Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 169 of 402
Found at i:18725171 original size:169 final size:170
Alignment explanation
Indices: 18724793--18725182 Score: 400
Period size: 169 Copynumber: 2.3 Consensus size: 170
18724783 GATCCTACTA
* * **
18724793 CCACAACCCTCG-TTTCGGTCTGATCTTAGACTGGGAATGAACACCGTATGCCTAAGTTAACCAC
1 CCACAACCCTCGATTT-GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAC
* * * * * *
18724857 AAAACAAGCGTTCAGGCACTGAGTCGACCGGAGAGGCATAATGCCCAAGCTGGGGCTCAGCCCTA
65 AAAACAAGCGTGCAGGCACTCAGTCGACCAGAGAGGCAGAATGCCCAAGCTGAGGATCAGCCCTA
*
18724922 TCCCCCTCTGCGTGCTGTCGATCCCACTACCGGTCCTGCTG
130 TCCCCCTCTGCATGCTGTCGATCCCACTACCGGTCCTGCTG
18724963 CCACAACCCTCGATTTGG-CTAAGGT-TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
1 CCACAACCCTCGATTTGGTCTAA--TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA-C
* * * * *
18725025 CACGAAACGAGCGTGC-GAGCGCTCAG-CAGGCCAGAGAGGCAGAATGCGCAAGCTGAGGATCAG
62 CACAAAACAAGCGTGCAG-GCACTCAGTC-GACCAGAGAGGCAGAATGCCCAAGCTGAGGATCAG
* * * *** * *
18725088 TCCTGT-CCCC-CTGCATGCTGTTGATCCTGTTGCTGGTCCTGCTG
125 CCCTATCCCCCTCTGCATGCTGTCGATCCCACTACCGGTCCTGCTG
* * * * *
18725132 TCGCAACCCTCGATTTGGTCTTATCCTAGACTGGGAATGAACTCCATATGC
1 CCACAACCCTCGATTTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGC
18725183 TTAGATATGG
Statistics
Matches: 181, Mismatches: 29, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
168 2 0.01
169 68 0.38
170 53 0.29
171 58 0.32
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (170 bp):
CCACAACCCTCGATTTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCACA
AAACAAGCGTGCAGGCACTCAGTCGACCAGAGAGGCAGAATGCCCAAGCTGAGGATCAGCCCTAT
CCCCCTCTGCATGCTGTCGATCCCACTACCGGTCCTGCTG
Found at i:18726601 original size:26 final size:26
Alignment explanation
Indices: 18726572--18726624 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18726562 TCGATCTGAT
18726572 CTTAGACT-GGGAATGAAC-TCTGTATG
1 CTTAGACTAGGG-ATGAACTTC-GTATG
18726598 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
18726624 C
1 C
18726625 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:18726977 original size:26 final size:26
Alignment explanation
Indices: 18726939--18726991 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18726929 TCGATTCGAT
18726939 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18726965 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18726991 C
1 C
18726992 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18726995 original size:183 final size:183
Alignment explanation
Indices: 18726781--18727148 Score: 492
Period size: 183 Copynumber: 2.0 Consensus size: 183
18726771 ACCGACTGGG
* ** * *
18726781 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTTCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCACTCAG
* * ** *
18726846 CCGATCAGAGAGGTAAAATGTGCAAGCCGGGGATC-GATTCGGTCCCCTCTGCGTGCT-GCGATC
66 CCGATCAGAGAGGCAAAATGTGCAAGCCGAGGATCGGCCT-GGTCCCC-CTACGTGCTAGCGATC
* * *
18726909 CTGCTACCGCAACCCTCAGTTC-GAT-TCGATCTTAGACTGGGAATGAACTCCGTAT
129 CTACTACCGCAACCCTC-GATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTAT
*
18726964 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCACTCAG
* * * * *
18727029 TCGATCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCTGGTCCCCCTACGTGCTATCGATCCT
66 CCGATCAGAGAGGCAAAATGTGCAAGCCGAGGATCGGCCTGGTCCCCCTACGTGCTAGCGATCCT
*
18727094 ACTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
131 ACTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
18727147 GC
1 GC
18727149 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
182 11 0.07
183 147 0.91
184 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCACTCAG
CCGATCAGAGAGGCAAAATGTGCAAGCCGAGGATCGGCCTGGTCCCCCTACGTGCTAGCGATCCT
ACTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:18733883 original size:26 final size:26
Alignment explanation
Indices: 18733845--18733897 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18733835 GGCTCAAAAT
** *
18733845 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
18733871 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
18733897 C
1 C
18733898 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:18734227 original size:159 final size:158
Alignment explanation
Indices: 18733870--18734372 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 158
18733860 AACTCTGTAT
* * * * *
18733870 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTACGGACACTCA-
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
* * * * * * *
18733934 ACTGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTATCGATC
66 CCT-ACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCAGCATGCTATCGATC
* * *
18733999 CTGTTGCCACAACCCTCAGTTCGATCCGA
130 CCGCTGCCACAACCCTCAGTCCGATCCGA
* * * * * *
18734028 TCTTAGAC-TGGGAATGAACTTCATATGCATAAGTCAACCCATAAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
* * * *
18734092 GCCTACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCAGCATGCTA-CTGG
65 GCCTACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CAGCATGCTATC-GA
* * * *
18734156 TCCCGCTGCCACAACCCT-TGATCCG-GCTGGG
128 TCCCGCTGCCACAACCCTCAG-TCCGATC-CGA
* * * * *
18734187 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
* * * * ** * *
18734252 CC-AGTCGGAGGGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTTGATC
66 CCTA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCAGCATGCTATCGATC
* ** * * *
18734316 CTGCTGCTGCAACCCTTAGTCCGGTCTGA
130 CCGCTGCCACAACCCTCAGTCCGATCCGA
* *
18734345 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
18734373 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 145 0.53
159 125 0.46
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
CCTACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCAGCATGCTATCGATCC
CGCTGCCACAACCCTCAGTCCGATCCGA
Found at i:18734375 original size:26 final size:26
Alignment explanation
Indices: 18734346--18734398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18734336 CCGGTCTGAT
*
18734346 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18734372 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18734398 C
1 C
18734399 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18734655 original size:335 final size:340
Alignment explanation
Indices: 18734155--18734776 Score: 827
Period size: 347 Copynumber: 1.8 Consensus size: 340
18734145 CATGCTACTG
* * *
18734155 GTCCCGCTGCCACAACCCTTGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCCGCTGCCACAAACCTAGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * *
18734220 CCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGTCGGAGGGGCAGAATGCGCAAGTCGGGGA
66 CCAACCCACGAAACGAGCATGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * * *
18734285 TCGGCCCGGTCCCCCCTGTGTGCTGTTGA-T-C-CT-G-CTGC-T-GCAACCCTT-AGTCCGGTC
131 TCGGCCCGATCCCCCCTGCGTGCTGTCGACTGCGCTGGCCTGCGTCGCAA-CCTTCAGTCCAGTC
* *
18734342 TGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGT
195 TGATCTTAGACTGGGAATG-ACTTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGC
*
18734405 CAAGCCACGAAACGAGCGTGCGGGCCCGTAGCAAGTCGGGGATCAGCTCGGTCCCCCTCTATGTG
258 CAACCCACGAAACGAGCGTGCGGGCCCGTAGCAAGTCGGGGATCAGCTCGGTCCCCCTCTATGTG
18734470 CTGTCGATCTCGCTGCCA
323 CTGTCGATCTCGCTGCCA
* *
18734488 GTCCTGCTGCCACAAACCTCAG-TCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 GTCCCGCTGCCACAAACCT-AGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * *
18734552 GCCAACCCCCATGAAACGAGCATGTGGGGGCTCAACC-GACCGGAGAGGCAGAATGTGCAAGCCG
65 GCCAA--CCCACGAAACGAGCATGCGGGCGCTCAACCAG-CCGGAGAGGCAGAATGCGCAAGCCG
* *
18734616 GGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCTTCG
127 GGGATCGGCCCGATCCCCCCTGCGTGCTGTCGA--CTGC-GCTGG-CCTGC-GTCGCAACCTTCA
* * *
18734681 GTCTAGTCTGATCTTAGACTGGGAATGACTTCTGTATGCTTAGACATGGAATGAACTCCGTATGC
187 GTCCAGTCTGATCTTAGACTGGGAATGACTTCCGTATGCTTAGACATGGAATGAACTCCATATGC
18734746 CTAAGCCAACCCACGAAACGAGCGTGCGGGC
252 CTAAGCCAACCCACGAAACGAGCGTGCGGGC
18734777 ACTCAGCCAG
Statistics
Matches: 245, Mismatches: 25, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
333 62 0.25
334 2 0.01
335 76 0.31
338 1 0.00
339 1 0.00
341 2 0.01
342 1 0.00
344 4 0.02
346 7 0.03
347 88 0.36
348 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (340 bp):
GTCCCGCTGCCACAAACCTAGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCACGAAACGAGCATGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGA
TCGGCCCGATCCCCCCTGCGTGCTGTCGACTGCGCTGGCCTGCGTCGCAACCTTCAGTCCAGTCT
GATCTTAGACTGGGAATGACTTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCCCGTAGCAAGTCGGGGATCAGCTCGGTCCCCCTCTATGTGCTG
TCGATCTCGCTGCCA
Found at i:18734743 original size:26 final size:26
Alignment explanation
Indices: 18734693--18734745 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
18734683 CTAGTCTGAT
*
18734693 CTTAGACTGGGAATGACTTCTGTATG
1 CTTAGACTGGGAATGACTTCCGTATG
18734719 CTTAGACAT-GGAATGAAC-TCCGTATG
1 CTTAGAC-TGGGAATG-ACTTCCGTATG
18734745 C
1 C
18734746 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGACTTCCGTATG
Found at i:18735017 original size:186 final size:184
Alignment explanation
Indices: 18734691--18735089 Score: 446
Period size: 186 Copynumber: 2.2 Consensus size: 184
18734681 GTCTAGTCTG
* * *
18734691 ATCTTAGACTGGGAATG-ACTTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACATGGAATGAACACCATACGCCTAAGCCAA
* * * * ** ** *
18734755 CCCACGAAACGAGCGTGCGGGCACTCAGCCAGTCGAAGAGGCAGAATGTGCAAGTCGGGGACCGA
65 CCCACAAAACGAGCGTACAGGCACTCAGCCAGCCGAAGAGGCAGAATGAACAAGTCAAGGACAGA
* * **
18734820 CCCGGTCCCCCCCCTTGCGTGCTGTCGATCCTACT-CTGCAACCCTCGA-TCTGCTCCA
130 CCCGAT--CCCCCC-TACGTGCTGTCGATCCTACTACCACAACCCTCGATTC-GCTCCA
*
18734877 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACACCATACGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACACCATACGCCTAAGCCAAC
* * * * * * *
18734942 CCATAAAATGAGCGTACAGGCGCTCAGTCGGCCGGATAGGCAGAATGAACAAGTCAAGGATCAG-
66 CCACAAAACGAGCGTACAGGCACTCAGCCAGCCGAAGAGGCAGAATGAACAAGTCAAGGA-CAGA
* * * * **
18735006 CCCGATCCCCCCTACGTGCTGTCGATCTTGCTACCACAACCCTCGGTTCGGTCTG
130 CCCGATCCCCCCTACGTGCTGTCGATCCTACTACCACAACCCTCGATTCGCTCCA
18735061 ATCTTAGACTGGGAATGAACTCTGTATGC
1 ATCTTAGACTGGGAATGAACTCTGTATGC
18735090 ATAAGTCAAC
Statistics
Matches: 178, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
183 17 0.10
184 47 0.26
185 2 0.01
186 108 0.61
187 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (184 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACACCATACGCCTAAGCCAAC
CCACAAAACGAGCGTACAGGCACTCAGCCAGCCGAAGAGGCAGAATGAACAAGTCAAGGACAGAC
CCGATCCCCCCTACGTGCTGTCGATCCTACTACCACAACCCTCGATTCGCTCCA
Found at i:18735309 original size:159 final size:158
Alignment explanation
Indices: 18734904--18735334 Score: 413
Period size: 159 Copynumber: 2.7 Consensus size: 158
18734894 AACTCCGTAT
* * ** * *
18734904 GCTTAGACATGGAATGAACACCATACGCCTAAGCCAACCCATAAAATGAGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * ** **
18734969 TCGGCCGGATAGGCAGAATGAACAAGTCAAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCT
66 TCGGCTGGAGAGGCAGAATGCGCAAACCAAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCT
* * *
18735034 TGCTACCACAACCCTCGGTTCGGTCTGA
131 CGCTACCACAACCCTCGGTCCAGTCTGA
* ** * * *
18735062 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * *
18735126 G-CCGATCGAAGAGGCATAATGCGCAAACCGAGGATC-GACCCGGTCCCCCTCTGCGTGCTG-CT
65 GTCGGCT-GGAGAGGCAGAATGCGCAAACCAAGGATCAG-CCCGATCCCCC-CTACGTGCTGTC-
* * *
18735188 GGTCTCGCTGCCACAACCCTCGGTCCAG-CTGGG
126 GATCTCGCTACCACAACCCTCGGTCCAGTCT-GA
* * * *
18735221 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * *
18735286 TCGGCTGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCTCGATCCCCCC
66 TCGGCTGGAGAGGCAGAATGCGCAAACCAAGGATCAGCCCGATCCCCCC
18735335 AGCGTACTAT
Statistics
Matches: 214, Mismatches: 50, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 86 0.40
159 119 0.56
160 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
TCGGCTGGAGAGGCAGAATGCGCAAACCAAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCT
CGCTACCACAACCCTCGGTCCAGTCTGA
Found at i:18735409 original size:26 final size:26
Alignment explanation
Indices: 18735380--18735430 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18735370 CCAGTTTGAT
*
18735380 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18735406 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
18735431 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18735904 original size:159 final size:159
Alignment explanation
Indices: 18735612--18735910 Score: 341
Period size: 159 Copynumber: 1.9 Consensus size: 159
18735602 CTTAAACATG
* * ** *
18735612 GAATGAACTCCATATGCCTAAGCCACCACACAAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGA
1 GAATGAACTCCATATGCCTAAGCAACCACACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGA
* * * * ***
18735677 GGCAGAATGCACAAGTTGGGGACCGACTCGATCCCCCCCTGTGTGCTATCGATCCTACTGCTGTA
66 GGCAAAATGCACAAGTTGGGGACCGACCCGATCCCCCCCTGCGTGCTATCGATCCCACTGCCACA
18735742 ACCCTCGGTCTGGTCCGATCTTACACTAT
131 ACCCTCGGTCTGGTCCGATCTTACACTAT
* * ** *
18735771 GAATGAACTTCATATGCCTAATTCAACC-CATGAAACGAGCGTGCGGGCGCTGAGCCGACCAGAG
1 GAATGAACTCCATATGCCTAA-GCAACCACACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
*** * * * * *
18735835 AGGCAAAATGTGTAAGTTGGGGATCGACCCTG-TCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCA
65 AGGCAAAATGCACAAGTTGGGGACCGACCC-GATCCCCCCCTGCGTGCTATCGATCCCACTGCCA
18735899 CAACCCTCGGTC
129 CAACCCTCGGTC
18735911 CGACTGGGGC
Statistics
Matches: 113, Mismatches: 25, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
159 108 0.96
160 5 0.04
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
GAATGAACTCCATATGCCTAAGCAACCACACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGA
GGCAAAATGCACAAGTTGGGGACCGACCCGATCCCCCCCTGCGTGCTATCGATCCCACTGCCACA
ACCCTCGGTCTGGTCCGATCTTACACTAT
Found at i:18736114 original size:26 final size:26
Alignment explanation
Indices: 18736078--18736130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18736068 CCGATCCGAT
*
18736078 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
* *
18736104 CTTAGGCTGGGGATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
18736130 C
1 C
18736131 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:18736681 original size:684 final size:685
Alignment explanation
Indices: 18734488--18736788 Score: 2371
Period size: 698 Copynumber: 3.3 Consensus size: 685
18734478 CTCGCTGCCA
* * *
18734488 GTCCTGCTGCCACAAACCTCAGTCCGGCT-AGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 GTCCCGCTGCCACAACCCTCAGTCCGGCTGA-GGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * ** * * *
18734552 GCCAACCCCCATGAAACGAGCATGTGGGGGCTCAACCGACCGGAGAGGCAGAATGTGCAAGCCGG
65 GCCAA--CCCATGAAACGAGCATGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGA
* * * * *
18734617 GGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCTTCGG
128 GGATCGGCCTGAT-CCCCC--C-TGC-GT--A--CTGC--C-GATCATACTGTCGCAACCCTCGA
* * *
18734682 T-CTAGTCTGATCTTAGACTGGGAATG-ACTTCTGTATGCTTAGACAT-GGAATGAACTCCGTAT
181 TCCGAGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGAC-TGGGGATGAACTCCGTAT
* * * *
18734744 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGTCGAAGAGGCAGAATGTGCAAG
244 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGTAAG
* * * *
18734809 TCGGGGA-CCGACCCGGTCCCCCCCCTTGCGTGCTGTCGATCCTACT-CTGCAACCCTCGATCTG
309 TCGGGGATCAGA-CCGGT---CCCCCTTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCG
* * * * *
18734872 CTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACACCATACGCCTAAG
370 GTCCAATCTTTGACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCATATGCCTAAG
* * * * * * **
18734937 CCAACCCATAAAATGAGCGTACAGGCGCTCAGTCGGCCGGATAGGCAGAATGAACAAGTCAAGGA
435 CCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGTCGGGGA
* * * * * *
18735002 TC-AGCCCGATCCCCCCTACGTGCTGTCGATCTTGCTACCACAACCCTCGGTTCGGTCTGATCTT
500 CCGA-CTCGATCCCCCCTGCGTGCTGTCGATCCTGCT-GCACAACCCTCGGTCCGGTCTGATCTT
* * *
18735066 AGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGA
563 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGA
* **
18735131 TCGAAGAGGCATAATGCGCAAACCGAGGATCGACCCGGTCCCCCTCTGCGTGCTG-CTG
628 TCGAAGAGGCATAATGTGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTC-G
* * * * *
18735189 GTCTCGCTGCCACAACCCTCGGTCCAGCTGGGGGTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCCGCTGCCACAACCCTCAGTCCGGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * *
18735254 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCTGGAGAGGCAGAATGCGCAAGTC-AGGG
66 CCAACCCATGAAACGAGCATGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGA-GG
* ** * **
18735318 ATCGG-CTCGATCCCCCCAGCGTACTATCGATCCTACTGTCGCAACCCTCGATCC-AGTTTGATC
130 ATCGGCCT-GATCCCCCCTGCGTACTGCCGATCATACTGTCGCAACCCTCGATCCGAGTCCGATC
* * *
18735381 TTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCA
194 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * * ** * * *
18735446 CAAAATGAGCGTGTGGGCACCCAGCCGACCGAAGAGGTAGAATGCATAAGTCGGGGATCA-ACTT
