * *
18441754 GGATCAACAGCACGCAGAGGGGGACCGGGCTGAT-CCCGGCTTGTGCA-TTATGCCTCTCCGGCC
1 GGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTTCTGCCTCTCCGACC
* * *
18441817 GACTGAACACCCGCACGCTCATTT--TGAGGTTGACTTAGGCATATGGACTTCATCCCCA-GTCT
66 GACTGAGCACCCGCACGCTCATTTCGTG-GGTTGACTTAGGCATATGGAGTTCAT-TCCATGTCT
** *
18441879 AAGATCGAATTAGACTGAGGGTT-CTGGTAGCA
129 AAGATCGAATCGGACTGAGGGTTGC-GGCAGCA
* * * * * * * *
18441911 GGATCGACAACACGC--AGGGGGAACTTGGTCGATCCCCGGCTTACGCATTT-TACCTCTCCGAT
1 GGATCGACAGCACGCAGAGGGGGATC-GGGCCGATCCCCAGCTTGCGCATTTCTGCCTCTCCGAC
* * * * * * *
18441973 CGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTCTA
65 CGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTA
** * ** * * *
18442038 AGCCCCAGCCGGACCGAGGGTTGTGGCAGCG
130 AGATCGAATCGGACTGAGGGTTGCGGCAGCA
* * * * * * * *
18442069 GGACCGACAGCACGTAGATGTGGATCGGGCCGATCCCCAACTTGCGCATTAC-GCCTCTTCGGCC
1 GGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTTCTGCCTCTCCGACC
* * * * * *
18442133 TATTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTA
66 GACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATT-CCATGTCTA
* *
18442197 AGATCGGATCGGACTGAGGGTTGCAGCAGCA
130 AGATCGAATCGGACTGAGGGTTGCGGCAGCA
* * * *
18442228 TGATCGACAGCACGTAG-GGGGGATCGGGCCGATCCCCATCTTGCGC-TTTCTGCCTCTTCGACC
1 GGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTTCTGCCTCTCCGACC
* * *
18442291 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAA
18442356 G
131 G
18442357 GATATGGAGT
Statistics
Matches: 349, Mismatches: 84, Indels: 25
0.76 0.18 0.05
Matches are distributed among these distances:
155 8 0.02
156 5 0.01
157 63 0.18
158 152 0.44
159 112 0.32
160 9 0.03
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (160 bp):
GGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTTCTGCCTCTCCGACC
GACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAA
GATCGAATCGGACTGAGGGTTGCGGCAGCA
Found at i:18443081 original size:26 final size:26
Alignment explanation
Indices: 18443051--18443103 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18443041 GTTGACTTAG
18443051 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
18443077 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18443103 G
1 G
18443104 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18443380 original size:159 final size:158
Alignment explanation
Indices: 18443112--18443397 Score: 351
Period size: 159 Copynumber: 1.8 Consensus size: 158
18443102 AGATCGGATC
* *
18443112 GGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGC
1 GGACCGAGGGTTGCGGCAGGAGAATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGC
* * * * * *
18443177 GGATTCTGCATCTCTGACCGACTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATTGG
66 GCATTATGCATCTCGGACAGACTCAGCACCCGCACACCCATTTCATGGGTTGACTTAGGCATTGG
18443242 GAGTTCATTCCATGCCTAATCTCTAGCT
131 GAGTTCATTCCATGCCTAATCTCTAGCT
* * * *
18443270 GGACCGAGGGTTGTGGCAGCGAGAAT-GGCAGCATGCAGAGGTGGACCGGGCCGATCCCCGACTT
1 GGACCGAGGGTTGCGGCAG-GAGAATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTT
* * * * * * * *
18443334 GCGCATTATGCCTCTCCGGTCAG-CTCAGCGCTCGCACGCTCGTTTCATGGGTTGACTTTGGCAT
64 GCGCATTATGCATCT-CGGACAGACTCAGCACCCGCACACCCATTTCATGGGTTGACTTAGGCAT
18443398 ACAGAGTGAA
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
158 28 0.27
159 73 0.70
160 4 0.04
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (158 bp):
GGACCGAGGGTTGCGGCAGGAGAATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGC
GCATTATGCATCTCGGACAGACTCAGCACCCGCACACCCATTTCATGGGTTGACTTAGGCATTGG
GAGTTCATTCCATGCCTAATCTCTAGCT
Found at i:18443947 original size:25 final size:26
Alignment explanation
Indices: 18443903--18443954 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
18443893 GCTAACTTAG
18443903 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
18443929 GCATAC-AAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18443954 G
1 G
18443955 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18444439 original size:26 final size:26
Alignment explanation
Indices: 18444403--18444455 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18444393 GTTGGCTTAG
*
18444403 GCATATGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
18444429 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
18444455 G
1 G
18444456 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:18452460 original size:26 final size:26
Alignment explanation
Indices: 18452431--18452483 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18452421 GTTGACTTAG
**
18452431 GCATACAGAGTTTGTCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18452457 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18452483 G
1 G
18452484 ATTAGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18452949 original size:158 final size:156
Alignment explanation
Indices: 18452457--18452964 Score: 511
Period size: 158 Copynumber: 3.2 Consensus size: 156
18452447 CCCAGTCTAA
** * * *
18452457 GCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CTAGACCGAGGGTTGCGGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * *
18452521 AGCACACAGAGGGGATCGAGCCGATCCCTAGCTTGCGCATTCTGCCTTTCCGATCGGCTGAGCGC
65 AGCACGCAGAGGGGATCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
18452586 CC-ACACGCCCATTTTATGGGTTGGCTTAG
129 CCGA-ACGCTCATTTCAT-GGTTGGCTTAG
* ** ** * * *
18452615 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGCCAGCGGGATCGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGAT
** * * * *
18452679 AGCACGCAGAAAAGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGTG
65 AGCACGCAG-AGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* * **
18452744 CCCGAATGCTCATTTCGTGGTTTAACTTAG
128 CCCGAACGCTCATTTCATGG-TTGGCTTAG
* *
18452774 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * * * *
18452839 GTATGCAGGGGGGACCGGGTC-AGTCCTCGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCGC
66 GCACGCAGAGGGGATCGGGCCGA-TCC-CGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * *
18452903 CTGTACGCTCGTTTCATAGGTTGGCTTAG
129 CCGAACGCTCATTTCAT-GGTTGGCTTAG
*
18452932 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA
18452965 CTAGACTGAT
Statistics
Matches: 280, Mismatches: 60, Indels: 20
0.78 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 146 0.52
159 121 0.43
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGAGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GAACGCTCATTTCATGGTTGGCTTAG
Found at i:18453069 original size:13 final size:13
Alignment explanation
Indices: 18453051--18453075 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18453041 TGCTGATTCT
18453051 GCCTCTCCGGCCA
1 GCCTCTCCGGCCA
18453064 GCCTCTCCGGCC
1 GCCTCTCCGGCC
18453076 TGCTGAGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.56, G:0.24, T:0.16
Consensus pattern (13 bp):
GCCTCTCCGGCCA
Found at i:18453145 original size:26 final size:26
Alignment explanation
Indices: 18453115--18453167 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18453105 GTTGACTTAG
*
18453115 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18453141 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18453167 G
1 G
18453168 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18453747 original size:329 final size:329
Alignment explanation
Indices: 18453149--18453751 Score: 812
Period size: 329 Copynumber: 1.8 Consensus size: 329
18453139 AAGCATACGA
* * *
18453149 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGATTGTGGCAGCAGGATCGATAGCACGCAA
1 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGATTGCGGCAGCAGGATCGATAGCACACAA
* * * * ** * * * * *
18453214 GGGGGACTGGGCCGATCCCTGACTTTTGCATTCTGCCTCTCTGATCGACTGAGCTCCCGCATGCT
66 GGGGGACCGAGCCGATCCCCGACCTACGCATTCTGCCTCTCGGATAGACTGAGCGCCCGCACGCC
* * *
18453279 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGGG
131 CGTTTCATGGGTTGGCATAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGTCGGACTGAGGG
* * ** * *
18453344 TTGTGGCAGCAAGATCGACAGCGAGATCGGCAGCATACAGAGGGTTACCGAGTTGATCGCCGGCT
196 TTGTGGCAGCAAGACCGACAGCGAGATCGGCAGCACACAGAGGGGGACCGAGTTGATCCCCGACT
*
18453409 TGCGCATTATGCCTTTTCGATCGGTTGAGCGCCCACACGATCGTTTCATGGGTTGACTTAGGCAT
261 TACGCATTATGCCTTTTCGATCGGTTGAGCGCCCACACGATCGTTTCATGGGTTGACTTAGGCAT
18453474 ATGG
326 ATGG
** * * *
18453478 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGATTGCGGCAGCAGGATCGATAGCACACAA
* * * *
18453543 GGGGGACCGAGCTGGTCCCCGGCCTACGCATTCTGCCTCTTCGGCTAG-CTGAGCGCCCGCACGC
66 GGGGGACCGAGCCGATCCCCGACCTACGCATTCTGCCTC-TCGGATAGACTGAGCGCCCGCACGC
* * *
18453607 CCGTTTCGTGGGTTGGCATAGGCGTAGGGAGTTCATTCCACGTCTAAGCCCCAGTCGGACTGAGG
130 CCGTTTCATGGGTTGGCATAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGTCGGACTGAGG
* * * * * *
18453672 GTTGTGGTAGCAGGACCTACAGCGAGATCGGTAGCACACAGAGGGGGACTGGGTTGATCCCCGAC
195 GTTGTGGCAGCAAGACCGACAGCGAGATCGGCAGCACACAGAGGGGGACCGAGTTGATCCCCGAC
18453737 TTACGCATTATGCCT
260 TTACGCATTATGCCT
18453752 CTCCTGTCGG
Statistics
Matches: 231, Mismatches: 42, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
329 226 0.98
330 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (329 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGATTGCGGCAGCAGGATCGATAGCACACAA
GGGGGACCGAGCCGATCCCCGACCTACGCATTCTGCCTCTCGGATAGACTGAGCGCCCGCACGCC
CGTTTCATGGGTTGGCATAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGTCGGACTGAGGG
TTGTGGCAGCAAGACCGACAGCGAGATCGGCAGCACACAGAGGGGGACCGAGTTGATCCCCGACT
TACGCATTATGCCTTTTCGATCGGTTGAGCGCCCACACGATCGTTTCATGGGTTGACTTAGGCAT
ATGG
Found at i:18454045 original size:697 final size:681
Alignment explanation
Indices: 18452404--18454339 Score: 1802
Period size: 697 Copynumber: 2.8 Consensus size: 681
18452394 CTGAGCGTCT
* * *
18452404 GCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTTGTCCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATAGA-AGTTTATCCCCAGTCTAAGCATACGGAGTT
*** * * *
18452469 CATTCCCAGTCTAAGATTAGACTAG-ACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAGG
65 CATTCCCAGTCTAAGAACGGA-TAGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGG
* * * * * * * * *
18452533 GGATCGAGCCGATCCCTAGCTTGCGCATTCTGCCTTTCCGATCGGCTGAGCGCCCACACGCCCAT
129 GGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGACTGAGCGCCCGCACG-CCGT
* *
18452598 TTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTG
193 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CGAGGGTTG
* ** * * *
18452663 TGCCAGCGGGATCGATAGCACGCAGAAAAGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTC
257 TGGCAGCAAGATCGACAGCACGCAGAAAAGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTC
* * * * *
18452728 TCCGATCGGCTCAGTGCCCGAATGCTCATTTCGTGGTTTAACTTAGGCATACGAAGTTCATTCCC
322 TCCGATCGGCTCAGCGCCCGAACGATCATTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCC
* * * * ** *
18452793 AGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGTATGCAGGGGGGACCGGG
387 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGACCGGC
* * * * * *
18452858 TCAGTCCTCGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCGCCTGTACGCTCGTTTCATAGG
452 TCAGTCCCCGGCCTACACATTCTGCCTCTCCGATCAGCTGAGCGCCCGCACGCCCGTTTCATAGG
* * * * *
18452923 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGATGGTTACAGCAGTA
517 TTGGCATAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACTAGACTGAGGGTTACAGCAGCA
** * * * *
18452988 GGACTAGCAGCAGGATCGGCAGCACGTAGAGGGGATCGAGACGATCCCTGGCTTGCTGATTCTGC
582 GGACTAGCAGCAGGATCGGCAGCACACAGAGGGGATCGAGACGATCCCCGACTTACTGATTATGC
**
18453053 CTCTCCGGCCAGCCTCTCCGGCCTGCTGAGTGCCC
647 CTCTCCGGCCAGCCTCTCCGGCCTGCTGAGCACCC
* * * * *
18453088 ACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATA-GAAGTTTATCCCCAGTCTAAGCATACGGAGTT
* * * * * *
18453153 CATTCCCAGTCTAAGATCGGACCA-AACCGAGGATTGTGGCAGCAGGATCGATAGCACGCAAGGG
65 CATTCCCAGTCTAAGAACGGA-TAGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGG
* * ** * *
18453217 GGACTGGGCCGATCCCTGACTTTTGCATTCTGCCTCTCTGATCGACTGAGCTCCCGCATGCTCGT
129 GGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGACTGAGCGCCCGCACGC-CGT
* *
18453282 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGGGTTG
193 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC-GAGGGTTG
** * *
18453347 TGGCAGCAAGATCGACAGCGAGATCGGCAGCATACAGAGGGTTACCGAGTTGATCGCCGGCTTGC
257 TGGCAGCAAGATCGACAGC---A-C-GCAG-A-A-A-A-GG--ACCGAGCCGATCCCCGACTTGC
* * * * * * *
18453412 GCATTATGCCTTTTCGATCGGTTGAGCGCCC-ACACGATCGTTTCATGGGTTGACTTAGGCATAT
310 GCATTATGCCTCTCCGATCGGCTCAGCGCCCGA-ACGATCATTTCATGGGTTAACTTAGGCATAC
* * * *
18453476 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACAC
374 GAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACAC
* * * *
18453541 AGGGGGGACCGAGCT-GGTCCCCGGCCTACGCATTCTGCCTCTTCG-GCTAGCTGAGCGCCCGCA
439 AGGGGGGACCG-GCTCAGTCCCCGGCCTACACATTCTGCCTCTCCGATC-AGCTGAGCGCCCGCA
* * * ** * * *
18453604 CGCCCGTTTCGTGGGTTGGCATAGGCGTAGGGAGTTCATT-CCACGTCTAAGCCCCAGTC-GGAC
502 CGCCCGTTTCATAGGTTGGCATAGGCATACAGAGTTCATTCCCA-GTCTAAG-ACCAGACTAGAC
*** * * * **
18453667 TGAGGGTTGTGGTAGCAGGACCTA-CAGC-GAGATCGGTAGCACACAGAGGGGGA-CTGGGTTGA
565 TGAGGGTTACAGCAGCAGGA-CTAGCAGCAG-GATCGGCAGCACACAGA-GGGGATC-GAGACGA
* * * *
18453729 TCCCCGACTTAC-GCATTATGCCTCTCCTGTCGGCCTCTGCGG-CTGGCTGAGCACCC
626 TCCCCGACTTACTG-ATTATGCCTCTCCGGCCAGCCTCTCCGGCCT-GCTGAGCACCC
* *
18453785 GCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTTATCCCTAATCTAAGCATACGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATA-GAAGTTTATCCCCAGTCTAAGCATACGGAGTT
* * * * *
18453850 CATTCCTAGTCTAAGAACGGTTTGAATCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGGGGG
65 CATTCCCAGTCTAAGAACGGATAGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGG
* ** ** *
