Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 170 of 402
Found at i:18805828 original size:311 final size:310
Alignment explanation
Indices: 18805271--18806021 Score: 823
Period size: 311 Copynumber: 2.4 Consensus size: 310
18805261 AATGAGCGGG
* * * * *
18805271 CGGGCGCTCAGTCGACCAAAGAGGCAGAATGCGCAAGTCAGGGATCGGCTCGATCCCCCCTATGT
1 CGGGCGCTCAGTCGACCAAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTACGT
** * * *
18805336 GCTGTTGATCCTGTTGTCGTAACCCTCGGTCCGATCTGATCTTAGATTGGGAATAAACTCTGTAT
66 GCTGTCAATCCTGTTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAACTCTGCAT
* * * **
18805401 GCATAAGTCAACCCATGAAATGAGCGTGCTGGCACTAAGCCGGCCGAAGAGGCATAATGCACAAG
131 GCATAAGTCAACCCATGAAACGAGCGTACGGGCACTAAGCCAACCGAAGAGGCATAATGCACAAG
* * * * **
18805466 CCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCTGGCT
196 CCGAGGATCGACCCGGTCCCCCTCTACATGCTGCCGGTCCCGCTACCACAA-CCTCAATCTGGCT
18805531 AGGGCTTAGACATAGAATGAACTCCCTATGCCAACCCACGTAACGAACGTA
260 AGGGCTTAGACATAGAATGAACTCCCTATGCCAACCCACGTAACGAACGTA
* ** * *
18805582 CGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCACAAGCC-GAGGATCGACCCGGT-CCCCCTGAC
1 CGGGCGCTCAGTCGACCAAAGAGGCAGAATGCACAAGCCAG-GGATCGACCCGATCCCCCCT-AC
* * * * *
18805645 GTGCTGTCAATCCT-TCTGTCGCAACCTTCGGTTCGATCTGATCTTATACTGGGAATGAACTTTG
64 GTGCTGTCAATCCTGT-TGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAACTCTG
*
18805709 CATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTGAGCCAACCGAAGAGGCATAATGCAC
128 CATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTAAGCCAACCGAAGAGGCATAATGCAC
* * * *
18805774 AAGCCGAGGATCGACCTGGTCCCCCTCTGCATGTTGCCGGTCCCGCTGCCACAACCTCAATCTGG
193 AAGCCGAGGATCGACCCGGTCCCCCTCTACATGCTGCCGGTCCCGCTACCACAACCTCAATCTGG
* * ** *
18805839 CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTG
258 CTAGGGCTTAGACATAGAATGAACTCCCTA----T--GCCAACCCACGTAACGAACGTA
* * ** * * * *
18805898 CGGGTGCTCAATC-AGCCGGAGAGGCAGAAT-CTGCAAG-CTGGAGATCGGCCCGGTCCCCCCTA
1 CGGGCGCTCAGTCGA-CCAAAGAGGCAGAATGC-ACAAGCCAGG-GATCGACCCGATCCCCCCTA
* * ** * * *
18805960 CGTGCTG-CTGATCCTGTTATCGCAACCCTCAATCCGGTTTGATCTTAGACTGGGAATGAACT
63 CGTGCTGTC-AATCCTGTTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAACT
18806022 TCGTATGCTT
Statistics
Matches: 368, Mismatches: 56, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
310 46 0.12
311 201 0.55
314 1 0.00
315 4 0.01
316 109 0.30
317 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (310 bp):
CGGGCGCTCAGTCGACCAAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTACGT
GCTGTCAATCCTGTTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAACTCTGCAT
GCATAAGTCAACCCATGAAACGAGCGTACGGGCACTAAGCCAACCGAAGAGGCATAATGCACAAG
CCGAGGATCGACCCGGTCCCCCTCTACATGCTGCCGGTCCCGCTACCACAACCTCAATCTGGCTA
GGGCTTAGACATAGAATGAACTCCCTATGCCAACCCACGTAACGAACGTA
Found at i:18805858 original size:158 final size:157
Alignment explanation
Indices: 18805385--18805901 Score: 451
Period size: 158 Copynumber: 3.3 Consensus size: 157
18805375 TCTTAGATTG
* * * * *
18805385 GGAATAAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCTGGCACTAAGCCGGCCGAAG
1 GGAATGAACT-TGCATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTAAGCCGGCCGAAG
* * * *
18805450 AGGCATAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCTCGCTACCAC
65 AGGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
18805515 AACCCTCGGTCTGGCTAGGGCTTAGACAT
130 AA-CCTCGGTCTGGCTAGGGCTTAGACAT
* * * * * * * * * * *
18805544 AGAATGAAC-T-C---CCTATGCCAACCCACGTAACGAACGTACGGGCGCTCAGTCGGCCGGAGA
1 GGAATGAACTTGCATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTAAGCCGGCCGAAGA
* * ** ** * *
18805604 GGTAGAATGCACAAGCCGAGGATCGACCCGGT-CCCC-CTGACGTGCTGTCAATCCTTCTGTCGC
66 GGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTG-CGTGCTGTCGGTCCCGCTGCCAC
* ** *
18805667 AACCTTCGGT-TCGATCT-GATCTTATAC-T
130 AACC-TCGGTCT-G-GCTAGGGCTTAGACAT
* **
18805695 GGGAATGAACTTTGCATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTGAGCCAACCGAA
1 -GGAATGAAC-TTGCATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTAAGCCGGCCGAA
* * * *
18805760 GAGGCATAATGCACAAGCCGAGGATCGACCTGGTCCCCCTCTGCATGTTGCCGGTCCCGCTGCCA
64 GAGGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCA
**
18805825 CAACCTCAATCTGGCTAGGGCTTAGACAT
129 CAACCTCGGTCTGGCTAGGGCTTAGACAT
** * * * * *
18805854 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG
1 GGAATGAACTTGC-ATGCATAAGTCAACCCATGAAACGAGCGTACGGG
18805902 TGCTCAATCA
Statistics
Matches: 271, Mismatches: 70, Indels: 35
0.72 0.19 0.09
Matches are distributed among these distances:
151 6 0.02
152 42 0.15
153 67 0.25
154 1 0.00
155 1 0.00
157 5 0.02
158 115 0.42
159 31 0.11
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GGAATGAACTTGCATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTAAGCCGGCCGAAGA
GGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACA
ACCTCGGTCTGGCTAGGGCTTAGACAT
Found at i:18805921 original size:158 final size:157
Alignment explanation
Indices: 18805398--18805966 Score: 446
Period size: 158 Copynumber: 3.6 Consensus size: 157
18805388 ATAAACTCTG
* * * * * * * * *
18805398 TATGCATAAGTCAACCCATGAAATGAGCGTGCTGGCACTAAGCCGGCCGAAGAGGCATAATGCAC
1 TATGC-TAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCGAAGAGGCATAATGCAC
* * * *
18805463 AAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCTG
65 AAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAA-CCTCGGTCTG
*
18805528 GCTAGGGCTTAGACATAGAATGAACTCCC
129 GCTAGGGCTTAGACATGGAATGAACTCCC
* * * * * *
18805557 TA---T--GCCAACCCACGTAACGAACGTACGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCACA
1 TATGCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCGAAGAGGCATAATGCACA
** ** * *
18805617 AGCCGAGGATCGACCCGGT-CCCC-CTGACGTGCTGTCAATCCTTCTGTCGCAACCTTCGGT-TC
66 AGCCGAGGATCGACCCGGTCCCCCTCTG-CGTGCTGTCGGTCCCGCTGCCACAACC-TCGGTCT-
* ** * **
18805679 GATCT-GATCTTATAC-TGGGAATGAACTTTGC
128 G-GCTAGGGCTTAGACAT-GGAATGAAC-TCCC
* * * * * *
18805710 -ATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTGAGCCAACCGAAGAGGCATAATGCAC
1 TATGC-TAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCGAAGAGGCATAATGCAC
* * * * **
18805774 AAGCCGAGGATCGACCTGGTCCCCCTCTGCATGTTGCCGGTCCCGCTGCCACAACCTCAATCTGG
65 AAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTCGGTCTGG
18805839 CTAGGGCTTAGACATGGAATGAACTCCC
130 CTAGGGCTTAGACATGGAATGAACTCCC
* * * * * * *
18805867 TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAATCAGCCGGAGAGGCAGAAT-CTG
1 TATG-CTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCGAAGAGGCATAATGC-A
* * *
18805931 CAAGCTG-GAGATCGGCCCGGTCCCCC-CTACGTGCTG
64 CAAGCCGAG-GATCGACCCGGTCCCCCTCTGCGTGCTG
18805967 CTGATCCTGT
Statistics
Matches: 310, Mismatches: 79, Indels: 44
0.72 0.18 0.10
Matches are distributed among these distances:
151 6 0.02
152 43 0.14
153 66 0.21
155 1 0.00
156 1 0.00
157 13 0.04
158 150 0.48
159 27 0.09
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
TATGCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCGAAGAGGCATAATGCACA
AGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTCGGTCTGGC
TAGGGCTTAGACATGGAATGAACTCCC
Found at i:18806044 original size:26 final size:26
Alignment explanation
Indices: 18806003--18806055 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18805993 CCGGTTTGAT
18806003 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18806029 CTTAGACTTGGG-ATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
18806055 C
1 C
