Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 166 of 402
Found at i:18490263 original size:26 final size:26
Alignment explanation
Indices: 18490233--18490283 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18490223 TGGCTTAGAA
18490233 ATACGGAGTTCATT-CCACGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
18490259 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
18490284 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:18490612 original size:26 final size:26
Alignment explanation
Indices: 18490583--18490636 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
18490573 TCGGTTGATT
* * *
18490583 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCACACGAAGTTCATCCCCAATC
*
18490609 TAGGCACACGAAGTTCATTCCCAATC
1 TAGGCACACGAAGTTCATCCCCAATC
18490635 TA
1 TA
18490637 AGATCGGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (26 bp):
TAGGCACACGAAGTTCATCCCCAATC
Found at i:18490641 original size:355 final size:343
Alignment explanation
Indices: 18490233--18490883 Score: 813
Period size: 343 Copynumber: 1.9 Consensus size: 343
18490223 TGGCTTAGAA
* * * *
18490233 ATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
1 ATACGGAGTTCATCCCACGTCTAAGCACACGAAGTTCATTCCCAATCTAAGATCAGACCAGACTG
* * *
18490298 AGGGTTGCAGTAGCAAGACCAGCAGCAGGATCGGCAGCACGTAGGGGGGACCGAGACGATCCCCG
66 AGGG-T----T-GC--GA-CAGCA--A-GATAGGCAGCACGCAAGGGGGACCGAGACGATCCCCG
* * * * * * * *
18490363 GCTTGTGCATTCTACCTCTCTGGCTGGCTGAGCACCCGCCCACTCGTTTCGTGGGTTGGCTTG-G
119 GCTTGCGCATTCTACCTCTCTGGCCGGCTAAGCACCCGCACACACATTTCATGGGTCGG-TTGAG
* **
18490427 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCAGGACCGGC
183 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCAGGACCAAC
** *
18490491 AGCACGCAGAGGGGGATCGAGCTGATCCTCGACTTACGCATTATGCCTCTCTAGCCGACTGAGTG
247 AGCACGCAGAGGGGGATCGAGCCAATCCCCGACTTACGCATTATGCCTCTCTAGCCGACTGAGTG
18490556 CCTGTACGCTCGTTTTGTCGGTTGATTTAGGC
312 CCTGTACGCTCGTTTTGTCGGTTGATTTAGGC
* * ***
18490588 ATACGGAGTTCATCCC-CAGTCTAGGCACACGAAGTTCATTCCCAATCTAAGATCGGATTGGACT
1 ATACGGAGTTCATCCCAC-GTCTAAGCACACGAAGTTCATTCCCAATCTAAGATCAGACCAGACT
* * *
18490652 GAGGGTTGCGACAGCAAGATAGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGGGTTGCGCATT
65 GAGGGTTGCGACAGCAAGATAGGCAGCACGCAAGGGGGACCGAGACGATCCCCGGCTTGCGCATT
* * *
18490717 CTGCCTCTCTGGCCGGCTAAGCACCCGCACGCACATTTCATGGGTCGGTTGAGGCATAGGGAGTT
130 CTACCTCTCTGGCCGGCTAAGCACCCGCACACACATTTCATGGGTCGGTTGAGGCATACGGAGTT
* *
18490782 CATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCAACAGCACGTAGAGGG
195 CATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAGAGGG
* * *
18490847 GGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCT
260 GGATCGAGCCAATCCCCGACTTACGCATTATGCCTCT
18490884 TCGGTAGGCT
Statistics
Matches: 256, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
342 3 0.01
343 181 0.71
344 2 0.01
346 5 0.02
347 2 0.01
349 2 0.01
350 1 0.00
354 2 0.01
355 58 0.23
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (343 bp):
ATACGGAGTTCATCCCACGTCTAAGCACACGAAGTTCATTCCCAATCTAAGATCAGACCAGACTG
AGGGTTGCGACAGCAAGATAGGCAGCACGCAAGGGGGACCGAGACGATCCCCGGCTTGCGCATTC
TACCTCTCTGGCCGGCTAAGCACCCGCACACACATTTCATGGGTCGGTTGAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAGAGGGG
GATCGAGCCAATCCCCGACTTACGCATTATGCCTCTCTAGCCGACTGAGTGCCTGTACGCTCGTT
TTGTCGGTTGATTTAGGC
Found at i:18490913 original size:343 final size:342
Alignment explanation
Indices: 18490320--18490953 Score: 826
Period size: 343 Copynumber: 1.8 Consensus size: 342
18490310 GCAAGACCAG
* * * * *
18490320 CAGCAGGATCGGCAGCACGTAGGGGGGACCGAGACGATCCCCGGCTTGTGCATTCTACCTCTCTG
1 CAGCAAGATAGGCAGCACGCAAGGGGGACCGAGACGATCCCCGGCTTGCGCATTCTACCTCTCTG
* * * * * * *
18490385 GCTGGCTGAGCACCCGCCCACTCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTC
66 GCCGGCTAAGCACCCGCACACACATTTCATGGGTCGGCTTGGGCATACGGAGTTCATTCCATGTC
* ** **
18490450 TAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGATCGAGCTG
131 TAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAGAGGGGGATCGAGCCA
* * ** * * *
18490515 ATCCTCGACTTACGCATTATGCCTCTCTAGCCGACTGAGTGCCTGTACGCTCGTTTTGTCGGTTG
196 ATCCCCGACTTACGCATTATGCCTCTCTAG-CGACTCAACGCCTGCACACTCGTTTCGTCGGTTG
*
18490580 ATTTAGGCATACGGAGTTCATCCCCAGTCTAGGCACACGAAGTTCATTCCCAATCTAAGATCGGA
260 ACTTAGGCATACGGAGTTCATCCCCAGTCTAGGCACACGAAGTTCATTCCCAATCTAAGATCGGA
18490645 TTGGACTGAGGGTTGCGA
325 TTGGACTGAGGGTTGCGA
* * * *
18490663 CAGCAAGATAGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGGGTTGCGCATTCTGCCTCTCTG
1 CAGCAAGATAGGCAGCACGCAAGGGGGACCGAGACGATCCCCGGCTTGCGCATTCTACCTCTCTG
* *
18490728 GCCGGCTAAGCACCCGCACGCACATTTCATGGGTCGG-TTGAGGCATAGGGAGTTCATTCCATGT
66 GCCGGCTAAGCACCCGCACACACATTTCATGGGTCGGCTTG-GGCATACGGAGTTCATTCCATGT
* * *
18490792 CTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCAACAGCACGTAGAGGGGGATCGGGC
130 CTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAGAGGGGGATCGAGC
* * *
18490856 CAATCCCCGGCTTGCGCATTATGCCTCTTCGGTAG-G-CTCAACGCCTGCACACTCGTTTCGTGG
194 CAATCCCCGACTTACGCATTATGCCTC-TC--TAGCGACTCAACGCCTGCACACTCGTTTCGTCG
* * *
18490919 GTTGACTTATGTATACGGAGTTCATTCCCAGTCTA
256 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
18490954 AGATTGGACC
Statistics
Matches: 246, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
342 4 0.02
343 236 0.96
344 3 0.01
346 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (342 bp):
CAGCAAGATAGGCAGCACGCAAGGGGGACCGAGACGATCCCCGGCTTGCGCATTCTACCTCTCTG
GCCGGCTAAGCACCCGCACACACATTTCATGGGTCGGCTTGGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAGAGGGGGATCGAGCCA
ATCCCCGACTTACGCATTATGCCTCTCTAGCGACTCAACGCCTGCACACTCGTTTCGTCGGTTGA
CTTAGGCATACGGAGTTCATCCCCAGTCTAGGCACACGAAGTTCATTCCCAATCTAAGATCGGAT
TGGACTGAGGGTTGCGA
Found at i:18490974 original size:159 final size:158
Alignment explanation
Indices: 18490768--18491113 Score: 340
Period size: 158 Copynumber: 2.2 Consensus size: 158
18490758 GGGTCGGTTG
* **** * * ** * *
18490768 AGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCA
1 AGGCATACGGAGTTCATTCCATGTCTAAGATTGGA-CCGGACCAAGGGTTACGACAGCAGGACCA
* * * *
18490832 ACAGCACGTAGAGGGG-GATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGG-TAGGCTC
65 ACAGCACGCAG-GGGGAAAT-GGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGGCTA-GCTC
* *
18490895 AACGCCTGCACACTCGTTTCGTGGGTTGACTT
127 AACGCCCGCACACTCGTTCCGTGGGTTGACTT
* * * *
18490927 ATGTATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCAAGGGTTACGACAGCAGGATCG
1 AGGCATACGGAGTTCATT-CCATGTCTAAGATTGGACCGGACCAAGGGTTACGACAGCAGGACCA
* * * * * **
18490991 ACAGCATGCAGGGGGAAATGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGGCTAGCTGAGT
65 ACAGCACGCAGGGGGAAATGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGGCTAGCTCAAC
* * *
18491056 GCCCGTACGCTCGTTCCGTGGGTTGGCTT
130 GCCCGCACACTCGTTCCGTGGGTTGACTT
18491085 AGGCATACGGAGTTCATTCCATGTCTAAG
1 AGGCATACGGAGTTCATTCCATGTCTAAG
18491114 CATACAGAGT
Statistics
Matches: 149, Mismatches: 33, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 86 0.58
159 56 0.38
160 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGGCATACGGAGTTCATTCCATGTCTAAGATTGGACCGGACCAAGGGTTACGACAGCAGGACCAA
CAGCACGCAGGGGGAAATGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGGCTAGCTCAACG
CCCGCACACTCGTTCCGTGGGTTGACTT
Found at i:18491116 original size:26 final size:26
Alignment explanation
Indices: 18491087--18491139 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18491077 GTTGGCTTAG
*
18491087 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18491113 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18491139 G
1 G
18491140 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18491229 original size:11 final size:11
Alignment explanation
Indices: 18491209--18491241 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
18491199 CCCAGGGCAC
18491209 CATCGCCGGAG
1 CATCGCCGGAG
*
18491220 CATCGTCGGAG
1 CATCGCCGGAG
18491231 CATCGCCGGAG
1 CATCGCCGGAG
18491242 AGCCTAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.36, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:18491856 original size:26 final size:26
Alignment explanation
Indices: 18491819--18491871 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18491809 GTTGACTTAG
18491819 GCATACGAAGTTAATCCCTAGTCTAA
1 GCATACGAAGTTAATCCCTAGTCTAA
* *
18491845 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTAATCCCTAGTCTAA
18491871 G
1 G
18491872 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATCCCTAGTCTAA
Found at i:18492310 original size:158 final size:156
Alignment explanation
Indices: 18491852--18492346 Score: 503
Period size: 158 Copynumber: 3.1 Consensus size: 156
18491842 TAAGCATACA
* * * * * * *
18491852 GAGTTCATTCC-TAGTCTAAGATCGGATCGGACCGAAGGTGGCGGCAGTAGGATCGACAGCATGC
1 GAGTTCATTCCAT-GTCTAAGATCGTACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCATGC
* * * * * * **
18491916 AGGAGGGACCGAGCCGATCCCCAACTTGCGCATTCTACCTCTCCGGCCATCTGAGCGCCCGCACG
65 AGGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCCCGCACG
* * *
18491981 CACGTTTTGTGGGTTGGCTTGGGCATAG
129 CTCGTTTCGTGGGTTGGCTTAGGCATAG
* * * ** * * *
18492009 CGAGTTCATTCCATGTCTAA-TTCCTAGCTGGA-TCGAGGGTTGTAGCAGCGGGACCGGTAGCAT
1 -GAGTTCATTCCATGTCTAAGATCGTA-CCGGACT-GAGGGTTGCGGCAGCAGGATCGATAGCAT
* * * * * * *
18492072 GCAGAGGGGGACCAGACCGATCCCTGGCTTGCGTATTCTGCCTCTCTGTCCGGCTCAGTGCCCGC
63 GCAG-GGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGT-CGGCTGAGCGCCCGC
** *
18492137 ACGCTTATTTCGTGGGTTGACTTAGGCATATG
126 ACGCTCGTTTCGTGGGTTGGCTTAGGCATA-G
*
18492169 GAGTTCATTCCCA-GTCTAAGATCGTACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCGTACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCATGC
* * *
18492233 AGGGGGGATCGGGCCAATCCCTAGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
65 AGGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCGCCCGCACG
18492298 CTCGTTTCGTGGGTTGGCTTAGGCATACG
129 CTCGTTTCGTGGGTTGGCTTAGGCATA-G
18492327 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
18492347 CATACGGAGT
Statistics
Matches: 267, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 137 0.51
159 115 0.43
160 9 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
GAGTTCATTCCATGTCTAAGATCGTACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCATGCA
GGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATAG
Found at i:18492356 original size:26 final size:26
Alignment explanation
Indices: 18492320--18492372 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18492310 GTTGGCTTAG
18492320 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18492346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18492372 G
1 G
18492373 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18493205 original size:158 final size:156
Alignment explanation
Indices: 18492728--18493227 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 156
18492718 CAGTCTAAGA
* * * * * *
18492728 ATACAGAGTTCATTCCCA-GTCTAAGATCGGATGGGACCGAGGGTTGTGACAGCAGGACCCGCAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGA-CAGCAG
* * * * * * *
18492792 CACGCAGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGCTGAGCGCCC
64 CACGCAGGGGGGATCGA-CCGATCCCTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCC
18492857 GCACGAC-CATTTCGTGGGTTGGCTTACGC
128 GCACG-CTCATTTCGTGGGTTGGCTTACGC
* * ** * * *
18492886 ATAGGGAGTTCATTCCATTTCTAAGCCCTA-ACCGGATCGAGGGTTGTGGCAGCGGGACTGGCAG
1 ATACGGAGTTCATTCCATGTCTAAGATC-AGATCGGATCGAGGGTTGTGGCAGCAGGAC-AGCAG
* * * * *
18492950 CACGCAGAGGGGGACTGGGCCGAT-CCTCGACTTGCGCATTATGCCTCT-TCGGCTGGCTCAGCA
64 CACGCAG-GGGGGA-TCGACCGATCCCT-GACTTGCGCATTCTGCCTCTCT-GGCCGGCTGAGCA
* * * *
18493013 CCTGCACACTCATTTCGTGGGTTGACTTATGC
125 CCCGCACGCTCATTTCGTGGGTTGGCTTACGC
* * * *
18493045 ATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGAATCGAGGGTTGCGGCAGCAGAATCAACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGA-CAGCAG
* *
18493109 CACGCAGGGGGGATCAGACCGATCCCTGACTTGCGCATTCTACCTCTCTGGCCGGTTGAGCACCC
64 CACGCAGGGGGGATC-GACCGATCCCTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCC
* * *
18493174 GTACGCTCATTTCATGGGTTGGCTTAGGC
128 GCACGCTCATTTCGTGGGTTGGCTTACGC
18493203 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
18493228 CATACGGAGT
Statistics
Matches: 275, Mismatches: 52, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
157 8 0.03
158 143 0.52
159 118 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGACAGCAGCA
CGCAGGGGGGATCGACCGATCCCTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCA
CGCTCATTTCGTGGGTTGGCTTACGC
Found at i:18493252 original size:26 final size:26
Alignment explanation
Indices: 18493201--18493253 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18493191 GTTGGCTTAG
*
18493201 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
18493227 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
18493253 G
1 G
18493254 ATTTTGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:18497431 original size:26 final size:26
Alignment explanation
Indices: 18497401--18497453 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18497391 GTTGACTTAG
* *
18497401 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18497427 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18497453 G
1 G
18497454 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18497893 original size:159 final size:156
Alignment explanation
Indices: 18497427--18497928 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 156
18497417 CCCATTCTAA
* ** * * * * *
18497427 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCGGACTGAGGGTTACGACAGCAAGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGA-TCAACCGGAC-GAGGGTTGCGGCAGTAGGATCGAC
* * * **
18497491 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGCCAGCTGAGCGC
63 AGCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCGC
* *
18497556 CCGCACGCCCATTTCATGGGTTGCCTTAG
128 CCGCACGCTCATTTCATGGGTTGACTTAG
* ** * * * * * *
18497585 GCATAAGGAGTTCATTCCATGTCTAAGCGCCAGCTGGACCGAGGGTTGTGGTAGTGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAACCGGA-CGAGGGTTGCGGCAGTAGGATCGACA
* * * * *
18497650 GTACG-AGAGGGGGACCGGGCCGAT-CCTCGGCTTGCACATTATGCCTCTTCAGCTGGCTCAGCG
64 GCACGCA-AGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCG
* *
18497713 CCCGCACGCTCGTTTCATGGGTTGACTTAT
127 CCCGCACGCTCATTTCATGGGTTGACTTAG
* * *
18497743 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAATCGGATCGAAGGTTGCGGCAGTAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AACCGGA-CGAGGGTTGCGGCAGTAGGATCGAC
* * * *
18497807 AGCACGCAAGGGCAGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCG
63 AGCACGCAAGGG-GGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCG
* * *
18497872 CCCGCATGCTCATTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCATTTCATGGGTTGACTTAG
*
18497902 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18497929 CCCCAGTCGG
Statistics
Matches: 274, Mismatches: 59, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 7 0.03
158 172 0.63
159 92 0.34
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACCGGACGAGGGTTGCGGCAGTAGGATCGACAGC
ACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCGCCCG
CACGCTCATTTCATGGGTTGACTTAG
Found at i:18497955 original size:159 final size:158
Alignment explanation
Indices: 18497490--18497961 Score: 531
Period size: 158 Copynumber: 3.0 Consensus size: 158
18497480 GCAAGATCGG
* * * **
18497490 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGCCAGCTGAGCG
1 CAGCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCG
* * *
18497555 CCCGCACGCCCATTTCATGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCGCCAG-C
66 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
18497619 TGGACCGAGGGTTGTGGTAGTGGGACCGA
131 -GGACTGAGGGTTGTGGCAGTAGGACCGA
* * * * *
18497648 CAGTACG-AGAGGGGGACCGGGCCGAT-CCTCGGCTTGCACATTATGCCTCTTCAGCTGGCTCAG
1 CAGCACGCA-AGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAG
* * * ** *
18497711 CGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAA
64 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCCA
* * * **