18453915 GACCGGGCTGAT-TTTCGGCTTACGCATTCTGCCTCTCTGGCCGACAGAGCGCCCGCACGTCCGT
130 GACCGGGCCGATCCCT-GGCTTACGCATTCTGCCTCTCTGATCGACTGAGCGCCCGCACG-CCGT
*
18453979 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACGAAGGGTTG
193 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACG-AGGGTTG
** ** * *** * * *
18454044 TGGCAGTGAGA-CTGGTAGCACGTAGAGGGGGACCGGGCC-AGTCCCCGACTTGCACACTATGCC
257 TGGCAGCAAGATC-GACAGCACGCAGAAAAGGACCGAGCCGA-TCCCCGACTTGCGCATTATGCC
** * * * ** * * * * *
18454107 TCT-TTAGTCGGCTCAGCACCCGCACGCTTGTTTCATGGTTTGACTTATGCATACAAAATTCATT
320 TCTCCGA-TCGGCTCAGCGCCCGAACGATCATTTCATGGGTTAACTTAGGCATACGAAGTTCATT
* * * * * * * *
18454171 CCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACCCAGAGGGGATC
384 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGACC
* * * * * * * * * * * * *
18454236 GGATC-GATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCACCCACACACTCATTTCG
449 GGCTCAG-TCCCCGGCCTACACATTCTGCCTCTCCGATCAGCTGAGCGCCCGCACGCCCGTTTCA
* * *
18454300 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
513 TAGGTTGGCATAGGCATACAGAGTTCATTCCCA-GTCTAAG
18454340 CATACGAAGT
Statistics
Matches: 1013, Mismatches: 201, Indels: 75
0.79 0.16 0.06
Matches are distributed among these distances:
683 2 0.00
684 237 0.23
685 206 0.20
686 1 0.00
687 3 0.00
688 1 0.00
689 4 0.00
690 1 0.00
691 2 0.00
692 4 0.00
693 2 0.00
694 3 0.00
695 6 0.01
696 251 0.25
697 289 0.29
698 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (681 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATAGAAGTTTATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGAACGGATAGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGG
ACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGACTGAGCGCCCGCACGCCGTTTC
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACGAGGGTTGTGGC
AGCAAGATCGACAGCACGCAGAAAAGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCG
ATCGGCTCAGCGCCCGAACGATCATTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTC
TAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGACCGGCTCAG
TCCCCGGCCTACACATTCTGCCTCTCCGATCAGCTGAGCGCCCGCACGCCCGTTTCATAGGTTGG
CATAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACTAGACTGAGGGTTACAGCAGCAGGAC
TAGCAGCAGGATCGGCAGCACACAGAGGGGATCGAGACGATCCCCGACTTACTGATTATGCCTCT
CCGGCCAGCCTCTCCGGCCTGCTGAGCACCC
Found at i:18454350 original size:26 final size:26
Alignment explanation
Indices: 18454313--18454365 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18454303 GTTGGCTTAG
*
18454313 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
18454339 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18454365 G
1 G
18454366 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18454587 original size:514 final size:512
Alignment explanation
Indices: 18453937--18455049 Score: 1334
Period size: 514 Copynumber: 2.2 Consensus size: 512
18453927 TTTCGGCTTA
* * * *
18453937 CGCATTCTGCCTCTCTGGCC-GACAGAGCGCCCGCACG-TCCGTTTCGTGGGTTGGCTTAGGCAT
1 CGCATTCTGCCTCTCCGACCAG-CTGAGCACCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCAT
* * * *
18454000 AGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACGAAGGGTTGTGGCAGTGAGACTGGTAGCAC
64 ACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACGAAGGGTTGTGGCAGCGAGACTGGCAGCAC
* * * * *
18454065 GTAGAGGGGGACCGGGCCAG-TCCCCGACTTGCACACTATGCCTCTTTAG-TCGGCTCAGCACCC
129 GCAGAGGGGGACCGGG-CAGATCCCCGACTTGCACACTATGCCTC-TCAGACCGGCGCAACACCC
* * *
18454128 GCACGCTTGTTTCATGGTTTGACTTATGCATACAAAATTCATTCCCAGTCTAAGATCGGATCGGA
192 GCACGCTTGTTTCATGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGATCGGATCAGA
* * *
18454193 CCGAGGGTTG-CGACAGTAGGATCGACAGCACCCAGAGGGGATCG-GATCGAT-CCTCGGCTTAC
257 CCGAGGGTTGTAGACA-CAGGATCGACAGCACCCAGAGGGGACCGAG-TCGATACC-CGGCTTAC
** *
18454255 GCATTCTGCCTCTCCGGTCGGTTGAGCACCCACACACTCATTTCGTGGGTTGGCTTAGGCATACG
319 GCATTCTGCCTCTCCGACCGGTTGAACACCCACACACTCATTTCGTGGGTTGGCTTAGGCATACG
* *
18454320 GAGTTCATTCCATGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAA-
384 GAGTTCATTCCATGTCTAAGCATACAG-AGTTCATTCCCAATCTAAGATCAGATC-GGACT-AAG
* * * * * * *
18454382 GGTTGCTGCCGTAGGACCAGTAAC-AGGATTAG-CAGTACGTAGGGGAGGATTAGGTCGATCCTC
446 GGTTGCGGCAGCAAGACCAGT-ACTAGGA-TAGACAGCACGTAGGGG-GG-TCAGGTCGATCCCC
18454445 GACTTG
507 GACTTG
* * * *
18454451 CGCATTCTGCCTCTCCGCCCAGTTGAGCTCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
18454516 GGAGTTCAATCCATGTCTAAGCCCCAGTCAGACTG-AGGGTTGTGGCAGCGAGACTGGCAGCATG
66 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC-GAAGGGTTGTGGCAGCGAGACTGGCAGCACG
* * * * * * * ** *
18454580 CAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCGCAATGCCTGCA
130 CAGAGGGGGACCGGGCAGATCCCCGACTTGCACACTATGCCTCTCAGACCGGCGCAACACCCGCA
* * * * *
18454645 CGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAATATCGGATCAGACCG
195 CGCTTGTTTCATGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGATCGGATCAGACCG
* * ** *
18454710 ATGGTTGTAGTCACAGGATCGACAGCACGTAGGGGGGACCGAGTCGATACCCGGCTTACGCATTC
260 AGGGTTGTAGACACAGGATCGACAGCACCCAGAGGGGACCGAGTCGATACCCGGCTTACGCATTC
** * * *
18454775 TGCCTCTCCGACCGGTTGAATGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
325 TGCCTCTCCGACCGGTTGAACACCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * *
18454840 ATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGAGTAAGGGTTGGGGT
390 ATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACTAAGGGTTGCGGC
* * *
18454905 AGCAAGTCCAGTACTAGGATCGATAGCACGTAGGGGGGTCAGGTCGATCCCCGACTTG
455 AGCAAGACCAGTACTAGGATAGACAGCACGTAGGGGGGTCAGGTCGATCCCCGACTTG
* ** * * *
18454963 CGCATTCTGCCTCTCTGACTGGCTGAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
18455028 GGAGTTCATTCCATGTCTAAGC
66 GGAGTTCATTCCATGTCTAAGC
18455050 ATACGGAGTT
Statistics
Matches: 509, Mismatches: 77, Indels: 28
0.83 0.13 0.05
Matches are distributed among these distances:
512 94 0.18
513 12 0.02
514 392 0.77
515 11 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (512 bp):
CGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGTCAGACGAAGGGTTGTGGCAGCGAGACTGGCAGCACGC
AGAGGGGGACCGGGCAGATCCCCGACTTGCACACTATGCCTCTCAGACCGGCGCAACACCCGCAC
GCTTGTTTCATGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGATCGGATCAGACCGA
GGGTTGTAGACACAGGATCGACAGCACCCAGAGGGGACCGAGTCGATACCCGGCTTACGCATTCT
GCCTCTCCGACCGGTTGAACACCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACTAAGGGTTGCGGCA
GCAAGACCAGTACTAGGATAGACAGCACGTAGGGGGGTCAGGTCGATCCCCGACTTG
Found at i:18454877 original size:26 final size:26
Alignment explanation
Indices: 18454827--18454879 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18454817 GTTGGCTTAG
* *
18454827 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
18454853 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
18454879 G
1 G
18454880 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:18455052 original size:26 final size:26
Alignment explanation
Indices: 18455022--18455074 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18455012 GTTGGCTTAG
18455022 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
18455048 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18455074 G
1 G
18455075 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18455061 original size:195 final size:196
Alignment explanation
Indices: 18454724--18455076 Score: 541
Period size: 195 Copynumber: 1.8 Consensus size: 196
18454714 TTGTAGTCAC
* *
18454724 AGGATCGACAGCACGTAGGGGGGACCGAGTCGATACCCGGCTTACGCATTCTGCCTCTCCGACCG
1 AGGATCGACAGCACGTAGGGGGGACAGAGTCGATACCCGACTTACGCATTCTGCCTCTCCGACCG
* * *
18454789 GTTGAATGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTGAATGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
18454854 CATACAGAGTTCATTCCCAATCTAAGATCAGATCGGAGTAAGGGTTGGGGTAGCAAGTCCAGTAC
131 CATACAGAGTTCATTCCCAATCTAAGATCAGATCGGAGTAAGGGTTGGGGTAGCAAGTCCAGTAC
18454919 T
196 T
* * * * * *
18454920 AGGATCGATAGCACGTAGGGGGGTCAG-GTCGATCCCCGACTTGCGCATTCTGCCTCTCTGACTG
1 AGGATCGACAGCACGTAGGGGGGACAGAGTCGATACCCGACTTACGCATTCTGCCTCTCCGACCG
18454984 GCTG-A-GCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 GCTGAATGC-CC-GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
18455047 AGCATACGGAGTTCATTCCTAGTCTAAGAT
129 AGCATACAGAGTTCATTCCCAATCTAAGAT
18455077 TTTGAGCCGC
Statistics
Matches: 141, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
193 2 0.01
194 3 0.02
195 112 0.79
196 24 0.17
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
AGGATCGACAGCACGTAGGGGGGACAGAGTCGATACCCGACTTACGCATTCTGCCTCTCCGACCG
GCTGAATGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACAGAGTTCATTCCCAATCTAAGATCAGATCGGAGTAAGGGTTGGGGTAGCAAGTCCAGTAC
T
Found at i:18456780 original size:672 final size:669
Alignment explanation
Indices: 18455488--18457414 Score: 2343
Period size: 672 Copynumber: 2.9 Consensus size: 669
18455478 ACCACCCGTT
* ** * * ** *
18455488 TGATCCCCGGTTTGCCCATCCTGCCTCTCTGGTCGGCTGAGCGCCTGCACGCTCATTTTGTGGGT
1 TGATCCCCGGCTTGAACATCATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTTGTGGGT
* * * * *
18455553 TCACTTAGGCATTCGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCTCAGTCTAAGATTA
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTA
* * * ** *
18455618 GACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATTGGGTCGATCCCCGGC
131 GACCGGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGGGGGACCGAGTCGATCCCCGGC
* * * * * * * *
18455683 TTATGCATTCTGCCTGTCCGACCGACTGAGCACCTGTACGCCCATTTTGTGGGTTGGCTTAGGCA
196 TTACGCATTCTACCTGTTCGACCGACTGAGCGCCCGTACGACCGTTTCGTGGGTTGGCTTAGGCA
**
18455748 TAGGGAGTTCATTCCATGTCTAA-GCCCTAGTCAGACCGAGGGTTGTGGCAGTAGGACCGACAGC
261 TAGGGAGTTCATTCCATGTCTAAGGCCC-AGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAGC
* * * * * * * *
18455812 ACGAAAAGAGAGATCGAGCCAATCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTCAGCGCCC
325 ACGAAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGG-CG-CTCAGTGCCC
* * * *
18455877 GTACGCTCATTTCATGGGTTGACTTAGGTATACCGAGTTCATTCCCAGTATAAGATTAGACTGGA
388 GTAC-CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGACTGGA
** * ** * * **
18455942 CTGAGGGTTGCAACAGCAGGATCGGTAGCACGTAGGGGGGACCAGG-TCGATCCCCGACTTGTAC
452 CTGAGGGTTGCGGCAGCAGCATCGACAGCACGTAGGGGGGATCAGGCT-GATCCCCGGCTTGCGC
* * * *
18456006 ATTTTGCCTCTCCG-GCAGGCTGAGCTCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGTATACGG
516 ATTCTGCCTCTCCGATC-GGCTGAGCTCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGTATACGG
* * * *
18456070 AGTTCATTCCACGTCTAAGCCCCAACCGAACAGAGGGTTTTGGCAGCAGGATCGGTAGCAGGATC
580 AGTTCATTCCATGTCTAAGCCCCAACCGAACAGAGGGTTGTGGCAGCAGGATCGATAGCAAGATC
* ***
18456135 GACAGCACTCAGAGGGGGATTGGGC
645 GACAGCACGCAGAGGGGGACCAGGC
* * **
18456160 TGATCCCCGGCTTGAGCATCATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
1 TGATCCCCGGCTTGAACATCATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTTGTGGGT
* * * *
18456225 TGACTTAGGCATACGAAGTTCATCCCTAGTTTAAGCATACGGAGTTCATTCCCATTCTAAGATT-
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTA
* * * * * * *
18456289 GAACCGGACTGAGGTTTACGACAGTAGGATCGGCAACACGTAAGGGGGACCGAGTCGATCCCCAG
131 G-ACCGGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGGGGGACCGAGTCGATCCCCGG
* * *
18456354 CTTACGCATTCTACCTGTTCGGCCGGCTGAGCGCCCGTACGTCCGTTTCGTGGGTTGGCTTAGGC
195 CTTACGCATTCTACCTGTTCGACCGACTGAGCGCCCGTACGACCGTTTCGTGGGTTGGCTTAGGC
* * *
18456419 ATAGGGAGTTCATTCCATGTCTAAGGCCCAGTCAAATCGAGGGTTGTGGCAACGGGACCGACAGC
260 ATAGGGAGTTCATTCCATGTCTAAGGCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAGC
18456484 ACGAAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCAGCTCAGTGCCC
325 ACGAAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGG-C-GCTCAGTGCCC
* *
18456549 GTAACCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTATAAGATCAAACTGGA
388 GT-ACCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGACTGGA
* *
18456614 CTGAGCGTTGCGGCAGCAGCATCGACAGCACGTAGGGGGGATCAGGCTGATCCCCGGCTTACGCA
452 CTGAGGGTTGCGGCAGCAGCATCGACAGCACGTAGGGGGGATCAGGCTGATCCCCGGCTTGCGCA
* * * * *
18456679 TTCTGCCTCTCCGATCGGCTGAGTTCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACAGAG
517 TTCTGCCTCTCCGATCGGCTGAGCTCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAG
* ** * * *
18456744 TTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCAGGATCGATAGCAAGATCGA
582 TTCATTCCATGTCTAAGCCCCAACCGAACAGAGGGTTGTGGCAGCAGGATCGATAGCAAGATCGA
18456809 CAGCACGCAGAGGGGGACCAGGC
647 CAGCACGCAGAGGGGGACCAGGC
*
18456832 TGATCCCCGGCTTGAACATCATGCCTCTCCGACCGGCTAAGCGCCCGCACGCTCATTTTGTGGGT
1 TGATCCCCGGCTTGAACATCATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTTGTGGGT
* * *
18456897 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTA
* * * *
18456962 GATCGGACCGAGGGTTGTGGCAGTAGGATCGGTAGCACGCAGGGGGGACC-AGGTCGAT-CCCGG
131 GACCGGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGGGGGACCGA-GTCGATCCCCGG
* * * * * * *
18457025 CTTGCGCATT-TTCCT-CTCTGATCGACGGAGCGCCCGCAC-ACCTGTTTCATGGGTTGGCTTAG
195 CTTACGCATTCTACCTGTTC-GACCGACTGAGCGCCCGTACGACC-GTTTCGTGGGTTGGCTTAG
* ** * * *
18457087 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCGGGACCGGCA
258 GCATAGGGAGTTCATTCCATGTCTAAGGCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACA
* * *
18457152 GCACGTAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCT-T--CG----GT---C
323 GCACGAAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGGCGCTCAGTGCCC
* * * * * * *
18457207 G--GCTCATTT-GTGAGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGAC
388 GTACCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGACTGGAC
* * * * * * *
18457269 CGAGGGTTGCGGCAGTAGTATCGACAACACGTA-GGTGGATCAGGCTGATTCCCAGCTTGCGCAT
453 TGAGGGTTGCGGCAGCAGCATCGACAGCACGTAGGGGGGATCAGGCTGATCCCCGGCTTGCGCAT