259 CGAAACGAGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGTAAGTCGGGGATCAGAC-C
* * *
18735510 GGTCCCCCTTGCGTGCTGCTGATCCTGCTGTTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCAA
323 GGTCCCCCTTGCGTGCTGCCGAT-C--C------TACTG---CCGCAACCCTCGATCCGGTCCAA
**
18735575 TCTTTGACTGGGAATGAACTTTGTATGCTTAAACATGGAATGAACTCCATATGCCTAAGCC-ACC
376 TCTTTGACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACC
* * * *
18735639 ACACAAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCACAAGTTGGGGACCGAC
441 -CACAAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGTCGGGGACCGAC
* * * ** * * *
18735704 TCGATCCCCCCCTGTGTGCTATCGATCCTACTGCTGTAACCCTCGGTCTGGTCCGATCTTACACT
505 TCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTGC-ACAACCCTCGGTCCGGTCTGATCTTAGACT
** * * * * *
18735769 ATGAATGAACTTCATATGCCTAATTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGA-CCAG
568 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCGA-
* * * * *
18735833 AGAGGCAAAATGTGTAAGTTGGGGATCGACCCTGTCCCCCTCTGCGTGCTGTCG
632 AGAGGCATAATGTGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
* * * *
18735887 GTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAAG
1 GTCCCGCTGCCACAACCCTCAGTCCGGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * *
18735952 CCAACCCATGAAATG-GATATGCGGGGGCTCAG-CTGGCCAGAGAGGCAGAATGCGCAAGCCGAG
66 CCAACCCATGAAACGAG-CATGCGGGCGCTCAGTC-GGCCGGAGAGGCAGAATGCGCAAGCCGAG
* * * *
18736015 GATCGGCCT-AGTCCCCACTGCGTACTGCCGATTATGCTGTCGCAACCCTCGGTCCGA-TCCGAT
129 GATCGGCCTGA-TCCCCCCTGCGTACTGCCGATCATACTGTCGCAACCCTCGATCCGAGTCCGAT
* *
18736078 CTTAGACTGGGAATGAACTCTGTATGCTTAGGCTGGGGATGAACTCGGTATGCCTAAGTCAACCC
193 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * * * *
18736143 ATGAAACGAGCGTGCGAGCATTCAGTCGGTTGGAGAGGCAAAATGCGTAAGCCAGGGATCAGTCC
258 ACGAAACGAGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGTAAGTCGGGGATCAGACC
* * *** *
18736208 GATCCCTCCTTGCATGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTTTGATCTTTGACTAG
323 GGTCCC-CCTTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTCCAATCTTTGACTGG
* * * * * *
18736273 GAA-GAACTCCGCATACTTAAAAATGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAG
387 GAATGAACTCCGTATGCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAG
* * * * * *
18736337 CGTGCAGGCGCTCAGCCAGCCAGAGAGGTAGAATGCTCAAGTCGGGGGCCGACTCGGT-CCCCCT
452 CGTGCAGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGTCGGGGACCGACTCGATCCCCCCT
* * * *
18736401 GCGTGCTGTAGATCCTGCTGTCACAACCCTCGGTCCGATCTGATCTTAGATTGGGAATAAACTCC
517 GCGTGCTGTCGATCCTGCTG-CACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * * *
18736466 GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTGAACCGATCGAAGAGGCATAATGTG
581 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCGAAGAGGCATAATGTG
*
18736531 CAAGTCGAGGATC-AGCCCGGTCCCCCTCTACGTGCTGTCG
646 CAAGTCGAGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCG
* * * **
18736571 GTCCCGCTGCCACAACCCTTAGTCTGGTTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAG
1 GTCCCGCTGCCACAACCCTCAGTCCGGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * *
18736636 CCAACCCAGGAAACGAGCGTGCAGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCGGGGA
66 CCAACCCATGAAACGAGCATGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGA
*** * * * * * * *
18736701 TAAACCTGATCCCCCCTACGTGCTGTCGATCCTACT-ACTGTAACCCTCGATCCG-GTCCAATCT
131 TCGGCCTGATCCCCCCTGCGTACTGCCGATCATACTGTC-GCAACCCTCGATCCGAGTCCGATCT
*
18736764 TAGACTGGGAATGAACTCCGTATGC
195 TAGACTGGGAATGAACTCTGTATGC
18736789 ATAAGTCAAG
Statistics
Matches: 1318, Mismatches: 238, Indels: 105
0.79 0.14 0.06
Matches are distributed among these distances:
683 2 0.00
684 334 0.25
685 7 0.01
686 99 0.08
687 169 0.13
688 5 0.00
690 6 0.00
692 1 0.00
693 3 0.00
694 2 0.00
695 2 0.00
696 5 0.00
697 133 0.10
698 414 0.31
699 76 0.06
701 60 0.05
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (685 bp):
GTCCCGCTGCCACAACCCTCAGTCCGGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCATGAAACGAGCATGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGA
TCGGCCTGATCCCCCCTGCGTACTGCCGATCATACTGTCGCAACCCTCGATCCGAGTCCGATCTT
AGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGTAAGTCGGGGATCAGACCGGT
CCCCCTTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTCCAATCTTTGACTGGGAAT
GAACTCCGTATGCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTG
CAGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGTCGGGGACCGACTCGATCCCCCCTGCGT
GCTGTCGATCCTGCTGCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCGAAGAGGCATAATGTGCAAGT
CGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
Found at i:18736874 original size:317 final size:315
Alignment explanation
Indices: 18736295--18737104 Score: 953
Period size: 316 Copynumber: 2.6 Consensus size: 315
18736285 ATACTTAAAA
* * *
18736295 ATGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGG
* * * ** * * * * *
18736360 AGAGGTAGAATGCTCAAGTCGGGGGCCGA-CTCGGTCCCCCTGCGTGCTGTAGATCCTGCTGTCA
66 AGAGGCAGAATGCACAAGCCGGGGATCGACCT-GATCCCCCTGCGTGCTGTCGATCCTACTCT-G
* * * * *
18736424 CAACCCTCGGTCCGATCTGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAA
129 TAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAA
** * ** *
18736489 ATGAGCGTGCGGGCGTTGAACCGATCGAAGAGGCATAATGTGCAAGTCGAGGATCAGCCCGGTCC
194 ATGAGCGTGCGGGCACTGAACCGACCGAAGAGGCATAATACGCAAGTCGAGGATCAGCCCAGTCC
* * **
18736554 CCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTTAGTCTGGTTGAGGCTTAGAC
259 CCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGACTGAGGCTTAGAC
* * *
18736611 ATGGAATGAACTCTGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGCGCTCAGTCGGCCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGG
** *
18736676 AGAGGCAGAATGCACAAGCCGGGGATAAACCTGATCCCCCCTACGTGCTGTCGATCCTACTACTG
66 AGAGGCAGAATGCACAAGCCGGGGATCGACCTGAT-CCCCCTGCGTGCTGTCGATCCTACT-CTG
* ** * *
18736741 TAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAGCCC-CAA
129 TAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCATAAGCCAA-CCCACAA
* * * * *
18736805 AATGAGCGTGCGGGCACTGAGCCGGCCGAAGATGCATAATACGCAAGTCGAGGATC-GACCTATT
193 AATGAGCGTGCGGGCACTGAACCGACCGAAGAGGCATAATACGCAAGTCGAGGATCAG-CCCAGT
** * * *
18736869 CCCCCTCTGTGTGCTGTCGGTCTCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGAC
257 CCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGACTGAGGCTTAGAC
* * * * * * *
18736928 ATGGAATGAACTCCCTATG-CAAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGTCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGG
** * * * * *
18736992 AGAGGCAGAATGCGTAAGCCGAGGATCGACCTAGTTCCCCCTGCGTGCTATCGATGCTACTGCCG
66 AGAGGCAGAATGCACAAGCCGGGGATCGACCT-GATCCCCCTGCGTGCTGTCGATCCTACT-CTG
18737057 TAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGC
129 TAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGC
18737105 TTAGACTGGG
Statistics
Matches: 415, Mismatches: 73, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
316 217 0.52
317 194 0.47
318 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (315 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGG
AGAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCCCCTGCGTGCTGTCGATCCTACTCTGTA
ACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAAT
GAGCGTGCGGGCACTGAACCGACCGAAGAGGCATAATACGCAAGTCGAGGATCAGCCCAGTCCCC
CTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGACTGAGGCTTAGAC
Found at i:18737030 original size:159 final size:160
Alignment explanation
Indices: 18736295--18737104 Score: 623
Period size: 158 Copynumber: 5.1 Consensus size: 160
18736285 ATACTTAAAA
* * * *
18736295 ATGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGG
* * * ** * * * *
18736360 AGAGGTAGAATGCTCAAGTCGGGGGCCGA-CTCGGT-CCCC-CTGCGTGCTGTAGATCCTGCTGT
66 AGAGGCAGAATGCGCAAGTCGAGGATCGACCTAGGTCCCCCTCTACGTGCTGTCGATCCTGCTGC
*
18736422 CACAACCCTCGGTCCGATCTG-ATCTTAGA-
131 CACAACCCTCGGTCCGA-CTGAAGCTTAGAC
* * * * * * **
18736451 TTGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTGAACCGATCG
1 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCG
* * * * * *
18736516 AAGAGGCATAATGTGCAAGTCGAGGATC-AGCC-CGGTCCCCCTCTACGTGCTGTCGGTCCCGCT
65 GAGAGGCAGAATGCGCAAGTCGAGGATCGA-CCTAGGTCCCCCTCTACGTGCTGTCGATCCTGCT
** * ** *
18736579 GCCACAACCCTTAGTCTGGTTGAGGCTTAGAC
129 GCCACAACCCTCGGTCCGACTGAAGCTTAGAC
* * * *
18736611 ATGGAATGAACTCTGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGCGCTCAGTCGGCCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGG
* * * ** * * *
18736676 AGAGGCAGAATGCACAAGCCGGGGATAAACCT-GATCCCCC-CTACGTGCTGTCGATCCTACTAC
66 AGAGGCAGAATGCGCAAGTCGAGGATCGACCTAGGTCCCCCTCTACGTGCTGTCGATCCTGCTGC
*** * * * *
18736739 TGTAACCCTCGATCCG-GTCCAATCTTAGAC
131 CACAACCCTCGGTCCGACT-GAAGCTTAGAC
* * * * * *
18736769 -TGGGAATGAACTCCGTATGCATAAGTCAAGCCC-CAAAATGAGCGTGCGGGCACTGAGCCGGCC
1 AT-GGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * ** *
18736832 GAAGATGCATAATACGCAAGTCGAGGATCGACCTA-TTCCCCCTCTGTGTGCTGTCGGT-CTCGC
64 GGAGAGGCAGAATGCGCAAGTCGAGGATCGACCTAGGTCCCCCTCTACGTGCTGTCGATCCT-GC
**
18736895 TGCCACAACCCTCGGTCCGACTGGGGCTTAGAC
128 TGCCACAACCCTCGGTCCGACTGAAGCTTAGAC
* * * * * *
18736928 ATGGAATGAACTCCCTATG-CAAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGTCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGG
* * * * * * *
18736992 AGAGGCAGAATGCGTAAGCCGAGGATCGACCTA-GTTCCCC-CTGCGTGCTATCGATGCTACTGC
66 AGAGGCAGAATGCGCAAGTCGAGGATCGACCTAGGTCCCCCTCTACGTGCTGTCGATCCTGCTGC
** * *
18737055 CGTAACCCTCGGTCCGGTCTG-ATCTTAGA-
131 CACAACCCTCGGTCC-GACTGAAGCTTAGAC
*
18737084 TTGGGAATGAACTCCGTATGC
1 AT-GGAATGAACTCCGTATGC
18737105 TTAGACTGGG
Statistics
Matches: 500, Mismatches: 132, Indels: 42
0.74 0.20 0.06
Matches are distributed among these distances:
156 3 0.01
157 131 0.26
158 191 0.38
159 171 0.34
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (160 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGG
AGAGGCAGAATGCGCAAGTCGAGGATCGACCTAGGTCCCCCTCTACGTGCTGTCGATCCTGCTGC
CACAACCCTCGGTCCGACTGAAGCTTAGAC
Found at i:18737107 original size:26 final size:26
Alignment explanation
Indices: 18737078--18737130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18737068 CCGGTCTGAT
*
18737078 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18737104 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18737130 C
1 C
18737131 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18738239 original size:158 final size:159
Alignment explanation
Indices: 18737837--18738339 Score: 494
Period size: 159 Copynumber: 3.2 Consensus size: 159
18737827 AACTCCGTAT
* * *
18737837 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * *
18737902 TCGACCGGAGAGGCAGAATGCGCAACTCGGGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCAATC
66 CCGACCGGAGAGGCAGAATGCGTAACTCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCAATC
** *
18737967 TTGCTGCCAGAACCCTCAGTCCGGTCTGA
131 CCGCTGCCACAACCCTCAGTCCGGTCTGA
* * * * * * * * * * **
18737996 TCTGAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACAAGCATACGGGCATTGT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * **
18738060 GCCGACCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCTGGTCCCCCTCTGTGTGCTGTCGGT
65 GCCGACCGGAGAGGCAGAATGCGTAACTCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCAAT
* *
18738125 CCCGCTGTCACAACCCTCAGTCCGG-CTGG
130 CCCGCTGCCACAACCCTCAGTCCGGTCTGA
* * * *
18738154 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
18738219 CCGGCCGGAGAGGCAGAATGCGTATGC-CGGGGATTGACCTGAT-CCCCCCAGCGTGCTATCGAT
66 CCGACCGGAGAGGCAGAATGCGTA-ACTCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCAAT
** * * * *
18738282 CTTGCAGCCGCAACCCTCGGTCTGGTCTGA
130 CCCGCTGCCACAACCCTCAGTCCGGTCTGA
*
18738312 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18738340 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 70, Indels: 11
0.77 0.20 0.03
Matches are distributed among these distances:
157 34 0.13
158 111 0.41
159 124 0.46
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGTAACTCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCAATC
CCGCTGCCACAACCCTCAGTCCGGTCTGA
Found at i:18738349 original size:26 final size:26
Alignment explanation
Indices: 18738313--18738363 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18738303 CTGGTCTGAT
18738313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18738339 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18738364 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18739051 original size:26 final size:26
Alignment explanation
Indices: 18739022--18739074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18739012 CCGATTCGAT
*
18739022 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
18739048 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
18739074 C
1 C
18739075 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:18739145 original size:355 final size:353
Alignment explanation
Indices: 18738000--18739176 Score: 1280
Period size: 354 Copynumber: 3.4 Consensus size: 353
18737990 GTCTGATCTG
* * * ** * * * **
18738000 AGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACAAGCATACGGGCATTGTGCC-G
1 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGG
* * *
18738064 ACCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCTGGTCCCCCTCTGTGTGCTGTCG-----G
66 A-CGAAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCG
* * * *
18738124 -T-CCCG-C-TG-T--CACAACCCTCAGTCCGGCT-GGGCTTAGACATGGAATGAACTCCCTATG
130 CTGCCAGTCATGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * *
18738181 CCTAAACCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGCCGGAGAGGCAGAATGCGTATGC
195 CCTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGTAAGC
* * * * *
18738246 CGGGGATTGACCTGATCCCCCCAGCGTGCTATCGATCTTGCAGCCGCAACCCTCGGTCTGGTCTG
260 CGGGGATCGACC-GATCCCCCTA-CGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTG
18738311 ATCTTAGACTGGGAATGAACTCCGTATGCTT
323 ATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
18738342 AGACTGGGGATGAACTCCGTATCCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAG-CTG
1 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGG
* * * *
18738406 ACCAGAGAGGCATAATGCGTAAGTCGGGGATCAGCTC-GACCCCTCTCTGCGTGCTGTCGATCCC
66 ACGA-AGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCC-CTCTGCGTGCTGTCGATCCC
*
18738470 GCTGCCAGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
129 GCTGCCAGTCATGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * * *
18738535 GCCTAATCCAACCCATGAAACAAGCGTGCGGGCACTCAACCGACCGAAGAGGGAGAATGCGCAAG
194 GCCTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGTAAG
* * * * *
18738600 CCGGGGATCGACCCG-TCCCCCCTGCATACTGTCGATCCTACTGCCGCAACCCTCGATCTGGTCT
259 CCGGGGATCGA-CCGAT-CCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT
*
18738664 GATCTTAGACTGGGAATGAACTCCTTATGCTT
322 GATCTTAGACTGGGAATGAACTCCGTATGCTT
* ** * ** *
18738696 AGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAATGAGTGTAAGGGCACTCAACC-G
1 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGG
* *
18738760 ACCGAAGAGGCATAACGCGTAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCG
66 A-CGAAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCG
* * * * ** *
18738825 CTGCCGGTCATGCTACCCCAACCCTGGGTCTGGTTGGGGCTTAGACATGGAATGAACTCTGTATG
130 CTGCCAGTCATGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * ** * * * * * * * **
18738890 CTTAAGCCAACTCACAAAATGAGCATACGGGCGCTCAACCGTCCGGAGAGGTAGAATACGTAAAT
195 CCTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGTAAGC
* * * *
18738955 CGAGGATCAACTCGATCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGAT-TC
260 CGGGGATCGAC-CGATCCCC-CTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-
18739019 GATCTTAGACTGGGAATGAACTCCGTATGCTT
322 GATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * * *
18739051 AGACAT-GGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGGCCACTCCGCCG
1 AGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCG
* * * * * * *
18739115 GTCGAAGAGGTAGAATGTGCAAGTCGAGGATCAGCCTGGTCCCCC-CTACGTGCTGTCGATCC
65 GACGAAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
18739177 TGCTATCGCA
Statistics
Matches: 695, Mismatches: 113, Indels: 42
0.82 0.13 0.05
Matches are distributed among these distances:
341 8 0.01
342 94 0.14
347 1 0.00
348 1 0.00
349 3 0.00
350 1 0.00
351 2 0.00
352 1 0.00
353 1 0.00
354 322 0.46
355 257 0.37
356 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (353 bp):
AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGG
ACGAAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGC
TGCCAGTCATGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGC
CTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGTAAGCC
GGGGATCGACCGATCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCTT
Found at i:18739172 original size:184 final size:184
Alignment explanation
Indices: 18738863--18739284 Score: 530
Period size: 184 Copynumber: 2.3 Consensus size: 184
18738853 TCTGGTTGGG
* * * * * * * *
18738863 GCTTAGACATGGAATGAACTCTGTATGCTTAAGCCAACTCACAAAATGAGCATACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCCACTCAA
* * *
18738928 CCGTCCGGAGAGGTAGAATACGTAAATCGAGGATCAACTCGATCCCCTCTACGTGCTGTCGATCC
66 CCGTCCGAAGAGGTAGAATACGCAAATCGAGGATCAACTCGATCCCCCCTACGTGCTGTCGATCC
* *
18738993 TGCTGCCGCAACCCTCGGTCCGATTC-GATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTACCGCAACCCTCGGTCCG-TTCTGATCTTAGACAGGGAATGAACTCCGTAT
* * * **
18739047 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGGCCACTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCCACTCAA
** * * *
18739112 CCGGT-CGAAGAGGTAGAATGTGCAAGTCGAGGATCAGC-CTGGTCCCCCCTACGTGCTGTCGAT
66 CC-GTCCGAAGAGGTAGAATACGCAAATCGAGGATCAACTC-GATCCCCCCTACGTGCTGTCGAT
* *
18739175 CCTGCTATCGCAACCCTCGGTCCGTTCTGATCTTTGACAGGGAATGAACTCCGTAT
129 CCTGCTACCGCAACCCTCGGTCCGTTCTGATCTTAGACAGGGAATGAACTCCGTAT
* *
18739231 GCTTAG-C-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
18739285 AAGTGCTCTG
Statistics
Matches: 204, Mismatches: 30, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
182 1 0.00
183 45 0.22
184 156 0.76
185 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCCACTCAA
CCGTCCGAAGAGGTAGAATACGCAAATCGAGGATCAACTCGATCCCCCCTACGTGCTGTCGATCC
TGCTACCGCAACCCTCGGTCCGTTCTGATCTTAGACAGGGAATGAACTCCGTAT
Found at i:18739964 original size:26 final size:26
Alignment explanation
Indices: 18739946--18740030 Score: 145
Period size: 26 Copynumber: 3.3 Consensus size: 26
18739936 GAATGCAATG
18739946 TGTATGCTTAGACATGGAATGAACTC
1 TGTATGCTTAGACATGGAATGAACTC
*
18739972 CGTATGCTTAGACATGGAATGAACTC
1 TGTATGCTTAGACATGGAATGAACTC
18739998 TGTATGCTTAGACATGGAATGAACT-
1 TGTATGCTTAGACATGGAATGAACTC
18740023 TCGTATGC
1 T-GTATGC
18740031 CTAAGCCAAC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
25 1 0.02
26 55 0.98
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
TGTATGCTTAGACATGGAATGAACTC
Found at i:18739991 original size:52 final size:52
Alignment explanation
Indices: 18739926--18740030 Score: 160
Period size: 52 Copynumber: 2.0 Consensus size: 52
18739916 GGCTCAAAAT
*
18739926 CTTAGACTAGGAATGCAA-TGTGTATGCTTAGACATGGAATGAACTCCGTATG
1 CTTAGACTAGGAATG-AACTCTGTATGCTTAGACATGGAATGAACTCCGTATG
*
18739978 CTTAGAC-ATGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATG
18740030 C
1 C
18740031 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
51 3 0.06
52 46 0.94
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (52 bp):
CTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATG
Found at i:18740204 original size:26 final size:26
Alignment explanation
Indices: 18740163--18740215 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18740153 CTGGTCTGAT
*
18740163 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18740189 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18740215 C
1 C
18740216 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18740903 original size:159 final size:157
Alignment explanation
Indices: 18740563--18740937 Score: 389
Period size: 158 Copynumber: 2.4 Consensus size: 157
18740553 ATGCTTCGAC
* * * *
18740563 ATGGAATGAACTCCGTATGCCTAAGCCGACCCATGAAATGAGCGTGCGGGCGCTCAGCCAGCCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCCAGCCGG
* * * * * *
18740628 AGACGCAGAATGCACTAGTTGGGGATCGACCCGGTCCCTCTTACGTGCTGTCAATCCTGTTGCCT
66 AGACGCAGAATGCACAAGTCGGGGATAGACCCGGTCCCCCTTACGTGCTGTCAATCCTGCTGCCA
*
18740693 CAACCCTCGATCCGGTCCGATCTTAGA
131 CAACCCTCGATCCGGTCCGAGCTTAGA
* * * * * *
18740720 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCATTGAGCCGGCCG
1 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCCAGCCG
* * * **
18740785 GAGAGGCATAATGCGCAAGTCGGGGATTAG-CCCGGTCCCCCTCTACGTGCTG-CTGGTCCTGCT
65 GAGACGCAGAATGCACAAGTCGGGGA-TAGACCCGGTCCCCCT-TACGTGCTGTC-AATCCTGCT
* * * *
18740848 GCCACAACCCTCGGTCTGG-CTGGGGCTTAGAA
127 GCCACAACCCTCGATCCGGTC-CGAGCTTAG-A
* * * *
18740880 ATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAAC-AGACGTGCGGGCGCTCAGC
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CATGCGGGCACTCAGC
18740938 TGACCGGGGA
Statistics
Matches: 176, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 89 0.51
159 84 0.48
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCCAGCCGG
AGACGCAGAATGCACAAGTCGGGGATAGACCCGGTCCCCCTTACGTGCTGTCAATCCTGCTGCCA
CAACCCTCGATCCGGTCCGAGCTTAGA
Found at i:18740958 original size:159 final size:156
Alignment explanation
Indices: 18740563--18740984 Score: 411
Period size: 159 Copynumber: 2.7 Consensus size: 156
18740553 ATGCTTCGAC
* * *
18740563 ATGGAATGAACTCCGTATGCCTAAGCCGACCCATGAAATGAGCGTGCGGGCGCTCAGCCAGCCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCGA-CCGG
* * * * * * * *
18740628 AGACGCAGAATGCACTAGTTGGGGATCGACCCGGTCCCTCTTACGTGCTGTCAATCCTGTTGCCT
65 AGAGGCAGAATGCGCAAGTCGGGGATAGACCCGGTCCCCCTTACGTGCTGTCAATCCTGCTGCCA
*
18740693 CAACCCTCGATCCGGTCCGATCTTAGA
130 CAACCCTCGATCCGGTCCGAGCTTAGA
* * * * ** * *
18740720 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCATTGAGCCGGCCG
1 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGACCG
* **
18740785 GAGAGGCATAATGCGCAAGTCGGGGATTAG-CCCGGTCCCCCTCTACGTGCTG-CTGGTCCTGCT
64 GAGAGGCAGAATGCGCAAGTCGGGGA-TAGACCCGGTCCCCCT-TACGTGCTGTC-AATCCTGCT
* * * *
18740848 GCCACAACCCTCGGTCTGG-CTGGGGCTTAGAA
126 GCCACAACCCTCGATCCGGTC-CGAGCTTAG-A
* *
18740880 ATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAAC-AGACGTGCGGGCGCTCAGCTGACCG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCAGC-GACCG
* * * * * *
18740944 GGGAGGCAGAATGCGTAAGCCCGGGATCGACCAGGTCCCCC
64 GAGAGGCAGAATGCGCAAGTCGGGGATAGACCCGGTCCCCC
18740985 CTGCCGTAAC
Statistics
Matches: 211, Mismatches: 44, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 89 0.42
159 119 0.56
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (156 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCGACCGGA
GAGGCAGAATGCGCAAGTCGGGGATAGACCCGGTCCCCCTTACGTGCTGTCAATCCTGCTGCCAC
AACCCTCGATCCGGTCCGAGCTTAGA
Found at i:18741053 original size:26 final size:26
Alignment explanation
Indices: 18741012--18741064 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18741002 CCGATCCGAT
*
18741012 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18741038 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
18741064 C
1 C
18741065 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18741120 original size:13 final size:13
Alignment explanation
Indices: 18741102--18741128 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18741092 GGGCGCTCAA
18741102 CCGGTCGGAGAGG
1 CCGGTCGGAGAGG
18741115 CCGGTCGGAGAGG
1 CCGGTCGGAGAGG
18741128 C
1 C
18741129 ATAATGCGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.52, T:0.07
Consensus pattern (13 bp):
CCGGTCGGAGAGG
Found at i:18741797 original size:26 final size:26
Alignment explanation
Indices: 18741768--18741820 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18741758 CCGGTTCAAT
18741768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18741794 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18741820 C
1 C
18741821 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18741956 original size:184 final size:182
Alignment explanation
Indices: 18741624--18741978 Score: 457
Period size: 184 Copynumber: 1.9 Consensus size: 182
18741614 TAGACATGAA
* * *
18741624 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACTAGCTAGAGGCA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACTAGCGAGAGGCA
18741689 GAATGCGCAAGCCGAGGATCAACCCAGTCCCCCCTGCATGCTGCCGATCCTGCTGACGCAACCCT
66 GAATGCGCAAGCCGAGGATCAACCCAGTCCCCCCTGCATGCTGCCGATCCTGCTGACGCAACCCT
18741754 CGGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
131 CGGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * * *
18741806 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC-AGTCGGTCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACT-AG-C-GAGAG
* * ** * * * * *
18741870 GCATAATGCGTAAGCCGAGGATCGGCCC-GATCCCCCCTGCGTGCTGTC-ATTCTTGTTGCCGCA
63 GCAGAATGCGCAAGCCGAGGATCAACCCAG-TCCCCCCTGCATGCTGCCGA-TCCTGCTGACGCA
* * *
18741933 ACCCTCGGTTCGG-TCTGATCTTAGACTGGGAATGAACTTCGTATGC
126 ACCCTCGGTCCGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGC
18741979 ATAAGTCAAC
Statistics
Matches: 148, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
181 2 0.01
182 47 0.32
183 5 0.03
184 94 0.64
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (182 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACTAGCGAGAGGCA
GAATGCGCAAGCCGAGGATCAACCCAGTCCCCCCTGCATGCTGCCGATCCTGCTGACGCAACCCT
CGGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
Found at i:18742165 original size:159 final size:158
Alignment explanation
Indices: 18741793--18742287 Score: 566
Period size: 158 Copynumber: 3.1 Consensus size: 158
18741783 AACTCCGTAT
* *
18741793 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
18741858 -TCGGTCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTC-ATT
66 CT-GGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGA-T
* * * *
18741921 CTTGTTGCCGCAACCCTCGGTTCGGTCTGA
129 CCTGCTGCCACAACCCTCGGTCCGGTCTGA
* * * *
18741951 TCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
18742016 CTGGCCGAAGAGGCATAATGGGCAAGTCGGGGATCGGCCCGGTCCCCTTCTGTGTGCTGTCGATC
66 CTGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCC-CCTGCGTGCTGTCGATC
* * * *
18742081 CCGCAGCCACAACCCTCGATCCGG-CTGGG
130 CTGCTGCCACAACCCTCGGTCCGGTCT-GA
* * * * * * *
18742110 GCTTAGACAT-GGAATGAACTCCGTATGCTTAAGCCAACACAGGAAACGGGTGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
18742174 GCAGGTTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCTGCGTGCTATCGATC
65 GCTGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* *
18742239 CTGCTGCCCCAACCCTCGGTCCGGTCCGA
130 CTGCTGCCACAACCCTCGGTCCGGTCTGA
* *
18742268 TCTTAGACTAGGAATGAACT
1 GCTTAGACTGGGAATGAACT
18742288 TTGTATGCTT
Statistics
Matches: 276, Mismatches: 54, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 151 0.55
159 122 0.44
160 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
CTGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGGTCTGA
Found at i:18742307 original size:26 final size:26
Alignment explanation
Indices: 18742269--18742321 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18742259 CCGGTCCGAT
*
18742269 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
18742295 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
18742321 C
1 C
18742322 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:18742419 original size:184 final size:183
Alignment explanation
Indices: 18742110--18742470 Score: 497
Period size: 184 Copynumber: 2.0 Consensus size: 183
18742100 TCCGGCTGGG
* * *
18742110 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACACAGGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACAGGAAACGAGCGTGCGGGCGCTCAG
* * * * *
18742175 CAGGTTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCTGCGTGCTATCGATCC
66 CAGATCGGAGAGGCAGAATGCGCAAACCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
* *
18742240 TGCTGCCCCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTTTGTAT
131 TGCTGCCCCAACCCT-GGTCCGATCCGATCTTAGACTAGGAATCAACTTTGTAT
* * * * * *
18742294 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACAGGAAACGAGCGTGCGGGCGCTCAG
* * *
18742359 CCGATCGGAGAGGCAGAATGCGTAAACCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
66 CAGATCGGAGAGGCAGAATGCGCAAACCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
*** * *
18742424 TGCTGCTGTAACCCTGGTCCGATCTGATCTTAGACTGGGAATCAACT
131 TGCTGCCCCAACCCTGGTCCGATCCGATCTTAGACTAGGAATCAACT
18742471 CCGTATGCCT
Statistics
Matches: 153, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
183 28 0.18
184 125 0.82
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACAGGAAACGAGCGTGCGGGCGCTCAG
CAGATCGGAGAGGCAGAATGCGCAAACCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
TGCTGCCCCAACCCTGGTCCGATCCGATCTTAGACTAGGAATCAACTTTGTAT
Found at i:18742753 original size:499 final size:499
Alignment explanation
Indices: 18741587--18742871 Score: 1634
Period size: 499 Copynumber: 2.6 Consensus size: 499
18741577 TGATCTCGCT
* *
18741587 GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC-
* * * * * * *
18741652 TGAAACGGGCGTGCGGGCACTCAACTAG-C-TAGAGGCAGAATGCGCAAGCCGAGGATCAACCCA
65 TGAAACGGGAGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCG
* * * *
18741715 GTCCCCCCTGCATGCTGCCGATCCTGCTGACGCAACCCTCGGTCCGGTTCAATCTTAGACTGGGA
130 GTCCCCCCTGCGTGCT-ACGATCCTGCTGACGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
*
18741780 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
194 ATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * *
18741845 TGCGGGCACTCAGTCGGTCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTGC
259 TGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAACCGAGGATCGACCCGATCCCCCCTGC
* * * * * * *
18741910 GTGCTGTCATTCTTGTTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGT
324 GTGCTATCATTCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATCAACTCCGT
* * * * **
18741975 ATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTTAGCTGGCCGAAGAGGCATAATGGGCA
389 ATGCATAAGTCAACCCACGAAATGAGCGTCCGGGCACTGAGCCGACCGAAGAGGCATAATGCACA
* * *
18742040 AGTCGGGGATCGGCCCGGTCCCCTTCTGTGTGCTGTCGATCCCGCA
454 AGTCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGATCCCACA
* * * *
18742086 GCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACACA
1 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC-CC
* * * * *
18742151 GGAAACGGGTGTGCGGGCGCTCAG-CAGGTTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCT
65 TGAAACGGGAGTGCGGGCGCTCAGCCA-GTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCC
* * * *
18742215 GATCCCCCCTGCGTGCTATCGATCCTGCTGCCCCAACCCTCGGTCCGGTCCGATCTTAGACTAGG
129 GGTCCCCCCTGCGTGCTA-CGATCCTGCTGACGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
** * * * *
18742280 AATGAACTTTGTATGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAG
193 AATGAACTCCGTATGCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
18742344 CGTGTGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAACCGGGGATCGACCCGATCCCCCCT
257 CGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAACCGAGGATCGACCCGATCCCCCCT
* *
18742409 GCGTGCTATCGA-TCCTGCTGCTGTAACCCT-GGTCCGATCTGATCTTAGACTGGGAATCAACTC
322 GCGTGCTATC-ATTCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATCAACTC
* * * * * *
18742472 CGTATGCCTAAGTTAATCCATGAAATGAGCGTCCGGGCACTGAGCCGACCGGAGGGGCATAATGC
386 CGTATGCATAAGTCAACCCACGAAATGAGCGTCCGGGCACTGAGCCGACCGAAGAGGCATAATGC
* * *
18742537 ATAAG-CTGGGG-TCGGCTCGGTCCCCCTCTGTGTGCTGCCGGTCCCACTA
451 ACAAGTC-GGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGATCCCAC-A
*
18742586 -CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCT
1 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCT
* * *
18742650 CGAAATGGGAGTGCGGGCGCTCAGCCAGTCGGAGAGGTAGAATGCGTAAGCCGAGGATCAGCCCG
66 -GAAACGGGAGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCG
* * * * * ** *
18742715 GTCCCTCCTACGTGCTACGGATCATGCTGTCGCAACCCTCGGTTCGAACCGATCTTAGATTGGGA
130 GTCCCCCCTGCGTGCTAC-GATCCTGCTGACGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * *
18742780 ATGAACTCCGTATGCTTAGATTGGGGATGAACTTTGTATGCCTAAGTCAACCCACAAAACGAGCG
194 ATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCG
* *
18742845 TGGGGGCGCTCAACCGATCGGAGAGGC
259 TGCGGGCGCTCAGCCGATCGGAGAGGC
18742872 CGGTCGGAGA
Statistics
Matches: 669, Mismatches: 104, Indels: 26
0.84 0.13 0.03
Matches are distributed among these distances:
498 4 0.01
499 351 0.52
500 94 0.14
501 218 0.33
502 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (499 bp):
GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCT
GAAACGGGAGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGG
TCCCCCCTGCGTGCTACGATCCTGCTGACGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAACCGAGGATCGACCCGATCCCCCCTGCGT
GCTATCATTCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATCAACTCCGTAT
GCATAAGTCAACCCACGAAATGAGCGTCCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAG
TCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGATCCCACA
Found at i:18743181 original size:26 final size:26
Alignment explanation
Indices: 18743143--18743195 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18743133 CCAGTTCGAT
18743143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18743169 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18743195 C
1 C
18743196 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18745559 original size:26 final size:26
Alignment explanation
Indices: 18745530--18745582 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18745520 CCGGTCTGAT
18745530 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18745556 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18745582 C
1 C
18745583 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18745939 original size:159 final size:157
Alignment explanation
Indices: 18745555--18746057 Score: 496
Period size: 158 Copynumber: 3.2 Consensus size: 157
18745545 AACTCCGTAT
* *