18497775 ATCGGA-TCGAAGGTTGCGGCAGTAGGATTGA
128 GTCGGACT-GAGGGTTGTGGCAGTAGGACCGA
* * * *
18497806 CAGCACGCAAGGGCAGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGC
1 CAGCACGCAAGGG-GGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAGC
* * * *
18497871 GCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGT
65 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGT
*
18497936 CGGACTGAGGGTTGTGGCAGCAGGAC
130 CGGACTGAGGGTTGTGGCAGTAGGAC
18497962 TGGCAGTGGG
Statistics
Matches: 255, Mismatches: 49, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 133 0.52
159 115 0.45
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
CAGCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCG
CCCGCACGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC
GGACTGAGGGTTGTGGCAGTAGGACCGA
Found at i:18498122 original size:26 final size:26
Alignment explanation
Indices: 18498086--18498138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18498076 GTTGAGTTAG
18498086 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18498112 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18498138 G
1 G
18498139 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18498420 original size:159 final size:158
Alignment explanation
Indices: 18498112--18498422 Score: 387
Period size: 159 Copynumber: 2.0 Consensus size: 158
18498102 CCCAGTCTAA
* * *
18498112 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
* * **
18498177 ACACGTAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTTGACCGGTCGAGTGCC
66 ACACGTAGGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCAGACCGGTCGAGTGCC
* *
18498242 CGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CACACGCCCATTTCGTGGGTTGGCTTAG
* * * *
18498270 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCAAGGGTTGTGGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGA
* **
18498333 CAACATGTAGAGGGGGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCAG-CCGGCTC-A
64 CAACACGTAG-GGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCT-CAGACCGG-TCGA
* *
18498396 GTGCCCACACGCTCATTTTGTGGGTTG
126 GTGCCCACACGCCCATTTCGTGGGTTG
18498423 ACTTGCGCAT
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
157 3 0.02
158 58 0.45
159 66 0.51
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
ACACGTAGGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCAGACCGGTCGAGTGCC
CACACGCCCATTTCGTGGGTTGGCTTAG
Found at i:18500052 original size:154 final size:156
Alignment explanation
Indices: 18499592--18500052 Score: 468
Period size: 159 Copynumber: 2.9 Consensus size: 156
18499582 ATTGGATCGG
18499592 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGC
1 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA-GGGGGACCGGG-CGATCCCCGACTTGCGC
* * * *
18499657 ATTCTGCATCTCCGGCCGACTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGA
64 ATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* * ** * ***
18499722 GTTCATTCCATGCCTAATCTCTAGCTGG
129 GTTCAATCCATGACTAAGATCGAGCCAA
* * * * * * *
18499750 ACCGAGGGTTGTGGCAGCGGGAACGGCAGCATGTAGAGGTGGACCGGGCTGATCCCCGGCTTGCG
1 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GG-GGACCGGGC-GATCCCCGACTTGCG
* * * * * *
18499815 CATTATGCCTCTCCGGTC-AGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTTGGCATACG
63 CATTCTGCCTCTCCGGCCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* *
18499879 GAG-TGAATTCCCA-GTCTAAGATCG-GACCAA
127 GAGTTCAA-T-CCATGACTAAGATCGAG-CCAA
* *
18499909 ACTGAGGGTTGCGGCAACAGGATCGACAGCACGCATGGGGGACC-GG-G-TCCCCGACTTGCGCA
1 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA-GGGGGACCGGGCGATCCCCGACTTGCGCA
* ** * * *
18499971 TTCTGCCTCTCTGGCCGACTGAGCGCCCGTTCGCTCGTTTCGTGGGTTGGCTTAGGTATACGAAG
65 TTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
18500036 TTCAATCCATGACTAAG
130 TTCAATCCATGACTAAG
18500053 CATATGGAGT
Statistics
Matches: 243, Mismatches: 49, Indels: 26
0.76 0.15 0.08
Matches are distributed among these distances:
153 3 0.01
154 72 0.30
155 5 0.02
157 3 0.01
158 41 0.17
159 115 0.47
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (156 bp):
ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACCGGGCGATCCCCGACTTGCGCAT
TCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCAATCCATGACTAAGATCGAGCCAA
Found at i:18500412 original size:26 final size:26
Alignment explanation
Indices: 18500382--18500434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18500372 GCTGACTTAG
*
18500382 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
18500408 GCATACAAAGTTGATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
18500434 G
1 G
18500435 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:18500880 original size:157 final size:156
Alignment explanation
Indices: 18500428--18500907 Score: 550
Period size: 158 Copynumber: 3.0 Consensus size: 156
18500418 TTGATTCCCA
* *
18500428 GTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGAACGCAGGGGGGACCGGAC
1 GTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGGGGGGACCGG-C
* * * * * * * * *
18500493 CGATCCCTGGCTTACGAATTCTGCCTCTCCGGTCGACTGAGCACCCACACGCCCGTTTCGTGGGT
65 TGATCCC-GACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
18500558 TGGCTTAGGCATAGGGAGTTCATTCCAT
129 TGGCTTAGGCATACGGAGTTCATTCCAT
** * * * * *
18500586 GTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCGGGACCGGCAGCA-AGCAGAGGGGACCGG
1 GTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACA-CAGGGGGGACC-G
* * * * * *
18500649 GCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCGCCCGCACGTTCGTTTCGTGG
63 GCTGATCCCGA-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * **
18500714 GTTGACTTAGGCATATGGAGTTCGTTCCCG
127 GTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * ** *
18500744 GTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCAAGATCGATAGCACACAGGGGGGACTGGCT
1 GTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGGGGGGACCGGCT
*
18500809 GATCTCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
66 GATC-CCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
18500874 GGCTTAGGCATACGGAGTTCATTCCAT
130 GGCTTAGGCATACGGAGTTCATTCCAT
18500901 GTCTAAG
1 GTCTAAG
18500908 CATACGGAGT
Statistics
Matches: 261, Mismatches: 54, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 90 0.34
158 165 0.63
159 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.21
Consensus pattern (156 bp):
GTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGGGGGGACCGGCT
GATCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCAT
Found at i:18500917 original size:26 final size:26
Alignment explanation
Indices: 18500881--18500933 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18500871 GTTGGCTTAG
18500881 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
18500907 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
18500933 G
1 G
18500934 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:18508920 original size:26 final size:26
Alignment explanation
Indices: 18508891--18508943 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18508881 GTTGACTTAG
**
18508891 GCATACAGAGTTTGTCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18508917 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18508943 G
1 G
18508944 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18509397 original size:158 final size:156
Alignment explanation
Indices: 18508917--18509409 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 156
18508907 CCCAGTCTAA
* * * * * **
18508917 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
18508982 GCACGCAGGGGGGACCGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCGA-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
*
18509047 C-ACACGCCCGTTTCGTGGGTTGGCTTAG
130 CGA-ACGCTCGTTTCGT-GGTTGGCTTAG
* * * ** * * *
18509075 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAACCGAACCGAGGGTTGTGCCAGCGGGATCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGAACAG-ACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
18509138 CAGCATGCAGAAGGGGATCGGGTCGATCCCCGACTTGTGCATTATGCCTCTCCGACCGGCTCAGT
64 CAGCACGCAG-GGGGGATCGGGTCGAT-CCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * **
18509203 GCCCGAATGCTCATTTCGTGGTTTAACTTAG
127 GCCCGAACGCTCGTTTCGTGG-TTGGCTTAG
* * *
18509234 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
18509299 GTACGCAGGGGGGATAGGGTC-AGTCCTCGACTTACGCATTCTACCTCTCCGGTCGGCTGAGCGC
66 GCACGCAGGGGGGATCGGGTCGA-TCC-CGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * *
18509363 CTGTACGCTCGTTTCATAGGTTGGCTTAG
129 CCGAACGCTCGTTTCGT-GGTTGGCTTAG
18509392 GCATAC-AGAGTTCATTCC
1 GCATACGA-AGTTCATTCC
18509410 ATGCCTAAGC
Statistics
Matches: 265, Mismatches: 58, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 10 0.04
158 129 0.49
159 114 0.43
160 12 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GAACGCTCGTTTCGTGGTTGGCTTAG
Found at i:18509418 original size:158 final size:157
Alignment explanation
Indices: 18509016--18509419 Score: 404
Period size: 159 Copynumber: 2.5 Consensus size: 157
18509006 CCCTAGCTTG
*
18509016 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCC-ACACGCCCGTTTCGTGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGA-ACGCTCGTTTCGT-GGTTGGCTTAGGCATA
* * * *
18509080 GGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGCCAGCGGGATCGACAGCATG
64 -CGAGTTCATTCCATGTCTAAGCCCCAACAGAACCGAGGGTTGTGCCAGCAGGATCGACAGCACG
* *
18509145 CAGAAGGGGATCGGGTCGATCCCCGACTTG
128 CAGAAGGGGATAGGGTCGATCCCCGACTTA
* * * * * * * **
18509175 TGCATTATGCCTCTCCGACCGGCTCAGTGCCCGAATGCTCATTTCGTGGTTTAACTTAGGCATAC
1 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAACGCTCGTTTCGTGG-TTGGCTTAGGCATAC
* ** * * * *
18509240 GAAGTTCATTCCCA-GTCTAAGATCGGATCAG-ACCGAGGGTTGTGGCAGTAGGATCGACAGTAC
65 G-AGTTCATT-CCATGTCTAAG-CCCCAACAGAACCGAGGGTTGTGCCAGCAGGATCGACAGCAC
* *
18509303 GCAG-GGGGGATAGGGTC-AGTCCTCGACTTA
127 GCAGAAGGGGATAGGGTCGA-TCCCCGACTTA
* * * * *
18509333 CGCATTCTACCTCTCCGGTCGGCTGAGCGCCTGTACGCTCGTTTCATAGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAACGCTCGTTTCGT-GGTTGGCTTAGGCATAC
*
18509398 AGAGTTCATTCCATGCCTAAGC
65 -GAGTTCATTCCATGTCTAAGC
18509420 ATACGAAGTT
Statistics
Matches: 195, Mismatches: 41, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 85 0.44
159 98 0.50
160 8 0.04
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAACGCTCGTTTCGTGGTTGGCTTAGGCATACG
AGTTCATTCCATGTCTAAGCCCCAACAGAACCGAGGGTTGTGCCAGCAGGATCGACAGCACGCAG
AAGGGGATAGGGTCGATCCCCGACTTA
Found at i:18509617 original size:26 final size:26
Alignment explanation
Indices: 18509587--18509639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18509577 GTTGACTTAG
*
18509587 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18509613 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18509639 G
1 G
18509640 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18509837 original size:12 final size:12
Alignment explanation
Indices: 18509820--18509850 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
18509810 TGAGGGTTGT
18509820 GGCAGCAAGATC
1 GGCAGCAAGATC
*
18509832 GGCAGCAGGATC
1 GGCAGCAAGATC
18509844 GGCAGCA
1 GGCAGCA
18509851 TGCAGAGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.39, T:0.06
Consensus pattern (12 bp):
GGCAGCAAGATC
Found at i:18510219 original size:329 final size:329
Alignment explanation
Indices: 18509613--18510223 Score: 789
Period size: 329 Copynumber: 1.9 Consensus size: 329
18509603 CCCAGTCTAA
* * * * *
18509613 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAACAAGATCGATA
* * * * * ** * * *
18509678 GCACGCAGGGGGGACTGGGTCGGTCCCTGACTTTTGCGTTCTGCCTCTCTGATCGACTGAGCTCC
66 GCACACAGGGGGGACCGAGTCGGTCCCCGACCTACGCATTCTGCCTCTCGGATCGACTGAGCACC
* * * * *
18509743 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGTCGG
131 CGCACGCCCGTTTCATGGGTTGGCATAGGCATACGAAGTTCATTCCACGTCTAAGCCCCAGTCGG
* ** *
18509808 ACTGAGGGTTGTGGCAGCAAGATCGGCAGCAGGATCGGCAGCATGCAGAGGGTTACCGGGTTGAT
196 ACTGAGGGTTGTGGCAGCAAGACCGGCAGCAGGATCGGCAGCACACAGAGGGTGACCGGGTTGAT
* * *
18509873 CGTCGGCTTGCGCATTATGCCTTTTCGATCGGTTGAGTGCCCACACGATCGTTTCATGGGTTGAC
261 CCTCGACTTACGCATTATGCCTTTTCGATCGGTTGAGTGCCCACACGATCGTTTCATGGGTTGAC
18509938 TTAG
326 TTAG
* *
18509942 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAAGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAACAAGATCGATA
* * * *
18510007 GCACACAGGGGGGACCGAGTTGGTCCCCGGCCTACGCATTCTGCCTCTTCGGCT-GGCTGAGCAC
66 GCACACAGGGGGGACCGAGTCGGTCCCCGACCTACGCATTCTGCCTC-TCGGATCGACTGAGCAC
* * *
18510071 CCGCACGCCCGTTTCATGGGTTGGCATAGGCGTAGGGAGTTCATTCCACGTCTAAGCCCCAGTCG
130 CCGCACGCCCGTTTCATGGGTTGGCATAGGCATACGAAGTTCATTCCACGTCTAAGCCCCAGTCG
* * * *
18510136 GACTGAGGGTTGTGGTAGCAGGACCGGCAGC-GAGATCGGTAGCACACAGAAGGG-GACTGGGTT
195 GACTGAGGGTTGTGGCAGCAAGACCGGCAGCAG-GATCGGCAGCACACAG-AGGGTGACCGGGTT
*
18510199 GATCC-CTGACTTATGCATTATGCCT
258 GATCCTC-GACTTACGCATTATGCCT
18510224 CTCCTGTCGG
Statistics
Matches: 237, Mismatches: 41, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
328 2 0.01
329 227 0.96
330 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (329 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAACAAGATCGATA
GCACACAGGGGGGACCGAGTCGGTCCCCGACCTACGCATTCTGCCTCTCGGATCGACTGAGCACC
CGCACGCCCGTTTCATGGGTTGGCATAGGCATACGAAGTTCATTCCACGTCTAAGCCCCAGTCGG
ACTGAGGGTTGTGGCAGCAAGACCGGCAGCAGGATCGGCAGCACACAGAGGGTGACCGGGTTGAT
CCTCGACTTACGCATTATGCCTTTTCGATCGGTTGAGTGCCCACACGATCGTTTCATGGGTTGAC
TTAG
Found at i:18510820 original size:26 final size:26
Alignment explanation
Indices: 18510783--18510835 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18510773 GTTGGCTTAG
*
18510783 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
18510809 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18510835 G
1 G
18510836 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18511038 original size:514 final size:512
Alignment explanation
Indices: 18510408--18511519 Score: 1443
Period size: 514 Copynumber: 2.2 Consensus size: 512
18510398 CTCTGGCTTA
* * * *
18510408 GCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
1 GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
18510473 GAGTTCATTCCATGTCTAAGCCCTAGCCGGACGAAGGGTTGTGGCAGCGGGACTGGTAGCACGCA
66 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACGAAGGGTTGTGGCAGCGGGACTGGCAGCACGCA
** * *
18510538 AAGGGGGACCGGG-TCGATCCCCGACTTGCACATTATGCCTCTTTAGTCGGCTCAACACCCGCAC
131 AAGGGGGACCGGGCT-GATCCCCGACTTGCACATTATGCCTCTCCAGCCGGCGCAACACCCGCAC
* * * * *
18510602 GCTCGTTTCATGGTTTGACTTATGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
195 GCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCGAATCAAACAG
* * * *
18510666 AGGGTTGC-GACAGTAGGATCGATAGCACCCAGAGGGGATCGGATC-AAT-CCTCGGCTTACGCA
259 AGGGTTGCAGACA-CAGGATCGACAGCACCCAGAGGGGA-CCGAGCGAATACC-CGGCTTACGCA
** ** *
18510728 TTCTGCCTCTCCGGTCGGTTGAGTGCCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAG
321 TTCTGCCTCTCCGACCGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
*
18510793 TTCATTCCATGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAA-GGT
386 TTCATTCCATGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGATCT-GAC-CAAGGGT
* * * * * * * *
18510855 TGCTGCCGCAGGACCAGTAGAAGGATTGGCAGCACGCAGGGGAGGATCAG-GTCGATCCTCGGCT
448 TGCGGCAGCAAGACCAGCAGAAGGATCGACAGCACGCAGGGG-GG-TCAGACT-GATCCCCGGCT
18510919 TGC
510 TGC
* * * * *
18510922 GCATTCTGCCTCTCCGCCCGGTTGAGCTCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
18510987 GAGTTCAGTCCATGTCTAAGCCCCAGTCGGACTG-AGGGTTGTGGTAGCGGGACTGGCAGCACGC
66 GAGTTCATTCCATGTCTAAGCCCCAGCCGGAC-GAAGGGTTGTGGCAGCGGGACTGGCAGCACGC
* * * * * ** *
18511051 AGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCGCAATGCCTGCAC
130 AAAGGGGGACCGGGCTGATCCCCGACTTGCACATTATGCCTCTCCAGCCGGCGCAACACCCGCAC
* * * *
18511116 GCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAATATTGAATCAAACAGA
195 GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAAACAGA
* * ** * *
18511181 TGGTTGCAGTCACAGGATCGACAGCATGCAGGGGGGACCGAGCGAATACCCGGCTTGCGCATTCT
260 GGGTTGCAGACACAGGATCGACAGCACCCAGAGGGGACCGAGCGAATACCCGGCTTACGCATTCT
