Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 168 of 402
Found at i:18641418 original size:26 final size:26
Alignment explanation
Indices: 18641389--18641467 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
18641379 CTAGTCCGAT
*
18641389 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18641415 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18641441 CTTAGACTA-GAGATGAACTCTGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
18641467 C
1 C
18641468 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18649718 original size:159 final size:159
Alignment explanation
Indices: 18649428--18649858 Score: 463
Period size: 159 Copynumber: 2.7 Consensus size: 159
18649418 ACTCCGTATA
* *
18649428 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * **
18649492 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGTCCGATCCCCCCCAACGTGCTGTCGATC
65 CCGGCCGAAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCCAACGTGCTACCGATC
* * * *
18649557 CTGCTGTCGCAACCCTCGATCTGATTCA-AT
130 CTGCTGCCACAACCCTCGATCTGACT-AGAG
* * * *
18649587 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* **** * *
18649652 CGGCCGAAGAGGCATAATGCGCAAGTCAAGGATTGGCCCGATCCCCCTTTGCGTGTTACCGGTCC
66 CGGCCGAAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCCAACGTGCTACCGATCC
* * * *
18649717 TGCTGCCATAACCCTCGGTCTGGCTAGGG
131 TGCTGCCACAACCCTCGATCTGACTAGAG
* * * * *
18649746 CTTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTTAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** * *
18649810 CGGGCCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCC
18649859 TACGTGCGGT
Statistics
Matches: 225, Mismatches: 44, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
158 3 0.01
159 222 0.99
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCCAACGTGCTACCGATCC
TGCTGCCACAACCCTCGATCTGACTAGAG
Found at i:18650820 original size:26 final size:26
Alignment explanation
Indices: 18650784--18650836 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18650774 CCGGTCTGAT
18650784 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
18650810 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18650836 C
1 C
18650837 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18651202 original size:26 final size:26
Alignment explanation
Indices: 18651164--18651216 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18651154 CCAGTTCGAT
*
18651164 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18651190 CTTAGAC-ATGGAATAAACTCCGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
18651216 C
1 C
18651217 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:18651261 original size:880 final size:876
Alignment explanation
Indices: 18649400--18651469 Score: 2357
Period size: 880 Copynumber: 2.3 Consensus size: 876
18649390 GTGGCTCAAA
*
18649400 ATCTTAGATTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** * ** *
18649465 TCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGT
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG-CTGGGACCGCT
* * * * * *
18649530 CCGATCCCCCCCAACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCTGATTCAATCTTAGACT
130 -CGGT-CCCCCCTACGTGCTGTCGATCCTGCTATCACAACCCTCGATTTGATTCGATCTTAGACT
* * * **
18649595 GGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTGCGGGCGCTGAGCCGGCCGAA
193 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGCCGGCCGAA
* * * * * *
18649660 GAGGCATAATGCGCAAGTC-AAGGATTGGCCCGATCCCCCTTTGCGTGTTACCGGTCCTGCTGCC
258 GAGGCATAATGCGCAAGCCGAA-GATAGGCCTGATCCCCCTCTGCGTGCTACCGGTCCCGCTGCC
* * * * * *
18649724 ATAACCCTCGGTCTGGCTAGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
322 ACAACCCTCGGCCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGA
* ** * * ** * * * *
18649789 AACGGGTGTGCGGGCACTTAGCGGGCCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTC
387 AAAGGACGTGCGGGCACTAACCAAGCAGAAGAGGCAGAATGCGCAAGCCGGGGATCCGCCCGATC
* * *
18649854 CCCCCTACGTGCGGTCGATCTTACGGTCGTAACCCTCGATCCGATCTGATCCTAGATTGGGAATG
452 CCCCCTACGTGCGGTCGATCCTACGGTCGTAACCCTCAATCCGATCTGATCCTAGACTGGGAATG
** * * * *
18649919 AACTCTGTATGCTTATACTGGGGATGAACTCCATTTGCCTATGTCAACCCATGAAACGAACATGC
517 AACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAACATGC
* * * * *
18649984 GGACGCTCAGTCAATCGGAGAGCTCGATCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGG
582 GGACGCTCAGTCAACCAGAGAGCTCGATCAGAGAGGCATAATACGAAAACCAGGGATCAGCCCGG
** *
18650049 TCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTTGGTTCGACTGGGGCTTAGACATGGA
647 TCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGA
* ** ** *
18650114 ATGAACTCTGTATGTGTAAGCCAACCGACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGATG
712 ATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGTGCGGGCGCAAAGCCGACCAGAGAGG
** * * * * * *
18650179 CAAAATGCGTAAGCCAGGGATCGGCTCGGTCCCCCTACATGTTGTCGATCATGCTGCTGGTCCTG
777 CAAAATGCACAAGCCAGGGATCGACCCAGTCCCCC-ACATGTAGTCGA-CATGAT-CTGATCCTG
* * **
18650244 CTGTCGGTCTTGCTGCCGCAACCCACGGTCTTGATCCG
839 CTGTCGGTCCTGCGGCCGCAACCCACGGTCCAGATCCG
* * * * * *
18650282 ATCTTAGATTGGGAAAGTACTCCATATGCTTAGACATCGAATGAACTCCGTATACCTCAGCCAAC
1 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * *
18650347 CCATGAAACGAGCGTGCAGGCATTCAGTCGACCGGAGAGGCAGAATGCGTAAGCTGGGACCAGCT
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGACC-GCT
* *
18650412 CGGTCCCCCCTACATGCTGTCGATCCTGCTATCACAACCCTCGATTTG-GTCTGATCTTAGACTG
130 CGGTCCCCCCTACGTGCTGTCGATCCTGCTATCACAACCCTCGATTTGATTC-GATCTTAGACTG
* * *
18650476 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGCATTGAGCCGGTC-AGA
194 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGCCGGCCGA-A
*
18650540 GAGGCATAATGCGCAAGCCGAAGATAGGCCTGATCCCCCTCTGTGTGCTACCGGTCCCGCTGCCA
258 GAGGCATAATGCGCAAGCCGAAGATAGGCCTGATCCCCCTCTGCGTGCTACCGGTCCCGCTGCCA
* *
18650605 CAACCTTCGGCCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAA
323 CAACCCTCGGCCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAA
** * *
18650670 AAGGACGTGCGGGCACTCAACCAATTAG-AGAGGCAGATTGCGCAAGTCGGGGATCCGCCCGATC
388 AAGGACGTGCGGGCACT-AACCAAGCAGAAGAGGCAGAATGCGCAAGCCGGGGATCCGCCCGATC
* * * * * *
18650734 CCTCCTACGTGCTGTCGATCCTGCTGTCGTAACCCTCAATCCGGTCTGATCTTAGACTGGGAATG
452 CCCCCTACGTGCGGTCGATCCTACGGTCGTAACCCTCAATCCGATCTGATCCTAGACTGGGAATG
* * ***
18650799 AACTCCATATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGC
517 AACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAACATGC
** * * * * *
18650864 GGGTGCTCAGTCGACCAGAGAGGC-CAGTTGA-AGAGGCATAATATGAAAACGA-GGATCAGCCC
582 GGACGCTCAGTCAACCAGAGA-GCTC-GATCAGAGAGGCATAATACGAAAACCAGGGATCAGCCC
* * *
18650926 GGTCCCCCTCTATGTGCTGTCGATCCCACTACCGATCCTGCTGCCAGAACCCTTGGTCCGGCTGG
645 GGTCCCCCTC----TGC-GT-G------CTACCGATCCTGCTACCACAACCCTTGGTCCGACTGG
* *
18650991 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGTGT-CTGGGCG-AA
698 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGTGC-GGGCGCAA
* * * * *
18651054 AGGTCGGCC-GAAGAGGCAAAATGTACAAGCCTGGGATCGACCCAGTCCCCC-CCTG-AGT-G-C
762 A-GCCGACCAG-AGAGGCAAAATGCACAAGCCAGGGATCGACCCAGTCCCCCACATGTAGTCGAC
* *
18651114 -T-AT-TGATCCTGCTG-CTGGTCCTGCGGCCGTAACCCTA-GGTCCAG-TTCG
825 ATGATCTGATCCTGCTGTC-GGTCCTGCGGCCGCAACCC-ACGGTCCAGATCCG
* * *
18651162 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
*
18651227 CCATGAAACGAGCGTCCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG-TCGAGGACCGA
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCT-G-GGACCG-
** * * *
18651291 CTCGGTCCCCCCTGTGTGCTGTCGATCTTGCTACCACAACCCTC-AGTTTGATTCGATCTTAGAG
128 CTCGGTCCCCCCTACGTGCTGTCGATCCTGCTATCACAACCCTCGA-TTTGATTCGATCTTAGAC
* * *
18651355 TGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGAGCATTGAGCCGGCCGA
192 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGCCGGCCGA
* * * *
18651420 AGAGGCATAATGCGCAAGCCGAGGATCGACCTGATCCCTCTCTGCGTGCT
257 AGAGGCATAATGCGCAAGCCGAAGATAGGCCTGATCCCCCTCTGCGTGCT
18651470 GTCGATCCCA
Statistics
Matches: 994, Mismatches: 164, Indels: 61
0.82 0.13 0.05
Matches are distributed among these distances:
879 24 0.02
880 514 0.52
881 208 0.21
882 108 0.11
883 4 0.00
884 3 0.00
885 2 0.00
887 1 0.00
888 2 0.00
889 3 0.00
890 3 0.00
891 122 0.12
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (876 bp):
ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGACCGCTC
GGTCCCCCCTACGTGCTGTCGATCCTGCTATCACAACCCTCGATTTGATTCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGCCGGCCGAAGAG
GCATAATGCGCAAGCCGAAGATAGGCCTGATCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAA
CCCTCGGCCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAAAG
GACGTGCGGGCACTAACCAAGCAGAAGAGGCAGAATGCGCAAGCCGGGGATCCGCCCGATCCCCC
CTACGTGCGGTCGATCCTACGGTCGTAACCCTCAATCCGATCTGATCCTAGACTGGGAATGAACT
CCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAACATGCGGAC
GCTCAGTCAACCAGAGAGCTCGATCAGAGAGGCATAATACGAAAACCAGGGATCAGCCCGGTCCC
CCTCTGCGTGCTACCGATCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGTGCGGGCGCAAAGCCGACCAGAGAGGCAAA
ATGCACAAGCCAGGGATCGACCCAGTCCCCCACATGTAGTCGACATGATCTGATCCTGCTGTCGG
TCCTGCGGCCGCAACCCACGGTCCAGATCCG
Found at i:18651902 original size:26 final size:26
Alignment explanation
Indices: 18651873--18651925 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18651863 CCGGTCCGAT
18651873 CTTAGA-ATGGCAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
18651899 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18651925 C
1 C
18651926 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18652021 original size:709 final size:715
Alignment explanation
Indices: 18650781--18652182 Score: 1664
Period size: 709 Copynumber: 2.0 Consensus size: 715
18650771 AATCCGGTCT
* *
18650781 GATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * *
18650846 CCCACGAAACGAGTGTGCGGGTGCTCAGTCGACCAGAGAGGCCAGTTGAAGAGGCATAATATGAA
66 CCAACGAAACAAGCGTGCGGGAGCTCAGTCGACCAGAGAGGCCAGTAGAAGAGGCATAATACGAA
* ** *
18650911 AACGAGGATCAGCCCGGTCCCCCTCTATGTGCTGTCGATCCCACTACCGATCCTGCTGCCAGAAC
131 AACGAGGATCAGCCCGATCCCCCTCTACATGCTGTCGATCCCACTACCGATCCTGCTGCCACAAC
* * *
18650976 CCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGA
196 ACTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * ** * **
18651041 GTGTCTGGGCGAAAGGTCGGCCGAAGAGGCAAAATGTACAAGCCTGGGATCGACCCAGTCCCCCC
261 GCGGCTGCACGAAAGGCCGGCCGAAGAGGC-AAA--TACAA-CCTGCAATCGA--CA--CCCCCC
** * * ** * *
18651106 CTGAGTGCTATTGATCCTGCTGCTGGTCCTGCGGCCGTAACCCTAGGTCCAGTTCGATCTTAGAC
318 CTGAGTGCTACCGATCCTGCTACTGGTCCTACGGCCACAACCCTAGGTCCAGTCCGATCTTAGAA
18651171 TAGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAAC
383 TAGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAAC
* * * * *
18651236 GAGCGTCCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGAGGACCGACTCGGTCCCC
448 GAGCGTCCGGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAAGCCGAGGACCGACTCGATCCCC
** * ** * *
18651301 CCTGTGTGCTGTCGATCTTGCTACCACAACCCTCAGTTTGAT-TCGATCTTAGAGTGGGAAAGAA
513 CCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAAAGAA
* *
18651365 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGAGCATTGAGCCGGCCGAAGAGGCATAA
577 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCATTGAGCAGGCCGAAGAGGCATAA
* * * *
18651430 TGCGCAAGCCGAGGATCGACCTGATCCCTCTCTGCGTGCTGTCGATCCCACTACCATAACGCCCG
642 TGCGCAAACCAAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTACCATAACGCCCG
18651495 ATCTGATCC
707 ATCTGATCC
*
18651504 GATCTTTGACTGGGAATGAACT-CAGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
1 GATCTTAGACTGGGAATGAACTCCA-TACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* ** *
18651568 ACCAACGAAACAAGCGTGCGGGAGCTCAGTCGGCTGGAGAGGCCGGTCAG-AGAGGCATAATACG
65 ACCAACGAAACAAGCGTGCGGGAGCTCAGTCGACCAGAGAGGCCAGT-AGAAGAGGCATAATACG
** * * * * *
18651632 CAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCGATCCTGCTGCCAC
129 -AAAACGAGGATCAGCCCGATCCCCCTCTACATGCTGTCGATCCCACTACCGATCCTGCTGCCAC
* ** **
18651697 AACACTTGGTCCGGTTGGGGCTTAGACATGGAATGAACTTTGTATGCCTAAGTTAACCCACGAAA
193 AACACTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
** * * * *
18651762 CGAGCGCGCATGCAC-TTA-GCCGGCCGGAGAGGC-AA-CCCA-C-GCAAT-GA-A-CTCCCCTG
258 CGAGCG-GC-TGCACGAAAGGCCGGCCGAAGAGGCAAATACAACCTGCAATCGACACCCCCCCTG
* * * * *
18651818 CGTGCTACCGATCCTGCTACTGGTCCTACTGCTACAACCCTTGGTCCGGTCCGATCTTAGAAT-G
321 AGTGCTACCGATCCTGCTACTGGTCCTACGGCCACAACCCTAGGTCCAGTCCGATCTTAGAATAG
*
18651882 GCAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
386 G-AATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGA
** ** * * *
18651947 GCGTGTGGGCGCTCAACCGGTCAGAAAGGTAGAATGTGCAAGCC-AGGGACCGGC-CTGATCCCC
450 GCGTCCGGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAAGCCGA-GGACCGACTC-GATCCCC
** * * *
18652010 CCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
513 CCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAAAGAAC
* * * * * * **
18652075 TCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGTTGAGCAGGCTGGAGAGGTGTAAT
578 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCATTGAGCAGGCCGAAGAGGCATAAT
*
18652140 GCGCAAACCAAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
643 GCGCAAACCAAGGATCGACCCGATCCCCCTCTGCGTGCTGTCG
18652183 GTCTCGCTGC
Statistics
Matches: 572, Mismatches: 98, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
708 4 0.01
709 310 0.54
710 1 0.00
712 1 0.00
715 2 0.00
716 3 0.01
717 1 0.00
719 2 0.00
722 4 0.01
723 110 0.19
724 129 0.23
725 2 0.00
726 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (715 bp):
GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCAACGAAACAAGCGTGCGGGAGCTCAGTCGACCAGAGAGGCCAGTAGAAGAGGCATAATACGAA
AACGAGGATCAGCCCGATCCCCCTCTACATGCTGTCGATCCCACTACCGATCCTGCTGCCACAAC
ACTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
GCGGCTGCACGAAAGGCCGGCCGAAGAGGCAAATACAACCTGCAATCGACACCCCCCCTGAGTGC
TACCGATCCTGCTACTGGTCCTACGGCCACAACCCTAGGTCCAGTCCGATCTTAGAATAGGAATG
AACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCC
GGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAAGCCGAGGACCGACTCGATCCCCCCTACGTG
CTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAAAGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGAGCATTGAGCAGGCCGAAGAGGCATAATGCGCAAAC
CAAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTACCATAACGCCCGATCTGATCC
Found at i:18652246 original size:159 final size:158
Alignment explanation
Indices: 18651898--18652400 Score: 421
Period size: 158 Copynumber: 3.2 Consensus size: 158
18651888 AACTCCGTAT
* *
18651898 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAA
* * * * * *
18651963 CCGGTCAGAAAGGTAGAATGTGCAAGCCAGGGACCGGCCTGATCCCCCCTACGTGCTGTCGATCC
66 CAGGTCAGAAAGGTAGAATGCGCAAACCAAGGACCGACCCGATCCCCCCTACGTGCTGTCGATCC
* * *
18652028 TGCTGTCGCAACCCTCGGTCCGGTCTGA
131 TGCTGCCACAACCCTCGGTCCGGACTGA
* * * * *
18652056 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCA
* * * * * *
18652120 GCAGG-CTGGAGAGGT-GTAATGCGCAAACCAAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
65 ACAGGTC-AGAAAGGTAG-AATGCGCAAACCAAGGACCGACCCGATCCCCC-CTACGTGCTGTCG
* * *
18652183 GT-CTCGCTGCCACAACCCTCGGT-CTGACTGGG
127 ATCCT-GCTGCCACAACCCTCGGTCCGGACT-GA
* *
18652215 GCTTAGACATGGAACGAACTACC-TATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCA
* * * * * * * * * * * * ** *
18652279 GTC-GGCCGGAGAGGCAGAACGTGCAAGCCGAGGATC-AGCTCGGTCCCCCCTGTGTGCTATCGA
65 -ACAGGTCAGAAAGGTAGAATGCGCAAACCAAGGACCGA-CCCGATCCCCCCTACGTGCTGTCGA
* * * *
18652342 TCCTACTGCCGCAACCCTCGGTCCGGTCTTA
128 TCCTGCTGCCACAACCCTCGGTCCGGACTGA
* *
18652373 TCTTAGAC-TGGGAATGATCTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18652401 TTAGTAATGG
Statistics
Matches: 279, Mismatches: 50, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
157 6 0.02
158 145 0.52
159 122 0.44
160 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAA
CAGGTCAGAAAGGTAGAATGCGCAAACCAAGGACCGACCCGATCCCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGGACTGA
Found at i:18652562 original size:184 final size:184
Alignment explanation
Indices: 18652215--18652584 Score: 505
Period size: 184 Copynumber: 2.0 Consensus size: 184
18652205 TCTGACTGGG
*
18652215 GCTTAGACATGGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAG
* * * **
18652280 TCGGCCGGAGAGGCAGAACGTGCAAGCCGAGGATCAGCTCGGTCCCCCCTGTGTGCTATCGATCC
66 TCGACCGAAGAGGCAGAACGTGCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCC
* * * *
18652345 TACTGCCGCAACCCTCGGTCCGGTCTTATCTTAGACTGGGAATGATCTCCGTAT
131 TACTACCGCAACCCTCAGTCCGATCTTATCTTAGACTGGGAATGAACTCCGTAT
* *
18652399 GCTTAGTA-ATGGAATGAACT-CCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTC
1 GCTTAG-ACATGGAACGAACTACC-TATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTC
* * * *
18652462 AGTCGATCGAAGAGGTAGAATGTGTAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTATCGAT
64 AGTCGACCGAAGAGGCAGAACGTGCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTATCGAT
* * *
18652527 CCTGCTACCGCAACCCTTAGTCC-AT-TTCGATCTTAGACTGGGAATGAACTCTGTAT
129 CCTACTACCGCAACCCTCAGTCCGATCTT--ATCTTAGACTGGGAATGAACTCCGTAT
18652583 GC
1 GC
18652585 ATAAGTCAAC
Statistics
Matches: 163, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
182 2 0.01
183 3 0.02
184 157 0.96
185 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAG
TCGACCGAAGAGGCAGAACGTGCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCC
TACTACCGCAACCCTCAGTCCGATCTTATCTTAGACTGGGAATGAACTCCGTAT
Found at i:18652658 original size:501 final size:500
Alignment explanation
Indices: 18651841--18652927 Score: 1374
Period size: 501 Copynumber: 2.2 Consensus size: 500
18651831 CTGCTACTGG
** * * *
18651841 TCCTACTGCTACAACCCTTGGTCCGGTCCGATCTTAGAATGGCAATGAACTCCGTATGCTTAGAC
1 TCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-
* * * *
18651906 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAACCGGTCAG
65 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAACCGATCAG
* * * **
18651971 AAAGGTAGAATGTGCAAGCCAGGGACCGGCCTGATCCCCCCTACGTGCTGTCGATCCTGCTGTCG
130 AAAGGTAGAATGTGCAAGCCAGGGACCAGCCCGATCCCCCCTACGTGCTATCGATCCTGCTACCG
* * *
18652036 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
195 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAA
* * * ** * *
18652101 ACGAGTGTGCGGGCGTTGAGCAGGCTGGAGAGGTGTAATGCGCAAACCAAGGATCGACCCGGTCC
260 ACGAGCGTGCGGGCGCTGAGCAGGCTGAAGAGGCATAATGCACAAACCAAGGATCGACCCGATCC
* * * * * * * *
18652166 CCCTCTGCGTGCTGTCGGTCTCGCTGCCACAACCCTCGGT-CTGACTGGGGCTTAGACATGGAAC
325 CCCTCTACGTGCTATCGATCCCACTGCCACAACCCTCGATCCAG-CTGGGGCTCAGACATGGAAC
* * *
18652230 GAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGTCGGCCGGAGAGGCA
389 GAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAATCGACCGGAGAGACA
* * *
18652295 GAACGTGCAAGCCGAGGATCAGCTCGGTCCCCCCTGTGTGCTATCGA
454 GAACGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTATCGA
** *
18652342 TCCTACTGCCGCAACCCTCGGTCCGGTCTTATCTTAGACTGGGAATGATCTCCGTATGCTTAGTA
1 TCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG-A
**
18652407 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAGTCGATC-G
65 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAACCGATCAG
* * *
18652471 AAGAGGTAGAATGTGTAAGCC-GAGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTAC
130 AA-AGGTAGAATGTGCAAGCCAG-GGACCAGCCCGATCCCCCCTACGTGCTATCGATCCTGCTAC
* * * *
18652535 CGCAACCCTTAGTCC-ATTTCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCAC
193 CGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAC
* * * * ** **
18652599 GGAACGAGCGTGCGGGCGCTGAGC-CGATCGAAGAGGCATAATGCATAAGTCGGGGATCGACCCG
257 GAAACGAGCGTGCGGGCGCTGAGCAGGCT-GAAGAGGCATAATGCACAAACCAAGGATCGACCCG
*
18652663 ATCCCCTTCTACGTGCTATCGATCCCACTGCCACAACCCTCGATCCAGCTGGGGCTCAGACATGG
321 ATCCCCCTCTACGTGCTATCGATCCCACTGCCACAACCCTCGATCCAGCTGGGGCTCAGACATGG
* * * * *
18652728 AATGAACTGCCTATGCCTAAGCCAACCGACGAAACGGGCGTGCGGGCGCTCAATCGACCGGAGAG
386 AACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAATCGACCGGAGAG
* * * **
18652793 ACAGAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGA
451 ACAGAACGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTATCGA
* * * * * *
18652843 TCCTACTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
1 TCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAA
* *
18652908 TGAGGATGAACTCCATATGC
66 TG-GAATGAACTCCGTATGC
18652928 TTAGACTGGG
Statistics
Matches: 499, Mismatches: 80, Indels: 14
0.84 0.13 0.02
Matches are distributed among these distances:
500 11 0.02
501 485 0.97
502 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (500 bp):
TCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAA
TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAACCGATCAGA
AAGGTAGAATGTGCAAGCCAGGGACCAGCCCGATCCCCCCTACGTGCTATCGATCCTGCTACCGC
AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTGAGCAGGCTGAAGAGGCATAATGCACAAACCAAGGATCGACCCGATCCC
CCTCTACGTGCTATCGATCCCACTGCCACAACCCTCGATCCAGCTGGGGCTCAGACATGGAACGA
ACTACCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAATCGACCGGAGAGACAGA
ACGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTATCGA
Found at i:18652754 original size:159 final size:157
Alignment explanation
Indices: 18652407--18652865 Score: 492
Period size: 159 Copynumber: 2.9 Consensus size: 157
18652397 ATGCTTAGTA
* * *
18652407 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAGTCGATCGA
1 ATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGA
* * * * *
18652472 AGAGGTAGAATGTGTAAGCCGAGGATC-AGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTACC
65 AGAGGCAGAATGCGTAAGTCGGGGATCGA-CCCGGTCCCCCCTACGTGCTATCGATCCTACTACC
* ** * *
18652536 GCAACCCT-TAGTCCATTTCGATCTTAGAC
129 GCAACCCTCGA-TCCAGCTCGAGCTCAGAC
* * * * * *
18652565 -TGGGAATGAACTCTGTATGCATAAGTCAACCCACGGAACGAGCGTGCGGGCGCTGAGCCGATCG
1 AT-GGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCG
* * * * * *
18652629 AAGAGGCATAATGCATAAGTCGGGGATCGACCCGATCCCCTTCTACGTGCTATCGATCCCACTGC
64 AAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCC-CCTACGTGCTATCGATCCTACTAC
* * *
18652694 CACAACCCTCGATCCAGCTGGGGCTCAGAC
128 CGCAACCCTCGATCCAGCTCGAGCTCAGAC
* * * * *
18652724 ATGGAATGAACTGCCTATGCCTAAGCCAACCGACGAAACGGGCGTGCGGGCGCTCAATCGACCGG
1 ATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGA
* * * * *
18652789 AGAGACAGAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTACCG
65 AGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTACTACCG
18652854 CAACCCTCGATC
130 CAACCCTCGATC
18652866 TGATCCGATC
Statistics
Matches: 243, Mismatches: 51, Indels: 14
0.79 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 116 0.48
159 123 0.51
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
ATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGAA
GAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTACTACCGC
AACCCTCGATCCAGCTCGAGCTCAGAC
Found at i:18652916 original size:26 final size:25
Alignment explanation
Indices: 18652875--18652953 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 25
18652865 CTGATCCGAT
18652875 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGG-ATGAACTTCGTATG
* *
18652901 CTTAGACTGAGGATGAACTCCATATG
1 CTTAGACTG-GGATGAACTTCGTATG
18652927 CTTAGACTGGGGATGAAC-TCTGTATG
1 CTTAGACT-GGGATGAACTTC-GTATG
18652953 C
1 C
18652954 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
25 1 0.02
26 42 0.91
27 3 0.07
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTTCGTATG
Found at i:18653444 original size:159 final size:158
Alignment explanation
Indices: 18653069--18653459 Score: 378
Period size: 158 Copynumber: 2.5 Consensus size: 158
18653059 CTGCCGACTT
* * * *
18653069 GCTGCCACAACCCTCGATCTAGCTGGGGCTTAGATATGGAATGAACTTCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGTTCGAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
18653134 CCACGAAACCAGCGTTCAGGAGCTCAGTCGATCGGAGAGGCAGAATGTGTAAGCCGGGGATCAAC
66 CCACAAAACCAGCATTCAGGAGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCAGGGGATCAAC
* * **
18653199 CCGATCCCTCCTGCGTGCTGTCAATCTT
131 CCGATCCCCCCTACGTGCTGTCAATCCC
* * * * ** * *
18653227 GCTACCGCAACCCTCGGTCCGATCT-GATCTTAGAC-TAGGAACGAACTCCGTATGCCTAAGTCA
1 GCTGCCACAACCCTC-GTTCGAGCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
** * * * * *
18653290 ACCCACAAAATGAGCATTTAGGCGTTGAGCC-AGCCGGAGAGGCATAATGTGCAAGCAGGGGATC
64 ACCCACAAAACCAGCATTCAGGAGCTCAGCCGA-CCGGAGAGGCAGAATGTGCAAGCAGGGGATC
* * **
18653354 GACCTGATCCCCCTCTACGTGCTG-CTGGTCCC
128 AACCCGATCCCCC-CTACGTGCTGTC-AATCCC
*
18653386 GCTGCCACAACCCTCAGTTCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTC-GTTCGAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
*
18653450 CCCACGAAAC
65 CCCACAAAAC
18653460 GGATGTGCGG
Statistics
Matches: 182, Mismatches: 44, Indels: 13
0.76 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 105 0.58
159 74 0.41
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTGCCACAACCCTCGTTCGAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAACCAGCATTCAGGAGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCAGGGGATCAAC
CCGATCCCCCCTACGTGCTGTCAATCCC
Found at i:18653600 original size:26 final size:26
Alignment explanation
Indices: 18653570--18653621 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18653560 CGGTATGATT
18653570 TTAGACTGGGAATGAACT-TCGTATGC
1 TTAGACTGGGAATGAACTCT-GTATGC
*
18653596 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
18653622 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:18654669 original size:26 final size:26
Alignment explanation
Indices: 18654633--18654688 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
18654623 TCGATCTGAT
* *
18654633 CTTAGATTGGGAATGGACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
* *
18654659 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTACG
18654685 CTTA
1 CTTA
18654689 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:18655836 original size:158 final size:160
Alignment explanation
Indices: 18655353--18656184 Score: 702
Period size: 158 Copynumber: 5.2 Consensus size: 160
18655343 GTCGCTCAAA
* * * **
18655353 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGTGGGTGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* ** * * *
18655418 GTCGACCGAAGAGGCAGAATGTGCAAGTC-AGGGATCGGCCCGGTGCCCC-CTGCGTGCTGTCGA
66 GCCGACCGAAGAGGCAGAATGCACAAGTCGA-GGATCGGCCCGATCCCCCTCTGCGTGCTGCCGA
18655481 TCCTGCTATCGCAACCCTCGGTCCGGT-TCG
130 TCCTGCTATCGCAACCCTCGGTCCGGTCTCG
* ** * * * *
18655511 ATCTTAGACTAGGAATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * * * * * *
18655576 GCCGGCCGGAAAAGGCATAATGCGCAAGCCG-GAGATTGGCTCGATCCCCCTCTGCGTGCTGCCG
66 GCCGACC-GAAGAGGCAGAATGCACAAGTCGAG-GATCGGCCCGATCCCCCTCTGCGTGCTGCCG
* * * * * *
18655640 GTCCCGCTACCACAACCCTCGGTCCAG-CTGG
129 ATCCTGCTATCGCAACCCTCGGTCCGGTCTCG
** * * * *
18655671 GGCTTAGACAT-GGAATTAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTC
* ** * *
18655735 AGCAGGTCGGAGAGGCAGAATGCACAAGTCGAGGATTGGCCCGATCCCCC-CTGCGTGCTGCCGA
65 AGCCGACCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGA
* * *
18655799 TCCTACTGTCGCAACCCTCAGTCCGGTCT-G
130 TCCTGCTATCGCAACCCTCGGTCCGGTCTCG
* * *
18655829 ATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAC-GGCACTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * * * * *
18655893 GCCGATCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGAT
66 GCCGACCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGAT
* * *
18655958 CCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGAT-TGG
131 --C-CTG-C--T-AT-C-G---CAACCCTCGGTCCGGTCTCG
** * * *
18655999 GGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTC
* ** * * * * ** * **
18656063 AGCC-AGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCC-CTATGTCCTATCG
65 AGCCGA-CCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCG
* * *
18656126 ATCCTGCCACCGTAACCCTCGGTCCGGTCT-G
129 ATCCTGCTATCGCAACCCTCGGTCCGGTCTCG
*
18656157 ATCTTAGACTGGGAATGAACTCTGTATG
1 ATCTTAGACTGGGAATGAACTCCGTATG
18656185 ATTCGATATG
Statistics
Matches: 544, Mismatches: 102, Indels: 56
0.77 0.15 0.08
Matches are distributed among these distances:
157 52 0.10
158 189 0.35
159 68 0.12
160 94 0.17
161 4 0.01
162 2 0.00
164 1 0.00
165 1 0.00
166 2 0.00
167 4 0.01
168 1 0.00
169 1 0.00
170 77 0.14
171 48 0.09
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (160 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
GCCGACCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGAT
CCTGCTATCGCAACCCTCGGTCCGGTCTCG
Found at i:18656082 original size:328 final size:317
Alignment explanation
Indices: 18655355--18656184 Score: 963
Period size: 328 Copynumber: 2.6 Consensus size: 317
18655345 CGCTCAAAAT
* * *
18655355 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGTGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
18655419 TC-GACCGAAGAGGCAGAATGTGCAAGTC-AGGGATCGGCCCGGTGCCCCCTGCGTGCTGTCGAT
65 -CAG-TCGAAGAGGCAGAATGCGCAAGTCGA-GGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
* *
18655482 CCTGCTATCGCAACCCTCGGTCCGGT-TCGATCTTAGACTAGGAATGAACTTTGTATGCATAAGT
127 CCTGCTATCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCTGTATGCATAAGT
* * * *
18655546 CAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGCCGGAAAAGGCATAATGCGCAAGCCGGAGA
191 CAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCGGAAAAGGCATAATGCACAAGCCGGAGA
** *
18655611 TTGGCTCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTACCACAACCCTCGGTCCAGCTGGGG
256 TCAGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTACCACAACCCTCGGTCCAGCTGGGG
* * * * *
18655673 CTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18655738 AGGTCGGAGAGGCAGAATGCACAAGTCGAGGATTGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
66 A-GTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * * * * *
18655803 ACTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
130 GCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
* * * * *
18655868 CCACGAAATGAGCGTAC-GGCACTCAGCCGATC-GAAGAGGCATAATGCACAAGTCGGGGATCAG
195 CCACGAAACGAGCGTACGGGCACTCAGCCGACCGGAAAAGGCATAATGCACAAGCCGGAGATCAG
* *
18655931 CCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCC-GA
260 CCCGAT--CCC-C--C-T-CTG-CG-T---GCTGCCGGTCCCGCTACCACAACCCTCGGTCCAG-
*
18655995 TTGGGG
312 CTGGGG
* *
18656001 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-
* * * * ** * *
18656066 CAGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTATGTCCTATCGATCCT
65 CAGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * *
18656131 GCCACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
130 GCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
18656185 ATTCGATATG
Statistics
Matches: 427, Mismatches: 66, Indels: 28
0.82 0.13 0.05
Matches are distributed among these distances:
316 30 0.07
317 13 0.03
318 180 0.42
319 5 0.01
321 1 0.00
322 1 0.00
323 3 0.01
324 2 0.00
325 1 0.00
327 1 0.00
328 188 0.44
329 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
AGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACC
CACGAAACGAGCGTACGGGCACTCAGCCGACCGGAAAAGGCATAATGCACAAGCCGGAGATCAGC
CCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTACCACAACCCTCGGTCCAGCTGGGG
Found at i:18656331 original size:188 final size:184
Alignment explanation
Indices: 18656008--18656372 Score: 462
Period size: 188 Copynumber: 2.0 Consensus size: 184
18655998 GGGCTTAGAC
* *
18656008 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGTCGA
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGTCGA
* * * * * *
18656073 AGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTATGTCCTATCGATCCTGCCACCG
66 AGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCCTATGTCCTATCGATCCTGCCACCG
* *
18656138 TAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAACTCTGTATGATTCGAT
131 TAACCCTCGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGATTCGAT
* * * * * *
18656192 ATGGAATGAACTTCGTATGCCTATGCCAACCCACAAAACGAGCGTGCGTCCGAGTGCTCAATCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACG---G-GCGCTCAACCAG
* * * *
18656257 TCGGAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCCTATGTGCTGTCGATCCTGCT
62 TCGAAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCCTATGTCCTATCGATCCTGCC
* * * *
18656322 GCTGTAACCCTCGATCTGGTTCGATCTTAGACTGGTAATGAACTCCGTATG
127 ACCGTAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
18656373 CCTAAGTCAA
Statistics
Matches: 152, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
184 44 0.29
187 1 0.01
188 105 0.69
189 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGTCGA
AGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCCTATGTCCTATCGATCCTGCCACCG
TAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGATTCGAT
Found at i:18656510 original size:159 final size:155
Alignment explanation
Indices: 18656193--18656690 Score: 421
Period size: 159 Copynumber: 3.1 Consensus size: 155
18656183 TGATTCGATA
* * * * *
18656193 TGGAATGAACTTCGTATGCCTATGCCAACCCACAAAAC-GAGCGTGC-GTCCGAGTGCTCAATCG
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCGTGCAG-GC-A---CTCAA-AG
* * * *
18656256 GTCGGAGAGGCAGAATGCGCAAG-CCAGGGA-CCAGCCCGATCCCCCCTATGTGCTGTCGATCCT
59 GTCGGAGAGGCAGAATGCGCAAGTCGA-GGATCGA-CCCGGTCCCCCCTACGTGCTGTCGATCCT
* * * **
18656319 GCTGCTGTAACCCTCGATCTGGTTCGATCTTAGAC
122 GCTGCCGCAACCCTCGGTCTGACT-GATCTTAGAC
* * * * *
18656354 TGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GATCGTGCGGGCACTGAGCAGGTCG
1 TGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCGTGCAGGCACTCA-AAGGTCG
* **
18656418 GAGAGGCAGAATGCACAAGTCGAGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCCACTGC
63 GAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTGC
* **
18656483 CACAACCCTCGGTCTGACTAGGGCTTAGAC
127 CGCAACCCTCGGTCTGACT-GATCTTAGAC
* * * * * * * *
18656513 ATGGACTAAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCAGGCGCTCAAACGACTGA
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCAGGCACTCAAAGGTC-GG
* * * * * *
18656578 AGAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCGTGCTGCCG
64 AGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCG
* *
18656643 CAACCCTCGGTCTGGTCTGATCTTAAAC
129 CAACCCTCGGTCT-GACTGATCTTAGAC
18656671 TGGGAATGAACTCCGTATGC
1 T-GGAATGAACTCCGTATGC
18656691 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 55, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 97 0.36
159 125 0.46
160 4 0.01
161 4 0.01
162 39 0.14
163 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCAGGCACTCAAAGGTCGGAG
AGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCA
ACCCTCGGTCTGACTGATCTTAGAC
Found at i:18656700 original size:26 final size:26
Alignment explanation
Indices: 18656664--18656716 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18656654 CTGGTCTGAT
18656664 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
18656690 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18656716 C
1 C
18656717 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18656708 original size:505 final size:508
Alignment explanation
Indices: 18655739--18656744 Score: 1219
Period size: 505 Copynumber: 2.0 Consensus size: 508
18655729 GCACTCAGCA
* *** *
18655739 GGTCGGAGAGGCAGAATGCACAAGTCGAGGATTGGCCCGATCCCCCCTGCGTGCTGCCGATCCTA
1 GGTCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGATCCCCCCTACGTGCTGCCGATCCTA
*
18655804 CTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
66 CTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
18655869 CACGAAATGAGCGTACGGCACTCAGCCGATCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCC
131 CACGAAACGAGCGTACGGCACTCAGCAGATCGAAGAGGCAGAATGCACAAGTCGAGGATCAGCCC
* * *
18655934 GATCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGATTGG
196 GATCCCCCTCTACGTGCTGTCGA-----CT-CC-G-CCTACTGCCACAACCCTCGGTCCGACTAG
* * *
18655999 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
253 GGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCA
* * * *
18656064 GCCAGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTATGTCCTATCGATC
318 ACCACTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTCCTATCGATC
* * * * *
18656129 CTGCCACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGATTCGATAT
383 CTGCCACCGCAACCCTCGGTCCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGATTAGATAG
* * *
18656194 GGAATGAACTTCGTATGCCTATGCCAACCCACAAAACGAGCGTGCGTCCGAGTGCTCAATC
448 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGTCCGAGTGCTCAATC
* * *
18656255 GGTCGGAGAGGCAGAATGCGCAAGCC-AGGGACCAGCCCGATCCCCCCTATGTGCTGTCGATCCT
1 GGTCGGAGAGGCAGAATGCACAAGCCGA-GGACCAGCCCGATCCCCCCTACGTGCTGCCGATCCT
* * * *
18656319 GCTG-CTGTAACCCTC-GATCTGGT-TCGATCTTAGACTGGTAATGAACTCCGTATGCCTAAGTC
65 ACTGTC-GCAACCCTCAG-TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
18656381 AACCCACGAAACGATCGTGCGGGCACTGAGCAGGTCGGAGAGGCAGAATGCACAAGTCGAGGATC
127 AACCCACGAAACGAGCGTAC-GGCACTCAGCAGATCGAAGAGGCAGAATGCACAAGTCGAGGATC
* *
18656446 -GACCCGGTCCCCCTCTACGTGCTGTCGA-T-C-CC-ACTGCCACAACCCTCGGTCTGACTAGGG
191 AG-CCCGATCCCCCTCTACGTGCTGTCGACTCCGCCTACTGCCACAACCCTCGGTCCGACTAGGG
* * *
18656506 CTTAGACATGGACTAAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCAGGCGCTCAA
255 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTACAGGCGCTC-A
* * * * * *
18656570 ACGACT-GAAGAGGCAGAATGTGCAAGTCGGGGATCGGC-CTGGTCCCCCCTGCGTGCTGTCGAT
318 ACCACTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GGTCCCCCCTACGTCCTATCGAT
* ** * *
18656633 CGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACT
382 CCTGCCACCGCAACCCTCGGTCCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGATTAGA-T
* * **
18656698 -GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCG
446 AGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCG
18656745 GACGCTCAGC
Statistics
Matches: 420, Mismatches: 60, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
504 2 0.00
505 219 0.52
506 7 0.02
509 1 0.00
511 1 0.00
515 4 0.01
516 123 0.29
517 63 0.15
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (508 bp):
GGTCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGATCCCCCCTACGTGCTGCCGATCCTA
CTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTACGGCACTCAGCAGATCGAAGAGGCAGAATGCACAAGTCGAGGATCAGCCC
GATCCCCCTCTACGTGCTGTCGACTCCGCCTACTGCCACAACCCTCGGTCCGACTAGGGCTTAGA
CATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCACTCG
AAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTCCTATCGATCCTGCCACC
GCAACCCTCGGTCCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGATTAGATAGGGAATGAA
CTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGTCCGAGTGCTCAATC
Found at i:18657727 original size:158 final size:158
Alignment explanation
Indices: 18657384--18657727 Score: 388
Period size: 158 Copynumber: 2.2 Consensus size: 158
18657374 TGGCTCAAAC
* * *
18657384 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
18657449 CCGGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CCGACCGAGAGGCAAAATGCGCAAGCCAGGGATCGACACGATCCCCCTCTGCGTGCTGCCGATCC
** * * * *
18657514 CGCTGCCACAACCCTCGGTCGGACTGGG
131 CGCAACCACAACCCTCGATCCGACTCGA
* * * * *
18657542 GCTTAGA-TATGGAATGAACTCCCTATGCGTAAGCTAACCTACGAAACG-GACGTGCGGGCGCTC
1 TCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTC
* *
18657605 AACCGACCGGAGAGGCAAAATGCGTAAGCCAGGGATCGACACGATCCCCC-CTGCGTGCTGTCGA
64 AACCGACC-GAGAGGCAAAATGCGCAAGCCAGGGATCGACACGATCCCCCTCTGCGTGCTGCCGA
* * * *
18657669 TCCTGCAATCACAACCCTTGATCCGATTCGA
128 TCCCGCAACCACAACCCTCGATCCGACTCGA
*
18657700 TCTTAGACTAGGAATGAACTCTGTATGC
1 TCTTAGACTAGGAATGAACTCCGTATGC
18657728 TTAGACTAGG
Statistics
Matches: 152, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 113 0.74
159 37 0.24
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCGAGAGGCAAAATGCGCAAGCCAGGGATCGACACGATCCCCCTCTGCGTGCTGCCGATCC
CGCAACCACAACCCTCGATCCGACTCGA
Found at i:18658434 original size:26 final size:26
Alignment explanation
Indices: 18658398--18658450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18658388 CCAGTCCGAT
*
18658398 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18658424 CTTAGACTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18658450 C
1 C
18658451 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18659874 original size:26 final size:26
Alignment explanation
Indices: 18659838--18659890 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18659828 CCGATCCGAT
*
18659838 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18659864 CTTAGACTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18659890 C
1 C
18659891 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18660583 original size:26 final size:26
Alignment explanation
Indices: 18660546--18660596 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18660536 CGGTCTAATC
18660546 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
18660572 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
18660597 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:18661489 original size:159 final size:159
Alignment explanation
Indices: 18661065--18661543 Score: 423
Period size: 158 Copynumber: 3.0 Consensus size: 159
18661055 CCGTTGTTGG
18661065 TCCTACTACCACAACCCTCGGT-TCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAG
1 TCCTACTACCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAG
* * * * * * *
18661129 CCAAACCATGAAACGAGCGTGCGGGCGCTCA-ACCGATCGGAGAGGCAGAATGCACAAGTC-AGG
65 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGACGGCT-GGAGAGGCAGAATGCGCAAGCCGA-A
* *** * * *
18661192 GATAGGCCCGATCTGGCCTTGCTTGCTGTCGA
128 GATCGGCCCGATCCCACCTTACGTGCTGCCGA
* *** * * ** **
18661224 TCCTGCTACTGTAACCCTTGGTCTGTCT-GATCTTAG-GTTGGGAATGAACTTCGTATGCCTAAG
1 TCCTACTACCACAACCCTCGGTCTGACTGGGGCTTAGACAT-GGAATGAACTTCGTATGCCTAAG
* * * * * * * * ** *
18661287 TCAACCCACAAAATGAGCGTGCGAGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCGAAGA
65 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGACGGCTGGAGAGGCAGAATGCGCAAGCCGAAGA
* *
18661352 TCGGCCCGATCCCACTTTACGTGCTGCCGG
130 TCGGCCCGATCCCACCTTACGTGCTGCCGA
* *
18661382 T-CTCACTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 TCCT-ACTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAG
* * * * *
18661446 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCTGGAGAGGCAGAATGTGTAAGCCGATGA
65 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGACGGCTGGAGAGGCAGAATGCGCAAGCCGAAGA
* * * * *
18661511 TCAGCCCGGTCCC-CCCTGCGTGCTACCGA
130 TCGGCCCGATCCCACCTTACGTGCTGCCGA
18661540 TCCT
1 TCCT
18661544 GTTGTCGTAA
Statistics
Matches: 241, Mismatches: 71, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
157 3 0.01
158 124 0.51
159 112 0.46
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
TCCTACTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAGACGGCTGGAGAGGCAGAATGCGCAAGCCGAAGAT
CGGCCCGATCCCACCTTACGTGCTGCCGA
Found at i:18661601 original size:26 final size:26
Alignment explanation
Indices: 18661572--18661624 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18661562 CTGATCCGAT
*
18661572 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
*
18661598 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
18661624 C
1 C
18661625 CAAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:18663190 original size:26 final size:26
Alignment explanation
Indices: 18663161--18663213 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18663151 TCTATCCGAT
18663161 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18663187 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18663213 C
1 C
18663214 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18663192 original size:184 final size:185
Alignment explanation
Indices: 18663002--18663372 Score: 582
Period size: 184 Copynumber: 2.0 Consensus size: 185
18662992 ACCGGTTGGG
* * **
18663002 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTTTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAA
* *
18663067 CCAATCGGAGAGGCAAAATGTGCAAGCTGGGGATCGGCCCGGTCCCCCCCTGCATGCTA-CGATC
66 CCAATCGAAGAGGCAAAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCCTGCATGCTATCGATC
* * *
18663131 CTACTACCGCAACCCTCGGTTCTATCCGATCTTAGACTGGGAATGAACTCCGTAT
131 CTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
18663186 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAA
* * * *
18663251 CCGATCGAAGAGGCAGAATGTGCAAGCTGAGGATCGGCCTGGTCCCCCCCTGCGTGCTATCGATC
66 CCAATCGAAGAGGCAAAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCCTGCATGCTATCGATC
* *
18663316 CTACTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTAT
131 CTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
18663371 GC
1 GC
18663373 CTAAGTCAAC
Statistics
Matches: 169, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
184 112 0.66
185 57 0.34
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAA
CCAATCGAAGAGGCAAAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCCTGCATGCTATCGATC
CTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:18669375 original size:26 final size:26
Alignment explanation
Indices: 18669339--18669391 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18669329 CCGGTCTGAT
*
18669339 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18669365 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18669391 C
1 C
18669392 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18669675 original size:24 final size:24
Alignment explanation
Indices: 18669648--18669698 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
18669638 TTAAAATTTT
18669648 TTTAGAAAGAGTTTTGTCCCCAAA
1 TTTAGAAAGAGTTTTGTCCCCAAA
*
18669672 TTTAGAGAGAGTTTTGTCCCCAAA
1 TTTAGAAAGAGTTTTGTCCCCAAA
18669696 TTT
1 TTT
18669699 TTTTAGAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (24 bp):
TTTAGAAAGAGTTTTGTCCCCAAA
Found at i:18671890 original size:26 final size:26
Alignment explanation
Indices: 18671840--18671892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18671830 TCGGTCTGAT
**
18671840 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18671866 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18671892 C
1 C
18671893 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18672215 original size:367 final size:358
Alignment explanation
Indices: 18671291--18672238 Score: 837
Period size: 367 Copynumber: 2.6 Consensus size: 358
18671281 AGCCTCGTTG
*
18671291 CCACAACCCTC-GATCCGGCTGGGGCTTAGACATGGAATG-AACTCCCTATGCCTAAGCCAACCC
1 CCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAAAC-CCCTATGCCTAAGCCAACCC
* * ** * * * * * ** *
18671354 ACGAAATGGGTGTGTAGGCGCTCAGCC-GACCAGAGAGGCAGAATGCGTAAGCCGGGGATCG-GC
64 ACGAAACGGGCGTACAGGTGCTCAACCAG-CCAAAAAGGCAGAATGCGCAAGCCAAGGATCGAAC
* ** ** ** * * * * *
18671417 CTGATCCCTCCTGGGTGCTGTCGATCCTTCTACCGTAACCCTCGGTTTGATTC-AATCTTAGACT
128 C-GATCCCCCCTGCATGCTACCGATCCCGCTGCCGCAACCCTCGATTCG-GTCAAATCTTAGACT
** * * *
18671481 GGGAATGAACTCCGCACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
191 GGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
*
18671546 AACGTACGGGTGCTCAACCGATCGGAAAGGTCGATCGACGAGGCATAATGCACAAGTCGGGATCA
256 AACGTACGGGCGCTCAACCGATC------G-CGA--GACGAGGCATAATGCACAAGTCGGGATCA
* * * * *
18671611 GCTCGATCCTTCTCTACGTGCTGCCGAACCCATTACCGATCCTGCTG
312 GCCCGATCCCTCTCTACATGCTGCCGAACCCACTACCGATCCTGCTA
* *
18671658 CCACAACCGTCAGTCCGACTGGGGCTTAGACATGGAATGAAACCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAAACCCCTATGCCTAAGCCAACCCAC
* * * * **
18671723 GAAACGGGTGTACAGGTGCTCAGCCAGCCAAAAAGGCAGAATGCGCAAGTCAGGGATCGGTCCGA
66 GAAACGGGCGTACAGGTGCTCAACCAGCCAAAAAGGCAGAATGCGCAAGCCAAGGATCGAACCGA
* * ** * **
18671788 TCCCTCCTGTATGCTGGCGATCCCGCTGCCGCAACCCTCGCTTCGGTCTGATCTTAGACTGGGAA
131 TCCCCCCTGCATGCTACCGATCCCGCTGCCGCAACCCTCGATTCGGTCAAATCTTAGACTGGGAA
* **
18671853 TGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGTGT
196 TGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGT
* * * *
18671918 GCGGGCGCTCAGCCGA-C-CG-GA-GAGGTATAATGCACAAGTTGGGGATCAGCCCGATCCC-CT
261 ACGGGCGCTCAACCGATCGCGAGACGAGGCATAATGCACAAG-TCGGGATCAGCCCGATCCCTC-
* * *
18671978 TCTACATGCTGCC-AGTCTCGCTACCGATCCTGCTA
324 TCTACATGCTGCCGA-ACCCACTACCGATCCTGCTA
* * * *
18672013 CCACAACCCTC-GATTCGGCTGGGGCTTAGACTTGGAATG-AACTCCGTATGCCTAAGCCAACCC
1 CCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAAAC-CCCTATGCCTAAGCCAACCC
* * * * * * *
18672076 ACGAAA-GGAGCGTGCGGGTGCTCAACCGGCCAGAGAGGTAGAATGCGTAAGCCAAGGATC-AAC
64 ACGAAACGG-GCGTACAGGTGCTCAACCAGCCAAAAAGGCAGAATGCGCAAGCCAAGGATCGAAC
18672139 CTGATCCCCCCTGCATGCTACCGATCCTACTGCTGGTCCTGTTACGGTAACCCTCGATTCGGTCA
128 C-GATCCCCCCTGCATGCTACCGATCC--C-GCT-G-CC-G---C---AACCCTCGATTCGGTCA
*
18672204 AATCTTAGACTGTGAATGAACTTTGTATGCTTAGA
180 AATCTTAGACTGGGAATGAACTTTGTATGCTTAGA
18672239 AATGGAATCG
Statistics
Matches: 485, Mismatches: 72, Indels: 48
0.80 0.12 0.08
Matches are distributed among these distances:
354 26 0.05
355 163 0.34
357 1 0.00
358 5 0.01
359 1 0.00
360 2 0.00
361 1 0.00
364 1 0.00
366 3 0.01
367 275 0.57
368 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (358 bp):
CCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAAACCCCTATGCCTAAGCCAACCCAC
GAAACGGGCGTACAGGTGCTCAACCAGCCAAAAAGGCAGAATGCGCAAGCCAAGGATCGAACCGA
TCCCCCCTGCATGCTACCGATCCCGCTGCCGCAACCCTCGATTCGGTCAAATCTTAGACTGGGAA
TGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGT
ACGGGCGCTCAACCGATCGCGAGACGAGGCATAATGCACAAGTCGGGATCAGCCCGATCCCTCTC
TACATGCTGCCGAACCCACTACCGATCCTGCTA
Found at i:18673438 original size:26 final size:25
Alignment explanation
Indices: 18673399--18673450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
18673389 GGCTCAAACT
18673399 CTTAGACTGGAATGAACT-TCGTATG
1 CTTAGACTGGAATGAACTCT-GTATG
18673424 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCTGTATG
18673450 C
1 C
18673451 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 17 0.68
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTATG
Found at i:18674648 original size:26 final size:26
Alignment explanation
Indices: 18674619--18674686 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
18674609 TTAGACTGGG
18674619 AATGAACTCCGTATGCTTAGACATGA
1 AATGAACTCCGTATGCTTAGACATGA
*
18674645 AATGAACTCCGTATGCTTAGACATGG
1 AATGAACTCCGTATGCTTAGACATGA
18674671 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
18674687 CTAAGCCAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
AATGAACTCCGTATGCTTAGACATGA
Found at i:18675029 original size:159 final size:159
Alignment explanation
Indices: 18674659--18675090 Score: 444
Period size: 159 Copynumber: 2.7 Consensus size: 159
18674649 AACTCCGTAT
* *
18674659 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
18674724 TCGGCCGGAGAGGTAGAATGCACAAGCCGAGGATAAACCCGA-TCCTCC-CTACGTGCTGTCGAT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCC-ATTCCCCCTCTACGTGCTGTCGAT
* * * *
18674787 CTTGCTGCTATAACCCTCGATCCGGCCTAA
130 CTCGCTGCCAAAACCCTCGATCCGGACTAA
* * * *
18674817 TCTTAGAC-TGGGAATGAACTCCGTATG-CATAAGTCAAGCCC-CGAAATGAGCGTGCGGGCACT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCA-AAGCCAA-CCCACGAAACGAGCGTGCGGGCGCT
* * ** * * **
18674879 GAGCCGGCCGAAGTTGCATAATGCGCAAGCCGAGGATCGACCTATTCCCCCTCTGTGTGCTGTCG
63 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCATTCCCCCTCTACGTGCTGTCG
* * * **
18674944 GTCTCGCTGCCAAAACCCTCGGT-CTGACTGGG
128 ATCTCGCTGCCAAAACCCTCGATCCGGACT-AA
* * *
18674976 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18675041 CTGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTTCCCCCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCA-TTCCCCCT
18675091 GCGTGCTATC
Statistics
Matches: 218, Mismatches: 46, Indels: 18
0.77 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 92 0.42
159 112 0.51
160 11 0.05
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCATTCCCCCTCTACGTGCTGTCGATC
TCGCTGCCAAAACCCTCGATCCGGACTAA
Found at i:18675161 original size:158 final size:157
Alignment explanation
Indices: 18674660--18675161 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 157
18674650 ACTCCGTATG
* *
18674660 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
18674724 -TCGGCCGGAGAGGTAGAATGCACAAGCCGAGGATAAACCC-GATCCTCCCTACGTGCTGTCGAT
65 CT-GGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTTCC-CCCTGCGTGCTGTCGAT
* * * * *
18674787 CTTGCTGCTATAACCCTCGATCCGGCCTAAT
128 CCTGCTGCCAAAACCCTCGGTCCGGCC-GAT
* * * * *
18674818 CTTAGACTGGGAATGAACTCCGTATG-CATAAGTCAAGCCC-CGAAATGAGCGTGCGGGCACTGA
1 CTTAGAATGGGAATGAACTCCGTATGCCA-AAGCCAA-CCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * * *
18674881 GCCGGCCGAAGTTGCATAATGCGCAAGCCGAGGATCGACCTA-TTCCCCCTCTGTGTGCTGTCGG
64 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTT-CCCC-CTGCGTGCTGTCGA
* * * **
18674945 T-CTCGCTGCCAAAACCCTCGGTCTGACTGGGG
127 TCCT-GCTGCCAAAACCCTCGGTCCGGC-CGAT
* * *
18674977 CTTAGACAT-GGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18675041 CTGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTTCCCCCTGCGTGCTATCGATCC
65 CTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTTCCCCCTGCGTGCTGTCGATCC
* **
18675106 TACTGCCGCAACCCTCGGTCCGGTCCGAT
130 TGCTGCCAAAACCCTCGGTCCGG-CCGAT
* *
18675135 CTTAGATTGGGAATGAACTCTGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
18675162 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 62, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 3 0.01
158 137 0.52
159 121 0.45
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTTCCCCCTGCGTGCTGTCGATCCT
GCTGCCAAAACCCTCGGTCCGGCCGAT
Found at i:18676239 original size:159 final size:157
Alignment explanation
Indices: 18675882--18676384 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 157
18675872 AACTCCGTAT
*
18675882 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * * *
18675947 TCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCC
66 TCATCGA-AGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCC
* *
18676012 TGCTGCCGCAAACCTCAGTCCGATCTGA
130 TGCTGCCACAAACCTCAGTCCGAGCTGA
* * * * * * * * * *
18676040 TCTGAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACAAGCATACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * **
18676104 GCCAATCGAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGTGTGCTATCGAT
65 GTC-ATCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCC-CTACGTGCTATCGAT
* * *
18676169 -CTCGCTGTCACAACCCTCAGTCCG-GCTGGG
128 CCT-GCTGCCACAAACCTCAGTCCGAGCT-GA
* *
18676199 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * ** * * *
18676264 TCGATCGGAGAGGCAGAATGCGTATGTCGGGGATC-GACTTGATCCCCCC-AGCATGCTACCGAT
66 TC-ATCGAAGAGGCAGAATGCGCAAGTCGGGGATCAG-CCCGGTCCCCCCTA-CGTGCTATCGAT
* * * * * *
18676327 CTTGCAGCCGCAACCCTCGGTCCGATCTGA
128 CCTGCTGCCACAAACCTCAGTCCGAGCTGA
* *
18676357 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18676385 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 147 0.54
159 124 0.45
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TCATCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCCT
GCTGCCACAAACCTCAGTCCGAGCTGA
Found at i:18676742 original size:26 final size:26
Alignment explanation
Indices: 18676713--18676765 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18676703 CTGATCCGAT
*
18676713 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
18676739 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
18676765 C
1 C
18676766 CAAAGCCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:18676828 original size:355 final size:354
Alignment explanation
Indices: 18676177--18676872 Score: 844
Period size: 355 Copynumber: 2.0 Consensus size: 354
18676167 ATCTCGCTGT
* *
18676177 CACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
* * ** * ** * * *
18676242 AAACGGGCGTGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCGTATGTCGGGGATCGACTTGAT
66 AAACGAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATACGTAAATCGAGGATCAACTCGAT
* *
18676307 CCCCCCAGCATGCTACCGATCTTGCAGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAAT
131 CCCCCCAGCATGCTACCGATCCTGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAAT
* * * * * *
18676372 GAACTCCATATGCTTAGACTGGGGATGAACTCCGTATCCCTAAGTCAACCCACGAAATGAGTGTG
196 GAACTCCATATGCTTAGACTGGGAATGAACTCCATATCCCAAAGCCAACCCACGAAACGAGCGTG
* * * *
18676437 CAGGCACTCAGCCGACCAGAGAGGCATAATGCGTAAGTCAGGGATCAGCTCGACCCCCCTCTGCG
261 CAGGCACTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGACCCCCC-CTACG
18676502 TACTGTCGATCCCGCTGCCAGTCCTGTTAC
325 TACTGTCGATCCCGCTGCCAGTCCTGTTAC
* ** *
18676532 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACTCACA
1 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
* * *
18676597 AAATGAGCATGCGGGCGCTCAACCG-TCCGGAGAGGTAGAATACGTAAATCGAGGATCAACTCGA
66 AAACGAGCATGCGGGCACTCAACCGAT-CGGAGAGGCAGAATACGTAAATCGAGGATCAACTCGA
* * * * * *
18676661 TCCCCTCTA-CGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
130 TCCCC-CCAGCATGCTACCGATCCTGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGA
* * * *
18676725 ATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCAAAGCCGACCCATGAAACGAGC
194 ATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCATATCCCAAAGCCAACCCACGAAACGAGC
* * * * * * **
18676789 GTGC-GGCCGCTCCGCCTGTCGA-AGAGGCAGAATGCGTAAGCCGGGGATCCGCCCGGTCCCCCC
258 GTGCAGG-CACTCAGCC-GACCAGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGACCCCCCC
* *
18676852 TACGTGCTGTCGATCCTGCTG
321 TACGTACTGTCGATCCCGCTG
18676873 TCGTAACCCT
Statistics
Matches: 285, Mismatches: 51, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
354 22 0.08
355 257 0.90
356 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (354 bp):
CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
AAACGAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATACGTAAATCGAGGATCAACTCGAT
CCCCCCAGCATGCTACCGATCCTGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAAT
GAACTCCATATGCTTAGACTGGGAATGAACTCCATATCCCAAAGCCAACCCACGAAACGAGCGTG
CAGGCACTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGACCCCCCCTACGT
ACTGTCGATCCCGCTGCCAGTCCTGTTAC
Found at i:18676883 original size:184 final size:184
Alignment explanation
Indices: 18676554--18676970 Score: 473
Period size: 184 Copynumber: 2.3 Consensus size: 184
18676544 TCCGACTGGG
* * * * *
18676554 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACTCACAAAATGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCATGCGGCCGCTCAA
* * * * *
18676619 CCGTCCGGAGAGGTAGAATACGTAAATCGAGGATCAACTCGATCCCCTCTACGTGCTGCCGATCC
66 CCGTCCGAAGAGGCAGAATACGTAAACCGAGGATCAACCCGATCCCCCCTACGTGCTGCCGATCC
*
18676684 TGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACT-GGGAATGAACTCCGTAT
131 TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGA-TAGGGAATGAACTCCGTAT
* * ** * **
18676738 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCGACCCATGAAACGAGCGTGCGGCCGCTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCATGCGGCCGCTCAA
* * * ** * *
18676803 CCTGT-CGAAGAGGCAGAATGCGTAAGCCGGGGATCCGCCCGGTCCCCCCTACGTGCTGTCGATC
66 CC-GTCCGAAGAGGCAGAATACGTAAACCGAGGATCAACCCGATCCCCCCTACGTGCTGCCGATC
* * * *
18676867 CTGCTGTCGTAACCCTCGGTCCGTTCTGATCTTTGATAGGGAATGAACTCCGTAT
130 CTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGATAGGGAATGAACTCCGTAT
* * * * *
18676922 GCTTAG-C-TGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAG
18676971 GGTACGAGCA
Statistics
Matches: 194, Mismatches: 36, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
182 1 0.01
183 35 0.18
184 156 0.80
185 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCATGCGGCCGCTCAA
CCGTCCGAAGAGGCAGAATACGTAAACCGAGGATCAACCCGATCCCCCCTACGTGCTGCCGATCC
TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGATAGGGAATGAACTCCGTAT
Found at i:18677656 original size:26 final size:26
Alignment explanation
Indices: 18677639--18677748 Score: 220
Period size: 26 Copynumber: 4.2 Consensus size: 26
18677629 AATGCAATGT
18677639 GTATGCTTAGACATGGAATGAACTCC
1 GTATGCTTAGACATGGAATGAACTCC
18677665 GTATGCTTAGACATGGAATGAACTCC
1 GTATGCTTAGACATGGAATGAACTCC
18677691 GTATGCTTAGACATGGAATGAACTCC
1 GTATGCTTAGACATGGAATGAACTCC
18677717 GTATGCTTAGACATGGAATGAACTCC
1 GTATGCTTAGACATGGAATGAACTCC
18677743 GTATGC
1 GTATGC
18677749 CTAAGCCAAC
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 84 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
GTATGCTTAGACATGGAATGAACTCC
Found at i:18677924 original size:26 final size:26
Alignment explanation
Indices: 18677880--18677932 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18677870 CCGGTCTGAT
18677880 CTTAGACTAGGAATCAACTCCATATG
1 CTTAGACTAGGAATCAACTCCATATG
* * * *
18677906 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCATATG
18677932 C
1 C
18677933 CTAATTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:18678796 original size:26 final size:26
Alignment explanation
Indices: 18678755--18678807 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18678745 TCGATCCGAT
*
18678755 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
18678781 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18678807 C
1 C
18678808 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18679328 original size:33 final size:33
Alignment explanation
Indices: 18679285--18679349 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
18679275 GTTAGGCTCT
18679285 CGATCCCGCTACCACAACCCTCGGTCCGACTGC
1 CGATCCCGCTACCACAACCCTCGGTCCGACTGC
*
18679318 CGATCTCGCTACCACAACCCTCGGTCCGACTG
1 CGATCCCGCTACCACAACCCTCGGTCCGACTG
18679350 GGGCTTAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.18, C:0.46, G:0.18, T:0.17
Consensus pattern (33 bp):
CGATCCCGCTACCACAACCCTCGGTCCGACTGC
Found at i:18679538 original size:26 final size:26
Alignment explanation
Indices: 18679509--18679561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18679499 CTGATCCGAT
18679509 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18679535 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18679561 C
1 C
18679562 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18679677 original size:184 final size:182
Alignment explanation
Indices: 18679365--18679719 Score: 444
Period size: 184 Copynumber: 1.9 Consensus size: 182
18679355 TAGAAATGAA
* *
18679365 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAACCGGCTAGAGGCA
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAACCGGCGAGAGGCA
* *
18679430 GAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTACTGATGCAACCCT
66 GAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTACGTACTGCCGATCCTACTGACGCAACCCT
*
18679495 CGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
131 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* ** * ** *
18679547 ATGAACTCCGTATGCCTAAGTTAACCCATGAAAC-GAGCGTGTGGGCACTCAGTCGATCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCACTCAACCG-GC-GAGAG
* ** * * * ** *
18679611 GCATAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCGTACTGTC-ATTCCTGTTGCCGCAA
63 GCAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTACGTACTGCCGA-TCCTACTGACGCAA
* * *
18679675 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
127 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
18679720 ATAAGTCAAC
Statistics
Matches: 145, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
181 1 0.01
182 46 0.32
183 2 0.01
184 96 0.66
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (182 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAACCGGCGAGAGGCA
GAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTACGTACTGCCGATCCTACTGACGCAACCCT
CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
Found at i:18680030 original size:158 final size:158
Alignment explanation
Indices: 18679535--18680039 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 158
18679525 ACTCCGTATG
* * * * *
18679535 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGTGGGCACTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGT
* * * * * * * *
18679600 CGATCGGAGAGGCATAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCGTACTGTC-ATTCC
66 AGGTCGGAAAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGA-TCC
* * * *
18679664 TGTTGCCGCAACCCTCGGTCCGGTCTGAT
130 TGCTGCCACAACCCTCGGTCCGATCCGAT
* * * *
18679693 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGT
1 CTTAGACTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGT
* * * ** *
18679758 TGG-CCGAAGAGGCATAATGGGCAAGTCGGGGATCGACCCGATCCCCCTCTATGTGCTGCCGATC
66 AGGTCGGAA-AGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATC
* * * * * * **
18679822 CCGCAGCCACAACCCTCGATTCG-GCTGGGG
129 CTGCTGCCACAACCCTCGGTCCGATC-CGAT
* * ** * * **
18679852 CTTAGACAT-GGAATGAACTTTGTATGCTTAAGCCAACATAGGAAACGGGCGTGTGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAG
* * * *
18679916 TAGGTCGGAAAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCTGCGTGCTATCGATCC
65 TAGGTCGGAAAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
18679981 TGCTGCCCCAACCCTCGGTCTGATCCGAT
130 TGCTGCCACAACCCTCGGTCCGATCCGAT
*
18680010 CTTAGACTGGGAATGAACTTTGTATGCTTA
1 CTTAGACTGGGAATGAACTTCGTATGCTTA
18680040 GACATGGAAT
Statistics
Matches: 276, Mismatches: 63, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 150 0.54
159 116 0.42
160 6 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGT
AGGTCGGAAAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGATCCGAT
Found at i:18680060 original size:26 final size:26
Alignment explanation
Indices: 18680010--18680062 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18680000 CTGATCCGAT
**
18680010 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18680036 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18680062 C
1 C
18680063 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18680367 original size:501 final size:499
Alignment explanation
Indices: 18679329--18680610 Score: 1517
Period size: 501 Copynumber: 2.6 Consensus size: 499
18679319 GATCTCGCTA
* * * *
18679329 CCACAACCCTCGGTCCGACTGGGGCTTAGAAATGAAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTAC
* * * * * * *
18679394 GAAACAGGCGTGCGGGCGCTCAACCGG-C-TAGAGGCAGAATGCACAAGCCGAGGATCGACCCAG
66 GAAACGGGCGTGCGGGTGCTCAGCAGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCGA-
* * **
18679457 TCCCCCCTACGTGCTGCCGATCCTACTGATGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAA
130 TCCCCCCTACGTGCT-ACGATCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAA
* * * *
18679522 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGT
194 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
* * * * *
18679587 GTGGGCACTCAGTCGATCGGAGAGGCATAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCG
259 GTGGGCACTCAGCCGACCGGAGAGGCAAAATGCGTAAACCGAGGATCGACCCGATCCCCCCTGCG
* * * * * *
18679652 TACTGTCATTCCTGTTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTA
324 TACTATCATTCCTGCTGCCGCAACCCTCGGTCCGATCTAATCTTAAACTGGGAATGAACTCCGTA
* ** * **
18679717 TGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGTTGGCCGAAGAGGCATAATGGGCAA
389 TGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAA
*
18679782 GTCGGGGATCGACCCGATCCCCCTCTATGTGCTGCCGATCCCGCAG
454 GTCGGGGATCGACCCGATCCCCCTCTATGTGCTGCCGATCCCACAG
* * * *** * * *
18679828 CCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTTTGTATGCTTAAGCCAACATAG
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTAC
* * * * * *
18679893 GAAACGGGCGTGTGGGTGCTCAGTAGGTCGGAAAGGCAGAATGCGCAAGTCGGGGATCGGCCTGA
66 GAAACGGGCGTGCGGGTGCTCAGCAGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACC-GA
* *
18679958 TCCCCCCTGCGTGCTATCGATCCTGCTGCCCCAACCCTCGGTCTGATCCGATCTTAGACTGGGAA
130 TCCCCCCTACGTGCTA-CGATCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAA
* * *
18680023 TGAACTTTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCG
194 TGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
** *
18680087 TGTGGGTGCTCAGCCGACCGGAGAGGCAAAATGCGTAAATCGAGGATCGACCCGATCCCCCCCTG
258 TGTGGGCACTCAGCCGACCGGAGAGGCAAAATGCGTAAACCGAGGATCGACCCGAT-CCCCCCTG
* * *
18680152 CGTGCTATCGA-TCCTGCTGCTGTAACCCTCGGTCCGATCTAATCTTAAACTGGGAATGAACTCC
322 CGTACTATC-ATTCCTGCTGCCGCAACCCTCGGTCCGATCTAATCTTAAACTGGGAATGAACTCC
* * *
18680216 GTATGCCTAAGTCAATCCATGAAATGAGCGT-CTAGGCACTGAGCCGACCGGAAG-GGCATAATG
386 GTATGCATAAGTCAACCCACGAAATGAGCGTGC-AGGCACTGAGCCGACC-GAAGAGGCATAATG
* * * * * * *
18680279 CATAAG-CTGGGG-TCGGCTCGGTCCCCCTCTGTGTGCTGCCGGTCCCACTG
449 CACAAGTC-GGGGATCGACCCGATCCCCCTCTATGTGCTGCCGATCCCACAG
* * *
18680329 CGACAACCCTTGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCT-
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCTA
* * * *
18680393 CGAAATGGGAGTGCGGGTGCTCAGCCA-GTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAACCC
65 CGAAACGGGCGTGCGGGTGCTCAG-CAGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CC
* * * * * *
18680457 GGTCCCTCCTACGTGCTACGGATCATGTTGCCGCAACCCTCGGTCTGAACCGATCTTAGATTGGG
128 GATCCCCCCTACGTGCTAC-GATCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGG
* ** *
18680522 AATGAACTCTGTATGCTTAGATTGGGGATGAACTTTGTATGCCTAAGTCAACCC-CAAAATGAGC
192 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
* *
18680586 GTAG-GGGCACTCAACCGATCGGAGA
257 GT-GTGGGCACTCAGCCGACCGGAGA
18680611 AGGAGAGGCA
Statistics
Matches: 654, Mismatches: 113, Indels: 31
0.82 0.14 0.04
Matches are distributed among these distances:
499 74 0.11
500 31 0.05
501 420 0.64
502 124 0.19
503 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (499 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTAC
GAAACGGGCGTGCGGGTGCTCAGCAGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCGAT
CCCCCCTACGTGCTACGATCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATG
AACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGT
GGGCACTCAGCCGACCGGAGAGGCAAAATGCGTAAACCGAGGATCGACCCGATCCCCCCTGCGTA
CTATCATTCCTGCTGCCGCAACCCTCGGTCCGATCTAATCTTAAACTGGGAATGAACTCCGTATG
CATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGT
CGGGGATCGACCCGATCCCCCTCTATGTGCTGCCGATCCCACAG
Found at i:18680473 original size:158 final size:158
Alignment explanation
Indices: 18680035--18680480 Score: 413
Period size: 158 Copynumber: 2.8 Consensus size: 158
18680025 AACTTTGTAT
* *
18680035 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAATGAGCGTGCGGGTGCTCAG
** * *
18680100 CCGACCGGAGAGGCAAAATGCGTAAATCGAGGATCGACCCGATCCCCCCCTGCGTGCTATCGATC
66 CCGACCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACCCGGT-CCCCCCTGCGTGCTACCGATC
** *
18680165 CTGCTGCTGTAACCCTCGGTCCGATCTAA
130 CCACTGCTGCAACCCTCGGTCCGATCTAA
* * * * * **
18680194 TCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCAATCCAT-GAAATGAGCGT-CTAGGCACT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA-CCCTCGAAATGAGCGTGC-GGGTGCT
* * * * * * * * *
18680256 GAGCCGACCGGA-AGGGCATAATGCATAAGCTG-GGGTCGGCTCGGTCCCCCTCTGTGTGCTGCC
63 CAGCCGACCGGAGA-GGCAAAATGCGTAAGCCGAGGATCGACCCGGTCCCCC-CTGCGTGCTACC
* * **
18680319 GGTCCCACTGC-GACAACCCTTGGTCCGAT-TGGG
126 GATCCCACTGCTG-CAACCCTCGGTCCGATCT-AA
* * *
18680352 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTCGAAATGGGAGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAATGAGCGTGCGGGTGCTCAG
* * * * * *
18680417 CC-AGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAACCCGGTCCCTCCTACGTGCTACGGATC
66 CCGA-CCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
18680481 ATGTTGCCGC
Statistics
Matches: 220, Mismatches: 54, Indels: 27
0.73 0.18 0.09
Matches are distributed among these distances:
157 11 0.05
158 120 0.55
159 87 0.40
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAATGAGCGTGCGGGTGCTCAG
CCGACCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCC
CACTGCTGCAACCCTCGGTCCGATCTAA
Found at i:18680540 original size:26 final size:26
Alignment explanation
Indices: 18680511--18680563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18680501 CTGAACCGAT
18680511 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
* *
18680537 CTTAGATTGGGGATGAACTTTGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
18680563 C
1 C
18680564 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.11, G:0.28, T:0.36
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTGTATG
Found at i:18683608 original size:158 final size:156
Alignment explanation
Indices: 18683179--18683608 Score: 425
Period size: 159 Copynumber: 2.7 Consensus size: 156
18683169 AGTCAGCCGG
* * * * * ****
18683179 AGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCTCCTGCATGCTATCGATCCTGCTATTG
1 AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCC-CCTGCGTGCTGTCGATCCTGCTGCCA
* * *
18683244 CAACCCCCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
65 CAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* *
18683309 ACGAGCGTGCGTGCACTGAGCCGGCCAA
129 ACGAGCGTGCGGGCACTCAGCCGGCCAA
* * * * *
18683337 AGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTTTGCGTGCTGTC-AGTCCCGCAGC
1 AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC--TGCGTGCTGTCGA-TCCTGCTGC
* * * ** ** * *
18683401 CACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
63 CACAACCCTCGGTCTGGTCCGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * *
18683466 AAATGGGCGTGCGGGCGCTCAGCTGG-CAGGA
127 AAACGAGCGTGCGGGCACTCAGCCGGCCA--A
* * *
18683497 A-AGGCAGAATGCGCAAGCTAGGGATTGGCCTGGTCTCCCCTGCGTGCTGTCGATCCTGCTGCCA
1 AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTC-CCCCTGCGTGCTGTCGATCCTGCTGCCA
*
18683561 CAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
65 CAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGC
18683609 TTAGACTGAA
Statistics
Matches: 215, Mismatches: 48, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 92 0.43
159 113 0.53
160 7 0.03
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
AACCCTCGGTCTGGTCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
GAGCGTGCGGGCACTCAGCCGGCCAA
Found at i:18685279 original size:26 final size:26
Alignment explanation
Indices: 18685250--18685302 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18685240 CCGATCCGAT
*
18685250 CTTAGACT-GGGAATGAATTCCGTATG
1 CTTAGACTGGGGAA-GAACTCCGTATG
18685276 CTTAGACTGGGGAAGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
18685302 C
1 C
18685303 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:18685979 original size:26 final size:26
Alignment explanation
Indices: 18685941--18685993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18685931 GGCTCAAAAT
**
18685941 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
18685967 CTTAGACAAGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
18685993 C
1 C
18685994 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:18687226 original size:315 final size:310
Alignment explanation
Indices: 18686655--18687493 Score: 826
Period size: 315 Copynumber: 2.7 Consensus size: 310
18686645 TTGATCTTAG
** * ** **
18686655 ACTGGGAATGAACTCCGTATCCTTAGACATGGAATGAACTTTGTATGCCTAAAACAA-CCAACAA
1 ACTGGGAATGAACTCCGTATGTTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAA
* * * * *
18686719 AATGAGTGTGCGGGCACTCAGCTGGCCGGAGAGGCAGAATACGTAAGTCGAGGATTGGCTCGATC
66 AATGA--GTGCCGGCACTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATC
* * * *
18686784 CCC-CCTTCGTGCTATCGATCCTGCTGTCGCAACCCTCAG-CCTGGTCTGATCTTAGACTAGGAA
129 CCCTCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGTCC-GATCTGATCTTAGACTGGGAA
* *
18686847 TGAACTCCGTATGCCAAAGTCAACCCATGAAACGAACGCGCGGGCGCTAAGCCAATCGGAGAGGC
193 TGAACTCCGTATGCCAAAGTCAACCCACGAAACGAACGCGCGGGCGCTAAGCCAATCAGAGAGGC
* * *
18686912 ATAATGCGCAAGCCGAAGATCGGTCCGGTCCCCCTCTGCATGCTGTCAATCTCGC
258 ATAATGCGCAAGCCGAAGATCGATCCAGTCCCCCTCTGCATGCTATCAATCT--C
**
18686967 TACTGGGAATGAACTTTGTATGTTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGA
1 -ACTGGGAATGAACTCCGTATGTTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGA
* * * * * *
18687032 AAATGAGTGACCGAGCACTCAGCCGGTCGGAGAGGTAAAATGCGTATGCCGAGGATCGGCCCGGT
65 AAATGAGTG-CCG-GCACTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGAT
* **
18687097 CCCCTCCTACGTGCTATCGATCCTACTGTCGCAACCCTCTGTCCGATCCAATCTTAGACTGGGAA
128 CCCCTCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAA
** * * * ** *
18687162 TGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGGGCC-TTCCAGAGAGG
193 TGAACTCCGTATGCCAAAGTCAACCCACGAAACGAACGCGCGGGCGCTAAGCCAAT-CAGAGAGG
* *** * ** * *
18687226 CCTAATGTTTAAGTCGGGGATCGATCCAGTCCCCCTCTGCGTGCTATCGATCTC
257 CATAATGCGCAAGCCGAAGATCGATCCAGTCCCCCTCTGCATGCTATCAATCTC
** * * **
18687280 ACTGCCACA--ACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
1 ACTGGGA-ATGA-ACTCCGT---A-T---GTTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
** * * * * * * *
18687343 ACCCATGAAACGGGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCATAAGCTGGGGATCG
57 ACCCATGAAA-ATGAGTGCCGGCACTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCG
* * * * * * *
18687408 ACTCGATCCTCTCCTACGTGCTACCAATCCTACTGTCACAACCCTCGGTTCGATCTGATCTTAGA
121 GCTCGATCCCCTCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCTGATCTTAGA
18687473 CTGGGAATGAACTCCGTATGC
186 CTGGGAATGAACTCCGTATGC
18687494 TTAGACTGGG
Statistics
Matches: 430, Mismatches: 80, Indels: 27
0.80 0.15 0.05
Matches are distributed among these distances:
311 1 0.00
312 12 0.03
313 54 0.13
314 56 0.13
315 144 0.33
316 3 0.01
318 110 0.26
319 46 0.11
320 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (310 bp):
ACTGGGAATGAACTCCGTATGTTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAA
AATGAGTGCCGGCACTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATCCC
CTCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCAAAGTCAACCCACGAAACGAACGCGCGGGCGCTAAGCCAATCAGAGAGGCATA
ATGCGCAAGCCGAAGATCGATCCAGTCCCCCTCTGCATGCTATCAATCTC
Found at i:18687404 original size:159 final size:158
Alignment explanation
Indices: 18686988--18687493 Score: 418
Period size: 159 Copynumber: 3.2 Consensus size: 158
18686978 AACTTTGTAT
* * * *
18686988 GTTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAA--ATGAGTGACCGAGCACT
1 GTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTG-CAG-GCGCT
** * * * * * * *
18687051 CAGCCGGTCGGAGAGGTAAAATGCGTATGCCGAGGATCGGCCCGGTCCCCTCCTACGTGCTATCG
63 CAGCCGACCGGAGAGGCAAAATGCATAAGCTGGGGATCGACCCAGTCCCCTCCTACGTGCTATCG
* * *
18687116 ATCCTACTGTCGCAACCCTCTGTCCGATCCA
128 ATCCTACTGCCACAACCCTCGGTCCGATCCA
* * * * ** *
18687147 ATCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTG
1 GT-TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTC
* ** * ** ** * *
18687211 GGCCTTCCAGAGAGGCCTAATGTTTAAG-TCGGGGATCGATCCAGTCCCC-CTCTGCGTGCTATC
64 AGCCGACCGGAGAGGCAAAATGCATAAGCT-GGGGATCGACCCAGTCCCCTC-CTACGTGCTATC
***
18687274 GAT-CTCACTGCCACAACCCTCGGTCCGACTGGG
127 GATCCT-ACTGCCACAACCCTCGGTCCGA-TCCA
* *
18687307 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
1 GTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * * *
18687372 CCGACCGGAGAGGCAGAATGCATAAGCTGGGGATCGACTC-GATCCTCTCCTACGTGCTACCAAT
66 CCGACCGGAGAGGCAAAATGCATAAGCTGGGGATCGACCCAG-TCCCCTCCTACGTGCTATCGAT
* * *
18687436 CCTACTGTCACAACCCTCGGTTCGAT-CT
130 CCTACTGCCACAACCCTCGGTCCGATCCA
18687464 GATCTTAGAC-TGGGAATGAACTCCGTATGC
1 G-T-TTAGACAT-GGAATGAACTCCGTATGC
18687494 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 61, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 1 0.00
158 7 0.03
159 211 0.78
160 46 0.17
161 4 0.01
162 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (158 bp):
GTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCAAAATGCATAAGCTGGGGATCGACCCAGTCCCCTCCTACGTGCTATCGATC
CTACTGCCACAACCCTCGGTCCGATCCA
Found at i:18687503 original size:26 final size:26
Alignment explanation
Indices: 18687467--18687519 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18687457 TCGATCTGAT
*
18687467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18687493 CTTAGACTGGGGATGAGCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18687519 C
1 C
18687520 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18688750 original size:25 final size:26
Alignment explanation
Indices: 18688713--18688764 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
18688703 CTGGTCCGAT
18688713 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18688738 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18688764 C
1 C
18688765 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18689032 original size:159 final size:158
Alignment explanation
Indices: 18688738--18689240 Score: 514
Period size: 159 Copynumber: 3.2 Consensus size: 158
18688728 AACTCGTATG
* * * *
18688738 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGAGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGCGGGCGCTCAGC
* ** * * ** *
18688803 CGGTCGGAGAGGTAGAATGCGTAAATCGAGGATTGGCCTAAT-CCCTCTCTGCGTGCTGTCGATC
66 CGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCT-TCTGCGTGCTGCCGATC
*
18688867 CTGCTACCACAACCCTCGGGTTGATCCGAT
130 CTGCTACCACAACCCTC-GGTCGATCCGAT
* * * *
18688897 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGCGGGCGCTCAG
* * * * * * * *
18688961 CTGATCGGAGAGGCATAATGGGCAAGCCGGGGATCGACCCGATCCCCTTCTGCATGCTGCCGGTC
65 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTGCCGATC
* * * **
18689026 CCGCTACCACAACCCTCAGTCCGGAT-GGGG
130 CTGCTACCACAACCCTCGGT-C-GATCCGAT
* * * *
18689056 CTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCATGAAACGG-GCATGCGGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GGAGCGTGCGGGCGCTCAG
* * * *
18689120 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCC-CCTTCGTGCTGCCGATT
65 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTGCCGATC
* * *
18689184 CTGCTACCGCAACCCTCGGTCCAGTCCAAT
130 CTGCTACCACAACCCTCGGTCGA-TCCGAT
*
18689214 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
18689241 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 60, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 55 0.20
159 206 0.75
160 10 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTGCCGATCC
TGCTACCACAACCCTCGGTCGATCCGAT
Found at i:18689250 original size:26 final size:26
Alignment explanation
Indices: 18689214--18689266 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18689204 CCAGTCCAAT
*
18689214 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18689240 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18689266 C
1 C
18689267 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18690276 original size:26 final size:26
Alignment explanation
Indices: 18690240--18690292 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18690230 CCGATCCGAT
18690240 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18690266 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18690292 C
1 C
18690293 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18690390 original size:184 final size:188
Alignment explanation
Indices: 18690081--18690518 Score: 469
Period size: 184 Copynumber: 2.3 Consensus size: 188
18690071 TCCGGCTGGG
* * * *
18690081 GCTTAGACATGAAATGAACTCCCTATGGCTAAGCCAACCCACGAAACG-GTCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGTGCCCA
* ***
18690145 GCCGACCGGAGAGGCAGAATGCGTCAGTCGGGGATCGGTTCGATCCCCCCTGCGTGCTACCGA-T
65 GCCGACCGGAGAGGCAGAATGCGTCAGTCGGGGACCGACCCGATCCCCCCTGCGTGCTACCGACT
* *
18690209 -C-T-TGCTACCGTAACTCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
130 GCGTCTGCTACCGTAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
* *
18690265 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCCCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCCCA
** ** * *
18690329 GTTGGTCGGAGAGGCTGAATGCG-CAAG-CTGGGGACCGACCCGATCCCCCCTGTGTGCTACCGA
65 GCCGACCGGAGAGGCAGAATGCGTC-AGTC-GGGGACCGACCCGATCCCCCCTGCGTGCTACCGA
* * * * *
18690392 TCCTGCTGCTGGTCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCT
128 -----CTGC--GT-CTGCTACCGTAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCC
*
18690457 GTAT
185 ATAT
* * *
18690461 GGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
18690519 CGCTCAATAA
Statistics
Matches: 208, Mismatches: 29, Indels: 22
0.80 0.11 0.08
Matches are distributed among these distances:
183 3 0.01
184 103 0.50
185 1 0.00
190 1 0.00
191 1 0.00
194 1 0.00
196 97 0.47
197 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (188 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCCCAG
CCGACCGGAGAGGCAGAATGCGTCAGTCGGGGACCGACCCGATCCCCCCTGCGTGCTACCGACTG
CGTCTGCTACCGTAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
Found at i:18690466 original size:26 final size:26
Alignment explanation
Indices: 18690437--18690487 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18690427 TGGTCTGATC
*
18690437 TTAGAC-TGGGAATGAACTCTGTATGG
1 TTAGACAT-GGAATGAACTCCGTATGG
18690463 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
18690488 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:18690572 original size:196 final size:196
Alignment explanation
Indices: 18690211--18690573 Score: 442
Period size: 196 Copynumber: 1.9 Consensus size: 196
18690201 CTACCGATCT
* *
18690211 TGCTACCGTAACTCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAG
1 TGCTACCGTAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAG
* * * * ***
18690276 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCCCAGTTGGTCGGAGA
66 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAATAAATCGGAGA
* * * *
18690341 GGCTGAATGCGCAAGCTGGGGACCGACCCGATCCCCCCTGTGTGCTACCGATCCTGCTGCTGGTC
131 GGCTGAACGCGCAAGCCGAGGACCGACCAGATCCCCCCTGTGTGCTACCGATCCTGCTGCTGGTC
18690406 C
196 C
* * * * ** *
18690407 TGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGAC-AT
1 TGCTACCGTAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTA-
* * *
18690471 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAATAAATCGGAG
65 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAATAAATCGGAG
* * * * *
18690536 AGG-TAGAACGTGTAAGCCGAGTACCGGCTAGATCCCCC
130 AGGCT-GAACGCGCAAGCCGAGGACCGACCAGATCCCCC
18690574 TTACGTGCTG
Statistics
Matches: 137, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
195 2 0.01
196 135 0.99
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
TGCTACCGTAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAG
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAATAAATCGGAGA
GGCTGAACGCGCAAGCCGAGGACCGACCAGATCCCCCCTGTGTGCTACCGATCCTGCTGCTGGTC
C
Found at i:18690940 original size:26 final size:26
Alignment explanation
Indices: 18690911--18690963 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18690901 CCGGTCTAAT
18690911 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
18690937 CTTAGACTGGGGATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18690963 C
1 C
18690964 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18692637 original size:25 final size:26
Alignment explanation
Indices: 18692594--18692643 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
18692584 AGTTTGATCT
18692594 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
*
18692620 TAGATTGGG-ATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
18692644 TTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCC
Found at i:18693022 original size:798 final size:800
Alignment explanation
Indices: 18691484--18693034 Score: 2177
Period size: 798 Copynumber: 1.9 Consensus size: 800
18691474 TATTAGATTG
* * * * *
18691484 GGAATGAACTCTGTATGCCTAAGACAACCCCTGAAATGAGCGTGCGAGCACTGAATAGGTCGAAG
1 GGAATGAACTCTGTATGCCTAAGACAACCCATGAAATGAGCATACGAGCACTCAACAGGTCGAAG
* * *
18691549 AGGCATAATGCGCAAGCCGGGGATCAGCCCCGCCCCACTCTGCGTGCTGTCGATCCCGCTGCCAC
66 AGGCAGAATGCGCAAGCCGAGGATCAGCCCCGCCCCACTCTGCATGCTGTCGATCCCGCTGCCAC
* ** * * **
18691614 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAATCCAACCCAGGAAA
131 AACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA
* * * * *
18691679 CAGGCATACGGGCACTCAGTCGGTCGGAGAGGCAAAATGCACAATCCGAGGATCGAGCTGATCCT
196 CAAGCATACGGGCACTCAGCCGGCCGGAGAGGCAAAATGCACAAGCCAAGGATCGAGCTGATCCT
* * * * *
18691744 CCCTGCGTACTGTCGATCCTGCTATCGTAACCCTCAGTCCTGTCTGATCTGAGACTGGGAATGAA
261 CCCTGCATACTGACGATCCTACTATCGCAACCCTCAATCCTGTCTGATCTGAGACTGGGAATGAA
* * * **
18691809 CTCTGTATGCTTAGACTAAGGATTAACTTCGTATTCCTAAGTCAACCCATGAAACGAGCGTACGA
326 CTCTGTATGCCTAGACTAAGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGA
* *
18691874 ACGCTCAATCGACCAGAGAGGCAGGTTGCGCAAGCCGACGATCAAACGGGTGGTAGGTGGGTTGA
391 ACGCTCAATCGACCAGAGAGGCAGGGTGCGCAAGCCGACGATCAAACGGGTGGTAGGTGGGTTCA
* **
18691939 AGCACATCTTCAAATTTCTGCCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATTTTC
456 AGCACATCTTCAAATTTCTGCCATGCCAAAGCCATTTTTATGACTTGTAAATTCATACAATGGTC
* *
18692004 CCCTAAGCCTTCATGTGAAGTTTCTTGGCAAGACTACCCGTTTTCTATTTTTCATGATTTTTGAA
521 CCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAA
* ** * *
18692069 ACTTTTTATGGTTTGGGATTTTTTTAAATTTTTTTAGAAATAGTTGTTCCCCCAAATTTGGTAAA
586 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAGTTGTTCCCCCAAATTTGGTAAA
* * *
18692134 GGTGATCCTTTTATTTTTGTGGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTAGAGAAGA
651 GGTGATCCCTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTAGAGAAGA
* *
18692199 TTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTTAGACTGGCCACGAAACGAAACGAGCGTGCGG
716 TTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACTGGCCACGAAACGAAACGAGCGTGCGG
18692264 GCATGCGGGTGCTCAGACAT
781 GCATGCGGGTGCTCAGACAT
* * * *
18692284 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCATACGAGCACTCAGCCGGTCGGAG
1 GGAATGAACTCTGTATGCCTAAGACAACCCATGAAATGAGCATACGAGCACTCAACAGGTCGAAG
* * * * * *
18692349 AGGTAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCTCTCTGCATGCTGTCGATCCCGCTGCCAT
66 AGGCAGAATGCGCAAGCCGAGGATCAGCCCCGCCCCACTCTGCATGCTGTCGATCCCGCTGCCAC
* *
18692414 AACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCTACAAAA
131 AACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA
* * ** * ** *
18692479 CAAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAAAATGTGCAAGCCAAGGATCGA-TTCGATCC
196 CAAGCATACGGGCACTCAGCCGGCCGGAGAGGCAAAATGCACAAGCCAAGGATCGAGCT-GATCC
* * * *
18692543 -CCCTTGCATGCT-ACAGATCCTACTGTCGCAACCCTCAAT-CTAGTTTGATCTTAGACTGGGAA
260 TCCC-TGCATACTGAC-GATCCTACTATCGCAACCCTCAATCCT-GTCTGATCTGAGACTGGGAA
** *
18692605 TGAACTCTGTATGCCTAGA-TTGGGATGAAC-TCTGTATGCTTAAGTCAACCCACAAAACGAGCG
322 TGAACTCTGTATGCCTAGACTAAGGATGAACTTC-GTATGCCTAAGTCAACCCACAAAACGAGCG
* * *
18692668 TGC-ACACGCTCAA-CTGACC-GAGAGGCAGGGTGCGCAAGCCGAGGATCAAATGGGTGGTAGGT
386 TACGA-ACGCTCAATC-GACCAGAGAGGCAGGGTGCGCAAGCCGACGATCAAACGGGTGGTAGGT
* *
18692730 GGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGACTTGTAAATTCATAC
449 GGGTTCAAGCACATCTTCAAATTTCTGCCATGCCAAAGCCATTTTTATGACTTGTAAATTCATAC
18692795 AATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGAT
514 AATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGAT
*
18692860 TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAGTT-TTGTCCCCAAAT
579 TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAGTTGTT-CCCCCAAAT
* * * * *
18692924 TTGGTAGAGGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGT
643 TTGGTAAAGGTGATCCCTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
* *
18692989 GGAGAATATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGAC
708 AGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGAC
18693035 ACTTTAATGG
Statistics
Matches: 656, Mismatches: 87, Indels: 18
0.86 0.11 0.02
Matches are distributed among these distances:
797 2 0.00
798 320 0.49
799 55 0.08
800 279 0.43
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (800 bp):
GGAATGAACTCTGTATGCCTAAGACAACCCATGAAATGAGCATACGAGCACTCAACAGGTCGAAG
AGGCAGAATGCGCAAGCCGAGGATCAGCCCCGCCCCACTCTGCATGCTGTCGATCCCGCTGCCAC
AACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA
CAAGCATACGGGCACTCAGCCGGCCGGAGAGGCAAAATGCACAAGCCAAGGATCGAGCTGATCCT
CCCTGCATACTGACGATCCTACTATCGCAACCCTCAATCCTGTCTGATCTGAGACTGGGAATGAA
CTCTGTATGCCTAGACTAAGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGA
ACGCTCAATCGACCAGAGAGGCAGGGTGCGCAAGCCGACGATCAAACGGGTGGTAGGTGGGTTCA
AGCACATCTTCAAATTTCTGCCATGCCAAAGCCATTTTTATGACTTGTAAATTCATACAATGGTC
CCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAGTTGTTCCCCCAAATTTGGTAAA
GGTGATCCCTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTAGAGAAGA
TTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACTGGCCACGAAACGAAACGAGCGTGCGG
GCATGCGGGTGCTCAGACAT
Found at i:18693254 original size:11 final size:11
Alignment explanation
Indices: 18693222--18693246 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18693212 CGGTTAGGCT
18693222 CTCCGACGATG
1 CTCCGACGATG
18693233 CTCCGACGATG
1 CTCCGACGATG
18693244 CTC
1 CTC
18693247 TGGCGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:18693382 original size:32 final size:26
Alignment explanation
Indices: 18693324--18693376 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18693314 GGCTTAAACT
18693324 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18693350 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18693376 C
1 C
18693377 CTATGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18693637 original size:158 final size:158
Alignment explanation
Indices: 18693349--18693692 Score: 415
Period size: 158 Copynumber: 2.2 Consensus size: 158
18693339 AACTCCGTAT
* *
18693349 GCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCCACAAAACGAGAAGCGGGCGCTCAAC
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACACAAAACGAGAAGCGGGCGCTCAAC
* * * *
18693414 CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCACCTCTACGTGCTGCCGATCC
66 CGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCACCCCTACATGCTACCGATCC
* * * *
18693479 TGCTGCCACAACCCTTAGTCCGGT-TGGG
131 TGCTACCACAACCCTCAGTCCAGTCT-GA
* * * *
18693507 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACACACGAAAC-AGGAGTGCGGGCGCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACACAAAACGA-GA-AGCGGGCGCTCA
* * * * ** * *
18693571 CCCGGTCGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCTTGGTCC-CCCCTACATGTTACCGAT
64 ACCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCACCCCTACATGCTACCGAT
* *
18693635 CCTGCTACCGCAACCCTCGGTCCAGTCTGA
129 CCTGCTACCACAACCCTCAGTCCAGTCTGA
*
18693665 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
18693693 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 1 0.01
158 105 0.67
159 50 0.32
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACACAAAACGAGAAGCGGGCGCTCAAC
CGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCACCCCTACATGCTACCGATCC
TGCTACCACAACCCTCAGTCCAGTCTGA
Found at i:18693702 original size:26 final size:26
Alignment explanation
Indices: 18693666--18693718 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18693656 CCAGTCTGAT
18693666 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18693692 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18693718 C
1 C
18693719 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18693913 original size:26 final size:26
Alignment explanation
Indices: 18693875--18693927 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18693865 CCAATCTGAT
18693875 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18693901 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18693927 C
1 C
18693928 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18695070 original size:26 final size:26
Alignment explanation
Indices: 18695034--18695086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18695024 CTAGCCGGAT
* *
18695034 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
*
18695060 CTTAAACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
18695086 C
1 C
18695087 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:18696134 original size:26 final size:26
Alignment explanation
Indices: 18696096--18696148 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18696086 GGCTCAAAAT
18696096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18696122 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18696148 C
1 C