18745555 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18745620 CCGGCCTGAGAGGCAGAATGCGTAAG-CAGGGGATTGGCCCGGTCCCCCCTGCATGCTATCGATC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCA-GGGATTGGCCTGGT-CCCCCTGCGTGCTGTCGATC
**** * * *
18745684 CTGCTA-TTGTAACCCCCGGTCCGGTCTGA
129 CTGC-AGCCACAAACCCCGATCCGATCTGA
* * * * * * * *
18745713 TCTTAGAC-TGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGTGTACGTGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
18745777 GCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCCTGATCCCCCTTTGCGTGCTGTCGGT
65 GCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCTGGTCCCCC--TGCGTGCTGTCGAT
* * *
18745842 CCCGCAGCCACAAACCTCGATCCGAT-TGGG
128 CCTGCAGCCACAAACCCCGATCCGATCT-GA
* * *
18745872 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
18745937 CCGACCGGAAAGGCAGAATGCGCAAGCTAGGGATTGGCCTGGTCTCCCCTGCGTGCTGTCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCTGGTC-CCCCTGCGTGCTGTCGATCC
* * * * *
18746002 TGCTGCCAC-AACCCTTGGTCCGGTCCGA
130 TGCAGCCACAAACCC-CGATCCGATCTGA
*
18746030 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18746058 TTAGACTAAA
Statistics
Matches: 276, Mismatches: 58, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 11 0.04
158 141 0.51
159 119 0.43
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCTGGTCCCCCTGCGTGCTGTCGATCCT
GCAGCCACAAACCCCGATCCGATCTGA
Found at i:18747728 original size:26 final size:26
Alignment explanation
Indices: 18747692--18747744 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18747682 CCGATCCGAT
* * *
18747692 CTTAGTCTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18747718 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18747744 C
1 C
18747745 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18748420 original size:26 final size:26
Alignment explanation
Indices: 18748382--18748434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18748372 GGCTCAAAAT
**
18748382 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
18748408 CTTAGACAAGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
18748434 C
1 C
18748435 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:18748742 original size:158 final size:157
Alignment explanation
Indices: 18748408--18748749 Score: 393
Period size: 157 Copynumber: 2.2 Consensus size: 157
18748398 ACTCCATATG
* * * *
18748408 CTTAGACAAGGAATGAACTCCATATGCCCAAGCCAACCCACGGAACGAGCGTACGAGTGCTCAGC
1 CTTAGACAGGGAATGAACTCCATATGCACAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGC
** * * *
18748473 CGACAGGAGAAGCAGAATGCACAAACTGGGGATCGCACGGTCCCCCCTACGTGCTTTCGATCTTG
66 CGACAGGAGAAGCAGAATGCACAAACCAGGGATCGCACGGTCCCCACTACGTGCTATCGATCCTG
* * *
18748538 CTGCTACAACCCTTTGTCTGGTCTGAT
131 CTGCTACAACCCTTCGTCCGGTCCGAT
* * * * *
18748565 CTTAGACAGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGAGCGCTGAGC
1 CTTAGACAGGGAATGAACTCCATATGCACAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGC
* * * * * *
18748630 CGACCA-GAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCATTGCGTGCTATCGATCC
66 CGA-CAGGAGAAGCAGAATGCACAAACCAGGGATC-GCACGGTCCCCACTACGTGCTATCGATCC
* *
18748694 TGCT-ATCGCAACCC-TCGATCCGGTCCGAT
129 TGCTGCT-ACAACCCTTCG-TCCGGTCCGAT
*
18748723 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACAGGGAATGAACTCCATATGC
18748750 TTAGACCGAG
Statistics
Matches: 154, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
157 85 0.55
158 69 0.45
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACAGGGAATGAACTCCATATGCACAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGC
CGACAGGAGAAGCAGAATGCACAAACCAGGGATCGCACGGTCCCCACTACGTGCTATCGATCCTG
CTGCTACAACCCTTCGTCCGGTCCGAT
Found at i:18749109 original size:171 final size:172
Alignment explanation
Indices: 18748761--18749116 Score: 396
Period size: 171 Copynumber: 2.1 Consensus size: 172
18748751 TAGACCGAGG
* * * *
18748761 ATGAACTCCGTATGCCTAAGTCCACACACGAAACGTGCGTACGGGCGCTTAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCCACACACGAAACGAGCGTACGGGCACTCAGCCAACCGGAGAGG
* * * *
18748826 CATAATGCGCAAGCCGGGGGATTAGCCCGGTCCCCTTCTATGTGTTGTCAATCCCGCTACCAGTC
66 CAGAATGCGCAAGCCGGGGGATCAGCCCGGTCCCCTCCTACGTGTTGTCAATCCCGCTACCAGTC
** *
18748891 CTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGA
131 CTGCTGCCACAACCCTCAATCTGGCTGGAGCTTAGACATGGA
* * * *
18748933 ATGAACTCTGTATGCCTAAG-CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAACCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCC-ACACACGAAACGAGCGTACGGGCACTCAGCCAACCGGAGAG
* * * * * * **
18748997 GCAGAATTCGCAAGCC-GGGGATCAGTCCGGTCCCC-CCGTGCGTGTTGTCGATCCTGCTGCTGG
65 GCAGAATGCGCAAGCCGGGGGATCAGCCCGGTCCCCTCC-TACGTGTTGTCAATCCCGCTACCAG
* * * * * *
18749060 TCCTGCTGTCGCAACCCTCAATTTGGTTTGATCTTAGAC-TGGGA
129 TCCTGCTGCCACAACCCTCAATCTGGCTGGAGCTTAGACAT-GGA
18749104 ATGAACTCCGTAT
1 ATGAACTCCGTAT
18749117 CCTTAGACAT
Statistics
Matches: 151, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
170 2 0.01
171 82 0.54
172 67 0.44
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (172 bp):
ATGAACTCCGTATGCCTAAGTCCACACACGAAACGAGCGTACGGGCACTCAGCCAACCGGAGAGG
CAGAATGCGCAAGCCGGGGGATCAGCCCGGTCCCCTCCTACGTGTTGTCAATCCCGCTACCAGTC
CTGCTGCCACAACCCTCAATCTGGCTGGAGCTTAGACATGGA
Found at i:18749130 original size:26 final size:26
Alignment explanation
Indices: 18749092--18749142 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18749082 TTGGTTTGAT
18749092 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
18749118 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
18749143 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:18749476 original size:155 final size:157
Alignment explanation
Indices: 18749274--18749722 Score: 477
Period size: 155 Copynumber: 2.9 Consensus size: 157
18749264 GCCTGGTCTG
* *
18749274 ATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAATGAGCGTGCGGGCGCTAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAA
* * * *
18749339 GCCGATCAGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCCTCTGCATGCTGTCAAT
66 GCCGATCAGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTGCGTGCTATCGAT
* *
18749404 CCCGCTACTG-GGAA-TGAACTCT-A-T
131 CCCGCTACTGCGCAACT-AACTCTGACA
** * * *
18749428 ATGCTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGAGCGGGCACT
1 AT-CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT
* ** * * * * * *
18749492 CAGCCGGCCGGAGAGGTAGAATGCGTATGCCGGGGATCGGTCCGGTCCCCC-CTACGTGCTATCG
64 AAGCCGATCAGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTGCGTGCTATCG
* *
18749556 AT--C-CTACTGTCGCAACCCTCAGTCTGACCCA
129 ATCCCGCTACTG-CGCAA--CTAACTCTGA--CA
* *
18749587 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAA
* * * *
18749652 GCC-TTCCAGAGAGGCTTAATGCTCAAGCCGGGGATCGATCCGGTCCCCCTCTGCGTGCTATCGA
66 GCCGAT-CAGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTGCGTGCTATCGA
18749716 TCCCGCT
130 TCCCGCT
18749723 GCCACAACCC
Statistics
Matches: 236, Mismatches: 42, Indels: 26
0.78 0.14 0.09
Matches are distributed among these distances:
151 6 0.03
152 1 0.00
153 3 0.01
154 13 0.06
155 98 0.42
156 3 0.01
157 1 0.00
158 92 0.39
159 16 0.07
161 1 0.00
162 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAA
GCCGATCAGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTGCGTGCTATCGAT
CCCGCTACTGCGCAACTAACTCTGACA
Found at i:18749639 original size:158 final size:158
Alignment explanation
Indices: 18749118--18749933 Score: 660
Period size: 158 Copynumber: 5.2 Consensus size: 158
18749108 ACTCCGTATC
* * * * * *
18749118 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGTGCGCAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
18749183 TGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGAT-CGATCCGCTCTGTGTGCTATCGATCC
66 CGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGG-TCCGATCCCCCCTGCGTGCTATCGATCC
* * * *
18749247 TGCTGTCGCAACCTTCAGCCTGGTCTGAT
130 TACTGTCGCAACCCTCAGTCTGGCCTGAT
* * * *
18749276 CTTAGAC-TGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAATGAGCGTGCGGGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
18749340 CCGATCAGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCCTCTGCATGCTGTCAATC
65 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGTCCGATCCCCC-CTGCGTGCTATCGAT-
* * * *
18749405 CCGCTACTG--GGAA---TGA-ACT---CTATAT
128 -C-CTACTGTCGCAACCCTCAGTCTGGCCT-GAT
** * * * *
18749430 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGAGCGGGCACTCAG
1 -CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
18749495 CCGGCCGGAGAGGTAGAATGCGTATGCCGGGGATCGGTCCGGTCCCCCCTACGTGCTATCGATCC
65 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGTCCGATCCCCCCTGCGTGCTATCGATCC
* **
18749560 TACTGTCGCAACCCTCAGTCTGACCCAAT
130 TACTGTCGCAACCCTCAGTCTGGCCTGAT
* * *
18749589 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * ** * *
18749653 CCTTCCAGAGAGGCTTAATGC-TCAAGCCGGGGATCGATCCGGTCCCCCTCTGCGTGCTATCGAT
65 CCGACCGGAGAGGCAGAATGCGT-AAGCCGGGGATCGGTCCGATCCCCC-CTGCGTGCTATCGAT
** * * ** * *
18749717 CCCGCTGCCACAACCCTTGGTCCGG-CTGGGGT
128 CCTACTGTCGCAACCCTCAGTCTGGCCT--GAT
* * *
18749749 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * *
18749813 CGACCGGAGAGGCAGAATGCGTAAGTTGGGGATC-GACTCGATCCCCCCCTGCGTGCTACCAATC
66 CGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGTC-CGAT-CCCCCCTGCGTGCTATCGATC
* * *
18749877 CTACTGTTGCAACCCTCGGT-TCGGTCTGAT
129 CTACTGTCGCAACCCTCAGTCT-GGCCTGAT
18749907 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
18749934 TTAGAATGGG
Statistics
Matches: 519, Mismatches: 108, Indels: 61
0.75 0.16 0.09
Matches are distributed among these distances:
151 6 0.01
152 1 0.00
153 5 0.01
154 13 0.03
155 94 0.18
156 5 0.01
157 8 0.02
158 186 0.36
159 181 0.35
160 14 0.03
161 1 0.00
162 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGTCCGATCCCCCCTGCGTGCTATCGATCCT
ACTGTCGCAACCCTCAGTCTGGCCTGAT
Found at i:18749665 original size:313 final size:313
Alignment explanation
Indices: 18749097--18749933 Score: 860
Period size: 313 Copynumber: 2.7 Consensus size: 313
18749087 TTGATCTTAG
* * *
18749097 ACTGGGAATGAACTCCGTATCCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAA
1 ACTGGGAATGAACTCCATATCCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACAAA
* * * * *
18749162 ACGAGTGCGCAGGCACTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGATCGATCC
66 ACGAGCGAGCAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGATCGATCC
* * ** * * ** **
18749227 GCTCTGTGTGCTATCGATCCTGCTGTCGCAACCTTCAGCCTGGTCTGATCTTAGACTGGGAATGA
131 CCCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGCCTGACCCAATCTTAGACTGGGAATGA
* *
18749292 ACTCCGTATGCCAAAGTCAACCCATGAAATGAGCGTGCGGGCGCTAAGCCGATCAGAGAGGCATA
196 ACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGATCAGAGAGGCATA
* *
18749357 ATGCGCAAGCCGGGGATCGGTCCGATCCCCCTCTGCATGCTGTCAATCCCGCT
261 ATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCATGCTATCAATCCCGCT
* * *
18749410 ACTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAA
1 ACTGGGAATGAACTCCATATCCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACAAA
* * * * * * *
18749475 ATGAGCGAGCGGGCACTCAGCCGGCCGGAGAGGTAGAATGCGTATGCCGGGGATCGG-TCCGGTC
66 ACGAGCGAGCAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGAT-CGATC
*
18749539 CCCCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGTCTGACCCAATCTTAGACTGGGAATG
130 CCCCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGCCTGACCCAATCTTAGACTGGGAATG
* * * *
18749604 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC-TTCCAGAGAGGCT
195 AACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGAT-CAGAGAGGCA
* * * *
18749668 TAATGCTCAAGCCGGGGATCGATCCGGTCCCCCTCTGCGTGCTATCGATCCCGCT
259 TAATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCATGCTATCAATCCCGCT
* *** * * **** **
18749723 GC-CACAACCCTTG--GTCCGGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 ACTGGGAA----TGAACTCC--AT-ATCCTTAGACATGGAATGAACTCTATATGCCTAAGCCAAC
** * * * * * ** *
18749785 CCATGAAACGGGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGTTGGGGATC-GA
59 CCACAAAACGAGCGAGCAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGA
* * * * ** ** **
18749849 CTCGATCCCCCCCTGCGTGCTACCAATCCTACTGTTGCAACCCTC-GGTTCGGTCTGATCTTAGA
124 -TCGAT-CCCCCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGCCT-GACCCAATCTTAGA
18749913 CTGGGAATGAACTCCGTATGC
186 CTGGGAATGAACTCCGTATGC
18749934 TTAGAATGGG
Statistics
Matches: 436, Mismatches: 75, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
312 4 0.01
313 269 0.62
314 2 0.00
316 4 0.01
317 91 0.21
318 66 0.15
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (313 bp):
ACTGGGAATGAACTCCATATCCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACAAA
ACGAGCGAGCAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGATCGATCC
CCCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGCCTGACCCAATCTTAGACTGGGAATGA
ACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGATCAGAGAGGCATA
ATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCATGCTATCAATCCCGCT
Found at i:18749890 original size:159 final size:159
Alignment explanation
Indices: 18749118--18749933 Score: 556
Period size: 159 Copynumber: 5.2 Consensus size: 159
18749108 ACTCCGTATC
** ** * * * *
18749118 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGTGCGCAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
18749183 TGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGAT-CGAT-CCGCTCTGTGTGCTATCGATC
66 CGACCGGAGAGGCAGAATGCGTAAGCCGGGGA-TCGATCCGGTCCCCCCCTGCGTGCTATCGATC
* * ** **
18749246 CTGCTGTCGCAACCTTCAG-CCTGGTCTGAT
130 CTACTGTCGCAACCCTCAGTCC-GACCCAAT
* * * * * *
18749276 CTTAGAC-TGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAATGAGCGTGCGGGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
18749340 CCGATCAGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCCTCTGCATGCTGTCAATC
65 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGATCCGGTCCCCCCCTGCGTGCTATCGAT-
* * *
18749405 CCGCTACTG--GGAA---T--G---AACTCTATAT
129 -C-CTACTGTCGCAACCCTCAGTCCGAC-CCA-AT
* * * *
18749430 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGAGCGGGCACTCAG
1 -CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
18749495 CCGGCCGGAGAGGTAGAATGCGTATGCCGGGGATCGGTCCGGT-CCCCCCTACGTGCTATCGATC
65 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGATCCGGTCCCCCCCTGCGTGCTATCGATC
*
18749559 CTACTGTCGCAACCCTCAGTCTGACCCAAT
130 CTACTGTCGCAACCCTCAGTCCGACCCAAT
* * *
18749589 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * ** *
18749653 CCTTCCAGAGAGGCTTAATGC-TCAAGCCGGGGATCGATCCGGTCCCCCTCTGCGTGCTATCGAT
65 CCGACCGGAGAGGCAGAATGCGT-AAGCCGGGGATCGATCCGGTCCCCCCCTGCGTGCTATCGAT
** * * ** * ****
18749717 CCCGCTGCCACAACCCTTGGTCCGGCTGGGGT
129 CCTACTGTCGCAACCCTCAGTCCGAC-CCAAT
* * * *
18749749 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
18749813 CGACCGGAGAGGCAGAATGCGTAAGTTGGGGATCGA-CTCGATCCCCCCCTGCGTGCTACCAATC
66 CGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGATC-CGGTCCCCCCCTGCGTGCTATCGATC
* * * ** **
18749877 CTACTGTTGCAACCCTCGGTTCGGTCTGAT
130 CTACTGTCGCAACCCTCAGTCCGACCCAAT
*
18749907 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
18749934 TTAGAATGGG
Statistics
Matches: 517, Mismatches: 112, Indels: 57
0.75 0.16 0.08
Matches are distributed among these distances:
151 6 0.01
152 1 0.00
153 5 0.01
154 17 0.03
155 90 0.17
156 2 0.00
157 7 0.01
158 175 0.34
159 198 0.38
160 8 0.02
161 3 0.01
162 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGATCCGGTCCCCCCCTGCGTGCTATCGATCC
TACTGTCGCAACCCTCAGTCCGACCCAAT
Found at i:18750320 original size:26 final size:26
Alignment explanation
Indices: 18750291--18750343 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18750281 CCAGTCCGAT
18750291 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
18750317 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
18750343 C
1 C
18750344 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:18757328 original size:159 final size:156
Alignment explanation
Indices: 18756956--18757451 Score: 437
Period size: 158 Copynumber: 3.1 Consensus size: 156
18756946 AACTCCGTAT
* * *
18756956 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18757021 CTGGCCAGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCTAATTCCCCCTGCGTGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCC-GA-TCCCCCTGCGTGCTGTCGATCC
* **
18757086 TACTGCTGCAACCCTCGGTCCGATCCGA
129 CACTGCCACAACCCTCGGTCCGATCCGA
* * * * * * * * *
18757114 TCTTAGAC-TGGGAACGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
18757178 GCCGGCCAAAGAGGCATAATGCGCAAGTCGGGGATCAGCTCGATCCCCCTTTGCGTGCTGTCGGT
65 GCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGC-CGATCCCCC--TGCGTGCTGTCGAT
* * * *
18757243 CCCACTGCCACAACCTTCGGTCCG-GCTGGG
127 CCCACTGCCACAACCCTCGGTCCGATC-CGA
* * * * *
18757273 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
18757338 TCGG-CAGGAGAGGCAGAATGCACAAGCCGGTGATCGGCCCGATCCCCTCTGTGTGCTG-CGAAT
66 CCGGCCA-GAGAGGCAGAATGCGCAAGTCGGGGATCGG-CCGATCCCC-CTGCGTGCTGTCG-AT
*** * * *
18757401 CCTGTTGTCACAACCCTCAGTCCTG-TCCAA
127 CCCACTGCCACAACCCTCGGTCC-GATCCGA
*
18757431 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
