Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 167 of 402
Found at i:18561740 original size:159 final size:151
Alignment explanation
Indices: 18561385--18561778 Score: 385
Period size: 159 Copynumber: 2.6 Consensus size: 151
18561375 CCCAGTCTAA
* * *
18561385 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTTTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
* ** * *
18561450 GCACGCAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCCACCCACACGC
66 GCACGCAGGGGGGACCGGGCTGACCCCCAGCTTGCGCACTATGCCTCTTCGACCCACCCACACGC
*
18561515 TCGTTTCATGGGTTGGCTTAG
131 TCGTTTCATGGGTTGACTTAG
** ** * * ** ** **
18561536 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGTAGTGGGATCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGATCGAC
** *
18561600 AGCACGCAGAGGGGGATTGGGCTGACCCCCAGCTTGCGCACTATGCCTCTTCGGCCGGTTCAGCA
65 AGCACGCAG-GGGGGACCGGGCTGACCCCCAGCTTGCGCACTATGCCTCTTC-GAC----C--CA
* **
18561665 CCCGCACGCTCGTTTTGTGGGTTGACTTAG
122 CCCACACGCTCGTTTCATGGGTTGACTTAG
* * * *
18561695 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGATCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
** * *
18561760 TAACGTAGGGGGGATCGGG
66 GCACGCAGGGGGGACCGGG
18561779 TCGGTCCCCG
Statistics
Matches: 188, Mismatches: 45, Indels: 13
0.76 0.18 0.05
Matches are distributed among these distances:
150 3 0.02
151 54 0.29
152 35 0.19
153 2 0.01
157 1 0.01
158 10 0.05
159 80 0.43
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (151 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCTGACCCCCAGCTTGCGCACTATGCCTCTTCGACCCACCCACACGC
TCGTTTCATGGGTTGACTTAG
Found at i:18561887 original size:26 final size:26
Alignment explanation
Indices: 18561851--18561906 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
18561841 TGGGTTGGCT
18561851 TAGGCATACGGAGTTCATT-CCATGTC
1 TAGGCATACGGAGTTCATTCCCA-GTC
18561877 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
18561903 TAGG
1 TAGG
18561907 ATCAGATCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:18562462 original size:354 final size:355
Alignment explanation
Indices: 18561665--18562420 Score: 1212
Period size: 355 Copynumber: 2.1 Consensus size: 355
18561655 CGGTTCAGCA
*
18561665 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCGGACC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCGGACC
* * * * *
18561730 AGATCGAGGGTTGCGATAGCAGGATCGACATAACGTAGGGGGGATCGGGTCGGTCCCCGACTTAC
66 AGACCGAGGGTTGTGATAGCAGGATCGACAGAACGCAGGGGAGATCGGGTCGGTCCCCGACTTAC
* * *
18561795 GCATTCTATCTTTTCGACCAGCTGAGCGCCCACACGCTCTTTTCCGTGGGTTGGCTTAGGCATAC
131 GCATTCTACCTTTTCGACCAGCTGAGCACCCACACGCTCATTTCCGTGGGTTGGCTTAGGCATAC
* *
18561860 GGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGATCGGACCGAGGG
196 GGAGTTCATTCCATGTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGG
*
18561925 TTACGACAGCAGGACCAGCAGCAGGATCTACAGCACACAGGAAGAGACCAGGCTGATCCCGGCTT
261 TTACGACAGCAGGACCAGCAGCAGGATCTACAGCACACAGGAAGAGACCAGGCCGATCCCGGCTT
* * *
18561990 GCATATTCTGCCTCTCTGACCGACTGAGCG
326 ACATATTCTACCTCTCCGACCGACTGAGCG
18562020 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCGGACC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCGGACC
* * *
18562085 AGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGAGATCGGGTCGGTCCCCGACTTAT
66 AGACCGAGGGTTGTGATAGCAGGATCGACAGAACGCAGGGGAGATCGGGTCGGTCCCCGACTTAC
*
18562150 GCATTCTACCTTTTC-AGCCAGCTGAGCACCCGCACGCTCATTT-CGTGGGTTGGCTTAGGCATA
131 GCATTCTACCTTTTCGA-CCAGCTGAGCACCCACACGCTCATTTCCGTGGGTTGGCTTAGGCATA
*
18562213 CGGAGTTCATTCCATGTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGG
195 CGGAGTTCATTCCATGTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGG
* ** **
18562278 GTTACGACAGCAGGACCAGCAGCAGGATCTGCAGCACACAGGGGGAGACTGGGCCGATCCCCGGC
260 GTTACGACAGCAGGACCAGCAGCAGGATCTACAGCACACAGGAAGAGACCAGGCCGAT-CCCGGC
* * *
18562343 TTACGTATTCTACCTCTCCGACTGGCTGAGCG
324 TTACATATTCTACCTCTCCGACCGACTGAGCG
*
18562375 -CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
18562421 AATGTCTAAG
Statistics
Matches: 370, Mismatches: 29, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
354 180 0.49
355 190 0.51
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (355 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCGGACC
AGACCGAGGGTTGTGATAGCAGGATCGACAGAACGCAGGGGAGATCGGGTCGGTCCCCGACTTAC
GCATTCTACCTTTTCGACCAGCTGAGCACCCACACGCTCATTTCCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGG
TTACGACAGCAGGACCAGCAGCAGGATCTACAGCACACAGGAAGAGACCAGGCCGATCCCGGCTT
ACATATTCTACCTCTCCGACCGACTGAGCG
Found at i:18563530 original size:26 final size:26
Alignment explanation
Indices: 18563501--18563553 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18563491 CCAATCCGAT
18563501 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18563527 CTTAGACATGGAGTGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18563553 C
1 C
18563554 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18565057 original size:682 final size:676
Alignment explanation
Indices: 18563855--18565156 Score: 1478
Period size: 682 Copynumber: 1.9 Consensus size: 676
18563845 GCTTAGACAT
** * * **
18563855 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAGTCGATCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGTGGGCGCTCAACCGATCGGAG
* * *
18563920 AGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTGTCGCA
66 AGGCAAAATACACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTGTCGCA
* * ** * *
18563985 ACCCTTGATTCGGTCCGATCTTAGATTGAGAATGAACTCTGTATGCTTAGACTGGGGATGCACTC
131 ACCCTCGATTCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
* *
18564050 CATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAAAGAGGCATAATGC
196 CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGAGGCATAATGC
* * *
18564115 GCAAGTCGGAGATCAGCTCGATCCCCCTCTGCATGCTGCTGATCCCACTGCCGATCCTACTACCA
261 GCAAGTCGGAGATCAGCCCGAT-CCCCTCTGCATACTGCTG----C-CTGCCGATCCCACTACCA
* * ** *
18564180 CAACCCTCGGTCTAGCTGGGGCTCAGACATAGAATGAACTCTGTATAGCTAAGCCAACCAACAAA
320 CAACCCTCAGTCCAGCTGGGGCTCAGACATAGAATGAACTCCCTATAGCTAAGACAACCAACAAA
* * * * * *
18564245 ACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCTGGTCC
385 ACGAGCATGCAGGCGCTCAACCGACCGGAGAGGTAGAATGCGTAAACCAAGGATCAGCCCGGTCC
** * * *
18564310 CCCTGCGTGCTATCGATCCTACTGCTGTGACCCTCGATTCAGTCTGATCTTACACTGGGAATGAA
450 CCCTGCGTGCTATCGATCCTACTGCTGCAACCCTCGAGTCAGTCCGATCTTACACTGGAAATGAA
* * * * **
18564375 CTTCGTATGCTTAGACATGAAACGAACTCTGTATGCGTAAGCCAACCCATGAAACGAGTGTGCGG
515 CTCCGTATGCTTAGACATGAAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAAAGTGCGG
* *
18564440 GCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATTGGTCCGGTCCCCTCCGCTCTGT
580 GCGCTCAGTCGGTCGGAGAGACAGAATGCGCAAGCCGAGGATTGGTCCGGTCCCCTCCGCTCTGT
18564505 CGTAATCCTCGGTCCGGTCTGATCTTAGATTG
645 CGTAATCCTCGGTCCGGTCTGATCTTAGATTG
*
18564537 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGTGGGCGCTCAACCGATCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGTGGGCGCTCAACCGATCGGAG
** ** * **
18564602 AGG-AAAATACGTAAGCCGAGGATCGGCCCGATCCTTCCTGTGTGCTGTCGATCCTGCTGCTGGT
66 AGGCAAAATACACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTACCGAT-C--CTGCT-G-
* *
18564666 CCTGCTGCTACAACCCTCGATTCGGTCCGATCTTATACTGGGAATGAACTCCATATGCTTAGACA
126 --T-C-G---CAACCCTCGATTCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGAC-
* * * * * **
18564731 T-GGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGG
183 TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAA
* * ** * *
18564795 AGAGGCATAATGCTCAAG-CTGGGGATTGGCCCGGT-CCCTCT-C-TAC-G-TG-CTGCCGGTCC
248 AGAGGCATAATGCGCAAGTC-GGAGATCAGCCCGATCCCCTCTGCATACTGCTGCCTGCCGATCC
* * * *
18564853 CACTACCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTAT-GCCTAAGACA
312 CACTACCACAACCCTCAGTCCAGCTGGGGCTCAGACATAGAATGAACTCCCTATAG-CTAAGACA
* ** * * ** *
18564917 ACCCATGAAATGGGCATGCAGGCTTTCAGCC-AGCCGGAGAGGTAGAATGCGTAAACCAAGGATC
376 ACCAACAAAACGAGCATGCAGGCGCTCAACCGA-CCGGAGAGGTAGAATGCGTAAACCAAGGATC
* * * * *
18564981 AGCCCGGTCCCTCCTGCGTGCTGTCGATCCTGCT-ATCGCAACCGTC-AGTCCGATCCGATCTTA
440 AGCCCGGTCCC-CCTGCGTGCTATCGATCCTACTGCT-GCAACCCTCGAGTCAG-TCCGATCTTA
* * * *
18565044 GACTTGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
502 CACTGGAAATGAACTCCGTATGCTTAGACATGAAACGAACTCCGTATGCCTAAGCCAACCCACGA
* *
18565109 AACGAAAGTGCGGGTGCTCAGTCGGTCGGAGAGATAGAATGCGCAAGC
567 AACGAAAGTGCGGGCGCTCAGTCGGTCGGAGAGACAGAATGCGCAAGC
18565157 TGGGGAACTA
Statistics
Matches: 511, Mismatches: 90, Indels: 38
0.80 0.14 0.06
Matches are distributed among these distances:
680 2 0.00
681 164 0.32
682 195 0.38
684 5 0.01
685 1 0.00
687 2 0.00
688 2 0.00
689 3 0.01
690 2 0.00
691 6 0.01
692 1 0.00
693 127 0.25
694 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (676 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGTGGGCGCTCAACCGATCGGAG
AGGCAAAATACACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTGTCGCA
ACCCTCGATTCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGAGGCATAATGC
GCAAGTCGGAGATCAGCCCGATCCCCTCTGCATACTGCTGCCTGCCGATCCCACTACCACAACCC
TCAGTCCAGCTGGGGCTCAGACATAGAATGAACTCCCTATAGCTAAGACAACCAACAAAACGAGC
ATGCAGGCGCTCAACCGACCGGAGAGGTAGAATGCGTAAACCAAGGATCAGCCCGGTCCCCCTGC
GTGCTATCGATCCTACTGCTGCAACCCTCGAGTCAGTCCGATCTTACACTGGAAATGAACTCCGT
ATGCTTAGACATGAAACGAACTCCGTATGCCTAAGCCAACCCACGAAACGAAAGTGCGGGCGCTC
AGTCGGTCGGAGAGACAGAATGCGCAAGCCGAGGATTGGTCCGGTCCCCTCCGCTCTGTCGTAAT
CCTCGGTCCGGTCTGATCTTAGATTG
Found at i:18565069 original size:26 final size:26
Alignment explanation
Indices: 18565040--18565092 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18565030 CCGATCCGAT
*
18565040 CTTAGACTTGAAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
*
18565066 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
18565092 C
1 C
18565093 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCGTATG
Found at i:18565348 original size:343 final size:343
Alignment explanation
Indices: 18564691--18565353 Score: 778
Period size: 343 Copynumber: 1.9 Consensus size: 343
18564681 CTCGATTCGG
* * *
18564691 TCCGATCTTATACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGGCTAAGC
1 TCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* ** * * * * *
18564756 CAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGCTCAAGCTGGGGAT
66 CAACCCACGAAACGAAAGTGCGGGCGCTCAGCCGGTCGGAGAGACAGAATGCGCAAGCTGGGGAC
* ** * * * *
18564821 TGGCCCGGTCCCTCTCTACGTGCTGCCGGTCCCACTACCACAACCCTCAGTCCGGTTGGGGCTTA
131 TAGCCCGAACCCTCCCTACGTGCTACCGATCCCACTACCACAACCCTCAGTCCGGTTGGAGCTTA
* * **
18564886 GACATGGAATGAACTCCCTATGCCTAAGACAACCCATGAAATGGGCATGCAGGCTTTCAGCCAGC
196 GACATAGAATGAACTCCCTATGCCTAAGACAACCCATGAAATGAGCATGCAGGCGCTCAGCCAGC
* * *
18564951 CGGAGAGGTAGAATGCGTAAACCAAGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCCTGCTA
261 CGGAGAGGCAGAATGCATAAACCAAGGATCAGCCCGATCCCTCCTGCGTGCTGTCGATCCTGCTA
18565016 TCGCAACCGTCAGTCCGA
326 TCGCAACCGTCAGTCCGA
* *
18565034 TCCGATCTTAGACTTGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * *
18565099 CAACCCACGAAACGAAAGTGCGGGTGCTCAGTCGGTCGGAGAGATAGAATGCGCAAGCTGGGGAA
66 CAACCCACGAAACGAAAGTGCGGGCGCTCAGCCGGTCGGAGAGACAGAATGCGCAAGCTGGGG-A
* * ** * *** ** * *
18565164 CTAGCCC-AACCC-CCCTGCGTGCTATCGATCCTGCTGCTGTAACCCTTGGTCTGGTCT-GATCT
130 CTAGCCCGAACCCTCCCTACGTGCTACCGATCCCACTACCACAACCCTCAGTCCGGT-TGGAGCT
** * * *
18565226 TAGACATAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAGCC-
194 TAGACATAGAATGAACTCCCTATGCCTAAGACAACCCATGAAATGAGCATGCAGGCGCTCAGCCA
* * * * *
18565290 GACCGGAGAGGCATAATGCATAAGCCGAGGATC-GACCCGATCCTCTTCTGCTTGCTGTCGATCC
259 G-CCGGAGAGGCAGAATGCATAAACCAAGGATCAG-CCCGATCC-CTCCTGCGTGCTGTCGATCC
18565354 CGTTGCCACA
Statistics
Matches: 263, Mismatches: 52, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
341 2 0.01
342 120 0.46
343 135 0.51
344 6 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (343 bp):
TCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAAAGTGCGGGCGCTCAGCCGGTCGGAGAGACAGAATGCGCAAGCTGGGGAC
TAGCCCGAACCCTCCCTACGTGCTACCGATCCCACTACCACAACCCTCAGTCCGGTTGGAGCTTA
GACATAGAATGAACTCCCTATGCCTAAGACAACCCATGAAATGAGCATGCAGGCGCTCAGCCAGC
CGGAGAGGCAGAATGCATAAACCAAGGATCAGCCCGATCCCTCCTGCGTGCTGTCGATCCTGCTA
TCGCAACCGTCAGTCCGA
Found at i:18565567 original size:158 final size:156
Alignment explanation
Indices: 18565066--18565567 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 156
18565056 ACTCCGTATG
* **
18565066 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAAAGTGCGGGTGCTCAG
1 CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGCA-TGCGGGTGCTCAG
* * * * * *
18565130 TCGGTCGGAGAGATAGAATGCGCAAGCTGGGGAACTAGCCCAA-CCCCCCTGCGTGCTATCGATC
65 TCGGTCGGAGAGGTAGAATGCACAAGC-CGGG-ATTGGCCCAATCCCCCTTGCGTGCTATCGATC
* * * * *
18565194 CTGCTGCTGTAACCCTTGGTCTGGTCTGAT
128 CTGCTGC-GCAACCCTCGGTCCGATCCGAT
* * * * * * *
18565224 CTTAGACATA-GAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAG
1 CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG-GCATGCGGGTGCTCAG
* ** * * * * * * * * * *
18565288 CCGACCGGAGAGGCATAATGCATAAGCCGAGGATCGACCCGATCCTCTTCTGCTTGCTGTCGATC
65 TCGGTCGGAGAGGTAGAATGCACAAGCCG-GGATTGGCCCAATCCCCCT-TGCGTGCTATCGATC
* * * * **
18565353 CCGTTGCCACAACCCTCGGTCCGA-CTGGGG
128 CTGCTG-CGCAACCCTCGGTCCGATC-CGAT
* * * * *
18565383 CTTACACGT-GGAATGAACTCCCTATGCCTAAGCCAACCCATTAAACAGGCATGCGGGTGCTTAG
1 CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GGCATGCGGGTGCTCAG
18565447 TCGGTCGGAGAGGTAGAATGCACAAGCCAGGGATTGGCCCAATCCCCCTTGCGTGCTA-CTGATC
65 TCGGTCGGAGAGGTAGAATGCACAAGCC-GGGATTGGCCCAATCCCCCTTGCGTGCTATC-GATC
*
18565511 CTGCTGTCGCAACCCTCGGTCCGATCCAAT
128 CTGCTG-CGCAACCCTCGGTCCGATCCGAT
18565541 CTTAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACATAGGAATGAACTCCGTATGC
18565568 TTAGAATGGG
Statistics
Matches: 258, Mismatches: 73, Indels: 26
0.72 0.20 0.07
Matches are distributed among these distances:
157 8 0.03
158 131 0.51
159 116 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGCATGCGGGTGCTCAGT
CGGTCGGAGAGGTAGAATGCACAAGCCGGGATTGGCCCAATCCCCCTTGCGTGCTATCGATCCTG
CTGCGCAACCCTCGGTCCGATCCGAT
Found at i:18566853 original size:26 final size:26
Alignment explanation
Indices: 18566815--18566867 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18566805 CTGGTCCGAT
*
18566815 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18566841 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18566867 C
1 C
18566868 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18567233 original size:158 final size:158
Alignment explanation
Indices: 18566840--18567238 Score: 425
Period size: 158 Copynumber: 2.5 Consensus size: 158
18566830 AACTTCGTAT
* * * *
18566840 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACAAAACAAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
**
18566905 CCGGTAGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCCTGCGTGCTATCAATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCCTGCGTGCTATCAATCC
* * *
18566970 TACTGCCGCAACCCTCGGTCCAGTCCGA
131 CACTGCCACAACCCTCGGTCCAGACCGA
* * * *
18566998 TCTT--ACATTGGGAATGAACAT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTT
1 GCTTAGACA-T-GGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * ** *
18567060 GAACTGACCGGAGAGGCATAATGCGCAAGTCGGGGAT--GACTCGGTCCCCCTCTGTTTGCTGTC
63 CAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCT-GGTCCCCC-CTGCGTGCTATC
** * *
18567123 GGTCCCGCTGCCACAACCCTCGGTCC-GACTGA
126 AATCCCACTGCCACAACCCTCGGTCCAGACCGA
* * *
18567155 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GACGTGCGGGTGCTC
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTC
*
18567219 AACCGGCCGAAGAGGCAGAA
64 AACCGGCCGGAGAGGCAGAA
18567239 AGGCATGCCG
Statistics
Matches: 194, Mismatches: 37, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
156 6 0.03
157 15 0.08
158 168 0.87
159 2 0.01
160 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCCTGCGTGCTATCAATCC
CACTGCCACAACCCTCGGTCCAGACCGA
Found at i:18567705 original size:26 final size:26
Alignment explanation
Indices: 18567669--18567721 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18567659 CTGGTCCTAT
18567669 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18567695 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18567721 C
1 C
18567722 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18567839 original size:184 final size:184
Alignment explanation
Indices: 18567510--18567879 Score: 440
Period size: 184 Copynumber: 2.0 Consensus size: 184
18567500 TCCGACTGGG
* * *
18567510 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
** ** * * *
18567575 TTGGTTGAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCC
66 CCGGCCGAAAAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCAATCC
* *
18567640 TACTGTCATAACCCTCAGTCTGGTCCT-ATCTTAGACTGGGAATGAACTCCATAT
131 TACTGTCACAACCCTCAGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCATAT
* * * **
18567694 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * * * * *
18567758 ACCGGCCGGAGAGGTAGAATGCGCAAG-CTGGGGATCAGCCCGATCCCCTCTGTGTGCTATCGAT
65 ACCGGCCGAAAAGGCAGAATGCGCAAGTC-GGGGATCAGCCCGATCCCCCCTGCGTGCTACCAAT
* * * *
18567822 CCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
129 CCTACTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
18567878 GC
1 GC
18567880 ATAAGTCAAC
Statistics
Matches: 155, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 4 0.03
184 151 0.97
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
CCGGCCGAAAAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCAATCC
TACTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:18567972 original size:343 final size:343
Alignment explanation
Indices: 18567008--18567974 Score: 781
Period size: 343 Copynumber: 2.8 Consensus size: 343
18566998 TCTTACATTG
** * * * * * * * *
18567008 GGAATGAACAT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGAACTGACCGGA
1 GGAATGAAC-TCCGTATGCAAAAGCCAACCCACAAAACGAGCGTCCGGGCGCTCAACCGGCCGAA
* * * * * * * * * * *
18567072 GAGGCATAATGCGCAAGTCGGGGAT-GACTCGGTCCCCCTCTGTTTGCTGTCGGTCCCGCTGCCA
65 GAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCTTCTGTGTGCTGCCAGTCCCACTGCCA
*
18567136 CAACCCTCGGTCCGACT-GAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
130 CAACCCTCGGTCCGACTGGA-GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGA
** * * ** * * * * * * * * * *
18567200 AA-TGGACGTGCGGGTGCTCAACCGGCCGAAGAGGCAGAAAG-GCATGCCGAGGATCGACCTGTT
194 AACAAG-CATACGGGCACTCAGCCGACCGAAAAGGCAGAATGCGCAAGTCAAGGATCGGCCCGGT
* * * * * *
18567263 CCCCCCTGCTTGCTGCTAATCCTGTTACTGGTCTTGCTGCCGCAACCCTCGGT-TCAGT-TTGAT