18806056 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18806704 original size:26 final size:26
Alignment explanation
Indices: 18806675--18806724 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18806665 CTGGTCCGAT
18806675 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
18806701 CTTATACTAGGGATGAACTCCGTA
1 CTTAGACTAGGGATGAACTCCGTA
18806725 CGCATAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:18807067 original size:26 final size:26
Alignment explanation
Indices: 18807017--18807069 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18807007 CTGATCCGAT
**
18807017 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18807043 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18807069 C
1 C
18807070 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18807111 original size:342 final size:340
Alignment explanation
Indices: 18806358--18807435 Score: 1022
Period size: 343 Copynumber: 3.1 Consensus size: 340
18806348 CCAATCTGAT
** * * * * * * *
18806358 CTTAGACTGGCAATGAACTTCGTATGCATAAGTTAACCCATGAAACGAGCGTT-CGGGCGTTGAG
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCAAGAAATGAGC-TTGCGGGTGCTAAG
* * * ** * *
18806422 CTGGCCGAAGAGGTATAATGCACAAGCCGGGGATTGGCTCGGTCCCCCTTTGCGTACTATCGATC
65 CCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCACGGTCCCCCTTTGCGTGCTATCGATC
* *
18806487 CCACTGCCATAACCCTCGGTCTGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCACTGCCATAA-CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
** * * * * * * ** *
18806552 ATGCACGAAACAGGTGTACAGGCGCTCAG-CCAGTTGGAGGGGCAGAATGCACAAGTCGGGGATT
194 ACCCACGAAACAGGCGTGCAGGTGCTCAGTCGA-TCGGAGAGGCAGAATGTGCAAGT-GGGGACT
* *
18806616 GGCCCTATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGGTCCGATCTTAGA
257 -GCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGATCCGATCTTAGA
*
18806681 CTGGGAATGAACTCCGTATG
321 CTGGGAATGAACTTCGTATG
* * * * * * * *
18806701 CTTATACTAGGGATGAACTCCGTACGCATAAGTTAACCCACGAAATGAGCGTGC-GATCACTAAG
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCAAGAAATGAGCTTGCGGGT-GCTAAG
* ** * * *
18806765 CCGACCGAAGAGGCATAATGCACAAGTCGAAGATCAGCCCGGTCCCCCTCTACGTGCTATC-AGT
65 CCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCACGGTCCCCCTTTGCGTGCTATCGA-T
* *
18806829 CCCGCTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCACTGCCATAACC-TCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
18806894 AACCCACAAAACAGGCGTGGAGATGCTCAGTCGACCGGAGAGGTAGAATGTGTAAGCTGGGGACC
193 AACCCACGAAACAGGCGTGCAGGTGCTCAGTCGATCGGAGAGGCAGAATGTGCAAG-TGGGGA-C
* * ** *
18806959 TGCCCGAT-CCCCCTGCGTGCTGCCGATCCTGCTGTCATAACCCTCGGTCTGATCCGATCTTAGA
256 TGCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGATCCGATCTTAGA
*
18807023 CTGGGAATGAACTTTGTATG
321 CTGGGAATGAACTTCGTATG
* * *
18807043 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAAAAATGAGCTTGCGGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCAAGAAATGAGCTTGCGGGTGCTAAGC
*
18807108 CGACCGGAGAGGCATAA-G-ACGTAAGCCGGGGATCAGCACGGTCCCCCTTTGCGTGCTGCCGAT
66 CGACCGAAGAGGCATAATGCAC--AAGCCGGGGATCAGCACGGTCCCCCTTTGCGTGCT----AT
* * *
18807171 CCCGCTGCCTGGTCCTACTGCCATAATCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCT
125 --CGAT--C----CC-ACTGCCATAA-CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCC
* * ** * * *
18807236 GTATGCCTAAACCAACCCACGAAACAAACGTGCCGGTGCTCAGTCGATCAGAGAGGCAGAATCTG
180 CTATGCCTAAGCCAACCCACGAAACAGGCGTGCAGGTGCTCAGTCGATCGGAGAGGCAGAATGTG
* * * * * * * *
18807301 CAAGTTGGGGATCGGCCCCGATCCCCCCTACAT-ATTCCGATCTTACTGCCGCAACCCTCAGTCC
245 CAAG-TGGGGA-CTG-CCCGATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCT
* * *
18807365 AATCTGATCTTAGACTGAGAATGAACTTCGTATG
307 GATCCGATCTTAGACTGGGAATGAACTTCGTATG
* * * * *
18807399 CCTAGA-TGTGGATGAACACCGTATGCCTAAGCCAACC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACC
18807436 TACAAAACGA
Statistics
Matches: 594, Mismatches: 114, Indels: 42
0.79 0.15 0.06
Matches are distributed among these distances:
340 2 0.00
341 1 0.00
342 169 0.28
343 204 0.34
344 4 0.01
346 2 0.00
348 2 0.00
350 1 0.00
354 2 0.00
355 134 0.23
356 65 0.11
357 8 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (340 bp):
CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCAAGAAATGAGCTTGCGGGTGCTAAGC
CGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCACGGTCCCCCTTTGCGTGCTATCGATCC
CACTGCCATAACCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACAGGCGTGCAGGTGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGTGGGGACTGCCC
GATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGATCCGATCTTAGACTGGG
AATGAACTTCGTATG
Found at i:18810674 original size:26 final size:27
Alignment explanation
Indices: 18810645--18810702 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
18810635 CCGATCTGAT
18810645 CTTAAG-CTAGGAATGAACTCCGTATG
1 CTTAAGACTAGGAATGAACTCCGTATG
* *
18810671 CTT-AGACTGGGGATGAACTCCGTATG
1 CTTAAGACTAGGAATGAACTCCGTATG
*
18810697 CCTAAG
1 CTTAAG
18810703 TCAACCCACG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.07
26 23 0.85
27 2 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAAGACTAGGAATGAACTCCGTATG
Found at i:18812316 original size:26 final size:26
Alignment explanation
Indices: 18812265--18812317 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18812255 GGCTCAAAAT
* *
18812265 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18812291 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
18812317 C
1 C
18812318 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18812727 original size:901 final size:901
Alignment explanation
Indices: 18810488--18814280 Score: 5788
Period size: 903 Copynumber: 4.2 Consensus size: 901
18810478 TCCGGCTGGG
* * ** * *
18810488 GCTTAGACTTGGAATGAACTCCCTATGTTTAAGCCAACCCACGAATCGGGA-GTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATC-GGACGTACGGGCGCTCA
* * * * * * *
18810552 GTTGGCCGGAGAGGCAGAATGTGCAAGTCGAGATCAACCTGAT-CCCCCTGTGTGTTGCCGGTCC
65 GTCGGCCGGAGAGGCAGAATGCGCAAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGTCGGTCC
* * * * * *
18810616 TGCTGTCGCAACCCTCAGTCCGATCTGATCTTAAGCTAGGAATGAACTCCGTATGCTTAGACTGG
130 TGCTG-CCCAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTAAGCTTAGACTGG
* * *
18810681 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGCGGGCGTTCAGTCGACCAGAGA
194 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGA
* * *
18810746 GGCAGGATGCGCAAGCCAGGGATCGACCGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCT
259 GGCAGGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCT
* * *
18810811 GCCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTACCCTAAGCCTTCATGTGAA
324 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAA
** *
18810876 GTTTAATGGCAAGACGACCCGTTTTCTATTTTTCACTATTTTCAAAACCTTTTGCGGTTCGAGTT
389 GTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACTATTTTCAAAACCTTTTGCGGTTCGGGTT
*
18810941 TTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCCTGTATTTTTG
454 TTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTG
** *
18811006 TTGGCATGCAAAAAAAATCAGCTAAAAACTTAAAATGGAGAAGATTTTGTGATCGTTTGAAAAAA
519 TTGGCATGCAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAAAAA
* *
18811071 GTGTCCCTATTTCAGACACTTTAATGGCTTCTGGCAGGAAACCTATAAAATCTCAAATGCTCTTT
584 GTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* *
18811136 AAGGGGGTCTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGC
649 AAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