*
18457333 TCTGCCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGT
518 TCTGCCTCTCCGATCGGCTGAGCTCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGT
18457398 TCATTCCATGTCTAAGC
583 TCATTCCATGTCTAAGC
18457415 ATACGGAGGT
Statistics
Matches: 1079, Mismatches: 166, Indels: 39
0.84 0.13 0.03
Matches are distributed among these distances:
653 103 0.10
654 73 0.07
655 7 0.01
658 2 0.00
661 2 0.00
665 1 0.00
666 1 0.00
669 5 0.00
670 139 0.13
671 15 0.01
672 721 0.67
673 10 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (669 bp):
TGATCCCCGGCTTGAACATCATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTTGTGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTA
GACCGGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGGGGGACCGAGTCGATCCCCGGC
TTACGCATTCTACCTGTTCGACCGACTGAGCGCCCGTACGACCGTTTCGTGGGTTGGCTTAGGCA
TAGGGAGTTCATTCCATGTCTAAGGCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCA
CGAAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGGCGCTCAGTGCCCGTA
CCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGACTGGACTGA
GGGTTGCGGCAGCAGCATCGACAGCACGTAGGGGGGATCAGGCTGATCCCCGGCTTGCGCATTCT
GCCTCTCCGATCGGCTGAGCTCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCA
TTCCATGTCTAAGCCCCAACCGAACAGAGGGTTGTGGCAGCAGGATCGATAGCAAGATCGACAGC
ACGCAGAGGGGGACCAGGC
Found at i:18456790 original size:158 final size:157
Alignment explanation
Indices: 18456345--18456932 Score: 502
Period size: 158 Copynumber: 3.6 Consensus size: 157
18456335 GGACCGAGTC
* * * * * *
18456345 GATCCCCAGCTTACGCATTCTACCTGTTCGGCCGGCTGAGCGCCCGTACG-TCCGTTTCGTGGGT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCT-CATTTCGTGGGT
* ** ** * * *
18456409 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGTCAAATCGAGGGTTGTGGCAACGG
65 TGACTTAGGCATACAGAGTTCATTCCA-GTCTAA-GCCCAGTCGGACCGAGGGTTGTGGCAGCAG
* * * *
18456474 GACCGACAGCACGAAGAGGGGGATCGGGCC
128 CATCGACAGCACGAAGAGGGGGATCAGGCT
* * * * * * *
18456504 GATCCCCGGCTTGCGCATTATGCCTCTCTGGCCAGCTCAGTGCCCGTAAC-CTCATTTCGTGGGT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGT-ACGCTCATTTCGTGGGT
* * ** ** * * *
18456568 TGACTTAGGCATACAGAGTTTATTCCCAGTATAAGATCAAACTGGACTGAGCGTTGCGGCAGCAG
65 TGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCCCAGTC-GGACCGAGGGTTGTGGCAGCAG
*
18456633 CATCGACAGCACGTAG-GGGGGATCAGGCT
128 CATCGACAGCACGAAGAGGGGGATCAGGCT
* ** *
18456662 GATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGTTCCCGTACGCTCATTTTGTGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTT
*
18456727 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCAGG
66 GACTTAGGCATACAGAGTTCATTCCA-GTCTAAGCCC-AGTCGGACCGAGGGTTGT-G--GCA-G
* *
18456792 ATCGATAGCAAGATCGACAGCACGCAGAGGGGGACCAGGCT
125 --C---AGC---ATCGACAGCACGAAGAGGGGGATCAGGCT
* * * *
18456833 GATCCCCGGCTTGA-ACA-TCATGCCTCTCCGACCGGCTAAGCGCCCGCACGCTCATTTTGTGGG
1 GATCCCCGGCTT-ACGCATTC-TGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCATTTCGTGGG
* *
18456896 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
64 TTGACTTAGGCATACAGAGTTCAT-TCCAGTCTAAGC
18456933 ATATGGAGTT
Statistics
Matches: 343, Mismatches: 63, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
157 5 0.01
158 107 0.31
159 103 0.30
160 6 0.02
161 3 0.01
162 1 0.00
164 1 0.00
167 3 0.01
170 16 0.05
171 94 0.27
172 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTT
GACTTAGGCATACAGAGTTCATTCCAGTCTAAGCCCAGTCGGACCGAGGGTTGTGGCAGCAGCAT
CGACAGCACGAAGAGGGGGATCAGGCT
Found at i:18456941 original size:26 final size:26
Alignment explanation
Indices: 18456905--18456957 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18456895 GTTGACTTAG
18456905 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
18456931 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18456957 G
1 G
18456958 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18457418 original size:26 final size:26
Alignment explanation
Indices: 18457389--18457439 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18457379 TGGCTTAGGT
*
18457389 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGGTCATTCCCA-GTCTAAGC
18457415 ATACGGAGGTCATTCCCAGTCTAAG
1 ATACGGAGGTCATTCCCAGTCTAAG
18457440 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGGTCATTCCCAGTCTAAGC
Found at i:18458139 original size:26 final size:26
Alignment explanation
Indices: 18458109--18458161 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18458099 GTTGACTTTG
18458109 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18458135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18458161 G
1 G
18458162 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18458348 original size:26 final size:26
Alignment explanation
Indices: 18458318--18458367 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18458308 GTTGACTTAG
18458318 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* * *
18458344 GCATATAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTAATCCCCAGTCT
18458368 GAGATCGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:18460057 original size:26 final size:26
Alignment explanation
Indices: 18460027--18460079 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18460017 GTTGGCTTAG
18460027 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18460053 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18460079 G
1 G
18460080 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18460260 original size:26 final size:26
Alignment explanation
Indices: 18460223--18460275 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18460213 GTTGACTTAG
*
18460223 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
18460249 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18460275 G
1 G
18460276 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18460296 original size:196 final size:196
Alignment explanation
Indices: 18459945--18460297 Score: 487
Period size: 196 Copynumber: 1.8 Consensus size: 196
18459935 CACGTAGTGT
* * * *
18459945 GGACCAGGCCGATCCCTGACTTGCGCATTTTGCCTTTCCGATCGGCTGAGCACCCGCACGCTCGT
1 GGACCAGGCCGATCCCTGACTTACGCATTCTGACTTTCCGATCGGCTGAACACCCGCACGCTCGT
* * * *
18460010 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGT
66 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGT
** * * *
18460075 CTAAGATCGGATCGGATCAAGGGTTGCGGTAATAGGACCAGTAGCAGGATCAGCAGCATGTAGGG
131 CTAAGATCAAACCAGACCAAGGGTTGCGGTAATAGGACCAGTAGCAGGATCAGCAGCATGTAGGG
18460140 G
196 G
* **
18460141 GGACCGGGCCGAT-CCTCGACTTACGCATTCTGACTCTT-CGATCGGCTGAATGCCCGCACGCTC
1 GGACCAGGCCGATCCCT-GACTTACGCATTCTGACT-TTCCGATCGGCTGAACACCCGCACGCTC
* *
18460204 GTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCT
64 GTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGAAGTTCATTCCC
*
18460268 AGTCTAAGATCAAACCAGACCGAGGGTTGC
128 AGTCTAAGATCAAACCAGACCAAGGGTTGC
18460298 AGCTACAGGA
Statistics
Matches: 135, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
195 3 0.02
196 127 0.94
197 5 0.04
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (196 bp):
GGACCAGGCCGATCCCTGACTTACGCATTCTGACTTTCCGATCGGCTGAACACCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGT
CTAAGATCAAACCAGACCAAGGGTTGCGGTAATAGGACCAGTAGCAGGATCAGCAGCATGTAGGG
G
Found at i:18460604 original size:26 final size:26
Alignment explanation
Indices: 18460565--18460617 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18460555 GTTGGCTGAG
18460565 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
18460591 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18460617 G
1 G
18460618 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18461984 original size:184 final size:186
Alignment explanation
Indices: 18461624--18461995 Score: 450
Period size: 184 Copynumber: 2.0 Consensus size: 186
18461614 CGTGGGTTGA
* *
18461624 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTACGACAGCAGGAT
1 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTACGACAGCAGGAC
* ** * *
18461689 CAACAACATGCAGAGGGGGACCAAGTCGGTCCCCGACTTGCGCATTCTGCCTCTTCAACCGGCTG
66 CAACAACACGCAGAGGGGGACCAAGTCAATCCCCGACTTGCGCATTCTGCCTCCTCAACCGACTG
* ** *
18461754 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
131 AGCGCCCGCACGCTCACTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *** * *
18461810 CTTA-GCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACCGAGGGTTGC-AGCAGCAGGA
1 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTACGA-CAGCAGGA
* * * * * *
18461873 CCAACAGCACGCA-AGGGGGGACC-AGGCTAAT-CTCGACTTGTGCATTCTGTCTCC-CTGACCG
65 CCAACAACACGCAGA-GGGGGACCAAGTC-AATCCCCGACTTGCGCATTCTGCCTCCTC-AACCG
*
18461934 ACTGAGCGCCCGCACGCTCACTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGT
127 ACTGAGCGCCCGCACGCTCACTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
18461994 CT
1 CT
18461996 AAGCCCCAGT
Statistics
Matches: 158, Mismatches: 24, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
183 1 0.01
184 84 0.53
185 69 0.44
186 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.23
Consensus pattern (186 bp):
CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTACGACAGCAGGAC
CAACAACACGCAGAGGGGGACCAAGTCAATCCCCGACTTGCGCATTCTGCCTCCTCAACCGACTG
AGCGCCCGCACGCTCACTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
Found at i:18462171 original size:26 final size:26
Alignment explanation
Indices: 18462142--18462194 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18462132 TTTGACTTAG
*
18462142 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
18462168 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
18462194 G
1 G
18462195 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:18462296 original size:354 final size:355
Alignment explanation
Indices: 18461718--18462499 Score: 790
Period size: 354 Copynumber: 2.2 Consensus size: 355
18461708 ACCAAGTCGG
* * * * * * *
18461718 TCCCCGACTTGCGCATTCTGCCTCTTCAACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGG
1 TCCCCGACTTGCACATTATGCCTCTCCAACCGACTGAGCGCCCGTACGCTCATTTCGTGCGTTGA
* * * *
18461783 CTTAGGCATACGGAGTTCATTCCATGTCTTAGCATACGGAGTTCATTCCCAATCTAAGATTGGAT
66 CTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGAAC
* * *
18461848 CAGACCGAGGGTTGCAGCAGCAGGACCAACAGCACGCAAGGGGGGACCAGGCTAATCTCGACTTG
131 CAGACCGAGGGTTACAGCAGCAAGACCAACAGCACGCAAGGGGGGACCAGGCTAATCTCGACTTA
* * * * * *
18461913 TGCATTCTGTCTCCCTGACCGACTGAGCGCCCGCACGCTCACTTCATGGGTTGGCTTAGGCATAT
196 CGCATTCTGACTCCCTGACCGACTGAGCGCCCGCACACCCACTTCATGAGTTGGCTTAGGCATAG
*
18461978 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCAGGACCGATTGTGGGA
261 GGAATTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCAGGACCGATTGTGGGA
18462043 TCGACAGCACGCAGAGAGGGACCGGGCTGA
326 TCGACAGCACGCAGAGAGGGACCGGGCTGA
* * *
18462073 TCCCC-ACTTGCACATTATGCCTCTCCGACTGACTGAGCGCCCGTACGCTCATTTCGTGCTTTGA
1 TCCCCGACTTGCACATTATGCCTCTCCAACCGACTGAGCGCCCGTACGCTCATTTCGTGCGTTGA
18462137 CTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGAA
66 CTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGAA
* * * * * ** * * *** * *
18462201 CCAGATCGATGGTTACGGTAGCAAGATCAGTAGCATG-TAGGGGGGATTGGGCTGATCTTCGGCT
130 CCAGACCGAGGGTTACAGCAGCAAGACCAACAGCACGCAAGGGGGGACCAGGCTAATC-TCGACT
* * ** * ** * *
18462265 TACGCATTCT-ACTGGTCC-GATCGGTTGAGCGCCCGTACACCCGTTTCGTGATTTGGCTTAGGC
194 TACGCATTCTGACT--CCCTGACCGACTGAGCGCCCGCACACCCACTTCATGAGTTGGCTTAGGC
** * * *
18462328 ATAGGGAATTCATTCCATGTCTAAGCCCCAACCAGA-CTGAGGGTTGTGGCAG-TGG---GA-T-
257 ATAGGGAATTCATTCCATGTCTAAGCCCCAGTCGGATC-GAGGGTTGTGGTAGCAGGACCGATTG
* * * * *
18462386 TGGCAGC-ACA-TA-G-A-AG-GGGACCGAGCCGA
321 TGGGATCGACAGCACGCAGAGAGGGACCGGGCTGA
* * * * * * * * *
18462415 TCCCCGACGTGCGCATTATGCCTCTCCAGCCGACTCAGTGCCCGAACGCTCGTTTCGTGGGTTGT
1 TCCCCGACTTGCACATTATGCCTCTCCAACCGACTGAGCGCCCGTACGCTCATTTCGTGCGTTGA
*
18462480 CTTAGGCATACAGAGTTCAT
66 CTTAGGCATACGGAGTTCAT
18462500 TCTCAGTCTA
Statistics
Matches: 351, Mismatches: 70, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
342 16 0.05
343 68 0.19
344 1 0.00
345 1 0.00
346 1 0.00
347 3 0.01
348 5 0.01
349 1 0.00
350 2 0.01
353 20 0.06
354 223 0.64
355 10 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (355 bp):
TCCCCGACTTGCACATTATGCCTCTCCAACCGACTGAGCGCCCGTACGCTCATTTCGTGCGTTGA
CTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGAAC
CAGACCGAGGGTTACAGCAGCAAGACCAACAGCACGCAAGGGGGGACCAGGCTAATCTCGACTTA
CGCATTCTGACTCCCTGACCGACTGAGCGCCCGCACACCCACTTCATGAGTTGGCTTAGGCATAG
GGAATTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCAGGACCGATTGTGGGA
TCGACAGCACGCAGAGAGGGACCGGGCTGA
Found at i:18462882 original size:26 final size:26
Alignment explanation
Indices: 18462853--18462905 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18462843 GTTGACTTAG
18462853 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
18462879 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18462905 G
1 G
18462906 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18464225 original size:60 final size:57
Alignment explanation
Indices: 18464096--18464497 Score: 473
Period size: 60 Copynumber: 6.7 Consensus size: 57
18464086 TTTTGTGCAG
* * * *
18464096 GGAAAATTGATACTTTCAACTTTTCTCTAAAAATATTTTTTTTGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATA-TTTTTTTGAAAATTTATTTTCAA
*
18464155 GGAAAATTGATACTTTCAACTTTTCCGCAAAAATTGATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAA-T-ATTTTTTTGAAAATTTATTTTCAA
*
18464215 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTT-GAAA-ATTTATTTTCAA
** *
18464275 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGAAAATTTATTTTCAA
* *
18464333 GGAAAATTGATAC-TTCAACTTTTCTCTAAAAATATTTGTTTTGGAAAATTTTGATCTTCAA