18757452 TGTATGCTTA
Statistics
Matches: 266, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 10 0.04
158 130 0.49
159 123 0.46
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCGATCCCCCTGCGTGCTGTCGATCCCA
CTGCCACAACCCTCGGTCCGATCCGA
Found at i:18757461 original size:26 final size:26
Alignment explanation
Indices: 18757432--18757484 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18757422 CCTGTCCAAT
*
18757432 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18757458 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18757484 C
1 C
18757485 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18757973 original size:487 final size:503
Alignment explanation
Indices: 18757411--18758558 Score: 1172
Period size: 524 Copynumber: 2.3 Consensus size: 503
18757401 CCTGTTGTCA
* * * *
18757411 CAACCCTCAGTCCTG-TCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGA
1 CAACCCTCAGACC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGA
* * *
18757474 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAAGCAGA
64 ACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAAGCAAA
** * ** *
18757539 ATGTGCAAGCCGGGGTTCGACCCGATC-CCCC-TACGTACTGTCGATC-CTACTATCGCAACCCT
129 ATGCACAAGCCGAGGACCGACCCGATCTCCCCATACGTACTATCGA-CGCTACTATCGCAACCCT
* *
18757601 CGATCCGATCTGATCTTAGACT-GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGA-GC
193 CGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGGC
* * * * *
18757664 G-TGTG-GG-C-C-T-TG-A-TC-GA-C-C-CGATCCCCCTTTACGTGCTGTCGATCCCGCTGCC
258 GTTGAGCGGCCGCATATGAAGCCGGATCACTCGATCCCCCTCTACATGCTATCGATCCCGCTGCC
**
18757717 GGTCCTGCCACCACAACCCTCAGTCTGGCTAGGG-CTTAGACATGGAATGAACTTCGTATGCCTA
323 GGTCCTGCCACCACAACCCTCAGTCCAGCT-GGGTCTTAGACATGGAATGAACTTCGTATGCCTA
* * *
18757781 AGCCAAACCATGAAACGAGCATGCGGGTGCTCAATC-GACCGGAGAGGCAGAATGCGCAAG-CGG
387 AGCCAAACCACGAAACGAGCATGCGGGCGCTC-ACCGGACCGGAGAGGCAGAATGCGCAAGTC-G
* * * * * *
18757844 TGGATTGGCCCGGTCCCCCTGCGTGCTGTCGAACCTGTGCTGGTCCTGTTGCCG
450 CGAATTAGCCCAGTCCCCCTGCGTGCTGTCGAACCTATGCTGGTCCTGCTGCCG
* * *
18757898 CAACCTTTAGACCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCAGACCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * * * *
18757963 TCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAGTCGGCCGGAGAGGCAAAAT
66 TCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAAGCAAAAT
* * * * * * * * *
18758028 GCACAAGCCGAGGACCGGCCCGATCTCCCCATGCGTGCTATTGACGTTGCTGTCGCAACCCTTGG
131 GCACAAGCCGAGGACCGACCCGATCTCCCCATACGTACTATCGACGCTACTATCGCAACCCTCGA
** * **
18758093 TTTGGTCCGATCTTAGGTTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGC
196 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGA------
*
18758158 GGGCGTTGAGCCGGCCGGAGAGGCATAATGCACAAGCCGGGGATCGACTCGATCCCCCTCTGCAT
255 -GGCGTTGAG-CGGCC------GCAT-ATG---AAGCC--GGATC-ACTCGATCCCCCTCTACAT
** ** *
18758223 GCTATCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTTGGTCCATCTGGGTCTTAGACATGGAA
305 GCTATCGATCCCGCTGCCGGTCCTGCCACCACAACCCTCAGTCCAGCTGGGTCTTAGACATGGAA
* * * *
18758288 TGAACTTCGTATGCCTAAGCCAACCCGCGAAACGAGCGTGCGGGCGCTCACCGGGCCGGAGAGGC
370 TGAACTTCGTATGCCTAAGCCAAACCACGAAACGAGCATGCGGGCGCTCACCGGACCGGAGAGGC
* *
18758353 AGAATGTGCAAGTCGCGAATTAGCCCAGTCCCCCTGCGTGCTGTCGATCCTATGCTGGTCCTGCT
435 AGAATGCGCAAGTCGCGAATTAGCCCAGTCCCCCTGCGTGCTGTCGAACCTATGCTGGTCCTGCT
*
18758418 GTCG
500 GCCG
* * * * * *
18758422 TAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTATACATGGAATGAAC
1 CAACCCTCAGACCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * ** *
18758487 TCCGTATGCCTAAGCCAACTCAAGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAG-AGACAGAA
66 TCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAAG-CAAAA
18758551 TGCACAAG
130 TGCACAAG
18758559 TCAGGGATCA
Statistics
Matches: 532, Mismatches: 85, Indels: 51
0.80 0.13 0.08
Matches are distributed among these distances:
486 1 0.00
487 130 0.24
488 6 0.01
489 36 0.07
490 38 0.07
498 3 0.01
499 3 0.01
501 2 0.00
502 1 0.00
509 1 0.00
510 1 0.00
512 2 0.00
516 1 0.00
517 1 0.00
520 2 0.00
521 1 0.00
523 7 0.01
524 295 0.55
525 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (503 bp):
CAACCCTCAGACCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAAGCAAAAT
GCACAAGCCGAGGACCGACCCGATCTCCCCATACGTACTATCGACGCTACTATCGCAACCCTCGA
TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGGCGTT
GAGCGGCCGCATATGAAGCCGGATCACTCGATCCCCCTCTACATGCTATCGATCCCGCTGCCGGT
CCTGCCACCACAACCCTCAGTCCAGCTGGGTCTTAGACATGGAATGAACTTCGTATGCCTAAGCC
AAACCACGAAACGAGCATGCGGGCGCTCACCGGACCGGAGAGGCAGAATGCGCAAGTCGCGAATT
AGCCCAGTCCCCCTGCGTGCTGTCGAACCTATGCTGGTCCTGCTGCCG
Found at i:18758387 original size:171 final size:168
Alignment explanation
Indices: 18757945--18758469 Score: 409
Period size: 159 Copynumber: 3.2 Consensus size: 168
18757935 ACTCCGTATG
* * * *
18757945 CTTAGACAT-GGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * *
18758009 TCGGCCGGAGAGGCAAAATGCACAAGCCGAGGACCGGCCCGATCTCCCCATGCGTGCTAT---T-
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGCGAATAGACCCGATC-CCCC-TGCATGCTATCGATC
* * * ** * *
18758070 -GA---C-GT--TGCTGTCGCAACCCTTGGTTTGGTCCGAT
128 CGATGCCGGTCCTGCTGCCACAACCCTCGGTCCGATCTGAT
** * * * *
18758104 CTTAGGTTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18758169 CGGCCGGAGAGGCATAATGCACAAGCCGGGGATCGACTCGATCCCCCTCTGCATGCTATCGATCC
66 CGGCCGGAGAGGCAGAATGCACAAGCCGCGAATAGACCCGAT-CCCC-CTGCATGCTATCGAT-C
* * *
18758234 CGCTGCCGGTCCTGCTGCCACAACCCTTGGTCC-ATCTGGGT
128 CGATGCCGGTCCTGCTGCCACAACCCTCGGTCCGATCT-GAT
* * *
18758275 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCGCGAAACGAGCGTGCGGGCGCTCA-
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
18758338 CCGGGCCGGAGAGGCAGAATGTGCAAGTCGCGAATTAG-CCC-AGTCCCCCTGCGTGCTGTCGAT
65 CC-GGCCGGAGAGGCAGAATGCACAAGCCGCGAA-TAGACCCGA-TCCCCCTGCATGCTATCGAT
* * * ** *
18758401 CCTATGCTGGTCCTGCTGTCGTAACCCTCGGTCCGGTCTGAT
127 CCGATGCCGGTCCTGCTGCCACAACCCTCGGTCCGATCTGAT
18758443 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18758470 TTATACATGG
Statistics
Matches: 291, Mismatches: 53, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
158 1 0.00
159 102 0.35
160 2 0.01
162 1 0.00
165 1 0.00
167 1 0.00
168 54 0.19
169 18 0.06
170 9 0.03
171 99 0.34
172 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.21
Consensus pattern (168 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCACAAGCCGCGAATAGACCCGATCCCCCTGCATGCTATCGATCCGA
TGCCGGTCCTGCTGCCACAACCCTCGGTCCGATCTGAT
Found at i:18758472 original size:26 final size:26
Alignment explanation
Indices: 18758443--18758495 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18758433 CCGGTCTGAT
18758443 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18758469 CTTATACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18758495 C
1 C
18758496 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18758681 original size:196 final size:194
Alignment explanation
Indices: 18758275--18758723 Score: 589
Period size: 196 Copynumber: 2.3 Consensus size: 194
18758265 CCATCTGGGT
* **
18758275 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCGCGAAACGAGCGTGCGGGCGCTCACC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCACC
* ** * *
18758340 GGGCCGGAGAGGCAGAATGTGCAAGTCGCGAATTAGCCCAGTCCCCCTGCGTGCTGTCGATCCTA
66 GGGCCGGAGAGACAGAATGCACAAGTCGCGAATCAGCCCAGTCCCCCTACGTGCTGTCGATCCTA
* * * * * **
18758405 TGCTGGTCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
131 TGCTGGTCCTACTCTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * *
18758469 CTTATACATGGAATGAACTCCGTATGCCTAAGCCAACTCAAGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCA-C
* * * *
18758534 C-GGTCGGAGAGACAGAATGCACAAGTCAG-GGATCAGCCCGGTCCCCCCTACGTGTTGTCGATC
65 CGGGCCGGAGAGACAGAATGCACAAGTC-GCGAATCAGCCCAGT-CCCCCTACGTGCTGTCGATC
*
18758597 CTACTGCTGGTCCTACTACT-GCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTTCG
128 CTA-TGCTGGTCCTACT-CTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCG
18758661 TATG
191 TATG
* * * *
18758665 CTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCG
18758724 TTGAGCCGGC
Statistics
Matches: 220, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
194 89 0.40
195 24 0.11
196 106 0.48
197 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (194 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCACC
GGGCCGGAGAGACAGAATGCACAAGTCGCGAATCAGCCCAGTCCCCCTACGTGCTGTCGATCCTA
TGCTGGTCCTACTCTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18759412 original size:159 final size:158
Alignment explanation
Indices: 18759020--18759774 Score: 621
Period size: 159 Copynumber: 4.8 Consensus size: 158
18759010 CCTATCCAAT
* * * *
18759020 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
* * * * * ** ** *
18759084 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGA-CTGACCCGATCCCCCCCTGTGTGCTATCGAT
65 CCGGCCGGAGAGGCATAATGCGCAAGCC-GGGATC-GACCCGGTCCCCCTCTACGTGCTGCCGGT
** ** ** * * **
18759148 CCTACTATCGTAACCCTCAGTCCAGCT-GAT
128 CCCGCTGCCACAACCCTCGGTCTAGCTGGGG
* * * * *
18759178 CTTAGAC-TGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCT-AG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCA-
* * * *
18759241 GCCAGCCAGAGAGGCATAATACGCAAGCCTGGGATCGACCTGGTCCCCCTCTACGTGCTGCCGGT
64 GCCGGCCGGAGAGGCATAATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCTACGTGCTGCCGGT
*
18759306 CCCGCTGCCACAACCCACGGTCTAGCTGGGG
128 CCCGCTGCCACAACCCTCGGTCTAGCTGGGG
* * * * * *
18759337 CTTAGACATGGAATAAACTCCCTACGCCTAAGCCAACCCACAAAATGGGCATGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
* * * * * * * *
18759402 CGGTCGGAGAGGCAGAATGCGCAAGCCGAAGATTGGCCCGATCCACCC-CTACGTGCTGTCGATC
66 CGGCCGGAGAGGCATAATGCGCAAGCCG-GGATCGACCCGGTCC-CCCTCTACGTGCTGCCGGTC
* * * * **
18759466 CTGCTGCCACAACCCTCGATCCGATCT-GAT
129 CCGCTGCCACAACCCTCGGT-CTAGCTGGGG
** * * * * *
18759496 CTTAGA-ATGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
* ** ** *
18759560 CCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCTTCTCTGTGTGCTGCCAGTC
65 CCGGCCGGAGAGGCATAATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCTACGTGCTGCCGGTC
* *
18759625 CCGCTACCACAACCCTTC-GTCTGGCTGGGG
129 CCGCTGCCACAACCC-TCGGTCTAGCTGGGG
* * *
18759655 CTTAGACATGAAATGAACTCCCTATGCCCAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
* * * * ** *
18759720 CGGCCGGAGAGGCAAAATGCACAAGTCTGGATCGGTCCGATCCCCC-CTACGTGCT
66 CGGCCGGAGAGGCATAATGCGCAAGCCGGGATCGACCCGGTCCCCCTCTACGTGCT
18759775 ATCGATCCTG
Statistics
Matches: 468, Mismatches: 115, Indels: 29
0.76 0.19 0.05
Matches are distributed among these distances:
157 8 0.02
158 145 0.31
159 301 0.64
160 14 0.03
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCATAATGCGCAAGCCGGGATCGACCCGGTCCCCCTCTACGTGCTGCCGGTCCC
GCTGCCACAACCCTCGGTCTAGCTGGGG
Found at i:18759596 original size:318 final size:314
Alignment explanation
Indices: 18759020--18759788 Score: 972
Period size: 318 Copynumber: 2.4 Consensus size: 314
18759010 CCTATCCAAT
* * * *
18759020 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
* * * **
18759084 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGACTGACCCGATCCCCCCCTGTGTGCTATCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCC--GGATTGGCCCGAT-CCCCCCTACGTGCTATCGATC
* ** ** *
18759149 CTACTATCGTAACCCTCAGTCCAGCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAA
127 CTGCTGCCACAACCCTCAGTCCAGCTGATCTTAGAATGGGAATGAACTCCTTATGCCTAAGTCAA
* *
18759214 CCCACGAAACGAGCGTGAGGGCGCTAGGCCAGCCAGAGAGGCATAATACGCAAGCCTGGGATCGA
192 CCCACGAAACGAGCGTGAGGGCACTAGGCCAGCCAGAGAGGCATAATACGCAAGCCGGGGATCGA
* * *
18759279 CCTGGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCC-ACGGTCTAGCTGGGG
257 CCCGGTCCCCCTCTACGTGCTGCCAGTCCCGCTACCACAACCCTAC-GTCTAGCTGGGG
* * * * * *
18759337 CTTAGACATGGAATAAACTCCCTACGCCTAAGCCAACCCACAAAATGGGCATGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
*
18759402 CGGTCGGAGAGGCAGAATGCGCAAGCCGAAGATTGGCCCGATCCACCCCTACGTGCTGTCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCG--GATTGGCCCGATCC-CCCCTACGTGCTATCGATCC
*
18759467 TGCTGCCACAACCCTC-GATCCGATCTGATCTTAGAATGGGAATGAACT-CTATATGCCTAAGTC
128 TGCTGCCACAACCCTCAG-TCC-AGCTGATCTTAGAATGGGAATGAACTCCT-TATGCCTAAGTC
* * *
18759530 AACCCACGAAACGAGCGTGCGGGCACT-GAGCCAGCCGGAGAGGCATAATGCGCAAGCCGGGGAT
190 AACCCACGAAACGAGCGTGAGGGCACTAG-GCCAGCCAGAGAGGCATAATACGCAAGCCGGGGAT
** ** * *
18759594 CGACCCGGTCCTTCTCTGTGTGCTGCCAGTCCCGCTACCACAACCCTTCGTCTGGCTGGGG
254 CGACCCGGTCCCCCTCTACGTGCTGCCAGTCCCGCTACCACAACCCTACGTCTAGCTGGGG
* * *
18759655 CTTAGACATGAAATGAACTCCCTATGCCCAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
* * * * * *
18759720 CGGCCGGAGAGGCAAAATGCACAAGTCTGGATCGGTCCGATCCCCCCTACGTGCTATCGATCCTG
66 CGGTCGGAGAGGCAGAATGCGCAAG-CCGGATTGGCCCGATCCCCCCTACGTGCTATCGATCCTG
18759785 CTGC
130 CTGC
18759789 TGGTCCTCCT
Statistics
Matches: 389, Mismatches: 53, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
315 1 0.00
316 28 0.07
317 135 0.35
318 222 0.57
319 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.18
Consensus pattern (314 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGATTGGCCCGATCCCCCCTACGTGCTATCGATCCTGC
TGCCACAACCCTCAGTCCAGCTGATCTTAGAATGGGAATGAACTCCTTATGCCTAAGTCAACCCA
CGAAACGAGCGTGAGGGCACTAGGCCAGCCAGAGAGGCATAATACGCAAGCCGGGGATCGACCCG
GTCCCCCTCTACGTGCTGCCAGTCCCGCTACCACAACCCTACGTCTAGCTGGGG
Found at i:18761067 original size:26 final size:26
Alignment explanation
Indices: 18761038--18761099 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
18761028 TCTTAGACTG
18761038 GGAATGAACTCCGTATGCTTAGAAAT
1 GGAATGAACTCCGTATGCTTAGAAAT
*
18761064 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGAAAT
18761090 GGAATGAACT
1 GGAATGAACT
18761100 TCGTGTGCCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGAAAT
Found at i:18761435 original size:26 final size:26
Alignment explanation
Indices: 18761399--18761450 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18761389 CTGATTCAAT
*
18761399 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
18761425 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18761451 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18761862 original size:197 final size:197
Alignment explanation
Indices: 18761561--18761920 Score: 495
Period size: 197 Copynumber: 1.8 Consensus size: 197
18761551 TACGTGCTGT
* * *** *
18761561 CGATCCTGCTGCTGGTCCTGCTGTCGCATCCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAAC
1 CGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAAC
* * * * ** *
18761626 TCCATATGCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
66 TACATATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACAAAACGAGCGTACGGG
*
18761691 CGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGTTAAGGATCGGCTCGATCCCTCCCTGTGTGCT
131 CGCTCAACCAACCGAAGAGGCAGAATGCGCAAGTTAAGGATCGGCTCGATCCCTCCCTGTGTGCT
18761756 AC
196 AC
* * *
18761758 CGATCCTGCTGCTGGTCCTGCTGCCGCAAGCCTCTGTCCAATCCGATCTTAGAGTGGGAATGAAC
1 CGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAAC
** * *
18761823 TATGTATGCTTAGACATGGAATTAACTCCATACGCCTAAGCCAACCCACAAAATGAGCGTACGGG
66 TACATATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACAAAACGAGCGTACGGG
* * * *
18761888 TGCTCAACCGACTGGAGAGGCAGAATGCGCAAG
131 CGCTCAACCAACCGAAGAGGCAGAATGCGCAAG
18761921 CTGAGGCCCA
Statistics
Matches: 138, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
197 138 1.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (197 bp):
CGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAAC
TACATATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACAAAACGAGCGTACGGG
CGCTCAACCAACCGAAGAGGCAGAATGCGCAAGTTAAGGATCGGCTCGATCCCTCCCTGTGTGCT
AC
Found at i:18762344 original size:26 final size:26
Alignment explanation
Indices: 18762308--18762360 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18762298 CCAGTCTGAT
18762308 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18762334 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18762360 C
1 C
18762361 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18762713 original size:26 final size:26
Alignment explanation
Indices: 18762675--18762727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18762665 TTGGTCTGAT
*
18762675 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
18762701 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
18762727 C
1 C
18762728 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18766600 original size:159 final size:158
Alignment explanation
Indices: 18766420--18766809 Score: 378
Period size: 159 Copynumber: 2.5 Consensus size: 158
18766410 TGATCCCCCC
* *
18766420 CTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
1 CTGCATGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * * * ** *
18766485 CCGTATGCATAAGTCAACCCATGAAATGAGA-ATGCAGGCACTGAGCTGGCCGAAGAGGCATAAT
66 CCGTATGCATAAGCCAACCAACGAAACG-GACATACAGGCACTCAGCCAGCCGAAGAGGCAGAAT
* *
18766549 GCGTAAGCCGGGGATCGACTC-GATCCCCTT
130 GCGTAAGCCGGGGATCGACCCAG-T-CCCTA
** * * * * * **
18766579 CTGTGTGCTGCTGGTCTTGCTGCCACAACCCTCGGT-TCGGT-TGGGGCTTAGACAT-GGAATGA