258 CCCCCCTGCGTGCTGCCAATCC---TACT-GTC---AT-----AACCCTCAGTCT-GGTCCT-AT
* *
18567326 CTTAGATTGGGAATGAACTCCGTATGCTTAGACAT
309 CTTAGACTGGGAATGAACTCCATATGCTTAGACAT
* * * * *
18567361 GGAATGAACTCCGTATGCAAAAGTCAACCCACAAAACGAGCGTCCGGGCGCTGAGCTGGCTGAAG
1 GGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCGTCCGGGCGCTCAACCGGCCGAAG
* *
18567426 AGGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCTTCTGTGTGCTGCCAGTCCCACTGCCAC
66 AGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCTTCTGTGTGCTGCCAGTCCCACTGCCAC
* * * *
18567491 AACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
131 AACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAA
** * ** *** **
18567556 CGGGCATGCGGGCACTCAGTTGGTTGAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCC
196 CAAGCATACGGGCACTCAGCCGACCGAAAAGGCAGAATGCGCAAGTCAAGGATCGGCCCGGTCCC
18567621 CCCTGCGTGCTGCCAATCCTACTGTCATAACCCTCAGTCTGGTCCTATCTTAGACTGGGAATGAA
261 CCCTGCGTGCTGCCAATCCTACTGTCATAACCCTCAGTCTGGTCCTATCTTAGACTGGGAATGAA
18567686 CTCCATATGCTTAGAC-T
326 CTCCATATGCTTAGACAT
* ** * * * *
18567703 GGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGGA
1 -GGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCGTCCGGGCGCTCAACCGGCCGAA
* * * * ** ** *
18567768 GAGGTAGAATGCGCAAGCTGGGGATC-AGCCCGATCCCC-TCTGTGTGCTATC-GATCCTGCTGT
65 GAGGCAGAATGCACAAGCCGAGGATCGA-CCCGATCCCCTTCTGTGTGCTGCCAG-TCCCACTGC
* * * * *
18567830 CGCAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCA
128 CACAACCCTCGGTCC-GACTGGAGCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCA
** * * * * *
18567893 CGAAACAAGTGTACGGGCATTGAGCCGACCGAAGAGGCATAATGCGCAAGTCAAGGATTGGCCCG
191 CGAAACAAGCATACGGGCACTCAGCCGACCGAAAAGGCAGAATGCGCAAGTCAAGGATCGGCCCG
18567958 GTCCCCCTCTGCGTGCT
256 GTCCCCC-CTGCGTGCT
18567975 ACCGATCCCG
Statistics
Matches: 506, Mismatches: 95, Indels: 36
0.79 0.15 0.06
Matches are distributed among these distances:
341 2 0.00
342 122 0.24
343 138 0.27
344 2 0.00
348 1 0.00
351 3 0.01
352 5 0.01
353 75 0.15
354 119 0.24
355 39 0.08
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
GGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCGTCCGGGCGCTCAACCGGCCGAAG
AGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCTTCTGTGTGCTGCCAGTCCCACTGCCAC
AACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAA
CAAGCATACGGGCACTCAGCCGACCGAAAAGGCAGAATGCGCAAGTCAAGGATCGGCCCGGTCCC
CCCTGCGTGCTGCCAATCCTACTGTCATAACCCTCAGTCTGGTCCTATCTTAGACTGGGAATGAA
CTCCATATGCTTAGACAT
Found at i:18569056 original size:26 final size:26
Alignment explanation
Indices: 18569020--18569072 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18569010 CTGGTCCAAT
18569020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18569046 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18569072 C
1 C
18569073 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18569771 original size:159 final size:157
Alignment explanation
Indices: 18569581--18569879 Score: 395
Period size: 159 Copynumber: 1.9 Consensus size: 157
18569571 TCTTAGACTG
* * * *
18569581 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTACGGGCGTTGAGCCGACCGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAG-GCGTACGGGCGCTCAGCCGACCGGA
* * * *
18569645 GAGGAATAATGCGTAAGCCGAGGATTGGCCC-GATCCCCCTCTACGTGCTGCCGGTCCTGCTACC
65 GAGGAAGAATGCGTAAGCCGAGGATCGACCCAG-T-CCCCTCTACGTGCTGCCGATCCTGCTACC
18569709 ACAACCCTCGGTCCGACTGGGGCTTTGACAT
128 ACAA-CCTCGGTCCGACTGGGGCTTTGACAT
* **
18569740 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTACGGGTGCTCAGCCGGTCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTACGGGCGCTCAGCCGACCGGAG
* ** * * *
18569805 AGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCTGTCTACGTGCTGTCGATCCTGCTGCCGCA
66 AGGAAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCTCTACGTGCTGCCGATCCTGCTACCACA
18569870 ACCTCGGTCC
131 ACCTCGGTCC
18569880 AATCTGATCT
Statistics
Matches: 121, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
157 9 0.07
158 27 0.22
159 83 0.69
160 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (157 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTACGGGCGCTCAGCCGACCGGAG
AGGAAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCTCTACGTGCTGCCGATCCTGCTACCACA
ACCTCGGTCCGACTGGGGCTTTGACAT
Found at i:18569939 original size:26 final size:26
Alignment explanation
Indices: 18569888--18569940 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18569878 CCAATCTGAT
* *
18569888 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18569914 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18569940 C
1 C
18569941 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18570984 original size:26 final size:26
Alignment explanation
Indices: 18570948--18571000 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18570938 TTGGTTTGAT
*
18570948 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18570974 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18571000 C
1 C
18571001 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18571878 original size:158 final size:157
Alignment explanation
Indices: 18571355--18571896 Score: 484
Period size: 160 Copynumber: 3.4 Consensus size: 157
18571345 ACTCCATATG
* * * * *
18571355 CTTAGACATGGATTGAACTCGGTATGCCTAAGCCAACCCACGAAACGACCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18571420 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAATCCCTCCCTGCATGCTGTCGATCC
66 CAGT-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCC-CCTTGCGTGCTGTCGATCC
* ** * *
18571485 TAGTGTCGCAACCCTCGGTCCGATCTGAT
129 TACTACCGCAACCCTCGATCCGATCCGAT
* * * * * *
18571514 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *
18571578 -CATGATCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCT-GATCTCCCTTTGCGTGCTGCCG
65 CCA-G-TGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAG-TC-CCCCTTGCGTGCTGTCG
* ** ** * * **
18571641 GTCCCGCTACCATAACCCTCAATCCGA-CTGGGG
125 ATCCTACTACCGCAACCCTCGATCCGATC-CGAT
* * * * * *
18571674 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACAAAACGGGTGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * *
18571739 CGGCTGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCTTAGTCCCCCTTACGTGCTGTCGATCCT
66 CAG-TGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCTTGCGTGCTGTCGATCCT
*
18571804 ACTACCGCAACCCTCGATCCGATCCAAT
130 ACTACCGCAACCCTCGATCCGATCCGAT
* ** * *
18571832 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGT-CAGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
18571895 CC
65 CC
18571897 GACCAGAGAG
Statistics
Matches: 297, Mismatches: 74, Indels: 26
0.75 0.19 0.07
Matches are distributed among these distances:
157 11 0.04
158 82 0.28
159 85 0.29
160 115 0.39
161 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CAGTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCTTGCGTGCTGTCGATCCTA
CTACCGCAACCCTCGATCCGATCCGAT
Found at i:18572577 original size:26 final size:26
Alignment explanation
Indices: 18572538--18572587 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
18572528 GGCTTACAAT
* *
18572538 CTTAGACTGAGAATTAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18572564 CTTAGACATG-GAATGAACTCCGTA
1 CTTAGAC-TGAGAATGAACTCCGTA
18572588 AGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18573076 original size:26 final size:26
Alignment explanation
Indices: 18573040--18573092 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18573030 CTGGTCTGAT
*
18573040 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18573066 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18573092 C
1 C
18573093 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18573393 original size:171 final size:171
Alignment explanation
Indices: 18573088--18573399 Score: 408
Period size: 171 Copynumber: 1.8 Consensus size: 171
18573078 ATGAACTCCG
* ** *
18573088 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGACCGAAAAGGCATAATGCGC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGAAAAGGCAAAATGCGC
* * ** * *
18573153 AAGCCGGGGATTAGCCCGATCCCCCTCTGCGTGCTATCGATCCTGTTGCCGGTCCTACTGCCACA
66 AAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCTACTGCCGGTCCCACTACCACA
18573218 ACCCTCGGTCTAGTTAGGGCTTAGACATGGAATGAATGCCA
131 ACCCTCGGTCTAGTTAGGGCTTAGACATGGAATGAATGCCA
* * * * * *
18573259 TATGCCTAAGCCAATCCATGGAACGAGTGTGCGGGCACTCAACCGGCCGGAGAGGCAAAATGCGC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGAAAAGGCAAAATGCGC
* * * ** * * *
18573324 AAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTTGATCCTACTGTTGGTCCCGCTATCGCA
66 AAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCTACTGCCGGTCCCACTACCACA
18573389 ACCCTCGGTCT
131 ACCCTCGGTCT
18573400 GGTCTGATCT
Statistics
Matches: 117, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
171 117 1.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (171 bp):
TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGAAAAGGCAAAATGCGC
AAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCTACTGCCGGTCCCACTACCACA
ACCCTCGGTCTAGTTAGGGCTTAGACATGGAATGAATGCCA
Found at i:18573437 original size:26 final size:26
Alignment explanation
Indices: 18573408--18573460 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18573398 CTGGTCTGAT
18573408 CTTAGAC-TGCCAATGAACTCTGTATG
1 CTTAGACATG-CAATGAACTCTGTATG
* *
18573434 CTTAGACATGGAATTAACTCTGTATG
1 CTTAGACATGCAATGAACTCTGTATG
18573460 C
1 C
18573461 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
CTTAGACATGCAATGAACTCTGTATG
Found at i:18573827 original size:159 final size:158
Alignment explanation
Indices: 18573433--18573835 Score: 407
Period size: 159 Copynumber: 2.5 Consensus size: 158
18573423 AACTCTGTAT
* * * * *
18573433 GCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGCGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * *
18573498 CCGACCGGAGAGGCAGAATGTGCAAGTCGGGGACCGACCCGATCCCCCCTACGTGCTGTCAATCC
66 CCGACCAGAGAGGCAGAATGCACAAGTCGGAGACCGACCCGATCCCCCCTACGTGCTGCCAATCC
* *
18573563 TACTATCACAACCCTCGGTCCAATCCGA
131 CACTACCACAACCCTCGGTCCAATCCGA
* ** * * * * *
18573591 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAATCAACTCACGAAACGAGCGTGCCGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * ** * * **
18573655 GCCGGCCTA-AGAGGCATAATGCACAAGTCGGAGAGTGACCCGATCCCCCTCTGCGTGTTGCCGG
65 GCCGACC-AGAGAGGCAGAATGCACAAGTCGGAGACCGACCCGATCCCCC-CTACGTGCTGCCAA
* * *** * *
18573719 TCCCACTGCCACAGCCCTCGGT-CTGGCTGGG
128 TCCCACTACCACAACCCTCGGTCCAATC-CGA
*
18573750 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
18573815 TCGACCAGAGAGGCAGGATGC
66 CCGACCAGAGAGGCAGAATGC
18573836 GTAAGTCAAG
Statistics
Matches: 191, Mismatches: 48, Indels: 11
0.76 0.19 0.04
Matches are distributed among these distances:
157 1 0.01
158 92 0.48
159 97 0.51
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCACAAGTCGGAGACCGACCCGATCCCCCCTACGTGCTGCCAATCC
CACTACCACAACCCTCGGTCCAATCCGA
Found at i:18574934 original size:159 final size:158
Alignment explanation
Indices: 18574494--18574923 Score: 454
Period size: 159 Copynumber: 2.7 Consensus size: 158
18574484 AAGCATTCTG
* * * * * *
18574494 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAGCAGGCCGGAGAGGTAGATTGCGC
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAGAATGCGC
* * * * *
18574559 AAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGTTGTCGAT-CCTACTACCGCAACCCTCGGTTTG
66 AAGCCGGGGATCGGCCCGATCCCCC-TGTGTGCTGTCGATCCCTACTGCCGCAACCCTCGGTCTG
* * * *
18574623 CTCTAATCTTAGATTGGGAATGAACTCCG
130 CTCGAAGCTTAGAATGGGAATGAACTCCC
* * * *
18574652 TATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGTTGAGCCGGTCGAAGAGGCATAATGCGC
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAGAATGCGC
* * * * * * * *
18574717 AAGCCGAGGATTGGCCCGATTCCCCTTTACGTGCTGCCGGTCCC-GCTGCCACAACCCTCGGTCT
66 AAGCCGGGGATCGGCCCGATCCCCCTGT--GTGCTGTCGATCCCTACTGCCGCAACCCTCGGTCT
** *
18574781 GACT-GGGGCTTCGACAT-GGAATGAACTCCC
129 G-CTCGAAGCTTAGA-ATGGGAATGAACTCCC
* * * *
18574811 TATGCCTAAGCCAACCCACAAAATGGGCGTGTGGGCGTTCAGCCGGTCGGAGAGGCAGAATGCGT
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAGAATGCGC
* *
18574876 AAGCCGGGGATCGACCCAATCACCCCTGTGTGCTGTCGATCCCTACTG
66 AAGCCGGGGATCGGCCCGATC-CCCCTGTGTGCTGTCGATCCCTACTG
18574924 TCGGAGCCCT
Statistics
Matches: 218, Mismatches: 47, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 88 0.40
159 118 0.54
160 11 0.05
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAGAATGCGC
AAGCCGGGGATCGGCCCGATCCCCCTGTGTGCTGTCGATCCCTACTGCCGCAACCCTCGGTCTGC
TCGAAGCTTAGAATGGGAATGAACTCCC
Found at i:18575889 original size:26 final size:26
Alignment explanation
Indices: 18575838--18575890 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18575828 CCGGTCTGAT
* *
18575838 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
18575864 CTTAGACATG-GAATGAACTCCATATG
1 CTTAGAC-TGAGAATGAACTCCATATG
18575890 C
1 C
18575891 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18576235 original size:26 final size:26
Alignment explanation
Indices: 18576206--18576258 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18576196 CCGATCTAAT
18576206 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18576232 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18576258 C
1 C
18576259 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18576308 original size:184 final size:184
Alignment explanation
Indices: 18576049--18576416 Score: 513
Period size: 184 Copynumber: 2.0 Consensus size: 184
18576039 CAGCTGGGGT
* * * **
18576049 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCGTACAGGCGCTCAACC
* * * *
18576114 GATCGGAGAGGCAGAATGCGTAAGTCAGGGATC-AGCCCGGTCCCCCCTGCGTGCTACCGATCCT
66 AATCGGAGAGGCAGAATGCATAAGCCAGGGATCGA-CCCGGTCCCCCCTACGTGCTACCGATCCT
* * *
18576178 ACTGTCGCACCCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGC
130 ACTGCCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
*
18576233 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTACAGGCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCGTACAGGCGCTCAACC
* * * *** *
18576298 AATTGGAGAGGCAGAATGCATAAGCCGGGGATCGACCTGGTCCCCCCTACGTGCTGTTGATCCTG
66 AATCGGAGAGGCAGAATGCATAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCCTA
* * *
18576363 CTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
131 CTGCCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
18576417 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 23, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
184 159 0.99
185 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCGTACAGGCGCTCAACC
AATCGGAGAGGCAGAATGCATAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCCTA
CTGCCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:18576586 original size:159 final size:158
Alignment explanation
Indices: 18576231--18576733 Score: 476
Period size: 158 Copynumber: 3.2 Consensus size: 158
18576221 AACTCCGTAT
* *
18576231 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAA
* ** * * * **
18576296 CCAATTGGAGAGGCAGAATGCAT-AAGCCGGGGATCGACCTGGTCCCCCCTACGTGCTGTTGATC
66 CCGACCGGAGAGGCAGAATGC-TCAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGCAGATC
* * *
18576360 CTGCTGCCGCAACCCTCAGTCTGGTCCGA
130 CTACTGCCACAACCCTCAGTCCGGTCCGA
* * * *
18576389 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * * * * *
18576453 ACCGGCCAGAGAGGCATAATGCTCAAGTCGGGGACCGGCCCGATCCCCCTCTGCGTGCTGCCAG-
65 ACCGACCGGAGAGGCAGAATGCTCAAGCCGGGGACCGACCCGATCCCCC-CTACGTGCTG-CAGA
* * **
18576517 T-CTCACTGCCACATCCCTCGGTCCGGTTGGA
128 TCCT-ACTGCCACAACCCTCAGTCCGGTCCGA
** * * * *
18576548 GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAA
* ** * * * * * *
18576613 CCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCTGGTCCCTCCTGCGTGCTGCCGATCC
66 CCGACCGGAGAGGCAGAATGCTCAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGCAGATCC
* * * *
18576678 TACTGTCATAACCCTCAGTCTGGTCCTA
131 TACTGCCACAACCCTCAGTCCGGTCCGA
* * *
18576706 TCTTAGA-TTGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18576734 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 146 0.53
159 121 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAA
CCGACCGGAGAGGCAGAATGCTCAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGCAGATCC
TACTGCCACAACCCTCAGTCCGGTCCGA
Found at i:18576743 original size:26 final size:26
Alignment explanation
Indices: 18576707--18576759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18576697 CTGGTCCTAT
*
18576707 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18576733 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18576759 C
1 C
18576760 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18578643 original size:26 final size:26
Alignment explanation
Indices: 18578614--18578666 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18578604 CTGGTCTAAT
18578614 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18578640 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18578666 C
1 C
18578667 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18578847 original size:26 final size:26
Alignment explanation
Indices: 18578809--18578861 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18578799 CTGGTCCGAT
*
18578809 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
18578835 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
18578861 C
1 C
18578862 ATAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18580219 original size:26 final size:26
Alignment explanation
Indices: 18580190--18580239 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
18580180 CGATCTGATC
* *
18580190 TTAGGCTAGGAATGAACTCTGTATAA
1 TTAGACTAGGAATGAACTCCGTATAA
* *
18580216 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTAGGAATGAACTCCGTAT
18580240 GCCTAAGTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATAA
Found at i:18580598 original size:184 final size:184
Alignment explanation
Indices: 18580398--18580767 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 184
18580388 TCCGGTTGGG
* * * *
18580398 GCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAGACGAGCGTGCGGGTGCTCAA
1 GCTTAGAAATGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
* * * * *
18580463 TCGGCTGGAGAGGCAGAATGTGCAAGTCAGGGATCGACCCGGTCCCCCCTGTATGTTACCTATCC
66 CCGGCTGGAGAGGCAGAATGGGCAAGTCAGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCC
* *
18580528 TGCTGCCGCAACCCTC-AGTCC-AGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTACCGCAACCCTCGA-TCCGA-TCTGATCTTAGACTGGGAATGAACTCAGTAT
* * * *
18580582 GCTTAGAAATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGTGTGCAGGTGCTCAG
1 GCTTAGAAATGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
* ** * * * **
18580647 CCGGTTGGAGAGGCAGAATGGGCAAGTTGGGGATCGGCCCGTTCCCCCCTGCGTGCTGTCGATCC
66 CCGGCTGGAGAGGCAGAATGGGCAAGTCAGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCC
18580712 TGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCAGTAT
131 TGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCAGTAT
18580766 GC
1 GC
18580768 CAAAGTCAAC
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
184 159 0.99
185 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (184 bp):
GCTTAGAAATGGAATGAAATCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
CCGGCTGGAGAGGCAGAATGGGCAAGTCAGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCC
TGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCAGTAT
Found at i:18580928 original size:868 final size:869
Alignment explanation
Indices: 18578774--18582018 Score: 3263
Period size: 868 Copynumber: 3.7 Consensus size: 869
18578764 CGATCCTTGT
** * * *
18578774 TGGTCCTGCTGCTGCAATCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
1 TGGTCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * ** * *
18578839 GACATGGAATAAACTCCGTATGCATAAGCCAACCCACGAAATGAGTATGCGGGTGCTCAGTCGGT
66 GACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGT
* * * * ** * *
18578904 CGGAGAGGTAGAATGCACAAGCCG-GGTATCGGCTTGATCCCCTCTTACATGCTATCGATCCTGT
131 CAGAGAGGCAGAATGCGCAAGCCGAGG-ACCGGCCCGATCCCC-C-TGCATGCTATCGATCCTGC
** * * * *
18578968 TGTCGCAACCCTTGGTCC-AGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACC
193 TACCGCAACCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACC
* * * ** * * * * *
18579032 AATGAAATAAGCGTTCGGGTGCTGAGCCGACTGGAGAGACATAATACGCAAG-CTGAGGATCGAC
257 CACGAAACAAGCGTTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAG-GGATCGGC
* *** * *** * * * *
18579096 TCGGTCCCCCTCTGTGTGTTGTTGGTCCCGCTGCCACAACCCTCGGT-CTGGTAGGGGCTTAGAC
321 TCGATCCCCCTCTACATGCTACCGATCCCGTTGCCACAACCCTCGGTCCAGCTA-GGGCTTAGAC
* * * * ** * * * *
18579160 ATAGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGGGCCTACGGGCGCTCAGTCGGCCGG
385 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACCTGTGGGTGCTCAGCCAGTCGG
* * ** *
18579225 AGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTACTATCGATCCTGCTACCG
450 AGAGGCAGAATGCGCAAGCCGGGGATTAGCCCGATCCCCCCTACGTACTACCGATCCTGCTACCG
* *
18579290 CAACCCTCGATCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAA
515 CAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
* * * * *
18579354 CT-CATATGCCTAAGTCAACCCATGAAACGAGC-GTGCGGGTGCTCAACCGGTCAGAGAGGCCGA
579 CTCCGTATGCCTAAGTCAACCCATGAAACGA-CTGTGCGGGCGCTCAGCTGGTCAGAGAGGTCGA
* * * * * *
18579417 CCGGAGAGGTATAATGTGCAAGTCGAGGATCAACTCGGTGCCTCTCTGCGTGCT-GCTGGT-CTC
643 TCGAAGAGGTATAATGTGCAAGTCGAGGATCAGCTCGGTCCCTCTCTGCGTGCTATC-GATCCT-
* * *
18579480 GCTACCGGTCCTGCTGCCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
706 GCTACCGGTCCTGCTGCCACAACCC-TCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * * * * * *
18579545 GCCTAGGCCAACCCATGAAACAAGAGTACGGGTGATCAGTCGGTCGGAGAGGTAGAATGCGTAAG
770 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGGTCGGAGAGGTAGAATGCGCAAG
* **
18579610 TCGAGGATC-AGCCTGGTGCCCCCTACGTGCTGCCAATCCTACTAC
835 TCGAGGATCGA-CCCGGT-CCCCC--C-TG-T----ATGTTACT-C
* * * * *
18579655 TGGTCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTATACTGGGAATGAGCTCTATATGCTTA
1 TGGTCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * *
18579720 GACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCTGGT
66 GACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGT
* * * * * *
18579785 CACAGAGGCTGAATGCGTAAGCCGAAGACCGACCCGATCCCCCTGCATGCTATCGATCCTACTAC
131 CAGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCTGCATGCTATCGATCCTGCTAC
* * * * * * *
18579850 TGCAACCCTCGGTTCGATCCGATCTTAGATTGGGAATGAACTCAGTATGCCGAAGTCAACCCACA
196 CGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACG
** * * * *
18579915 AAATGAGCGTTCGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGT
261 AAACAAGCGTTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGAT
* ** * *
18579980 -CCCCTCTGCATGCTGTCGATCCTGTTGCCACAACCCTCGGTCC-GACTAGGGCTTAGACTTGGA
326 CCCCCTCTACATGCTACCGATCCCGTTGCCACAACCCTCGGTCCAG-CTAGGGCTTAGACATGGA
* * * * *
18580043 ATAAACTCCCAATGCCTAAGCCAACCCATGAAACGGACGTGTAGGTGCTCAGCCAGTCGGAGAGG
390 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACCTGTGGGTGCTCAGCCAGTCGGAGAGG
* * * * * * * * * **
18580108 CAGAATGCGGAAGTCGGGGATTAGCTCGGTCACCCCTGCGTGCTGCCGATCCTACTGTCGCAACC
455 CAGAATGCGCAAGCCGGGGATTAGCCCGATCCCCCCTACGTACTACCGATCCTGCTACCGCAACC
* * * * * **
18580173 CTCGGTCCGATCTGATCTTAGGCTAGGAATGAACTCTGTATAATTAGACTGGGGATGAACTCCGT
520 CTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
* * * **
18580238 ATGCCTAAGTCAACCCATGAAACGACTGTACGAGCGCTCAGCTAGTTGGAGAGGTCGATCGAAGA
585 ATGCCTAAGTCAACCCATGAAACGACTGTGCGGGCGCTCAGCTGGTCAGAGAGGTCGATCGAAGA
* * * * * *
18580303 GGCATAATGTGCAAGCCGAGGATCAGCTCGATCCCCCTCTGCATGCTATCGATCCTGTTACCGGT
650 GGTATAATGTGCAAGTCGAGGATCAGCTCGGTCCCTCTCTGCGTGCTATCGATCCTGCTACCGGT
* * * *
18580368 CCTGCTACCATAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAAATCCGTATGCCTAAGCC
715 CCTGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * *
18580433 AACCCACGAGACGAGCGTGCGGGTGCTCAATCGG-CTGGAGAGGCAGAATGTGCAAGTC-AGGGA
779 AACCCACGAAACGAGCGTGCGGGTGCTCAATCGGTC-GGAGAGGTAGAATGCGCAAGTCGA-GGA
18580496 TCGACCCGGTCCCCCCTGTATGTTAC-C
842 TCGACCCGGTCCCCCCTGTATGTTACTC
* * * *
18580523 T-ATCCTGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
1 TGGTCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * * *
18580587 GAAATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGTGTGCAGGTGCTCAGCCGGT
66 GACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGT
** * ** * * * * *
18580652 TGGAGAGGCAGAATGGGCAAGTTGGGGATCGGCCCGTTCCCCCCTGCGTGCTGTCGATCCTGCTA
131 CAGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGAT-CCCCCTGCATGCTATCGATCCTGCTA
*
18580717 CCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCAGTATGCCAAAGTCAACCCAC
195 CCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCAC
* * * *
18580782 GAAACGAGCGTTCAGGCACTGAGCTGACCGGAGAGGCATAATGTGCAAGCCAGGGATCGGCTCGA
260 GAAACAAGCGTTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGA
* * *
18580847 TCCCCTTCTACATGAC-ACCGATCCCATTGCCACAACCCTTGGTCCAGCTAGGGCTTAGACATGG
325 TCCCCCTCTACATG-CTACCGATCCCGTTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGG
* *
18580911 AATG-ACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCAGCCAGTTGGAGAG
389 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACCTGTGGGTGCTCAGCCAGTCGGAGAG
* * ** *
18580975 GCAGAATGCGCAAGCCGGGGATAAGCCC-AGTCCCCCCTACGTACTATCGATCCTGCTGTCGTAA
454 GCAGAATGCGCAAGCCGGGGATTAGCCCGA-TCCCCCCTACGTACTACCGATCCTGCTACCGCAA
* * * *
18581039 ACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCC
518 CCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
* * * * * * *
18581104 GTATGCCTAAGTCAACCCATAAAATGAGTGTGCGGGCACTCAGTTGGCCAGAGAAGTC-AGTCGG
583 GTATGCCTAAGTCAACCCATGAAACGACTGTGCGGGCGCTCAGCTGGTCAGAGAGGTCGA-TC-G
* * *
18581168 AA-AGGTATAATGTGTAAGTC-AGGGATCAGCCCGGTCCCTCTCTACGTGCTATCGATCCTGCTA
646 AAGAGGTATAATGTGCAAGTCGA-GGATCAGCTCGGTCCCTCTCTGCGTGCTATCGATCCTGCTA
* * *
18581231 CCGGTTCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGTCATGGAATGAACTCCGTATGCCT
710 CCGGTCCTGCTGCCACAACCCTCG-TCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* * * *
18581296 AAGCCAACCCACAAAACGAGCGTGCGGGCGCT-AAGTCGGTCGGAGAGGTAGAATACGCAAGCCG
774 AAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA-TCGGTCGGAGAGGTAGAATGCGCAAGTCG
* * * * * *
18581360 AGAATCGGCTCGATTGCCCCCTGCATGCTGTCAATCCTGCTGC
838 AGGATCGACCCG-GTCCCCCCTGTATG-T-T--A-----CT-C
* * * *
18581403 TGGTCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTCCGTATGCTTA
1 TGGTCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * * *
18581468 GACATTGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGGT
66 GACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGT
* * * ** * * ** * *
18581533 TAGAGAGGTAGAATGCGTAAGCCGAGGACCGTTCCGTTCCTCCTGTGTGCTGTCGATCTTGCTAC
131 CAGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCTGCATGCTATCGATCCTGCTAC
* * * *
18581598 CGCAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAATCCAC
196 CGCAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCAC
** * ** *
18581662 GAAACAAGCGTGT-GGGTGCTGAACCGGTCGGAGAGGCATAATGCGCAAGCGA-GGATCGGC-CT
260 GAAACAAGCGT-TCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCTC-
* * ** * * * * *
18581724 GATCCCCCTCTACGTGCTACCGGTAGCTTTACCACAACCCTCAGTTCAGCTGGGGCTTAGACATG
323 GATCCCCCTCTACATGCTACCGATCCCGTTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATG
* * * * * *** * * * *
18581789 GAATGAACTCCCTATGCCTAAGCGAACGCATGAAATAGG-CCTGCGGGCATTCAGTCGGTTGGAA
388 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-CGGACCTGTGGGTGCTCAGCCAGTCGGAG
* * ** *
18581853 AGGCAGAATGCGCAAGCCGGGGA-TAGGCTCGATCCCCCCTGCGTGTTGCCGATCCTGCTACCGC
452 AGGCAGAATGCGCAAGCCGGGGATTA-GCCCGATCCCCCCTACGTACTACCGATCCTGCTACCGC
** * *
18581917 AACCCTCGATTTGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACT
516 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
** *
18581982 CCGTATGCCTAAGTCAACCCACCAAACGAGTGTGCGG
581 CCGTATGCCTAAGTCAACCCATGAAACGACTGTGCGG
18582019 ATGCTTAGCT
Statistics
Matches: 1961, Mismatches: 356, Indels: 95
0.81 0.15 0.04
Matches are distributed among these distances:
867 141 0.07
868 517 0.26
869 69 0.04
870 8 0.00
871 1 0.00
873 1 0.00
874 1 0.00
875 2 0.00
876 1 0.00
878 210 0.11
879 408 0.21
880 315 0.16
881 286 0.15
882 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (869 bp):
TGGTCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
GACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGT
CAGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCTGCATGCTATCGATCCTGCTAC
CGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACG
AAACAAGCGTTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGAT
CCCCCTCTACATGCTACCGATCCCGTTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAA
TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACCTGTGGGTGCTCAGCCAGTCGGAGAGGC
AGAATGCGCAAGCCGGGGATTAGCCCGATCCCCCCTACGTACTACCGATCCTGCTACCGCAACCC
TCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
TGCCTAAGTCAACCCATGAAACGACTGTGCGGGCGCTCAGCTGGTCAGAGAGGTCGATCGAAGAG
GTATAATGTGCAAGTCGAGGATCAGCTCGGTCCCTCTCTGCGTGCTATCGATCCTGCTACCGGTC
CTGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGTGCTCAATCGGTCGGAGAGGTAGAATGCGCAAGTCGAGGATCGA
CCCGGTCCCCCCTGTATGTTACTC
Found at i:18581077 original size:158 final size:157
Alignment explanation
Indices: 18580592--18581083 Score: 433
Period size: 158 Copynumber: 3.1 Consensus size: 157
18580582 GCTTAGAAAT
* * *
18580592 GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGA-GTGTGCAGGTGCTCAGCCGGTTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTGTG--GGTGCTCAGCCAGTTGGA
* ** * * * * *
18580656 GAGGCAGAATGGGCAAGTTGGGGATCGGCCCGTTCCCCCCTGCGTGCTGTCGATCCTGCTACCGC
64 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTACTATCGATCCTGCTGCCGC
* *
18580721 AACCCTCGATCCGATCTGATCTTAGACTG
129 AACCCTCGGTCCGGTCTGATCTTAGACTG
* * * * ** * * **
18580750 GGAATGAACTCAGTATGCCAAAGTCAACCCACGAAACGAGCGT-TCAGGCACTGAG-CTGACCGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-CGTGT-GGGTGCTCAGCCAG-TTGG
* * * * * * * ***
18580813 AGAGGCATAATGTGCAAGCCAGGGATCGGCTCGATCCCCTTCTACATGAC-ACCGATCCCATTGC
63 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCC-CCTACGT-ACTATCGATCCTGCTGC
* * * **
18580877 CACAACCCTTGGTCCAG-CTAGGGCTTAGACAT-
126 CGCAACCCTCGGTCCGGTCT-GATCTTAGAC-TG
*
18580909 GGAATG-ACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCAGCCAGTTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GACGTGTGGGTGCTCAGCCAGTTGGAG
** * *
18580973 AGGCAGAATGCGCAAGCCGGGGATAAGCCC-AGTCCCCCCTACGTACTATCGATCCTGCTGTCGT
65 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCCTACGTACTATCGATCCTGCTGCCGC
*
18581037 AAACCTCGGTCCGGTCTGATCTTAGACTG
129 AACCCTCGGTCCGGTCTGATCTTAGACTG
18581066 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
18581084 TTAGACAGGG
Statistics
Matches: 250, Mismatches: 68, Indels: 32
0.71 0.19 0.09
Matches are distributed among these distances:
156 3 0.01
157 43 0.17
158 156 0.62
159 44 0.18
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTGTGGGTGCTCAGCCAGTTGGAGA
GGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTACTATCGATCCTGCTGCCGCAA
CCCTCGGTCCGGTCTGATCTTAGACTG
Found at i:18581086 original size:26 final size:26
Alignment explanation
Indices: 18581057--18581109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18581047 CCGGTCTGAT
*
18581057 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
18581083 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
18581109 C
1 C
18581110 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:18581978 original size:26 final size:26
Alignment explanation
Indices: 18581940--18581989 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18581930 GTCTGATGTT
18581940 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
*
18581966 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
18581990 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:18582699 original size:26 final size:26
Alignment explanation
Indices: 18582661--18582713 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18582651 GGCTCAAACT
18582661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18582687 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18582713 C
1 C
18582714 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18583009 original size:159 final size:159
Alignment explanation
Indices: 18582686--18583031 Score: 371
Period size: 159 Copynumber: 2.2 Consensus size: 159
18582676 AACTCCGTAT
* *
18582686 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGAGCGCTCAA
* * * * * ** * *
18582751 CCGACCGGAGAGGCAGAATGCACAGGCTGAGGATCGGCCTGGTCCCCCTCTTTGTGCTGCCGGTC
66 CCGACCAGAGAGGCAAAATGCACAGCCAGAGGATCGGCCTGATCCCCCTCTGCGTGCTACCGATC
* * * *
18582816 CCGCTACCACAACCCTCGGTCTGGCTGGG
131 CCGCTACCACAACCCTCGGTCCGACTAGA
* * *
18582845 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTC-A
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGAGCGCTCAA
* * *
18582909 CTCGATCAGAGAGGCAAAATTCGTA-AGCCAG-GGATCGG-CTCGATCCCCC-CTGCGTGCTATC
66 C-CGACCAGAGAGGCAAAA-T-GCACAGCCAGAGGATCGGCCT-GATCCCCCTCTGCGTGCTACC
*
18582970 GATCCCTGCTA-CAGCAACCCTCGGTCCGATTAGA
127 GATCCC-GCTACCA-CAACCCTCGGTCCGACTAGA
* * *
18583004 TCTTAGACTTGGAGTGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
18583032 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 26, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
158 19 0.12
159 129 0.83
160 5 0.03
161 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGAGCGCTCAA
CCGACCAGAGAGGCAAAATGCACAGCCAGAGGATCGGCCTGATCCCCCTCTGCGTGCTACCGATC
CCGCTACCACAACCCTCGGTCCGACTAGA
Found at i:18583034 original size:26 final size:26
Alignment explanation
Indices: 18583005--18583057 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18582995 CCGATTAGAT
*
18583005 CTTAGACTTGGAG-TGAACTCCGTATG
1 CTTAGAC-TGGAGATAAACTCCGTATG
*
18583031 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGAGATAAACTCCGTATG
18583057 C
1 C
18583058 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATAAACTCCGTATG
Found at i:18583114 original size:13 final size:13
Alignment explanation
Indices: 18583096--18583121 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18583086 GGCGCTCAGT
18583096 CGACCGGAGAGGC
1 CGACCGGAGAGGC
18583109 CGACCGGAGAGGC
1 CGACCGGAGAGGC
18583122 AAAATACGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.46, T:0.00
Consensus pattern (13 bp):
CGACCGGAGAGGC
Found at i:18584136 original size:13 final size:13
Alignment explanation
Indices: 18584118--18584142 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18584108 GCACTCAATT
18584118 GGTCGGAGAGGCC
1 GGTCGGAGAGGCC
18584131 GGTCGGAGAGGC
1 GGTCGGAGAGGC
18584143 AGAATACACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.56, T:0.08
Consensus pattern (13 bp):
GGTCGGAGAGGCC
Found at i:18584459 original size:25 final size:25
Alignment explanation
Indices: 18584422--18584470 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
18584412 GATTTGATCA
18584422 TAGACCGGAATGAACTTCGTATGCT
1 TAGACCGGAATGAACTTCGTATGCT
* *
18584447 TAGACTGGGATGAACTTCGTATGC
1 TAGACCGGAATGAACTTCGTATGC
18584471 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (25 bp):
TAGACCGGAATGAACTTCGTATGCT
Found at i:18584634 original size:392 final size:393
Alignment explanation
Indices: 18583873--18584654 Score: 868
Period size: 392 Copynumber: 2.0 Consensus size: 393
18583863 CTGGGGCGTA
* * *
18583873 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGACAATGACGTATGGGCGCTCACCCAGC
1 GACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGACAACGACGCATGGGCGCTCACCCAGC
** * * * *
18583938 AAAGAGGTAGAATTCGTAAGCTGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTGC
66 AAAGAGGTAGAATAAGCAAGCCGGGGACCAGCCCGGTCCCTCCTACGTGCTGTCGATCCTACTGC
* * *
18584003 CATAACCCTCGGTCTGATTAGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGA
131 CACAACCCTCGGTCTGATTAGATCATAAACTCGGAATGAACTCCGTATGCTTAGACTGAGGATGA
** * *
18584068 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAATTGGTCGGAGAGGCCGG
196 ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAATTGGTCGGAGAGGCCAG
* * **
18584133 TCGGAGAGGCAGAATACACAAACTGGGGATAGGCTCAGTCCCCTCTTGCGTACTACCGATCCTGT
261 TCGGAGAGGCAGAATACACAAACCGGGGATAGGCTCAGTCCCCTCTTACGTACTACCGATCCCAT
* * *** *
18584198 TACTGGTCCTATTACAGCAACCCTCGGTCCGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATG
326 TACCGGTCCTACTACAGCAACCCTCGGTCAACTCCGAGCTTAGACAT-GGAATGAACTCCGTATG
18584262 CTTC
390 CTTC
** * *
18584266 GACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGA-AACGA-GCATGCGGGCGCTCAGCCG
1 GACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGACAACGACGCAT--GGGCGCTCACCCA
** *
18584329 GTCGGAGAGGTAGAATAAGCAAGCCGGGGACC-GACCTGGTTCCC-CCTACGTGCTGTCGATCCT
64 G-CAAAGAGGTAGAATAAGCAAGCCGGGGACCAG-CCCGG-TCCCTCCTACGTGCTGTCGATCCT
* ** * * *
18584392 GCTGCTGCAACCCTCGGTCTGATTTGATCATAGAC-CGGAATGAACTTCGTATGCTTAGACTG-G
126 ACTGCCACAACCCTCGGTCTGATTAGATCATAAACTCGGAATGAACTCCGTATGCTTAGACTGAG
* ** *
18584455 GATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTTCTCAGTTGG-CTGGAGA
191 GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAATTGGTC-GGAGA
* *** * * * **