*
18511246 GCCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
325 GCCTCTCCGACCGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
*
18511311 TTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCTGACCAAGGGTTGGGGCA
390 TTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCTGACCAAGGGTTGCGGCA
* * *
18511376 GCAAGTCCAGCAGTAGGATCGACAGCACGTAGGGGGGTCAGACTGATCCCCGGCTTGC
455 GCAAGACCAGCAGAAGGATCGACAGCACGCAGGGGGGTCAGACTGATCCCCGGCTTGC
* * *
18511434 GCATTCTGCCTCTCCGACTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
18511499 GAGTTCATTCCATGTCTAAGC
66 GAGTTCATTCCATGTCTAAGC
18511520 ATACGAAGTT
Statistics
Matches: 516, Mismatches: 72, Indels: 22
0.85 0.12 0.04
Matches are distributed among these distances:
512 94 0.18
513 9 0.02
514 402 0.78
515 11 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (512 bp):
GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCGGACGAAGGGTTGTGGCAGCGGGACTGGCAGCACGCA
AAGGGGGACCGGGCTGATCCCCGACTTGCACATTATGCCTCTCCAGCCGGCGCAACACCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAAACAGAG
GGTTGCAGACACAGGATCGACAGCACCCAGAGGGGACCGAGCGAATACCCGGCTTACGCATTCTG
CCTCTCCGACCGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCTGACCAAGGGTTGCGGCAG
CAAGACCAGCAGAAGGATCGACAGCACGCAGGGGGGTCAGACTGATCCCCGGCTTGC
Found at i:18511333 original size:26 final size:26
Alignment explanation
Indices: 18511297--18511349 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18511287 GTTGGCTTAG
*
18511297 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18511323 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18511349 G
1 G
18511350 ATCGGATCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18511529 original size:26 final size:26
Alignment explanation
Indices: 18511492--18511544 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18511482 GTTGGCTTAG
*
18511492 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
18511518 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
18511544 G
1 G
18511545 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:18511532 original size:195 final size:196
Alignment explanation
Indices: 18511194--18511546 Score: 568
Period size: 195 Copynumber: 1.8 Consensus size: 196
18511184 TTGCAGTCAC
* *
18511194 AGGATCGACAGCATGCAGGGGGGACCGAGCGAATACCCGGCTTGCGCATTCTGCCTCTCCGACCG
1 AGGATCGACAGCACGCAGGGGGGACAGAGCGAATACCCGGCTTGCGCATTCTGCCTCTCCGACCG
* *
18511259 ACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
18511324 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCTGACCAAGGGTTGGGGCAGCAAGTCCAGCAG
131 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCTGACCAAGGGTTGGGGCAGCAAGTCCAGCAG
18511389 T
196 T
* * * *
18511390 AGGATCGACAGCACGTAGGGGGGTCAGA-CTG-ATCCCCGGCTTGCGCATTCTGCCTCTCCGACT
1 AGGATCGACAGCACGCAGGGGGGACAGAGC-GAATACCCGGCTTGCGCATTCTGCCTCTCCGACC
* *
18511453 GGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
18511518 GCATAC-GAAGTTCATTCCTAGTCTAAGAT
130 GCATACAG-AGTTCATTCCCAGTCTAAGAT
18511547 TTTGAGCCGC
Statistics
Matches: 144, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
194 1 0.01
195 118 0.82
196 25 0.17
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (196 bp):
AGGATCGACAGCACGCAGGGGGGACAGAGCGAATACCCGGCTTGCGCATTCTGCCTCTCCGACCG
ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCGGATCTGACCAAGGGTTGGGGCAGCAAGTCCAGCAG
T
Found at i:18512383 original size:158 final size:155
Alignment explanation
Indices: 18512174--18512727 Score: 455
Period size: 157 Copynumber: 3.4 Consensus size: 155
18512164 CCTGTCCGAC
* * * * * **
18512174 CGACTGAGCACCCGTACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCA-GTCTA
* * *
18512239 AGCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGAAAAGGGAGATCGAGTCGATC
65 AGCCCAGACAGACAGAGGGTTGTGGCAGCGGGACCGACAGCACG-AAAGGGGGA-CGAGTCGATC
*
18512304 CCCGACTTGCGCATTATGCCTCTCCGGT
128 CCCGACTTGAGCATTATGCCTCTCCGGT
* *
18512332 CGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCAGTATAA
1 CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCAGTCTAA
** * * *** ** * ** * * *
18512397 GATCAGACTGGACTGAGGGTTGCAACAGTAGGATCGGTAGCACGTAGGGGGGACCAGGTCGATCC
66 GCCCAGAC-AGACAGAGGGTTGTGGCAGCGGGACCGACAGCACGAAAGGGGGACGA-GTCGATCC
* *
18512462 CCGGCTTGAGCATTCTGCCTCTCCGGT
129 CCGACTTGAGCATTATGCCTCTCCGGT
* * * * * *
18512489 CGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCACGTCTA
1 CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCA-GTCTA
* * * *
18512554 AGCCCCAGCCAAACAAAGGGTTGTGGCAGCAGGATCGGTAGCAGGATCGACAGCACGCAGAGGGG
65 AG-CCCAGACAGACAGAGGGTTGTGGCAGC--G---GG-A-C-----CGACAGCACG-AAAGGGG
* * *
18512619 GACCG-GGCTGATCCCCGACTTGAGCATCATGCCTCTCCGAT
116 GA-CGAGTC-GATCCCCGACTTGAGCATTATGCCTCTCCGGT
* * * *
18512660 CGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGAAGTTCATCCCCAGTCT
1 CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCG-AGTTCAT-TCCAGTCT
18512724 AAGC
64 AAGC
18512728 ATACGGAGTG
Statistics
Matches: 308, Mismatches: 67, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 100 0.32
158 94 0.31
159 4 0.01
163 2 0.01
164 1 0.00
170 12 0.04
171 89 0.29
172 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCAGTCTAA
GCCCAGACAGACAGAGGGTTGTGGCAGCGGGACCGACAGCACGAAAGGGGGACGAGTCGATCCCC
GACTTGAGCATTATGCCTCTCCGGT
Found at i:18512515 original size:157 final size:156
Alignment explanation
Indices: 18512057--18512555 Score: 527
Period size: 157 Copynumber: 3.2 Consensus size: 156
18512047 CACAATCTAA
*
18512057 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGTAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGTAGGATCGATA
* * * ** * **
18512122 GCACGCAAGGGGGATTGGGCCGATCCCCGGCTT-ATG-ATTCCACCTGTCCGACCGACTGAGCAC
65 GCACGAAAGGGGGA-TCGGTCGATCCCCGGCTTGA-GCATTCTGCCTCTCCGGTCGACTGAGCAC
* * *
18512185 CCGTACGCCCATTTTGTGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * ** * *
18512214 GCATAGGGAGTTCATTCCATGTCTAAGCCCAGTC-AGACCGAGGGTTGTGGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCAGACTAGACCGAGGGTTGCGACAGTAGGATCGATA
* * * * * *
18512278 GCACGAAAAGGGAGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTCAGCGC
65 GCACG-AAAGGGGGATCG-GTCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGTCGACTGAGCAC
*
18512343 CCGCACGCTCATTTCGTGGGTTGACTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
18512372 GCATACCGAGTTCATTCCAGTATAAGATCAGACTGGACTGAGGGTTGCAACAGTAGGATCGGTAG
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGTAGGATCGATAG
* * * * *
18512437 CACGTAGGGGGGACCAGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCTCCC
66 CACGAAAGGGGGATC-GGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGTCGACTGAGCACCC
*
18512502 GCACGCTCGTTTCGTGGGTTGGCTTAG
130 GCACGCTCATTTCGTGGGTTGGCTTAG
*
18512529 GTATACGGAGTTCATTCCACGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
18512556 CCCCAGCCAA
Statistics
Matches: 274, Mismatches: 60, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
156 34 0.12
157 147 0.54
158 93 0.34
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGTAGGATCGATAG
CACGAAAGGGGGATCGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGTCGACTGAGCACCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:18512688 original size:328 final size:315
Alignment explanation
Indices: 18512057--18512726 Score: 763
Period size: 328 Copynumber: 2.1 Consensus size: 315
18512047 CACAATCTAA
* * *
18512057 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGTAGGATCGATA
1 GCATACCGAGTTCATTCCCAGTATAAGATCAGACTAGACCGAGGGTTGCAACAGTAGGATCGATA
*** *
18512122 GCACGCAAGGGGGATTGGGCCGATCCCCGGCTTATGATTCCACCTGTCCGACCGACTGAGCACCC
66 GCACGCAAGGGGGACCAGGCCGATCCCCGGCTTATGATTCCACCTCTCCGACCGACTGAGCACCC
* * * * * *
18512187 GTACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCAGAC
131 GCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCAGCCAAAC
** * *
18512252 CGAGGGTTGTGGCAGCGGGACCGACAGCACGAAAAGGGAGATCGAGTCGATCCCCGACTTGCGCA
196 AAAGGGTTGTGGCAGCGGGACCGACAGCACGAAAAGGGAGACCGAGTCGATCCCCGACTTGAGCA
* *
18512317 TTATGCCTCTCCGGTCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
261 TCATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
18512372 GCATACCGAGTTCATT-CCAGTATAAGATCAGACTGGACTGAGGGTTGCAACAGTAGGATCGGTA
1 GCATACCGAGTTCATTCCCAGTATAAGATCAGACTAGACCGAGGGTTGCAACAGTAGGATCGATA
* * * ** ** * *
18512436 GCACGTAGGGGGGACCAGGTCGATCCCCGGCTTGA-GCATTCTGCCTCTCCGGTCGGCTGAGCTC
66 GCACGCAAGGGGGACCAGGCCGATCCCCGGCTT-ATG-ATTCCACCTCTCCGACCGACTGAGCAC
* * *
18512500 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCACGTCTAAGCCCCAGCCA
129 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG-CCCAGCCA
* * * *
18512565 AACAAAGGGTTGTGGCAGCAGGATCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCG-GGCTG
193 AACAAAGGGTTGTGGCAGC--G---GG-A-C-----CGACAGCACGAAAAGGGAGACCGAGTC-G
* * * *
18512629 ATCCCCGACTTGAGCATCATGCCTCTCCGATCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTG
245 ATCCCCGACTTGAGCATCATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTG
18512694 ACTTAG
310 ACTTAG
* *
18512700 GCATA-CGAAGTTCATCCCCAGTCTAAG
1 GCATACCG-AGTTCATTCCCAGTATAAG
18512727 CATACGGAGT
Statistics
Matches: 293, Mismatches: 44, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
314 71 0.24
315 85 0.29
316 23 0.08
318 1 0.00
321 2 0.01
322 1 0.00
323 1 0.00
327 4 0.01
328 96 0.33
329 9 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (315 bp):
GCATACCGAGTTCATTCCCAGTATAAGATCAGACTAGACCGAGGGTTGCAACAGTAGGATCGATA
GCACGCAAGGGGGACCAGGCCGATCCCCGGCTTATGATTCCACCTCTCCGACCGACTGAGCACCC
GCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCAGCCAAAC
AAAGGGTTGTGGCAGCGGGACCGACAGCACGAAAAGGGAGACCGAGTCGATCCCCGACTTGAGCA
TCATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:18512745 original size:26 final size:26
Alignment explanation
Indices: 18512700--18512752 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18512690 GTTGACTTAG
*
18512700 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
* *
18512726 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
18512752 G
1 G
18512753 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTGCATCCCCAGTCTAA
Found at i:18513248 original size:672 final size:663
Alignment explanation
Indices: 18511958--18513882 Score: 2400
Period size: 672 Copynumber: 2.9 Consensus size: 663
18511948 ACCACCCGTT
* * * * **
18511958 TGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCTGCACGCTCATTTTACGGGT
1 TGATCCCCGGCTTGAGCATCATGCCTCTCCGATCGGCTGAGCGCC-GCACGCTCATTTTGTGGGT
* * * * *
18512023 TCACTTAGGCATTCGGAGTTCATCCACAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
** ** *
18512088 GACTAGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCAAGGGGGATTGGGCCGATCCCCGGC
130 GACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCAAGGGGGACCGAGCCGAT-CCCGGC
* * * * * * * *
18512153 TTATGATTCCACCTGTCCGACCGACTGAGCACCCGTACGCCCATTTTGTGGGTTGGCTTAGGCAT
194 TTACGATTCTACCTGTTCGGCTGATTGAGCACCCGTACGACCATTTCGTGGGTTGGCTTAGGCAT
18512218 AGGGAGTTCATTCCATGTCTAAG-CCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCAC
259 AGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCAC
* *
18512282 GAAAAGGGAGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTCAGCGCCCGC
324 GAAAAGGG-GATCGGGTCGATCCCCG-CTTGCGCATTATGCCTCTCTGG-CG-CTCAG-GCCCGC
*
18512347 ACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATT-CCAGTATAAGATCAGACTGGACT
384 A-GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGACTGGACT
** * ** * *
18512411 GAGGGTTGCAACAGTAGGATCGGTAGCACGTAGGGGGGACCAGG-TCGATCCCCGGCTTGA-GCA
448 GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCT-GATCCCCGGCTT-ACGCA
*
18512474 TTCTGCCTCTCCGGTCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAG
511 TTCTGCCTCTCCGATCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAG
* * *
18512539 TTCATTCCACGTCTAAGCCCCAGCCAAACAAAGGGTTGTGGCAGCAGGATCGGTAGCAGGATCGA
576 TTCATTCCATGTCTAAGCCCCAGCCAAACAAAGGGTTGTGGCAGCAGGATCGATAGCAAGATCGA
18512604 CAGCACGCAGAGGGGGACCGGGC
641 CAGCACGCAGAGGGGGACCGGGC
* * *
18512627 TGATCCCCGACTTGAGCATCATGCCTCTCCGATCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGT
1 TGATCCCCGGCTTGAGCATCATGCCTCTCCGATCGGCTGAGCGC-CGCACGCTCATTTTGTGGGT
* *
18512692 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATC-
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * *
18512756 GAACCGGACCGAGGGTTACCATAATAGGATCGACAACATGCAAGGGGGACCGAGCCGATCCCTGG
130 G-ACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCAAGGGGGACCGAGCCGATCCC-GG
* ** *
18512821 CTTACGCATTCTACCTGTTCGGCTGGTTGAGTGCCCGTACGTCCATTTCGTGGGTTGGCTTAGGC
193 CTTACG-ATTCTACCTGTTCGGCTGATTGAGCACCCGTACGACCATTTCGTGGGTTGGCTTAGGC
*
18512886 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGGCAGCGGGACCGACAGC
257 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAGC
18512951 ACGAAAAGAGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCTGGCCAGCTCAGTGCCC
322 ACGAAAAG-GGGATCGGGTCGATCCCC-GCTTGCGCATTATGCCTCTCTGG-C-GCTCAG-GCCC
* *
18513016 GCAAGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAAACTGGA
382 GC-AGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGACTGGA
* * * *
18513081 CTGAGCGTTGCGGTAGCAGCATCGACAGCACATAGGGGGGATCGGGCTGATCCCCGGCTTACGCA
446 CTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCGGCTTACGCA
* * * *
18513146 TTCTGCCTCTCCGATCGGCTGAGTTCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAG
511 TTCTGCCTCTCCGATCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAG
* * ** ** *
18513211 TTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCAGGATCGATAGCAAGATCGA
576 TTCATTCCATGTCTAAGCCCCAGCCAAACAAAGGGTTGTGGCAGCAGGATCGATAGCAAGATCGA
*
18513276 TAGCACGCAGAGGGGGACCGGGC
641 CAGCACGCAGAGGGGGACCGGGC
* * * * *
18513299 TGATCCCCGGCTTGAGCATCATGCCTTTTCGACCGGCTAAGCGCCCGCACGTTCATTTTGTGGGT
1 TGATCCCCGGCTTGAGCATCATGCCTCTCCGATCGGCTGAGCG-CCGCACGCTCATTTTGTGGGT
* *
18513364 TGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCA
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * **
18513429 GACCGGACCGAGGGTTGTGGCAGTTGGATCGGTAGCACGCAGGGGGGACC-AGGTCGATCCCAAC
130 GACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCAAGGGGGACCGA-GCCGATCCCGGC
* * * * * * * * *
18513493 TTGCGTATTTTGCCT-CTCCGATCGATGGAGCACCCGCAC-ACCTATTTCATGGGTTGGCTTAGG
194 TTACG-ATTCTACCTGTTCGGCT-GATTGAGCACCCGTACGACC-ATTTCGTGGGTTGGCTTAGG
* * * *
18513556 CATAGGGAATTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGACCTG-CA
256 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACC-GACA
* * * * *
18513620 GCACGTAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATG-C-CTCT-----TC-GG-CCG
320 GCACG-AAAAGGGGATCGGGTCGATCCC-CGCTTGCGCATTATGCCTCTCTGGCGCTCAGGCCCG
* * * *
18513676 --GCTCATTT-GTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT
383 CAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGACTGGACT
* *
18513738 GAGGGTTACGGCAGCAGGATCGACAGCACGTA-GGGGGATCGGGCTGATCCCCAGCTTACGCATT
448 GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCGGCTTACGCATT
* * * *
18513802 CTGCCTCTCTGATCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTT
513 CTGCCTCTCCGATCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTT
18513867 CATTCCATGTCTAAGC
578 CATTCCATGTCTAAGC
18513883 ATATGGAGGT
Statistics
Matches: 1091, Mismatches: 145, Indels: 55
0.85 0.11 0.04
Matches are distributed among these distances:
654 104 0.10
655 75 0.07
656 8 0.01
659 3 0.00
660 1 0.00
661 1 0.00
662 2 0.00
668 4 0.00
669 167 0.15
670 81 0.07
671 266 0.24
672 376 0.34
673 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (663 bp):
TGATCCCCGGCTTGAGCATCATGCCTCTCCGATCGGCTGAGCGCCGCACGCTCATTTTGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCAAGGGGGACCGAGCCGATCCCGGCTT
ACGATTCTACCTGTTCGGCTGATTGAGCACCCGTACGACCATTTCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGA
AAAGGGGATCGGGTCGATCCCCGCTTGCGCATTATGCCTCTCTGGCGCTCAGGCCCGCAGCTCAT
TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGACTGGACTGAGGGTTG
CGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCT
CCGATCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCAT
GTCTAAGCCCCAGCCAAACAAAGGGTTGTGGCAGCAGGATCGATAGCAAGATCGACAGCACGCAG