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATATTT-TTTT-GAAAA-TTT-ATTTTCAA
* * * * *
18464394 GGAAAATTGATACTTTCAACTTTTCCTAAAAAAAAACCCTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC--CAAAAATA--TTTTTTTGAAAATTTATTTTCAA
18464455 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTCTTTTT
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATATT-TTTTT
18464498 TGATTTTTAT
Statistics
Matches: 299, Mismatches: 25, Indels: 38
0.83 0.07 0.10
Matches are distributed among these distances:
57 19 0.06
58 38 0.13
59 51 0.17
60 106 0.35
61 54 0.18
62 15 0.05
63 10 0.03
64 4 0.01
65 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAAATTTATTTTCAA
Found at i:18464315 original size:119 final size:118
Alignment explanation
Indices: 18464096--18464497 Score: 592
Period size: 119 Copynumber: 3.4 Consensus size: 118
18464086 TTTTGTGCAG
* * * *
18464096 GGAAAATTGATACTTTCAACTTTTCTCTAAAAATATTTTTTTTGAAAC-TTTAATTTCGAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTTGGAAACTTTTATTTTCAAGGAAA
* **
18464160 ATTGATACTTTCAACTTTTCCGCAAAAATTGATTTTTTTGAAAATTTATTTTTAA
66 ATTGATACTTTCAACTTTTCCTCAAAAA--CCTTTTTTTGAAAATTTATTTTTAA
*
18464215 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTTATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTTGGAAACTTTTATTTTCAAGGAAA
18464280 ATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTATTTTTAA
66 ATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTATTTTTAA
* * *
18464333 GGAAAATTGATAC-TTCAACTTTTCTCTAAAAATATTTGTTTTGGAAAATTTTGATCTTCAAGGA
1 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTT-TTTTGGAAACTTTT-ATTTTCAAGGA
* * *
18464397 AAATTGATACTTTCAACTTTTCCTAAAAAAAAACCCTTTTTTGAAATTTTATTTTTAA
64 AAATTGATACTTTCAACTTTTCCT---CAAAAACCTTTTTTTGAAAATTTATTTTTAA
18464455 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTCTTTTT
1 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATT-TTTTT
18464498 TGATTTTTAT
Statistics
Matches: 259, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
117 22 0.08
118 49 0.19
119 79 0.31
120 41 0.16
122 41 0.16
123 26 0.10
124 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTTGGAAACTTTTATTTTCAAGGAAA
ATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTATTTTTAA
Found at i:18464398 original size:179 final size:178
Alignment explanation
Indices: 18464096--18464500 Score: 518
Period size: 179 Copynumber: 2.2 Consensus size: 178
18464086 TTTTGTGCAG
* * *
18464096 GGAAAATTGATACTTTCAACTTTTCTCTAAAAATATTTTTTTTGAAACTTTAATTTCGAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCTC-AAAAATACTTTTTTTGAAAATTTAATTTCAAGGAAAA
* *
18464161 TTGATACTTTCAACTTTTCCGCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
65 TTGATACTTTCAACTTTTCCGCAAAAATTGATTTTTTTGAAAATTTATCTTCAAGGAAAATTGAT
** * *
18464226 ACTTTCAACTTTTCC-CCAAAAATA-TTTTTTTGGAAACTTTTATTTTCAA
130 ACTTTCAACTTTTCCTAAAAAAAAACCTTTTTT-GAAA-TTTTATTTTCAA
* * *
18464275 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTGAAAATTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTT-CTCAAAAATACTTTTTTTGAAAATTTAATTTCAAGGAAAA
*
18464339 TTGATAC-TTCAACTTTTCTC-TAAAAA-T-ATTTGTTTTGGAAAATTTTGATCTTCAAGGAAAA
65 TTGATACTTTCAACTTTTC-CGCAAAAATTGATTT-TTTT-GAAAA-TTT-ATCTTCAAGGAAAA
*
18464400 TTGATACTTTCAACTTTTCCTAAAAAAAAACCCTTTTTTGAAATTTTATTTTTAA
125 TTGATACTTTCAACTTTTCCTAAAAAAAAA-CCTTTTTTGAAATTTTATTTTCAA
*
18464455 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTCTTTTTTGA
1 GGAAAATTGATACTTTCAACTTTTCT-CAAAAATACT-TTTTTTGA
18464501 TTTTTATTTA
Statistics
Matches: 198, Mismatches: 16, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
175 4 0.02
176 5 0.03
177 21 0.11
178 36 0.18
179 63 0.32
180 50 0.25
181 5 0.03
182 14 0.07
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (178 bp):
GGAAAATTGATACTTTCAACTTTTCTCAAAAATACTTTTTTTGAAAATTTAATTTCAAGGAAAAT
TGATACTTTCAACTTTTCCGCAAAAATTGATTTTTTTGAAAATTTATCTTCAAGGAAAATTGATA
CTTTCAACTTTTCCTAAAAAAAAACCTTTTTTGAAATTTTATTTTCAA
Found at i:18464524 original size:5 final size:5
Alignment explanation
Indices: 18464514--18464564 Score: 54
Period size: 5 Copynumber: 10.4 Consensus size: 5
18464504 TTATTTAAAG
*
18464514 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
18464563 AA
1 AA
18464565 GAAAAAGTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.08
4 4 0.10
5 26 0.67
6 2 0.05
7 4 0.10
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:18464569 original size:13 final size:13
Alignment explanation
Indices: 18464511--18464569 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
18464501 TTTTTATTTA
18464511 AAGAAAATAAAAT
1 AAGAAAATAAAAT
* *
18464524 AATAAAACAAAAT
1 AAGAAAATAAAAT
*
18464537 -A-AAAGTGAAAAT
1 AAGAAAAT-AAAAT
*
18464549 AAAAAAAATAAAAT
1 -AAGAAAATAAAAT
18464563 AAGAAAA
1 AAGAAAA
18464570 AGTAAAACCA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
11 3 0.08
12 6 0.17
13 17 0.47
14 6 0.17
15 4 0.11
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (13 bp):
AAGAAAATAAAAT
Found at i:18464604 original size:18 final size:17
Alignment explanation
Indices: 18464551--18464606 Score: 53
Period size: 18 Copynumber: 3.3 Consensus size: 17
18464541 GTGAAAATAA
18464551 AAAAAATAAAATAA-G-
1 AAAAAATAAAATAAGGT
* * *
18464566 AAAAAGTAAAACCAAGAT
1 AAAAAATAAAA-TAAGGT
18464584 AAAAAATAAAATAAAGGT
1 AAAAAATAAAAT-AAGGT
18464602 AAAAA
1 AAAAA
18464607 GGATACTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 10 0.32
16 2 0.06
18 19 0.61
ACGTcount: A:0.75, C:0.04, G:0.09, T:0.12
Consensus pattern (17 bp):
AAAAAATAAAATAAGGT
Found at i:18464638 original size:22 final size:20
Alignment explanation
Indices: 18464613--18464663 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 20
18464603 AAAAGGATAC
*
18464613 TAAATAAACCTAATCTAATAAA
1 TAAAAAAACCTAA--TAATAAA
18464635 TAAAAAAACC-AATAATAAA
1 TAAAAAAACCTAATAATAAA
18464654 -AAAAAAACCT
1 TAAAAAAACCT
18464664 GGAGCGGCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.33
19 7 0.26
21 2 0.07
22 9 0.33
ACGTcount: A:0.67, C:0.14, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAAAAAACCTAATAATAAA
Found at i:18465548 original size:16 final size:17
Alignment explanation
Indices: 18465470--18465555 Score: 58
Period size: 16 Copynumber: 5.2 Consensus size: 17
18465460 ATAAAAATCA
*
18465470 AATAA-AAAAAATAGAT
1 AATAATAAAAAATATAT
* *
18465486 AAT--TAGAAAAGATA-
1 AATAATAAAAAATATAT
18465500 AATAA-AAAAAATATTAT
1 AATAATAAAAAATA-TAT
18465517 AGGATAAATAAAAAATA-AT
1 A--AT-AATAAAAAATATAT
*
18465536 AATAATAACAAATATAT
1 AATAATAAAAAATATAT
18465553 AAT
1 AAT
18465556 TAGATAAATA
Statistics
Matches: 54, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
14 3 0.06
15 13 0.24
16 15 0.28
17 8 0.15
19 5 0.09
20 2 0.04
21 8 0.15
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.24
Consensus pattern (17 bp):
AATAATAAAAAATATAT
Found at i:18465682 original size:7 final size:7
Alignment explanation
Indices: 18465672--18465714 Score: 50
Period size: 7 Copynumber: 5.6 Consensus size: 7
18465662 ATATAGAATA
18465672 AAAAAAT
1 AAAAAAT
18465679 AAAAAAT
1 AAAAAAT
18465686 AAAAAAAAT
1 --AAAAAAT
18465695 AAAAAAT
1 AAAAAAT
18465702 AACAAAAAT
1 -A-AAAAAT
18465711 AAAA
1 AAAA
18465715 TTGGACTTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
7 17 0.53
8 2 0.06
9 13 0.41
ACGTcount: A:0.86, C:0.02, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:18465691 original size:9 final size:9
Alignment explanation
Indices: 18465671--18465714 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
18465661 AATATAGAAT
18465671 AAAAAAAT-
1 AAAAAAATA
18465679 -AAAAAATA
1 AAAAAAATA
18465687 AAAAAAAT-
1 AAAAAAATA
18465695 -AAAAAATA
1 AAAAAAATA
*
18465703 ACAAAAATA
1 AAAAAAATA
18465712 AAA
1 AAA
18465715 TTGGACTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
7 14 0.47
9 16 0.53
ACGTcount: A:0.86, C:0.02, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAAAATA
Found at i:18465692 original size:16 final size:16
Alignment explanation
Indices: 18465671--18465714 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
18465661 AATATAGAAT
18465671 AAAAAAATAAAAAATA
1 AAAAAAATAAAAAATA
18465687 AAAAAAATAAAAAATA
1 AAAAAAATAAAAAATA
*
18465703 ACAAAAATAAAA
1 AAAAAAATAAAA
18465715 TTGGACTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.86, C:0.02, G:0.00, T:0.11
Consensus pattern (16 bp):
AAAAAAATAAAAAATA
Found at i:18465884 original size:8 final size:9
Alignment explanation
Indices: 18465861--18465895 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
18465851 CAATATTTTC
18465861 ATTTTTTGAT
1 ATTTTTT-AT
*
18465871 TTTTTTTAT
1 ATTTTTTAT
18465880 ATTTTTTAT
1 ATTTTTTAT
18465889 ATTTTTT
1 ATTTTTT
18465896 TGTTTGCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:18466000 original size:42 final size:41
Alignment explanation
Indices: 18465941--18466152 Score: 257
Period size: 42 Copynumber: 5.1 Consensus size: 41
18465931 TAACCAAAGT
* * *
18465941 TCCTCTAACCAGAGGCTCAACGACTTTGAAAAAATAAATTGC
1 TCCTCTAAACAGAGGCACCACGACTTTG-AAAAATAAATTGC
* * *
18465983 TCCTCTAAATAGAGGCTCAACGACTTTGGAAAAATAAATTGC
1 TCCTCTAAACAGAGGCACCACGACTTT-GAAAAATAAATTGC
* *
18466025 TCTTCTAAACAGAGGCACCACGACTTTG-AAAGTAAATTGC
1 TCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGC
* * * *
18466065 TCATCAAAATAGAGGCACCACGACTTTTG-AAAGTAAATTGC
1 TCCTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATTGC
18466106 TCCTCTAAACAGAGGCACCACGACTTTTGAAAAAATAAATTGC
1 TCCTCTAAACAGAGGCACCACGAC-TTTG-AAAAATAAATTGC
18466149 TCCT
1 TCCT
18466153 TGACAATCAT
Statistics
Matches: 152, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
40 32 0.21
41 43 0.28
42 61 0.40
43 16 0.11
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (41 bp):
TCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGC
Found at i:18466126 original size:81 final size:82
Alignment explanation
Indices: 18465941--18466150 Score: 269
Period size: 82 Copynumber: 2.5 Consensus size: 82
18465931 TAACCAAAGT
* * * * * *
18465941 TCCTCTAACCAGAGGCTCAACGACTTTGAAAAAATAAATTGCTCCTCTAAATAGAGGCTCAACGA
1 TCCTCTAAACAGAGGCACCACGACTTTG--AAAATAAATTGCTCATCAAAATAGAGGCACAACGA
18466006 CTTTGGAAAAATAAATTGC
64 CTTTGGAAAAATAAATTGC
* * *
18466025 TCTTCTAAACAGAGGCACCACGACTTTGAAAGTAAATTGCTCATCAAAATAGAGGCACCACGACT
1 TCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCATCAAAATAGAGGCACAACGACT
* *
18466090 TTTG-AAAGTAAATTGC
66 TTGGAAAAATAAATTGC
18466106 TCCTCTAAACAGAGGCACCACGACTTTTGAAAAAATAAATTGCTC
1 TCCTCTAAACAGAGGCACCACGAC-TTTG--AAAATAAATTGCTC
18466151 CTTGACAATC
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
81 34 0.31
82 39 0.35
84 37 0.34
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.25
Consensus pattern (82 bp):
TCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCATCAAAATAGAGGCACAACGACT
TTGGAAAAATAAATTGC
Found at i:18467169 original size:8 final size:8
Alignment explanation
Indices: 18467157--18467260 Score: 93
Period size: 8 Copynumber: 12.6 Consensus size: 8
18467147 TAAGTCCTCC
*
18467157 TTTTTCAC
1 TTTTTCAT
18467165 TTTTTC-T
1 TTTTTCAT
18467172 TTTTTCAT
1 TTTTTCAT
* *
18467180 TTTTTTAA
1 TTTTTCAT
18467188 TTTTTCTAT
1 TTTTTC-AT
18467197 TTTTTCAT
1 TTTTTCAT
18467205 TTTTTCATT
1 TTTTTCA-T
*
18467214 TTTTCTCTT
1 TTTT-TCAT
*
18467223 TTTTTTAT
1 TTTTTCAT
**
18467231 TTCATCATT
1 TTTTTCA-T
*
18467240 TTTTTCCT
1 TTTTTCAT
18467248 TTTTTCAT
1 TTTTTCAT
18467256 TTTTT
1 TTTTT
18467261 TCAAGCATAG
Statistics
Matches: 76, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
7 6 0.08
8 46 0.61
9 22 0.29
10 2 0.03
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTCAT
Found at i:18467183 original size:9 final size:9
Alignment explanation
Indices: 18467171--18467263 Score: 81
Period size: 9 Copynumber: 10.9 Consensus size: 9
18467161 TCACTTTTTC
18467171 TTTTTTCAT
1 TTTTTTCAT
*
18467180 TTTTTTAAT
1 TTTTTTCAT
*
18467189 TTTTCT-A-
1 TTTTTTCAT
18467196 TTTTTTCA-
1 TTTTTTCAT
18467204 TTTTTTCAT
1 TTTTTTCAT
18467213 TTTTTCTC-T
1 TTTTT-TCAT
*
18467222 TTTTTTTA-
1 TTTTTTCAT
**
18467230 TTTCATCAT
1 TTTTTTCAT
*
18467239 TTTTTTC-C
1 TTTTTTCAT
18467247 TTTTTTCAT
1 TTTTTTCAT
18467256 TTTTTTCA
1 TTTTTTCA
18467264 AGCATAGTAT
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
7 5 0.07
8 23 0.34
9 37 0.55
10 2 0.03
ACGTcount: A:0.12, C:0.13, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTTTCAT
Found at i:18467191 original size:17 final size:17
Alignment explanation
Indices: 18467157--18467263 Score: 96
Period size: 17 Copynumber: 6.4 Consensus size: 17
18467147 TAAGTCCTCC
*
18467157 TTTTTCACTTTTTC--T
1 TTTTTCATTTTTTCATT
* *
18467172 TTTTTCATTTTTTTA-A
1 TTTTTCATTTTTTCATT
18467188 TTTTTCTATTTTTTCA-T
1 TTTTTC-ATTTTTTCATT
*
18467205 TTTTTCATTTTTTCTCTT
1 TTTTTCATTTTTTC-ATT
* **
18467223 TTTTTTATTTCATCATT
1 TTTTTCATTTTTTCATT
*
18467240 TTTTTCCTTTTTTCATT
1 TTTTTCATTTTTTCATT
18467257 TTTTTCA
1 TTTTTCA
18467264 AGCATAGTAT
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
15 12 0.16
16 14 0.19
17 35 0.48
18 12 0.16
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTCATTTTTTCATT
Found at i:18467199 original size:25 final size:25
Alignment explanation
Indices: 18467157--18467260 Score: 90
Period size: 25 Copynumber: 4.2 Consensus size: 25
18467147 TAAGTCCTCC
*
18467157 TTTTTCACTTTTTC--TTTTTTCAT
1 TTTTTCAATTTTTCTATTTTTTCAT
*
18467180 TTTTTTAATTTTTCTATTTTTTCAT
1 TTTTTCAATTTTTCTATTTTTTCAT
* *
18467205 TTTTTCATTTTTTCTCTTTTTT--T
1 TTTTTCAATTTTTCTATTTTTTCAT
* * *
18467228 TATTTCATCATTTTTTTCCTTTTTTCAT
1 TTTTTCA--ATTTTTCT-ATTTTTTCAT
18467256 TTTTT
1 TTTTT
18467261 TCAAGCATAG
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
23 19 0.29
25 34 0.52
26 7 0.11
28 5 0.08
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (25 bp):