18811201 ATCCACTGCACATCATGTGCGCACACCCCCAAGCCCCCTATCGCCGGAACCCTCAATGCCGCTGG
714 ACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCACCGGAACCCCCAATGCCGCTGG
* * * * *
18811266 TTAGGATCTCCGACGATATTCCGACGATGGTGCCCCGGGTGAAAAAAATGCGGCA-TAGCATATG
779 TTAGGATCTCCGACGATGTTCCGACGATGGTGCCCCAGGCGAAAAAAATGCGGCACCAGCACATG
*
18811330 CCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTACGAATGAACTCTGTAT
844 CCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCTGTAT
*
18811388 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTACGGGCGCTCAG
* *
18811453 CCGGCCGGAGAGGCAGAATGCGCAAGTCAAGATCAACCCGATCCCCTCTGCGTGCTGTCGGTCCT
66 TCGGCCGGAGAGGCAGAATGCGCAAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGTCGGTCCT
* *
18811518 GCTGCCGCAACCCTCGGTCCGGTCTGTTCTTAGGCTGGGAATGAACTCCATAAGCTTAGACTGGG
131 GCTGCC-CAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTAAGCTTAGACTGGG
* *
18811583 GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAAAGTATGGGCGCTCAGCCGACCAGAGAG
195 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAG
* *
18811648 GCAAGATGTGCAAGCCGGGGATCGAACAGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTG
260 GCAGGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTG
*
18811713 CCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
325 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
* * *
18811778 TTTCGTGGCAAGACGACCTGTTTTCTATTTTTCATTATTTTTAAAACCTTTTGCGGTTCGGGTTT
390 TTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACTATTTTCAAAACCTTTTGCGGTTCGGGTTT
*
18811843 TTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAATATGGTAGAGGTGATCCTTGTATTTTTGT
455 TTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGT
18811908 TGGCATGCAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAAAAAG
520 TGGCATGCAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAAAAAG
18811973 TGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
585 TGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
* *
18812038 AGGTGGTGTGAGTTATGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
650 AGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
*
18812103 CCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCACCGGAACCCCCAATGTCGCTGGT
715 CCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCACCGGAACCCCCAATGCCGCTGGT
* * * *
18812168 TAGGATCTCCGACGATGTTCTGACAATGGTGCCCCAGGCGAAAAAAATGTGGCACCAGCATATGC
780 TAGGATCTCCGACGATGTTCCGACGATGGTGCCCCAGGCGAAAAAAATGCGGCACCAGCACATGC
18812233 CCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACT-TCGTAT
845 CCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCT-GTAT
*
18812290 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCAGACGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTACGGGCGCTCAG
* * *
18812355 TCGGCCGGAGAGGCAGAATACGCAAGTCAAGATCAACTCGATCCCCCCTGCGTGCTATCGGTCCT
66 TCGGCCGGAGAGGCAGAATGCGCAAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGTCGGTCCT
* *
18812420 GCTGTCCCAACCCTCGGTCCGGTCTGCTCTTAGGCTGGGAATGAACTCCGTAAGCTTAGACTGGA
131 GCTG-CCCAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTAAGCTTAGACTGGG
*
18812485 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACTAGAGAG
195 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAG
* *
18812550 GCAGGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATTTTCATATTTCTT
260 GCAGGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTG
18812615 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
325 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
*
18812680 TTTCGTGGTAAGACGACCCGTTTTCTATTTTTCACTA-TTTCAAAACCTTTTGCGGTTCGGGTTT
390 TTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACTATTTTCAAAACCTTTTGCGGTTCGGGTTT
*
18812744 TCTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGT
455 TTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGT
18812809 TGGCATGCAAAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAAAA
520 TGGCATGC--AAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAAAA
*
18812874 AGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCACATGCTCTT
583 AGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
* *
18812939 TAAGGGGGTGTGAGTTTTGGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
648 TAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * **
18813004 CACGCACCGCACATCATGTGCGCACACCCCCCAGCCCCCTATCGTCGGAACCCCCAATGCCGCTG
713 CACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCACCGGAACCCCCAATGCCGCTG
* * * *
18813069 GTTAGGATCTCCGACGATGTTCTGACGATGGTGCCCCGGGCGAAAAAAGTGCAGCACCAGCACAT
778 GTTAGGATCTCCGACGATGTTCCGACGATGGTGCCCCAGGCGAAAAAAATGCGGCACCAGCACAT
* *
18813134 GCCCGAGCCCAGCATGTGCATCATGGCTCAAAATCTTAGACTAGGAATGAACTCCGTAT
843 GCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCTGTAT
* * * *
18813193 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAATCGGGCGTCCGGGCGGTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTACGGGCGCTCAG
* * * * ** *
18813258 CCGGCTGGAGAGGCAGAATGCGCAAGTCAAGATCAACTCGATCCCCCCTACGTGCTACCGGTCCG
66 TCGGCCGGAGAGGCAGAATGCGCAAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGTCGGTCCT
* * * * *
18813323 GCTGCCGGAACCCTCGGTCCGATCTGCTCTTAGGCTGGGGATGAACTCCATAAGCTTAGACTGGG
131 GCTGCC-CAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTAAGCTTAGACTGGG
*
18813388 GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAG
195 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAG
* *
18813453 GCAGGATGTGCAAGTCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTTTG
260 GCAGGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTG
18813518 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
325 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
* * *
18813583 TTTCGTGGCAAGACGACCCCTTTTATATTTTTCACTATTTTCAAAACCTTTTACGGTTCGGGTTT
390 TTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACTATTTTCAAAACCTTTTGCGGTTCGGGTTT
* * ** * * *
18813648 CTTTAAAATTTTTTTAGAAAGAGCCTTGTTCCCAAATTTGGTAGA-GTGATCGTTGTATTTTTTT
455 TTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGT
* * * * * *
18813712 TGGCGTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGGCTGTTTGGAAAA
520 TGGCATGCA-AAAAAAA-TCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAAAA
* * *
18813777 AGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAATCCTATAAAATCTCAAATGCTCTT
583 AGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
* ** * * *
18813842 TAAGGGGGTGAGAGTTCTCAAAGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTGCCAG
648 TAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
18813907 CACCCATCGCACATCATGTGCGCACACCCCTCGACCCCACCAATCACAGGAACCCCCAATGCCG-
713 CACCCACCGCACATCATGTGCGCACACCCC-CAAGCCC-CCTATCACCGGAACCCCCAATGCCGC
* * ** *
18813971 TCGGTTAGGATCTCCGGCGATGCTCCGGTGAGGGTGCCCCAGGC-AAAACAAATGCGGCACCAGC
776 T-GGTTAGGATCTCCGACGATGTTCCGACGATGGTGCCCCAGGCGAAAA-AAATGCGGCACCAGC
* * * * * *
18814035 ACAAGCCCTAGCCCAGCATGTGCA-CCTGGCTCAAAATCCTAGATTGGGAATGAACTCTGTAT
839 ACATGCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCTGTAT
* * * *
18814097 GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCACAAAAC-GAGCGTACGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGA-CGTACGGGCGCTCA
** * * * ** ** * * **
18814161 GTCGATCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCAAT
65 GTCGGCCGGAGAGGCAGAATGCGCAAGTC-AAGATCAACCCGATCCCCC-CTGCGTGCTGTCGGT
* * *
18814226 CTTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
128 CCTGCTGC-CCAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTA
18814281 TGCATAAGTC