18584519 GGCCAGTCGGAGAGGCATAATGTGCAAGCCGGGGATCA-GCTCGGTCCCC-CTCTACGTGCTGTC
255 GGCCAGTCGGAGAGGCAGAATACACAAACCGGGGAT-AGGCTCAGTCCCCTCT-TACGTACTACC
* * * * *
18584582 TATCCCATTACCGGTCCTGCTACCA-CAACCCTCAGTTCAACT-GGGGCTTAGACATGGAATGAA
318 GATCCCATTACCGGTCCTACTA-CAGCAACCCTC-GGTCAACTCCGAGCTTAGACATGGAATGAA
18584645 CTCCGTATGC
381 CTCCGTATGC
18584655 CTAAGCCAAC
Statistics
Matches: 321, Mismatches: 57, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
391 6 0.02
392 156 0.49
393 82 0.26
394 73 0.23
395 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (393 bp):
GACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGACAACGACGCATGGGCGCTCACCCAGC
AAAGAGGTAGAATAAGCAAGCCGGGGACCAGCCCGGTCCCTCCTACGTGCTGTCGATCCTACTGC
CACAACCCTCGGTCTGATTAGATCATAAACTCGGAATGAACTCCGTATGCTTAGACTGAGGATGA
ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAATTGGTCGGAGAGGCCAG
TCGGAGAGGCAGAATACACAAACCGGGGATAGGCTCAGTCCCCTCTTACGTACTACCGATCCCAT
TACCGGTCCTACTACAGCAACCCTCGGTCAACTCCGAGCTTAGACATGGAATGAACTCCGTATGC
TTC
Found at i:18584816 original size:26 final size:26
Alignment explanation
Indices: 18584779--18584838 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
18584769 CCTCGGTCTG
18584779 GTCCG-AT-CTTAGAC-TAGGAATGAA
1 GTCCGTATGCTTAGACGT-GGAATGAA
18584803 GTCCGTATGCTTAGACGTGGAATGAA
1 GTCCGTATGCTTAGACGTGGAATGAA
* *
18584829 CTCTGTATGC
1 GTCCGTATGC
18584839 CTAAGCCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 23 0.74
27 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
GTCCGTATGCTTAGACGTGGAATGAA
Found at i:18584826 original size:184 final size:184
Alignment explanation
Indices: 18584627--18584996 Score: 485
Period size: 184 Copynumber: 2.0 Consensus size: 184
18584617 TTCAACTGGG
*
18584627 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGA-ACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC-ATACGGGTGCTCA
* * * *
18584691 GCCGATCGGAGAGGCTGAATGCGAAAGTCAGGGA-TCGGCCCGATCCCCCCTGCGTGCTATCAAT
65 ACCGATCGGAAAGGCAGAATGCGAAAGTCAGGGACT-GGCCCGATCCCCCCTGCATGCTATCAAT
* * *
18584755 CTTACTG-CTGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAAGTCCGTAT
129 CCTACTGTC-GCAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTAT
* * * *
18584811 GCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAA
* * * * * * * *
18584876 TCGGTCGGAAAGGCAGAATGTGCAAGTCAGGGACTGGCTCGGTCCCCCCTGCATGCTGTTAATCC
66 CCGATCGGAAAGGCAGAATGCGAAAGTCAGGGACTGGCCCGATCCCCCCTGCATGCTATCAATCC
* * *
18584941 TGCTGTCGCAACCCTTGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
131 TACTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTAT
18584995 GC
1 GC
18584997 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 1 0.01
184 157 0.98
185 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAA
CCGATCGGAAAGGCAGAATGCGAAAGTCAGGGACTGGCCCGATCCCCCCTGCATGCTATCAATCC
TACTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:18585159 original size:159 final size:157
Alignment explanation
Indices: 18584811--18585273 Score: 464
Period size: 159 Copynumber: 2.9 Consensus size: 157
18584801 AAGTCCGTAT
* **
18584811 GCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAA
* * * * *
18584876 TCGGTCGGAAAGGCAGAATGTGCAAGTC-AGGGA-CTGGCTCGGTCCCCCCTGCATGCTGTTAAT
65 CCGGTCGGAGAGGCAGAATGTGCAAGTCGA-GGATC-GACCCGGTCCCCCCTGCGTGCTGTTAAT
* * * *
18584939 CCTGCTGTCGCAACCCTTGGTCTGGTCTAA
128 CCCGCTGCCACAACCCTCGGTCTGGTCTAA
* * * *
18584969 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTGAA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAA
* * * * * * **
18585034 CCGATCGGAGAGGCATAATGTGTAAGCCGAGGATCGACCCGATCCCCCTCTGTGTGCTGTTGGTC
65 CCGGTCGGAGAGGCAGAATGTGCAAGTCGAGGATCGACCCGGTCCCCC-CTGCGTGCTGTTAATC
* **
18585099 CCGTTGCCACAACCCTCGGTCTGG-CTGGG
129 CCGCTGCCACAACCCTCGGTCTGGTCT-AA
* * * * * *
18585128 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAA
* * * * **
18585193 CCGGCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCC
65 CCGGTCGGAGAGGCAGAATGTGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTTAATCC
* * *
18585258 TGCTGTCGCAACCCTC
130 CGCTGCCACAACCCTC
18585274 TATCCAGTCC
Statistics
Matches: 244, Mismatches: 55, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 117 0.48
159 125 0.51
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAAC
CGGTCGGAGAGGCAGAATGTGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTTAATCCC
GCTGCCACAACCCTCGGTCTGGTCTAA
Found at i:18585328 original size:26 final size:26
Alignment explanation
Indices: 18585287--18585339 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18585277 CCAGTCCGAT
*
18585287 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18585313 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
18585339 C
1 C
18585340 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18586409 original size:159 final size:158
Alignment explanation
Indices: 18586021--18586460 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 158
18586011 AACTCCATAT
* * * *
18586021 GCTTAGACATGGAATGAATTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAA
* ** * * * * **
18586086 CTGGCCGAAGAGGCAGAATGCACAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCC
66 CCGATCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCCTACGTGCTACCGATCC
* **
18586151 TGCTACCACAACCCTTGGTCCGGTCTAA
131 CGCTACCACAACCCTCAGTCCGGTCTAA
* * * * * *
18586179 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCCGGGCGCTA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGGCGCTA
** * * * *
18586243 AACCGATCGAAGAGGCATTATGCGCAAGTCGGGGATCAGCCCGATCCCCTTCTATGTGCTACCGG
64 AACCGATCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCC-CCTACGTGCTACCGA
* * **
18586308 TCCCGCTCCCACAACCCTCAGTCTGG-CTGGG
128 TCCCGCTACCACAACCCTCAGTCCGGTCT-AA
* ** *
18586339 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGATGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTAA
* * * *
18586403 ACCGATCGGAA-AGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCT
65 ACCGATC-GAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCCTACGTGCT
18586461 GTCGATCTTG
Statistics
Matches: 225, Mismatches: 50, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 51 0.23
159 96 0.43
160 76 0.34
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAA
CCGATCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCCTACGTGCTACCGATCC
CGCTACCACAACCCTCAGTCCGGTCTAA
Found at i:18586852 original size:171 final size:171
Alignment explanation
Indices: 18586536--18586856 Score: 376
Period size: 171 Copynumber: 1.9 Consensus size: 171
18586526 TAGAATGGGG
* * * * **
18586536 ATGAACTCCATATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCAACCAGAGAGG
* * * * **
18586601 CATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGATGCCACTGTCGATCC
66 AAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATGCCACTGTCGATCC
*
18586666 TGCTACCACAACCCTCGATCCGGCTGGGACTTAGACATGGA
131 TACTACCACAACCCTCGATCCGGCTGGGACTTAGACATGGA
** * *
18586707 ATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGCCAACCGGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCAACCAGAGAGG
** ** * *
18586772 AAGAATGCACAAGCTGGGGATCAGCCCGATCCCTCCT-TGTGTGCTACCGAT-CCTACTGTTGGT
66 AAGAATGCACAAGCCAGGGATCAGCCCGATCCC-CCTCTGCATGCTACCGATGCC-ACTGTCGAT
* **
18586835 CCTACTGCCGTAACCCTCGATC
129 CCTACTACCACAACCCTCGATC
18586857 TGATCTGATC
Statistics
Matches: 122, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
170 2 0.02
171 117 0.96
172 3 0.02
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (171 bp):
ATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCAACCAGAGAGG
AAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATGCCACTGTCGATCC
TACTACCACAACCCTCGATCCGGCTGGGACTTAGACATGGA
Found at i:18587483 original size:354 final size:356
Alignment explanation
Indices: 18586340--18587483 Score: 1063
Period size: 355 Copynumber: 3.2 Consensus size: 356
18586330 CTGGCTGGGG
** * * * **
18586340 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGATGCTCA
1 CTTAGA-ATGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAG-CGTACGGGCGCTCA
* * * * * *
18586403 ACCGATCGGAAAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCC-CCCTGCGTGCT---G-T
64 GCCGACCGGAGAGGCAGAATACACAAGCCGGGGATCAGCCCGATCCCTCCCTGCGTGCTACCGAT
* * * * * * * * *
18586463 -CGA-TCTT-G-----CTGTCGTAACCCTCGGTCCAATCCGATCTTAGACTCGAAATGAACTTCA
129 CCTACTGTTGGTCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCA
* * * *
18586520 TATGCTTAGA-ATGGGGATGAACTCCATATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGC
194 TATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGC
* * * ** *
18586584 TCAGCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTGTC
258 TCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCC-CTGCGTGCTGTC
* * * * * **
18586649 GATGCCACTGTCGATCCTGCTACCACAACCCTCGATCCGGCTGGGA-
322 GAT--C-CTG-CAAT-C-GC-A--AC--CCTTAG-TCCAGATCCGAT
* *
18586695 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * *
18586759 CCAACCGGAGAGGAAGAATGCACAAGCTGGGGATCAGCCCGATCCCTCCTTGTGTGCTACCGATC
65 CCGACCGGAGAGGCAGAATACACAAGCCGGGGATCAGCCCGATCCCTCCCTGCGTGCTACCGATC
* * *
18586824 CTACTGTTGGTCCTACTGCCGTAACCCTCGATCTGATCTGATCTTAGACTGGGAACGAACTTCAT
130 CTACTGTTGGTCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCAT
* ** * * * * * *
18586889 ATGCTTAGACATGGAATAAACTCTGTATGCCTCAGCCATCCCATGAAACAAGCGCGTGGGCACTC
195 ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
** * * * **
18586954 AATCGATCGGAGAAGGTAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCAGCTGCGTGCTGTCGA
260 AGCCGGTCGGAG-AGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGA
* * * * *
18587019 TCCTGCTATCTCAACCCTCAGT-CTGATCTGAT
324 TCCTGCAATCGCAACCCTTAGTCCAGATCCGAT
* * *
18587051 CTTAGACTGGGAATGAACTCTGTGTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * * ** *
18587116 TGATCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCTGATCCC-CCCTGCGTGCTGTCGATCT
66 CGACCGGAGAGGCAGAATACACAAGCCGGGGATCAGCCCGATCCCTCCCTGCGTGCTACCGATCC
* ** * * **
18587180 TGCTGTTGGTCCTACTGTTGCAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGC
131 TACTGTTGGTCCTACTGCCGCAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAACTTCAT
* * * *
18587244 ACGCTTAGACATGGAATGAACTCCATATTCCTAAGCCAACCCGTGAAACGAGCGTACGGGCGCTC
195 ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* *
18587309 AGCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGAT
260 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGAT
18587374 CCTGCAATCGCAACCCTTAGTCCAG-TCCGAT
325 CCTGCAATCGCAACCCTTAGTCCAGATCCGAT
* * * * *
18587405 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTGAGC
1 CTTAGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
*
18587470 CGACCGAAGAGGCA
66 CGACCGGAGAGGCA
18587484 TAATGTGCAA
Statistics
Matches: 642, Mismatches: 127, Indels: 41
0.79 0.16 0.05
Matches are distributed among these distances:
354 140 0.22
355 228 0.36
356 106 0.17
357 3 0.00
359 3 0.00
360 1 0.00
361 3 0.00
362 4 0.01
363 2 0.00
364 3 0.00
365 3 0.00
366 1 0.00
368 112 0.17
369 33 0.05
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (356 bp):
CTTAGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGACCGGAGAGGCAGAATACACAAGCCGGGGATCAGCCCGATCCCTCCCTGCGTGCTACCGATCC
TACTGTTGGTCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCATA
TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
CTGCAATCGCAACCCTTAGTCCAGATCCGAT
Found at i:18587568 original size:158 final size:158
Alignment explanation
Indices: 18587402--18587747 Score: 353
Period size: 158 Copynumber: 2.2 Consensus size: 158
18587392 AGTCCAGTCC
* ** * *
18587402 GATCTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGC-GTT
1 GATCTTAGATTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTC
* *
18587466 GAGCCGACCGAAGAGGCATAATGTGCAAGATGGGGAACGG-CTCGGTCCCCCTCTGCATGCTA-T
66 GA-CCGACCGAAGAGGCAGAATGTGCAAGACGGGGAACGGCCT-GGTCCCCCT-TGCATGC-AGT
* *
18587529 CGGTCCTGCTGCCATAACCCTTGATCC-GACT
127 CGATCCTGCTGCCATAACCCTCGATCCGGACT
* * * * * * * *
18587560 AGA-GTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGTCAC
1 -GATCTTAGA-TTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCAC
** * * * *
18587623 TCGACCGATTGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCCTGGTCCCCCTTGCATGCAGTCG
64 TCGACCGACCGAAGAGGCAGAATGTGCAAGACGGGGAACGGCCTGGTCCCCCTTGCATGCAGTCG
* * * *
18587688 ATCCTGCTGTCGTAACCCTCGGTCCGGTCT
129 ATCCTGCTGCCATAACCCTCGATCCGGACT
18587718 GATCTTAGATTGGGAATGAACTCCGTATGC
1 GATCTTAGATTGGGAATGAACTCCGTATGC
18587748 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 30, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.01
157 33 0.22
158 108 0.72
159 8 0.05
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.22
Consensus pattern (158 bp):
GATCTTAGATTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTC
GACCGACCGAAGAGGCAGAATGTGCAAGACGGGGAACGGCCTGGTCCCCCTTGCATGCAGTCGAT
CCTGCTGCCATAACCCTCGATCCGGACT
Found at i:18587750 original size:26 final size:26
Alignment explanation
Indices: 18587721--18587780 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
18587711 CCGGTCTGAT
* *
18587721 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18587747 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18587773 CTTAGACT
1 CTTAGACT
18587781 AGAGATGAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18587798 original size:26 final size:26
Alignment explanation
Indices: 18587721--18587799 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
18587711 CCGGTCTGAT
* *
18587721 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
18587747 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
18587773 CTTAGACT-AGAGATGAACTCTGTATG
1 CTTAGACTGAGA-ATGAACTCCGTATG
18587799 C
1 C
18587800 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 2 0.04
26 45 0.96
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18588501 original size:26 final size:26
Alignment explanation
Indices: 18588450--18588502 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18588440 CTGATCTGAT
*
18588450 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
18588476 CTTAGATTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18588502 C
1 C
18588503 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18591341 original size:161 final size:159
Alignment explanation
Indices: 18591174--18591577 Score: 404
Period size: 158 Copynumber: 2.5 Consensus size: 159
18591164 CCTAGTGTTG
* * *
18591174 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCCAACCCATAA
1 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCAACCCACAA
* * * * *
18591239 AATGAGCGTGCAGGCGCTGAGCATGATCAGAAAGGCATAATGCGCAAGCCGGGGATCGGCCCGAT
66 AATGAGCGTGCAGGCGCTCAGCAGGAT-AAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAAT
* * * *
18591304 CCCCCTCTGCGTGCTGCCGCTCCCGCTACCA
130 CCCCCT-TACGTACTGCCGATCCCACTACCA
** ** * * *
18591335 CAACCCTTAATCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATACCTAAG-CCAACCTAC
1 CAACCCTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCCAACCCAC
* * * * * * * *
18591397 AAAACGGGTGTGCGGGCGCTCAGCCGGCTAAAAAGGCAGAATGCGCAAGCCGGGGATTGGCTCAA
64 AAAATGAGCGTGCAGGCGCTCAGCAGGATAAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAA
* * *
18591462 TCCCCCTTACGTACTGTCGATCCTACTACCG
129 TCCCCCTTACGTACTGCCGATCCCACTACCA
* * ** *
18591493 TAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT-CAACCCACGA
1 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCAACCCACAA
* *
18591557 AATGAGTGT-CGGGCGCTCAGC
66 AATGAGCGTGCAGGCGCTCAGC
18591578 CGACCAGAGA
Statistics
Matches: 194, Mismatches: 44, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
157 13 0.07
158 71 0.37
159 39 0.20
160 30 0.15
161 40 0.21
162 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (159 bp):
CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCAACCCACAA
AATGAGCGTGCAGGCGCTCAGCAGGATAAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATC
CCCCTTACGTACTGCCGATCCCACTACCA
Found at i:18592743 original size:26 final size:26
Alignment explanation
Indices: 18592704--18592757 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
18592694 GGTCTAATCT
18592704 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* *
18592730 TAGACTGGGGATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
18592756 TA
1 TA
18592758 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:18593504 original size:159 final size:158
Alignment explanation
Indices: 18593095--18593497 Score: 414
Period size: 159 Copynumber: 2.5 Consensus size: 158
18593085 AACTCTGTAT
* * * * *
18593095 GCTTAGACATGGAATTAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGCGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
18593160 CCGATCGGAGAGGCAGAATGCAAAAGTCGGGGACCGACCCGATCCCCCCTACATGCTGTCAATCC
66 CCGACCAGAGAGGCAGAATGCAAAAGTCGGGGACCGACCCGATCCCCCCTACATGCTGTCAATCC
* * *
18593225 TACTATCGCAACCCTCGGTCCAATCCGA
131 CACTACCACAACCCTCGGTCCAATCCGA
* ** * * * * * * *
18593253 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAATCAACTCACAAAACAAGCGTACCGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * * **
18593317 GCCGGCCTGAGAGGCATAATGCACAAGTCGGGGAGTGATCCGATCCCCCTCTACGTGCTGTCGGT
65 GCCGACCAGAGAGGCAGAATGCAAAAGTCGGGGACCGACCCGATCCCCC-CTACATGCTGTCAAT
* *** * *
18593382 CCCACTGCCACAACCCTCGGT-CTGGCTGGG
129 CCCACTACCACAACCCTCGGTCCAATC-CGA
*
18593412 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
18593477 TCGACCAGAGAGGCAGGATGC
66 CCGACCAGAGAGGCAGAATGC
18593498 GTAAGTCAGG
Statistics
Matches: 191, Mismatches: 50, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
157 1 0.01
158 91 0.48
159 98 0.51
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCAAAAGTCGGGGACCGACCCGATCCCCCCTACATGCTGTCAATCC
CACTACCACAACCCTCGGTCCAATCCGA
Found at i:18595362 original size:26 final size:26
Alignment explanation
Indices: 18595324--18595376 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18595314 CCAATTCGAT
18595324 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18595350 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18595376 C
1 C
18595377 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18595537 original size:26 final size:26
Alignment explanation
Indices: 18595508--18595560 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18595498 CCGGTCTGAT
*
18595508 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCATATG
18595534 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
18595560 C
1 C
18595561 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:18595909 original size:184 final size:185
Alignment explanation
Indices: 18595719--18596087 Score: 478