18696149 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18696534 original size:159 final size:159
Alignment explanation
Indices: 18696121--18696561 Score: 484
Period size: 159 Copynumber: 2.8 Consensus size: 159
18696111 AACTCCGTAT
* **
18696121 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGTGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18696186 -CGGTCGGAGATGCAGAATGCGCAAGCTGGGGATCAACCC-ACTCCCCCT-TGCGTGCTGTTGAT
66 CCGGTCGGAGAGGCTGAATGCGCAAGCTGGGGATCAGCCCGA-TCCCCCTCTGCGTGCTGTCGAT
* *
18696248 CCTACTACCACAACCATCGGTCCGATCTGA
130 CCTACTACCACAACCATCGATCCGAGCTGA
* * * * *
18696278 TCTTAGAC-TAGGAATGAACT-CCTATGCGTAAGTCAATCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
18696341 GCCGATCGAAGAGGAAT-AATGCGTAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTTCTGTCGG
65 GCCGGTCGGAGAGG-CTGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGA
* * * *
18696405 TCCTGCTACCACAACCCTCTATCC-AGCTAGG
129 TCCTACTACCACAACCATCGATCCGAGCT-GA
* * * * *
18696436 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
18696501 CCGGTCGGAGAGGCTGAATTCGCAAGCCAGGGATCGGACCGATCCCCC-CTGCGTGCTGTCG
66 CCGGTCGGAGAGGCTGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCG
18696562 CAACCCTCGG
Statistics
Matches: 232, Mismatches: 43, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
156 38 0.16
157 58 0.25
158 62 0.27
159 74 0.32
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCTGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
CTACTACCACAACCATCGATCCGAGCTGA
Found at i:18698480 original size:159 final size:157
Alignment explanation
Indices: 18698184--18698687 Score: 507
Period size: 159 Copynumber: 3.2 Consensus size: 157
18698174 GTGGCTCAAA
* * * * *
18698184 ATCTTAGACTGGGAATGAACTCCGTATGCCTAGGCCATCCCCCGAAACGAGCATGCGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * *
18698249 GTCAATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGT-CCCCTCCTGCGTGCTGTCGA
66 GCCGACCGGAGAGGCAGAATGCGCAAGTC-GGGATCGACCC-GTCCCCCT-CTGCGTGCTATCGG
18698313 TCCTGCTGCCACAACCCTCGGTCTGGTCTG
128 TCCTGCTGCCACAACCCTCGGTCTGGTCTG
* * * * * *
18698343 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCATTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * *
18698408 GCCGACCGAAGAGGCATAATGCGCAAGTCGAGGATC-AGCCCAGTCCCCCTCTGCGTGCTACCGG
66 GCCGACCGGAGAGGCAGAATGCGCAAGTCG-GGATCGA-CCC-GTCCCCCTCTGCGTGCTATCGG
*
18698472 TCCCGCTGCCACAACCCTCGGTCTGG-CTGG
128 TCCTGCTGCCACAACCCTCGGTCTGGTCT-G
** * * * * *
18698502 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGTGGGCACTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * *
18698566 AGCCGGCTGGAGAGGCCGAATGCGCAAGTCGGGATCGACTCGATCCCCC-CTACGTGCTATCGGT
65 AGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGATCGACCCG-TCCCCCTCTGCGTGCTATCGGT
* * * * *
18698630 CCTACTG-CAGCAACCCTCGATCCGATCCG
129 CCTGCTGCCA-CAACCCTCGGTCTGGTCTG
**
18698659 ATCTTAGGTTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
18698688 TTAGACTAGG
Statistics
Matches: 280, Mismatches: 55, Indels: 22
0.78 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 54 0.19
158 18 0.06
159 199 0.71
160 6 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
GCCGACCGGAGAGGCAGAATGCGCAAGTCGGGATCGACCCGTCCCCCTCTGCGTGCTATCGGTCC
TGCTGCCACAACCCTCGGTCTGGTCTG
Found at i:18699432 original size:26 final size:26
Alignment explanation
Indices: 18699381--18699433 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18699371 GGCTCAAAAT
* *
18699381 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18699407 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18699433 C
1 C
18699434 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18699740 original size:158 final size:158
Alignment explanation
Indices: 18699406--18699908 Score: 433
Period size: 158 Copynumber: 3.2 Consensus size: 158
18699396 AACTTCGTAT
* * * * * * *
18699406 GCTTAGAC-ATGGAATGAACTCCATATGCCTAATCCAACCCACGAAATGAGCGTGCAGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCAACGAAACGAGCATGCGGGCACTCA
*** * * * * * * * * **
18699470 GCCTATCGAAGAGGTAGAATGGGCAAGTCGGGGATCGGCCCGGTCCCACCTTGTGTGCTGTTGAT
65 GCCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCC-CCTTGCGTGCTGCCGAT
** * *** * * *
18699535 CTTGCTACTGTAACTCTCAGTCTG-GTCTGA
129 CCCGCTGCCACAACCCTCGGTCCGAG-CTGA
* * * * *
18699565 TCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCAATGAAACGAGCATGCGGGCACTGAG
1 GCTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCAACGAAACGAGCATGCGGGCACTCAG
* * * *
18699630 CCGGCCGAAGAGGCACAATGCTCAATCTA-GGATCGACCCAGTCCCCCTCTGCGTGCTGCC-AGT
66 CCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCT-TGCGTGCTGCCGA-T
*
18699693 CCCGCTGCCACAACCCTCGGTCCG-GCTGGG
129 CCCGCTGCCACAACCCTCGGTCCGAGCT-GA
* * * * *
18699723 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCAACGAAACGAGCATGCGGGCACTCA
* * *
18699787 GCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTTGCGTGCTGTCGATC
65 GCCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTTGCGTGCTGCCGATC
** *
18699852 TTGCTGCCACAACCCTCGGTCCGATCTGA
130 CCGCTGCCACAACCCTCGGTCCGAGCTGA
* *
18699881 TCTTAGACTAGGAATGAACTCCGTATGC
1 GCTTAGACTAGGAATGAACTCCATATGC
18699909 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
157 6 0.02
158 176 0.64
159 92 0.34
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCAACGAAACGAGCATGCGGGCACTCAG
CCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTTGCGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGAGCTGA
Found at i:18699911 original size:26 final size:26
Alignment explanation
Indices: 18699882--18699986 Score: 158
Period size: 26 Copynumber: 4.0 Consensus size: 26
18699872 CCGATCTGAT
18699882 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18699908 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18699934 CCTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18699960 CTTAG-CCATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
18699986 C
1 C
18699987 CTAAGCCAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
25 2 0.03
26 69 0.97
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18700295 original size:159 final size:158
Alignment explanation
Indices: 18699966--18700323 Score: 398
Period size: 158 Copynumber: 2.3 Consensus size: 158
18699956 TATGCTTAGC
** * * *
18699966 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTTAGTCAACCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTGAGCCAACCG
* * * *
18700031 GAGAGGAAGAATGCACAAGCTGGGGATCGGCCCAGTCCCCCCTGCATGCTATCGATCCTACTGCC
66 AAGAGGAAGAATGCACAAGCTAGGGACCGGCCCAGTCCCCCCTGCATGCTATCGATCCCACTGCC
* * * *
18700096 TCAACCCTCGGTCCAGTCCAATCTTAGA
131 ACAACCCTCGGTCCAGGCCAAGCTTACA
* * * * **
18700124 C-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCATACGGGTGCTGAGCCGGCC
1 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTGAGCCAACC
* * * * * * *
18700188 GAAGAGGCATAATGCGCAAG-TCAGGGACCGGCCCGATTCCCCTCTGCATGCTGTCGATCCCGCT
65 GAAGAGGAAGAATGCACAAGCT-AGGGACCGGCCC-AGTCCCCCCTGCATGCTATCGATCCCACT
* *
18700252 GCCACAACCCTCGGTCC-GGCTAGGGCTTACA
128 GCCACAACCCTCGGTCCAGGCCA-AGCTTACA
*
18700283 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
18700324 GGCGTGCGGG
Statistics
Matches: 163, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 80 0.49
159 80 0.49
160 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.25, T:0.18
Consensus pattern (158 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTGAGCCAACCG
AAGAGGAAGAATGCACAAGCTAGGGACCGGCCCAGTCCCCCCTGCATGCTATCGATCCCACTGCC
ACAACCCTCGGTCCAGGCCAAGCTTACA
Found at i:18700355 original size:159 final size:156
Alignment explanation
Indices: 18699966--18700373 Score: 397
Period size: 159 Copynumber: 2.6 Consensus size: 156
18699956 TATGCTTAGC
** * ** *
18699966 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTTAGTCAACCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTC-GGCA
* * * * *
18700031 GAGAGGAAGAATGCACAAGCTGGGGATCGGCCCAGTCCCCCCTGCATGCTATCGATCCTACTGCC
65 GAGAGGCAGAATGCGCAAGC-AGGGACCGGCCCAGTCCCCCCTGCATGCTATCGATCCCACTGCC
* * * *
18700096 TCAACCCTCGGTCCAGTCCAATCTTAGA
129 ACAACCCTCGGTCCAGGCCAAGCTTACA
* * * * * * * *
18700124 C-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCATACGGGTGCTGAGCCGGCC
1 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGCA
* * * * *
18700188 GAAGAGGCATAATGCGCAAGTCAGGGACCGGCCCGATTCCCCTCTGCATGCTGTCGATCCCGCTG
65 G-AGAGGCAGAATGCGCAAG-CAGGGACCGGCCC-AGTCCCCCCTGCATGCTATCGATCCCACTG
* *
18700253 CCACAACCCTCGGTCC-GGCTAGGGCTTACA
127 CCACAACCCTCGGTCCAGGCCA-AGCTTACA
* * * *
18700283 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGTCGGTCA
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGG-CA
* *
18700348 GACAGGCAGAATGCGTAAGCCAGGGA
65 GAGAGGCAGAATGCGCAAG-CAGGGA
18700374 TCGGTCGGTC
Statistics
Matches: 199, Mismatches: 44, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.02
158 77 0.39
159 116 0.58
160 3 0.02
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (156 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGCAG
AGAGGCAGAATGCGCAAGCAGGGACCGGCCCAGTCCCCCCTGCATGCTATCGATCCCACTGCCAC
AACCCTCGGTCCAGGCCAAGCTTACA
Found at i:18700470 original size:26 final size:26
Alignment explanation
Indices: 18700434--18700486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18700424 CCAGTCCGAT
*
18700434 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18700460 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18700486 C
1 C
18700487 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18701175 original size:26 final size:26
Alignment explanation
Indices: 18701137--18701189 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18701127 GGCTCAAAAT
18701137 CTTAGACTGGGAATGAACTTC-GTATG
1 CTTAGACTGGGAATGAAC-TCAGTATG
18701163 CTTAGAC-GTGGAATGAACTCAGTATG
1 CTTAGACTG-GGAATGAACTCAGTATG
18701189 C
1 C
18701190 ATAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:18701799 original size:158 final size:157
Alignment explanation
Indices: 18701232--18701815 Score: 407
Period size: 158 Copynumber: 3.7 Consensus size: 157
18701222 CTTAGTCTAC
* * * * *
18701232 CAGAGAGGCAGAATG-GACAAGCCGGGGATTGG-CTCGGTCCCCCCTGTGTGTTGTCGATCCTGC
1 CAGAGAGGCAGAATGCG-CAAGCCGGGGATCGGCCT-GATCCTCCCTGCGTGCTGTCGATCCTGC
** * * * * * *
18701295 TGCTGCAACCCTCAGTTCGGTCC-GATCTTAGA-TTGGGAATGAACTCCATATG-CATAAGTCAA
64 TGCCACAACCCTCGGTCCAG-CCAG-TCTTAGAGAT-GGAATGAACTCCTTATGAC-TAAGCCAA
* * * * ** * * *
18701357 CCCACGAAATGAGCATGCACGCGTTGAGC-CGAC
125 CACACGAAACGGGCATGCAGGCACTCAGCTAG-T
* * * * * *
18701390 CAAAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCTCCTCTGCGTACTGCCGGTCCTGCT
1 CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCTCC-CTGCGTGCTGTCGATCCTGCT
* * * * * *
18701455 ACCACAACCCTTGGTCTAGCTAGGGCTTAG-GCATGGAATGAACTCCTTATGCCTAAGCCAACAC
65 GCCACAACCCTCGGTCCAGCCA-GTCTTAGAG-ATGGAATGAACTCCTTATGACTAAGCCAACAC
* * *
18701519 ACGAAACGGGCGTGTAGGCACTCAGCTGGT
128 ACGAAACGGGCATGCAGGCACTCAGCTAGT
* ** * **
18701549 CAGAGAGGCAGAATTCGCAAGCCGGGGATCAACCTGATCC-CCCCGACGTGCTGTCGATCCCACT
1 CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCTCCCTG-CGTGCTGTCGATCCTGCT
* ** * *
18701613 GCCACAACCCTCGGTCCGGCTGTGTCTTAGAGATGGAATGAACTCC-TATGACTAAGTCAACCCA
65 GCCACAACCCTCGGTCCAGC-CAGTCTTAGAGATGGAATGAACTCCTTATGACTAAGCCAACACA
** **
18701677 TTAAACGGGCATGCAGGGTGCTCAG-TCAGT
129 CGAAACGGGCATGCA-GGCACTCAGCT-AGT
* * * *
18701707 CGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCTCCATGCGTGCTGTCGATCCTGCTG
1 CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCTCCCTGCGTGCTGTCGATCCTGCTG
* * * *
18701772 TCGCAACCCTCGGTCCAGTCCAATCTTAGA-CTGGGAATGAACTC
66 CCACAACCCTCGGTCCAG-CCAGTCTTAGAGAT-GGAATGAACTC
18701816 TGTATGCTTA
Statistics
Matches: 330, Mismatches: 79, Indels: 34
0.74 0.18 0.08
Matches are distributed among these distances:
157 30 0.09
158 179 0.54
159 117 0.35
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCTCCCTGCGTGCTGTCGATCCTGCTG
CCACAACCCTCGGTCCAGCCAGTCTTAGAGATGGAATGAACTCCTTATGACTAAGCCAACACACG
AAACGGGCATGCAGGCACTCAGCTAGT
Found at i:18701832 original size:26 final size:26
Alignment explanation
Indices: 18701796--18701848 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18701786 CCAGTCCAAT
18701796 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
18701822 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18701848 C
1 C
18701849 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18702136 original size:355 final size:355
Alignment explanation
Indices: 18701614--18702255 Score: 846
Period size: 355 Copynumber: 1.8 Consensus size: 355
18701604 GATCCCACTG
* * * *
18701614 CCACAACCCTCGGTCCGGCTGTGTCTTAGAGATGGAATGAACTCCTATGACTAAGTCAACCCATT
1 CCACAACCCTCGGTCCGGCTGGGTCTTAGAAATGGAATGAACTCCTATGACTAAGCCAACCCATG
* * * * *
18701679 AAACGGGCATGCAGGGTGCTCAGTCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGA
66 AAACGAGCATGCAGGGCGCTCAATCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGACCGA
* * *
18701744 TCCTCCATGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAG-TCCAATCTTAGACTGGGA
131 TCCTCCATGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCC-GTTCCAATCTTAGACTAGGA
* * * * *
18701808 ATGAACTCTGTATGCTTAGA-TTGGGGATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAG
195 ATGAACTATGTATGCTTAGACAT-GGAATGAACTCT-GTATGCCTAAGCCAACCCACAAAACGAG
** * **
18701871 CATGCGGGTGCTCAGTCGGTCGGAGAGGCATAATGCACAAACCGGGGATCAGCCCGGTCCCCCTC
258 CATGCGGACGCTCAGCCGACCGGAGAGGCATAATGCACAAACCGGGGATCAGCCCGGTCCCCCTC
18701936 TACGTGCTGTCGATCTCGCTGCCGGTCCTGCTA
323 TACGTGCTGTCGATCTCGCTGCCGGTCCTGCTA
* **
18701969 CCACAACCCTCGGTCCGGCTAGGGT-TTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACTGA
1 CCACAACCCTCGGTCCGGCT-GGGTCTTAGAAATGGAATGAACTCC-TATGACTAAGCCAACCCA
* * * * * *
18702033 TGAAATGAGCATGTA-GGCGCTCAATCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGACC
64 TGAAACGAGCATGCAGGGCGCTCAATCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGACC
* * * **
18702097 GATCC-CACCTGCTTGCTGTTGATCCTGCTGCCACAACCCTCGGTCCGTTCTGATCTTAGACTAG
129 GATCCTC-CATGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGTTCCAATCTTAGACTAG
*
18702161 GAATGAACTATGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAG
193 GAATGAACTATGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAG
*
18702226 CGTGCGGACGCTCAGCCGACCGGAGAGGCA
258 CATGCGGACGCTCAGCCGACCGGAGAGGCA
18702256 GATACGGGTG
Statistics
Matches: 243, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
354 2 0.01
355 211 0.87
356 30 0.12
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (355 bp):
CCACAACCCTCGGTCCGGCTGGGTCTTAGAAATGGAATGAACTCCTATGACTAAGCCAACCCATG
AAACGAGCATGCAGGGCGCTCAATCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGACCGA
TCCTCCATGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGTTCCAATCTTAGACTAGGAA
TGAACTATGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCAT
GCGGACGCTCAGCCGACCGGAGAGGCATAATGCACAAACCGGGGATCAGCCCGGTCCCCCTCTAC
GTGCTGTCGATCTCGCTGCCGGTCCTGCTA
Found at i:18702189 original size:26 final size:26
Alignment explanation
Indices: 18702151--18702203 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18702141 CCGTTCTGAT
18702151 CTTAGACTAGGAATGAACTATGTATG
1 CTTAGACTAGGAATGAACTATGTATG
*
18702177 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTATGTATG
18702203 C
1 C
18702204 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTATGTATG
Found at i:18702408 original size:155 final size:155
Alignment explanation
Indices: 18702111--18702412 Score: 435
Period size: 155 Copynumber: 1.9 Consensus size: 155
18702101 CCACCTGCTT
* *
18702111 GCTGTTGATCCTGCTGCCACAACCCTCGGTCCGTTCTGATCTTAGACTAGGAATGAACTATGTAT
1 GCTGTCGATCCTGCTGCCACAACCCTCGGTCCGTTCTGATCTTAGACTAGGAATGAACTACGTAT
*
18702176 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGACGCTCAG
66 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAG
*
18702241 CCGACCGGAGAGGCAGATACGGGTG
131 CCGACCGAAGAGGCAGATACGGGTG
** * *
18702266 GCTGTCGATCCTGCTGCCGTAACCCTCGGTCCGATTC-GATCTTAGACTGGGAATGAACTCCGTA
1 GCTGTCGATCCTGCTGCCACAACCCTCGGTCCG-TTCTGATCTTAGACTAGGAATGAACTACGTA
* * * * **
18702330 TGCTTAGACATGTAATGAATTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
65 TGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCA
* **
18702395 GTCGGTCGAAGAGGCAGA
130 GCCGACCGAAGAGGCAGA
18702413 ATGCGTAAGC
Statistics
Matches: 129, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
155 126 0.98
156 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (155 bp):
GCTGTCGATCCTGCTGCCACAACCCTCGGTCCGTTCTGATCTTAGACTAGGAATGAACTACGTAT
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAG
CCGACCGAAGAGGCAGATACGGGTG
Found at i:18709980 original size:26 final size:26
Alignment explanation
Indices: 18709944--18709996 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18709934 CCCATCCAAT
18709944 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18709970 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18709996 C
1 C
18709997 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18710804 original size:524 final size:510
Alignment explanation
Indices: 18709442--18710905 Score: 1363
Period size: 524 Copynumber: 2.9 Consensus size: 510
18709432 CGTGGCTCAA
* *
18709442 AATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * * **
18709506 ACCCACAAAACGAGCGTGCGGGCA-CTCAATTGGCCAGAGAGGTAGAATGCACAAGTCGGGGATT
65 ACCCACAAAACGAGCGTGCGGG-AGCTCAGTCGACCGGAGAAGCAAAATACACAAGTCGAGGACC
* ** ** * * * * * * *
18709570 GGCCTAATCCCCCCTGCGTGCTGTCGATCCTACT-GCTACAACCCTTGGTCCGATCCGATCTTAG
129 GACCCGAT-CCCCCTAAGTGCTATCGATCCTACTATC-GCAACCCTCGATCCGGTCTGATCTTAG
* ** * ** *
18709634 ACTGGGAACGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCTTGC-GAGCGTTGAGCCGGC
192 ACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCAG-GCCCTGAGCCGAC
** * * * *
18709698 CAAAGAGGCATAATACGCAAACCGGGGATCAGCTCGATCCCCCT-T---TG----C-AT---GCT
256 CGGAGAGGCATAATACACAAACCGAGGATCGGCCCGATCCCCCTCTGCATGCTATCGATCCCGCT
** * ** * *
18709751 ATCGGTCCCACTGCCACAACCATCAGTTTGGCTAGGGCTTACACATGGAATGAACTCCCTATGCC
321 ATCGGTCCTGCTGCCACAACCCTCAGTCCGGCTAGGGCTTACACATGGAATGAACTTCGTATGCC
* *
18709816 TAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGTCGACAGGAGA--CAGAATGCACAAGCCG
386 TAAGCCAACCCA-GAAATGAGCGTGCGGGCGCTCAATCGAC-GGAGAGGCAGAATGCACAAGCCG
* * * * * *
18709879 GGGATCGGCCCGATCCCCCCTGCGTGTTGCGAATCCTGTTGCTGCAACCCTCAGTCCCATCC
449 GAGATCGGCCCGATCCCCCCTACGTGTTGCGAATCCTATTACCGCAACCCTCAGACCCATCC
* * * *
18709941 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *** * **
18710006 CCCATGAAATGAGCGTGCGGGAGCTCAGTCGACCGGAGAAGTAGAATGTGCAAGTCGGGGTTCGA
66 CCCACAAAACGAGCGTGCGGGAGCTCAGTCGACCGGAGAAGCAAAATACACAAGTCGAGGACCGA
*
18710071 CCCGATCCCCCTAAGTGCTGTCGATCCTACTATCGCAACCCTCGATCCGGTCTGATCTTAGACTG
131 CCCGATCCCCCTAAGTGCTATCGATCCTACTATCGCAACCCTCGATCCGGTCTGATCTTAGACTG
** *
18710136 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCCCTGAGCCGACCGGAG
196 GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCAGGCCCTGAGCCGACCGGAG
* * * * * *
18710201 AGGCATAATACGCAAACCGAGGATCGGCCCGATCCCCTTTTGCGTGCTGTCGATCCCGCTACCGG
261 AGGCATAATACACAAACCGAGGATCGGCCCGATCCCCCTCTGCATGCTATCGATCCCGCTATCGG