TTTTTCAATTTTTCTATTTTTTCAT
Found at i:18471583 original size:157 final size:157
Alignment explanation
Indices: 18471120--18471618 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 157
18471110 CCTATCTAAG
* * * * **
18471120 CATACGAAGTTCATTCCCA-GTCTAAGATCGGACAGGATCGAAGGTTACGACAATAGGATCGGTA
1 CATACGAAGTTCATT-CCATGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCAGGATCGGTA
* * *
18471184 GCACACAGGGGGGACCGGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACC
65 GCACACAGGGGGGACC-GGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGACCAGCTGAGCACC
* * *
18471249 CGTACGCCCATTTCATGGGTTGGCTTAGG
129 CGCACGCTCATTTCATGGGTTGGCTTAGC
* * * ** * * *
18471278 CATAGGGAGTTCATTCCATGTCTAAG-CCCTAGCCGAATCGAGGGTTGTGGCAGCGGGA-CTGGT
1 CATACGAAGTTCATTCCATGTCTAAGATCGGA-CCGGATCGAGGGTTATGGCAGCAGGATC-GGT
* * * * * * * *
18471341 AGCACATAGAGGGGGATCGGACCGATCCCCGACTT-TCACATTATGCCTCTCTGACCGGCTCAGC
64 AGCACACAG-GGGGGACCGG-CCGATCCTCGACTTGT-GCATTCTGCCTCTCCGACCAGCTGAGC
* * * *
18471405 ACCCGCATGCTCATTT-GTGGGTTGACTTAGT
126 ACCCGCACGCTCATTTCATGGGTTGGCTTAGC
* * * *
18471436 TATACGAAGTTCATTTCA-GTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCAGGATCGATAG
1 CATACGAAGTTCATTCCATGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCAGGATCGGTAG
* * * **
18471500 CACGCAGGGGGGACCAGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGACCAGCTGAGTGCCC
66 CACACAGGGGGGACC-GGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGACCAGCTGAGCACCC
* **
18471565 CCACGCTTGTTTCATGGGTTGGCTTAGC
130 GCACGCTCATTTCATGGGTTGGCTTAGC
18471593 CATACGAAGTTCATTCCATGTCTAAG
1 CATACGAAGTTCATTCCATGTCTAAG
18471619 CATACGGAGT
Statistics
Matches: 264, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 50 0.19
157 75 0.28
158 86 0.33
159 53 0.20
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
CATACGAAGTTCATTCCATGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCAGGATCGGTAG
CACACAGGGGGGACCGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGACCAGCTGAGCACCCG
CACGCTCATTTCATGGGTTGGCTTAGC
Found at i:18471623 original size:26 final size:26
Alignment explanation
Indices: 18471593--18471644 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18471583 TTGGCTTAGC
18471593 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
*
18471619 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
18471645 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:18471824 original size:26 final size:26
Alignment explanation
Indices: 18471788--18471840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18471778 GTTGACTTAG
*
18471788 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTACATCCCCAGTCTAA
*
18471814 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATCCCCAGTCTAA
18471840 G
1 G
18471841 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTACATCCCCAGTCTAA
Found at i:18472001 original size:26 final size:26
Alignment explanation
Indices: 18471972--18472024 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18471962 GTTGGTTTAG
* *
18471972 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCACGTCTAA
*
18471998 GCATACGAAGTTCATTCCCCGTCTAA
1 GCATACGAAGTTCATTCCACGTCTAA
18472024 G
1 G
18472025 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCACGTCTAA
Found at i:18472016 original size:184 final size:184
Alignment explanation
Indices: 18471437--18472026 Score: 677
Period size: 184 Copynumber: 3.1 Consensus size: 184
18471427 TGACTTAGTT
* *** *
18471437 ATACGAAGTTCATT-TCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCAGGATCGATAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGC
* * * * * *
18471501 ACGCAGGGGGGACCAGGTCGAT-CCTCGGCTTGTGCATTCTGCCTCTCCGACCAGCTGAGTGCCC
66 ACGCAGGGGGGATCGGGCCGATCCCT-GGCTTGTGCATTCTGCCTCTCTGACCGGCTGAGCGCCC
* * * * *
18471565 CCACGCTTGTTTCATGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGC
130 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
18471620 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACTAGCAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGA-T-----C
* *
18471685 AGGATCAGCAGCATGCAGGGGGGATCGGGCCGATCTCC-AGCTTGTGCATTCTGCCTCT-TCGAT
60 --GA-CAGCA-C--GCAGGGGGGATCGGGCCGATC-CCTGGCTTGTGCATTCTGCCTCTCT-GAC
* * * * *
18471748 CGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
117 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCT
18471812 AAGC
181 AAGC
* * * *
18471816 ATACGGAGTACATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGTAGGATCGACAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGC
* * * * *
18471881 ACGCAGGTGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGTCTCTCTGACCGGTTGAACGCCCG
66 ACGCAGGGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCGGCTGAGCGCCCG
* *
18471946 TACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
18472000 ATACGAAGTTCATTCCCCGTCTAAGAT
1 ATACGAAGTTCATTCCCAGTCTAAGAT
18472027 TTTGAGCCAC
Statistics
Matches: 343, Mismatches: 44, Indels: 39
0.81 0.10 0.09
Matches are distributed among these distances:
183 18 0.05
184 156 0.45
185 2 0.01
186 1 0.00
187 5 0.01
188 2 0.01
190 2 0.01
192 2 0.01
193 4 0.01
194 1 0.00
195 1 0.00
196 144 0.42
197 3 0.01
198 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGC
ACGCAGGGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
Found at i:18472731 original size:157 final size:159
Alignment explanation
Indices: 18472347--18472767 Score: 521
Period size: 157 Copynumber: 2.7 Consensus size: 159
18472337 AAATCTTCAA
* *
18472347 AGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCT-GCTGAGTGCCCGCACACCCATTTCA
1 AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CTGGCTGAGTGCCCGCACACTCATTTCA
* * * *
18472411 TGGTTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
65 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
* *
18472476 AGCTGGACCGGCAGCACGCATAGGGGGACC
130 AGCAGGACCGACAGCACGCATAGGGGGACC
* * * * *
18472506 AGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC-GATCGGCTCAGTGCCCGTACGCTCATTTCA
1 AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GGCTGAGTGCCCGCACACTCATTTCA
* ****
18472570 TGGGTTGACTTAGGCATA-GGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGAGGGTTGTG
65 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTG
* *
18472632 GCAGCAGGATCGACAGCATGCA-AGGGGGACC
128 GCAGCAGGACCGACAGCACGCATAGGGGGACC
* * * * * * *
18472663 GGGTCGATCCCCGGCTTACGCATTCTGCCTGTCCGGCTGGCTGAGCGCCCGCACACTCGTTTCGT
1 AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCACACTCATTTCAT
18472728 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18472768 ATACAGAGTT
Statistics
Matches: 222, Mismatches: 32, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
157 80 0.36
158 70 0.32
159 72 0.32
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCACACTCATTTCAT
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
GCAGGACCGACAGCACGCATAGGGGGACC
Found at i:18472776 original size:26 final size:26
Alignment explanation
Indices: 18472740--18472792 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18472730 GTTGGCTTAG
*
18472740 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18472766 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18472792 G
1 G
18472793 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18473120 original size:159 final size:159
Alignment explanation
Indices: 18472828--18473282 Score: 428
Period size: 159 Copynumber: 2.9 Consensus size: 159
18472818 AGCAGGACCA
* * *
18472828 GCAGCAGGATCGGTAGCACGCATGAGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCTC
1 GCAGCAGGACCGGTAGCACACATGAGGGGACCGAGCCGATCCCCGACTTGCGCATTATACCTCTC
* * * * *
18472893 TGGCCAGCTGAGCGCCCGCCCGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
18472958 TCTAAGCCCTAGTCTAACCGAGGGTTGTG
131 TCTAAGCCCTAGTCTAACCGAGGGTTGTG
* * * * * *
18472987 GCAGCGGGACCGGTAGCACACA-GAGTGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
1 GCAGCAGGACCGGTAGCACACATGAG-GGGACCGAGCCGATCCCCGACTTGCGCATTATACCTCT
* * * *
18473051 CCGACCGGCTCAGTGCCCGCATGGTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
65 CCGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCA
** * ** ** ** *
18473116 -GTCTAAGATCGAACCGGATTGAGGGTTGCG
129 TGTCTAAGCCCTAGTCTAACCGAGGGTTGTG
* * ** * * * * * * * * * * *
18473146 GTAGCAGGATCGACAGCACGCAAGGGGGGACAGGGTCGACCCCCGACTTGTGCATTCTGCCTCTT
1 GCAGCAGGACCGGTAGCACACATGAGGGGACCGAGCCGATCCCCGACTTGCGCATTATACCTCTC
* * * * ** *
18473211 CGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTATCCATACGAAGTTCATTCCATG
66 CGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
18473276 TCTAAGC
131 TCTAAGC
18473283 ATACGAAGTT
Statistics
Matches: 238, Mismatches: 54, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
158 6 0.03
159 227 0.95
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
GCAGCAGGACCGGTAGCACACATGAGGGGACCGAGCCGATCCCCGACTTGCGCATTATACCTCTC
CGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCTAGTCTAACCGAGGGTTGTG
Found at i:18473286 original size:26 final size:26
Alignment explanation
Indices: 18473256--18473307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18473246 TTGGCTTATC
18473256 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
18473282 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
18473308 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:18473870 original size:158 final size:156
Alignment explanation
Indices: 18473477--18473976 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 156
18473467 CCCAGTCTAA
* * * * * * *
18473477 GCATACGGAGTGCATTTC-TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATTGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAAGGTTTCGGCAGCAGGATCGAC
* * *
18473541 AGCACGTAGGTGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGCCG-CTGAGCGC
* * *
18473606 CCGCACGCCCATTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
18473635 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACC-AAGGTTGT-GGCAGCGGGA-CCA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAAGGTT-TCGGCAGCAGGATCGA
* * * * *
18473696 GCAGCACGCGGAGGGGGACCGGGTCGATCCCCGACTTGGGCATTATGCCTCTTCGGCCAGCTCAG
64 -CAGCACGCAG-GGGGGACCGGGTCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGCC-GCTGAG
* * *
18473761 CGCCGGCACGCTCGTTTCGTGGGTTGACTTAT
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
18473793 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTGGACCGAAGGTTTCGGCAATAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAAGGTTTCGGCAGCAGGATCGAC
* *** *
18473857 AGCACGCAGGGGGGATCGAACCGATCCCCTGCTTGCGCA-TCTGCCTCTCCGGCTGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGC-CGCTGAGCGC
*
18473921 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
18473950 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18473977 CATACAAAGT
Statistics
Matches: 277, Mismatches: 50, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
156 4 0.01
157 92 0.33
158 149 0.54
159 30 0.11
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAAGGTTTCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGCTTGCGCATTCTGCCTCTCCGGCCGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18474705 original size:158 final size:159
Alignment explanation
Indices: 18474328--18474746 Score: 515
Period size: 159 Copynumber: 2.6 Consensus size: 159
18474318 TCTTCAAAGG
* * * *
18474328 CCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGC-CTGTTTCATGG
1 CCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC-GTTTCGTGG
* * * * *
18474392 GTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGC
65 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGGCAGC
** *
18474457 GGGACTGGCAGCACACAGAGGGGGACCGAA
130 AAGACTGACAGCACACAGAGGGGGACCGAA
* * * * *
18474487 CCGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGTGCCCGTACGCTCGTTTCGTGGG
1 CCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* ** *
18474552 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAG
66 TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGCGGCAG
* ** **
18474615 CAAGATTGACAGCACGTAG-GGGGGACCGGG
129 CAAGACTGACAGCACACAGAGGGGGACCGAA
* *
18474645 TCGATCCCCGACTTGCGCATTCTGCCTCTTCGA-CTGGCTGAGCGCCCGCACGCTCGTTTCGTGG
1 CCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTCGTGG
18474709 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18474747 ATACAGAGTT
Statistics
Matches: 220, Mismatches: 34, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
157 4 0.02
158 98 0.45
159 114 0.52
160 4 0.02
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (159 bp):
CCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGGCAGCA
AGACTGACAGCACACAGAGGGGGACCGAA
Found at i:18474755 original size:26 final size:26
Alignment explanation
Indices: 18474719--18474771 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18474709 GTTGGCTTAG
*
18474719 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18474745 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18474771 G
1 G
18474772 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18475134 original size:26 final size:26
Alignment explanation
Indices: 18475083--18475136 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
18475073 TGGGTTGACT
*
18475083 TAGGCATACGGAGTTCATCCGTAGTC
1 TAGGCATACGGAGTTCATCCGCAGTC
18475109 TAGGCATACGGAGTTCATTCC-CAGTC
1 TAGGCATACGGAGTTCA-TCCGCAGTC
18475135 TA
1 TA
18475137 AGATCGGAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCGCAGTC
Found at i:18475337 original size:367 final size:360
Alignment explanation
Indices: 18474637--18475446 Score: 844
Period size: 367 Copynumber: 2.3 Consensus size: 360
18474627 CACGTAGGGG
* * * ** * *