Period size: 184 Copynumber: 2.0 Consensus size: 185
18595709 CAGCTGGGGT
* * **
18595719 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAACC
* * * * *
18595784 GATCGGAGAGGCAGAATGCGCAAGTCGAGGATC-AGCTCGAT-CCCCCCTGCGTGCTGGCAATCC
66 GATCGGAGAGGCAGAATGCACAAGCCGAGGATCGA-CCCGATCCCCCCCTACGTGCTAGCAATCC
*
18595847 TGCTG-TGGCAACCCTCAGT-TCGGT-TCAATCTTAGACTGGGAATGAACTCCGTATGC
130 TGCTGCT-GCAACCCTCGGTCT-GGTCT-AATCTTAGACTGGGAATGAACTCCGTATGC
*
18595903 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAACC
* * * * * ***
18595968 GGTTGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCCCTACGTGCTATTGATCCT
66 GATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCCTACGTGCTAGCAATCCT
* *
18596033 GCTGCTGCAACCCTCGGTCTGGTCTGATCTTATACTGGGAATGAACTCCGTATGC
131 GCTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGC
18596088 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
184 91 0.57
185 65 0.41
186 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (185 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAACC
GATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCCTACGTGCTAGCAATCCT
GCTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:18595914 original size:26 final size:26
Alignment explanation
Indices: 18595876--18595928 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18595866 TCGGTTCAAT
18595876 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18595902 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18595928 C
1 C
18595929 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18596203 original size:159 final size:158
Alignment explanation
Indices: 18595902--18596397 Score: 506
Period size: 158 Copynumber: 3.1 Consensus size: 158
18595892 ACTCCGTATG
* *
18595902 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** * * ***
18595966 CCGGTTGGAGAGGCAGAATGCAT-AAGCCGGGGATCGACCCGGTCCCCCCCTACGTGCTATTGAT
65 CCGGCCGGAGAGGCAGAATGC-TCAAGCCGAGGATCGACCCGGT-CCCCCCTGCGTGCTGCCGAT
**
18596030 CCTGCTGCTGCAACCCTCGGTCTGGTCTGAT
128 CCTGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * * *
18596061 CTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * *
18596126 CGACCAGAGAGGCATAATGCTCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCC-AGT-
66 CGGCCGGAGAGGCAGAATGCTCAAGCCGAGGATCGACCCGGTCCCCC-CTGCGTGCTGCCGA-TC
*
18596189 CTCGCTGCCACAA-CCTCGGTCTGGT-TGGAG
129 CT-GCTGCCACAACCCTCGGTCTGGTCT-GAT
** * * *
18596219 CTTAGACAT-GGAATGAACTCCCCATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
18596283 CCGGGCGGAGATGCAGAATGCGCAAGCC-AGGGATCGACCTGGTCCCTCCTGCGTGCTGCCGATC
65 CCGGCCGGAGAGGCAGAATGCTCAAGCCGA-GGATCGACCCGGTCCCCCCTGCGTGCTGCCGATC
* * * * *
18596347 CTACTGTCATAGCCCTCAGTCTGGTCCT-AT
129 CTGCTGCCACAACCCTCGGTCTGGT-CTGAT
18596377 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
18596398 ATATTCTTAG
Statistics
Matches: 275, Mismatches: 48, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
157 22 0.08
158 146 0.53
159 106 0.39
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAGAATGCTCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCGGTCTGGTCTGAT
Found at i:18597137 original size:26 final size:26
Alignment explanation
Indices: 18597101--18597171 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
18597091 ATTTTACACT
18597101 TGGAATGAACTCCGTATGCTTAAACA
1 TGGAATGAACTCCGTATGCTTAAACA
*
18597127 TGGAATGAACTCCATATGCTTAAACA
1 TGGAATGAACTCCGTATGCTTAAACA
18597153 TGGAATGAACTCCGTATGC
1 TGGAATGAACTCCGTATGC
18597172 CTAAGCCAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
TGGAATGAACTCCGTATGCTTAAACA
Found at i:18598337 original size:26 final size:26
Alignment explanation
Indices: 18598301--18598353 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18598291 CTGGTCTGAT
18598301 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
18598327 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
18598353 C
1 C
18598354 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:18599034 original size:26 final size:25
Alignment explanation
Indices: 18598998--18599049 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
18598988 CTGGTTCGAT
*
18598998 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACT-CGTATG
*
18599024 CTTAAACTGGGGATGAACTCGTATG
1 CTTAAACTGGGAATGAACTCGTATG
18599049 C
1 C
18599050 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAAACTGGGAATGAACTCGTATG
Found at i:18599903 original size:26 final size:26
Alignment explanation
Indices: 18599863--18599912 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18599853 TGATCTGATC
18599863 TTAGACTAGGAATGAACTCCGTATAA
1 TTAGACTAGGAATGAACTCCGTATAA
* *
18599889 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTAGGAATGAACTCCGTAT
18599913 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATAA
Found at i:18600263 original size:26 final size:26
Alignment explanation
Indices: 18600225--18600275 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18600215 CTAGTCTGAT
18600225 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
18600251 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
18600276 GCATAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:18600754 original size:26 final size:26
Alignment explanation
Indices: 18600725--18600777 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18600715 CCGGTCTGAT
* *
18600725 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
18600751 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
18600777 C
1 C
18600778 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:18601430 original size:881 final size:877
Alignment explanation
Indices: 18598461--18601685 Score: 3085
Period size: 881 Copynumber: 3.7 Consensus size: 877
18598451 CGATCCTTGT
* ** * *
18598461 TGGTCCTGCTGCTGCAACCCTCGATCCGATCCGATCTT-TGACTGGGAATGAACTCCATATGCTT
1 TGGTCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAT-ACTGGGAATGAACTCCATATGCTT
* * ** * ** *
18598525 AGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTATGCGGGTGCTCAGTCGG
65 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGG
* * * * * * * *
18598590 TCGGAGAGCCAGAATGCACAAGCCGGGTATCGGCTCGATCCCCTCCTACATGCTATTGATCCTGT
130 TCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCC-CCTGCATGCTATCGATCCTGC
** * ** *
18598655 TGTCGCAACCCTTGGTCC-AGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
193 TACCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACC
* * * * * ** * *
18598719 AATGAAATAAGCGTTCGGACGCTGAGCCGA-CTGGAGAGACATAATATGCAAG-CTGAGGATCGA
257 CACGAAATAAGCGTTCGGGCGCTGAGCC-ATCGGGAGAGGCATAATGCGCAAGCCAG-GGATCGG
** ** * ** * *
18598782 CCCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTTG-GTAGGGGCTTAGA
320 CCCGATCCCCCTCTGCATGCTACCGATCCCTTTGCCACAACCCTCGGTTCGACTA-GGGCTTAGA
* * * * * * * *
18598846 CATAGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTACGGGCGCTCAGTCGGCCA
384 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTGCGGGCGCTCAGCCAGCCG
* * * * * *
18598911 AAGAGGCATAATGCGCAAGCCAGGGAT-CGACCCGATCCCCCCTACGTGCTGTCGAACCTGCTAT
449 GAGAGGCAGAATGCGCAAGCCAGGGATAAG-CTCGATCCCCCCTACGTGCTGCCGATCCTGCTAT
* *
18598975 CGCAACCCTCGATCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATG
513 CGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* * * * * * * *
18599039 AACT-CGTATGCCTAAGTCAACCCATAAAACAAGCGTGCGGGTGCTCAACCGGTCAAAGAGGCCG
577 AACTCCGTATGCCTAAGTCAACCCATAAAACGAGTGTGCGGGCGCTC-AGCTG-CAGAGAAGTCG
* * * * *
18599103 GTCGGAGAGGTATAATGTGCAAGTCGGGGATCAGCTCGGTGCCTCTCTACGTGCTG-CTGGT-CT
640 GTCGAAGAGGTATAATGTGCAAGTCCGGGATCAGCTCGATCCCTCTCTACGTGCTGTC-GATCCT
* * * * * * *
18599166 CACTACCGATCCTGCTGCCACAACCCTTGGTCCGGCTGGGGGTTAGACATGGAATGAACTCTGTA
704 -GCTACCGGTCCTGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTA
* * * * * * * * *
18599231 TGCCTAGGGCAACCCATGAAACAAGAGTGCGGGCGATCAGTTGGTCGGAGAGGTAGAATGCGTAA
768 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAA
* * * *
18599296 GTCAAGGATCAGCTTGAT-G---CC--C--CTT--A-CGTGCTGC
833 GCCGAGGATCGGCTTGATCGCCCCCTGCTGCTTCAATCCTGCTGC
* * * *
18599330 TGGTCCTGCTGCCACAACCCTCGGTCTGGTCCT-ATCTTATACTGGGAATGAACTCTATATGCTT
1 TGGTCCTGCTACCACAACCCTCGATCCGGT-CTGATCTTATACTGGGAATGAACTCCATATGCTT
* * * * ** *
18599394 AGACATGGAATGAACTCCGTATGCTTAAGCCAACCCAAC-AAACTAGCGTACGGGTGCTCAACC-
65 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-ACGAAACGAGCGTGCAGGCACTCAGCCG
* * * * ** * * *
18599457 GTCATAAAGGCTGAATGCGTAAGCCGAAGATCGACCCGATCCCCCTGCATGCTATCAATCCTACT
129 GTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCATGCTATCGATCCTGCT
* * * *
18599522 ACTGCAAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCAGTATGTCGAAGTCAACCC
194 ACCGC-AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCC
* * * *
18599587 ACGAAATGATCGTTC-GGCGCTGAGCGATCGGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCC
258 ACGAAATAAGCGTTCGGGCGCTGAGCCATCGGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCC
* * * * *
18599651 GGT--CCCTCTGCATGCTGCTGAT-CCTGTTGCCACAACCCTCGGTTCGGCTAGGGCTTAGACTT
323 GATCCCCCTCTGCATGCTACCGATCCCT-TTGCCACAACCCTCGGTTCGACTAGGGCTTAGACAT
* * * * ** * *
18599713 GGAATAAACTCCCAATGCCTAAG-CAACCCATGAAACGGACGTGTAGGTGCTCAGCCAGTCGGAG
387 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTGCGGGCGCTCAGCCAGCCGGAG
* * * * * * *
18599777 AGGCAAGAATGCGGAAGTCAGGGATTAGCTCGATCACCCCTGCGTGCTGCCGATCCTACTGTCGC
452 AGGC-AGAATGCGCAAGCCAGGGATAAGCTCGATCCCCCCTACGTGCTGCCGATCCTGCTATCGC
* * **
18599842 AACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATAATTAGACTGGGGATGAACT
516 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* * * *
18599907 CCGTATGCCTAAGTCAACCCATGAAACGACTGTAC-GGCGCTCAGCTAGC-G-GAAGGTCGATCG
581 CCGTATGCCTAAGTCAACCCATAAAACGAGTGTGCGGGCGCTCAGCT-GCAGAGAA-GTCGGTCG
* * * * * *
18599969 AAGAGGCATAATGTGCAAG-CCGGGATCAGCTCGATCCCCCTCTACATGCTATCGATCCCGTTAC
644 AAGAGGTATAATGTGCAAGTCCGGGATCAGCTCGATCCCTCTCTACGTGCTGTCGATCCTGCTAC
* * * * * *
18600033 CGGTCCTGCTACCATAACCCTC-AGT-CTGTTGGGGCTTAGACAAGGAATGAAATCCGTATGCCT
709 CGGTCCTGCTGCCACAACCCTCGA-TCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* * * * * * *
18600096 AAGCCAACCCACGAGACGAGCGTACGGGTGCTCAGTCGGCTGGAGAGGCAGAATGTGCAAGTCTG
773 AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAG-CCG
* ** * *
18600161 -GGATCGAC-CCAGTC-CCCCTTGTATG-TTACCAATCCTG-T--
837 AGGATCGGCTTGA-TCGCCCCCTG-CTGCTT--CAATCCTGCTGC
* ** * * * *
18600199 T-G-CC-G------CAACCCTCGGTCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATCCTTA
1 TGGTCCTGCTACCACAACCCTCGATCCGGTCTGATCTTATACTGGGAATGAACTCCATATGCTTA
* * *
18600255 GACATGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACGAACGTGCAGGCACTCAGCCGGT
66 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGT
** ** * * * * * *
18600320 TGGAGAGGCAGAATGCGCAAGTTGGGGATTGGCTCGGTCCCCCTGCGTGCTGTTGATCCTGCTAC
131 CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCATGCTATCGATCCTGCTAC
* *
18600385 CGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCAAAGTCAACCCACG
196 CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACG
* * * * * * * *
18600450 AAATGAGTGTTCAGGCACTGAGCCCA-CCGGAAAGGCATAATGTGCAAGCCAGGGATCGGCTCGA
261 AAATAAGCGTTCGGGCGCTGAG-CCATCGGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGA
* * * * *
18600514 TCCCCTTCTGCATGAC-ATCGATCCCATTGCCACAACCCTTGGTCCGACTAGGGCTTAGACATGG
325 TCCCCCTCTGCATG-CTACCGATCCCTTTGCCACAACCCTCGGTTCGACTAGGGCTTAGACATGG
* * * **
18600578 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTGTGGGTGCTCAACCAGTTGGAGAG
389 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTGCGGGCGCTCAGCCAGCCGGAGAG
* ** * * * *
18600643 GCAGAATGCGCAAGCCAGGGATAAGCTCGGTCCCCCCTACGTATTGTCGATCCTGCTGTCGTAAA
454 GCAGAATGCGCAAGCCAGGGATAAGCTCGATCCCCCCTACGTGCTGCCGATCCTGCTATCGCAAC
* * * * * *
18600708 CCTCAGTCCGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCTTAGACAGGGAATGAACTCTG
519 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCG
* * *
18600773 TATGCCTAAGTCAACCCATAAAATGAGTGTGCGGGCACTCAGTCTGCCAGAGAAGTCGGTCGAAA
584 TATGCCTAAGTCAACCCATAAAACGAGTGTGCGGGCGCTCAG-CTG-CAGAGAAGTCGGTCGAAG
* * * * *
18600838 AGGTATAATGTGTAAGTCTGGGATCAGCTTGATCCCTCTCTATGTGCTGTCGATCCTGCTATCGG
647 AGGTATAATGTGCAAGTCCGGGATCAGCTCGATCCCTCTCTACGTGCTGTCGATCCTGCTACCGG
* *
18600903 TCCTACTGCCACAACCCTCGATCCAGCTGGGGCTTAGTCATGGAATGAACTCCGTATGCCTAAGC
712 TCCTGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * *
18600968 CAACCCATGAAATGAGCGTGCGGGCGCTAAGTCGGCCGGAGAGGCAGAATACGCAAGCCGAGAAT
777 CAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGAT
18601033 CGGCTTGATCGCCCCCTGCGTGCTGTCAATCCTGCTGC
842 CGGCTTGATCGCCCCCTGC-TGCT-TCAATCCTGCTGC
* * *
18601071 TGGTCCTGCTACCACAACACTCGATCCGGTCTGATCTTATACTGGGAATGAACTTCGTATGCTTA
1 TGGTCCTGCTACCACAACCCTCGATCCGGTCTGATCTTATACTGGGAATGAACTCCATATGCTTA
* * *
18601136 GACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTGCAGGCACTTAGCCGAT
66 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGT
* * ** * *
18601201 CAGAGAGGCAGAATGCGTAAGCCGGGGATCGTCCCGATCCCTCCTGTGTGCTGTCGATCTTGCTA
131 CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCTGCATGCTATCGATCCTGCTA
* * * * * *
18601266 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAATCCAC
195 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCAC
* * * ** * ** *
18601331 GAAACAAGCGTGT-GGGTGCTGAACTGGTC-GGAGAGGCATAATGCACAAGTGA-GGATCGGCCT
260 GAAATAAGCGT-TCGGGCGCTGAGC-CATCGGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCC
* * * *
18601393 GATCCCCCTCTGCGTGCTACCGGTCCCTTTACCACAACCCTCGGTTC-AGCTGGGGCTTAGACAT
323 GATCCCCCTCTGCATGCTACCGATCCCTTTGCCACAACCCTCGGTTCGA-CTAGGGCTTAGACAT
* * * * *
18601457 GGAATGAACTCCCTATGCCTAAGCGAACGCATGAAATAGGCGTGCGGGCGCTCAGCC-GACCGGA
387 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTGCGGGCGCTCAGCCAG-CCGGA
* * * * * * *
18601521 GAGGCAGAATGCGTAAGCC-GAGGATAGGCTCGATCCCCCCTGCATGTTACCGATCCTGCTACCG
451 GAGGCAGAATGCGCAAGCCAG-GGATAAGCTCGATCCCCCCTACGTGCTGCCGATCCTGCTATCG
* * *
18601585 CAACCCTCGGTCTGGTCTGATGTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGGATGAAC
515 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
** *
18601650 TCCGTATGCCTAAGTCAACCCACCAAACGAGCGTGC
580 TCCGTATGCCTAAGTCAACCCATAAAACGAGTGTGC
18601686 AGATGCTTAG
Statistics
Matches: 1897, Mismatches: 381, Indels: 144
0.78 0.16 0.06
Matches are distributed among these distances:
859 4 0.00
860 246 0.13
861 143 0.08
862 27 0.01
863 240 0.13
864 226 0.12
865 37 0.02
866 81 0.04
867 131 0.07
868 124 0.07
869 123 0.06
870 5 0.00
871 3 0.00
872 4 0.00
873 1 0.00
874 2 0.00
875 1 0.00
880 4 0.00
881 384 0.20
882 109 0.06
883 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (877 bp):
TGGTCCTGCTACCACAACCCTCGATCCGGTCTGATCTTATACTGGGAATGAACTCCATATGCTTA
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGT
CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCATGCTATCGATCCTGCTAC
CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACG
AAATAAGCGTTCGGGCGCTGAGCCATCGGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGAT
CCCCCTCTGCATGCTACCGATCCCTTTGCCACAACCCTCGGTTCGACTAGGGCTTAGACATGGAA
TGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTGCGGGCGCTCAGCCAGCCGGAGAGGC
AGAATGCGCAAGCCAGGGATAAGCTCGATCCCCCCTACGTGCTGCCGATCCTGCTATCGCAACCC
TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
TGCCTAAGTCAACCCATAAAACGAGTGTGCGGGCGCTCAGCTGCAGAGAAGTCGGTCGAAGAGGT
ATAATGTGCAAGTCCGGGATCAGCTCGATCCCTCTCTACGTGCTGTCGATCCTGCTACCGGTCCT
GCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGC
TTGATCGCCCCCTGCTGCTTCAATCCTGCTGC
Found at i:18601431 original size:158 final size:158
Alignment explanation
Indices: 18601132--18601632 Score: 408
Period size: 158 Copynumber: 3.2 Consensus size: 158
18601122 ACTTCGTATG
* * * * * * * * *
18601132 CTTAGAC-ATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTGCAGGCACTTAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCGAACGCACGAAACAAGCGTGCGGGCGCTCAA
* * ** * * * * * ** ** *
18601196 CCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGTCCCGATCCCTCCTGTGTGCTGTCGATCT
65 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATAGGCTCGATCCCCCCTGCATGCTACCGATCC
18601261 TGCTACCGCAACCCTCGGTCTGGTCTGAT
130 TGCTACCGCAACCCTCGGTCTGGTCTGAT
* * * *
18601290 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTC-AATC-CACGAAACAAGCGTGTGGGTGCTGA
1 CTTAGACTAGGAATGAACTCCATATGCCTAAG-CGAA-CGCACGAAACAAGCGTGCGGGCGCTCA
* ** * * * * *
18601353 ACTGGTCGGAGAGGCATAATGCACAAG-TGAGGATCGGC-CTGATCCCCCTCTGCGTGCTACCGG
64 ACCGACCGGAGAGGCAGAATGCACAAGCCGAGGATAGGCTC-GATCCCCC-CTGCATGCTACCGA
* * * **
18601416 TCCCT-TTACCACAACCCTCGGT-TCAG-CTGGGG
127 T-CCTGCTACCGCAACCCTCGGTCT-GGTCT-GAT
* * * * *
18601448 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCGAACGCATGAAATAGGCGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCGAACGCACGAAACAAGCGTGCGGGCGCTCAA
** *
18601512 CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATAGGCTCGATCCCCCCTGCATGTTACCGATCC
65 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATAGGCTCGATCCCCCCTGCATGCTACCGATCC
18601577 TGCTACCGCAACCCTCGGTCTGGTCTGAT
130 TGCTACCGCAACCCTCGGTCTGGTCTGAT
* *
18601606 GTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTAGGAATGAACTCCATATGC
18601633 TTAGATTGGG
Statistics
Matches: 271, Mismatches: 55, Indels: 34
0.75 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 24 0.09
158 220 0.81
159 25 0.09
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCGAACGCACGAAACAAGCGTGCGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCACAAGCCGAGGATAGGCTCGATCCCCCCTGCATGCTACCGATCCT
GCTACCGCAACCCTCGGTCTGGTCTGAT
Found at i:18601647 original size:26 final size:26
Alignment explanation
Indices: 18601607--18601658 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18601597 TGGTCTGATG
18601607 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* * *
18601633 TTAGATTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
18601659 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:18602367 original size:26 final size:26
Alignment explanation
Indices: 18602329--18602381 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18602319 GGCTCAAACT
18602329 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18602355 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18602381 C
1 C
18602382 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18602908 original size:26 final size:26
Alignment explanation
Indices: 18602869--18602921 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18602859 CCGGTCCAAT
* *
18602869 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18602895 CTTAGACATA-GAATAAACTCCGTATG
1 CTTAGAC-TAGGAATAAACTCCGTATG