** *
18710266 TCCTGCCACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
326 TCCTGCTGCCACAACCCTCAGTCCGGCTAGGGCTTACACATGGAATGAACTTCGTATGCCTAAGC
* * * *
18710331 CAAACCATGAAATGAGCGTGCGGGTGCTCAATCGATCGGAGAGGCAGAATGCGC-AGGCGGCAGA
391 CAACCCA-GAAATGAGCGTGCGGGCGCTCAATCGA-CGGAGAGGCAGAATGCACAAGCCGG-AGA
* * * *
18710395 TTGGCCCGATCCCCCTACTTACTGTCGAACCTGTGCTG-GTCCTATTACCGCAACCCTTAGACCG
453 TCGGCCCGATCCCCC--C-TAC-GT-G----T-TGC-GAATCCTATTACCGCAACCCTCAGACCC
*
18710459 GTCC
507 ATCC
* * *
18710463 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTCAGCCA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18710527 ACCCACAAAACGAGCGTGCGGGTGCTTAGTCGACCGGAGAGGCAAAATACACAAGTCGAGGACCG
65 ACCCACAAAACGAGCGTGCGGGAGCTCAGTCGACCGGAGAAGCAAAATACACAAGTCGAGGACCG
* ** * * * * * * *
18710592 GCCCGATCTCCCCATGCGTGCTATTGATCCTGCTGTCGTAACCCTTGATCTGGTCTGATCTTAGG
130 ACCCGATC-CCCC-TAAGTGCTATCGATCCTACTATCGCAACCCTCGATCCGGTCTGATCTTAGA
* * * ** *
18710657 CTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGTGTGCAGGCGTTGAGCCGATCG
193 CTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCAGGCCCTGAGCCGACCG
* * * ** * *
18710722 GAGAGGCATAATGCACAAGCCGGGGATCGGTTCGGTCCCCCTCTGCATG-TAATCGATCCCGCTG
258 GAGAGGCATAATACACAAACCGAGGATCGGCCCGATCCCCCTCTGCATGCT-ATCGATCCCGCTA
** * *
18710786 TCGGTCCTGCTGCCACAACCCTTGGTCCAGCT-GGGTCTTATACATGGAATGAACTTCGTATGCC
322 TCGGTCCTGCTGCCACAACCCTCAGTCCGGCTAGGG-CTTACACATGGAATGAACTTCGTATGCC
* * ** *
18710850 TAAGCCAACCCAGAAAACGAGTGTGCGGGCGCTCACCCGGCCGGAGAGGCAGAATG
386 TAAGCCAACCCAG-AAATGAGCGTGCGGGCGCTCAATC-GACGGAGAGGCAGAATG
18710906 TGCAAGTCGC
Statistics
Matches: 791, Mismatches: 136, Indels: 51
0.81 0.14 0.05
Matches are distributed among these distances:
498 142 0.18
499 114 0.14
502 2 0.00
506 1 0.00
507 2 0.00
510 97 0.12
511 6 0.01
512 25 0.03
514 1 0.00
515 2 0.00
516 2 0.00
517 1 0.00
521 1 0.00
522 138 0.17
523 11 0.01
524 245 0.31
525 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (510 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCCACAAAACGAGCGTGCGGGAGCTCAGTCGACCGGAGAAGCAAAATACACAAGTCGAGGACCGA
CCCGATCCCCCTAAGTGCTATCGATCCTACTATCGCAACCCTCGATCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCAGGCCCTGAGCCGACCGGAG
AGGCATAATACACAAACCGAGGATCGGCCCGATCCCCCTCTGCATGCTATCGATCCCGCTATCGG
TCCTGCTGCCACAACCCTCAGTCCGGCTAGGGCTTACACATGGAATGAACTTCGTATGCCTAAGC
CAACCCAGAAATGAGCGTGCGGGCGCTCAATCGACGGAGAGGCAGAATGCACAAGCCGGAGATCG
GCCCGATCCCCCCTACGTGTTGCGAATCCTATTACCGCAACCCTCAGACCCATCC
Found at i:18711895 original size:159 final size:156
Alignment explanation
Indices: 18711541--18712282 Score: 515
Period size: 159 Copynumber: 4.7 Consensus size: 156
18711531 CCAATCCAAT
* * * * * * * * *
18711541 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGTGTGCGGGTGCACAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGC-TAGG
** * * * * * *
18711606 CAATCAGAGAGGCAGAATGCGCAAGCCGGGGA-CTGACCCGATCCCCC-CTGTGTGCTGTCGATC
65 CAGCCGGAGAGGCATAATGCGCAAGCC-GGGATC-GGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
** ** * * **
18711669 CTACTATCGCAACCCTCGGTTCAGCTGAT
128 CCGCTGCCACAACCCTCGGTCCAGCTGGG
* * * * *
18711698 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAGCGTGAAGGCACTAGGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAGGC
* * *
18711763 TAGCCAGAGAGGCATAATACGCAAGCCTGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCC
66 -AGCCGGAGAGGCATAATGCGCAAGCC-GGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCC
* * *
18711828 CGCTGCCATAACCCACGGTCTAGCTGGGG
129 CGCTGCCACAACCCTCGGTCCAGCT-GGG
* * * * *
18711857 CTTAGACAT-GGAATAAACTCCCTACGCCTAAGCCAACCCACGGAATGGGCGTGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCT-AG
* * * * * * * *
18711921 TCGGTCGGAGAGGCAGAATGCGCAAGCCAGAGATTGGCCCAGTCCACCC-CTGCGTGCTGTCGAT
64 GCAGCCGGAGAGGCATAATGCGCAAGCC-GGGATCGGCCCGGTCC-CCCTCTGCGTGCTGTCGGT
* * * * **
18711985 CCTGCTGCCGCAACCCTCGATCCGATCTGAT
127 CCCGCTGCCACAACCCTCGGTCC-AGCTGGG
** * * * *
18712016 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCT-AGG
* *** * * *
18712081 CAGCCGGAGAGGCATAATGCGCAAGCCGGGATCGGCCCGATCTTTCTCTGCATGCTGCCAGTCCC
65 CAGCCGGAGAGGCATAATGCGCAAGCCGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCC
* * *
18712146 ACTGCCACAACTCTTC-GTCCGGCTAGGG
130 GCTGCCACAAC-CCTCGGTCCAGCT-GGG
* * * * * * *
18712174 CTTAGACAT-GAAATGAACTCCCTATGCCCAAGCCAACCCATGAAATGGGTGTGCAGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCT-AG
* * ** * * * * *
18712238 CCGGCTAGAGAGGCAAAATGCACAAGTCGAGATCGGTCCGGTCCC
64 GCAGCCGGAGAGGCATAATGCGCAAGCCGGGATCGGCCCGGTCCC
18712283 TCCTACGTGC
Statistics
Matches: 450, Mismatches: 122, Indels: 25
0.75 0.20 0.04
Matches are distributed among these distances:
156 3 0.01
157 91 0.20
158 152 0.34
159 194 0.43
160 10 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAGGC
AGCCGGAGAGGCATAATGCGCAAGCCGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCG
CTGCCACAACCCTCGGTCCAGCTGGG
Found at i:18712251 original size:317 final size:316
Alignment explanation
Indices: 18711552--18712263 Score: 824
Period size: 317 Copynumber: 2.2 Consensus size: 316
18711542 TTAGACTGGG
* * *** * * **
18711552 AATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGTGTGCGGGTGCACAGCCAATCAGAGAG
1 AATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCAGGTGCTCAGCCGGTCAGAGAG
* * * *
18711617 GCAGAATGCGCAAGCCGGGGACTGACCCGATCCCCCCTGTGTGCTGTCGATCCTACTATCGCAAC
66 GCAGAATGCGCAAGCCAGAGACTGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAAC
* * **
18711682 CCTCGGTTCAGCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAG
131 CCTCGATCCAGCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAG
* *
18711747 CGTGAAGGCACTAGGCTAGCCAGAGAGGCATAATACGCAAGCCTGGGATCGGCCCGGTCCCCCTC
196 CGTGAAGGCACTAGGCCAGCCAGAGAGGCATAATACGCAAGCCTGGGATCGGCCCGATCCCCCTC
* * * * * * * *
18711812 TACGTGCTGTCGGTCCCGCTGCCATAACCCACGGTCTAGCTGGGGCTTAGACATGG
261 TACATGCTGCCAGTCCCACTGCCACAACCCACGGTCCAGCTAGGGCTTAGACATGA
* * * * * * * *
18711868 AATAAACTCCCTACGCCTAAGCCAACCCACGGAATGGGCGTGCAGGCGCTCAGTCGGTCGGAGAG
1 AATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCAGGTGCTCAGCCGGTCAGAGAG
* * * *
18711933 GCAGAATGCGCAAGCCAGAGATTGGCCC-AGTCCACCCCTGCGTGCTGTCGATCCTGCTGCCGCA
66 GCAGAATGCGCAAGCCAGAGACTGACCCGA-TCC-CCCCTGCGTGCTGTCGATCCTACTACCGCA
*
18711997 ACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACAAAA
129 ACCCTCGATCC-AGCTGATCTTAGACTGGGAATGAACTCCT-TATGCCTAAGTCAACCCACAAAA
** * * * *
18712061 CGAGCGTGCGGGCGCT-GAGCCAGCCGGAGAGGCATAATGCGCAAGCC-GGGATCGGCCCGATCT
192 CGAGCGTGAAGGCACTAG-GCCAGCCAGAGAGGCATAATACGCAAGCCTGGGATCGGCCCGATCC
** * ** *
18712124 TTCTCTGCATGCTGCCAGTCCCACTGCCACAACTCTTC-GTCCGGCTAGGGCTTAGACATGA
256 CCCTCTACATGCTGCCAGTCCCACTGCCACAAC-CCACGGTCCAGCTAGGGCTTAGACATGA
*
18712185 AATGAACTCCCTATGCCCAAGCCAACCCATGAAATGGGTGTGCAGGTGCTCAGCCGG-CTAGAGA
1 AATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCAGGTGCTCAGCCGGTC-AGAGA
* *
18712249 GGCAAAATGCACAAG
65 GGCAGAATGCGCAAG
18712264 TCGAGATCGG
Statistics
Matches: 326, Mismatches: 63, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
315 1 0.00
316 76 0.23
317 162 0.50
318 87 0.27
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (316 bp):
AATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCAGGTGCTCAGCCGGTCAGAGAG
GCAGAATGCGCAAGCCAGAGACTGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAAC
CCTCGATCCAGCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAG
CGTGAAGGCACTAGGCCAGCCAGAGAGGCATAATACGCAAGCCTGGGATCGGCCCGATCCCCCTC
TACATGCTGCCAGTCCCACTGCCACAACCCACGGTCCAGCTAGGGCTTAGACATGA
Found at i:18712702 original size:159 final size:158
Alignment explanation
Indices: 18712368--18712835 Score: 341
Period size: 159 Copynumber: 3.0 Consensus size: 158
18712358 AACTCCGTAT
* * * * * ** * * *
18712368 GCTTAGGCATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGC-GGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * ** * * * * * * **
18712432 CCGATCGGAAAGGCAGAATAAGCAAGTCGGGGATCGATCCGA-TCCCCCCTACATACTATCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATC-AGCCCAGTCCCCCCTGCATGCTGCCGATC
* ** * * * *
18712496 CTGCTGTTACAATCCTCGGTCTAGTCT-GA
130 CCGCTGCCACAACCCTCGGTC-CGACTGGG
* * ** * * * * * * *
18712525 TCTTAGA-TTGGGAATGAACTCGGTATGCCTAAGTCAACCCATGAAATGAGCATGTGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
** * ** ** *
18712589 GCCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATTGGCCCAGTCCCCCTCTGCATGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCC-CTGCATGCTGCCGAT
18712654 CCCGCTGCCACAACCCTCGGTCCGACTGGG
129 CCCGCTGCCACAACCCTCGGTCCGACTGGG
* * *
18712684 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACGCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * *
18712749 CTGACCGGAGAGGTAGAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCCTGCATGCTGCCGATCC
* * *
18712814 TGCTGTCGCAACCCTCGGTCCG
131 CGCTGCCACAACCCTCGGTCCG
18712836 GTCCGATCTC
Statistics
Matches: 241, Mismatches: 64, Indels: 11
0.76 0.20 0.03
Matches are distributed among these distances:
156 1 0.00
157 47 0.20
158 75 0.31
159 117 0.49
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCCTGCATGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:18712875 original size:26 final size:25
Alignment explanation
Indices: 18712846--18712894 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
18712836 GTCCGATCTC
18712846 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCC-TATGCTT
*
18712872 AGACTGGGGATGAACTCCTATGC
1 AGACTGGGAATGAACTCCTATGC
18712895 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (25 bp):
AGACTGGGAATGAACTCCTATGCTT
Found at i:18713576 original size:26 final size:26
Alignment explanation
Indices: 18713538--18713616 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
18713528 GGGTCAAACT
*
18713538 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCAGTATG
*
18713564 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCAGTATG
18713590 CTTAGACATGGAATGAACTCAGTATG
1 CTTAGACATGGAATGAACTCAGTATG
18713616 C
1 C
18713617 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCAGTATG
Found at i:18713943 original size:26 final size:26
Alignment explanation
Indices: 18713907--18713958 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18713897 CTGGTTCAAT
*
18713907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
18713933 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18713959 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18714818 original size:26 final size:26
Alignment explanation
Indices: 18714789--18714841 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18714779 CTGGTCCGAT
18714789 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18714815 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18714841 C
1 C
18714842 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18715194 original size:26 final size:26
Alignment explanation
Indices: 18715156--18715208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18715146 TCGGTCTGAT
*
18715156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18715182 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
18715208 C
1 C
18715209 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18715589 original size:865 final size:872
Alignment explanation
Indices: 18713601--18715629 Score: 1997
Period size: 882 Copynumber: 2.3 Consensus size: 872
18713591 TTAGACATGG
* * * * * * * * *
18713601 AATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCAG-CTGGAGA
1 AATGAACTCCGTATGCCTAAGTCAACCGACGAAACAAGCGTGCGGGCGATCA-ACAGACCGGAGA
* * * *** * * * * * *
18713665 GGCAGAATGCGTAAGCCGGGGATCTGCTTGGTCCCACTCTGCGTGCTTACCCG-TCCCGCTGTCG
65 GGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTATGCATGC-TA-CCGATCCCACTGCCA
* ** ** *
18713729 CAACCCTCGATTTGGGTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC-CGTAA
128 CAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCACG--A
* ****
18713793 AACGGGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAGATAGGGATCGGCCCGATC
191 AACGGGCGTGCGGGCGCTCAACC-GCCAGAGAGGCAGAATGCGTAACCCGGGGATCGGCCCGATC
* ** *
18713858 CCT-CTATGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCTGGTTCAATCTTAGACTGGGAATG
255 CCTCCTATGTGCTGTCGATCCTGCTACCACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATG
* *
18713922 AACTCCGTATGCTTAGACTGGGGATAAACTCTGTATGGCTAAGTCAACCCACGAAATGAGCGTGC
320 AACTCCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT-C
* * * ** ** *
18713987 AGGTGCTCAGTCGGCTGGAGAGGTTGGCCAGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGA
384 A---G--CAGGCGGCTGGAGA-GCTGGCAAGAGAGGCAAAACACACAAGCCGGAGATCGACCCGA
** * * * * ** * * * ** *
18714052 TCCCCCCTACGTGCTGTCGATCCTGCTGCTAGTCCTGCTTCGTATCCCTTGGTCTGGTTCGATCT
443 TCCCCCCTACGTGCTACCGATCCCGCTGCCAGTCCTACTCCACAACCCTCGGTCCGACTCGAGCT
* * * * *
18714117 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCGTGGAACGAGCATACAGGCGCTCAGCCG
508 TAAACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCGCTCAACCG
* * * * *
18714182 ACCGGAGAGACAGAATGCGAAAGCTGAGGATCAGCTCGATCCCTCCTTGTGTGCTGCCGATCCTG
573 ACCAGAGAGACAGAATGCGAAAGCCGAGGATCAGCCCGATCCCTCCTTGTGTGCTGCCAATCCTA
* * * *
18714247 CTGCTGGTCCTGCTGTCGCAAGCCTTTGTCCAATCCGATCTTAGAGTGGGAATGAACTCTGTATG
638 CTGCTGGTCCTGCTGTCGCAAGCCCTCGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18714312 CTTAGACATGGAATTAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGCGCGGGTGCTCAAC
703 CTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGCACGGGCGCTCAAC
* ** *
18714377 CGGCTGGAGAGGTAGAATGCGCAAGTCGAGGACCGGGCCGATCCGCCCGTTGATTGATGTCGATC
768 CGGCTGAAGAGCCAGAATGCGCAAGTCGAGGACCGGGCCGATCCGCCCGTCGA-TGATGTCGATC
* * *
18714442 CTGCTATTGCAACCCTCGGTCTGATCTGATCTTAGACTGGG
832 CTGCTATTGCAACCCTCAGTCTGATCTGATCTTAAACTGGA
* * *
18714483 AATGAACTCCGTATGCCTAAGTTAACCGACGAAACGAGCGTGCGGGCGATCAACCGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGTCAACCGACGAAACAAGCGTGCGGGCGATCAACAGACCGGAGAG
* * * * * * * ** **
18714548 GTAGAATGCGCAAGTCAGGGATTGGCTCAGTCCCCCTCTGCGTGCTACCGGTCCTGCTGCCATGA
66 GCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTATGCATGCTACCGATCCCACTGCCACAA
* *
18714613 CCCTTGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
131 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCACGAAACG
* * ** *
18714678 GGCGAGCGGGCACTCAACCGGCC-GAAGAGGCAGAATGCACAACCCGGGGATCGGCCCGGTCCCT
195 GGCGTGCGGGCGCTCAACC-GCCAG-AGAGGCAGAATGCGTAACCCGGGGATCGGCCCGATCCCT
* * * *
18714742 CCTGCT-TGCTGTCGATCCTGCTACCACAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAA
258 CCT-ATGTGCTGTCGATCCTGCTACCACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAA
* *
18714806 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGT-A-C
322 CTCCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTCAGC
* * * * * *
18714869 AGGC-GCT-TA-A-CTGGCAAGAGAGGCATAACACACAAGCTGGAGATC-AGCCTGGTCCCTCTC
387 AGGCGGCTGGAGAGCTGGCAAGAGAGGCAAAACACACAAGCCGGAGATCGA-CCCGATCCC-CCC
* * *
18714929 TGCGTGCTACCGATCCCGCTGCCAGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAAACA
450 TACGTGCTACCGATCCCGCTGCCAGTCCTACT-CCACAACCCTCGGTCCGACTCGAGCTTAAACA
* * * * * *
18714994 GGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTACGGGTGCTCAACCGATCAGA
514 GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCGCTCAACCGACCAGA
** * * * *
18715059 GAGGTAGAATGCGCAAGCCGGGGATC-GACCCGATCCCTCC-TGTGTGCTGCCAATCTTACAT-T
579 GAGACAGAATGCGAAAGCCGAGGATCAG-CCCGATCCCTCCTTGTGTGCTGCCAATCCTAC-TGC
* ** *
18715121 TGGTCCTGCTGTCGCAA-CCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
642 TGGTCCTGCTGTCGCAAGCCCTCG-TCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* ** ** **
18715185 AGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTACGGGCGCTCAGTCGG
706 AGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGCACGGGCGCTCAACCGG
* * * * * *
18715250 CTGAAGAGCCAGAATGCGTAAGTCGGGGATC-GGCTTGGTCC-CCC-TCCG-TGCTGTCGATCCT
771 CTGAAGAGCCAGAATGCGCAAGTCGAGGACCGGGC-CGATCCGCCCGT-CGATGATGTCGATCCT
* *
18715311 GCTA-TGCAACCCTCAGTCTGATTTGATCTTAAATTGGA
834 GCTATTGCAACCCTCAGTCTGATCTGATCTTAAACTGGA
* * * * *
18715349 AATGAGCT-CGTATGCCTAAGTCAA-TGCACGAAATAAGCGTGCGGGC-ACTGAGCTAG-CCGGA
1 AATGAACTCCGTATGCCTAAGTCAACCG-ACGAAACAAGCGTGCGGGCGA-TCAAC-AGACCGGA
* * * ** *
18715410 GAGGCATAATGCGTAAGCCAGGGATCGGCCC-GATCCCTCTATGCATGCTGTCGATCCCATTGCC
63 GAGGCAGAATGCGCAAGCCAGGGATCGGCCCAG-TCCCCCTATGCATGCTACCGATCCCACTGCC
* * *
18715474 ACAACCCTCGGTCCGACTGGGGCCTAGACAAGGAATGAACTCCCTATGCCTAAGCTAACCAACGA
127 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC-ACGA
** * * * * *
18715539 AACGGATGTGCGGGTGCTCAACCGATCTGAGAGGCAGAATGTGTAACCCGGGGATCAGCCCGATC
191 AACGGGCGTGCGGGCGCTCAACCG-CCAGAGAGGCAGAATGCGTAACCCGGGGATCGGCCCGATC
* * *
18715604 CCTCTTTACGTGCTGTCAATCCTGCT
255 CCTC-CTATGTGCTGTCGATCCTGCT
18715630 GTCGGTCCAG
Statistics
Matches: 940, Mismatches: 183, Indels: 64
0.79 0.15 0.05
Matches are distributed among these distances:
864 6 0.01
865 196 0.21
866 54 0.06
867 16 0.02
868 2 0.00
869 44 0.05
870 180 0.19
871 108 0.11
872 1 0.00
873 3 0.00
874 4 0.00
880 5 0.01
881 118 0.13
882 200 0.21
883 3 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (872 bp):
AATGAACTCCGTATGCCTAAGTCAACCGACGAAACAAGCGTGCGGGCGATCAACAGACCGGAGAG
GCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTATGCATGCTACCGATCCCACTGCCACAA
CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCACGAAACGG
GCGTGCGGGCGCTCAACCGCCAGAGAGGCAGAATGCGTAACCCGGGGATCGGCCCGATCCCTCCT
ATGTGCTGTCGATCCTGCTACCACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTCAGCAGGC
GGCTGGAGAGCTGGCAAGAGAGGCAAAACACACAAGCCGGAGATCGACCCGATCCCCCCTACGTG
CTACCGATCCCGCTGCCAGTCCTACTCCACAACCCTCGGTCCGACTCGAGCTTAAACAGGGAATG
AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCGCTCAACCGACCAGAGAGACAG
AATGCGAAAGCCGAGGATCAGCCCGATCCCTCCTTGTGTGCTGCCAATCCTACTGCTGGTCCTGC
TGTCGCAAGCCCTCGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAA
TAAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGCACGGGCGCTCAACCGGCTGAAGAGCC
AGAATGCGCAAGTCGAGGACCGGGCCGATCCGCCCGTCGATGATGTCGATCCTGCTATTGCAACC
CTCAGTCTGATCTGATCTTAAACTGGA
Found at i:18715866 original size:26 final size:26
Alignment explanation
Indices: 18715837--18715889 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18715827 CTGGTCCGAT
18715837 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18715863 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18715889 C
1 C
18715890 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18716669 original size:26 final size:26
Alignment explanation
Indices: 18716631--18716683 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18716621 GGCTTAAACT
*
18716631 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18716657 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18716683 C
1 C
18716684 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18716998 original size:157 final size:159
Alignment explanation
Indices: 18716656--18717001 Score: 373
Period size: 157 Copynumber: 2.2 Consensus size: 159
18716646 AACTCCGTAT
*
18716656 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATAAGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCTTAAGCCAACCCATGAAATAAGCATGCAGGCGCTCAG