18474637 GGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGT
1 GGACCAGGTCGATCCCCGACTTGCGCATTCTGCATCTCCGACCAGCTGAGCGCCCGCACACTCAT
*
18474702 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
66 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
18474767 CTAAGATCGGACCGAACTGAGGGTTGTTGCAGTAGGACCAGCAGCAGGATCGGCAGCACACAGGG
131 CTAAGATCGGA-CGAACTGAGGG-TGTT---GT--GACCAGCAGCAGGATCGGCAGCACACAGGG
* ** * *
18474832 GGGGATCGAGATGATCCCCGACTTGCGCATTCTACCCTCCAGCCGACTGAGCGCCCGCACGCTCG
189 GGGGACCGAGACCATCCCCGACTTGCGCATTCTACCCTCCAGCCGACTGAGCACCCGCACGCCCG
*
18474897 ATCCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTT
254 ATCCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTT
18474962 GTGGCAGCAGGACTGGCATCGGCATCAATAGCACGCAGAGGA
319 GTGGCAGCAGGACTGGCATCGGCATCAATAGCACGCAGAGGA
* *
18475004 GGACCAGGTCGATCCCCGGCTTGCGCATTAC-GCATCTCCGGCCAGCTGAGCGCCCGCACACTCA
1 GGACCAGGTCGATCCCCGACTTGCGCATT-CTGCATCTCCGACCAGCTGAGCGCCCGCACACTCA
* * *
18475068 TTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCGTAGTCTAGGCATACGGAGTTCATTCCCA
65 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACAGAGTTCATTCCCA
* * * *
18475132 GTCTAAGATCGGA-GTAGACTGA-GG-G-T-T-A-CGGTAGCAGGATCGGTAGCACGCA-GGGGG
129 GTCTAAGATCGGACG-A-ACTGAGGGTGTTGTGACCAGCAGCAGGATCGGCAGCACACAGGGGGG
* * * * * * ** *
18475189 GACC-AGGCCCATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCCCGT
192 GACCGA-GACCATCCCCGACTTGCGCATTCTACC-CTCCAGCCGACTGAGCACCCGCACGCCCGA
* * * * ** **
18475253 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCCCCAGTCGGACTGAGGGTTG
255 TCCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTG
*
18475318 TGGCAGCAGGA----C--CGGCAGC-AT-GCA-G-AG-GG-
320 TGGCAGCAGGACTGGCATCGGCATCAATAGCACGCAGAGGA
* * * * * * * *
18475347 GGATC-GGGCTGATCCCC-AGCTTGCGCATTATGCCTCTCCCG-TCGGCTCAGCGCCCGCACGCT
1 GGACCAGGTC-GATCCCCGA-CTTGCGCATTCTGCATCT-CCGACCAGCTGAGCGCCCGCACACT
*
18475409 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
63 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
18475447 CAGTCTAGGA
Statistics
Matches: 381, Mismatches: 51, Indels: 45
0.80 0.11 0.09
Matches are distributed among these distances:
342 3 0.01
343 76 0.20
344 8 0.02
345 2 0.01
346 1 0.00
347 3 0.01
348 2 0.01
349 6 0.02
351 1 0.00
353 1 0.00
354 29 0.08
355 110 0.29
356 1 0.00
359 1 0.00
363 1 0.00
364 1 0.00
365 1 0.00
366 7 0.02
367 126 0.33
368 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (360 bp):
GGACCAGGTCGATCCCCGACTTGCGCATTCTGCATCTCCGACCAGCTGAGCGCCCGCACACTCAT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
CTAAGATCGGACGAACTGAGGGTGTTGTGACCAGCAGCAGGATCGGCAGCACACAGGGGGGGACC
GAGACCATCCCCGACTTGCGCATTCTACCCTCCAGCCGACTGAGCACCCGCACGCCCGATCCATG
GGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGGCAG
CAGGACTGGCATCGGCATCAATAGCACGCAGAGGA
Found at i:18475612 original size:159 final size:156
Alignment explanation
Indices: 18475109--18475624 Score: 545
Period size: 159 Copynumber: 3.2 Consensus size: 156
18475099 ATCCGTAGTC
* **
18475109 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGTAGACTGAGGGTTACGGTAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGTGGACTGAGGGTTGTGGTAGCAGGATCG
* ** * * * * *
18475174 GTAGCACGCAGGGGGGACCAGGCCCATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGC
66 GCAG-ACATAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGC
* *
18475239 ACCCGCACGCCCGTTTCATGGGTTGGCT
129 GCCCGCACGCTCGTTTCATGGGTTGGCT
* * ** * *
18475267 TAGGCATACGGAGTTCATT-CCATGTCTATG-CCCCAGTCGGACTGAGGGTTGTGGCAGCAGGAC
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGAGT-GGACTGAGGGTTGTGGTAGCAGGAT
* * *
18475330 CGGCAG-CATGCAGAGGGGGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCCGTCGGCT
64 CGGCAGACAT--AG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CCGTCGGCT
* * *
18475394 CAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
125 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * *
18475426 TAGGCATACGGAGTTCATTCCCAGTCTAGGATCGGACTGGACCGAGAGTTGTGGTAGCAAGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGTGGACTGAGGGTTGTGGTAGCAGGATCG
* * * * *
18475491 GCAGAACATAGGGTGGGATCGGGCCGATCCCTGGCTTACACATTCTGCCTCTCCGACCGACTGAG
66 GCAG-ACATAGGG-GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAG
*
18475556 CGCCCGTACGCTCGTTTCATGGGTTGGCT
128 CGCCCGCACGCTCGTTTCATGGGTTGGCT
*
18475585 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCATACGGAGT
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAG-AT-CGGAGT
18475625 TCATTTACAG
Statistics
Matches: 293, Mismatches: 50, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 7 0.02
158 60 0.20
159 207 0.71
160 10 0.03
161 8 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGTGGACTGAGGGTTGTGGTAGCAGGATCG
GCAGACATAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCT
Found at i:18475637 original size:26 final size:26
Alignment explanation
Indices: 18475588--18475640 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18475578 GTTGGCTTAG
* *
18475588 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTACATGTCTAA
18475614 GCATACGGAGTTCATTTACA-GTCTAA
1 GCATACGGAGTTCA-TTACATGTCTAA
18475640 G
1 G
18475641 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACATGTCTAA
Found at i:18475924 original size:13 final size:13
Alignment explanation
Indices: 18475906--18475930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18475896 GCACATTATG
18475906 CCTCTCCGATCGT
1 CCTCTCCGATCGT
18475919 CCTCTCCGATCG
1 CCTCTCCGATCG
18475931 GTTGAGCGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.16, T:0.28
Consensus pattern (13 bp):
CCTCTCCGATCGT
Found at i:18475998 original size:26 final size:26
Alignment explanation
Indices: 18475969--18476021 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18475959 GTAGACTTAG
*
18475969 GCATACAGAGTTGATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18475995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18476021 G
1 G
18476022 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18476171 original size:883 final size:865
Alignment explanation
Indices: 18474343--18476524 Score: 2644
Period size: 883 Copynumber: 2.5 Consensus size: 865
18474333 CCCCGACTTA
*
18474343 CGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
* * *
18474408 GGAGCTCATTCCATGTCTAAGCCCCAGTCGGA-TCGAGGGTTGTGGCAGCGGGACTGGCAGCACA
66 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACT-GAGGGTTGTGGCAGCGGGACCGGCAGCACG
* * * *
18474472 CAGAGGGGGACCGAACCGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGTGCCCGTA
130 CAGAGGGGGATCGGACCGATCCCCG-CTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCA
18474537 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
194 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCG
* * * *
18474602 AGGGTTGCGGCAGCAAGATTGACAGCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTC
258 AGGGTTGTGGTAGCAAGATTGACAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTC
* *
18474667 TGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
323 TGCCTCTCCGAC-CGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * *
18474732 ATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGTTGC
387 ATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCGAACTGAGGGTTGCTGC
* * *
18474797 AGTAGGACCAGCAGCAGGATCGGCAGCACACAGGGGGGGATCGAGATGATCCCCGACTTGCGCAT
452 AGTAGGACCAGCAGCAGGATCGGCAGCACACAGGCGGGGATCGAGACGATCCCCGACTTACGCAT
*
18474862 TCTACCCTCCAGCCGACTGAGCGCCCGCACGCTCGATCCGTGGGTTGGATTAGGCATACGGAGTT
517 TCTACCCTCCAGCCGACTGAGCCCCCGCACGCTCGATCCGTGGGTTGGATTAGGCATACGGAGTT
* * *
18474927 CATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGGCAGCAGGACTGGCATCGGCATCAATA
582 CATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGACAGCAGGACTGGCAGCGGCATCAACA
* * * *
18474992 GCACGCAGAGGAGGACCAGGTCGATCCCCGGCTTGCGCATTACGCATCTCCGGCCAGCTGAGCGC
647 GCACGCAAAGGAGGACCAGCTCGATCCCCAGCTTGCACATTACGCATCTCCGGCCAGCTGAGCGC
* * ** *
18475057 CCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCGTAGTCTAGGCATACGGAG
712 CCGCACACTCATTTCGTGGGTAGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAG
* ** * ** ** *
18475122 TTCATTCCCAGTCTAAGATCGGAGTAGACTGAGGGTTACGGTAGCAGGATCGGTAGCACGCAGGG
777 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAAGG
* *
18475187 GGGACCAGGCCCATCCCCGGCTTG
842 GGGACCAGGCACATCCCAGGCTTG
* ** * *
18475211 TGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
* * *
18475276 GGAGTTCATTCCATGTCTATGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCATGC
66 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGC
* * *
18475341 AGAGGGGGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCCG-TCGGCTCAGCGCCCGCA
131 AGAGGGGGATCGGACCGATCCCC-GCTTGCGCATTATGCCTCT-CCGATCGGCTCAGTGCCCGCA
*
18475405 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCGGACTGGACCG
194 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCG
* * * * * * * * *
18475470 AGAGTTGTGGTAGCAAGATCGGCAGAACATAGGGTGGGATCGGGCCGATCCCTGGCTTACACATT
258 AGGGTTGTGGTAGCAAGATTGACAGCACATAGGG-GGGACCGGGTCGATCCCCGGCTTGCGCATT
* * *
18475535 CTGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
322 CTGCCTCTCCGACCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
* *
18475600 CATTCCATGTCTAAGCATACGGAGTTCATTTACAGTCTAAGATCGGATCGAACTGAGGGTTGCTG
386 CATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCGAACTGAGGGTTGCTG
* * ** * * * *
18475665 TAGTAGGACCAGCAGCAGGATCGGTAGCATGCAGGCGGGTATCGAGCCGATCCTCGGCTTACGCA
451 CAGTAGGACCAGCAGCAGGATCGGCAGCACACAGGCGGGGATCGAGACGATCCCCGACTTACGCA
* * * * * *
18475730 TTCTGCCTCTCC-GACCGGCTGAGCCCCCGTACTCTC-ATTTCGTGGGTTGGCTTAGGCATACGG
516 TTCTACC-CTCCAG-CCGACTGAGCCCCCGCACGCTCGA-TCCGTGGGTTGGATTAGGCATACGG
* * * *
18475793 AGTTCATTCCATGTTTAAGCCCCAGCCAGACCGAGGGTTGTGACAGTAGGA-TCGGCAGCGAG-A
578 AGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGACAGCAGGACT-GGCAGCG-GCA
*** * * *
18475856 TTGGCAGCACGCAAAAGG-GGATCGAGCT-GATCCCCAGCTTGCACATTATGCCTCTCCGATCGT
641 TCAACAGCACGC-AAAGGAGGA-CCAGCTCGATCCCCAGCTTGCACATTACGCATCTCCG---G-
* ** * *
18475919 CCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTAGACTTAGGCATACAGAGTTGAT
700 -----CC-A---GCTGAGCGCCCGCACACTCATTTCGTGGGTAGACTTAGGCATACAGAGTTCAT
* **
18475984 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAG
756 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
* ** *
18476049 CAGGATTGACAGCACGCAAGGGGGACTGGGCAGATCCCAGGCTTG
821 CAGGATCGACAGCACGCAAGGGGGACCAGGCACATCCCAGGCTTG
* *
18476094 CGCATTCTGCCTTTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
* * * *
18476159 GGAGTTCATTCCATATCTAAGCCCTAG-CTAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACG
66 GGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACG
* * ** * * * * *
18476223 CAAAGGGGGATCAGACCGATTCCTGGCTTGCGCATTATTCCTCTTCGACCAG-TGCAGTGCACGC
130 CAGAGGGGGATCGGACCGA-TCCCCGCTTGCGCATTATGCCTCTCCGATCGGCT-CAGTGCCCGC
** * * * * * * * *
18476287 ATACTCATTTTGTGGGTTGACTTATGCATACGGAGTTTATTCCTAGTCTAAGATTGGACCGACCA
193 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCG
* * *
18476352 AGGGTTGCTGCCGTAG---GATTGACAGCACACAGGGGCAGACCGGGTCGATCCCCGGCTTGCGT
258 AGGGTTG-TG--GTAGCAAGATTGACAGCACATAGGGG-GGACCGGGTCGATCCCCGGCTTGCGC
* * * * * *
18476414 ATTTTGCCTCTCTGGCCTGCTGAGCGCTCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACAGA
319 ATTCTGCCTCTCCGACC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* * * *
18476479 GTTCATTCCATGTCTAAGCATACGAAGTTCAATCCCAATCTAAGAT
383 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGAT
18476525 TTTGAGCCAT
Statistics
Matches: 1110, Mismatches: 169, Indels: 56
0.83 0.13 0.04
Matches are distributed among these distances:
867 1 0.00
868 257 0.23
869 210 0.19
870 135 0.12
871 9 0.01
873 1 0.00
879 2 0.00
880 1 0.00
881 1 0.00
882 142 0.13
883 344 0.31
884 3 0.00
885 4 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (865 bp):
CGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGC
AGAGGGGGATCGGACCGATCCCCGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGG
GTTGTGGTAGCAAGATTGACAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGC
CTCTCCGACCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCGAACTGAGGGTTGCTGCAGTA
GGACCAGCAGCAGGATCGGCAGCACACAGGCGGGGATCGAGACGATCCCCGACTTACGCATTCTA
CCCTCCAGCCGACTGAGCCCCCGCACGCTCGATCCGTGGGTTGGATTAGGCATACGGAGTTCATT
CCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGACAGCAGGACTGGCAGCGGCATCAACAGCAC
GCAAAGGAGGACCAGCTCGATCCCCAGCTTGCACATTACGCATCTCCGGCCAGCTGAGCGCCCGC
ACACTCATTTCGTGGGTAGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAAGGGGGA
CCAGGCACATCCCAGGCTTG
Found at i:18477227 original size:26 final size:26
Alignment explanation
Indices: 18477191--18477243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18477181 GTTGACTTAG
*
18477191 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
18477217 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
18477243 G
1 G
18477244 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:18478209 original size:26 final size:26
Alignment explanation
Indices: 18478159--18478211 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18478149 GTTGACTTAG
*
18478159 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
*
18478185 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGAAGTTCA-TCCCTAATCTAA
18478211 G
1 G
18478212 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:18478313 original size:184 final size:184
Alignment explanation
Indices: 18478001--18478370 Score: 458
Period size: 184 Copynumber: 2.0 Consensus size: 184
18477991 GTTAACTTAG
* * *
18478001 GCATACGGAGTTCATCCCCAGTCTAAGATCAGATCGGACTGAGGGATGCTCCAGTAGGATTGATA
1 GCATACGGAGTTCATCCCCAATCTAAGATCAGATCGGACTGAGGGATGCGCCAGTAGGATCGATA
* * * *