18602921 C
1 C
18602922 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:18603563 original size:159 final size:157
Alignment explanation
Indices: 18603053--18603563 Score: 500
Period size: 159 Copynumber: 3.3 Consensus size: 157
18603043 CTGGTTCGAT
* * * * * *
18603053 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAATCCATGAAACGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * ** *
18603117 CCGACCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTC
65 CCGACCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCT-TGCGTGCTGCCGGTC
* * *
18603182 TCGC-AGCCACAACCCTCGGTCCGATTGGGG
129 -CCCTA-CCACAACCCTCGATCCGACTGGGG
* * *
18603212 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGA-CGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
* * * * * * * *
18603276 CGGCCGGAGAGGCAGAATACACAAGCCAAGGATCGGCTCGGTCCCCC-TGCGTGCTGTC-GTAAC
66 CGACCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCTTGCGTGCTGCCGGT-CC
* * *** **
18603339 CCTA-CA-TACCGTCCCCCCTG-CAT-ATG
130 CCTACCACAACCCTCGATCC-GAC-TGGGG
* * *
18603365 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
* * * * *
18603430 CGATCGGAGAGGGAGAATGCACAAGTCGGGGATCGACCCGATCCCCCTTTGTGTGCTGCCGGTCC
66 CGACCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCC-TTGCGTGCTGCCGGTCC
18603495 CACTACCACAACCCTCGATCCGACTGGGG
130 C-CTACCACAACCCTCGATCCGACTGGGG
* *
18603524 CATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
18603564 CGATAATGAC
Statistics
Matches: 279, Mismatches: 59, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
153 61 0.22
154 46 0.16
155 4 0.01
156 21 0.08
157 5 0.02
158 47 0.17
159 94 0.34
160 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
CGACCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCTTGCGTGCTGCCGGTCCC
CTACCACAACCCTCGATCCGACTGGGG
Found at i:18603586 original size:159 final size:157
Alignment explanation
Indices: 18603053--18603633 Score: 498
Period size: 159 Copynumber: 3.7 Consensus size: 157
18603043 CTGGTTCGAT
* * * * *
18603053 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAATCCATGAAACGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* ** * *
18603117 CCGACCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTC
65 CCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCT-TGCGTGCTGCCGGTC
* * *
18603182 TCGC-AGCCACAACCCTCGGTCCGATTGGGG
129 -CCCTA-CCACAACCCTCGATCCGACTGGGG
* * * *
18603212 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGC-GACGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
18603276 CGGCCGGAGAGGCAGAATACACAAGCCAAGGATCGGCTCGGTCCCCC-TGCGTGCTGTC-GTAAC
66 CGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCTTGCGTGCTGCCGGT-CC
* * *** **
18603339 CCTA-CA-TACCGTCCCCCCTG-CAT-ATG
130 CCTACCACAACCCTCGATCC-GAC-TGGGG
* * * * * *
18603365 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
18603430 CGATCGGAGAGGGAGAATGCACAAGTCGGGGATCGACCCGATCCCCCTTTGTGTGCTGCCGGTCC
66 CGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCC-TTGCGTGCTGCCGGTCC
18603495 CACTACCACAACCCTCGATCCGACTGGGG
130 C-CTACCACAACCCTCGATCCGACTGGGG
* * * *
18603524 CATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGATAATGA-CGTACGGGCGCTCAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGAGCGTACGGGCGCTCAG
* * * * * * *
18603588 CCAACCGAAGAGGTAGAATTCATAAGCCGGGGATCAGCCCGGTCCC
65 CCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCC
18603634 TCCTACGTGC
Statistics
Matches: 329, Mismatches: 78, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
153 59 0.18
154 46 0.14
155 4 0.01
156 21 0.06
157 5 0.02
158 48 0.15
159 141 0.43
160 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.17
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCTTGCGTGCTGCCGGTCCC
CTACCACAACCCTCGATCCGACTGGGG
Found at i:18603930 original size:26 final size:26
Alignment explanation
Indices: 18603892--18603944 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18603882 CCGGTCCGAT
*
18603892 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
18603918 CTTAGACAT-GGAATAAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCTGTATG
18603944 C
1 C
18603945 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:18604115 original size:25 final size:25
Alignment explanation
Indices: 18604078--18604126 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
18604068 GATCTGATCA
18604078 TAGACTGGAATGAACTTCATATGCT
1 TAGACTGGAATGAACTTCATATGCT
* * *
18604103 TAGATTGGGATGAACTTCGTATGC
1 TAGACTGGAATGAACTTCATATGC
18604127 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (25 bp):
TAGACTGGAATGAACTTCATATGCT
Found at i:18604472 original size:26 final size:24
Alignment explanation
Indices: 18604435--18604484 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
18604425 CCTTGGTCTG
18604435 GTCCAATCTTAGAC-TAGGAATGAA
1 GTCCAATCTTAGACGT-GGAATGAA
18604459 GTCCATATGCTTAGACGTGGAATGAA
1 GTCCA-AT-CTTAGACGTGGAATGAA
18604485 CTTCGTATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 15 0.65
27 1 0.04
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (24 bp):
GTCCAATCTTAGACGTGGAATGAA
Found at i:18604883 original size:159 final size:158
Alignment explanation
Indices: 18604614--18604917 Score: 367
Period size: 159 Copynumber: 1.9 Consensus size: 158
18604604 CTGGTCTAAT
* * * *
18604614 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCACTCAGC
* * * * * * * *
18604679 CGGTCGAAGAGGCATAATGTGTAAGCCGAGGATCGGCCCGATCCCCCTCTTCGTGCTGTCAGTCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTGCCAATCC
*
18604744 CGCTGCCATAACCCTCGATCTGGCTGGGG
130 CGCTGCCACAACCCTCGATCTGGCTGGGG
* * *
18604773 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCACTCAG
* *** * *
18604837 CCGGCCGGAGAGGCAGAATGCGCAATTTGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
* *
18604902 TGCTGCCGCAACCCTC
130 CGCTGCCACAACCCTC
18604918 TATCCAGTCT
Statistics
Matches: 120, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 28 0.23
159 92 0.77
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCACTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCCC
GCTGCCACAACCCTCGATCTGGCTGGGG
Found at i:18605679 original size:26 final size:26
Alignment explanation
Indices: 18605641--18605693 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18605631 GGCTCAAAAT
18605641 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18605667 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18605693 C
1 C
18605694 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18606893 original size:26 final size:26
Alignment explanation
Indices: 18606864--18606913 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18606854 CCGATCCGAT
18606864 CTTAGAC-TGGGAATGAACTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
18606890 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
18606914 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:18607126 original size:354 final size:356
Alignment explanation
Indices: 18605984--18607144 Score: 1047
Period size: 354 Copynumber: 3.3 Consensus size: 356
18605974 CTGGCTGGGG
* * * * ** *
18605984 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAATCGGGCGTGCGGATGCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * * **
18606048 CCGATCGGAA-AGGCAGAATGCATAAGCCGGGGATCAACCCGGTCCC-CCTTGCGTGCTGTCGAT
65 CCGAAC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCTCCCTGCGTGCTACCGAT
* * * * *
18606111 -CT--TGCT-G---T--T---GTAACCCTCGGTCTGATCCGATCTTAGACTCGAAATGAACTTCG
129 CCTACTGTTGGTCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCG
* * * ** *
18606164 TATGCTTAGA-ATTGGGATGAACTCCATATGCCTAAGTCAA-CTCACAAAATGAGCGTGCGGGCG
194 TATGCTTAGACA-TGGAATGAACTCCGTATGCCTAAGCCAACCT-ATGAAACGAGCGTGCGGGCG
* * * * * ** * *
18606227 CTCAGCCGGCCAGAGAGGCATAATGCGTAAGCCAGGGATCAGCTCGGTCCCCCTCTGCATGCTGT
257 CTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCC-CTGCGTGCTGT
* * * **
18606292 CGATGTCGCTGTCGATCTTGTTACCACAACCCTCGGTCCAGCTGGGA-
321 CGA--TC-CTG-C-A-------ATCACAACCCTCAGTCCAGATCCGAT
* * *
18606339 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18606403 CC-AACTAGAGAGGAAGAATGCACAAGCTGGGGATCGACCCGATCCCTCCCTGTGTGCTACCTAT
65 CCGAACGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCTCCCTGCGTGCTACCGAT
* * * *
18606467 CCTACTGTTGGTCCTACTGCCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTTCA
129 CCTACTGTTGGTCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCG
* * * * * * * *
18606532 TATGCTTAGACATGGAATAAACTCTGTATGCCTCAGCCATCCCATGAAACAAGTGTGTGGGCGCT
194 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCGCT
* * * * * *
18606597 CAACCGATCGGAGAGGTAGAATGCGCAAGCCGGGGACTGGCCTGGTCCCCGCTGCGTGCTGTCGA
259 CAGCCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGA
* * * *
18606662 TCCTGCTATCGCAACCCTCAGT-CTGATCTGAT
324 TCCTGCAATCACAACCCTCAGTCCAGATCCGAT
* * * *
18606694 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * **
18606759 TGATCGGAGAGGCAGAATACGCAAGCCGGGGATC-AGCTTGATCCC-CGCTGCGTGCTGTCGATC
66 CGAACGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCTCCCTGCGTGCTACCGATC
* * * *
18606822 TTGCTGTTGGTCCTACTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
130 CTACTGTTGGTCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGT
* * *
18606887 ACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTGTGAAACGAGCGTACGGGCGCTC
195 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCGCTC
*
18606952 AGCCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGAT
260 AGCCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGAT
*
18607017 CCTGCAATCACAACCCTTAGTCCAG-TCCGAT
325 CCTGCAATCACAACCCTCAGTCCAGATCCGAT
* * * * * *
18607048 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATACGGGCGTTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18607113 CGACCGAAGAGGCATAATGTGCAAGACGGGGA
66 CGAACGAAGAGGCAGAATGCGCAAGCCGGGGA
18607145 ACGGCTCGGT
Statistics
Matches: 649, Mismatches: 135, Indels: 45
0.78 0.16 0.05
Matches are distributed among these distances:
353 1 0.00
354 296 0.46
355 189 0.29
356 14 0.02
357 2 0.00
359 3 0.00
360 1 0.00
363 2 0.00
364 3 0.00
365 3 0.00
367 13 0.02
368 120 0.18
369 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (356 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGAACGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCTCCCTGCGTGCTACCGATCC
TACTGTTGGTCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTA
TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCGCTCA
GCCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
CTGCAATCACAACCCTCAGTCCAGATCCGAT
Found at i:18607155 original size:158 final size:157
Alignment explanation
Indices: 18606899--18607390 Score: 501
Period size: 158 Copynumber: 3.1 Consensus size: 157
18606889 GCTTAGACAT
** * *
18606899 GGAATGAACTCCGTATGCCTAAGCCAACCTGTGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGAAG
* * * ** *
18606964 AGGTAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCAATCACA
66 AGGCAGAATGCGCAAGCCGGGGATCGG-CCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCATA
18607029 ACCCTTAGTCCAGTCCGATCTTAGATTG
130 ACCCTTAGTCCAGTCCGATCTTAGATTG
* * * * * *
18607057 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATACGGGCGTTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGAAG
* * * * * * *
18607122 AGGCATAATGTGCAAGACGGGGAACGGCTCGGTCCCCCTCTGCATGCTATCGGTCCTGCTGCCAT
66 AGGCAGAATGCGCAAGCCGGGGATCGGC-CGGTCCCCC-CTGCGTGCTATCGATCCTGCTGTCAT
* * * * *
18607187 AACCC-TCGATCC-GACTGGA-GTTAGACAT-
129 AACCCTTAG-TCCAGTC-CGATCTTAGA-TTG
* * * * * * *
18607215 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGTCACTCAGCCAAATGGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCC-GATCGAA
*
18607280 -AGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGC-AGTCGATCCTACTGTCA
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCC-GGTCCCCCCTGCGTGCTA-TCGATCCTGCTGTCA
** *
18607343 TAACCCTCGGTCCAATCCGATCTTAGATTG
128 TAACCCTTAGTCCAGTCCGATCTTAGATTG
*
18607373 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
18607391 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 58, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 33 0.12
158 195 0.74
159 35 0.13
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGAAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCATAA
CCCTTAGTCCAGTCCGATCTTAGATTG
Found at i:18607400 original size:26 final size:26
Alignment explanation
Indices: 18607364--18607442 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
18607354 CCAATCCGAT
*
18607364 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
**
18607390 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18607416 CTTAGACT-AGAGATGAACTCTGTATG
1 CTTAGACTGGGA-ATGAACTCTGTATG
18607442 C
1 C
18607443 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18608145 original size:26 final size:26
Alignment explanation
Indices: 18608094--18608146 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18608084 CTGATTTGAT
*
18608094 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
18608120 CTTAGATTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
18608146 C
1 C
18608147 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:18615731 original size:158 final size:160
Alignment explanation
Indices: 18615374--18615782 Score: 450
Period size: 158 Copynumber: 2.6 Consensus size: 160
18615364 ACTCCGTATA
*
18615374 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCGCGTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-TCAG
* * * * * **
18615439 CCGGTCGGATGAGGCAGAATGCGCAAGTCAGGGATTGGTCCGATCCCCCCCAACGTGCTGTCGAT
65 CC-GACCGAAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCCAACGTGCTACCGAT
* * * * *
18615504 CCTGCTGTCGTCAACCCTCGATCTGATTCAAT
129 CCCGCTGCCATCAACCCTCGATCTGACTCAAG
* * *
18615536 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGC-CTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* **** * *
18615599 CCGACCGAAGAGGCATAATGCGCAAGTCAAGGATTGGCCCGATCCCCCTTTGCGTGTTACCGGTC
65 CCGACCGAAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCCAACGTGCTACCGATC
* * *
18615664 CCGCTGCCAT-AACCCTCGGTCTGGCT-AGGG
130 CCGCTGCCATCAACCCTCGATCTGACTCA-AG
* * * *
18615694 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** *
18615758 CGGTCGAAGAGGCAGAATGTGCAAG
66 CGACCGAAGAGGCAGAATGCGCAAG
18615783 CCGGGGATGG
Statistics
Matches: 206, Mismatches: 37, Indels: 12
0.81 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 84 0.41
159 61 0.30
160 5 0.02
161 2 0.01
162 53 0.26
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCCAACGTGCTACCGATCC
CGCTGCCATCAACCCTCGATCTGACTCAAG
Found at i:18615947 original size:13 final size:13
Alignment explanation
Indices: 18615929--18615955 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18615919 TGCACGCTCA
18615929 GTCGATCGGAGAG
1 GTCGATCGGAGAG
18615942 GTCGATCGGAGAG
1 GTCGATCGGAGAG
18615955 G
1 G
18615956 CATAATGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.48, T:0.15
Consensus pattern (13 bp):
GTCGATCGGAGAG
Found at i:18616257 original size:26 final size:26
Alignment explanation
Indices: 18616219--18616271 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18616209 TTGATCCGAT
* *
18616219 CTTAGACTGGGAAAGTACTCCATATG
1 CTTAGACTGGGAAAGAACTACATATG
*
18616245 CTTAGACAT-GGAATGAACTACATATG
1 CTTAGAC-TGGGAAAGAACTACATATG
18616271 C
1 C
18616272 CTCAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTACATATG
Found at i:18622761 original size:159 final size:159
Alignment explanation
Indices: 18622373--18622772 Score: 418
Period size: 159 Copynumber: 2.5 Consensus size: 159
18622363 ATCTTAGATT
* * *
18622373 GGGAATGAACTC-CGTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCGCTCAACCGGCTAG
1 GGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCGA-
* * ** *
18622437 AGAGGCAAAATGCGCAAGTCAGGGATTGGCCCGATCCCCCCCAACGTGCTGTCGATCTTACTGTC
65 AGAGGCAAAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCCAACGTGCTGTCCATCCCACTGCC
* * * * *
18622502 GTAACCCTCGGTCTGATCTAATCTTAGACC
130 ATAACCCTCGGTCTGAGCTAAGCATAGACA
* * * *
18622532 GGGAATGAACT-TCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCGA
1 GGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGG-CGA
* **** *
18622596 AGAGGCATAATGCGCAAGTCAAGGATTGGCCCGATCCCCCTTTGCGTG-T-TACCAGTCCCGCTG
65 AGAGGCAAAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCCAACGTGCTGT-CCA-TCCCACTG
*
18622659 CCATAACCCTCGGTCTG-GCTAGGGCATAGACA
128 CCATAACCCTCGGTCTGAGCTA-AGCATAGACA
* * *
18622691 TGGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAAC-AGGTGTGCGGGCGCTCAACGGGTCG
1 GGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCAACCGG-CG
* * *
18622754 AAAAGGCAGAATGTGCAAG
64 AAGAGGCAAAATGCGCAAG
18622773 CCGGGGATCG
Statistics
Matches: 199, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 7 0.04
159 187 0.94
160 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.19
Consensus pattern (159 bp):
GGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCGAA
GAGGCAAAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCCAACGTGCTGTCCATCCCACTGCCA
TAACCCTCGGTCTGAGCTAAGCATAGACA
Found at i:18623258 original size:26 final size:26
Alignment explanation
Indices: 18623220--18623272 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18623210 TTGATCCGAT
* *
18623220 CTTAGACTGGGAAAGTACTCCATATG
1 CTTAGACTGGGAAAGAACTACATATG
*
18623246 CTTAGACAT-GGAATGAACTACATATG
1 CTTAGAC-TGGGAAAGAACTACATATG
18623272 C
1 C
18623273 CTCAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTACATATG
Found at i:18623762 original size:26 final size:26
Alignment explanation
Indices: 18623721--18623773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18623711 CCGGTCTGAT
18623721 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
18623747 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
18623773 C
1 C
18623774 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18624131 original size:26 final size:26
Alignment explanation
Indices: 18624102--18624154 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18624092 CCGGTCCGAT
*
18624102 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
18624128 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
18624154 C
1 C
18624155 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:18624444 original size:158 final size:158
Alignment explanation
Indices: 18624143--18624463 Score: 367
Period size: 158 Copynumber: 2.0 Consensus size: 158
18624133 ACATGGAATA
* * *
18624143 AACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGAGCGCTCAGCCGACCGGAGAGGCAG
* * **
18624208 AATGCGCAAGCCAGGGACCGGCCCGGTCCCCCCTGTGTGCTGTCGATCTTGCTACCACAAACCTC