* * *
18716721 TCGGCTAGAGATACAGAATGCACAAGCCAGGGATCGACCCAGTCGCCCTCTGCGTGCTACCTGAC
66 TCGGCTAGAGAGACAGAATGCACAAGCCAGGGATCGACCCAGTCGCCCCCTACGTGCTACCTGAC
* * ***
18716786 CCACTGCCACAACCCTTGTTTCAGCTGGG
131 CCACTGCCACAACCCTCGTCTCAGCTCAA
* ** ** *
18716815 GCTTAGACATGGAAT-AACTCCCTATGCTTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCTTAAGCCAACCCATGAAATAAGCATGCAGGCGCTCAG
* * * *
18716879 -CGG-TCAGAGAGGCAGAATGCGCAAAGCCAGGGATCGACTCGGTC-CCCCCTACGTGCTACC-G
66 TCGGCT-AGAGAGACAGAATGCAC-AAGCCAGGGATCGACCCAGTCGCCCCCTACGTGCTACCTG
*** * * *
18716940 ATCTTGCTGCCGCAACCCTCGATCT-GGTTCAA
129 A-CCCACTGCCACAACCCTCG-TCTCAGCTCAA
*
18716972 TCTTAGAC-TGGAATGAACTCCATATGCTTA
1 GCTTAGACATGGAATGAACTCCATATGCTTA
18717002 GATTGGGATG
Statistics
Matches: 155, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
156 9 0.06
157 68 0.44
158 63 0.41
159 15 0.10
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCTTAAGCCAACCCATGAAATAAGCATGCAGGCGCTCAG
TCGGCTAGAGAGACAGAATGCACAAGCCAGGGATCGACCCAGTCGCCCCCTACGTGCTACCTGAC
CCACTGCCACAACCCTCGTCTCAGCTCAA
Found at i:18717012 original size:25 final size:25
Alignment explanation
Indices: 18716973--18717023 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
18716963 CTGGTTCAAT
18716973 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
* * *
18716998 CTTAGATTGGGATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCATATG
18717023 C
1 C
18717024 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:18718076 original size:26 final size:26
Alignment explanation
Indices: 18718047--18718099 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18718037 CTGGTCCGAT
18718047 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18718073 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18718099 C
1 C
18718100 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18718406 original size:867 final size:867
Alignment explanation
Indices: 18717073--18718638 Score: 1976
Period size: 867 Copynumber: 1.8 Consensus size: 867
18717063 GGTCGGAAAG
* * * * *
18717073 GTCGGTCGAAGAGATAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTTACGTGTTGCCGATC
1 GTCGGCCGAAGAGATAGAATACACAAGCCGGGGATCGACCCGATCCCCCTTACATGCTACCGATC
* * * * * *
18717138 CTACTATTGGTCCTACTATCGCAACCCTCGGTCTAATCTGATGTTAGATTAGGAATGAACTCCGT
66 CTACTACTGGTCCTACTACCGCAACCCTCGATCTAATCCGATCTTAGACTAGGAATGAACTCCGT
* * **
18717203 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAGCGTGCGGGTGCTC
131 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGACGCTC
* * * * * * * * *
18717268 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCTCCTGCGTTCTATCGAT
196 AACCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTATCGAT
* * * *
18717333 CCTACTATTGCAACCTTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGGTC
261 CCTACTATCGCAACCCTCGGTCC-GTTCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTC
* * * * *
18717398 AACCCATGAAATGAGCATTCGGGTGCTGAGTCAACTAGAGAGGCATAATGCACAAGCTAAAGATC
325 AACCCACGAAATGAGCATGCGGGCGCTGAGCCAACTAGAGAGGCATAATGCACAAGCCAAAGATC
* * * ** *
18717463 GGACCAAGTACCCCTCTGCTTGCTACCAATCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTA
390 GGACCAAGTACCCCTCTACATGCTACCAATCCCACTACCACAACCCTCAATCTGACTGGGGCTTA
* *
18717528 GACATGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTACGGGCGCTCAGCCAGCC
455 GACATGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCAGCC
* * * **
18717593 AGAGAGGCAGAATGCGCAAGCCGAAGATCGGCCTGATCCCCCATGTGTGCTATCGA-ACTATTGT
520 AGAGAGGCAGAATGCGCAAGCCGAAGATCGACCCGATCCCCCATGTGTGCTATCGATACTACTAC
* *
18717657 CGTAACCCTTAGTCTGGTCCGATCTTAGATTGGGAATAAACTCCATATGCTTAGG-CTAGGGATG
585 CGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATAAACTCCATATGCTT-GGACTAGGGATG
* * * *
18717721 AACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGTCCAGGCGCTCAGCTGGTCGGAGAGCCAT
649 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATCCAGACGCTCAGCTGGTCGGAGAGCCAT
18717786 AATGCGTAAGCCAGGGATTAGCTCGATCCCCCTCTGCGTGTTACCGATCCTACTATCGGTCTTGC
714 AATGCGTAAGCCAGGGATTAGCTCGATCCCCCTCTGCGTGTTACCGATCCTACTATCGGTCTTGC
18717851 TATCGCAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCACCCC
779 TATCGCAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCACCCC
18717916 ACGAAACGAGCGTACGGGCGCTCA
844 ACGAAACGAGCGTACGGGCGCTCA
* * * * * *
18717940 GTCGGCCGGAGAGGTAGAATACGCAAGCTGGGGATCGACCCGATCGCCCC-TGCATGCTATCGAT
1 GTCGGCCGAAGAGATAGAATACACAAGCCGGGGATCGACCCGATC-CCCCTTACATGCTACCGAT
* * * * ** *
18718004 CCTGCTGCTGGTCCTGCTACCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCG
65 CCTACTACTGGTCCTACTACCGCAACCCTCGATCTAATCCGATCTTAGACTAGGAATGAACTCCG
* *
18718069 TATGCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGACGCT
130 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGACGCT
* * *
18718134 CAACCAACCGAAGAGGCAGAATGTGCTAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGA
195 CAACCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTATCGA
* *
18718199 TCTTGCTATCGCAACCCTCGGTCC-TATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAG
260 TCCTACTATCGCAACCCTCGGTCCGT-TC-GATCTTAGACTGGGAATAAACTCCGTATGCCTAAG
* ** * ** ***
18718263 TCAACCCACGAAATGAGCCTGCGGGCGCTGAGCC-GGTCGGAGAGGCATAATGCGTAAGCCGGGG
323 TCAACCCACGAAATGAGCATGCGGGCGCTGAGCCAACT-AGAGAGGCATAATGCACAAGCCAAAG
* ** * ** *
18718327 ATC-GACCCAA-TCCCCCTCTACATGCTGTCGATCCTGCTACCACAATCCTCAATCTGACTGGGG
387 ATCGGA-CCAAGTACCCCTCTACATGCTACCAATCCCACTACCACAACCCTCAATCTGACTGGGG
* *
18718390 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
451 CTTAGACAT-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGC
* * * * * ** * ** * * * * *
18718455 TAGTCGGAGAGGTAGAATGTGTGAGCTGGGGATCGACCCGGTCCCCCCTGTGTGCTGTTGATCCT
515 CAGCCAGAGAGGCAGAATGCGCAAGCCGAAGATCGACCCGATCCCCCATGTGTGCTATCGATACT
* * * * * ** *
18718520 GCTACCGTAACTCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTGGG
580 ACTACCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATAAACTCCATATGCTTGGACTAGG
* *
18718585 GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGACGCTCAGC
645 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATCCAGACGCTCAGC
18718639 CGACCAGAGA
Statistics
Matches: 576, Mismatches: 115, Indels: 15
0.82 0.16 0.02
Matches are distributed among these distances:
865 1 0.00
866 54 0.09
867 418 0.73
868 103 0.18
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (867 bp):
GTCGGCCGAAGAGATAGAATACACAAGCCGGGGATCGACCCGATCCCCCTTACATGCTACCGATC
CTACTACTGGTCCTACTACCGCAACCCTCGATCTAATCCGATCTTAGACTAGGAATGAACTCCGT
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGACGCTC
AACCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTATCGAT
CCTACTATCGCAACCCTCGGTCCGTTCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCA
ACCCACGAAATGAGCATGCGGGCGCTGAGCCAACTAGAGAGGCATAATGCACAAGCCAAAGATCG
GACCAAGTACCCCTCTACATGCTACCAATCCCACTACCACAACCCTCAATCTGACTGGGGCTTAG
ACATGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCAGCCA
GAGAGGCAGAATGCGCAAGCCGAAGATCGACCCGATCCCCCATGTGTGCTATCGATACTACTACC
GTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATAAACTCCATATGCTTGGACTAGGGATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCATCCAGACGCTCAGCTGGTCGGAGAGCCATAA
TGCGTAAGCCAGGGATTAGCTCGATCCCCCTCTGCGTGTTACCGATCCTACTATCGGTCTTGCTA
TCGCAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCACCCCAC
GAAACGAGCGTACGGGCGCTCA
Found at i:18718420 original size:159 final size:157
Alignment explanation
Indices: 18718072--18718525 Score: 491
Period size: 159 Copynumber: 2.9 Consensus size: 157
18718062 AACTCCGTAT
* * * * * *
18718072 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGACGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
** * * *
18718137 CCAACCGAAGAGGCAGAATGTGCTAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCT
66 CCAGTCGGAGAGGCAGAATGTG-TAGCCGGGGATCGACCCGATCCCCCCTACATGCTGTCGATCC
* * **
18718202 TGCTATCGCAACCCTCGGTCCTATCTGA
130 TGCTACCACAACCCTCAATCCTATCTGA
* * * * *
18718230 TCTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCCTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCA
* * * *
18718294 GCCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCAATCCCCCTCTACATGCTGTCGAT
65 GCCAGTCGGAGAGGCAGAATGTGT-AGCCGGGGATCGACCCGATCCCCC-CTACATGCTGTCGAT
* *
18718359 CCTGCTACCACAATCCTCAAT-CTGA-CTGGG
128 CCTGCTACCACAACCCTCAATCCT-ATCT-GA
* * *
18718389 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * * * *** *
18718454 CTAGTCGGAGAGGTAGAATGTGTGAGCTGGGGATCGACCCGGTCCCCCCTGTGTGCTGTTGATCC
66 CCAGTCGGAGAGGCAGAATGTGT-AGCCGGGGATCGACCCGATCCCCCCTACATGCTGTCGATCC
18718519 TGCTACC
130 TGCTACC
18718526 GTAACTCTCG
Statistics
Matches: 244, Mismatches: 46, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 114 0.47
159 127 0.52
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
CCAGTCGGAGAGGCAGAATGTGTAGCCGGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCT
GCTACCACAACCCTCAATCCTATCTGA
Found at i:18719648 original size:26 final size:26
Alignment explanation
Indices: 18719612--18719664 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18719602 CTGGTTTGAT
18719612 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* *
18719638 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
18719664 C
1 C
18719665 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:18719838 original size:26 final size:26
Alignment explanation
Indices: 18719809--18719861 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18719799 CCGATCTGAT
18719809 CTTAGAC-TGCGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
18719835 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18719861 C
1 C
18719862 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18720180 original size:159 final size:157
Alignment explanation
Indices: 18719834--18720182 Score: 377
Period size: 157 Copynumber: 2.2 Consensus size: 157
18719824 AACTCCGTAT
*
18719834 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *** *
18719899 TCGGTCGGAGAGCAGAATGTGCAAGCTGGGGATCGACTTGGTCCCCCCTGCGTGCTATCGATCCT
66 TCGGACGAAGAGCAGAATGCGCAAGCCAAGGATCGACTCGGTCCCCCCTGCGTGCTATCGATCCT
*
18719964 ACTACCGCAACCCTCGGTCCGGTCTGA
131 ACTACCACAACCCTCGGTCCGGTCTGA
* * * * * * * *
18719991 TCTTAGAC-TGGGAATTAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGGGCGCTCA
*
18720055 G-CTGACTGAAGATGC-GTAATGCGCAAGCCAAGGATCGACTCGGTCCCCCTCTGCGTGCTATCG
65 GTCGGAC-GAAGA-GCAG-AATGCGCAAGCCAAGGATCGACTCGGTCCCCC-CTGCGTGCTATCG
* * * *
18720118 GT-CTCACTGCCACAACCCTCAGTTCC-GT-TGGG
126 ATCCT-ACTACCACAACCCTC-GGTCCGGTCT-GA
*
18720150 GCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG
18720183 CCATCCCATG
Statistics
Matches: 157, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
156 4 0.03
157 59 0.38
158 32 0.20
159 57 0.36
160 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGGGCGCTCAG
TCGGACGAAGAGCAGAATGCGCAAGCCAAGGATCGACTCGGTCCCCCCTGCGTGCTATCGATCCT
ACTACCACAACCCTCGGTCCGGTCTGA
Found at i:18720324 original size:26 final size:26
Alignment explanation
Indices: 18720273--18720325 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18720263 CCGGTCCGAT
* *
18720273 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18720299 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18720325 C
1 C
18720326 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18722147 original size:158 final size:157
Alignment explanation
Indices: 18721893--18722387 Score: 548
Period size: 159 Copynumber: 3.1 Consensus size: 157
18721883 ACTCCGTATG
* * * *
18721893 CTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* *
18721958 CGGTCGGAGAGGCAGAATGCGTAAGCCGGGGA-CTGACCCGGTCCCCCTTACGTGCTGTCGATCC
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGGTCCCCCTTACGTGCTGTCGATCC
18722022 TACTGCCACAACCCTCGGTCCGGTCTGAT
129 TACTGCCACAACCCTCGGTCCGGTCTGAT
* * * *
18722051 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCCTGCAGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * *
18722116 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTACGTGCTGTCG-GCC
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT-TACGTGCTGTCGATCC
* * **
18722180 CAGCTGCCACAACCCTCGGTCTGG-CTGGGG
129 TA-CTGCCACAACCCTCGGTCCGGTCT-GAT
* * ** * * *
18722210 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCATTAAACGGGCGTACGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
** * * * *
18722275 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATGGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCT
* ** * *
18722340 ACTGTCGTAA-CCTCGGTCCAGTCCGAT
130 ACTGCCACAACCCTCGGTCCGGTCTGAT
*
18722367 CTTAGACTAGGAATCAACTCC
1 CTTAGACT-GGAATGAACTCC
18722388 ATATGCTTAG
Statistics
Matches: 278, Mismatches: 50, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
156 1 0.00
157 29 0.10
158 118 0.42
159 129 0.46
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:18722417 original size:25 final size:26
Alignment explanation
Indices: 18722367--18722418 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
18722357 CCAGTCCGAT
18722367 CTTAGACTAGGAATCAACTCCATATG
1 CTTAGACTAGGAATCAACTCCATATG
* * *
18722393 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCATATG
18722418 C
1 C
18722419 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:18723136 original size:26 final size:25
Alignment explanation
Indices: 18723086--18723137 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
18723076 GGCTCAAACT
*
18723086 CTTAGACTGGAATGAACTCCTTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
18723111 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
18723137 C
1 C
18723138 CTAACCAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:18723430 original size:158 final size:157
Alignment explanation
Indices: 18723111--18723452 Score: 359
Period size: 158 Copynumber: 2.2 Consensus size: 157
18723101 ACTCCTTATG
* * *
18723111 CTTAGACATGGAATGAACTTCGTATGCCTAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGCG
1 CTTAGACATGGAATGAACTCCGTATGCCTAACCAACCCACGAAACGAGCGTGCGGGCGCTCACCA
* * * * * ** * * * *
18723176 GCTGGAGAGGCAGAATGCGTAAGCCAAGGATTGGCCCAGTCCCAATCTGTGTGCTGCTGGTCCTG
66 ACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCAGTCCCAACCTACGTGCTACCGATCCTA
*
18723241 CTGCCACAACCCTCGATCTGACTGGGA
131 CTGCCACAACCCTCGATCTGACTGCGA
* * * *
18723268 CTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAA-CCAACCCACGAAACGAGCGTGCGGGCGCTC-AC
* * ** *
18723333 CAACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCC-GATCCC-CCCTACGTGCTACCGATC
64 CAACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCAG-TCCCAACCTACGTGCTACCGATC
* * * *
18723396 CTACTGCCACAACCTTCGGTCTG-GTTCGA
128 CTACTGCCACAACCCTCGATCTGACTGCGA
18723425 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 -CTTAGACAT-GGAATGAACTCCGTATGC
18723453 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
157 32 0.21
158 83 0.55
159 35 0.23
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAACCAACCCACGAAACGAGCGTGCGGGCGCTCACCA
ACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCAGTCCCAACCTACGTGCTACCGATCCTA
CTGCCACAACCCTCGATCTGACTGCGA
Found at i:18723462 original size:26 final size:26
Alignment explanation
Indices: 18723426--18723478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18723416 CTGGTTCGAT
*
18723426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
18723452 CTTAGACTGGGGATGTACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18723478 C
1 C
18723479 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:18723672 original size:26 final size:26
Alignment explanation
Indices: 18723634--18723686 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18723624 CTGGTCTGAT
18723634 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18723660 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18723686 C
1 C
18723687 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18723766 original size:208 final size:209
Alignment explanation
Indices: 18723406--18723795 Score: 538
Period size: 208 Copynumber: 1.9 Consensus size: 209
18723396 CTACTGCCAC
* * *
18723406 AACCTTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGTACA
1 AACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGTACA
* * * * * * *
18723471 CCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGTGCTCAGTCGATCGGAGAGGTAGAATG
66 CCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGATCAGAGAGGCAAAATG
* *
18723536 CGCAAGTCAGGGATCAACCCGGT-CCCCCCTGCATGCTGTCGATCCTGCTGCTAGTCCTACTGTC
131 CACAAGTCAGGGATCAACCCGGTCCCCCCCAGCATGCTGTCGATCCTGCTGCTAGTCCTACTGTC
18723600 GGTCCTACTGTCGT
196 GGTCCTACTGTCGT
18723614 AACCCTCGATCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAAT-TA
1 AACCCTCGATCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGT-
* * *
18723676 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTCAGAGAGGCAAA
63 ACACCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGATCAGAGAGGCAAA
* * * *
18723741 ATGCACAAG-CTGGGGATCGACCCGGTCCCCCCCAGCGTGCTGTCGATCTTGCTGC
128 ATGCACAAGTC-AGGGATCAACCCGGTCCCCCCCAGCATGCTGTCGATCCTGCTGC
18723796 CGCAACCCTC
Statistics
Matches: 158, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
207 4 0.03
208 128 0.81
209 26 0.16
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (209 bp):
AACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGTACA
CCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGATCAGAGAGGCAAAATG
CACAAGTCAGGGATCAACCCGGTCCCCCCCAGCATGCTGTCGATCCTGCTGCTAGTCCTACTGTC
GGTCCTACTGTCGT
Found at i:18724557 original size:158 final size:159
Alignment explanation
Indices: 18724186--18724558 Score: 436
Period size: 159 Copynumber: 2.3 Consensus size: 159
18724176 AACTCCATAT
* * *
18724186 GCTTAGATATGGAATGAACTCTGTATGCCTAAGCCAACCCATTGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAACGAGCGTGCGGGCGCTCA
* * *
18724251 ACTGACCGGAGAGGCAGAATGCGCAAGCCGGGATACGGCCCGATCCCCCCATGCGTACTGTCGAT
65 ACTGACCGGAGAGGCAAAATGCGCAAGCCGGGATACGACCCGATCCCCCCATGCGTACTATCGAT
*
18724316 CCTGCTATCACAACCCTCGATCCGGTCCAA
130 CCTGCTATCACAACCCTCGATCCAGTCCAA
* * * * * *
18724346 TCTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
18724410 GCTGACCGGAGAGGTAAAATGCGCAAGCCGGGGAT-CGACCCGATCCTCCTC-TGCGTGCTATC-
65 ACTGACCGGAGAGGCAAAATGCGCAAGCC-GGGATACGACCCGATCC-CCCCATGCGTACTATCG
* * *
18724472 AGTCC-GCTA-CACAAACCCTCGGTCCAG-CTAGG
128 A-TCCTGCTATCAC-AACCCTCGATCCAGTCCA-A
* *
18724504 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC
18724559 ACAAGTCGAG
Statistics
Matches: 180, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
157 5 0.03
158 64 0.36
159 70 0.39
160 41 0.23
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CTGACCGGAGAGGCAAAATGCGCAAGCCGGGATACGACCCGATCCCCCCATGCGTACTATCGATC
CTGCTATCACAACCCTCGATCCAGTCCAA
Found at i:18724661 original size:26 final size:26
Alignment explanation
Indices: 18724632--18724684 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18724622 CCAGTCCGAT
18724632 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
18724658 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
18724684 C
1 C
18724685 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Done.