18478066 GCACATAGGGGGGACCGGGCCAATCCCTGGCTTGCACATTCTGCCTCTCCGCCCGACTGAGCGCA
66 GCACACAAGGGGGACCGAGCCAATCCCTGGCTTGCACATTCTACCTCTCCGCCCGACTGAGCGC-
*
18478131 C-GCACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCC-TAGTCTAA
130 CTGCACACCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCAT-GTCTAA
* * * *
18478185 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGA-TCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGGAGTTCATCCCCAATCTAAGATCAGATCGGACT-GAGGGATGCGCCAGTAGGATCGAT
* * * * ** **
18478249 AGCACGCAAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGC
65 AGCACACAAGGGGGACCGAGCCAATCCCTGGCTTGCACATTCTACCTCTCCGCCCGACTGAGCGC
* * * * * *
18478314 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CTGCACACCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAA
18478369 GC
1 GC
18478371 CCCAGCTGGA
Statistics
Matches: 157, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 2 0.01
184 154 0.98
185 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATCCCCAATCTAAGATCAGATCGGACTGAGGGATGCGCCAGTAGGATCGATA
GCACACAAGGGGGACCGAGCCAATCCCTGGCTTGCACATTCTACCTCTCCGCCCGACTGAGCGCC
TGCACACCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAA
Found at i:18478479 original size:159 final size:160
Alignment explanation
Indices: 18478188--18478687 Score: 543
Period size: 159 Copynumber: 3.2 Consensus size: 160
18478178 AGTCTAAGCA
* * * * ** * * **
18478188 TACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGATCGAGGGTTGCGGCAGTAGGATCGGTAG
1 TACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTAGCAGCAGGACCGACAG
* * *
18478251 CACGCA-AGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGCC
65 CACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
18478315 TGCACGCCCGTTTCGTGGGTTGGCTTAGGCA
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCG
* * * * *
18478346 TAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGC-GAGACCGGCAG
1 TACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTAGCAGCAG-GACCGACAG
* * * *
18478409 CACGCAGAGGGGGACC-AGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGC
65 CACGCAGAGGGGGACCGA-GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
18478473 CCGCACGCTCGTTTCATGGGTTGACTTATGCG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCG
*** * *
18478505 TACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGAGGGTTGTAGCAGCAGGATCGATAG
1 TACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTAGCAGCAGGACCGACAG
* * *
18478568 CACGCAG-GGGGGTCCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACC
65 CACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
18478632 CGTACGCTCTTTTCGTGGGTTGGCTAAGGCG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCG
18478663 TACGG-GTTCATTCCATGTCTAAGCA
1 TACGGAGTTCATTCCATGTCTAAGCA
18478688 TACGGAGTTC
Statistics
Matches: 284, Mismatches: 47, Indels: 22
0.80 0.13 0.06
Matches are distributed among these distances:
156 3 0.01
157 18 0.06
158 129 0.45
159 130 0.46
160 4 0.01
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (160 bp):
TACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTAGCAGCAGGACCGACAGC
ACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCG
Found at i:18478664 original size:158 final size:158
Alignment explanation
Indices: 18478188--18478685 Score: 578
Period size: 158 Copynumber: 3.2 Consensus size: 158
18478178 AGTCTAAGCA
* * * * *
18478188 TACGGAGTTCATTCCCA-ATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAGGATCGGTAGC
1 TACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGC
* * * *
18478252 ACGCAAGGGGGAT-CGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGCCT
65 ACGC-AGGGGGGTCCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
* *
18478316 GCACGCCCGTTTCGTGGGTTGGCTTAGGCA
129 GCACGCTCGTTTCGTGGGTTGGCTTAGGCG
* ** * * *
18478346 TAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGC-GAGACCGGCAG
1 TACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAG-GATCGGTAG
* * * * *
18478409 CACGCAGAGGGGGACC-AGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGC
64 CACGCAG-GGGGGTCCGA-GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
18478473 CCGCACGCTCGTTTCATGGGTTGACTTATGCG
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCG
** * *
18478505 TACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTGTAGCAGCAGGATCGATAGC
1 TACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGC
* *
18478569 ACGCAGGGGGGTCCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCG
65 ACGCAGGGGGGTCCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
* * *
18478634 TACGCTCTTTTCGTGGGTTGGCTAAGGCG
130 CACGCTCGTTTCGTGGGTTGGCTTAGGCG
18478663 TACGG-GTTCATTCCATGTCTAAG
1 TACGGAGTTCATTCCATGTCTAAG
18478686 CATACGGAGT
Statistics
Matches: 281, Mismatches: 48, Indels: 23
0.80 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 20 0.07
158 131 0.47
159 123 0.44
160 4 0.01
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
TACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCA
CGCAGGGGGGTCCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCG
Found at i:18478692 original size:25 final size:26
Alignment explanation
Indices: 18478663--18478711 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18478653 GGCTAAGGCG
18478663 TACGG-GTTCATTCC-ATGTCTAAGCA
1 TACGGAGTTCATTCCTA-GTCTAAGCA
18478688 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
18478712 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.23
26 16 0.73
27 1 0.05
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCA
Found at i:18479705 original size:158 final size:160
Alignment explanation
Indices: 18479308--18479727 Score: 458
Period size: 159 Copynumber: 2.6 Consensus size: 160
18479298 TACCATCCGT
* * *
18479308 TCGATCCCCAACTTACGCATTCTGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTCCGTGGG
1 TCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGG
* * * ** *
18479373 TTGACTTAGGCATAC-AGAGTTCATT-CCATGTCTAAGCCCCAGCCATACTGAGGGTTGTGGCAG
66 TTGACTTAGGCATACGA-AGTTCATTCCCATGCCTAAGCACCAGCCAGACCAAGGGTTGCGGCAG
** *
18479436 TGGGACCGACAGCACGCAGAGGGGGACTGAG
130 TAAGACCGACAGCACACAGAGGGGGACTGAG
* * * * * *
18479467 TCGATCCCCGGCTTGCGCATTATGCCTGTCCGACCGGCTTAGCGCCCACACGCTCGTTTCGTGGG
1 TCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGG
*
18479532 TTGACTTAGGCATACGAAGTTCATTCCCA-GCCTAAG-ATCAGACCAGACCAAGGGTTGCGGCAG
66 TTGACTTAGGCATACGAAGTTCATTCCCATGCCTAAGCACCAG-CCAGACCAAGGGTTGCGGCAG
** *
18479595 TAAGATTGACAGCACACAG-GGGGGA-TCGGG
130 TAAGACCGACAGCACACAGAGGGGGACT-GAG
* * * * * * * *
18479625 TCGGTCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCACTCGCGCACTCGTTTCGTGGG
1 TCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
18479690 TTGGCTTAAGCATACGGAGTTCATT-CCATGTCTAAGCA
66 TTGACTTAGGCATACGAAGTTCATTCCCATGCCTAAGCA
18479728 TACGGAGTTC
Statistics
Matches: 216, Mismatches: 39, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
157 4 0.02
158 91 0.42
159 117 0.54
160 4 0.02
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (160 bp):
TCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGAAGTTCATTCCCATGCCTAAGCACCAGCCAGACCAAGGGTTGCGGCAGT
AAGACCGACAGCACACAGAGGGGGACTGAG
Found at i:18479732 original size:26 final size:26
Alignment explanation
Indices: 18479696--18479751 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
18479686 TGGGTTGGCT
18479696 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
18479722 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
18479748 TAAG
1 TAAG
18479752 ATCGGATCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:18480132 original size:171 final size:169
Alignment explanation
Indices: 18479726--18480133 Score: 419
Period size: 171 Copynumber: 2.4 Consensus size: 169
18479716 CATGTCTAAG
* * * *
18479726 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGACGGTTGCGATAGCAGGACCAGCAG
1 CATACGGAGTTCA-TCCCAGTCTAAGATCAGATCAGACCGAAGGTTGTGATAGCAGGACCGGCAG
* * *
18479791 CAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTC
65 CAGGATCGACAGCACGTAGGGGGGATCGGGCCAATCCCTGGCTTACGCATTATACCTCTCCGGTC
* * * **
18479856 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGT
130 GGCTGAACGCCTGCACGCTCATTTCGAGGGTTAACTTAGT
* * * * ** * * *
18479896 CATATGGAGTTCTTTCCATGCCTAAGCCCCA-ACCGGACCGAGGGTTGTGATAGCAGGACCGGCA
1 CATACGGAGTTCATCCCA-GTCTAAG-ATCAGATCAGACCGAAGGTTGTGATAGCAGGACCGGCA
* * * *
18479960 GCAGGATCGACAGCATGTAGAGGGGGA-CTGGGCTAAT-CCTCGGCTTATGCATTATGCCTCTCC
64 GCAGGATCGACAGCACGTAG-GGGGGATC-GGGCCAATCCCT-GGCTTACGCATTATACCTCTCC
* *
18480023 GGTCTGCTGAACGCGTGCACGCTCATTTCGAGGGTTAACTTAGGT
126 GGTCGGCTGAACGCCTGCACGCTCATTTCGAGGGTTAACTTA-GT
* * * * * *
18480068 -GTACGGAGTTCATCCTCAGTCTAAGATCAGATCAGACTGAAGGATGTGACAGTAGGATCGGCAG
1 CATACGGAGTTCATCC-CAGTCTAAGATCAGATCAGACCGAAGGTTGTGATAGCAGGACCGGCAG
18480132 CA
65 CA
18480134 CACAGGGGGG
Statistics
Matches: 189, Mismatches: 41, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
169 4 0.02
170 70 0.37
171 111 0.59
172 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (169 bp):
CATACGGAGTTCATCCCAGTCTAAGATCAGATCAGACCGAAGGTTGTGATAGCAGGACCGGCAGC
AGGATCGACAGCACGTAGGGGGGATCGGGCCAATCCCTGGCTTACGCATTATACCTCTCCGGTCG
GCTGAACGCCTGCACGCTCATTTCGAGGGTTAACTTAGT
Found at i:18480419 original size:26 final size:25
Alignment explanation
Indices: 18480382--18480433 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18480372 GTTGGCTTAG
18480382 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAT-TCTAA
*
18480408 GCATACGGAGTTCATTCCATTCTAA
1 GCATACGAAGTTCATTCCATTCTAA
18480433 G
1 G
18480434 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCATTCTAA
Found at i:18481406 original size:159 final size:157
Alignment explanation
Indices: 18481024--18481598 Score: 516
Period size: 159 Copynumber: 3.6 Consensus size: 157
18481014 ACCACCCATT
* ** ** * * * *
18481024 CGATCCCCAGCTTGCGCATCCTGCCTCTGTGGTCGACTGAGCGCTCGCACGCTCGTTCCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGT
* ** * ** * * * **
18481089 TGACTTAGGCATACGGAGTTCATTCCCCGCCTAAGATC-AGACCAGACCGAGGGTTGCGACAGTA
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGA-ACCAAACCGAGGGTTGTGGCAACA
* * ** * **
18481153 GGATC-AGTAGCACGTAGGGGGTATCGGGC
130 GGACCGA-CAGCACACAGGGGG-ACCATGC
* * * * * *
18481182 CGATCCTCAACTTGCACATTCTGTCTCTCCGACCGGTTGAGCGCCCGCATGCCCGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGT
* *
18481247 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCAAACCGAGGGTTGTGGCAAC-G
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAACCAAACCGAGGGTTGTGGCAACAG
*
18481311 AGACCGACAGCACGCAGAAGGGGACCGA-GC
131 -GACCGACAGCACACAG--GGGGACC-ATGC
* * * * *
18481341 TGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGT
* * * ** * ** *
18481406 TGACTTAGGCGTACAGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCA
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCGAACCAAACCGAGGGTTGTGGCAACA
*
18481470 GGATCGACAGCACACAGGGGGACCATGC
130 GGACCGACAGCACACAGGGGGACCATGC
* * *
18481498 CGATCCCCAGCTTGCGCATTCTGCCTTTCC-AGCCGACTGAG-GACCCGCATGCTCGTTTCATGG
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCG-CCCGCATGCTCGTTTCGTGG
*
18481561 GTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
64 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18481599 ATATGAAGTT
Statistics
Matches: 336, Mismatches: 69, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
156 6 0.02
157 90 0.27
158 110 0.33
159 122 0.36
160 8 0.02
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (157 bp):
CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAACCAAACCGAGGGTTGTGGCAACAG
GACCGACAGCACACAGGGGGACCATGC
Found at i:18481601 original size:26 final size:26
Alignment explanation
Indices: 18481568--18481623 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
18481558 TGGGTTGGCT
*
18481568 TAAGCATACGGAGTTCATTCC-ATGTC
1 TAAGCATACGAAGTTCATTCCTA-GTC
*
18481594 TAAGCATATGAAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATTCCTAGTC
18481620 TAAG
1 TAAG
18481624 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCTAGTC
Found at i:18481820 original size:26 final size:26
Alignment explanation
Indices: 18481768--18481820 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18481758 GTTGGCTTAG
*
18481768 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
18481794 GCATTCGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
18481820 G
1 G
18481821 ATCGACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:18482008 original size:26 final size:26
Alignment explanation
Indices: 18481979--18482028 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
18481969 GACGTAGGCA
*
18481979 TACGAAGTT-TTTCCCCAGTCTAAGCG
1 TACGAAGTTCATT-CCCAGTCTAAGCG
*
18482005 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
18482029 ATTGAACCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:18482368 original size:26 final size:26
Alignment explanation
Indices: 18482318--18482370 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18482308 GTTGGCTTAG
* *
18482318 GCATACGGATTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
18482344 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
18482370 G
1 G
18482371 AGTTTGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:18483089 original size:26 final size:26
Alignment explanation
Indices: 18483053--18483105 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18483043 GTTGACTTAG
18483053 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
18483079 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18483105 G
1 G
18483106 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18483605 original size:170 final size:171
Alignment explanation