66 AATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGTGTGCTGTCGATCCCGCTACCACAAACCTC
* * * *
18624273 AGTTCGGTTCGATCTTAGACTGGGAAAG
131 AGATCGATCCGATCTTAGACTAGGAAAG
* * * * * *
18624301 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGAGCGTTGAGCCGGCCGGAGAGGCAT
1 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGAGCGCTCAGCCGACCGGAGAGGCAG
** * * * ** *
18624366 AATGCGCAAGCTGGGGATCGACCTGATCCCCCTTGTGTGCTGTCGATCCCGCTACCGTAATGCC-
66 AATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGTGTGCTGTCGATCCCGCTACCACAA-ACCT
* *
18624430 C-GATCTGATCCGATCTTCGACTAGGAATG
130 CAGATC-GATCCGATCTTAGACTAGGAAAG
18624459 AACTC
1 AACTC
18624464 AGTACGCTTA
Statistics
Matches: 134, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
157 3 0.02
158 129 0.96
159 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGAGCGCTCAGCCGACCGGAGAGGCAG
AATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGTGTGCTGTCGATCCCGCTACCACAAACCTC
AGATCGATCCGATCTTAGACTAGGAAAG
Found at i:18624849 original size:26 final size:26
Alignment explanation
Indices: 18624809--18624861 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18624799 CAGGTCCGAT
18624809 CTTAGAATGGCAATGAAC-TCTGTATG
1 CTTAGAATGGCAATGAACTTC-GTATG
18624835 CTTAGACATGG-AATGAACTTCGTATG
1 CTTAGA-ATGGCAATGAACTTCGTATG
18624861 C
1 C
18624862 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGCAATGAACTTCGTATG
Found at i:18625249 original size:159 final size:155
Alignment explanation
Indices: 18624834--18625279 Score: 387
Period size: 159 Copynumber: 2.8 Consensus size: 155
18624824 AACTCTGTAT
* * *
18624834 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGA-ACGTGTGGGCGCTTA
1 GCTTAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAACGAGA-GTGCGGGCGC-TC
* * * * ** *
18624898 ACCGGTCAGAAAGGCAGAATGTGCAAGCCAGGGACCGGCCTGATCCCCCCTACGTGCTATCGATC
63 AGCGGTCGGAGAGGCAGAATGTGCAAGCCA-GGATCAACCCGATCCCCCCTACGTGCTATCGATC
* ** * **
18624963 TTGCTGCCGTAACCCTCGGTCTGGTTCGA
127 TCGCTGCCACAACCCTCAGTCTGACTCGA
* ** * * * *
18624992 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCA
* * * * * *
18625056 GCAGG-CTGGAGAGG-TGTAATGCGTAAACCAAGGATCAACCCGATCCCCCTCTGCGTGCTGTCG
64 GC-GGTC-GGAGAGGCAG-AATGTGCAAGCC-AGGATCAACCCGATCCCCC-CTACGTGCTATCG
* * *
18625119 GTCTCGCTGCCACAACCCTCAGTCTGACTGGG
124 ATCTCGCTGCCACAACCCTCAGTCTGACTCGA
*
18625151 GCTTAGACATGGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAG
* * * * **
18625216 TCGGTCGGAGAGGCAGAACGTGCAAGCCGAGGATCAGCTCGGTCCCCCCTGTGTGCTATCGATC
65 -CGGTCGGAGAGGCAGAATGTGCAAGCC-AGGATCAACCCGATCCCCCCTACGTGCTATCGATC
18625280 CTACTATCGC
Statistics
Matches: 224, Mismatches: 51, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
157 8 0.04
158 90 0.40
159 120 0.54
160 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGC
GGTCGGAGAGGCAGAATGTGCAAGCCAGGATCAACCCGATCCCCCCTACGTGCTATCGATCTCGC
TGCCACAACCCTCAGTCTGACTCGA
Found at i:18625498 original size:184 final size:184
Alignment explanation
Indices: 18625151--18625520 Score: 514
Period size: 184 Copynumber: 2.0 Consensus size: 184
18625141 TCTGACTGGG
*
18625151 GCTTAGACATGGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAG
* * * * **
18625216 TCGGTCGGAGAGGCAGAACGTGCAAGCCGAGGATCAGCTCGGTCCCCCCTGTGTGCTATCGATCC
66 TCGATCGAAGAGGCAGAACGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTATCGATCC
* * *
18625281 TACTATCGCAACCCTCGGTCCGATCTTATCTTAGACTGGGAATGATCTCCGTAT
131 TACTACCGCAACCCTCGATCCGATCTTATCTTAGACTGGGAATGAACTCCGTAT
*
18625335 GCTTAGTA-ATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTC
1 GCTTAG-ACATGGAACGAACTACC-TATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTC
* * *
18625398 AGTCGATCGAAGAGGTAGAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTATCGAT
64 AGTCGATCGAAGAGGCAGAACGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTATCGAT
* * * *
18625463 CCTACTGCCGTAACCCTCGATCTG-T-TTCAATCTTAGACTGGGAATGAACTCTGTAT
129 CCTACTACCGCAACCCTCGATCCGATCTT--ATCTTAGACTGGGAATGAACTCCGTAT
18625519 GC
1 GC
18625521 ATAAGTTAAC
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
182 2 0.01
183 3 0.02
184 158 0.96
185 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAG
TCGATCGAAGAGGCAGAACGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTATCGATCC
TACTACCGCAACCCTCGATCCGATCTTATCTTAGACTGGGAATGAACTCCGTAT
Found at i:18625591 original size:158 final size:155
Alignment explanation
Indices: 18625345--18625837 Score: 486
Period size: 158 Copynumber: 3.1 Consensus size: 155
18625335 GCTTAGTAAT
* *
18625345 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAGTCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGAAG
* * * *
18625410 AGGTAGAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTATCGATCCTACTGCCGTA
66 AGGCAGAATGCGCAAG-CAAGGATC-GCCCGGTCCCCCCTGCATGCTATCGATCCTACTGCCGCA
* *
18625475 ACCCTCGATCTGTTTCAATCTTAGACTG
129 ACCCTCGATCTG-ATCGATCTTAGACTG
* * ** * *
18625503 GGAATGAACTCTGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGAAG
* * * * * * * * *
18625568 AGGCATAATGCACAAGTCAAGGATCGACCCGATCCCCTTCTGCGTGCCACCGATCCCACTGCCAC
66 AGGCAGAATGCGCAAG-CAAGGATCG-CCCGGTCCCC-CCTGCATGCTATCGATCCTACTGCCGC
* * * * ** *
18625633 AACCCTGGATCCAGCTGGGGCTCAGACAT-
128 AACCCTCGAT-CTGATCGATCTTAGAC-TG
* * * *
18625662 GGAATGAACTGCC-TATGCCTAAGCCAACCGACGAAACGGGCGTGCGGGCGCTCAGTCGACCGGA
1 GGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGAA
* * * * * * *
18625726 GAGACAGAATGCGCAAGCTAGGGATTGGCCCGGTCCCCCCTGCATGATGTCAATCCTACTACCGC
65 GAGGCAGAATGCGCAAGC-AAGGA-TCGCCCGGTCCCCCCTGCATGCTATCGATCCTACTGCCGC
*
18625791 AACCCTCGGTCTGATCTGATCTTAGACTG
128 AACCCTCGATCTGATC-GATCTTAGACTG
18625820 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
18625838 TTAGACTGAG
Statistics
Matches: 261, Mismatches: 64, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
157 7 0.03
158 133 0.51
159 115 0.44
160 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (155 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGAAG
AGGCAGAATGCGCAAGCAAGGATCGCCCGGTCCCCCCTGCATGCTATCGATCCTACTGCCGCAAC
CCTCGATCTGATCGATCTTAGACTG
Found at i:18625719 original size:501 final size:500
Alignment explanation
Indices: 18624788--18625863 Score: 1311
Period size: 501 Copynumber: 2.1 Consensus size: 500
18624778 CCTACTGCTA
* * * * * * *
18624788 CAACCCTTGGTCAGGTCCGATCTTAGAATGGCAATGAACTCTGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGAATGAAC
* * * * *
18624853 TTCGTATGCCTAAGCCAACCCACGAAACGAACGTGTGGGCGCTTAACCGGTCAGAAAGGCAGAAT
65 TCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGATCAGAAAGGCAGAAT
* * * * * * *
18624918 GTGCAAGCCAGGGACCGGCCTGATCCCCCCTACGTGCTATCGATCTTGCTGCCGTAACCCTCGGT
130 GCGCAAGCCAGGGACCAGCCCGATCCCCCCTACATGCTATCGATCCTACTGCCGTAACCCTCGAT
* * * * *
18624983 CTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGTGTGCG
195 CTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTGCG
* ** **
18625048 GGCGCTGAGCAGGCTGGAGAGGTGTAATGCGTAAACCAAGGATCAACCCGATCCCCCTCTGCGTG
260 GGCGCTGAGCAGGCTGAAGAGGCATAATGCACAAACCAAGGATCAACCCGATCCCCCTCTGCGTG
*** * * * * *
18625113 CTGTCGGTCTCGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAACGAACTACCTATG
325 CCACCGATCCCACTGCCACAACCCTCAGTCAGACTGGGGCTCAGACATGGAACGAACTACCTATG
** * *
18625178 CCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAACGTGCAAGC
390 CCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGTCGACCGGAGAGACAGAACGCGCAAG-
* ** * * *
18625243 CGA-GGATCAGCTCGGTCCCCCCTGTGTGCTATCGATCCTACTATCG
454 CGAGGGATCAGCCCGGTCCCCCCTGCATGATATCAATCCTACTACCG
* *
18625289 CAACCCTCGGTCCGATCTTATCTTAGACTGGGAATGATCTCCGTATGCTTAGTAATGGAATGAAC
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG-AATGGAATGAAC
** *
18625354 TCCGTATGCCTAAGCCAACCCACGAAACGAGA-GTGCGGGCACTCAGTCGATC-GAAGAGGTAGA
65 TCCGTATGCCTAAGCCAACCCACGAAACGA-ACGTGCGGGCACTCAACCGATCAGAA-AGGCAGA
* * * *
18625417 ATGCGTAAGCC-GAGGATCAGCCCGGTCCCCCCTGCATGCTATCGATCCTACTGCCGTAACCCTC
128 ATGCGCAAGCCAG-GGACCAGCCCGATCCCCCCTACATGCTATCGATCCTACTGCCGTAACCCTC
* *
18625481 GATCTGTTTCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTTAACCCACGAAACGAGCGT
192 GATCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGT
* * ** * *
18625546 GCGGGCGCTGAGC-CGATCGAAGAGGCATAATGCACAAGTCAAGGATCGACCCGATCCCCTTCTG
257 GCGGGCGCTGAGCAGGCT-GAAGAGGCATAATGCACAAACCAAGGATCAACCCGATCCCCCTCTG
* * *
18625610 CGTGCCACCGATCCCACTGCCACAACCCT-GGATCCAG-CTGGGGCTCAGACATGGAATGAACTG
321 CGTGCCACCGATCCCACTGCCACAACCCTCAG-T-CAGACTGGGGCTCAGACATGGAACGAACTA
* * * *
18625673 CCTATGCCTAAGCCAACCGACGAAACGGGCGTGCGGGCGCTCAGTCGACCGGAGAGACAGAATGC
384 CCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGTCGACCGGAGAGACAGAACGC
* ** *
18625738 GCAAGCTAGGGATTGGCCCGGTCCCCCCTGCATGATGTCAATCCTACTACCG
449 GCAAGCGAGGGATCAGCCCGGTCCCCCCTGCATGATATCAATCCTACTACCG
* * *
18625790 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAAC
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATG-GAATGAAC
18625855 TCCGTATGC
65 TCCGTATGC
18625864 TTAGACTGGG
Statistics
Matches: 486, Mismatches: 80, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
500 12 0.02
501 470 0.97
502 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (500 bp):
CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGAATGAACT
CCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGATCAGAAAGGCAGAATG
CGCAAGCCAGGGACCAGCCCGATCCCCCCTACATGCTATCGATCCTACTGCCGTAACCCTCGATC
TGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTGCGG
GCGCTGAGCAGGCTGAAGAGGCATAATGCACAAACCAAGGATCAACCCGATCCCCCTCTGCGTGC
CACCGATCCCACTGCCACAACCCTCAGTCAGACTGGGGCTCAGACATGGAACGAACTACCTATGC
CTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGTCGACCGGAGAGACAGAACGCGCAAGCG
AGGGATCAGCCCGGTCCCCCCTGCATGATATCAATCCTACTACCG
Found at i:18625763 original size:159 final size:157
Alignment explanation
Indices: 18625343--18625771 Score: 416
Period size: 159 Copynumber: 2.7 Consensus size: 157
18625333 ATGCTTAGTA
* *
18625343 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAGTCGATCGA
1 ATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGA
* * * * * * *
18625408 AGAGGTAGAATGCGTAAGC-CGAGGATCAGCCCGGTCCCCCCTGCATGCTATCGATCCTACTGCC
65 AGAGGCAGAATGCGCAAGCTAG-GGATCGGCCCGGTCCCCCCTGCATGCCACCGATCCCACTGCC
** * * * *
18625472 GTAACCCTCGATCTGTTTCAATCTTAGAC
129 ACAACCCTCGATCAGTCTCAAGCTCAGAC
* * ** * *
18625501 -TGGGAATGAACTCTGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCG
1 AT-GGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCG
* * * * * * *
18625565 AAGAGGCATAATGCACAAG-TCAAGGATCGACCCGATCCCCTTCTGCGTGCCACCGATCCCACTG
64 AAGAGGCAGAATGCGCAAGCT-AGGGATCGGCCCGGTCCCC-CCTGCATGCCACCGATCCCACTG
* ***
18625629 CCACAACCCTGGATCCAG-CTGGGGCTCAGAC
127 CCACAACCCTCGAT-CAGTCTCAAGCTCAGAC
* * * *
18625660 ATGGAATGAACTGCCTATGCCTAAGCCAACCGACGAAACGGGCGTGCGGGCGCTCAGTCGACCGG
1 ATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGA
* *
18625725 AGAGACAGAATGCGCAAGCTAGGGATTGGCCCGGTCCCCCCTGCATG
65 AGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCCCTGCATG
18625772 ATGTCAATCC
Statistics
Matches: 211, Mismatches: 51, Indels: 18
0.75 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 88 0.42
159 117 0.55
160 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.17
Consensus pattern (157 bp):
ATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGAA
GAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCCCTGCATGCCACCGATCCCACTGCCAC
AACCCTCGATCAGTCTCAAGCTCAGAC
Found at i:18625852 original size:26 final size:25
Alignment explanation
Indices: 18625811--18625889 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
18625801 CTGATCTGAT
18625811 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
18625837 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTG-GGATGAACTCCGTATG
*
18625863 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
18625889 C
1 C
18625890 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
26 47 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:18626388 original size:159 final size:158
Alignment explanation
Indices: 18626031--18626397 Score: 425
Period size: 158 Copynumber: 2.3 Consensus size: 158
18626021 GGTCCGGCTC
* * * * *
18626031 GGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACCAGCGTTCGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATTCAGGCGCTC
* * * * *
18626096 AGCCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCTCTTGCGTACTGTCAAT
66 AGCCAACCGGAGAGGCAGAATGTGCAAGCAGAGGATCGACCCGATCCCCCTTACGTACTCTCAAT
* * *
18626161 CTTGCTACCGCAACCCTCAGTCTAGTCT
131 CTCGCTACCACAACCCTCAGTCTAGACT
** * * * *
18626189 GATCTTAGAC-TAGGAACGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATTTAGGCGTT
1 GGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATTCAGGCGCT
* * * * *
18626253 GAGCCAACCGGAGAGGCATAATGTGCAAGCAGGGGATCGACCTGATCCCCCTCTACGTGCTACT-
65 CAGCCAACCGGAGAGGCAGAATGTGCAAGCAGAGGATCGACCCGATCCCCCT-TACGTACT-CTC
** *
18626317 GGTCTCGCTACCACAACCCTCAGT-TCGACT
128 AATCTCGCTACCACAACCCTCAGTCTAGACT
*
18626347 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACG
1 -GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACG
18626398 GGTGTGTGGG
Statistics
Matches: 172, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 100 0.58
159 69 0.40
160 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (158 bp):
GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATTCAGGCGCTC
AGCCAACCGGAGAGGCAGAATGTGCAAGCAGAGGATCGACCCGATCCCCCTTACGTACTCTCAAT
CTCGCTACCACAACCCTCAGTCTAGACT
Found at i:18626429 original size:159 final size:157
Alignment explanation
Indices: 18626031--18626463 Score: 444
Period size: 159 Copynumber: 2.7 Consensus size: 157
18626021 GGTCCGGCTC
* * *
18626031 GGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACCAGCGTTCGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTT-GGGCGCTC
* * * *
18626096 AGCCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCTCTTGCGTACTGTCAAT
65 AGCCGACCGGAGAGGCAGAATGTGCAAGCAGAGGATCGACCCGATCCCCCTTACGTACTCTCAAT
* * *
18626161 CTTGCTACCGCAACCCTCAGTCTAGTCT
130 CTCGCTACCACAACCCTCAGTCTAGACT
** * * * * *
18626189 GATCTTAGAC-TAGGAACGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATTTAGGCGTT
1 GGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGC-GTTGGGCGCT
* * * * * *
18626253 GAGCCAACCGGAGAGGCATAATGTGCAAGCAGGGGATCGACCTGATCCCCCTCTACGTGCTACT-
64 CAGCCGACCGGAGAGGCAGAATGTGCAAGCAGAGGATCGACCCGATCCCCCT-TACGTACT-CTC
** *
18626317 GGTCTCGCTACCACAACCCTCAGT-TCGACT
127 AATCTCGCTACCACAACCCTCAGTCTAGACT
* * * *
18626347 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGTGGGCACT
1 -GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGT-TGGGCGCT
* * * *
18626412 CAGCCGACCGAAAAGGCAGAATGCGTAAGTCAG-GGATC-AGCCCGATCCCCCT
64 CAGCCGACCGGAGAGGCAGAATGTGCAAG-CAGAGGATCGA-CCCGATCCCCCT
18626464 GCATGCTGTG
Statistics
Matches: 221, Mismatches: 45, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 100 0.45
159 115 0.52
160 5 0.02
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTTGGGCGCTCA
GCCGACCGGAGAGGCAGAATGTGCAAGCAGAGGATCGACCCGATCCCCCTTACGTACTCTCAATC
TCGCTACCACAACCCTCAGTCTAGACT
Found at i:18628767 original size:158 final size:161
Alignment explanation
Indices: 18628253--18629084 Score: 552
Period size: 158 Copynumber: 5.2 Consensus size: 161
18628243 GTCACTCAAA
* * **
18628253 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGTGGGTGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCACTCA
* ** * * **
18628318 GTCGACCGAAGAGGCAGAATGTGCAAGTC-AGGGATCGGCCC-AGTGCCCC-CTGCGTGCTATCG
66 GCCGACCGAAGAGGCAGAATGCACAAGTCGAGGGATCGGCCCGA-TCCCCCTCTACGTGCTGCCG
*
18628380 ATCTTGCTATCGCAACCCTCAGTCCGGT-TCG
130 ATCCTGCTATCGCAACCCTCAGTCCGGTCTCG
* ** * * * * * *
18628411 ATCTTAGACTAGGAATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGCATGTGGGCACTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCACTCA
* * * * * * *
18628476 GCTGACCGAAAAGGC-GTAATGCGCAAGCCG-GGGATCGGCTCGGTCCCCCTCTTCGTGCTGCCG
66 GCCGACCGAAGAGGCAG-AATGCACAAGTCGAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCG
* * * * * * *
18628539 GTCCCGCTACCACAACCCTCGGTCCAG-CTGG
130 ATCCTGCTATCGCAACCCTCAGTCCGGTCTCG
** * * *
18628570 GGCTTAGACAT-GGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCACT
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGAGCGTGCGGGCACT
** * *
18628633 CAGCCGGTCGGAGAGGCAGAATGCACAAGTCGA-GGATTGGCCCGATCCCCC-CTACGTGCTGCC
64 CAGCCGACCGAAGAGGCAGAATGCACAAGTCGAGGGATCGGCCCGATCCCCCTCTACGTGCTGCC
* * *
18628696 GATCCTACTGTCGTAACCCTCAGTCCGGTCT-G
129 GATCCTGCTATCGCAACCCTCAGTCCGGTCTCG
* * * * * *
18628728 ATCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCTACGAAATGAGCGTAC-GGCACTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCACTCA
** * * *
18628792 GCCGATTGGAGAGGCATAATGCACAAG-CCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGA
66 GCCGACCGAAGAGGCAGAATGCACAAGTCGAGGGATCGGCCCGATCCCCCTCTA--------CG-
* * * * *
18628856 TCCCGCTGCCGATCCTGCTACCACAACCCTCGGTTCGGT-TGG
122 T---GCTGCCGATCCTGCTATCGCAACCCTCAGTCCGGTCTCG
** * * * **
18628898 GGCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCACTC
* ** * * * ** * **
18628962 AGCC-AGTCGAAGAGGCAGAATGCGTAAGCCG-GGGATCGGCTCGGTCCCCC-CTATATCCTATC
65 AGCCGA-CCGAAGAGGCAGAATGCACAAGTCGAGGGATCGGCCCGATCCCCCTCTACGTGCTGCC
*** * * * *
18629024 GATCCTGCCCCCCGTAACCCTCGGTTCAGTCT-G
129 GATCCTG-CTATCGCAACCCTCAGTCCGGTCTCG
*
18629057 ATCTTAGACTGGGAATGAACTCTGTATG
1 ATCTTAGACTGGGAATGAACTCCGTATG
18629085 ATTCGATATG
Statistics
Matches: 522, Mismatches: 118, Indels: 67
0.74 0.17 0.09
Matches are distributed among these distances:
156 2 0.00
157 53 0.10
158 176 0.34
159 157 0.30
160 5 0.01
161 1 0.00
166 2 0.00
167 1 0.00
169 1 0.00
170 79 0.15
171 44 0.08
172 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (161 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCACTCA
GCCGACCGAAGAGGCAGAATGCACAAGTCGAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGA
TCCTGCTATCGCAACCCTCAGTCCGGTCTCG
Found at i:18629029 original size:328 final size:315
Alignment explanation
Indices: 18628255--18629077 Score: 862
Period size: 317 Copynumber: 2.6 Consensus size: 315
18628245 CACTCAAAAT
* * *
18628255 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGTGGGTGCTCAG
1 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * *
18628319 TCGACCGAAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCAGTGCCCCCTGCGTGCTATCGATCT
65 CCG-TCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCC
* * * *
18628384 TGCTATCGCAACCCTCAGTCCGGT-TCGATCTTAGACTAGGAATGAACTTTGTATGCATAAGTCA
129 TACTATCGTAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