AGGGGGACCGGGC
Found at i:18513254 original size:158 final size:157
Alignment explanation
Indices: 18512811--18513268 Score: 456
Period size: 158 Copynumber: 2.9 Consensus size: 157
18512801 GGGACCGAGC
* * * * * * *
18512811 CGATCCCTGGCTTACGCATTCTACCTGTTCGGCTGGTTGAGTGCCCGTACG-TCCATTTCGTGGG
1 CGATCCCCGGCTTACGCATTCTGCCT-CTCCGCCGGCTGAGTGCCCGCACGCT-CATTTCGTGGG
* * * * *
18512875 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGGCAGCG
64 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGTCGGACCGAGGGTTGTGGTAGCA
*
18512940 GGACCGACAGCACGAAAAGAGGGATCGGGT
128 GGATCGACAGCACGAAAAGAGGGATCGGGT
* * * * * * * *
18512970 CGATCCCCAGCTTGCGCATTATGCCTCTCTGGCCAGCTCAGTGCCCGCAAGCTCATTTCATGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTC-CGCCGGCTGAGTGCCCGCACGCTCATTTCGTGGGT
* * * ** ** * * *
18513035 TGACTTAGGCATACAGAGTTCATTCCCA-GTATAAGATCAAACTGGACTGAGCGTTGCGGTAGCA
65 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGTC-GGACCGAGGGTTGTGGTAGCA
* * * *
18513099 GCATCGACAGCAC-ATAGGGGGGATCGGG-
128 GGATCGACAGCACGAAAAGAGGGATCGGGT
* * *
18513127 CTGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGTTCCCGCACGCTCATTTTGTGGG
1 C-GATCCCCGGCTTACGCATTCTGCCTCTCCG-CCGGCTGAGTGCCCGCACGCTCATTTCGTGGG
18513192 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCA
64 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGTCGGACCGAGGGTTGTGGTAGCA
*
18513257 GGATCGATAGCA
128 GGATCGACAGCA
18513269 AGATCGATAG
Statistics
Matches: 235, Mismatches: 56, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 125 0.53
159 101 0.43
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CGATCCCCGGCTTACGCATTCTGCCTCTCCGCCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGGTTGTGGTAGCAGGA
TCGACAGCACGAAAAGAGGGATCGGGT
Found at i:18513409 original size:26 final size:26
Alignment explanation
Indices: 18513373--18513424 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18513363 TTGACTTAGA
*
18513373 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCACTCTAAG
*
18513399 CATACGGAGTTCATTCCCACTCTAAG
1 CATACGGAGTTCATCCCCACTCTAAG
18513425 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCACTCTAAG
Found at i:18514607 original size:26 final size:26
Alignment explanation
Indices: 18514577--18514629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18514567 GTTGACTTAG
18514577 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18514603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18514629 G
1 G
18514630 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18514822 original size:26 final size:26
Alignment explanation
Indices: 18514786--18514835 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18514776 GTTGACTTAG
18514786 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* * *
18514812 GCATATAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTAATCCCCAGTCT
18514836 GAGATCGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:18515305 original size:26 final size:26
Alignment explanation
Indices: 18515253--18515305 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18515243 GTTGGCTTAG
*
18515253 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
18515279 GCATACGGAGTTCATTCTCA-GTCTAA
1 GCATACGGAGTTCATTC-CATGTCTAA
18515305 G
1 G
18515306 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:18516011 original size:26 final size:26
Alignment explanation
Indices: 18515975--18516027 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18515965 GTTGGCTTAG
18515975 GCATATAGAGTTCA-TCCCTAGTCTAA
1 GCATATAGAGTTCATTCCC-AGTCTAA
*
18516001 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
18516027 G
1 G
18516028 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:18516466 original size:157 final size:154
Alignment explanation
Indices: 18516001--18516492 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 154
18515991 CCTAGTCTAA
* * *
18516001 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAA-GGTTGCGACAGTAGGATCGAC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACT-GAC-CAAGGGTTGCGATAGCAGGATCGAC
* * *
18516065 AGCACGCAAGGGGGATCGGGTCGATCCTGGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
64 AGTA-GCAA-GGGGATCGGGTCGATCCTGG-CTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
* * *
18516130 CCGCATGCCCATTTCTTGGGTTGGCTTAG
126 CCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * ** * *
18516159 GCATAGGGAGTTAATT-CCATGTCTAAGCCCGAGCCAGACTGAGGGTTGTGGTAGC-GAGA-CTG
1 GCATATGGAGTTCATTCCCA-GTCTAAGATCG-GACTGACCAAGGGTTGCGATAGCAG-GATC-G
* * * * * * * *
18516221 ACAGCACGTAGAGGGGGATCGGATCGATCCTCGACTAGCGCATTATGCCT-TTCTAGCCGGCTCA
62 ACAGTA-GCA-A-GGGGATCGGGTCGATCCT-GGCTTGCGCATTCTGCCTCTTCGA-CCGGCTGA
*
18516285 GCGCCCGCACGCTCATTTCATGGGTTGACTTAG
122 GCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
18516318 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACTGAACCAAGGGTTACGATAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTG-ACCAAGGGTTGCGATAGCAGGATCGACA
* * *
18516383 GTTAGCAAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGCGCCC
65 G-TAGCAAGGGGATCGGGTCGAT-CCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
*
18516448 GCACGCTCATTTCGTGGGTTGGCTTAG
128 GCACGCTCATTTCATGGGTTGGCTTAG
18516475 GCATATGGAGTTCATTCC
1 GCATATGGAGTTCATTCC
18516493 ATTTCTAAGC
Statistics
Matches: 268, Mismatches: 51, Indels: 31
0.77 0.15 0.09
Matches are distributed among these distances:
157 86 0.32
158 60 0.22
159 115 0.43
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGACCAAGGGTTGCGATAGCAGGATCGACAG
TAGCAAGGGGATCGGGTCGATCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCA
CGCTCATTTCATGGGTTGGCTTAG
Found at i:18516511 original size:26 final size:26
Alignment explanation
Indices: 18516475--18516527 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18516465 GTTGGCTTAG
*
18516475 GCATATGGAGTTCATTCCATTTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
*
18516501 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
18516527 G
1 G
18516528 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:18516873 original size:26 final size:26
Alignment explanation
Indices: 18516843--18516895 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18516833 GATGACTTAG
18516843 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18516869 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18516895 G
1 G
18516896 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18517101 original size:355 final size:355
Alignment explanation
Indices: 18516389--18517446 Score: 1134
Period size: 368 Copynumber: 2.9 Consensus size: 355
18516379 GACAGTTAGC
* * * * * * **
18516389 AAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGCGCCCGCACGC
1 AAGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATTGACTGAGCGCCCGCACGC
* * * *
18516454 TCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATTTCTAAGCATATGGAGTTCATTC
66 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTC
* * * *
18516518 CCTGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGTAGTACCAGCAGCAGGATCGACAGCACG
130 CCAGTCTAAGATCGGATCGGATCGAGGGTT---GT-G--GT---AGCA--A-GATCGATAGCA--
* * * * ** * *
18516583 TG-AGGGGGGATCAGGCCGAT-CCTCGACTTGCACATTCTACCTCTCTGACCGGTTGAGCACCTG
181 TGCAGGGGGGATCAGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
* * ** * *
18516646 CACGCTCATTTCGTGGGTTGGCCAAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
245 CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGAC
* * * *
18516711 CGAGGGTTGTGGCAGCAGGATCGATAGCAGGATCGGTAGCACGTAG
310 CGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGGCAGCACGCAG
* * * **
18516757 AGGGGGATCGGGCTGATCCCCGACTTGTGCATTATGCCTCTCCGATTGACTGAGTGCCCGTTCGC
1 AAGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATTGACTGAGCGCCCGCACGC
* * *
18516822 TCGTTTCATGGGATGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
66 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
* * *
18516887 CAGTCTAAGATCGGATCGGAACAAGGGTTGTGGTAGCAAGATCGGTAGCATGCAGGGGGGATCAG
131 CAGTCTAAGATCGGATCGGATCGAGGGTTGTGGTAGCAAGATCGATAGCATGCAGGGGGGATCAG
* *
18516952 GCCGATCCCTGGCTTGCGCATTCTGCTTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGC
196 GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGG
* * *
18517017 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGTAGC
261 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGC
* ** *
18517082 AGGACCGGCAGTGGGATCGGCAGCATGCAG
326 AGGACCGACAGCAGGATCGGCAGCACGCAG
* * * *
18517112 AAGGGGATCGAGTTTATCCCCGACTTGGGCATTATGCCTCTCCGATCAGCCTCTCTGACGGGCTG
1 AAGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG---A-----T-TGA----CTG
* *
18517177 AACGCCCGCACGCTCATTTCGTGGGTTGACTTAGCCATACGGAGTTCATCCCCAGTCTAAGCATA
53 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * ** * ** * *
18517242 CGGAGTTCATTCCCAGTCTAAGATCGAATTAGATCGAGGGTTGCGACAGCAGGATCGATAGCA-C
118 TGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGTAGCAAGATCGATAGCATG
* * * * * * *
18517306 CCGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCAC
183 CAGGGGGGATCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCAC
*
18517371 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGA
248 GCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGA
18517436 GGGTTGTGGCA
313 GGGTTGTGGCA
18517447 ACGGGACTGG
Statistics
Matches: 583, Mismatches: 91, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
354 2 0.00
355 181 0.31
356 12 0.02
357 1 0.00
358 1 0.00
359 4 0.01
362 2 0.00
363 1 0.00
364 4 0.01
365 2 0.00
367 128 0.22
368 242 0.42
369 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (355 bp):
AAGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATTGACTGAGCGCCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
CAGTCTAAGATCGGATCGGATCGAGGGTTGTGGTAGCAAGATCGATAGCATGCAGGGGGGATCAG
GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGC
AGGACCGACAGCAGGATCGGCAGCACGCAG
Found at i:18517248 original size:26 final size:26
Alignment explanation
Indices: 18517212--18517263 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18517202 TTGACTTAGC
18517212 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
18517238 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
18517264 ATCGAATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:18517537 original size:159 final size:160
Alignment explanation
Indices: 18517311--18517616 Score: 456
Period size: 159 Copynumber: 1.9 Consensus size: 160
18517301 AGCACCCGGA
* * *
18517311 GGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCG
1 GGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTAAGCACCCGCACGCCCG
* * * *
18517376 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-GCCCCAG-CAGGACCGAGGG
66 TTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAATACCCCAGTCA-GACCAAGGG
18517439 TTGTGGCAAC-GGGACTGGTAGCACGCAGAGG
130 TTGTGGCAACAGGG-CTGGTAGCACGCAGAGG
* * * * * *
18517470 GGGACCAGGCTGATCCTCGGCTTACGTATTCTGCCTCTCCTGCCTACTAAGCACCCGCACGCTCG
1 GGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTAAGCACCCGCACGCCCG
18517535 TTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAATACCCCAGTCAGACCAAGGGT
66 TTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAATACCCCAGTCAGACCAAGGGT
18517600 TGTGGCAACAGGGCTGG
131 TGTGGCAACAGGGCTGG
18517617 CAGTGGGATC
Statistics
Matches: 131, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
159 98 0.75
160 28 0.21
161 5 0.04
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.22
Consensus pattern (160 bp):
GGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTAAGCACCCGCACGCCCG
TTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAATACCCCAGTCAGACCAAGGGT
TGTGGCAACAGGGCTGGTAGCACGCAGAGG
Found at i:18517768 original size:26 final size:26
Alignment explanation
Indices: 18517738--18517790 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18517728 GTTGACTTAG
*
18517738 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* * *
18517764 GCATACGGACTTTATTCCCAGTGTAA
1 GCATACGGACTTCATCCCCAGTCTAA
18517790 G
1 G
18517791 ATCGACCCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:18518233 original size:26 final size:26
Alignment explanation
Indices: 18518197--18518249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18518187 GTTGGCTCAG
*
18518197 GCATGCAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18518223 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18518249 G
1 G
18518250 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18518435 original size:26 final size:26
Alignment explanation
Indices: 18518405--18518457 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18518395 GTTGACTTAG
18518405 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18518431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18518457 G
1 G
18518458 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18518745 original size:26 final size:26
Alignment explanation
Indices: 18518696--18518746 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18518686 TTGGCTTAGG
*
18518696 CATACGGAGTTCATTCCATGTCTAAT
1 CATACGGAGTTCATTCCATATCTAAT
18518722 CATACGGAGTTCATTCCCA-ATCTAA
1 CATACGGAGTTCATT-CCATATCTAA
18518747 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAT
Found at i:18523157 original size:26 final size:26
Alignment explanation
Indices: 18523108--18523160 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18523098 GTTGGCTTAG
*
18523108 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
18523134 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
18523160 G
1 G
18523161 ATTGGATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:18523263 original size:184 final size:185
Alignment explanation
Indices: 18522949--18523316 Score: 515
Period size: 184 Copynumber: 2.0 Consensus size: 185
18522939 GTTGACTTAG
* * * *
18522949 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCAGGATCGACA
* * *
18523014 GCACGCAGGGGGGGACCAGGCCGATCCTCAGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCGC
66 GCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCACATTCTGCCTCTACGATCGGCTGAGCGC
* * *
18523079 CCGTATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAA
131 CCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** * *
18523134 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGAACCGAGGGTTGCGGTAGCAGGATCGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCAGGATCGACA
* * *
18523199 GCACGTA-AGGGGGACCGGGCCGATCCCC-GACTTGCACATTTTGCCTCTACGATCGGCTGAGCG
66 GCACGCAGAGGGGGACCAGGCCGATCCCCAG-CTTGCACATTCTGCCTCTACGATCGGCTGAGCG
* ** *
18523262 CCTGAACGCTTGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
130 CCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
18523317 CGCCCCAGCC
Statistics
Matches: 160, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
183 1 0.01
184 97 0.61
185 62 0.39
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (185 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCACATTCTGCCTCTACGATCGGCTGAGCGC
CCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:18523512 original size:26 final size:26
Alignment explanation
Indices: 18523476--18523528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18523466 GATGACTTAG
*
18523476 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18523502 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18523528 G
1 G
18523529 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18523865 original size:159 final size:158
Alignment explanation
Indices: 18523502--18523993 Score: 499
Period size: 159 Copynumber: 3.1 Consensus size: 158
18523492 CCCAGTCTAA
* * *
18523502 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGACCGAGGGTTGCGGCAGCAGGATCGACA
* ** * * * * *
18523567 ACAATCAGTGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCTGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
18523632 CGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGACTTAG
* ** *** ** * * *
18523660 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCAGACTAAGGGTTGTGGCAGCGGGA-CCA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGAATGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