1 CTGCATGCTACCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCT-GATCTTAGAC-TGGGAATGA
* * * * * *
18766641 ACTTCC-TATGCCTAAGCCAACCAACGAAACGGACGTACGGGCGCTCAGCCAGCCGGAGAGGTAG
63 AC-TCCGTATGCATAAGCCAACCAACGAAACGGACATACAGGCACTCAGCCAGCCGAAGAGGCAG
*
18766705 AATGCGTAAGCCGGGGATCGGCCCAGTCCCTA
127 AATGCGTAAGCCGGGGATCGACCCAGTCCCTA
* * * *
18766737 CTGCATGCTACCGATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT
1 CTGCATGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
18766802 CCGTATGC
66 CCGTATGC
18766810 TTATACTGGA
Statistics
Matches: 181, Mismatches: 40, Indels: 21
0.75 0.17 0.09
Matches are distributed among these distances:
157 4 0.02
158 60 0.33
159 112 0.62
160 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTGCATGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
CCGTATGCATAAGCCAACCAACGAAACGGACATACAGGCACTCAGCCAGCCGAAGAGGCAGAATG
CGTAAGCCGGGGATCGACCCAGTCCCTA
Found at i:18766812 original size:26 final size:26
Alignment explanation
Indices: 18766783--18766835 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18766773 CCGATCCGAT
18766783 CTTAGACTGGGA-ATGAACTCCGTATG
1 CTTAGACT-GGACATGAACTCCGTATG
* *
18766809 CTTATACTGGACATGAACTCTGTATG
1 CTTAGACTGGACATGAACTCCGTATG
18766835 C
1 C
18766836 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGACATGAACTCCGTATG
Found at i:18767192 original size:26 final size:26
Alignment explanation
Indices: 18767163--18767215 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18767153 CCGGTCTGAT
18767163 CTTAGAC-TGGGAAAGAACTCCGTATG
1 CTTAGACAT-GGAAAGAACTCCGTATG
*
18767189 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAAAGAACTCCGTATG
18767215 C
1 C
18767216 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTCCGTATG
Found at i:18768383 original size:26 final size:26
Alignment explanation
Indices: 18768345--18768397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18768335 GGCTCAAAAT
*
18768345 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18768371 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18768397 C
1 C
18768398 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18768834 original size:26 final size:26
Alignment explanation
Indices: 18768798--18768850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18768788 CATGTTCGAT
18768798 CTTAGACT-GGGAGTAAACTCCGTATG
1 CTTAGACTGGGGA-TAAACTCCGTATG
*
18768824 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
18768850 C
1 C
18768851 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTCCGTATG
Found at i:18769481 original size:159 final size:159
Alignment explanation
Indices: 18769204--18769693 Score: 506
Period size: 159 Copynumber: 3.1 Consensus size: 159
18769194 AGACATGAAT
* * ** *
18769204 TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGTCGGTCGGAGAGAC
1 TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCACTCAGCCGACCGGAGAGGC
* * * *
18769269 AGAATGCGCAAGCCGGGGACCGACCCAAT-CCCCTCCTACGTGCTATCAATCCTGCTATCGTAAC
66 AGAATGCGCAAGCCGGGGATCGACCCGATCCCCCT-CTGCGTGCTATCAATCCTGCTATCGCAAC
18769333 CCTCGGTCCGGTCTGATCTTAGACTGGGAA
130 CCTCGGTCCGGTCTGATCTTAGACTGGGAA
* * * ** *
18769363 TGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCATTCGGGTGCTGAGCCGACCGGAGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCACTCAGCCGACCGGAGAGGC
* * * * ** ** *
18769428 ATAATGTGCAACCCAGGGATC-AGCCCGATCCCCCTCTGCGTGCTATCGGTCCTGCTGCCACAAC
66 AGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCTCTGCGTGCTATCAATCCTGCTATCGCAAC
* **
18769492 CCTCAGTCCGG-CTGGGGCTTAGACAT-GGAA
130 CCTCGGTCCGGTCT-GATCTTAGAC-TGGGAA
* * *
18769522 TGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCC-AGCCGGAGAGG
1 TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCACTCAGCCGA-CCGGAGAGG
* * ** ** * * * *
18769586 TAGAATGCGTAAGTTGGGGATCGACTTGGTCCCCC-CTGCGTGCTGTCTATCCTGCTATCGCATC
65 CAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCAATCCTGCTATCGCAAC
* *
18769650 CCTCGGTCAGGTCCGATCTTAGACTGGGAA
130 CCTCGGTCCGGTCTGATCTTAGACTGGGAA
*
18769680 TAAACTCCGTATGC
1 TGAACTCCGTATGC
18769694 TTAGACTGAG
Statistics
Matches: 263, Mismatches: 60, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 59 0.22
159 196 0.75
160 7 0.03
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCACTCAGCCGACCGGAGAGGC
AGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCAATCCTGCTATCGCAACC
CTCGGTCCGGTCTGATCTTAGACTGGGAA
Found at i:18769696 original size:26 final size:26
Alignment explanation
Indices: 18769667--18769719 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18769657 CAGGTCCGAT
18769667 CTTAGACTG-GGAATAAACTCCGTATG
1 CTTAGACTGAGG-ATAAACTCCGTATG
* *
18769693 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGGATAAACTCCGTATG
18769719 C
1 C
18769720 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATAAACTCCGTATG
Found at i:18770076 original size:26 final size:26
Alignment explanation
Indices: 18770034--18770086 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18770024 CCGGTCCAAT
* *
18770034 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18770060 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18770086 C
1 C
18770087 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18770267 original size:869 final size:869
Alignment explanation
Indices: 18768587--18770606 Score: 2826
Period size: 869 Copynumber: 2.3 Consensus size: 869
18768577 GTTCTGCTGG
*
18768587 TCCCCCTCTGTGTGCTGTCGGTCCTGCTGCCACAACCCTC-GATCCGACTGGGGCTTAGACATGG
1 TCCCCCTCTGTGTGCTATCGGTCCTGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACATGG
* *
18768651 AATGAACTCCCTATTCCTAAGCCAACCCACGAAAT-AACTGTGCGGGCACTCAGCCAGTCGGAGA
65 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGC-GTGCGGGCACTCAGCCAGTCGGAGA
**
18768715 GGCAGAATGCGTAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAA
129 GGCAGAATGCGTAAGCCAGGGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAA
* * *
18768780 CCCTCGGTCATGTTCGATCTTAGACTGGGAGTAAACTCCGTATGCTTAGACTGGGGATGAACTCC
194 CCCTCGGTCAGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCC
* * * * *
18768845 GTATGCCTAGGTCAACCCACCAAAATAGCATGCGGGCTCTCAGCAGGCCGAAGGGGCATAAGGCA
259 GTATGCCTAAGTCAACCCACGAAAAAAGCATGCGGGCGCTCAGCAGGCCGAAGGGGCATAAGACA
* * * *
18768910 TAAGCCGGGGATTAGCCCGACTCCCCTCTACGTGCTGTTGATCCCACTTCCGGTCCTGCTGCCAC
324 CAAGCCGGGGATCAACCCGACTCCCCTCTACGTGCTGTTGATCCCACTACCGGTCCTGCTGCCAC
* * *
18768975 AACCCTCGGTCCGACTGGGGCTTAGACCTGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAA
389 AACCCTCGGTCCGACTAGGGCTTAGACCTAGAATGAACTCTGTATGCCTAAGCCAACCCAGAAAA
* * * * * * *
18769040 TGAGCGTGCAGGTGCTCAACCGACCGAATAGGTAGAATGCACAAGCTGGGGATCAGCTCGATCCC
454 TGAGCGTGCAGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCAACCCGATCCC
* * * * * * *
18769105 CCCTGCATGCTGTCGATCCTACTAGTGGTCCTGCTGCCGCAACCCTCGGTCTGATCCGATGTTAG
519 CCCTGCATGCTGCCGATCCTACTAGTGGTCCTACCGCCACAACCCTCGGTCCGATCCAATCTTAG
*
18769170 ACTGGGAATTAACTCCGTATGCTTAGACATGAATTGAACTCCGTATGCCTAAGCCAACCCACGAA
584 ACTGGGAATGAACTCCGTATGCTTAGACATGAATTGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * *
18769235 ACGAGCATACGGGCACTCAGTCGGTCGGAGAGACAGAATGCGCAAGCCGGGGACCGACCCAATCC
649 ACGAGCATACGGGCACTCAGCCGCTCAGAGAGACAGAATGCGCAAGCCGAGGACCGACCCAATCC
* *
18769300 CCTCCTACGTGCTATCAATCCTGCTATCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
714 CCCCCTACGTGCTATCAATCCTGCTATCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATG
* * * *
18769365 AACTTCGTATGCCTAAGCCAACCGACGAAATGAGCATTCGGGTGCTGAGCCGACCGGAGAGGCAT
779 AACTTCGTATGCCTAAACCAACCCACAAAATGAGCATTCGGGTGCTGAGCCGACCGGAGAAGCAT
18769430 AATGTGCAACCCAGGGATCAGCCCGA
844 AATGTGCAACCCAGGGATCAGCCCGA
* *
18769456 TCCCCCTCTGCGTGCTATCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGA
1 TCCCCCTCTGTGTGCTATCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGA
*
18769521 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCGGAGAGG
66 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGTCGGAGAGG
* *** * *
18769586 TAGAATGCGTAAGTTGGGGATCGACTTGGTCCCCCCTGCGTGCTGTCTATCCTGCTATCGCATCC
131 CAGAATGCGTAAGCCAGGGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACC
* *
18769651 CTCGGTCAGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGAGGATGAACTCTGT
196 CTCGGTCAGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
* * * *
18769716 ATGCCTAAGTCAACCCATGAAAAAAG-AGTGTGGGCGCTCAGCAGGCCGGAGGGGCATAAGACGC
261 ATGCCTAAGTCAACCCACGAAAAAAGCA-TGCGGGCGCTCAGCAGGCCGAAGGGGCATAAGACAC
* *
18769780 AAGCCGGGGATCAACCCGA-TCCCCCTCTGCGTGCTGTTGATCCCACTACCGGTCTTGCTGCCAC
325 AAGCCGGGGATCAACCCGACT-CCCCTCTACGTGCTGTTGATCCCACTACCGGTCCTGCTGCCAC
18769844 AACCCTCGGTCC-AGCTAGGGCTTAGACCTAGAATGAACTCTGTATGCCTAAGCCAACCCAGAAA
389 AACCCTCGGTCCGA-CTAGGGCTTAGACCTAGAATGAACTCTGTATGCCTAAGCCAACCCAGAAA
* ** * * ** *
18769908 ATGAGCGT-CTGGGCGCTCAGTCGATCGAAGAGGCAGACT-CGTAAGCCGAGGATCAACCCGTTC
453 ATGAGCGTGC-AGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCAACCCGATC
* * *
18769971 CCCTCCTGCATGCTGCCGATCCTGCT-GCTGGTCCTACCGCTACAACCCTCGGTCCGGTCCAATC
517 CCC-CCTGCATGCTGCCGATCCTACTAG-TGGTCCTACCGCCACAACCCTCGGTCCGATCCAATC
* *
18770035 TTAGACTGGGAGTGAACTTCGTATGCTTAGACATGGAA-TGAACTCCGTATGCCTAAGCCAACCC
580 TTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GAATTGAACTCCGTATGCCTAAGCCAACCC
* * * * * *
18770099 ATGAAACGAGCTTGCGGGCACTCAGCCGACT-AGAGAGACAGAATGTGCAAGTCGAGGATCGACC
644 ACGAAACGAGCATACGGGCACTCAGCCG-CTCAGAGAGACAGAATGCGCAAGCCGAGGACCGACC
* * *
18770163 CAATCCCCCCCTGCGTGCTATCAATCTTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTG
708 CAATCCCCCCCTACGTGCTATCAATCCTGCTATCGTAACCCTCGGTCCGGTCTGATCTTAGACTG
* *
18770228 GAAATGAACTTCGTATGCCTAAACCAACCCACAAAATGAGCGTTCGGGTGCTGAGCCGATCGGAG
773 GAAATGAACTTCGTATGCCTAAACCAACCCACAAAATGAGCATTCGGGTGCTGAGCCGACCGGAG
* * *
18770293 AAGCATAATGTGCAAGCCGGGGATCAGCCCGG
838 AAGCATAATGTGCAACCCAGGGATCAGCCCGA
* *
18770325 TCTCCCTCTGTGTGCTATCGGT-CTCGCTGCCACAACCCTCAGTTCGACTGGGGCTTAGACATGG
1 TCCCCCTCTGTGTGCTATCGGTCCT-GCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGG
* * * * * * * *
18770389 AATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCGCTCAGCCGGTTGAAGAG
65 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGTCGGAGAG
* * * ** * *
18770454 GCAGAATGCGCAAGCCAGGGATCG-GTCTGATCTACCCTGCATGCTGTCGATCCTACTGCAT--C
130 GCAGAATGCGTAAGCCAGGGATCGACT-TGGTCCCCCCTGCGTGCTGTCGATCCTGCT--ATCGC
* * * *
18770516 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
192 AACCCTCGGTCAGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACT
18770581 CCGTATGCCTAAGTCAACCCACGAAA
257 CCGTATGCCTAAGTCAACCCACGAAA
18770607 CGAGCGTGTA
Statistics
Matches: 1015, Mismatches: 122, Indels: 28
0.87 0.10 0.02
Matches are distributed among these distances:
868 28 0.03
869 978 0.96
870 7 0.01
871 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (869 bp):
TCCCCCTCTGTGTGCTATCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGTCGGAGAGG
CAGAATGCGTAAGCCAGGGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACC
CTCGGTCAGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
ATGCCTAAGTCAACCCACGAAAAAAGCATGCGGGCGCTCAGCAGGCCGAAGGGGCATAAGACACA
AGCCGGGGATCAACCCGACTCCCCTCTACGTGCTGTTGATCCCACTACCGGTCCTGCTGCCACAA
CCCTCGGTCCGACTAGGGCTTAGACCTAGAATGAACTCTGTATGCCTAAGCCAACCCAGAAAATG
AGCGTGCAGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCAACCCGATCCCCC
CTGCATGCTGCCGATCCTACTAGTGGTCCTACCGCCACAACCCTCGGTCCGATCCAATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACATGAATTGAACTCCGTATGCCTAAGCCAACCCACGAAAC
GAGCATACGGGCACTCAGCCGCTCAGAGAGACAGAATGCGCAAGCCGAGGACCGACCCAATCCCC
CCCTACGTGCTATCAATCCTGCTATCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAA
CTTCGTATGCCTAAACCAACCCACAAAATGAGCATTCGGGTGCTGAGCCGACCGGAGAAGCATAA
TGTGCAACCCAGGGATCAGCCCGA
Found at i:18770444 original size:159 final size:159
Alignment explanation
Indices: 18770059--18770477 Score: 398
Period size: 159 Copynumber: 2.6 Consensus size: 159
18770049 AACTTCGTAT
* * * *
18770059 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
18770124 CCGA-C-TAGAGAGACAGAATGTGCAAGTCGAGGATCGACCCAATCCCCCCCTGCGTGCTATCAA
66 CCGATCGAAGA-AG-CAGAATGTGCAAGCCGGGGATCGACCCAATCCCCCCCTGCGTGCTATCAA
* * ** * *
18770187 TCTTGCTGTCGTAACCCTCGGTCCGGTCTGA
129 TCTCGCTGCCACAACCCTCAGTCCGGACTGA
* * * * * * * *
18770218 TCTTAGAC-TGGAAATGAACTTCGTATGCCTAAACCAACCCACAAAATGAGCGTTCGGGTGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * ** * * * **
18770282 GCCGATCGGAGAAGCATAATGTGCAAGCCGGGGATC-AGCCCGGTCTCCCTCTGTGTGCTATCGG
65 GCCGATCGAAGAAGCAGAATGTGCAAGCCGGGGATCGA-CCCAATCCCCCCCTGCGTGCTATCAA
* *
18770346 TCTCGCTGCCACAACCCTCAGTTC-GACTGGG
129 TCTCGCTGCCACAACCCTCAGTCCGGACT-GA
* * *
18770377 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
18770442 CCGGTTGAAGAGGCAGAATGCGCAAGCCAGGGATCG
66 CCGATCGAAGAAGCAGAATGTGCAAGCCGGGGATCG
18770478 GTCTGATCTA
Statistics
Matches: 205, Mismatches: 48, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
158 7 0.03
159 189 0.92
160 6 0.03
161 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCGAAGAAGCAGAATGTGCAAGCCGGGGATCGACCCAATCCCCCCCTGCGTGCTATCAATC
TCGCTGCCACAACCCTCAGTCCGGACTGA
Found at i:18770565 original size:26 final size:26
Alignment explanation
Indices: 18770536--18770588 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18770526 CCGATCCGAT
18770536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18770562 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18770588 C
1 C
18770589 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18771401 original size:26 final size:26
Alignment explanation
Indices: 18771372--18771424 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18771362 CCGATCCAAT
*
18771372 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18771398 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18771424 C
1 C
18771425 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18771757 original size:26 final size:26
Alignment explanation
Indices: 18771719--18771771 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18771709 TCTGGTCGAA
18771719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18771745 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18771771 C
1 C
18771772 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18772013 original size:353 final size:353
Alignment explanation
Indices: 18771340--18772367 Score: 1036
Period size: 353 Copynumber: 2.9 Consensus size: 353
18771330 ATGCTGTTGA
* * *
18771340 TCCTGCTGCCACAACCCTCGATCCGATCC-AATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
1 TCCTCCTGCCGCAACCCTCGATCCGGTCCGAA-CTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * ** * * * * * *
18771404 C-TGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAG-T
65 CAT-GGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGTGTACGGGCGCTCA-ACAGAC
* * * * * * * **
18771467 CGAAGAGGCATAATGCATAAGCCGGGGATC-AGCCTAGT--CCCT-C-T-CTGTCGATCCTGCTA
128 CGAAGAGGCAGAATGCACAAGCCGGGCACCGACCCGA-TCCCCCTACGTGCTATCGATCCCACTA
** * * * * ** *
18771526 CCACAACCTTC-GGTCCAACTGGGGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCC
192 CCGTAACCCTCAGTTCCATC-CGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCC
* * * * * * *
18771589 ATGAAACGAGCGTGCGGGTGCTCAACCGGCCGAAGAGGCACAATGCGCAAGCCGGGGATCGACCC
255 ACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCACAATACGTAAGTCGGGGATCGACCC
*
18771654 GGT-CCCCCT-TACATGCTGTAGATCCTGCTACTGG
320 GGTCCCCCCTGTAC--GCTGTAGATCCTGCTAATGG
* *
18771688 TCCTGCTGCCGCAACCCTC-AGTCTGGT-CGAACTTAGACTGGGAATGAACTCCGTATGCTTAGA
1 TCCTCCTGCCGCAACCCTCGA-TCCGGTCCGAACTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
18771751 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCGCTCAACTAG-CC
65 CATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGTGTACGGGCGCTCAAC-AGACC
* * *
18771815 -AGAGAGGCAGAATGCACAAGCCGGGCACCGACCC-AGTCCCCCCTGCGTGCTGTCGATCCTACT
129 GA-AGAGGCAGAATGCACAAGCCGGGCACCGACCCGA-T-CCCCCTACGTGCTATCGATCCCACT
** * * * *
18771878 GTCGTGACCCTCAG-TCCATTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTGAGTCAACCC
191 ACCGTAACCCTCAGTTCCA-TCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
* * * **
18771942 ACGAAACGAGTGTGCGGGCGCTGAGCCGGCCGAAGAGGTAGAATACGTAAGTCGGGGATCGACTT
255 ACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCACAATACGTAAGTCGGGGATCGACCC
* *
18772007 GGTCCCCCCTGTGCGCTGTCGATCCTGCTAATGG
320 GGTCCCCCCTGTACGCTGTAGATCCTGCTAATGG
* *
18772041 TCCTCCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTCCTGCCGCAACCCTCGATCCGGTCCGAACTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
18772106 ATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGACCGA
66 ATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGTGTACGGGCGCTCAACAGACCGA
* * * *
18772171 AGAGGCAGAATGCATAAGCCGGGGACCGGCCCGATCCCCCTACGTGCTATCGATCCCGCTACCGT
131 AGAGGCAGAATGCACAAGCCGGGCACCGACCCGATCCCCCTACGTGCTATCGATCCCACTACCGT
** * * *
18772236 AACCCTTGGTTCGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAA
196 AACCCTCAGTTCCATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
* * * * * *