Statistics
Matches: 2653, Mismatches: 219, Indels: 36
0.91 0.08 0.01
Matches are distributed among these distances:
899 3 0.00
900 94 0.04
901 769 0.29
902 475 0.18
903 970 0.37
904 184 0.07
905 104 0.04
906 54 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (901 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTACGGGCGCTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGTCGGTCCT
GCTGCCCAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTAAGCTTAGACTGGGG
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAGG
CAGGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGC
CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
TTCGTGGCAAGACGACCCGTTTTCTATTTTTCACTATTTTCAAAACCTTTTGCGGTTCGGGTTTT
TTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTT
GGCATGCAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCACCGGAACCCCCAATGCCGCTGGTT
AGGATCTCCGACGATGTTCCGACGATGGTGCCCCAGGCGAAAAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCTGTAT
Found at i:18813206 original size:26 final size:26
Alignment explanation
Indices: 18813168--18813220 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18813158 GGCTCAAAAT
*
18813168 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18813194 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
18813220 C
1 C
18813221 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18814392 original size:159 final size:159
Alignment explanation
Indices: 18814097--18814527 Score: 463
Period size: 159 Copynumber: 2.7 Consensus size: 159
18814087 AACTCTGTAT
* * *
18814097 GCTTAGACATGGAATGAACTCCATATGCCTAA-TCCAACCCACAAAACGAGCGTACGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGT-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *** *
18814161 GTCGATCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCAAT
65 GCCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACATGCTGCCAAT
** ** *
18814226 CTTGCTGCTGCAACCCTCGGTCCGGTCT-GA
130 CCCGCTGCCACAACCCTCAGTCCGGT-TGGA
* * * * * *
18814256 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCGACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
18814320 CCCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACATGCTGCCAGT
65 GCCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACATGCTGCCAAT
* *
18814385 CCCGCTGCCACAACCCTCAGTTCGGTTGGG
130 CCCGCTGCCACAACCCTCAGTCCGGTTGGA
** * * * *
18814415 GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCATGAAACGGGCGTGCCGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18814480 CCAGTCGAAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCC
66 CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCC
18814528 CTGCGTGCTA
Statistics
Matches: 222, Mismatches: 46, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
158 2 0.01
159 218 0.98
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACATGCTGCCAATC
CCGCTGCCACAACCCTCAGTCCGGTTGGA
Found at i:18814740 original size:184 final size:184
Alignment explanation
Indices: 18814415--18814784 Score: 442
Period size: 184 Copynumber: 2.0 Consensus size: 184
18814405 TTCGGTTGGG
** * *
18814415 GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCATGAAACGGGCGTGCCGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCCGGCGCTCAG
* ** * * *
18814480 CCAGTCGAAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCT
66 CCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGACCCCCCCTGCATACTACCGATCC
* * *
18814545 TGCTATCGTAACCCTC-GATCTGATCTGATCTTAGATTCGGAATGAACTCCGTAT
131 TGCTATCGTAACCCTCTG-TCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* * * *
18814599 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCCGGCGCTCA
* * * * ** **
18814663 GGCGGTCGGAGAGGCATAATGCGCAAGAT-GGGGATC-AGCTTGACCCCCCCTGCATACTGTCGA
65 GCCAGTCGAAGAGGCAGAATGCGCAAG-TCGGGGATCGA-CCCGACCCCCCCTGCATACTACCGA
*
18814726 TCCTGCTGTCGTAACCCTCTGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
128 TCCTGCTATCGTAACCCTCTGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
18814783 GC
1 GC
18814785 ATAAGTCAAG
Statistics
Matches: 156, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 2 0.01
184 152 0.97
185 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCCGGCGCTCAG
CCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGACCCCCCCTGCATACTACCGATCC
TGCTATCGTAACCCTCTGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:18815060 original size:500 final size:502
Alignment explanation
Indices: 18814069--18815127 Score: 1326
Period size: 500 Copynumber: 2.1 Consensus size: 502
18814059 CCTGGCTCAA
* * * *
18814069 AATCCTAGATTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAATCCA
1 AATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAATCCA
* * * *
18814133 ACCCACAAAACGAGCGTACGAGCGCTCAGTCGATCGGAGAGGCAAAATGCGTAAGCCGGGGATCG
65 ACCCACAAAACGAGCGTACGAGCGCTCAGGCGATCGGAGAGGCAAAATGCGCAAGACGGGGATCA
* * ** * * * *
18814198 GCCCGGTCCCCCTCTGTGTGCTGTCAATCTTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGA
130 GCCCGGACCCCCCCTGCATACTGTCAATCCTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGA
* * * *
18814263 CTGGGAATGAACTCCGTATGCATAAGTCGACCCACGAAACGAGCGTGCGGGCACTGACCCGGTCG
195 CTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGACCCAGCCG
* *
18814328 AAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACATGCTGCCAGTCCCGCTGC
260 AAGAGGCATAATGCACAAGCAGAGGATCGACCCGGTCCCCCTCTACATGCTGCCAGTCCCGCTGC
* ** *
18814393 CACAACCCTCAGTTCGGTTGGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCATG
325 CACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
18814458 AAACGGGCGTGCCGGCGCTCAGCCAGTCGAAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGT
390 AAACGGGCGTGCCGGCGCTCAGCCAGACCAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGAT
* * * * * * *
18814523 CCCCCCTGCGTGCTACCGATCTTGCTATCGTAACCCTCGATCTGATCT
455 CCACCCTACGAGCTACCGATCCTGCTATCGCAACCCTCGATCCGACCT
* *
18814571 GATCTTAGATTCGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT-CA
1 AATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA-TCCA
* * * * * * *
18814635 ACTCACGAAACGAGCGTGCGGGCGCTCAGGCGGTCGGAGAGGCATAATGCGCAAGATGGGGATCA
65 ACCCACAAAACGAGCGTACGAGCGCTCAGGCGATCGGAGAGGCAAAATGCGCAAGACGGGGATCA
** * * * *
18814700 G-CTTGACCCCCCCTGCATACTGTCGATCCTGCTG-TCGTAACCCTCTGTCTGATCCGATCTTAG
130 GCCCGGACCCCCCCTGCATACTGTCAATCCTGCTGCT-GCAACCCTCGGTCCGATCCGATCTTAG
* * *
18814763 ACTAGGAATGAACTCCGTATGCATAAGTCAAGCCACG-AACGAGCGTGCGGGCCCTGAGCCAGCC
194 ACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGACCCAGCC
* * * * * *
18814827 GAAGAGGCATAATGCATAAGCTAG-GGATCGACCCGGTCCCCTTCTGCGTGCTGCCGGTCTCGCT
259 GAAGAGGCATAATGCACAAGC-AGAGGATCGACCCGGTCCCCCTCTACATGCTGCCAGTCCCGCT
* *
18814891 GCCACAGCCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
323 GCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * *
18814956 CGAAATGGGCGTG-CGGTCGCTCAGCC-GACCAGAGAGGCAGAATGCGCAAG-CTAGGGATTGGC
388 CGAAACGGGCGTGCCGG-CGCTCAGCCAGACCA-AGAGGCAGAATGCGCAAGTC-AGGGATCGAC
* * * *
18815018 CCGATCCACCCTACGAGCTATCGATCCTGCTGTCGCAACCCTCGGTCCGGCCT
450 CCGATCCACCCTACGAGCTACCGATCCTGCTATCGCAACCCTCGATCCGACCT
* * *
18815071 AATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGTGATGAACTCCGTATGCC
1 AATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
18815128 AACCCACGGA
Statistics
Matches: 474, Mismatches: 76, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
499 7 0.01
500 275 0.58
501 82 0.17
502 109 0.23
503 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (502 bp):
AATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAATCCAA
CCCACAAAACGAGCGTACGAGCGCTCAGGCGATCGGAGAGGCAAAATGCGCAAGACGGGGATCAG
CCCGGACCCCCCCTGCATACTGTCAATCCTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGAC
TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGACCCAGCCGA
AGAGGCATAATGCACAAGCAGAGGATCGACCCGGTCCCCCTCTACATGCTGCCAGTCCCGCTGCC
ACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGGGCGTGCCGGCGCTCAGCCAGACCAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATC
CACCCTACGAGCTACCGATCCTGCTATCGCAACCCTCGATCCGACCT
Found at i:18816086 original size:157 final size:155
Alignment explanation
Indices: 18815654--18816393 Score: 514
Period size: 159 Copynumber: 4.7 Consensus size: 155
18815644 AGGTAGGTAG
* * * * * *
18815654 AATGCGCAAGCCGGGGACCGGCTCGGTCCCCTCCTGCATGCTATCGATCCTGCTATCGTAACCCT
1 AATGCGTAAGCC-GGGATCGGCCCGGT-CCC-CCTGCATGCTGTCGATCCTGCTGTCGCAACCCT
* * * * * * *
18815719 CGGTCTGATCCGTTCTTAAACTGGGAATGAACTCTGTATGCCTAACTCAACCCACGAAATGAGCG
63 CGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATG-CTAAGTCAACCCACGAAACGAGCG
*
18815784 TGCGGGTGCTGAACTGATCGAAGAGGCAT
127 TGCGGGTGCTGAACCGATCGAAGAGGCAT
* * * * *
18815813 AATGCGTAAGCCGAGGATCAGCCCAGTCCACCTCTGCATGCTGTCGGTTCC-ACTG-CAACAACC
1 AATGCGTAAGCCG-GGATCGGCCCGGTCC-CC-CTGCATGCTGTC-GATCCTGCTGTC-GCAACC
* ** * *
18815876 CTCGGTCT-GACTGGGGCTTAGAC-ATGGAATGAACTCTGTATGGCTAAGCCAACCCAGGAAACG
61 CTCGGTCTGGTCT-GATCTTAGACTA-GGAATGAACTCTGTAT-GCTAAGTCAACCCACGAAACG
* * * * *
18815939 AACGTGCGGGGGCTCAGCCGATCGAAGAGGCAG
123 AGCGTGCGGGTGCTGAACCGATCGAAGAGGCAT
* * * *
18815972 AATGCATAGGCCAGGGATCGGCCCGGTCCCCCTGCATGCTGTCGATCCTGCCGTCGCAACCCTCA
1 AATGCGTAAGCC-GGGATCGGCCCGGTCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCG
*
18816037 GTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTA
65 GTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC-TAAGTCAACCCACGAAACGAGCGTG
* * *
18816102 CGGGTGCTGACCCAACCGAAGAGGCAT
129 CGGGTGCTGAACCGATCGAAGAGGCAT
* * * * * * *
18816129 AATGCGCAAGCCGGGGATCGACCTGGTCCCCCT-CTACGTGCTG-CTAGTCCCGCTGCCACAACC
1 AATGCGTAAGCC-GGGATCGGCCCGGTCCCCCTGC-A--TGCTGTCGA-TCCTGCTGTCGCAACC
* * ** * ** * *
18816192 CTCGATCCGG-CTGGGGCTTAAAC-ATGGAATGAACTCCCTATGCCTTAGCCAACCCAC-AAATC
61 CTCGGTCTGGTCT-GATCTTAGACTA-GGAATGAACTCTGTATG-CTAAGTCAACCCACGAAA-C
* * * * *
18816254 G-GACGTGCGGGTGCTCAACCG-GCCAGAGAGGTAG
122 GAG-CGTGCGGGTGCTGAACCGATCGA-AGAGGCAT
** * * * * * *
18816288 AATGCGTAAGCCGAGGATCGGCTTGATCCCCTCTGCGTGCTGTCGATCCTACTATCGTAACCCTG
1 AATGCGTAAGCCG-GGATCGGCCCGGTCCCC-CTGCATGCTGTCGATCCTGCTGTCGCAACCCTC
** * *
18816353 GGTCCAGTCCGATCTTAGACT-GAGAATGAACTCCGTATGCT
64 GGTCTGGTCTGATCTTAGACTAG-GAATGAACTCTGTATGCT
18816394 TAGATTGGGG
Statistics
Matches: 451, Mismatches: 99, Indels: 64
0.73 0.16 0.10
Matches are distributed among these distances:
156 7 0.02
157 123 0.27
158 69 0.15
159 242 0.54
160 9 0.02
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
AATGCGTAAGCCGGGATCGGCCCGGTCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGG
TCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTAAGTCAACCCACGAAACGAGCGTGCG
GGTGCTGAACCGATCGAAGAGGCAT
Found at i:18816124 original size:316 final size:313
Alignment explanation
Indices: 18815554--18816392 Score: 939
Period size: 316 Copynumber: 2.6 Consensus size: 313
18815544 CCACTACCAT
*
18815554 AACCCTCGATCCGACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-GAAA
* * ** * * * *
18815619 CGGGCGTGTGATTGCTCAGTC-AGCCAGGTAGGTAGAATGCGCAAGCCGGGGACCGGCTCGGTCC
65 CGGACGTGCGGGTGCTCAGCCGAGCCAAG-AGGTAGAATGCGTAAGCC-GGGATCGGCTCGGT-C
* * * *
18815683 CCTCCTGCATGCTATCGATCCTGCTATCGTAACCCTCGGTCTGATCCGTTCTTAAACTGGGAATG
127 CC-CCTGCATGCTGTCGATCCTGCTATCGTAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATG
* * * ** *
18815748 AACTCTGTATGCCTAACTCAACCCACGAAATGAGCGTGCGGGTGCTGAACTGATCGAAGAGGCAT
190 AACTCTGTATGCATAACTCAACCCACGAAACGAGCGTACGGGTGCTGAACCAACCGAAGAGGCAT
* * * *
18815813 AATGCGTAAGCCGAGGATC-AGCCCAGTCCACCTCTGCATGCTG-TCGGTTCCACTGCAAC
255 AATGCGCAAGCCGAGGATCGA-CCCAGTCCACCTCTACATGCTGCT-AGTCCCACTGCAAC
* * ** *
18815872 AACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTGTATGGCTAAGCCAACCCAGGAAA
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-GAAA
* * * * * * * *
18815937 CGAACGTGCGGGGGCTCAGCCGATCGAAGAGGCAGAATGCATAGGCCAGGGATCGGCCCGGTCCC
65 CGGACGTGCGGGTGCTCAGCCGAGCCAAGAGGTAGAATGCGTAAGCC-GGGATCGGCTCGGTCCC
** * * *
18816002 CCTGCATGCTGTCGATCCTGCCGTCGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAAC
129 CCTGCATGCTGTCGATCCTGCTATCGTAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAAC
* *
18816067 TCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTGACCCAACCGAAGAGGCATAAT
193 TCTGTATGCATAACTCAACCCACGAAACGAGCGTACGGGTGCTGAACCAACCGAAGAGGCATAAT
* ** * * * *
18816132 GCGCAAGCCGGGGATCGACCTGGTCCCCCTCTACGTGCTGCTAGTCCCGCTGCCAC
258 GCGCAAGCCGAGGATCGACCCAGTCCACCTCTACATGCTGCTAGTCCCACTGCAAC
* * * *
18816188 AACCCTCGATCCGGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTTAGCCAACCCACAAAT
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAA-
* * *
18816253 CGGACGTGCGGGTGCTCAACCG-GCCAGAGAGGTAGAATGCGTAAGCCGAGGATCGGCTTGATCC
65 CGGACGTGCGGGTGCTCAGCCGAGCCA-AGAGGTAGAATGCGTAAGCCG-GGATCGGCTCGGTCC
* * * **
18816317 CCTCTGCGTGCTGTCGATCCTACTATCGTAACCCTGGGTCCAGTCCGATCTTAGACTGAGAATGA
128 CC-CTGCATGCTGTCGATCCTGCTATCGTAACCCTCGGTCTGGTCCGATCTTAGACTG-GAATGA
*
18816382 ACTCCGTATGC
191 ACTCTGTATGC
18816393 TTAGATTGGG
Statistics
Matches: 429, Mismatches: 84, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
315 6 0.01
316 256 0.60
317 65 0.15
318 98 0.23
319 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (313 bp):
AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAAC
GGACGTGCGGGTGCTCAGCCGAGCCAAGAGGTAGAATGCGTAAGCCGGGATCGGCTCGGTCCCCC
TGCATGCTGTCGATCCTGCTATCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGAATGAACTCT
GTATGCATAACTCAACCCACGAAACGAGCGTACGGGTGCTGAACCAACCGAAGAGGCATAATGCG
CAAGCCGAGGATCGACCCAGTCCACCTCTACATGCTGCTAGTCCCACTGCAAC
Found at i:18816395 original size:26 final size:26
Alignment explanation
Indices: 18816366--18816418 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18816356 CCAGTCCGAT
*
18816366 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
18816392 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18816418 C
1 C
18816419 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18819453 original size:26 final size:26
Alignment explanation
Indices: 18819412--18819464 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18819402 CTGGTTCGAT
18819412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18819438 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
18819464 C
1 C
18819465 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18820103 original size:26 final size:26
Alignment explanation
Indices: 18820074--18820126 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18820064 GGCCCAAAAT
18820074 CTTAGAC-TGCAAATGAACTCCGTATG
1 CTTAGACATG-AAATGAACTCCGTATG
*
18820100 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
18820126 C
1 C
18820127 CTAATCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCGTATG
Found at i:18820641 original size:26 final size:26
Alignment explanation
Indices: 18820600--18820652 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18820590 CCGGTCTGAT
18820600 CTTAGACTGGGAATGAACT-TGGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
18820626 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