18523722 GCAGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTGCACATTATGCCTCTTCGATCGGTTCAA
64 -CAGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* * *
18523787 CACCCGCACACTCGTTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
18523819 GCATACGGAGTTCATTCCCAATCTAAGATCAGAATGGACCGAGGGTTGCGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
18523884 GCACGTAGGGGGAGACCAGGCCGATCC-CTGGCTTCCGCATTCTGCCTCTCCGACCGGCTGAGCG
66 GCACGCAGGGGG-GACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* *
18523948 CCCGCACGCTCGTTTCATTGGTT-AGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGA-CTTAG
18523978 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
18523994 TCATGTCTAA
Statistics
Matches: 261, Mismatches: 63, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 55 0.21
159 196 0.75
160 5 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:18524027 original size:26 final size:26
Alignment explanation
Indices: 18523978--18524030 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18523968 GTTAGCTTAG
* *
18523978 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
18524004 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
18524030 G
1 G
18524031 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:18524733 original size:26 final size:26
Alignment explanation
Indices: 18524697--18524749 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18524687 GTTAACCTAG
*
18524697 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
18524723 GCATATGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
18524749 G
1 G
18524750 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:18525018 original size:159 final size:157
Alignment explanation
Indices: 18524797--18525265 Score: 491
Period size: 159 Copynumber: 3.0 Consensus size: 157
18524787 AGCACACAGG
* * * * * * *
18524797 GGGGACCGGGCTGATCATCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCACACGC-C
1 GGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTC
* * *
18524861 TATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGG
66 -ATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGG
* * *
18524926 TTGTGGTAG-TGAGACCGGCAGCACGCAGA
130 TTATGGTAGCAG-GACCGGCAGCAAGCA-A
* * *
18524955 GTGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCTGGTCGGCTCAGTGCCCGCACGCT
1 G-GGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCT
* * * * ** * *
18525020 CATTTTGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA-GCCTAAG-ATCAGACCAGACCAAG
65 CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAG
* * *
18525083 GGTTATAGTAGCAGGATCGACAGCAAGCAA
128 GGTTATGGTAGCAGGACCGGCAGCAAGCAA
* * * * * *
18525113 GGCCAGATCGGGCCTATCC-CTGACTTGTGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACG
1 GG--GGATCGGGCCGATCCTC-GGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACG
* *
18525177 CTCGTTTCGTGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTC-GAACCGA
63 CTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAG-ACCGA
18525241 GGGTTATGGTAGCAGGACCGGCAGC
127 GGGTTATGGTAGCAGGACCGGCAGC
18525266 GGGATCGGTA
Statistics
Matches: 251, Mismatches: 49, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 11 0.04
159 231 0.92
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTC
ATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
TATGGTAGCAGGACCGGCAGCAAGCAA
Found at i:18525762 original size:26 final size:26
Alignment explanation
Indices: 18525726--18525776 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18525716 TTGGCTTAGG
18525726 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
*
18525752 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
18525777 GATCAGACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:18526819 original size:26 final size:26
Alignment explanation
Indices: 18526771--18526821 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18526761 TTGGCTTAGG
*
18526771 CATACGGAGTTCATTCCATGTCTAAA
1 CATACGGAGTTCATCCCATGTCTAAA
*
18526797 CATATGGAGTTCATCCCCA-GTCTAA
1 CATACGGAGTTCAT-CCCATGTCTAA
18526822 GATCAGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCATGTCTAAA
Found at i:18527474 original size:13 final size:13
Alignment explanation
Indices: 18527440--18527479 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
18527430 GCACATTCTA
**
18527440 CCTCTTCGACCGG
1 CCTCTTCGGTCGG
18527453 CCTCTTCGGTCGG
1 CCTCTTCGGTCGG
18527466 CCTCTTCGGTCGG
1 CCTCTTCGGTCGG
18527479 C
1 C
18527480 TGAGCACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.03, C:0.42, G:0.28, T:0.28
Consensus pattern (13 bp):
CCTCTTCGGTCGG
Found at i:18527908 original size:26 final size:26
Alignment explanation
Indices: 18527879--18527931 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18527869 GTTGACTTAG
*
18527879 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
* *
18527905 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
18527931 G
1 G
18527932 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:18528604 original size:26 final size:26
Alignment explanation
Indices: 18528574--18528626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18528564 GTTGACTTAG
*
18528574 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
18528600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
18528626 G
1 G
18528627 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:18529940 original size:159 final size:156
Alignment explanation
Indices: 18529638--18530073 Score: 401
Period size: 159 Copynumber: 2.8 Consensus size: 156
18529628 CTCAGTCTAA
* * * * * *
18529638 GCATACGGAGTTCATTCCCAGTTTAAGATC-AGACCAGACCGAGGGTTGCGGCAGCACGATCGAC
1 GCATACAGAGTTCAGTACCAGTCTAAGACCGA-ACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * *
18529702 AGCACGCAGGGGGGACCAGGTCGATCCCCAACTTGCACATTCTGCCTCTTCAGTCGTTTGAGCGC
65 AGCACGTAGGGGGGATCAGGTCGAT-CCCAACTTGCGCATTCTGCCTC-TCCGACCTCTCAGCGC
* **
18529767 CCGCACGCCTGTTTCGTGGGTTGGCTTAG
128 CCGCACGCCTGTTTCATGGGTTGAATTAG
** * * * ** * **
18529796 GCATAGGGAGTTTAGT-CCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAGTGGGATCGAC
1 GCATACAGAGTTCAGTACCA-GTCTAAGACCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * *
18529860 AGCACGTAGAGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGACCTACTCAGCG
65 AGCACGTAG-GGGGGATCAGGTCGATCC-CAACTTGCGCATTCTGCCTCTCCGACCT-CTCAGCG
* *
18529925 CCCGTACG-ATCGTTTCATGGGTTGAATTAG
127 CCCGCACGCCT-GTTTCATGGGTTGAATTAG
* * * * *
18529955 GCATACAGAGTTCATTACCAGTCTAAGATCGAACCAGATCGAGGGTTACAGCAGCAGGATCGACA
1 GCATACAGAGTTCAGTACCAGTCTAAGACCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
18530020 GCACATAGGGGGGATCAGGCCGGTCCCTAGCTTGCGCATTCTGCCTCTCCGACC
66 GCACGTAGGGGGGATCAGGTCGATCCC-AACTTGCGCATTCTGCCTCTCCGACC
18530074 GATTGAGCAC
Statistics
Matches: 220, Mismatches: 50, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 100 0.45
159 113 0.51
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACAGAGTTCAGTACCAGTCTAAGACCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGATCAGGTCGATCCCAACTTGCGCATTCTGCCTCTCCGACCTCTCAGCGCCCG
CACGCCTGTTTCATGGGTTGAATTAG
Found at i:18530448 original size:170 final size:161
Alignment explanation
Indices: 18530196--18530972 Score: 494
Period size: 158 Copynumber: 4.8 Consensus size: 161
18530186 GGTTACGGCG
* ** * ** * * *
18530196 GCAGGATCGACAGGACATAGGGGGGACCGAACTGATCCCCGACTTACGCATTCTGCCTCTTCGAC
1 GCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCCGAC
*
18530261 TGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 -GGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
18530326 AGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGACA
130 AGCCCCAGCT-GGACCGAGGGTTGT----G--GG--CGACA
* * * *
18530366 GCGGGATCGACAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTCCGA
1 GCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCCGA
* * * * * *
18530431 TCGGCTGAGTG-CCGTACGCTTATTTCGTAGGTTGACTTAGGCATACAGAGTTCATCCCCA-ATC
65 -CGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC
** *
18530494 TAAG-ATCAGACTGGACTGAGGG-T-T--GCGACA
128 TAAGCCCCAG-CTGGACCGAGGGTTGTGGGCGACA
* * ** *
18530524 GCAGGATCGGCAGCACGCAGGGGGGATCGGGCCAATCCTTGACTTGTGCATTCTGCCTCTCCGAC
1 GCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCCGA-
* * * * * * *
18530589 CGGCTGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTA
65 CGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
18530654 AGCCCCAGCTGGATCGAGGGTTGT-GG-TA-A
130 AGCCCCAGCTGGACCGAGGGTTGTGGGCGACA
* * * * * * *** * * *
18530683 -CGGGA-CCAGCAGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGCACATTATGCCTTTTCG
1 GCAGGATCGA-CAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCC-TCTCC
* * ** * * * **
18530746 GCCGGCTCAGTGCCCACACGCTCGTTTCGTGGGTTGACTTATGCATACAAAGTTCATTCC-TAGT
63 GACGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GT
** * * * *
18530810 CTAAGATCAAACCGGACCGA-GGTT-T--GCGATA
127 CTAAGCCCCAGCTGGACCGAGGGTTGTGGGCGACA
* * * * * * *** * *
18530841 GCAGGATCGATAGCACGCAAGGGGCACCGGGTCGATCCCTGACTTGCACATTCTGCCTCTTCGGT
1 GCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTC-TCCGA
* ** ** * *
18530906 CGACTGAGCACCCACACGCTCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCT
65 CGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
18530970 AAG
129 AAG
18530973 ATTTTGAGCA
Statistics
Matches: 483, Mismatches: 102, Indels: 56
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 55 0.11
158 180 0.37
159 111 0.23
160 9 0.02
161 1 0.00
168 1 0.00
169 4 0.01
170 72 0.15
171 48 0.10
172 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (161 bp):
GCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCCGAC
GGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGCTGGACCGAGGGTTGTGGGCGACA
Found at i:18530640 original size:158 final size:159
Alignment explanation
Indices: 18530361--18530974 Score: 524
Period size: 158 Copynumber: 3.9 Consensus size: 159
18530351 GCAGCAGGAC
* * * * * ***
18530361 CGACAGCGGGATCGACAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTC
1 CGACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCACATTATGCCTC
* ** *** * * *
18530426 TCCGATCGGCTGAGTG-CCGTACGCTTATTTCGTAGGTTGACTTAGGCATACAGAGTTCATCCCC
66 TCCGACCGGCTGAGTGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
*
18530490 AATCTAAGATCAGACTGGACTGAGGGTTG
131 AGTCTAAGATCAGACTGGACTGAGGGTTG
* * * * ** *
18530519 CGACAGCAGGATCGGCAGCACGCAG-GGGGGATCGGGCCAATCCTTGACTTGTGCATTCTGCCTC
1 CGACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCACATTATGCCTC
* * * ** *
18530583 TCCGACCGGCTGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATT-CC
66 TCCGACCGGCTGAGTGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
**
18530647 ATGTCTAAGCCCCAG-CTGGA-TCGAGGGTTG
131 A-GTCTAAG-ATCAGACTGGACT-GAGGGTTG
* ** * * * * *
18530677 TGGTAACGGGA-CCAGCAGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGCACATTATGCCT
1 CGACAGCAGGATCGA-CAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCACATTATGCCT
* * * * * * * *
18530741 TTTCGGCCGGCTCAGTGCCCACACGCTCGTTTCGTGGGTTGACTTATGCATACAAAGTTCATTCC
65 CTCCGACCGGCTGAGTGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
* * * * *
18530806 TAGTCTAAGATCAAACCGGACCGAGGTTTG
130 CAGTCTAAGATCAGACTGGACTGAGGGTTG
* * * * *
18530836 CGATAGCAGGATCGATAGCACGCA-AGGGGCACCGGGTCGATCCCTGACTTGCACATTCTGCCTC
1 CGACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCACATTATGCCTC
* ** * ** * *
18530900 TTCGGTCGACTGAGCACCCACACGCTCC-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
66 TCCGACCGGCTGAGTGCCCACACGC-CCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
18530964 CAGTCTAAGAT
130 CAGTCTAAGAT
18530975 TTTGAGCAAC
Statistics
Matches: 360, Mismatches: 85, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
157 53 0.15
158 187 0.52
159 116 0.32
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
CGACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCACATTATGCCTC
TCCGACCGGCTGAGTGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
AGTCTAAGATCAGACTGGACTGAGGGTTG
Found at i:18530899 original size:317 final size:321
Alignment explanation
Indices: 18530144--18530972 Score: 893
Period size: 317 Copynumber: 2.6 Consensus size: 321
18530134 CATATCAAAC
* * * *
18530144 CATACAAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCGGCAGGATCGACAG
1 CATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAG
* ** * * * *
18530209 GACATAGGGGGGACC-GAACTGATCCCCGACTTACGCATTCTGCCTCTTCGACTGGCTGAGCGCC
66 CACGCAGGGGGGACCGGGAC-GATCCCTGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
* * *
18530273 CGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
130 CGCACGC-CCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * * *
18530338 ACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGTAGAGGGGGATCGGGCCGAT
194 ACCGAGGGTTGTGGCAACAGG--CGACA-C--GA-CGACAGCACGCAGAGGGGGACCGAGCCGAT
** * * ** *
18530403 CCCCGGCTTATGCATTATGCCTCTCCGATCGGCTGAGTGCCGTACGCTTATTTCGTAGGTTGACT
253 CCCCGGCTTACACATTATGCCTCTCCGACCGGCTCAGTGCCACACGCTCATTTCGTAGGTTGACT
18530468 TAGG
318 TAGG
* * * * *
18530472 CATACAGAGTTCATCCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGGCAG
1 CATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAG
* * * * * * *
18530537 CACGCAGGGGGGATCGGGCCAATCCTTGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
66 CACGCAGGGGGGACCGGGACGATCCCTGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
* * *
18530602 GCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAG-CTGG
131 GCACGCCC-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC-GG
* * *
18530666 ATCGAGGGTTGTGGTAAC-GG-GAC-C-A-G-CAGCACGCAGAGGGGGACCGAGCCGATCCCTGG
194 ACCGAGGGTTGTGGCAACAGGCGACACGACGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGG
* * * * * * *
18530725 CTTGCACATTATGCCTTTTCGGCCGGCTCAGTGCCCACACGCTCGTTTCGTGGGTTGACTTATG
259 CTTACACATTATGCCTCTCCGACCGGCTCAGTG-CCACACGCTCATTTCGTAGGTTGACTTAGG
* * * * * *
18530789 CATACAAAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGTTTGCGATAGCAGGATCGATAG
1 CATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAG
* * * * ** * *
18530854 CACGCAAGGGGCACCGGGTCGATCCCTGACTTGCACATTCTGCCTCTTCGGTCGACTGAGCACCC
66 CACGCAGGGGGGACCGGGACGATCCCTGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
*
18530919 ACACGCTCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
131 GCACGC-CCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
18530973 ATTTTGAGCA
Statistics
Matches: 416, Mismatches: 79, Indels: 23
0.80 0.15 0.04
Matches are distributed among these distances:
316 54 0.13
317 173 0.42
318 5 0.01
319 1 0.00
322 1 0.00
324 3 0.01
327 4 0.01
328 173 0.42
329 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (321 bp):
CATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGGGGGGACCGGGACGATCCCTGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
GCACGCCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
CGAGGGTTGTGGCAACAGGCGACACGACGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCT
TACACATTATGCCTCTCCGACCGGCTCAGTGCCACACGCTCATTTCGTAGGTTGACTTAGG
Found at i:18531668 original size:26 final size:26
Alignment explanation
Indices: 18531638--18531693 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
18531628 TGGGTCGACT
* * *
18531638 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTCCATCCCCAATC
* *
18531664 TAAGCGTACGAAGTCCATTCCCAATC
1 TAAGCATACGAAGTCCATCCCCAATC
18531690 TAAG
1 TAAG
18531694 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACGAAGTCCATCCCCAATC
Found at i:18533071 original size:26 final size:26
Alignment explanation
Indices: 18533036--18533088 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18533026 GTTGGCTTAG
*
18533036 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18533062 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18533088 G
1 G
18533089 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18533262 original size:26 final size:26
Alignment explanation
Indices: 18533233--18533283 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18533223 TGACTTCGAA