18772301 TGAGCGTGCAGGCGTTGAGCAC-GTCGGAGAGGCATAATACGTAAGTCGGGGATCGA-CCGGATC
261 CGAGCGTGCGGGCGCTGAGC-CGGCCGAAGAGGCACAATACGTAAGTCGGGGATCGACCCGG-TC
18772364 CCCC
324 CCCC
18772368 TTTGCGTGCT
Statistics
Matches: 567, Mismatches: 88, Indels: 45
0.81 0.13 0.06
Matches are distributed among these distances:
346 2 0.00
347 109 0.19
348 28 0.05
350 4 0.01
351 1 0.00
352 4 0.01
353 282 0.50
354 133 0.23
355 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (353 bp):
TCCTCCTGCCGCAACCCTCGATCCGGTCCGAACTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGTGTACGGGCGCTCAACAGACCGA
AGAGGCAGAATGCACAAGCCGGGCACCGACCCGATCCCCCTACGTGCTATCGATCCCACTACCGT
AACCCTCAGTTCCATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCACAATACGTAAGTCGGGGATCGACCCGGTCCC
CCCTGTACGCTGTAGATCCTGCTAATGG
Found at i:18772102 original size:26 final size:26
Alignment explanation
Indices: 18772073--18772125 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18772063 CCGGTCCGAT
18772073 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18772099 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18772125 C
1 C
18772126 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18772609 original size:26 final size:26
Alignment explanation
Indices: 18772573--18772625 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18772563 CTGGTCTGAT
*
18772573 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18772599 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18772625 C
1 C
18772626 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18773622 original size:157 final size:156
Alignment explanation
Indices: 18773295--18773622 Score: 324
Period size: 157 Copynumber: 2.1 Consensus size: 156
18773285 TGGCTCAAAC
** *
18773295 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGATGGGCGCTCAGTCG
1 TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAAATGAGATGGGCGCTCAGTCG
* * * * *
18773360 ATCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCA
66 ACCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTACATGCTGCCGATCCCA
* ** * *
18773425 CCGCCATAACCCTTGATTTGACTGGG
131 CCGCCACAACCCTTGATCCGACTCGA
*
18773451 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA-G-GCATGCAGGCGCT
1 TCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCA-GAAA-ATGAG-ATG--GGCGCT
* * * * *
18773513 CAGTCGACCGGAGAGGCAAAATG-GTAAGCCGGGGATCGGCTCGGT-CCCCTCTGCATGCTGCCG
60 CAGTCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTACATGCTGCCG
** * ** * **
18773576 ATCCTGCTGCTGCAACCCTTGGTCCGGTTCGA
125 ATCCCACCGCCACAACCCTTGATCCGACTCGA
18773608 TCTTAGACTGGGAAT
1 TCTTAGACTGGGAAT
18773623 TACCTCCGTA
Statistics
Matches: 137, Mismatches: 28, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
156 38 0.28
157 53 0.39
158 20 0.15
159 26 0.19
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAAATGAGATGGGCGCTCAGTCG
ACCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTACATGCTGCCGATCCCA
CCGCCACAACCCTTGATCCGACTCGA
Found at i:18773638 original size:26 final size:26
Alignment explanation
Indices: 18773609--18773661 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18773599 CCGGTTCGAT
* *
18773609 CTTAGACTGGGAATTACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18773635 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18773661 C
1 C
18773662 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18773841 original size:26 final size:26
Alignment explanation
Indices: 18773803--18773855 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18773793 TCCGATAGAT
* *
18773803 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18773829 CTTAGAC-ATGGAATAAACTCCGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
18773855 C
1 C
18773856 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:18774223 original size:158 final size:157
Alignment explanation
Indices: 18773987--18774273 Score: 341
Period size: 158 Copynumber: 1.8 Consensus size: 157
18773977 CCGGTCCGAT
* * * *
18773987 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCAGACGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGACGCTCAGC
* * ** *
18774052 CGACCGGAAAGGCATAATACGCAAGCCGAGGATC-GACCTGGTCCCCCTCTGTGTGCTGTCGATC
66 CGACCGGAAAGGCAAAATACGCAAGCCGAGGATCAG-CCCGGT-CCCCTCTACGTGCTGCCGATC
18774116 CCGCTGCCACAACCTCGGTCTAGCTAGGC
129 CCGCTGCCACAACCTCGGTCTAGCTAGGC
* * **
18774145 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCA-AGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGA-CGCTCA
* * *
18774208 GCC-AGTC-GAAGAGGCAAAATATGTAAGCCGAGGATCAGCCCGGTCCCCTCTACGTGCTGCCGA
64 GCCGA-CCGGAA-AGGCAAAATACGCAAGCCGAGGATCAGCCCGGTCCCCTCTACGTGCTGCCGA
18774271 TCC
127 TCC
18774274 TGCTACCGTA
Statistics
Matches: 108, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
157 24 0.22
158 82 0.76
159 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGACGCTCAGC
CGACCGGAAAGGCAAAATACGCAAGCCGAGGATCAGCCCGGTCCCCTCTACGTGCTGCCGATCCC
GCTGCCACAACCTCGGTCTAGCTAGGC
Found at i:18776290 original size:26 final size:26
Alignment explanation
Indices: 18776248--18776301 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
18776238 CCAGTTCAAT
18776248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18776274 CTTAGACTAGGG-TTGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
18776300 CT
1 CT
18776302 GAAGTCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18776486 original size:26 final size:26
Alignment explanation
Indices: 18776457--18776509 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18776447 CCGGTCCGAT
18776457 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18776483 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18776509 C
1 C
18776510 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18776754 original size:195 final size:195
Alignment explanation
Indices: 18776387--18776760 Score: 525
Period size: 195 Copynumber: 1.9 Consensus size: 195
18776377 TCGGGGATCA
* * * * *
18776387 ACCCGGTCCCCCCTACGTGCTACCGATCCTGCTGCTGGTCTTACTGCTATAACCTTCGGTCCGGT
1 ACCCGGTCCCCACTACATGCTACCGATCCTGCTGCTGGTCTTACTGCCACAACCTTCGGTCCGAT
18776452 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
66 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * ** **
18776517 AAGCCACGAAACGAGCGTGCGGGCACTCAGCCGATTGGAGAGGTAGAATTCGCAAGCGAGGACTG
131 AACCCACGAAACGAGCGTACAAGCACTCAGCCGACCGGAGAGGTAGAATTCGCAAGCGAGGACTG
* * * * *
18776582 ACCCGGTCCCCACTGCATGCTGCCGGTCCTGCTGCTGGTCTTGCTGCCGCAACCCTT-GGTCCGA
1 ACCCGGTCCCCACTACATGCTACCGATCCTGCTGCTGGTCTTACTGCCACAA-CCTTCGGTCCGA
* * *
18776646 TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
65 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * *
18776711 CAACCCATGAAACGAGCGTACAAGCGCTCAGTCGGCCGGAGAGGTAGAAT
130 CAACCCACGAAACGAGCGTACAAGCACTCAGCCGACCGGAGAGGTAGAAT
18776761 GCACAAGCCG
Statistics
Matches: 155, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
195 151 0.97
196 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (195 bp):
ACCCGGTCCCCACTACATGCTACCGATCCTGCTGCTGGTCTTACTGCCACAACCTTCGGTCCGAT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACGAGCGTACAAGCACTCAGCCGACCGGAGAGGTAGAATTCGCAAGCGAGGACTG
Found at i:18776944 original size:158 final size:159
Alignment explanation
Indices: 18776678--18776964 Score: 375
Period size: 158 Copynumber: 1.8 Consensus size: 159
18776668 ACTCCGTATG
** * *
18776678 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACAAGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAAGCGCTCAGC
* * ** *
18776743 CGGCCGGAGAGGTAGAATGCACAAGCCGGGGTTCGGCTCGGT-CCCCTCTGTGTGCTGTCGATCT
66 CGACCGGAGAGGTAGAATGCACAAGCCAGGGAACGACTCGGTCCCCCTCTGTGTGCTGTCGATCT
18776807 GGCTACCGCAACCCTCGGTCCAATCCAAT
131 GGCTACCGCAACCCTCGGTCCAATCCAAT
* * ** *
18776836 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAAGCGCTCAG
* *
18776900 CCGACCGGAGAGG-CGTAATGGC-CAAGCCAGGGAACGACTTGGTCCCCCTCTGTGTGCTGTCGA
65 CCGACCGGAGAGGTAG-AAT-GCACAAGCCAGGGAACGACTCGGTCCCCCTCTGTGTGCTGTCGA
18776963 TC
128 TC
18776965 CCGCTGCCAC
Statistics
Matches: 109, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
157 2 0.02
158 84 0.77
159 23 0.21
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAAGCGCTCAGC
CGACCGGAGAGGTAGAATGCACAAGCCAGGGAACGACTCGGTCCCCCTCTGTGTGCTGTCGATCT
GGCTACCGCAACCCTCGGTCCAATCCAAT
Found at i:18777570 original size:26 final size:26
Alignment explanation
Indices: 18777532--18777584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18777522 CCGGTCTGAT
18777532 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18777558 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18777584 C
1 C
18777585 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18778620 original size:26 final size:26
Alignment explanation
Indices: 18778582--18778634 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18778572 GGCTCAAACT
18778582 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
18778608 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
18778634 C
1 C
18778635 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18779517 original size:26 final size:26
Alignment explanation
Indices: 18779488--18779540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18779478 CCGGTCTGAT
18779488 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18779514 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18779540 C
1 C
18779541 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18780036 original size:26 final size:26
Alignment explanation
Indices: 18779990--18780042 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18779980 CTGGTCCGAT
** *
18779990 CTTAGACTGGGAATGTGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18780016 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18780042 C
1 C
18780043 CTAAGTCAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18780408 original size:26 final size:26
Alignment explanation
Indices: 18780369--18780422 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
18780359 TCCGATCTGA
18780369 GCTTAGACTGGGAATGAACTCCATAT
1 GCTTAGACTGGGAATGAACTCCATAT
*
18780395 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCATAT
18780421 GC
1 GC
18780423 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCATAT
Found at i:18785254 original size:26 final size:26
Alignment explanation
Indices: 18785210--18785262 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18785200 CTGGTTTGAT
18785210 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18785236 CTTAGACT-GGAGATTAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
18785262 C
1 C
18785263 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18785614 original size:26 final size:26
Alignment explanation
Indices: 18785585--18785637 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18785575 TCTATCCGAT
* *
18785585 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
18785611 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
18785637 C
1 C
18785638 CTAAGCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:18786196 original size:13 final size:13
Alignment explanation
Indices: 18786178--18786203 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18786168 GGCGCTCAGT
18786178 CGATCGGAGAGGC
1 CGATCGGAGAGGC
18786191 CGATCGGAGAGGC
1 CGATCGGAGAGGC
18786204 ATAATACGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGATCGGAGAGGC
Found at i:18786821 original size:26 final size:26
Alignment explanation
Indices: 18786783--18786835 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18786773 GGCTCAAACT
*
18786783 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18786809 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
18786835 C
1 C
18786836 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18787155 original size:26 final size:26
Alignment explanation
Indices: 18787126--18787178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18787116 CCGATCTGAT
*
18787126 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18787152 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18787178 C
1 C
18787179 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18787900 original size:158 final size:157
Alignment explanation
Indices: 18787370--18787935 Score: 464
Period size: 159 Copynumber: 3.6 Consensus size: 157
18787360 ACTTAGGCAT
* * * * *
18787370 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAG
1 GGAATGAACTTCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGACGCTCAGCCGACCAGAG
* ** * * * ** * *
18787435 AGGTAGAATGCGTAAGCTGGGGATC-GACCCGATCCCCCCCTTTGTGCTATCGATCATGCTGCCG
66 AGGCAGAATGCACAAGCCGGGGATCAG-CTCGGT-CCCCCCTACGTGCTATCGATCCTACTGCCG
* * *
18787499 CAACCCTTAGTTCGGTCTGATCTTAGACTG
129 CAACCC-TCGATCGGTTTGATCTTAGACTG
* * * * * *
18787529 GGAATAAACTTCCTATGCCTAAGTCAACCCACGAAATGAGCGTGCTGG-CGCTGAGCC-AGTCGG
1 GGAATGAACTTCCTATGCCTAAGCCAACCCACAAAATGAGCGTGC-GGACGCTCAGCCGA-CCAG
* * * * * * *
18787592 AGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGTCCCACTCTGCTTGCTATCGGTCCCACTGCC
64 AGAGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCCC-CCCTACGTGCTATCGATCCTACTGCC
** * * * * ** *
18787657 ATAACCCTCGGTCCAGCTGGGGCTTGGACAT-
128 GCAACCCTCGAT-CGGTTTGATCTTAGAC-TG
** * * * *
18787688 GGAATTTACTCCCTATGCCTAAGCCAACCCATGAAACA-G-GTGTGC-GAGCGCTCAGCCGGCCA
1 GGAATGAACTTCCTATGCCTAAGCCAACCCA-CAAA-ATGAGCGTGCGGA-CGCTCAGCCGACCA
** *
18787750 GAGAGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCCCCCCTACGTGCTGCCGATCCTACTACC
63 GAGAGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCCCCCCTACGTGCTATCGATCCTACTGCC
18787815 GCAACCCTCGATCTGGTTTGATCTTAGACTG
128 GCAACCCTCGATC-GGTTTGATCTTAGACTG
* * *
18787846 GGAATGAAC-TCTGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGACGCTCAGCCGACCAGA
1 GGAATGAACTTC-CTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGACGCTCAGCCGACCAGA
* * *
18787910 GAGGCAGGATGCACAAGTCAGGGATC
65 GAGGCAGAATGCACAAGCCGGGGATC
18787936 GAACGGGTGG
Statistics
Matches: 319, Mismatches: 71, Indels: 35
0.75 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 109 0.34
159 193 0.61
160 7 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTTCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGACGCTCAGCCGACCAGAG
AGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCCCCCCTACGTGCTATCGATCCTACTGCCGCA
ACCCTCGATCGGTTTGATCTTAGACTG
Found at i:18789632 original size:157 final size:158
Alignment explanation
Indices: 18789372--18789719 Score: 432
Period size: 157 Copynumber: 2.2 Consensus size: 158
18789362 CTTGGTCCAG
* * *
18789372 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACAAAACGAGCATACGGGCG
* *
18789437 CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCC-CCTGCGTGCTATC
66 CTCAGCCGACCGGAGAGGCAGAATGCACAAGCTAGGGATCGGCCCGGTCCCTCCTGCGTGCTATC
* * *
18789501 GATCCTGCTGCTACAACCCACGGTCTGA
131 GATCCTGCTACCACAACCCACGGGCTGA
* * * * * *
18789529 TCTGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACTTACGAAATGAGCGTACGGGTG
1 TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACAAAACGAGCATACGGGCG
* * ** * * * *
18789594 CTGAGTCGGTCGGAGAGGCAGAATGCACAAGCTAGGGATCGGTCTGGTCCCTCTTGCGTGCTGTC
66 CTCAGCCGACCGGAGAGGCAGAATGCACAAGCTAGGGATCGGCCCGGTCCCTCCTGCGTGCTATC
* * *
18789659 GATCCTGCTACCGCAACCCTCGGGCTGG
131 GATCCTGCTACCACAACCCACGGGCTGA
18789687 T-TCGATCTTAGACTGGGAATGAAC-TCTGTATGC
1 TCT-GATCTTAGACTGGGAATGAACTTC-GTATGC
18789720 TTAGACTGGG
Statistics
Matches: 162, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
157 102 0.63
158 60 0.37
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (158 bp):
TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACAAAACGAGCATACGGGCG
CTCAGCCGACCGGAGAGGCAGAATGCACAAGCTAGGGATCGGCCCGGTCCCTCCTGCGTGCTATC
GATCCTGCTACCACAACCCACGGGCTGA
Found at i:18789729 original size:26 final size:26
Alignment explanation
Indices: 18789693--18789745 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18789683 CTGGTTCGAT
18789693 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
18789719 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18789745 C
1 C
18789746 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18790795 original size:159 final size:159
Alignment explanation
Indices: 18790450--18790881 Score: 519
Period size: 159 Copynumber: 2.7 Consensus size: 159
18790440 AACTCTGTAT
*
18790450 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * ** *
18790515 CCGGCTGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGGTCCCCC-CAGCGTGCTGTCAATC
66 CCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCAGCATGCTGTCAATC
* * *
18790579 CTTCTGCCACAACCCTCGATTCTGTCCGA
131 CTGCTGCCACAACCCTCGAGTCTGACCGA
* * * * * * ** *
18790608 TCTTATAC-TGGGAATGAAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTG
1 GCTTACACAT-GGAATG-AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * **
18790672 AGCCGACCGAAGAGGCATAATGCGTAAGCCAAGGATCGACCCGGTCCCCCTCTGCATGCTGTCGG
64 AGCCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCAGCATGCTGTCAA
* *
18790737 TCCTGCTGCCACAACCCTCG-GTCTGACTGGG
129 TCCTGCTGCCACAACCCTCGAGTCTGAC-CGA
*
18790768 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