18820652 C
1 C
18820653 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18820740 original size:343 final size:339
Alignment explanation
Indices: 18820254--18821761 Score: 1128
Period size: 343 Copynumber: 4.4 Consensus size: 339
18820244 GGTCTGATAC
* *
18820254 GATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTACGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
* * * * *
18820319 CCCATGAAACAAGCGTGCGGGCACTCAGCCGGCTGGAGAGGCATAATACGCAAGCTAGGGATTAG
66 CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCATAATGCGCAAGC-AGGGATCAG
*
18820384 CCCGATCCCCCTCTACATGCTGCTGATCCCGCTACCACAACCCTTGGTCTGGCTGGGGCTTAGAC
130 CCCGATCCCCCTCTACATGCTGCTGATCCCGCTACCACAACCCTTGGTCCGGCTGGGGCTTAGAC
*
18820449 ATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACTGGGGTGCGAGCGCTCAGCCAACCGG
195 ATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACTGGGGTGCG-GCGCTCAGCCAGCCGG
18820514 AGAGGCAGAATGTGCAAGATAGGGATCGGCCCGGTCCCCCCAGCGTGCTGTCGAACCTGCTGTCG
259 AGAGGCAGAATGTGCAAGATAGGGATCGGCCCGGTCCCCCCAGCGTGCTGTCGAACCTGCTGTCG
18820579 CAACCCTTGATCCGGTCT
324 CAACCC-T-ATCCGGTCT
*
18820597 GATCTTAGACTGGGAATGAACT-TGGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCA
1 GATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCA
* ** * * *
18820661 ACCCATGAAACGAGCGTGCGGGTGCTTAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCA
65 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCATAATGCGCAAG-CAGGGATCA
* * * * *
18820726 GTCCGGTTCCCCTCTGCATGCTATTGATCTCGCTGCTAGTCCTGCTACCACAACCC-TCGTCCGG
129 G-CCCGATCCCC-CT-C-TAC-A-TG--CT-GCTG--A-TCCCGCTACCACAACCCTTGGTCCGG
* * *
18820790 CTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACA-AAAC-GAGTGTGCTGG
182 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-AGAAACTG-GGGTGC-GG
* * * * * * * * *
18820853 CGCTCGGCCAGTCAGAGAGGCAGAATGTG-AAAATCGAGGATCGACCCGGTTCACCCCTGCATGC
244 CGCTCAGCCAGCCGGAGAGGCAGAATGTGCAAGATAG-GGATCGGCCCGG-TCCCCCCAGCGTGC
* * *
18820917 TGTCGATCCTGCTATCGTAA--C--T-C--TC-
307 TGTCGAACCTGCTGTCGCAACCCTATCCGGTCT
* * * *
18820942 GA---T---CT--G---G---TCTG-AT-CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * *
18820991 CCCACGAAACGAGTGTGCAGGCACTGAGCCGGCCGAAGAGGCATAATGCACAAGCCAGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCATAATGCGCAAG-CAGGGATCAG
* ** * * * * *
18821056 CCCGATCCCCCTCTGCGCGCTGTTGGTCCCGTTACCACAACCCTCGGTCCAGCTGGGGCTTAGAC
130 CCCGATCCCCCTCTACATGCTGCTGATCCCGCTACCACAACCCTTGGTCCGGCTGGGGCTTAGAC
* * * * *
18821121 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-TGGGCGTGCGGGAGCTGAGCCGGCTG
195 ATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACTGGG-GTGC-GGCGCTCAGCCAGCCG
* * * ** *
18821185 GAGAGGTAGATTGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCGCGTGCTGTC-AATCCTGCTG-
258 GAGAGGCAGAATGTGCAAGATAGGGATCGGCCCGGTCCCCCCAGCGTGCTGTCGAA-CCTGCTGT
18821248 CTGCAACCCTCAGTCCGGT-T
322 C-GCAACCCT-A-TCCGGTCT
* *
18821268 CGATCTTAGAGTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
1 -GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCA
* ** * *
18821333 ACCCACCAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCATAATGCGC-A--A-GG-TC-C
65 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCATAATGCGCAAGCAGGGATCAG
** ** * ** * * * * ** *
18821392 CTCTCTG-TGTGCTGTCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGGCTAGGGCT
130 C-C-C-GAT-CCCCCTCTA-CATGCTGCTGATCCCGCTACCACAACCCTTGGTCCGGCTGGGGCT
* * *
18821456 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA-AAAC-GAGCGTGCGGGTGCTCAGC
190 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-AGAAACTG-GGGTGC-GGCGCTCAGC
* * * * ** * * ** *
18821519 CAACCGAAGAGGTAGAATGCGCAAG-CCGGGAATCGGCTCGATCCCTCTTA-CGTGCTGCCGATC
252 CAGCCGGAGAGGCAGAATGTGCAAGATAGGG-ATCGGCCCGGTCCC-CCCAGCGTGCTGTCGA--
* * *
18821582 CTACTGTTGGTCCTGCTGCCGCAACCCTCAGTCTGGTCC
313 --A--------CCTGCTGTCGCAACCCT-A-TCCGGTCT
* * *
18821621 GATCTTAGACTGGGAATGAACT-TCGTATGCTTAGAC-ATGGAATGAACTACGTATGCCTAAGCC
1 GATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTC
* * * * * * * * *
18821684 AACCCACAAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGTAAAATGTGCAAGCCGAGGATC
64 AACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCATAATGCGCAAGCAG-GGATC
*
18821749 AACCCGATCCCCC
128 AGCCCGATCCCCC
18821762 CTGCGTGCTG
Statistics
Matches: 925, Mismatches: 152, Indels: 163
0.75 0.12 0.13
Matches are distributed among these distances:
316 2 0.00
317 40 0.04
318 89 0.10
319 4 0.00
320 3 0.00
321 2 0.00
323 2 0.00
324 1 0.00
325 3 0.00
326 2 0.00
327 4 0.00
328 8 0.01
329 86 0.09
330 3 0.00
331 2 0.00
332 1 0.00
333 1 0.00
334 1 0.00
335 1 0.00
336 1 0.00
337 4 0.00
338 5 0.01
339 11 0.01
340 130 0.14
341 7 0.01
342 5 0.01
343 189 0.20
344 9 0.01
345 5 0.01
346 3 0.00
347 2 0.00
348 2 0.00
349 3 0.00
351 3 0.00
352 129 0.14
353 9 0.01
354 97 0.10
355 46 0.05
356 2 0.00
357 4 0.00
358 3 0.00
359 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (339 bp):
GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCATAATGCGCAAGCAGGGATCAGC
CCGATCCCCCTCTACATGCTGCTGATCCCGCTACCACAACCCTTGGTCCGGCTGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACTGGGGTGCGGCGCTCAGCCAGCCGGAG
AGGCAGAATGTGCAAGATAGGGATCGGCCCGGTCCCCCCAGCGTGCTGTCGAACCTGCTGTCGCA
ACCCTATCCGGTCT
Found at i:18821308 original size:26 final size:26
Alignment explanation
Indices: 18821272--18821324 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18821262 CCGGTTCGAT
* *
18821272 CTTAGAGTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18821298 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18821324 C
1 C
18821325 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18821662 original size:26 final size:26
Alignment explanation
Indices: 18821624--18821676 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18821614 CTGGTCCGAT
*
18821624 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18821650 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
18821676 C
1 C
18821677 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:18821722 original size:352 final size:340
Alignment explanation
Indices: 18821090--18821726 Score: 821
Period size: 352 Copynumber: 1.8 Consensus size: 340
18821080 GGTCCCGTTA
* * *
18821090 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * ** * * * *
18821155 GAAATGGGCGTGCGGGAGCTGAGCCGGCTGGAGAGGTAGATTGCGCAAGCCAGGGATCGGCCCGG
66 AAAACGAGCGTGCGGGAGCTCAGCCAACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGA
* * * * *
18821220 TCCCCCCCGCGTGCTGTCAATCCTGCTGCTGCAACCCTCAGTCCGGTTCGATCTTAGAGTGGGAA
131 TCCCCCCCGCCTACTGTCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAA
* * * *
18821285 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCGT
196 TGAACTCTGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGT
* * *
18821350 GCGGGTGCTCAGCCGGTCGGAGAGGCATAATGCGCAAGGTCCCTCTCTGTGTGCTGTCGATCCCG
261 ACGGGCGCTCAACCGGTCGGAGAGGCATAATGCGCAAGGTCCCTCTCTGTGTGCTGTCGATCCCG
18821415 CTGCCGGTCCTGCTG
326 CTGCCGGTCCTGCTG
* *
18821430 CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* *
18821495 AAAACGAGCGTGCGGGTGCTCAGCCAACCGAAGAGGTAGAATGCGCAAGCC-GGGAATCGGCTCG
66 AAAACGAGCGTGCGGGAGCTCAGCCAACCGAAGAGGTAGAATGCGCAAGCCAGGG-ATCGGCCCG
*** *
18821559 ATCCCTCTTACGTGCTGCCGATCCTACTGTTGGTCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
130 AT-CC-C---C---C--CCG--CCTACTGTCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGAT
18821624 CTTAGACTGGGAATGAACT-TCGTATGCTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAAC
183 CTTAGACTGGGAATGAACTCT-GTATGCTTAGAC-TGGGAATGAACTACGTATGCCTAAGCCAAC
18821687 CCACAAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGG
246 CCACAAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGG
18821727 TAAAATGTGC
Statistics
Matches: 249, Mismatches: 33, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
339 3 0.01
340 110 0.44
341 2 0.01
342 1 0.00
345 1 0.00
348 1 0.00
350 3 0.01
351 1 0.00
352 126 0.51
353 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (340 bp):
CCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAACGAGCGTGCGGGAGCTCAGCCAACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGA
TCCCCCCCGCCTACTGTCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAA
TGAACTCTGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGT
ACGGGCGCTCAACCGGTCGGAGAGGCATAATGCGCAAGGTCCCTCTCTGTGTGCTGTCGATCCCG
CTGCCGGTCCTGCTG
Found at i:18822002 original size:159 final size:155
Alignment explanation
Indices: 18821649--18822148 Score: 495
Period size: 159 Copynumber: 3.2 Consensus size: 155
18821639 AACTTCGTAT
* * * *
18821649 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
18821714 CCGGTCGGAGAGGTAAAATGTGCAAGCCGAGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCAACCAGATCCCCCCTGCGTGCTGTCGATCC
**
18821779 TACTGCAACCCTCGGTCCAGCCCGA
131 TACCACAACCCTCGGTCCAGCCCGA
* * * * *
18821804 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAG-TCAACCCACGACACGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTACGGGCGCTC
* * * * * *
18821867 AGCCAGCCAGAGAGGCATAATACGCAAGCCGGGGATCGACTCAG-TCCCCCCCTGCGTGCTGTCG
64 AGCCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCAAC-CAGAT-CCCCCCTGCGTGCTGTC-
* * ** *
18821931 GTCTCGCTACCACAACCCTCGGTCCGGCTGGG
126 G-ATC-CTACCACAACCCTCGGTCCAGCCCGA
* * * *
18821963 GCTTAGACATGTAATGAACTCCGTATGCCTAAGCTAACCCACGAAAGGAACGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
18822028 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCTCCTGCATGCTGTTGATCC
66 CCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCAACCAGATCCCCCCTGCGTGCTGTCGAT-C
* * * *
18822093 TGCTATCGCAACCCTCGGTTCAGTCCGA
130 --CTACCACAACCCTCGGTCCAGCCCGA
*
18822121 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18822149 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 57, Indels: 23
0.77 0.16 0.06
Matches are distributed among these distances:
154 1 0.00
155 83 0.30
156 20 0.07
157 4 0.01
158 61 0.22
159 104 0.38
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCAACCAGATCCCCCCTGCGTGCTGTCGATCC
TACCACAACCCTCGGTCCAGCCCGA
Found at i:18822151 original size:26 final size:26
Alignment explanation
Indices: 18822122--18822174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18822112 TCAGTCCGAT
18822122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18822148 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18822174 C
1 C
18822175 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18822213 original size:850 final size:842
Alignment explanation
Indices: 18820795--18823051 Score: 2571
Period size: 850 Copynumber: 2.6 Consensus size: 842
18820785 TCCGGCTAGG
* * * *
18820795 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGTGTGCTGGCGCTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18820860 CCAGTCAGAGAGGCAGAATGTGAAAATCGAGGATCGACCCGGTTCACCCCTGCATGCTGTCGATC
66 CCGGTCAGAGAGGCAGAATGTGCAAGTCGAGGATCGACCC-GATCCCCCCTGCGTGCTGTCGATC
* * * * * *
18820925 CTGCTATCGTAACTCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
130 CTAC--TCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGTCA
* * * *
18820990 ACCCACGAAACGAGTGTGCAGGCACTGAGCCGGCCGAAGAGGCATAATGCACAAGCCAGGGATCG
192 ACCCACGAAACGAGCGTGCGGGCACTGAGCC-GCCG-AGAGGCATAATGCGCAAGCCGGGGATCG
* * * * *
18821055 GCCCGATCCCCCTCTGCGCGCTGTTGGTCCCGTTACCACAACCCTCGGTCCAGCTGGGGCTTAGA
255 GCCAG-TCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGA
* * * *
18821120 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGG-AGCTGAGCCGGCT
319 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCA-CTCAGCCGGCC
* * * * * *
18821184 GGAGAGGTAGATTGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCGCGTGCTGTCAATCCTGCTGC
383 GGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTAC
* * * *
18821249 TGCAACCCTCAGTCCGGTTCGATCTTAGAGTGGGAATGAACTCTGTATGCTTAGACTGGGGATGA
448 CGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGA
** * * * *
18821314 ACTCCGTATGCCTAAGTCAACCCACCAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCATA
513 ACTCCGTATGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAGCCGGTCGGAGAGGAATA
* *** * * *
18821379 AT-G-C-GCA-AG-G-TCCCTCTCTGTGTGCTGTCGATCCCGCTGCCGGTCCTGCTGCCACAACC
578 ATAGACGGCACAGCGATCCCCCTCTACATGCTGTCGATCCCGCTACCGGTCCTACTGCAACAA-C
* *
18821438 CTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG
642 CT---T-CGG-T----C-TAG-CATAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAG
* ** * * *
18821503 CGTGCGGGTGCTC-A-GCCAACCGAAGAGGTAGAATGCGCAAGCCGGGAATCGGCTC-GATCCCT
696 CGTGCAGGCACTCAATG-CAACCGAA-AGGCAGAATGCGCAAGCCGGGAATCGACTCAG-TCCCC
* * ** *
18821565 CT-TACGTGCTGCCGATCCTACTGTTGGTCCTGCTGCCGCAACCCTC-AGTCTGGTCCGATCTTA
758 CTCTACGTGCTGCCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGA-TCCAGTCCAATCTTA
* *
18821628 GACTGGGAATGAACTTCGTAT
822 GACTGGGAATGAACTCCGTAA
* * *
18821649 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * *
18821714 CCGGTCGGAGAGGTAAAATGTGCAAGCCGAGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGTCAGAGAGGCAGAATGTGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
18821779 TACT-GCAACCCTCGGTCCAGCCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACC
131 TACTCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACC
* * * *
18821843 CACGACACGAGCGTGCGGGCGCTGAGCCAGCCAGAGAGGCATAATACGCAAGCCGGGGATCGACT
195 CACGAAACGAGCGTGCGGGCACTGAGCC-GCC-GAGAGGCATAATGCGCAAGCCGGGGATCGGC-
* *
18821908 CAGTCCCCCCCTGCGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACAT
257 CAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACAT
* * * * *
18821973 GTAATGAACTCCGTATGCCTAAGCTAACCCACGAAA-GGAACGTACGGGCACTCAGCCGGCCGGA
322 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG-GCGTGCGGGCACTCAGCCGGCCGGA
* * * *
18822037 GAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCTCCTGCATGCTGTTGATCCTGCTATCGC
386 GAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGC
* * *
18822102 AACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
451 AACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
*
18822167 CCGTATGCCTAAGTCAACCCATGAAACAAATGTGCGGGCGCTCAGCCGGTCGGAGAGGAATAATA
516 CCGTATGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAGCCGGTCGGAGAGGAATAATA
* *
18822232 CGTAACCTGGGGATCAGCCCGATCCCCCTCTACATGCTGTCGATCCTGCTACCGGTCCTACTGCA
581 -G--A-C--GGCA-CAG--CGATCCCCCTCTACATGCTGTCGATCCCGCTACCGGTCCTACTGCA
* * *
18822297 ACGACCTTCGGTCTAGCATAGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATAAGCGTGCA
637 ACAACCTTCGGTCTAGCATAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCA
*** * * * * *
18822362 GGCACTCAATGGGTCGGAAAGGCAGAATGTGCAAGCTGGGGATCGACTCAGTCCCCCTCTGCGTG
702 GGCACTCAATGCAACCGAAAGGCAGAATGCGCAAGCCGGGAATCGACTCAGTCCCCCTCTACGTG
* * *
18822427 CTGTCGATCCTACTGCTGGTCCTACTGTCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAAT
767 CTGCCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAAT
18822492 GAACTCCGTAA
832 GAACTCCGTAA
*