18533233 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
18533259 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
18533284 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:18533730 original size:157 final size:157
Alignment explanation
Indices: 18533257--18533789 Score: 479
Period size: 157 Copynumber: 3.4 Consensus size: 157
18533247 CCCAGTCTAA
* * ** * *
18533257 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACC-AGACCAAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCA-TCCCATGTCTAAGATCGGACCGA-ACTGAGGGTTGTGGCAGCAGGATCGA
* * *
18533320 CAGCATGCAGGGGGGA-CTGGG-TCGATCCCCGGCTTGTGCATTCTGCTTCTCCGGCTGACTGAG
64 CAGCATGCAGGGGGGATC-GGGCT-GAT-CCCGGCTTGTGCATTCTGCCTCTTCGACTGACTGAG
* *
18533383 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * ** * ** *
18533415 GCATAGGGAGTTTATTCCATGACTAA-ACCCTAGTCGAACTGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATCCCATGTCTAAGATCGGA-CCGAACTGAGGGTTGTGGCAGCAGGATCGAC
* ** * * * * * * * *
18533479 AGCACGCAGAGGGGGATCGAACCGGTCCCTGGCTTGCGCATTATGCCT-TTCCAGTCGACTCAGT
65 AGCATGCAG-GGGGGATCGGGCTGATCCC-GGCTTGTGCATTCTGCCTCTTCGACT-GACTGAGC
*
18533543 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
18533574 GCATACGGAGTTCATCCC-TAGTCTAAGATCGGACCGAACTGAGGGTTGTGG-GGCAGGATCGAC
1 GCATACGGAGTTCATCCCAT-GTCTAAGATCGGACCGAACTGAGGGTTGTGGCAGCAGGATCGAC
* * * *
18533637 AGTATGCAGGGGGGATCGGGCTGATCCTCGGCTTGTGCATTCTACCTCTTCGACTGGCTGAGCAC
65 AGCATGCAGGGGGGATCGGGCTGATCC-CGGCTTGTGCATTCTGCCTCTTCGACTGACTGAGCGC
* * **
18533702 TCGCACGCTCGTTTCATGGGTTTCCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
18533731 GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAACAGGA
1 GCATACGGAGTTCATCCCATGTCTAAGATCGGACCGAACTGAGGGTTGTGGCAGCAGGA
18533790 CCAGCAGTAG
Statistics
Matches: 290, Mismatches: 71, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
157 111 0.38
158 79 0.27
159 96 0.33
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATCCCATGTCTAAGATCGGACCGAACTGAGGGTTGTGGCAGCAGGATCGACA
GCATGCAGGGGGGATCGGGCTGATCCCGGCTTGTGCATTCTGCCTCTTCGACTGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:18534393 original size:158 final size:159
Alignment explanation
Indices: 18534115--18534413 Score: 363
Period size: 158 Copynumber: 1.9 Consensus size: 159
18534105 CTAAGCCCCA
** *
18534115 ACCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACTGGGCCGATCCTCAGC
1 ACCGGACCGAGGGTTGTGAAAGCAGGACCGGTAGCACGCAGAGGGGGACTGGGCCGATCCTCAGC
* ** * * *
18534180 TTGCACATTATGCCTCTTCGATTTGCTCAGTGCCCGTACATGTGTTTCATGGGTTGACTTATGCA
66 TTGCACATTATGCCTCTCCGATCCGCTCAGCGCCCGCACATGTGTTTCATGGGTTGACTTAGGCA
18534245 TACAGAGTTCAGTCGTAGTCTAAGATCCG
131 TACAGAGTTCAGTCGTAGTCTAAGATCCG
* * * *
18534274 ACCGGACTGAGGGTTGTGAAAGCAGGATCGGTAGCACGTAG-GGGGGA-TCGGGCCGATCCTCGG
1 ACCGGACCGAGGGTTGTGAAAGCAGGACCGGTAGCACGCAGAGGGGGACT-GGGCCGATCCTCAG
* * * * * *
18534337 CTTGCCCATTCTGCCTCTCCGA-CCGACTGAGCGCCTGCACACT-TGTTTCGTGGGTTGGCTTAG
65 CTTGCACATTATGCCTCTCCGATCCG-CTCAGCGCCCGCACA-TGTGTTTCATGGGTTGACTTAG
*
18534400 GCATACGGAGTTCA
128 GCATACAGAGTTCA
18534414 TTCCATGTTT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
157 2 0.02
158 79 0.68
159 36 0.31
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.24
Consensus pattern (159 bp):
ACCGGACCGAGGGTTGTGAAAGCAGGACCGGTAGCACGCAGAGGGGGACTGGGCCGATCCTCAGC
TTGCACATTATGCCTCTCCGATCCGCTCAGCGCCCGCACATGTGTTTCATGGGTTGACTTAGGCA
TACAGAGTTCAGTCGTAGTCTAAGATCCG
Found at i:18534408 original size:669 final size:669
Alignment explanation
Indices: 18533062--18534426 Score: 1576
Period size: 669 Copynumber: 2.0 Consensus size: 669
18533052 CCATGTCTAA
* * *
18533062 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGCAGTAGCAGGACCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACTGAGGGTTGCAGCAACAGGACCAAC
* *** * * * *
18533126 AAGGATCGACAGCACGCAGAGTGGGACTGGGCTGATCCTCGGCTTGCACTTTCTGCCTCTCTGAT
65 AAGGATCGACAGCACGCAGAGGGGGACCAAGCTCATCCCCGGCTTACACATTCTGCCTCTCTGAT
* *
18533191 CAGTTGAGCGCCCGTACACTCGTTTAATGGGTTGACTTCGAAATACAGAGTTCATCCCCAGTCTA
130 CAGTTGAGCACCCGTACACTCGTTTAATGGGTTGACTTAGAAATACAGAGTTCATCCCCAGTCTA
* *
18533256 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGAC
195 AGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGATAGCAGGATCGAC
* * * *
18533321 AGCATGCAGGGGGGACTGGGTCGATCCCCGGCTTGTGCATTCTGCTTCTCCGGCTGACTGAGCGC
260 AGCATGCAAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCAGACTGAGCGC
* * * * **
18533386 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGACTAAACCCTAGTCG
325 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGACTAAACCCCAACCG
* * * *
18533451 AACTGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCGAACCGGTCCCTGGCTTGC
390 AACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAACCGATCCCTAGCTTGC
* * *
18533516 GCATTATGCCTTTCCAGTCGACTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
455 ACATTATGCCTTTCCAGTCGACTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACA
* ** * *
18533581 GAGTTCATCCCTAGTCTAAGATCGGACCGAACTGAGGGTTGTGGGGCAGGATCGACAGTATGCAG
520 GAGTTCATCCCTAGTCTAAGATCCGACCGAACTGAGGGTTGTGAAGCAGGATCGACAGCACGCAG
* ** * * * *
18533646 GGGGGATCGGGCTGATCCTCGGCTTGTGCATTCTACCTCTTCGACTGGCTGAGCACTCGCACGCT
585 GGGGGATCGGGCCGATCCTCGGCTTGCCCATTCTACCTCTCCGACCGACTGAGCACTCGCACACT
*
18533711 CGTTTCATGGGTTTCCTTAG
650 CGTTTCATGGGTTGCCTTAG
* *
18533731 GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAACAGGACCAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACTGAGGGTTGCAGCAACAGGACCAACA
* *
18533796 GTAGGATC-AGCAGCATGCAG-GGGGGACCAAGCTCATCCCCGGCTTACGCATTCTGCCTCT-TC
66 --AGGATCGA-CAGCACGCAGAGGGGGACCAAGCTCATCCCCGGCTTACACATTCTGCCTCTCT-
* * * ** * ** * ** * *
18533858 GGTCGGTTGAGCACTCGTATGCTTGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCAT-TCCAGT
127 GATCAGTTGAGCACCCGTACACTCGTTTAATGGGTTGACTTAGAAATACAGAGTTCATCCCCAGT
* * * * * * *
18533922 CTAAGCGTACGGGGTTCATTCCCAGTCTAAGGTCAAACCGGATCGAGGGTTGCGATAGCAGGA-C
192 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGATAGCAGGATC
*
18533986 GAGCAGCATGCAAGGGGG-CCGGG-CTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCAG-CT
257 GA-CAGCATGCAAGGGGGACCGGGTC-GATCCCCGGCTTGTGCATTCTGCCTCTCCGG-CAGACT
* * * * * *
18534048 GAGC-CCCTGCACGCCTATTTTGTGGTTTGGCTTAGGCATAAGGTGTTCATTCCATGTCTAAGCC
319 GAGCGCCC-GCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGACTAAACC
* ** **
18534112 CCAACCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGA-CTGGGCCGAT-CC
383 CCAACCGAACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATC-GAACCGATCCC
* * * * *
18534175 TCAGCTTGCACATTATGCCTCTTCGATTTG-CTCAGTGCCCGTACATG-T-GTTTCATGGGTTGA
447 T-AGCTTGCACATTATGCCT-TTCCAGTCGACTCAGTGCCCG--CACGCTCATTTCATGGGTTGA
* * *
18534237 CTTATGCATACAGAGTTCAGT-CGTAGTCTAAGATCCGACCGGACTGAGGGTTGTGAAAGCAGGA
508 CTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGATCCGACCGAACTGAGGGTTGTG-AAGCAGGA
** * *
18534301 TCGGTAGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCCCATTCTGCCTCTCCGACCGACTG
571 TCGACAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCCCATTCTACCTCTCCGACCGACTG
* * * *
18534366 AGCGC-CTGCACACTTGTTTCGTGGGTTGGCTTAG
636 AGCACTC-GCACACTCGTTTCATGGGTTGCCTTAG
*
18534400 GCATACGGAGTTCATTCCATGTTTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18534427 CATACGGAGT
Statistics
Matches: 581, Mismatches: 98, Indels: 34
0.81 0.14 0.05
Matches are distributed among these distances:
667 8 0.01
668 228 0.39
669 251 0.43
670 79 0.14
671 15 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (669 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACTGAGGGTTGCAGCAACAGGACCAACA
AGGATCGACAGCACGCAGAGGGGGACCAAGCTCATCCCCGGCTTACACATTCTGCCTCTCTGATC
AGTTGAGCACCCGTACACTCGTTTAATGGGTTGACTTAGAAATACAGAGTTCATCCCCAGTCTAA
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGATAGCAGGATCGACA
GCATGCAAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCAGACTGAGCGCC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGACTAAACCCCAACCGA
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAACCGATCCCTAGCTTGCA
CATTATGCCTTTCCAGTCGACTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG
AGTTCATCCCTAGTCTAAGATCCGACCGAACTGAGGGTTGTGAAGCAGGATCGACAGCACGCAGG
GGGGATCGGGCCGATCCTCGGCTTGCCCATTCTACCTCTCCGACCGACTGAGCACTCGCACACTC
GTTTCATGGGTTGCCTTAG
Found at i:18535418 original size:159 final size:159
Alignment explanation
Indices: 18535141--18535614 Score: 476
Period size: 159 Copynumber: 3.0 Consensus size: 159
18535131 ATCTAAAATA
* ** * * * * ** * * *
18535141 AGACCAGACTGAGGGTTATGACAGTAGGATCGACAGCACGCAGAAG-GGACCAGGTCGATCCCTG
1 AGACCAGACCGAGGGTTGCGGCAGGAGGATCAACAGCACACAGGGGAGGACCGGGCCGATCCCCG
* * * * * *
18535205 GCTTGCGCATTCTGCCTCTCCGGTCGATTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGG
66 GCTTGAGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
**
18535270 CATGGGGAGTTCATTCCATGTCTAAGCTCC
131 CATACGGAGTTCATTCCATGTCTAAGCT-C
* * * *
18535300 A-ACCAGACCGAGGGTTGTGGCAGCGA-GA-CTGATAGCACACAGAGGG-GGATCGGGCCGATCC
1 AGACCAGACCGAGGGTTGCGGCAG-GAGGATC-AACAGCACACAG-GGGAGGACCGGGCCGATCC
* * * * * *
18535361 CCGGCTTGAGCATTATGCCTCTCTGGCCGGTTGAGCACCCGCACGCTCATTTTATGGGTTGACTT
63 CCGGCTTGAGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTT
*
18535426 AGGCATACGGAGTTCATTCCCA-GTCTAAGATC
128 AGGCATACGGAGTTCATT-CCATGTCTAAGCTC
* * ** * *
18535458 AGACCAGACCTAGGGTTGCGGCAGTAGGATCAACAGCACGTAGGGGAGGACCGGGTCGATCCCCA
1 AGACCAGACCGAGGGTTGCGGCAGGAGGATCAACAGCACACAGGGGAGGACCGGGCCGATCCCCG
** * *
18535523 GCTT-ATGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAG
66 GCTTGA-GCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
18535587 GCATACGGAGTTCATTCCATGTCTAAGC
130 GCATACGGAGTTCATTCCATGTCTAAGC
18535615 ATACGGAGTT
Statistics
Matches: 257, Mismatches: 48, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 41 0.16
159 211 0.82
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
AGACCAGACCGAGGGTTGCGGCAGGAGGATCAACAGCACACAGGGGAGGACCGGGCCGATCCCCG
GCTTGAGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCTC
Found at i:18535623 original size:26 final size:26
Alignment explanation
Indices: 18535587--18535639 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18535577 GTTGGCTTAG
18535587 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18535613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18535639 G
1 G
18535640 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18535772 original size:184 final size:183
Alignment explanation
Indices: 18535428--18536361 Score: 742
Period size: 184 Copynumber: 5.0 Consensus size: 183
18535418 GTTGACTTAG
* * * * *
18535428 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTAGGGTTACGACAGCAGGATCGACA
* * **
18535493 GCACGTAGGGGAGGACCGGG-TCGATCCCC-AGCTTATGCATTCTGCCTCTCCAACCGGTTGAGC
65 GCACGTAGGGG-GGATCGGGCT-GATCCCCGA-CTTATGCATTCTGCCTCTCCGACCGACTGAGC
* * *
18535556 GCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 GCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
18535613 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-AGGGTTACGACAGCAGGATCGACA
* ** * *
18535678 GCACGCAGGGGGGATCGGGCTGATCCTTGACTTGCT-CATTCTGCCTCTCCGATCGACTGAGCGC
65 GCACGTAGGGGGGATCGGGCTGATCCCCGACTT-ATGCATTCTGCCTCTCCGACCGACTGAGCGC
18535742 TCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 TCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** ** * ** * * * *
18535797 --A-CCCCAGCTGGA--CCGAGGGT-TG-T--G---GCAGTA-GG--ACCGACAGC-GAGATCGG
1 GCATACGGAG-TTCATTCCCAGTCTAAGATCAGACCGGACTAGGGTTA-CGACAGCAG-GATCGA
* * * *
18535846 TAGCACGTAGAGGGGGATCGAGCTGATCCCCGACTTACGCATTATGCCTCTCCGACCAGCCTCTC
63 CAGCACGTAG-GGGGGATCGGGCTGATCCCCGACTTATGCATTCTGCCTCTCCG---A------C
* * * *
18535911 CGGCCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATG
118 C-G--A-CTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
18535976 TCTAA
179 TCTAA
* * * * * * *
18535981 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAAGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTAGGGTTACGACAGCAGGATCGACA
* * * * * * * * *
18536046 GCATGTAAGGGGGACCGGGTTAATCCCTGACTTATGCATTTTGCCTCTCCGGCCGACTGAGCTCT
65 GCACGTAGGGGGGATCGGGCTGATCCCCGACTTATGCATTCTGCCTCTCCGACCGACTGAGCGCT
* *
18536111 CGCACGCTTATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
18536165 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGTAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-C-----TAG-GGT--TACGA-C---A
* * * * *
18536230 GCAGGATCGACAG-ACGCAGGGGGGATCGAGCCGATCCCCCACTTGTGCATTCTGCCTCTCCGAC
53 GCAGGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCGACTTATGCATTCTGCCTCTCCGAC
* * * * *
18536294 C-AGTTGAGCGATCGCATGC-CAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
118 CGA-CTGAGCGCTCGCACGCTCA-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
18536357 TAA
181 TAA
18536360 GC
1 GC
18536362 CCCAGCCAGA
Statistics
Matches: 588, Mismatches: 108, Indels: 96
0.74 0.14 0.12
Matches are distributed among these distances:
169 2 0.00
170 20 0.03
171 38 0.06
172 1 0.00
173 3 0.01
174 1 0.00
176 1 0.00
178 1 0.00
179 1 0.00
180 6 0.01
181 4 0.01
182 3 0.01
183 1 0.00
184 244 0.41
185 71 0.12
186 3 0.01
187 4 0.01
188 6 0.01
189 2 0.00
190 4 0.01
192 3 0.01
193 1 0.00
194 2 0.00
195 98 0.17
196 12 0.02
197 38 0.06
198 18 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAGGGTTACGACAGCAGGATCGACAG
CACGTAGGGGGGATCGGGCTGATCCCCGACTTATGCATTCTGCCTCTCCGACCGACTGAGCGCTC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:18535991 original size:26 final size:26
Alignment explanation
Indices: 18535955--18536007 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18535945 GTTGGCTTAG
*
18535955 GCATATGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
18535981 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
18536007 G
1 G
18536008 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:18536169 original size:26 final size:26
Alignment explanation
Indices: 18536139--18536191 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18536129 GTTGGCTTAG
18536139 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18536165 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18536191 G
1 G
18536192 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18537254 original size:159 final size:158
Alignment explanation
Indices: 18536871--18537350 Score: 466
Period size: 159 Copynumber: 3.0 Consensus size: 158
18536861 TCTAGTCTAA
* * * * * * * * *
18536871 GCATACGGAGTTCATTCCTATCTAAGATCAAAGCGAACAGAGGGCTCCGACAGCAAGATCGGCAG
1 GCATACGGAGTTCATTCCAATCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAA
* * * *
18536936 CACACAG-GGGTGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCAGCTGAACGCC
66 CACTCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAACGCC
* * *
18537000 CGCACACCCGTTTTGTGGGTTAGCTTAG
131 CGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * ** * * * * *
18537028 GCATAGGGAGTTCATTCCATGTCGAAGCCCCAGTCAG-GCCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCA-ATCTAAG-ATCAGACCGAACCGAGGGTTGCGGCAGCAGGATC-GG
** * * * * * * * * *
18537091 CAACACTCAGAGGGGGATTGGGCCAATCCTCAGCTTGCTCATTATGCCTCTTCGATCGGCTCAGC
63 CAACACTCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAAC
18537156 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* *
18537187 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAATCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
18537252 ACA-TGCA-AGGGGGACCGGGCCGATCCCCGGCTTGCGCAATCTACCTCTCCGGCCTGCTGAACG
65 ACACT-CAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAACG
* *
18537315 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
18537345 GCATAC
1 GCATAC
18537351 AGAATGCTTT
Statistics
Matches: 249, Mismatches: 66, Indels: 15
0.75 0.20 0.05
Matches are distributed among these distances:
157 18 0.07
158 110 0.44
159 117 0.47
160 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAATCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAA
CACTCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAACGCC
CGCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:18538292 original size:159 final size:158