18790833 TCGGCCGAAGAGGCAGAATCCGTAAGCCGGGGATCGGCCCGATCCCCCT
66 CCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCT
18790882 ACGTGCTACT
Statistics
Matches: 225, Mismatches: 44, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 12 0.05
159 169 0.75
160 42 0.19
161 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCAGCATGCTGTCAATC
CTGCTGCCACAACCCTCGAGTCTGACCGA
Found at i:18790955 original size:26 final size:26
Alignment explanation
Indices: 18790926--18790978 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18790916 CCGGTTCAAT
*
18790926 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
18790952 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18790978 C
1 C
18790979 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18791639 original size:26 final size:26
Alignment explanation
Indices: 18791598--18791650 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18791588 CTGTTCTGAT
18791598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18791624 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
18791650 C
1 C
18791651 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18792293 original size:26 final size:26
Alignment explanation
Indices: 18792264--18792315 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18792254 TCGGTCTGAT
*
18792264 CTTAGACTGAG-AATGAACTTCGTATG
1 CTTAGACT-AGTAATGAACTCCGTATG
*
18792290 CTTAGACTAGTGATGAACTCCGTATG
1 CTTAGACTAGTAATGAACTCCGTATG
18792316 TCGAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGTAATGAACTCCGTATG
Found at i:18792416 original size:185 final size:184
Alignment explanation
Indices: 18792104--18792672 Score: 459
Period size: 185 Copynumber: 3.0 Consensus size: 184
18792094 TCCGACTGGG
* * * * * * **
18792104 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCATACGGGTGCTCA-
* *** * * * ** * * *
18792169 TC-GGTGGGAGAGGCAGAATGCGCAAGTCAAGGA-TCGGCCCAGTTCCCCTCTGCGTGCTGTCGA
65 ACAGGCCAGAGAGGCAGAATGCACAAGCCGAGGACTC-AACCTGTCCCCCTCT-TGTGCTGTCGA
* * * * *
18792232 TCTTGCTGCCATAACCCTCGTTTCGGTCTGATCTTAGACTGAGAATGAACTTCGTAT
128 TCTTGCTGCCATAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * **
18792289 GCTTAGAC-TAGTG-ATGAACTCCGTATGTCGAAGTCAACCCATGAAACGAGCATGTGGGTGCTC
1 GCTTAGACAT-G-GAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCATACGGGTGCTC
* *
18792352 AACAGGCCAGAGAGGCATAATGCGCAAGCCG-GGTA-TCAACCTGGTCCCCCTCTATGTGCTGTC
64 AACAGGCCAGAGAGGCAGAATGCACAAGCCGAGG-ACTCAACCT-GTCCCCCTCT-TGTGCTGTC
*
18792415 GATCCTGCTGCTGGTCCTGCTATCGTAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACT
126 GAT-CT--TGCT-G--C--C-A---TAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACT
*
18792480 CCATAT
179 CCGTAT
* * * *
18792486 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCATACGGGTGCTCAA
* * * * *
18792551 CCGGTCAGAGAGGCAGAATGCACAAGCCGAGGACTGACCCTGTCCACC-CTTGCATGCTGTCGAT
66 CAGGCCAGAGAGGCAGAATGCACAAGCCGAGGACTCAACCTGTCCCCCTCTTG--TGCTGTCGAT
* ** * *
18792615 CCTGCTGCCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
129 CTTGCTGCCATAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
18792671 GC
1 GC
18792673 CTAAGTCAAC
Statistics
Matches: 309, Mismatches: 52, Indels: 46
0.76 0.13 0.11
Matches are distributed among these distances:
184 6 0.02
185 138 0.45
186 3 0.01
188 4 0.01
189 2 0.01
191 2 0.01
193 2 0.01
194 5 0.02
195 2 0.01
196 4 0.01
197 133 0.43
198 8 0.03
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCATACGGGTGCTCAA
CAGGCCAGAGAGGCAGAATGCACAAGCCGAGGACTCAACCTGTCCCCCTCTTGTGCTGTCGATCT
TGCTGCCATAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:18792490 original size:26 final size:26
Alignment explanation
Indices: 18792461--18792513 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18792451 CCAATCTGAT
18792461 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
18792487 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
18792513 C
1 C
18792514 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:18792611 original size:197 final size:197
Alignment explanation
Indices: 18792258--18792622 Score: 463
Period size: 197 Copynumber: 1.9 Consensus size: 197
18792248 CTCGTTTCGG
* * * *
18792258 TCTGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAGTGATGAACTCCGTATGTCGAAGT
1 TCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTAGTGATGAACTCCGTATGCCGAAGC
* ** * *
18792323 CAACCCATGAAACGAGCATGTGGGTGCTCAACAGGCCAGAGAGGCATAATGCGCAAGCCGGGTAT
66 CAACCCACGAAACGAGCATACGGGTGCTCAACAGGCCAGAGAGGCAGAATGCACAAGCCGGGTAT
*
18792388 CAACCTGGTCCCCCTCTATGTGCTGTCGATCCTGCTGCTGGTCCTGCTATCGTAACCCTCGGTCC
131 CAACCTGGTCCACCTCTATGTGCTGTCGATCCTGCTGCTGGTCCTGCTATCGTAACCCTCGGTCC
18792453 AA
196 AA
* *
18792455 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-A-TGGAATGAACTCCGTATGCCTAA
1 TCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTAGT-G-ATGAACTCCGTATGCCGAA
* * * * *
18792518 GCCAACCCACGAAACGAGCGTACGGGTGCTGAGCCGGTCAGAGAGGCAGAATGCACAAGCCGAGG
64 GCCAACCCACGAAACGAGCATACGGGTGCTCAACAGGCCAGAGAGGCAGAATGCACAAGCCG-GG
* *
18792583 -ACTGACCCT-GTCCACC-CT-TGCATGCTGTCGATCCTGCTGC
128 TA-TCAACCTGGTCCACCTCTATG--TGCTGTCGATCCTGCTGC
18792623 CGCAACCCTT
Statistics
Matches: 143, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
195 3 0.02
196 4 0.03
197 129 0.90
198 7 0.05
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (197 bp):
TCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTAGTGATGAACTCCGTATGCCGAAGC
CAACCCACGAAACGAGCATACGGGTGCTCAACAGGCCAGAGAGGCAGAATGCACAAGCCGGGTAT
CAACCTGGTCCACCTCTATGTGCTGTCGATCCTGCTGCTGGTCCTGCTATCGTAACCCTCGGTCC
AA
Found at i:18792781 original size:159 final size:156
Alignment explanation
Indices: 18792487--18793008 Score: 475
Period size: 159 Copynumber: 3.3 Consensus size: 156
18792477 ACTCCATATG
*
18792487 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC-GTACGGGTGCTGAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTGTA-GGCT-CTGAG
** * *
18792551 CCGGTC-AGAGAGGCAGAATGCACAAGCCGAGGA-CTGACCCTGTCCACCCT-TGCATGCTGTCG
64 CCGACCGA-AGAGGCAGAATGCGCAAGCCG-GGATC-GACCCAGTCC-CCCTCTGCATGCTGTCG
*
18792613 ATCCTGCTGCCGCAACCCTTGGTCCAGTCCGAT
125 ATCCTGCTGCCGCAACCCTCGGTCC-GTCCGAT
* *
18792646 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTAGGCTCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC-TGTAGGCTCTGAG
* * * *
18792710 CCGACCGAAGAGCCATAATGCGCAAGCCGGGTATCGACCCAATCCCCCTCTGCTTGCTGTC-AGT
64 CCGACCGAAGAGGCAGAATGCGCAAGCCGGG-ATCGACCCAGTCCCCCTCTGCATGCTGTCGA-T
* * * * * **
18792774 CCCGCTGCCACAACTCTCGGTCCGGCTGGGG
127 CCTGCTGCCGCAACCCTCGGTCCGTC-CGAT
* * * * ** * * *
18792805 CTTAGCCATGGAATGAACTCCCTATGCCTAAGCCACCCCACGAAACGGGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC-TGTAGGCTCTGAGC
* * * * *
18792870 CGACCGAAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
65 CGACCGAAGAGGCAGAATGCGCAAGC-CGGGATCGACCCAGTCCCCCTCTGCATGCTGTCGATCC
* * * *
18792934 TACTACTGCAACCCTCGGTCCTGTCTGAT
129 TGCTGCCGCAACCCTCGGTCC-GTCCGAT
* ** *
18792963 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAAC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
18793009 AAGCGTGCGG
Statistics
Matches: 293, Mismatches: 56, Indels: 29
0.78 0.15 0.08
Matches are distributed among these distances:
157 1 0.00
158 77 0.26
159 203 0.69
160 9 0.03
161 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTGTAGGCTCTGAGCC
GACCGAAGAGGCAGAATGCGCAAGCCGGGATCGACCCAGTCCCCCTCTGCATGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGTCCGAT
Found at i:18793564 original size:26 final size:26
Alignment explanation
Indices: 18793513--18793565 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18793503 GGCTCAAACT
**
18793513 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18793539 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18793565 C
1 C
18793566 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18793878 original size:158 final size:159
Alignment explanation
Indices: 18793539--18793879 Score: 382
Period size: 159 Copynumber: 2.2 Consensus size: 159
18793529 ACTCTGTATG
* * **
18793539 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCGCTCATT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
18793604 TGGCCGAAGAGGCAGAATGCACAAGCCGGGGATTGACTTGGTCCCCCTCTGCGTGCTACCGGTCC
66 CGGCCGAAGAGGCAGAATGCACAAGCCGAGGATTCACCCGATCCCCCTCTGCGTGCTACCGATCC
* *
18793669 CGCTGCCACAACCCTCGGTCCGGCTAGGT
131 CGCTGCCACAACCCTCGGTCCGACTAGAT
* * * * *
18793698 CTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGGAACGGGCGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
18793763 CGGTCGGAGAGGCAGAATGCGTAAGCCGAGGA-TCACCCCGATCCTCCT-TGCGTGTTACCGATC
66 CGGCCGAAGAGGCAGAATGCACAAGCCGAGGATTCA-CCCGATCCCCCTCTGCGTGCTACCGATC
* * * * *
18793826 CTGCTGTCGCAACCCTCGGTCCGATTCGAT
130 CCGCTGCCACAACCCTCGGTCCGACTAGAT
18793856 CTTAGAC-TGGGAATGAACTCCGTA
1 CTTAGACAT-GGAATGAACTCCGTA
18793880 CGCTTAGACT
Statistics
Matches: 150, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 59 0.39
159 90 0.60
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCACAAGCCGAGGATTCACCCGATCCCCCTCTGCGTGCTACCGATCC
CGCTGCCACAACCCTCGGTCCGACTAGAT
Found at i:18794389 original size:158 final size:158
Alignment explanation
Indices: 18794091--18794433 Score: 386
Period size: 158 Copynumber: 2.2 Consensus size: 158
18794081 ACTCTGTATG
** * * *
18794091 CTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCTAGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTAAGC
* * * * * *
18794156 CGACCGGAGAGGCAAAATGCATAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCTT
66 CGACCGAAGAGGCAAAATGCACAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCT
** *
18794221 ACTATTGTAACCCTCGATCCGGTCTGAT
131 ACTACCGTAACCCTCGATCCGGTCCGAT
* * *
18794249 CTTAGACTGAGG-ATGAACTCCGTATGCCTAAGTCAACCCATGACACGAGCGTGCGGGCGCTCAA
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCT-AA
** * * * * * *
18794313 -CCGGTCGAAGAGGTAGAATGCGCAAG-CTGGGGATCGACCTGGTCCCCCCTACGTGTTGCCGGT
64 GCCGACCGAAGAGGCAAAATGCACAAGTC-GGGGATCGACCCGGTCCCCCCTACGTGCTGCCGAT
* * *
18794376 CCTACTGCCGTAACCCTCGGTCCGGTCCGCT
128 CCTACTACCGTAACCCTCGATCCGGTCCGAT
18794407 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18794434 TTAGACATGG
Statistics
Matches: 153, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 146 0.95
159 4 0.03
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTAAGC
CGACCGAAGAGGCAAAATGCACAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCT
ACTACCGTAACCCTCGATCCGGTCCGAT
Found at i:18794436 original size:26 final size:26
Alignment explanation
Indices: 18794407--18794457 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18794397 CCGGTCCGCT
18794407 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18794433 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
18794458 ACCTCAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18794938 original size:26 final size:26
Alignment explanation
Indices: 18794909--18794961 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18794899 CTGGTCTGAT
*
18794909 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18794935 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18794961 C
1 C
18794962 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18795317 original size:26 final size:26
Alignment explanation
Indices: 18795288--18795340 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18795278 CCGGTCTGAT
18795288 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18795314 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18795340 C
1 C
18795341 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18801467 original size:26 final size:26
Alignment explanation
Indices: 18801438--18801489 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18801428 CCGATTTGAT
*
18801438 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18801464 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18801490 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18801847 original size:26 final size:26
Alignment explanation
Indices: 18801818--18801870 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18801808 CCGATCCGAT
* *
18801818 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
*
18801844 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
18801870 C
1 C
18801871 CTAAGCAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:18802735 original size:26 final size:26
Alignment explanation
Indices: 18802699--18802751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18802689 CCGATCTGAT
18802699 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18802725 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18802751 C
1 C
18802752 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18803455 original size:26 final size:26
Alignment explanation
Indices: 18803417--18803469 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
18803407 GGCTCAAACT
*
18803417 CTTAGACTGGGAAT-AAGCTTCGTATG
1 CTTAGACTGGGAATGAA-CTCCGTATG
18803443 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18803469 C
1 C
18803470 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18804288 original size:159 final size:159
Alignment explanation
Indices: 18804003--18804431 Score: 366
Period size: 159 Copynumber: 2.7 Consensus size: 159
18803993 GCCTAGACAT
* * *
18804003 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGTCGGAG
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAGCCAGTCGGAG
* ** * ** * * **
18804068 AGGTAGAATGTACAAGTTGGGGATCGACCCGATCCCCTTCTTTGTGCTGTCGATCCTGCTGCTGC
66 AGGCAGAATGTACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGACCCCGCTGCCAC
18804133 AACCCTCAGTTCGGTCCGATCTTAGACTG
131 AACCCTCAGTTCGGTCCGATCTTAGACTG
* * * * * * *
18804162 GGAATAAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAGCCAGTTGGAG
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAGCCAGTCGGAG
* ** * *
18804227 AGGCATAATGTGTAAGCCGGGGATC-AGCCCGGTCCCCCTCTACGTGCTGTCGGCCCCGCTGCCA
66 AGGCAGAATGTACAAGCCGGGGATCGA-CCCGATCCCCCTCTACGTGCTGTCGACCCCGCTGCCA
* * * * ** *
18804291 CAACCCTC-GGTCCGACTGGGGCTCAGACAT-
130 CAACCCTCAGTTCGGTC-CGATCTTAGAC-TG
** * * * * * * * *
18804321 GGAATTTACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCACTCAGCCGGCCAGA
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAACGA-GCGTACAGGCACTCAGCCAGTCGGA
* * **
18804385 GAGGCAGAATGCACAAGCCAGGGATCGGTCCGAT-CCCC-CTACGTGCT
65 GAGGCAGAATGTACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCT
18804432 ACCGATCCTA
Statistics
Matches: 212, Mismatches: 53, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 9 0.04
158 11 0.05
159 191 0.90
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAGCCAGTCGGAG
AGGCAGAATGTACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGACCCCGCTGCCAC
AACCCTCAGTTCGGTCCGATCTTAGACTG
Found at i:18804505 original size:26 final size:26
Alignment explanation
Indices: 18804469--18804521 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18804459 CCGGTTTGAT
18804469 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
18804495 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18804521 C
1 C
18804522 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18805772 original size:158 final size:158
Alignment explanation
Indices: 18805350--18805800 Score: 436
Period size: 153 Copynumber: 2.9 Consensus size: 158
18805340 TTGATCCTGT
* * * * *
18805350 TGTCGTAACCCTCGGTCCGATCTGATCTTAGATTGGGAATAAACTCTGTATGCATAAGTCAACCC
1 TGTCGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACT-TGCATGCATAAGTCAACCC
* * * *
18805415 ATGAAATGAGCGTGCTGGCACTAAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGGCCC
65 ATGAAACGAGCGTACGGGCACTAAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGACCC
* **
18805480 GGTCCCCCTCTACGTGCTGTCGGTCTCGC
130 GGTCCCCCTCGACGTGCTGTCAATCTCGC
** * * ** * * * *
18805509 TACCACAACCCTCGG-TCTG-GCTAGGGCTTAGACAT-AGAATGAAC-T-C---CCTATGCCAAC
1 TGTCGCAACCCTCGGTTC-GATCT-GATCTTAGAC-TGGGAATGAACTTGCATGCATAAGTCAAC
* * * * * * * * *
18805566 CCACGTAACGAACGTACGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCACAAGCCGAGGATCGAC
63 CCATGAAACGAGCGTACGGGCACTAAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGAC
*
18805631 CCGGTCCCCCT-GACGTGCTGTCAATC-CTTC
128 CCGGTCCCCCTCGACGTGCTGTCAATCTC-GC
* *
18805661 TGTCGCAACCTTCGGTTCGATCTGATCTTATACTGGGAATGAACTTTGCATGCATAAGTCAACCC
1 TGTCGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAAC-TTGCATGCATAAGTCAACCC
* ** *
18805726 ATGAAACGAGCGTACGGGCACTGAGCCAACCGAAGAGGCATAATGCACAAGCCGAGGATCGACCT
65 ATGAAACGAGCGTACGGGCACTAAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGACCC
18805791 GGTCCCCCTC
130 GGTCCCCCTC
18805801 TGCATGTTGC
Statistics
Matches: 222, Mismatches: 56, Indels: 28
0.73 0.18 0.09
Matches are distributed among these distances:
151 2 0.01
152 40 0.18
153 75 0.34
154 1 0.00
155 1 0.00
157 1 0.00
158 75 0.34
159 26 0.12
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
TGTCGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTTGCATGCATAAGTCAACCCA
TGAAACGAGCGTACGGGCACTAAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGACCCG
GTCCCCCTCGACGTGCTGTCAATCTCGC
Done.