* * * * * *
18628448 ACCCACGAAACGAGCATGTGGGCACTGAGCTGACCGAAAAGGCGTAATGCGCAAGCCGGGGATCG
193 ACCCACGAAACGAGCA-GTCGGCACTCAGCCGACCGAAAAGGCATAATGCACAAGCCAGGGATCG
* * *
18628513 GCTCGGTCCCCCTCTTCGTGCTGCCGGTCCCGCTACCACAACCCTCGGTCCAGCTGGGG
257 GCCCGATCCCCCTCTTCGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCAGCTGGGG
* * **
18628572 CTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGCACTCAG
1 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGTGCTCAG
* * * * * **
18628636 CCGGTCGGAGAGGCAGAATGCACAAGTCGAGGATTGGCCCGATCCCCCCTACGTGCTGCCGATCC
65 CC-GTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCC
* * *
18628701 TACTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAA
129 TACTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
* * ** * *
18628766 CCTACGAAATGAGC-GTACGGCACTCAGCCGATTGGAGAGGCATAATGCACAAGCCAGGGATCGG
194 CCCACGAAACGAGCAGT-CGGCACTCAGCCGACCGAAAAGGCATAATGCACAAGCCAGGGATCGG
* * * *
18628830 CCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCGATCCTGCTACCACAACCCTCGGTTCGGT
258 CCCGAT--CCC-C--C-T-CT-TCG-T---GCTGCCGATCCCGCTACCACAACCCTCGGTCCAGC
18628895 TGGGG
311 TGGGG
* *
18628900 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * ** *
18628965 CAGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTATATCCTATCGATCCT
66 C-GTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCT
* *** * * *
18629030 GCCCCCCGTAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACT
130 -ACTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT
18629078 CTGTATGATT
Statistics
Matches: 412, Mismatches: 75, Indels: 26
0.80 0.15 0.05
Matches are distributed among these distances:
315 2 0.00
316 42 0.10
317 170 0.41
318 6 0.01
319 1 0.00
321 1 0.00
322 1 0.00
323 2 0.00
324 3 0.01
325 1 0.00
328 143 0.35
329 40 0.10
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (315 bp):
CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTA
CTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACC
CACGAAACGAGCAGTCGGCACTCAGCCGACCGAAAAGGCATAATGCACAAGCCAGGGATCGGCCC
GATCCCCCTCTTCGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCAGCTGGGG
Found at i:18629263 original size:187 final size:185
Alignment explanation
Indices: 18628907--18629271 Score: 425
Period size: 189 Copynumber: 2.0 Consensus size: 185
18628897 GGGCTTAGAC
* *
18628907 ATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCCAGTCGA
1 ATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTCAACCAGTCGA
* * *
18628972 AGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTATATCCTATCGATCCTGCCCCCC
66 AGAGGCAGAATGCGTAAGCCAGGGATCGGCTCGATCCCCCCTATATCCTATCGATCCTGCCCACC
* *
18629037 GTAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGATTCGAT
131 GTAACCCTCGATTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGATTCGAT
* * * * * * *
18629092 ATGGAATGAACTTCGTATGCCTATGCCAACCCACAAAACGGGCGTGCGTCCGAGTGCTCAATCGG
1 ATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACG---G-GTGCTCAACCAG
* * * *
18629157 TC-AGAGAGGCAGAATGCGTAAGCCAGGGATTGGCTCGAT-CCCCCTATGTGCTGTCGATCCTG-
62 TCGA-AGAGGCAGAATGCGTAAGCCAGGGATCGGCTCGATCCCCCCTATATCCTATCGATCCTGC
* * * * *
18629219 CTACTGTAACCCTTGA-TCTGGT-TCGATCTTAGACTGGTAATGAACTCCGTATG
126 CCACCGTAACCCTCGATTC-AGTCT-GATCTTAGACTGGGAATGAACTCCGTATG
18629272 CCTAAGTCAA
Statistics
Matches: 150, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
185 42 0.28
186 3 0.02
187 40 0.27
188 22 0.15
189 43 0.29
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (185 bp):
ATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTCAACCAGTCGA
AGAGGCAGAATGCGTAAGCCAGGGATCGGCTCGATCCCCCCTATATCCTATCGATCCTGCCCACC
GTAACCCTCGATTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGATTCGAT
Found at i:18630642 original size:26 final size:26
Alignment explanation
Indices: 18630601--18630653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18630591 CCAGTTCGAT
* *
18630601 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18630627 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18630653 C
1 C
18630654 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18630769 original size:12 final size:12
Alignment explanation
Indices: 18630754--18630796 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
18630744 GCTACCGATC
18630754 CTGCTGCTGGTT
1 CTGCTGCTGGTT
* * *
18630766 CTGCTGCCGATC
1 CTGCTGCTGGTT
18630778 CTGCTGCTGGTT
1 CTGCTGCTGGTT
*
18630790 CTACTGC
1 CTGCTGC
18630797 CACCAGCCTC
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.33, G:0.28, T:0.35
Consensus pattern (12 bp):
CTGCTGCTGGTT
Found at i:18630775 original size:24 final size:24
Alignment explanation
Indices: 18630743--18630797 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
18630733 TCCCCCTGCA
*
18630743 TGCTACCGATCCTGCTGCTGGTTC
1 TGCTGCCGATCCTGCTGCTGGTTC
18630767 TGCTGCCGATCCTGCTGCTGGTTC
1 TGCTGCCGATCCTGCTGCTGGTTC
*
18630791 TACTGCC
1 TGCTGCC
18630798 ACCAGCCTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.07, C:0.35, G:0.25, T:0.33
Consensus pattern (24 bp):
TGCTGCCGATCCTGCTGCTGGTTC
Found at i:18631355 original size:26 final size:26
Alignment explanation
Indices: 18631319--18631371 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18631309 CCAGTCTGAT
*
18631319 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
18631345 CTTAGATTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18631371 C
1 C
18631372 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18633499 original size:26 final size:26
Alignment explanation
Indices: 18633462--18633512 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18633452 CGATCTGATC
*
18633462 TTAGACTGGGAATGAAGTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
18633488 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
18633513 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:18633756 original size:159 final size:157
Alignment explanation
Indices: 18633488--18633787 Score: 359
Period size: 159 Copynumber: 1.9 Consensus size: 157
18633478 GTCCATATGG
* * * * *
18633488 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGAGCATACGGGCACTAAGCC
* * * * ** * * *
18633553 GGCTGGAGAGGCATAATGTGCAAGTCGGGGATCGACCCGATCCCCCT-CTACGTGCTGTCGATCC
66 GACCGAAGAGGCAGAATACGCAAGCCAGGGACCGACCCGATCCCCCTGC-A--TGCTGTCGATCC
*
18633617 CGCTGCCACAACCCGTAGTTCTGCTGGGGC
128 CACTGCCACAACCCGTAGTTCTGCTGGGGC
* * * *
18633647 TTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCATGAAATGGGCATACGGGCACTTAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGAGCATACGGGCACTAAGCC
* * *
18633712 GACCGAAGAGGCAGAATACGCAAGCCAGGGACCGATCCGGTCCCCCTGCATGCTGTCGATCCTAC
66 GACCGAAGAGGCAGAATACGCAAGCCAGGGACCGACCCGATCCCCCTGCATGCTGTCGATCCCAC
*
18633777 TGCCGCAACCC
131 TGCCACAACCC
18633788 TCGATCCGGT
Statistics
Matches: 117, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
157 23 0.20
159 93 0.79
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGAGCATACGGGCACTAAGCC
GACCGAAGAGGCAGAATACGCAAGCCAGGGACCGACCCGATCCCCCTGCATGCTGTCGATCCCAC
TGCCACAACCCGTAGTTCTGCTGGGGC
Found at i:18634110 original size:526 final size:520
Alignment explanation
Indices: 18632441--18634110 Score: 1536
Period size: 526 Copynumber: 3.2 Consensus size: 520
18632431 CTCCATATGT
* *
18632441 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTAAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCC
* * * *
18632506 GGCTGGAGAGGCATAATGCGCAAGTCGGGGATTGACCCGATCCCCCTCTACGTGCTGTCGATCCC
66 GGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCC
* * * *
18632571 GCTACCACAACCCTTAGTTCTGCTGGGATTAGACATGGAATAAACTCCCTATGCGTAAGTCAACC
131 GCTGCCACAACCCTTAGTTCTGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACC
* * * * **
18632636 CACAAATGTA-CGTACGGGTACTTAGCTGGCCGAAGAGGCAGAATACGTAAGCCAAAGATCGATC
196 CAGAAATG-AGCGTACGGGCACTTAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGATCGATC
* *
18632700 CGGTCCCCCTGGCATGCTGTCAATCCTACTGCCGCAA-CCTCGATCC-GATCTGATCTTAGACTG
260 CGGTCCCCCT-GCATGCTGTCGATCCTACTGCCGCAACCCTCGATCCGGTTCTGATCTTAGACT-
* **
18632763 GGAATGAACTTCGTATGCTTAGACTGCGAATGACCTCTGTATGCCTAAGCCAACCCATGAAACGA
323 GGAATGAACTTCGTATGCTTAGACTGCGGATGACCTCCATATGCCTAAGCCAACCCATGAAACGA
* *
18632828 G-GTGCAGGTGCTCAACCGGCTCGGAGAGGCCGACCGGAGAGACATAATGCATAAG-CGGGGATC
388 GCGTGCAGGCGCTCAACC-GATCGGAGAGG-CGA-C--AGAGACATAATGCATAAGCCGGGGATC
* * * * *
18632891 AACCCGATCCCCCTCTACATGCTGCCGATCCCACTGCCGGTCCTGCTACCACAACCCTCGGTTCG
448 AGCCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGGTTCG
18632956 ACTGGGGC
513 ACTGGGGC
* * * *
18632964 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGAGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCC
* * * * *
18633029 GGCTAGAAAGGCAGAATGCACAAGCCAGGGA-CTGACCCGGT-CCCC-CTATGTGCTGTCGATCC
66 GGCTGGAGAGGCAGAATGCACAAGCCGGGGATC-GACCCGATCCCCCTCTACGTGCTGTCGATCC
* * ** * * * ** * *
18633091 TGCGGCCGTAACCCTTGGTTCGGTCCGATCTTAGAC-TGAGAATGAAGTCCGTATGCCTAAGTCA
130 CGCTGCCACAACCCTTAGTTCTG-CTGGGCTTAGACATG-GAATGAACTCCCTATGCCTAAGTCA
* * * * * * * * * *
18633155 ATCCACGAAACGAGCGTTCGGGCACTGAGTCGGCCGGAGAGGCATAATGCCCAAGCTAGGGATC-
193 ACCCA-GAAATGAGCGTACGGGCACTTAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGATCG
* * * * * *
18633219 AGTTCGATCCCCCT-C-TGC-GT-G----T--TGCCG-ATCCCACTG-T-CGGTTCTGCTACCAT
257 A-TCCGGTCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTC-GATCCGGTTCTG--ATCTT
*** * * * * * *
18633271 A-ACCCTCGGTCCG-AC-TAG--GGCTTAGACAT-TGGAAGAACTCCATATGCCTGAGCCAACCC
318 AGA--CT-GGAATGAACTTCGTATGCTTAGAC-TGCGGATGACCTCCATATGCCTAAGCCAACCC
* * * *
18633330 ACGAAATGAGCGTGC-GAGCGCTCAGCCGATCGGAGA-G-G-C--AGA-AT-GTG--TAAGCCGG
379 ATGAAACGAGCGTGCAG-GCGCTCAACCGATCGGAGAGGCGACAGAGACATAATGCATAAGCCGG
* * *** * * ** **
18633385 GGATCGGCCCGGTCCCCC-CTGCGTGCTATTAATCCTGCTACCGGTCCTGCTGTCGTAACCTTCA
443 GGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACC--C-
*
18633449 GTTCGATCTGATCTTAGACTGGGAATGAAGTCC
505 --TCG----G---TTCGACT-GG---G--G--C
18633482 ATATGGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
1 ------TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* ** *
18633547 TAAGCCGGCTGGAGAGGCATAATGTGCAAGTCGGGGATCGACCCGATCCCCCTCTACGTGCTGTC
60 TAAGCCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTC
*
18633612 GATCCCGCTGCCACAACCCGTAGTTCTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
125 GATCCCGCTGCCACAACCCTTAGTTCTGCT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * *
18633677 GACAACCCATGAAATGGGCATACGGGCACTTAGCCGACCGAAGAGGCAGAATACGCAAGCCAGGG
189 GTCAACCCA-GAAATGAGCGTACGGGCACTTAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGG
*
18633742 ACCGATCCGGTCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTCGATCCGGTTC-GATCTT
253 ATCGATCCGGTCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTCGATCCGGTTCTGATCTT
* *
18633806 AGACTGGAAATGAACTTCGTATGCTTAGACTGGGGATGACCTCCATATGCCTAAGTCAACCCATG
318 AGACTGG-AATGAACTTCGTATGCTTAGACTGCGGATGACCTCCATATGCCTAAGCCAACCCATG
* *
18633871 AAACGAGCGTGCAGGCACTCAACC-AGTCGGAGAGGTCGATCAAAGAGACATAATGCACAAGCCG
382 AAACGAGCGTGCAGGCGCTCAACCGA-TCGGAGAGG-CGA-C--AGAGACATAATGCATAAGCCG
*
18633935 GGGATCAGCCCTATCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTC
442 GGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTC
18634000 GGTTCGACTGGGGC
507 GGTTCGACTGGGGC
* * * * *
18634014 TTAGACATGGATTGAACTTCGTATGCCTAAGCCAAACCACGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCC
* *
18634079 -GATCGGAGAGGTAGAATGCACAAGCCGGGGAT
66 GGCT-GGAGAGGCAGAATGCACAAGCCGGGGAT
18634111 AGGCCTGATC
Statistics
Matches: 884, Mismatches: 177, Indels: 169
0.72 0.14 0.14
Matches are distributed among these distances:
498 33 0.04
499 18 0.02
500 3 0.00
501 2 0.00
502 3 0.00
503 3 0.00
506 1 0.00
507 1 0.00
508 1 0.00
510 7 0.01
511 52 0.06
512 27 0.03
513 4 0.00
514 8 0.01
515 5 0.01
516 1 0.00
518 1 0.00
519 2 0.00
520 3 0.00
521 35 0.04
522 39 0.04
523 142 0.16
524 92 0.10
525 8 0.01
526 204 0.23
527 4 0.00
528 3 0.00
529 2 0.00
530 1 0.00
532 1 0.00
533 2 0.00
534 5 0.01
535 6 0.01
536 10 0.01
537 9 0.01
538 67 0.08
539 4 0.00
540 6 0.01
541 1 0.00
543 2 0.00
547 6 0.01
548 2 0.00
549 2 0.00
550 1 0.00
551 22 0.02
552 33 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (520 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCC
GGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCC
GCTGCCACAACCCTTAGTTCTGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACC
CAGAAATGAGCGTACGGGCACTTAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGATCGATCC
GGTCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTCGATCCGGTTCTGATCTTAGACTGGA
ATGAACTTCGTATGCTTAGACTGCGGATGACCTCCATATGCCTAAGCCAACCCATGAAACGAGCG
TGCAGGCGCTCAACCGATCGGAGAGGCGACAGAGACATAATGCATAAGCCGGGGATCAGCCCGAT
CCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGGTTCGACTGGGGC
Found at i:18635626 original size:159 final size:156
Alignment explanation
Indices: 18635231--18635734 Score: 385
Period size: 159 Copynumber: 3.2 Consensus size: 156
18635221 AACTCTGTAT
* * * *
18635231 GCTTAGACATGAAATGAACTCTGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGG-GCTCAG
*** * * * *
18635296 CCGGTCGGAGAGGCAAAATGCGAAAG-CCAGGGATCGGCCTGGTCTCCCCCTACGTGCTGTCGAT
65 CAACT-GGAGAGGCAAAATGTGAAAGTCGA-GGATCGGCCCGGTC-CCCCCTACGTGCTGCCGAT
* * *
18635360 CCTGCTGTCGCAACCCTTGGTCCGGTCTGA
127 CCTGCTGCCACAACCCTTAGTCCGGTCTGA
* * * *
18635390 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGC-GGGCATTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGC--T-
* * * * * * * * *
18635453 AACCGACCGAAGAGGCATAATGTGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGG
62 CAGCAACTGGAGAGGCAAAATGTGAAAGTCGAGGATCGGCCCGGTCCCCC-CTACGTGCTGCCGA
* *
18635518 T-CTCGCTGCCACAACCCTTAGTCTGGT-TGGG
126 TCCT-GCTGCCACAACCCTTAGTCCGGTCT-GA
* * *
18635549 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGG-GCTCAG
* * * * * * * *
18635614 CAAACTGGAGAGGCAGAAT-TCGTAAGTCGAGGATCAGCTCGGTCCCCACTGA-TTGTTGTCGAT
65 C-AACTGGAGAGGCAAAATGT-GAAAGTCGAGGATCGGCCCGGTCCCCCCT-ACGTGCTGCCGAT
* * ** *
18635677 CCTACTGCCGCAACCCTCGGTCCGATCTGA
127 CCTGCTGCCACAACCCTTAGTCCGGTCTGA
* *
18635707 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18635735 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 60, Indels: 35
0.74 0.17 0.10
Matches are distributed among these distances:
157 3 0.01
158 63 0.24
159 193 0.72
160 7 0.03
161 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGCTCAGC
AACTGGAGAGGCAAAATGTGAAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTG
CTGCCACAACCCTTAGTCCGGTCTGA
Found at i:18635737 original size:26 final size:26
Alignment explanation
Indices: 18635708--18635760 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18635698 CCGATCTGAT
18635708 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18635734 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18635760 C
1 C
18635761 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18636035 original size:26 final size:25
Alignment explanation
Indices: 18635987--18636038 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
18635977 CTCAGCCGAT
*
18635987 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGAAATGAACTCCGTATG
*
18636012 CTTAGACTGAAGATGAACTTCGTATG
1 CTTAGACTGAA-ATGAACTCCGTATG
18636038 C
1 C
18636039 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGAAATGAACTCCGTATG
Found at i:18638993 original size:25 final size:26
Alignment explanation
Indices: 18638944--18638995 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
18638934 CCAGTCTGAT
*
18638944 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18638970 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18638995 C
1 C
18638996 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18639691 original size:26 final size:25
Alignment explanation
Indices: 18639653--18639704 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
18639643 GCTCAAAAAT
18639653 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCC-TATG
18639679 CTTAGACAT-GGAATGAACTCCTATG
1 CTTAGAC-TGGGAATGAACTCCTATG
18639704 C
1 C
18639705 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 19 0.76
27 1 0.04
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCTATG
Found at i:18640915 original size:26 final size:26
Alignment explanation
Indices: 18640886--18640935 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
18640876 CGCGTCCGAT
18640886 CTTAGAC-TGGGAATGGAA-TCCGTACG
1 CTTAGACAT-GGAAT-GAACTCCGTACG
18640912 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
18640936 TGGCCTAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 3 0.14
26 18 0.82
27 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:18641394 original size:158 final size:156
Alignment explanation
Indices: 18640912--18641415 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 156
18640902 AATCCGTACG
* *
18640912 CTTAGACATGGAATGAACTCCGTATGGCCTAAGCCAA-CCGTGAAACGAGCG-TACGGCGCTCAG
1 CTTAGA-ATGGAATGAACTCCGTAT-GCCTAAGCCAACCCATGAAACGAGCGTTGCGGCGCTCAG
* * * * * * *
18640975 TCGGTCGGAGAAGGCAGAATGGCGTAAGCCAGGGATTGGCCCGAATCCCCCCTGCGTGCTATCCG
64 CCGATCGGAG-AGGCAGAATGGC--AAGCCGGGGATCGGCCTG-GTCCCCCCTGCATGCTAT-CG
** ** * *
18641040 ATCCTGCAATCGTAACCCTTAGTCCAATCCGAT
124 ATCCTGCTGTCGTAACCCTCGGTCTAGTCCGAT
* * * * *
18641073 CTTAGATTGCGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTATG-GGCGTTGAG
1 CTTAGAATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-TGCGGCGCTCAG
* * * * * *
18641137 CCGACCGAAGAGGCATAATGTGCAAGACGGGGAACGG-CTCGGTCCCCCTCTGCATGCTATCGGT
64 CCGATCGGAGAGGCAGAATG-GCAAGCCGGGGATCGGCCT-GGTCCCCC-CTGCATGCTATCGAT
* * * * *
18641201 CCTGCTGCCATAACCCTCGATCT-GACTGGA-
126 CCTGCTGTCGTAACCCTCGGTCTAGTC-CGAT
* * * * * *
18641231 GTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTTGCGGTCACTCAG
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTGCGG-CGCTCAG
* *
18641296 CCGATTGGAGAGGCAGAATGGCAAGCCGGGGATCGGCCTGGTCCCACCTGCATGC-AGTCGATCC
64 CCGATCGGAGAGGCAGAATGGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCATGCTA-TCGATCC
18641360 TGCTGTCGTAACCCTCGGTCTAGTCCGAT
128 TGCTGTCGTAACCCTCGGTCTAGTCCGAT
*
18641389 CTTAGATTAGGAATGAACTCCGTATGC
1 CTTAGAAT-GGAATGAACTCCGTATGC
18641416 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 58, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
156 1 0.00
157 37 0.14
158 89 0.33
159 51 0.19
160 32 0.12
161 43 0.16
162 15 0.06
163 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTGCGGCGCTCAGCC
GATCGGAGAGGCAGAATGGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCATGCTATCGATCCTGC
TGTCGTAACCCTCGGTCTAGTCCGAT
Done.