Alignment explanation
Indices: 18538036--18538411 Score: 409
Period size: 158 Copynumber: 2.4 Consensus size: 158
18538026 CGACTGAGTG
* *
18538036 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
* ** * *
18538101 AGACCGAGGGTTGTGGCAGTGGGATCGGCAGCACGTAGAGGGGGATC-GAGTCACTCCCCGACTT
66 AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAG-GGGGGATCAG-GTCACTCCCCGACTT
*
18538165 GTGCATTATGCCTCTCAGGCCGGCTCAACG
129 GTGCATTATGCCTCTCAGGCCGGCTCAACA
* * * ** *
18538195 CCGGTACGCTCGTTTCATGAGTTGATTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG-
*** * * ** *
18538258 TTGGACCGAGGGTTGCGGTAGCAGGATTGACAGCACATAGGGGGGATCAGGTCGGTCCCTGACTT
64 CCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGATCAGGTCACTCCCCGACTT
* * * * * *
18538323 TTGCATTCTGCCTCTCCGGTCGGCTGAGCA
129 GTGCATTATGCCTCTCAGGCCGGCTCAACA
* *
18538353 CCCGCGCGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTT-ATTTCCATGTCTAAGCA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCA
18538412 TACAGAGTTT
Statistics
Matches: 176, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 93 0.53
159 82 0.47
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.26
Consensus pattern (158 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGATCAGGTCACTCCCCGACTTGT
GCATTATGCCTCTCAGGCCGGCTCAACA
Found at i:18538383 original size:158 final size:159
Alignment explanation
Indices: 18537996--18538411 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 159
18537986 ACCCGTTCGA
* * * * * *
18537996 TCCCTGACTTACGCATCCTGCCTCTCTGGTCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGG
1 TCCCTGACTTATGCATTCTGCCTCTCAGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* * **
18538061 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGAT
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGCGGCAGCAGGAT
* *
18538126 CGGCAGCACGTAGAGGGGGATCGAGTCAC
131 CGACAGCACATAGAGGGGGATCGAGTCAC
* * * * * * * * * *
18538155 TCCCCGACTTGTGCATTATGCCTCTCAGGCCGGCTCAACGCCGGTACGCTCGTTTCATGAGTTGA
1 TCCCTGACTTATGCATTCTGCCTCTCAGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* * *** *
18538220 TTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATTGGACCGAGGGTTGCGGTAGCAGG
66 CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG-CCAGACCGAGGGTTGCGGCAGCAGG
* **
18538283 ATTGACAGCACATAG-GGGGGATC-AGGTCGG
129 ATCGACAGCACATAGAGGGGGATCGA-GTCAC
* * * *
18538313 TCCCTGACTTTTGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCGCGCTCGTTTCATGGGTTGG
1 TCCCTGACTTATGCATTCTGCCTCTCAGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
*
18538378 CTTAGGCATGCGGAGTT-ATTTCCATGTCTAAGCA
66 CTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCA
18538412 TACAGAGTTT
Statistics
Matches: 205, Mismatches: 46, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 93 0.45
159 110 0.54
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.26
Consensus pattern (159 bp):
TCCCTGACTTATGCATTCTGCCTCTCAGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGCGGCAGCAGGAT
CGACAGCACATAGAGGGGGATCGAGTCAC
Found at i:18538752 original size:171 final size:171
Alignment explanation
Indices: 18538442--18538765 Score: 387
Period size: 171 Copynumber: 1.9 Consensus size: 171
18538432 TAAGATCGGA
* * *
18538442 CTGGACCGAGGGTTGCGGTAGCAGGACCAACAGTAGGATCGACAGCACGCAGAGGGGGACCGGGC
1 CTGGACCGAGGGTTGCGATAGCAGGACCAACAGCAGGATCGACAGCACGCAGAGGGGGACCAGGC
* * * * * ** *
18538507 TGATCCCTGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGGCCGCACATTCATTCCATGGAT
66 TAATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAGCACCCGCACACTCATTCCATGGAT
* * *
18538572 TGGCTTAGGCATATGGCGTTCATTCCATGTCTAAGCCCCAG
131 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* * ** *
18538613 CTGGATCGAGGGTTGTGATAGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGATCAGGC
1 CTGGACCGAGGGTTGCGATAGCAGGACCAACAGCAGGATCGACAGCACGCAGAGGGGGACCAGGC
* ** ** * * * * *
18538678 TAATCCCCGACTTGCACATTATGCCTTTTTGGTCGGTTGAGCACCCGCACGCTCGTTTCATGGGT
66 TAATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAGCACCCGCACACTCATTCCATGGAT
18538743 TGACTTAGGCATACGGAGTTCAT
131 TGACTTAGGCATACGGAGTTCAT
18538766 CCCCAGTCTA
Statistics
Matches: 124, Mismatches: 29, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
171 124 1.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (171 bp):
CTGGACCGAGGGTTGCGATAGCAGGACCAACAGCAGGATCGACAGCACGCAGAGGGGGACCAGGC
TAATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAGCACCCGCACACTCATTCCATGGAT
TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:18538778 original size:26 final size:26
Alignment explanation
Indices: 18538748--18538801 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
18538738 TGGGTTGACT
18538748 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
*
18538774 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
18538800 TA
1 TA
18538802 AGATCAGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:18539289 original size:26 final size:26
Alignment explanation
Indices: 18539255--18539304 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
18539245 GGCTTAGGCT
* *
18539255 TACGGAGTTCATTC-CATGTCTAAGCA
1 TACGAAGTTAATTCTCA-GTCTAAGCA
18539281 TACGAAGTTAATTCTCAGTCTAAG
1 TACGAAGTTAATTCTCAGTCTAAG
18539305 ATTGTGAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTAATTCTCAGTCTAAGCA
Found at i:18540489 original size:26 final size:26
Alignment explanation
Indices: 18540460--18540512 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18540450 GTTGGCTTAG
18540460 GCATACCGAGTTCAAT-CCATGTCTAA
1 GCATACCGAGTTCAATCCCA-GTCTAA
** *
18540486 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCAATCCCAGTCTAA
18540512 G
1 G
18540513 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCAATCCCAGTCTAA
Found at i:18540866 original size:26 final size:26
Alignment explanation
Indices: 18540836--18540888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18540826 GTTGAATTAG
18540836 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18540862 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18540888 G
1 G
18540889 ATCAAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18542813 original size:26 final size:26
Alignment explanation
Indices: 18542777--18542829 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18542767 GTTGACTCAG
18542777 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18542803 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18542829 G
1 G
18542830 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18543156 original size:26 final size:26
Alignment explanation
Indices: 18543120--18543169 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18543110 GTTGGCTTAG
*
18543120 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
18543146 GCATACGGAGTTCATTCCAAGTCT
1 GCATACGGAGTTCATTCCAAGTCT
18543170 TTGATTTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:18551225 original size:26 final size:26
Alignment explanation
Indices: 18551173--18551225 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18551163 GTTGGCTGAG
*
18551173 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
18551199 GCATATGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
18551225 G
1 G
18551226 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:18551572 original size:26 final size:26
Alignment explanation
Indices: 18551536--18551588 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18551526 GTTGGCTTAG
18551536 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18551562 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18551588 G
1 G
18551589 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18551931 original size:26 final size:26
Alignment explanation
Indices: 18551880--18551931 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18551870 TTGGCTTAGC
*
18551880 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTATAAG
*
18551906 CATATGGAGTTCATTCCCA-GTATAAG
1 CATACGGAGTTCATT-CCATGTATAAG
18551932 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTATAAG
Found at i:18552609 original size:26 final size:26
Alignment explanation
Indices: 18552573--18552625 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18552563 GTTGACTTAG
*
18552573 GCATATGGAGTGCA-TCCGCAGTCTAA
1 GCATACGGAGTGCATTCC-CAGTCTAA
*
18552599 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
18552625 G
1 G
18552626 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:18553100 original size:159 final size:157
Alignment explanation
Indices: 18552599--18553101 Score: 501
Period size: 159 Copynumber: 3.2 Consensus size: 157
18552589 CGCAGTCTAA
* *
18552599 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGATA
* * *
18552664 GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACGCAGGGGGGA-CAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACC
* *
18552729 CACACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
18552757 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGCGGCAGCAG-GATCG
** * * * * * * * *
18552819 GCAGCACACAGAGAGGGACTGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCAGCTCAT
63 ATAGCACGCAG-GGGGGACAG-GCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* *
18552884 CACCCGAACGCTCGTTTCGTGGGTTGACTTAG
126 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
18552916 GCATACAGAGTTCTTTCCCAATCTAAGATCAGACCCGAACCGAGGGTTGCGGCAGCAGGATTGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * ** * ** *
18552981 AGCACGTAGGGGGGACCAGGTCGGTCCCCAGCTTATGTATTCTGCCTCTTTGGCCGGCTGAGCAC
65 AGCACGCAGGGGGGA-CAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCAC
**
18553046 CCGCACGCTTATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
18553075 GCATACGGAGTTCACT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
18553102 CATACGGAGT
Statistics
Matches: 269, Mismatches: 65, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 59 0.22
159 171 0.64
160 34 0.13
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18553111 original size:26 final size:26
Alignment explanation
Indices: 18553075--18553127 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18553065 GTTGGCTTAG
18553075 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
18553101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
18553127 G
1 G
18553128 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:18553499 original size:710 final size:707
Alignment explanation
Indices: 18552560--18553935 Score: 1778
Period size: 707 Copynumber: 1.9 Consensus size: 707
18552550 GCTCGTTTTG
* * *
18552560 TGGGTTGACTTAGGCATATGGAGTGCATCCGCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTAACTTAGGCATACGGAGTGCATCCGCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAA
* * *
18552625 GATCAGACCGAATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGATCGGGCCGATCC
66 GACCAGACCGAATCGAGGGTTGCGACAGCAGGATCGATAGCACGCA-GGGGGACCGGGACGATCC
* * * * *
18552690 TCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTT
130 CCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCACACGCCCATTTCATGGGTTGGCTT
* *
18552755 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGAG-ACCG
195 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGGGGCAGCG-GCACCG
* * *
18552819 GCAGCACACAGAGAGGGACTGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCAGCTCAT
259 GCAGCACACAGAGAGGGACTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCG-GCAG-GC-T
* * *
18552884 CACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCTTTCCCAATCTAAGATCAGA
321 CACCCGAACACTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGA
* * * * **
18552949 CCCGAACCGAGGGTTGCGGCAGCAGGATTGATAGCACG-TAGGGGGGACCAGG-TCGGTCCCCAG
386 -CCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGAACCAGGCTAAGTCCCCA-
* ** * * *
18553012 CTTATGTATTCTGCCTCTTTGGCCGGCTGAGCACCCGCACGCTTATTTCGTGGGTTGGCTTAGGC
449 CTTATGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* * * *
18553077 ATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATC-
514 ATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGA-CG
** * * *
18553141 GAGGGTTACGACAGCAGAACCAGCAGCAGGATCGGTAGCACGTAGGGAGAGATCGGGCCGATCCT
578 GAGGGTTACGACAGCAGAACCAGCAGCAGGATCGACAGCACGCAGGG-GAGACCGGGCCGATCCC
** *
18553206 CGACTTGTGCATTCTGCCTCTCCGGACAGCCTCTTCGGCCAGCTGAGTGCCCGTCCGCCCGTTTC
642 CGACTTGCACATACTGCCTCTCCGGACAGCCTCTTCGGCCAGCTGAGTGCCCGTCCGCCCGTTTC
18553271 A
707 A
*
18553272 TGGGTTAACTTAGGCATACGGAGTTCATCC-CTAGTCTAAGCATACGGAGTTCATTCCCAGTCAA
1 TGGGTTAACTTAGGCATACGGAGTGCATCCGC-AGTCTAAGCATACGGAGTTCATTCCCAGTCAA
* ** * *
18553336 AGACC-GAACCGGA-CTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCA-GGGGACCGGGATGAT
65 AGACCAG-ACCGAATC-GAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGACCGGGACGAT
* * *
18553398 CCCCGGCTTGCGCATTCTACCTTTTCGATCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGC
128 CCCCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCACACGCCCATTTCATGGGTTGGC
** *
18553463 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGTTTGAGGGTTGGGGTAGCGGCACC
193 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGGGGCAGCGGCACC
** * * * * * *
18553528 GGCAGCACGTAGAGGGGGATTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCTGGCTGGCTCA
258 GGCAGCACACAGAGAGGGACTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCAGGCTCA
* * * * *
18553593 CCCGTACACTTGTTTCGTGGGATGACTTAGGTATACAGAGTTCATTCCCAATCTAAGATCTGATC
323 CCCGAACACTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACC
* * * * * * * * *
18553658 GGACTGAGGGTTGCGGTAGTAGGATCGACAGCATGCAAGGGGGAACCGGGCTAATTCCCGACTTG
388 GAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGAACCAGGCTAAGTCCCCACTTA
* * **
18553723 TGCATTCTGCTTCTCCGATCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
453 TGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
* *
18553788 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATTAGACCAGACGGAGGG
518 GGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACGGAGGG
** * * * * *
18553853 TTACGGTAGCAGGACTAGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTT
583 TTACGACAGCAGAACCAGCAGCAGGATCGACAGCACGCAGGGGAGACCGGGCCGATCCCCGACTT
18553918 GCACATACTGCCTCTCCG
648 GCACATACTGCCTCTCCG
18553936 ATCGACTGAG
Statistics
Matches: 567, Mismatches: 90, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
706 64 0.11
707 219 0.39
708 7 0.01
709 3 0.01
710 175 0.31
711 3 0.01
712 96 0.17
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (707 bp):
TGGGTTAACTTAGGCATACGGAGTGCATCCGCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAA
GACCAGACCGAATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGACCGGGACGATCCC
CGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTA
GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGGGGCAGCGGCACCGGC
AGCACACAGAGAGGGACTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCAGGCTCACCC
GAACACTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAA
CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGAACCAGGCTAAGTCCCCACTTATGC
ATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGA
GTTCACTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACGGAGGGTTA
CGACAGCAGAACCAGCAGCAGGATCGACAGCACGCAGGGGAGACCGGGCCGATCCCCGACTTGCA
CATACTGCCTCTCCGGACAGCCTCTTCGGCCAGCTGAGTGCCCGTCCGCCCGTTTCA
Found at i:18553812 original size:26 final size:26
Alignment explanation
Indices: 18553782--18553834 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18553772 GTTGGCTTAG
*
18553782 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
18553808 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
18553834 G
1 G
18553835 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:18554007 original size:26 final size:26
Alignment explanation
Indices: 18553978--18554030 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18553968 GTTGGCTTAG
*
18553978 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
18554004 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18554030 G
1 G
18554031 AATTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18554116 original size:11 final size:11