Indices: 18483311--18483762 Score: 579
Period size: 170 Copynumber: 2.6 Consensus size: 171
18483301 GTACGTAGAA
* * * * *
18483311 GGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCACACTC
1 GGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC
* * * *
18483376 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAGGG
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-TCATGTCTAAGACCAGATCAGACCGAGGG
* * *
18483440 TTGCGGCAGCAAGACTAGCAGTAAGATCGGCAGCACGCAG-G
130 TTGCGGCAGCAAGACCAGAAGCAAGATCGGCAGCACGCAGAG
* * * *
18483481 GGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTC
1 GGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC
* **
18483546 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAATCCCTAG-TCAGACCGAGGG
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGACC-AGATCAGACCGAGGG
* * * * *
18483610 TTGTGGCAGCAAGACCGGAAGCGAGATTGGTAGCACGCAGAG
130 TTGCGGCAGCAAGACCAGAAGCAAGATCGGCAGCACGCAGAG
* * * * *
18483652 GGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTC
1 GGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC
*
18483717 GTTTCGTGGGTTGGCATAGGCATACGGAGTTCA-TTCTATGTCTAAG
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTC-ATGTCTAAG
18483763 CTGGACCGAG
Statistics
Matches: 242, Mismatches: 36, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
169 2 0.01
170 142 0.59
171 98 0.40
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (171 bp):
GGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGACCAGATCAGACCGAGGGT
TGCGGCAGCAAGACCAGAAGCAAGATCGGCAGCACGCAGAG
Found at i:18483838 original size:12 final size:12
Alignment explanation
Indices: 18483779--18483836 Score: 80
Period size: 12 Copynumber: 4.8 Consensus size: 12
18483769 CGAGGGTTAT
18483779 GGCAGTAGGACC
1 GGCAGTAGGACC
*
18483791 AGCAGTAGGACC
1 GGCAGTAGGACC
18483803 GGCAGTAGGACC
1 GGCAGTAGGACC
* * *
18483815 GACAATAGGATC
1 GGCAGTAGGACC
18483827 GGCAGTAGGA
1 GGCAGTAGGA
18483837 TCAGTAGCAC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.31, C:0.21, G:0.38, T:0.10
Consensus pattern (12 bp):
GGCAGTAGGACC
Found at i:18483980 original size:26 final size:26
Alignment explanation
Indices: 18483950--18484002 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18483940 GTTGACTTAG
18483950 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
18483976 GCATACGGATTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18484002 G
1 G
18484003 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18485030 original size:156 final size:156
Alignment explanation
Indices: 18484743--18485030 Score: 404
Period size: 156 Copynumber: 1.8 Consensus size: 156
18484733 AGCAGCAAGA
* * *
18484743 TCGACAGCACGTAGGTGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTG
1 TCGACAGCACGAAGGTGGGACCGGGCCGATCCCTGGCTTGCGCAATCTACCTCTCCGATCGACTG
* *
18484808 AGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCC
66 AG-GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGTAGTTCATTCCATGTCTAAGCCCC
18484873 AGTCGGACTAAGGGTTGTGGTAGCGGG
130 AGTCGGACTAAGGGTTGTGGTAGCGGG
* **
18484900 TCGACAGCACGCAAGG-GGGACCGGGTCGAT-CCTCGGCTTGCGCAATCTACCTCTCCGATCGGT
1 TCGACAGCACG-AAGGTGGGACCGGGCCGATCCCT-GGCTTGCGCAATCTACCTCTCCGATCGAC
* * *
18484963 TGA-GCACCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTTCATGTCTAAGC
64 TGAGGC-CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-AGTAGTTCATTCCATGTCTAAGC
18485026 CCCAG
127 CCCAG
18485031 CCGAACAGAA
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
155 2 0.02
156 58 0.50
157 53 0.46
158 3 0.03
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.24
Consensus pattern (156 bp):
TCGACAGCACGAAGGTGGGACCGGGCCGATCCCTGGCTTGCGCAATCTACCTCTCCGATCGACTG
AGGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGTAGTTCATTCCATGTCTAAGCCCCA
GTCGGACTAAGGGTTGTGGTAGCGGG
Found at i:18485062 original size:157 final size:157
Alignment explanation
Indices: 18484734--18485064 Score: 395
Period size: 156 Copynumber: 2.1 Consensus size: 157
18484724 GAGGGTTGTA
* * *
18484734 GCAGCAAGATCGACAGCACGTAGGTGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCC
1 GCAGCAAGATCGACAGCACGAAGGTGGGACCGGGCCGATCCCTGGCTTGCGCAATCTACCTCTCC
* *
18484799 GATCGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGT
66 GATCGACTGAG-GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGTAGTTCATTCCATGT
* * * *
18484864 CTAAGCCCCAGTCGGACTAAGGGTTGTG
130 CTAAGCCCCAGCCGAACTAAAGGTTCTG
* * * *
18484892 GTAGC-GGGTCGACAGCACGCAAGG-GGGACCGGGTCGAT-CCTCGGCTTGCGCAATCTACCTCT
1 GCAGCAAGATCGACAGCACG-AAGGTGGGACCGGGCCGATCCCT-GGCTTGCGCAATCTACCTCT
** * * *
18484954 CCGATCGGTTGA-GCACCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTTCA
64 CCGATCGACTGAGGC-CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-AGTAGTTCATTCCA
18485017 TGTCTAAGCCCCAGCCGAAC-AGAAGGTTCTG
127 TGTCTAAGCCCCAGCCGAACTA-AAGGTTCTG
*
18485048 GCAGCAAGACCGACAGC
1 GCAGCAAGATCGACAGC
18485065 GAGATCGACA
Statistics
Matches: 145, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
155 3 0.02
156 73 0.50
157 62 0.43
158 7 0.05
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCAGCAAGATCGACAGCACGAAGGTGGGACCGGGCCGATCCCTGGCTTGCGCAATCTACCTCTCC
GATCGACTGAGGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGTAGTTCATTCCATGTC
TAAGCCCCAGCCGAACTAAAGGTTCTG
Found at i:18485681 original size:159 final size:156
Alignment explanation
Indices: 18485179--18485681 Score: 458
Period size: 159 Copynumber: 3.2 Consensus size: 156
18485169 CCTAGTCTAA
* * * * * * *
18485179 GCATACGGAGTTCATTCCCAGTCCATGATCGGACTGGACCAAGGGTTGCGACACCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
18485244 GCACGCAGGGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGTGCC
66 GCAC-AAGGGGGGATCGAGCAG-TCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCC
18485309 CGCACGCTTGTTTCATGGGTTGGCTTAG
129 CGCACGCTTGTTTCATGGGTTGGCTTAG
* ** * * * * *
18485337 GCATAGGGAGTTCAATT--CATGTCTAAGCCCCA-ACCGGATCGAGGGTTGTGGCAGCGGGACCG
1 GCATACGGAGTTC-ATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCG
* * * ** * ** *
18485399 ACAGCACGCAAAGGGGGACCGGGCCTCTCCCCGGCTTGCACATTAAGCCTCTCCGATCGGCTCAA
63 ACAGCA--CAAGGGGGGATCGAG-CAGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCT-AA
* * * * *
18485464 -TGCTCGAATGCTTATTTCATGGGTTGACTTAG
124 GTGCCCGCACGCTTGTTTCATGGGTTGGCTTAG
* * * * *
18485496 GCATACAGAGTTCATTCCCAGCCTAAGATCAGACTGGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
18485561 GCACATAGGAGGGGATCGAGTCAGTCCCTGGTTTGTGCATTCTGCCTCTCCGACCGGCTGAGTGC
66 GCACA-AGG-GGGGATCGAG-CAGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGC
* *
18485626 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTTGTTTCATGGGTTGGCTTAG
18485655 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
18485682 TATACAGAGT
Statistics
Matches: 263, Mismatches: 68, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
157 4 0.02
158 55 0.21
159 198 0.75
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACAAGGGGGGATCGAGCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCG
CACGCTTGTTTCATGGGTTGGCTTAG
Found at i:18485693 original size:26 final size:26
Alignment explanation
Indices: 18485657--18485707 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18485647 TGGCTTAGGC
*
18485657 ATACGGAGTTCATTCC-ATGTCTAAGT
1 ATACAGAGTTCATTCCTA-GTCTAAGT
18485683 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCTAGTCTAAG
18485708 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACAGAGTTCATTCCTAGTCTAAGT
Found at i:18485889 original size:26 final size:26
Alignment explanation
Indices: 18485853--18485905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18485843 GTTGACTTAG
18485853 GCATACGGAGTTCATCCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
18485879 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
18485905 G
1 G
18485906 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:18486138 original size:183 final size:184
Alignment explanation
Indices: 18485823--18486246 Score: 512
Period size: 183 Copynumber: 2.3 Consensus size: 184
18485813 CGGCTGAGCG
* *
18485823 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGAA
*** * *
18485888 GTTCATTCCTAGTCTAAGATCGAATTGGACCGAAGGTTACGCAGCAGGATTGGCAGCACGCAGGG
66 GTTCATTCCTAGTCTAAGATCGAACCAGACCGAAGGTTACGCAGCAGGATCGACAGCACGCAGGG
* * * *
18485953 GGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTTCGGCCAGCTCAAC-A
131 GGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCCGGCCAGCTCAACGA
* * * * *
18486006 CCCGCACGCTCGTTTCATAGGTTGACTTATGCATATGGAGTTCATCCCCAGTCTCAGCATACGAA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGAA
* * * * * * * *
18486071 GTTCATTCC-AGTCTATGATTGGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGG
66 GTTCATTCCTAGTCTAAGATCGAACCAGACCGAAGGTTAC-GCAGCAGGATCGACAGCACGCAGG
* * * * *
18486135 GGGGACCAGGCCGATGCCCGACTTGCGCATTCTACCTCTCCTGCCAGCTGAGCGA
130 GGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCCGGCCAGCTCAACGA
* * * * *
18486190 -CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTGCATTCCATGTCTAAGC
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGC
18486247 TCCAGTCAGA
Statistics
Matches: 201, Mismatches: 38, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
182 21 0.10
183 179 0.89
184 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGAA
GTTCATTCCTAGTCTAAGATCGAACCAGACCGAAGGTTACGCAGCAGGATCGACAGCACGCAGGG
GGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCCGGCCAGCTCAACGA
Found at i:18486556 original size:155 final size:155
Alignment explanation
Indices: 18486062--18486558 Score: 464
Period size: 158 Copynumber: 3.2 Consensus size: 155
18486052 CCCAGTCTCA
* ** *
18486062 GCATACGAAGTTCATTCCAGTCTATGATTGGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAG
1 GCATACGAAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGATAG
* * * * *
18486127 CACGTAGG-GGGGACCAGGCCGATGCCCGACTTGCGCATTCTACCTCTCCTGCCAGCTGAGCGAC
66 CAC-TCGGAGGGGACC-GG-CGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCC
*
18486191 CGCACGCTCGTTTCATGGGTTGGCTTAG
128 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * *
18486219 GCATAGGGAGTGCATTCCATGTCTAAGCTCCAG-TCAGACTGAGGGTTGTGGTAGCGGGACCGGT
1 GCATACGAAGTTCATTCCA-GTCTAAGAT-CAGACCAGACTGAGGGTTGCGGTAGCAGGATCGAT
* * * * * * * * ** * ** *
18486283 AGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTACGCA-TATGCCTCTTCGATCGGCTCTGCA
64 AGCACTCGGA-GGGGA-CCGGC-GATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCG
* * * *
18486347 CCCGCGCGCTCGTTTTGTGGGTTGACTTAT
126 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
18486377 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGGTAGCAGGATCGATA
1 GCATACGAAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGATA
*
18486442 GCACTCTGGAGGGTACCGG-G-TCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCCC
65 GCACTC-GGAGGGGACCGGCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCCC
*
18486505 GCACGCTAGTTTCGTGGGTTGGCTTAG
129 GCACGCTCGTTTCGTGGGTTGGCTTAG
*
18486532 GCATACGAAGTTCATTCGATGTCTAAG
1 GCATACGAAGTTCATTCCA-GTCTAAG
18486559 CATGCAGAGT
Statistics
Matches: 259, Mismatches: 70, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
154 15 0.06
155 63 0.24
157 23 0.09
158 131 0.51
159 26 0.10
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGATAG
CACTCGGAGGGGACCGGCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18487826 original size:26 final size:26
Alignment explanation
Indices: 18487797--18487849 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18487787 GTTGGCTTAG
18487797 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18487823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18487849 G
1 G
18487850 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18489757 original size:27 final size:27
Alignment explanation
Indices: 18489727--18489785 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 27
18489717 CATGGGTTGA
18489727 CTAAGGCATACAG-AGTTCA-TCCTCAGT
1 CTAAGGCATA-AGAAGTTCATTCCT-AGT
*
18489754 CTAA-GCATATGAAGTTCATTCCTAGT
1 CTAAGGCATAAGAAGTTCATTCCTAGT
18489780 CTAAGG
1 CTAAGG
18489786 TCGGACCGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
25 1 0.04
26 18 0.64
27 9 0.32
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (27 bp):
CTAAGGCATAAGAAGTTCATTCCTAGT
Found at i:18490076 original size:159 final size:157
Alignment explanation
Indices: 18489791--18490091 Score: 363
Period size: 159 Copynumber: 1.9 Consensus size: 157
18489781 TAAGGTCGGA
* *
18489791 CCGGATCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAAGGATCGGGTCGATCCCCGACTTG
1 CCGGACCGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGAAGGATCGGGTCGATCCCCGACTTG
* * * * * * * *
18489856 CGCATTCTACCTCTCCAGCCGGTTGAGCGCCCGAACGCCTGTTTCATGGGTTGGCTTAGGCATAG
66 CACATTATACCTCTCCAGCCGGCTCAACACCCGAACGCCTGTTTCATGGGTTGACTTAGGCATAC
18489921 GGAGTTCATTCCATGTCTAAGCCCCAG
131 GGAGTTCATTCCATGTCTAAGCCCCAG
** * * * *
18489948 CCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACTCAGAAGGGGATCGGGTCGATCCCTGACT
1 CCGGACCGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGAA--GGATCGGGTCGATCCCCGACT
* * * * *
18490013 TGCACATTATGCCTCTCC-GATCGGCTCAACACCCGCATG-CTCGTTTCGTGGGTTGACTTAGGC
64 TGCACATTATACCTCTCCAG-CCGGCTCAACACCCGAACGCCT-GTTTCATGGGTTGACTTAGGC
18490076 ATACGGAGTTCATTCC
127 ATACGGAGTTCATTCC
18490092 TACTCTAAGA
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 35 0.29
158 3 0.03
159 81 0.68
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
CCGGACCGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGAAGGATCGGGTCGATCCCCGACTTG
CACATTATACCTCTCCAGCCGGCTCAACACCCGAACGCCTGTTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAG
Done.