Alignment explanation
Indices: 18554100--18554136 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
18554090 CTCTGGGTAA
*
18554100 CATCATTGGAG
1 CATCATCGGAG
18554111 CATCATCGGAG
1 CATCATCGGAG
18554122 CATCATCGGAG
1 CATCATCGGAG
18554133 CATC
1 CATC
18554137 GCTGGAGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:18554760 original size:26 final size:26
Alignment explanation
Indices: 18554724--18554774 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18554714 GTTGACTTAG
18554724 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAGTCTAT
*
18554750 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
18554775 AGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAT
Found at i:18555225 original size:158 final size:158
Alignment explanation
Indices: 18554750--18555249 Score: 535
Period size: 159 Copynumber: 3.2 Consensus size: 158
18554740 CCCAGTCTAT
* *
18554750 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTGGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
18554814 AGCAC-CTAGG-GGGATCGAG-CGATCCCCGCCTTGCACATTTTGCCTCTCCGGTCGGTTGAGCG
65 AGCACGC-AGGAGGGATCGAGTCGATCCCCGGCTTGCACATTATACCTCTCCGGTCGGCTGAGCG
* * * **
18554876 CCCGCACACCCATTTTGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * * *
18554906 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
18554971 GCACGTAGAAGGGGATCGCGTCGATCCCCGGCTTGTACGTTATACCCCTCCGGTCGGCTCAGCGC
66 GCACGCAGGA-GGGATCGAGTCGATCCCCGGCTTGCACATTATACCTCTCCGGTCGGCTGAGCGC
* *
18555036 CCGCACGCTCGTTTCATGGGTTGACTCAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * ** * *
18555065 GCATACGAAGTTCATTCCCA-GTCTAAGATCAAACCGAATCGAGGGTTGCAGTTGCAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
18555129 AGCACGCAGGGAGGGACCGGGTCGGT-CCCGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCT
65 AGCACGCA-GGAGGGATCGAGTCGATCCCCGGCTTGCACATTATACCTCTCCGGTCGGCTGAGCG
18555193 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
18555223 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18555250 CATACGGAGT
Statistics
Matches: 276, Mismatches: 60, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
155 3 0.01
156 56 0.20
157 3 0.01
158 90 0.33
159 119 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGAGGGATCGAGTCGATCCCCGGCTTGCACATTATACCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:18555253 original size:26 final size:26
Alignment explanation
Indices: 18555223--18555275 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18555213 GTTGGCTTAG
18555223 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18555249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18555275 G
1 G
18555276 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18555969 original size:26 final size:26
Alignment explanation
Indices: 18555933--18555985 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18555923 GTTGGCTTAT
18555933 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18555959 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18555985 G
1 G
18555986 TCAGACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18556135 original size:183 final size:183
Alignment explanation
Indices: 18555858--18556561 Score: 688
Period size: 183 Copynumber: 3.7 Consensus size: 183
18555848 GAGGGGATCG
* * * *
18555858 GGCCAGTCCCTAGCTTGCGCATTCTGA-C-CTCCGGTCGGCTGAGTGCCCGCACGTTCGTTTCGT
1 GGCCAGTCCCTGGCTTGCGCATTCT-ACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
18555921 GGGTTGGCTTATGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
*
18555986 -TCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACACAGGGGGGACCA
130 ATC-GACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGACCA
*
18556040 GGCCGGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
1 GGCCAGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
18556105 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCATACGAAGTTCATTCCTAGTCTAAGA
66 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * *
18556170 TCGGACCGGATCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGGACT
131 TC-GACCGGATCGAGGGTTGCGGTAGCAGGATC-G-A-C---A--G-CA-CAC--AGGGGGGACC
*
18556235 G
183 A
* * * *
18556236 GGTC-GATCCCCT-GCTTGTGTATTCTACCTCTCCGACCGACCTCTCCGGTAGGCTGAGCACCCG
1 GGCCAG-T-CCCTGGCTTGCGCATTCTACCTCTCCG---G------CC----GGCTGAGCGCCCG
* * * *
18556299 TACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGAAGTT
51 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGAAGTT
* * * * * ** * *
18556363 CATTCCCAGCCTATGATCGAACCGGATCGAAGGTTGTGGCAGCAGGATCGGTAACACGCAGGGGG
115 CATTCCCAGTCTAAGATCG-ACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGG
*
18556428 GA-CT
179 GACCA
* * * * * * *
18556432 GAGCCAGTCCCTGGCTT-CGCATTCTACCTTTTCGACTGGCTGAGTGTCCGCACGCTCATTTCGT
1 G-GCCAGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
18556496 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAA
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA-AGTTCATTCCCAGTCTAA
18556560 GA
129 GA
18556562 GTTTGAGCCA
Statistics
Matches: 430, Mismatches: 55, Indels: 73
0.77 0.10 0.13
Matches are distributed among these distances:
181 1 0.00
182 28 0.07
183 170 0.40
184 29 0.07
185 1 0.00
186 1 0.00
187 2 0.00
190 1 0.00
192 1 0.00
193 2 0.00
194 3 0.01
195 1 0.00
196 51 0.12
197 19 0.04
198 1 0.00
199 3 0.01
200 2 0.00
203 1 0.00
205 2 0.00
208 2 0.00
209 106 0.25
210 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (183 bp):
GGCCAGTCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGACCA
Found at i:18556544 original size:26 final size:26
Alignment explanation
Indices: 18556508--18556560 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18556498 GTTGGCTTAG
*
18556508 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18556534 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18556560 G
1 G
18556561 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18557005 original size:165 final size:165
Alignment explanation
Indices: 18556745--18557072 Score: 397
Period size: 165 Copynumber: 2.0 Consensus size: 165
18556735 ATGGCTTAGC
* ** * *
18556745 CATAGGGAGTTCATTCCATGTCTAAGCCCTAGCAGGATTGAGGGTTGTGGTAGCGGGACCGATAG
1 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGCGGGACCGACAG
* * **
18556810 CACATAGAGGGGGATCAGGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAATGCC
66 CACACAGAGGGGGATCAGGGCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACC
* * *
18556875 TGCACGCTCTTTTCGTGGGTTGACTTAGGCATAGG
131 CGCACGCTCGTTCCGTGGGTTGACTTAGGCATAGG
* * * * * *
18556910 CATATGGAGTTCATTCCATGTCTACGCCCCAGCTGGACCGAGGGTTGTGGCAGTGGGATCGGCAG
1 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGCGGGACCGACAG
** * * * * * *
18556975 CATGCAGAGGGGGA-CTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCAC
66 CACACAGAGGGGGATCAGGGC-AATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACAC
*
18557039 CCGCACGCTCGTTCCGTGGGTTGGCTTAGGCATA
130 CCGCACGCTCGTTCCGTGGGTTGACTTAGGCATA
18557073 CGGAGTTCAT
Statistics
Matches: 135, Mismatches: 27, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
164 4 0.03
165 131 0.97
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (165 bp):
CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGCGGGACCGACAG
CACACAGAGGGGGATCAGGGCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACC
CGCACGCTCGTTCCGTGGGTTGACTTAGGCATAGG
Found at i:18557827 original size:26 final size:26
Alignment explanation
Indices: 18557787--18557842 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
18557777 TGGGTTGACT
18557787 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
18557813 TAAGCATAC-GAAGTTCATTCCCAGTC
1 TAAGCATACAG-AGTTCATCCCCAGTC
18557839 TAAG
1 TAAG
18557843 ATCGAACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:18558337 original size:25 final size:26
Alignment explanation
Indices: 18558288--18558338 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
18558278 GTTGGCTTAG
*
18558288 GCATATAGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCATATCTAA
18558314 GCATAT-GAGTTCATTCCCA-ATCTAA
1 GCATATAGAGTTCATT-CCATATCTAA
18558339 ATTGGACCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCATATCTAA
Found at i:18558736 original size:26 final size:27
Alignment explanation
Indices: 18558683--18558736 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
18558673 TTGACCTTAG
*
18558683 GCATACGGAGTTCCATCCCCAGTCTAA
1 GCATACGAAGTTCCATCCCCAGTCTAA
*
18558710 GCATACGAAGTT-CATTCCCAGTCTAA
1 GCATACGAAGTTCCATCCCCAGTCTAA
18558736 G
1 G
18558737 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (27 bp):
GCATACGAAGTTCCATCCCCAGTCTAA
Found at i:18559072 original size:26 final size:26
Alignment explanation
Indices: 18559036--18559086 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18559026 TGGCTTAGGC
*
18559036 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGAAGTTCATTCCCA-GTCTAAGT
18559062 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
18559087 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:18559273 original size:26 final size:26
Alignment explanation
Indices: 18559244--18559296 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18559234 GTTGACTTAG
*
18559244 GCATACGGAGTT-AATCCTCAGTCTAA
1 GCATACGAAGTTCAATCC-CAGTCTAA
*
18559270 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
18559296 G
1 G
18559297 ATCAAACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:18559571 original size:159 final size:158
Alignment explanation
Indices: 18559322--18559612 Score: 374
Period size: 159 Copynumber: 1.8 Consensus size: 158
18559312 GGGTTGCGAC
* * * * ** *
18559322 AGCAGGATCGGCAGCACGTAAGGGGGATCGGGCCGATCCTCGACTTGTGCATTCTGCCTTTTCGA
1 AGCAGGATCGGCAGCACGCAAGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTATTCGA
* *
18559387 CCGGCTGAGCGCCCGCACACCCGTTTCTTGGCTTGGCTTAGGTATA-GAGAGTTCATTCCATGTC
66 CCGGCTGAGCGCCCGCACACCCGTTTCATGGCTTGGCTTAGGCATACG-GAGTTCATTCCATGTC
18559451 TAAGCCCCAGTCAGACCGAGGGTTGTGGT
130 TAAGCCCCAGTCAGACCGAGGGTTGTGGT
18559480 AGCAGGA-CTGGCAGCACGCAGAGGGGGACCGGGCCAATCCCC-AGCTTGCACATTCTGCCTCAT
1 AGCAGGATC-GGCAGCACGCA-AGGGGGACCGGGCCAATCCCCGA-CTTGCACATTCTGCCT-AT
* * * * * *
18559543 T-GGCCGGCTGAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
62 TCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCAT
18559607 GTCTAA
127 GTCTAA
18559613 ACATACAGAG
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
157 1 0.01
158 18 0.16
159 91 0.81
160 3 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCAGGATCGGCAGCACGCAAGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTATTCGA
CCGGCTGAGCGCCCGCACACCCGTTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCCAGTCAGACCGAGGGTTGTGGT
Found at i:18559618 original size:26 final size:26
Alignment explanation
Indices: 18559588--18559638 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18559578 TTGGCTTAGG
*
18559588 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACAGAGTTCATTCCCA-GTCTAAA
18559614 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
18559639 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:18560044 original size:26 final size:26
Alignment explanation
Indices: 18560008--18560060 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18559998 TTTGACTTAG
*
18560008 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACCGAGTTCATTCC-CAGTCTAA
18560034 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
18560060 G
1 G
18560061 ATCAAATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:18560406 original size:159 final size:158
Alignment explanation
Indices: 18560243--18560535 Score: 358
Period size: 158 Copynumber: 1.8 Consensus size: 158
18560233 AGAGTTATGG
** * *** * * *
18560243 TAGCGGGATCGGTAGCACGTAAAGGGGGATCGAGTTGATCCTCGGTTTACGCATTATGCCTCTCC
1 TAGCGGGATCGACAACACGT-AAGGGGGATCGAACCGATCCCCGGCTTACGCATTATACCTCTCC
* *
18560308 GG-CTGGCTCAGCACTCAAACGCTCATTTCGTGGGTTGAG-TTAGGCATACGGAGTTCATTCCCA
65 GGTC-GACTCAGCACCCAAACGCTCATTTCGTGGGTTG-GCTTAGGCATACGGAGTTCATT-CCA
18560371 -GTCTAAGATTGGATCAGATCGAGGGTTGCGA
127 TGTCTAAGATTGGATCAGATCGAGGGTTGCGA
* * *
18560402 TAGCGGGATCGACAACACGTAGGGGGGATCGAACCGATCCCCGGCTTGCGCATTCTACCTCTCCG
1 TAGCGGGATCGACAACACGTAAGGGGGATCGAACCGATCCCCGGCTTACGCATTATACCTCTCCG
* * ** *
18560467 GTCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 GTCGACTCAGCACCCAAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
18560532 TAAG
131 TAAG
18560536 CATACGGAGT
Statistics
Matches: 112, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
157 4 0.04
158 90 0.80
159 18 0.16
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
TAGCGGGATCGACAACACGTAAGGGGGATCGAACCGATCCCCGGCTTACGCATTATACCTCTCCG
GTCGACTCAGCACCCAAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGATTGGATCAGATCGAGGGTTGCGA
Found at i:18560580 original size:184 final size:184
Alignment explanation
Indices: 18560351--18560914 Score: 539
Period size: 196 Copynumber: 3.0 Consensus size: 184
18560341 GTTGAGTTAG
** * * *
18560351 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGATAGCGGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGATAGCAGGATCGACA
* * * * **
18560416 ACACGTAGGGGGGATCGAACCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGATTGAGCACC
66 ACACGTAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCC
* *
18560481 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCATGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
18560535 GCATACGGAGTTCATTCCCAGTTTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGA-CCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGATAGCAGGATCGA-C
* * * * * * * *
18560599 AACAAGATCAGCAACATGCAAGGTGGACCTAGTTGAACCCCGGGTTGCGCATTATGCCTCTCCAG
65 AACACG-T-AG------G---GG-GGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
* * * *
18560664 TTGGCTGAGTGCCCGCATGCACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
118 TCGACTGAGTGCCCGCATGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC
18560728 TAA
182 TAA
* * * *
18560731 GCATACGGAGTTCATTCCCAGTCTAAGATCA-AACTAGACCGAAGGTTAC-AGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTACGA-TAGCAGGATCGA
* * * * * *
18560794 TAGCACG-ATGGGGGATCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTCCGG-C-AGCTGAGT
64 CAACACGTAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGA-CTGAGT
* * * * *
18560856 GCCCGCATGCCCGTTACGTGGCTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAA
128 GCCCGCATGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
18560913 GC
1 GC
18560915 CCCAACCGGA
Statistics
Matches: 303, Mismatches: 58, Indels: 40
0.76 0.14 0.10
Matches are distributed among these distances:
181 2 0.01
182 55 0.18
183 33 0.11
184 60 0.20
185 1 0.00
186 2 0.01
187 1 0.00
192 1 0.00
193 1 0.00
195 4 0.01
196 139 0.46
197 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGATAGCAGGATCGACA
ACACGTAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCC
CGCATGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:18560734 original size:26 final size:26
Alignment explanation
Indices: 18560705--18560757 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18560695 GTTGACTTAG
18560705 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18560731 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18560757 G
1 G
18560758 ATCAAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18561185 original size:26 final size:26
Alignment explanation
Indices: 18561149--18561201 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18561139 GTTGGCTTAG
18561149 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18561175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18561201 G
1 G
18561202 ATCAAACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18561388 original size:26 final size:26
Alignment explanation
Indices: 18561359--18561411 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18561349 GTTGACTTAG
18561359 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18561385 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18561411 G
1 G
18561412 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.