18822503 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
18822568 TCGGTCAGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCCTACGTGCTGTCGATC
66 CCGGTCAGAGAGGCAGAATGTGCAAGTCGAGGATCGACCCGAT-CCCCCCTGCGTGCTGTCGATC
* **
18822633 CTACTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCATATGCCTAAGTCA
130 CTACT--CGCAACCCTCGGTCCGGTCTGATCTTAGACTG-GAATGAACTCTGTATGCCTAAGTCA
* * * * * * * *
18822698 ACCCATGAAATGAGCGTACGGGCACTGAGCCGACCGGATAGGCATAATGTGCAATCCGGAGATTG
192 ACCCACGAAACGAGCGTGCGGGCACTGAGCCG-CC-GAGAGGCATAATGCGCAAGCCGGGGATCG
* ** * * * *
18822763 GCCCGGTCTTCCTCTGCGTGCTGCCGGTCCCGCTGCCACAGCCCTCGATCCGGCTGGGGCTTAGA
255 G-CCAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGA
* * * * * * * *
18822828 CATGGAATGAGCTCCCTATGACTAAGCCAACCCACGAAACGGGCATGCAGGCCCTTACCCGGTCG
319 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGCCG
* * * * * **
18822893 GAGAGGCAGAATGCGCAAGCCGAGGATCAACTCAGTCCCCCCCTATGTGCTGTCGATCCTGCTAC
384 GAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGT-CCCCCCTGCGTGCTGTCGATCCTGCTAC
* * *
18822958 CGCAACCCTCGGTCCAATTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTAGGGATGA
448 CGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGA
**
18823023 ACTCCGTATGAGTAAGTCAACCCATGAAA
513 ACTCCGTATGCCTAAGTCAACCCATGAAA
18823052 TGAGCGTACG
Statistics
Matches: 1180, Mismatches: 190, Indels: 61
0.82 0.13 0.04
Matches are distributed among these distances:
849 2 0.00
850 381 0.32
851 5 0.00
852 1 0.00
853 104 0.09
854 261 0.22
855 28 0.02
856 1 0.00
857 2 0.00
858 233 0.20
859 114 0.10
860 3 0.00
861 3 0.00
864 4 0.00
865 38 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (842 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGGTCAGAGAGGCAGAATGTGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TACTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCTGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCACTGAGCCGCCGAGAGGCATAATGCGCAAGCCGGGGATCGGCCAGT
CCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAA
TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGCCGGAGAGGT
AGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCC
TCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTA
TGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAGCCGGTCGGAGAGGAATAATAGACGG
CACAGCGATCCCCCTCTACATGCTGTCGATCCCGCTACCGGTCCTACTGCAACAACCTTCGGTCT
AGCATAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCACTCAATGCAA
CCGAAAGGCAGAATGCGCAAGCCGGGAATCGACTCAGTCCCCCTCTACGTGCTGCCGATCCTACT
GCTGGTCCTACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAA
Found at i:18822516 original size:26 final size:26
Alignment explanation
Indices: 18822478--18822527 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18822468 CCAGTCCAAT
18822478 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
18822504 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
18822528 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:18823754 original size:26 final size:26
Alignment explanation
Indices: 18823716--18823768 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18823706 GGCTCAAAAT
18823716 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18823742 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
18823768 C
1 C
18823769 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18824077 original size:159 final size:157
Alignment explanation
Indices: 18823900--18824262 Score: 395
Period size: 159 Copynumber: 2.3 Consensus size: 157
18823890 CCGGTCCAAT
** ** * * *
18823900 CTTAGACTAGGAATGAACTCTTTATGCATAAGTTAACCCATGAAACGAGCGTGTGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTAAGC
* * * ** * * * *
18823965 CGGTCGAACAGGCATAATGCATAAGCCGGGGATAGGCTCGGTCCCCCTCTGCGTGCTGCCGGTCC
65 CAGTCGAACAGGCAGAATGCAAAAGCCAAGGATAGGCCCAGTCCCCC-CTGCGTGCTACCGATCC
**
18824030 TGCTACCACAACCCTCAGTCTGGCTGGGG
129 CACTACCACAACCCTCAGTCTGGCTGGGG
* * *
18824059 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGTGCTAAGC
1 CTTAGAC-TGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTAAGC
* * * * * *
18824124 CAGTCGGAGAGGTAGAATGCAAAAGTCAAGGATCGGCCCAGTCCCCCCTGTGTGCTACCGATCCC
65 CAGTCGAACAGGCAGAATGCAAAAGCCAAGGATAGGCCCAGTCCCCCCTGCGTGCTACCGATCCC
* **
18824189 ACTGCCATGACCCTCAGTCTGGCTGGGG
130 ACTACCACAACCCTCAGTCTGGCTGGGG
*
18824217 CTTAGACGTGGAATGAACTCCCTATG-ACTAAGCCAACCCACAAAAC
1 CTTAGAC-TGGAATGAACTCCCTATGCA-TAAGCCAACCCACGAAAC
18824263 AGGCATACAG
Statistics
Matches: 168, Mismatches: 34, Indels: 5
0.81 0.16 0.02
Matches are distributed among these distances:
158 79 0.47
159 88 0.52
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTAAGCC
AGTCGAACAGGCAGAATGCAAAAGCCAAGGATAGGCCCAGTCCCCCCTGCGTGCTACCGATCCCA
CTACCACAACCCTCAGTCTGGCTGGGG
Found at i:18824361 original size:158 final size:158
Alignment explanation
Indices: 18824005--18824336 Score: 371
Period size: 158 Copynumber: 2.1 Consensus size: 158
18823995 GATAGGCTCG
* *
18824005 GTCCCCCTCTGCGTGCTGCCGGTCCTGCTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGG
1 GTCCCCC-CTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGG
* * * * * * * *
18824070 AATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGTGCTAAGCCAGTCGGAGAG
65 AATGAACTCCCTATGACTAAGCCAACCCACAAAACAGGCATACAGGTGCTAAGCCAGCCGGAGAG
** * *
18824135 GTAGAATGCAAAAGTCAAGGATCGGCCCA
130 CCAGAATACAAAAGCCAAGGATCGGCCCA
* ** * ** *
18824164 GTCCCCCCTGTGTGCTACCGATCCCACTGCCATGACCCTCAGTCTGGCTGGGGCTTAGACGTGGA
1 GTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGA
* *
18824229 ATGAACTCCCTATGACTAAGCCAACCCACAAAACAGGCATACAGG-GCATTCAG-CAGGCCGGAT
66 ATGAACTCCCTATGACTAAGCCAACCCACAAAACAGGCATACAGGTGC--TAAGCCA-GCCGGAG
* * *
18824292 AGCCAGAATACACAAGCCGAGGATCGGCCCG
128 AGCCAGAATACAAAAGCCAAGGATCGGCCCA
*
18824323 GTCCCTCCTGCGTG
1 GTCCCCCCTGCGTG
18824337 TGTTGATTCT
Statistics
Matches: 142, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 2 0.01
158 89 0.63
159 51 0.36
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
GTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGA
ATGAACTCCCTATGACTAAGCCAACCCACAAAACAGGCATACAGGTGCTAAGCCAGCCGGAGAGC
CAGAATACAAAAGCCAAGGATCGGCCCA
Found at i:18824847 original size:159 final size:160
Alignment explanation
Indices: 18824585--18825087 Score: 473
Period size: 160 Copynumber: 3.2 Consensus size: 160
18824575 CGGCTGGGGA
* * * * **
18824585 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGAGCTT-AGT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTGAAC
* ** * * * * * * *
18824649 CGACCAGAGAGGTAGAATGCGTAATCCGGGGATTAACCCGATCCCTCCCTGCATGTTGTCGATCT
66 CGGCTGGAGAGGTAGAATGCGCAAGCCAGGGATTGACCCGATCCCTCCCTACGTGTTGTCGATCC
** *
18824714 TGCTGCTGCAACCCTCGGTCTGATCTGATC
131 TGCTGCCACAACCCTCAGTCTGATCTGATC
18824744 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG-TTGAA
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTGAA
* * * * * *
18824807 CCGGCTGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCTCTCTATGTGTTGTCGGT
65 CCGGCTGGAGAGGTAGAATGCGCAAGCCAGGGATTGACCCGAT-CCCTCCCTACGTGTTGTCGAT
** * * **
18824872 CCCACTGCCACAACCCTCAGTC-CAACTAGGGC
129 CCTGCTGCCACAACCCTCAGTCTGATCT-GATC
* * * * * * *
18824904 TTAGACATGGATTGAACTCCCTATGCCTAAGTCAACCCACAAAATGGGCATGCGAGCGCTCG-AC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTGAAC
* * * * * * * *
18824968 CGG-TCGGAGAGGTAGAATGAGCATGTCAGGGATTGGCCTGGTCTC-CCCTACGTGCTGTCGATC
66 CGGCT-GGAGAGGTAGAATGCGCAAGCCAGGGATTGACCCGATCCCTCCCTACGTGTTGTCGATC
* *
18825031 CTGCTGCCATAACCCTCAGTCTGGTCTGATC
130 CTGCTGCCACAACCCTCAGTCTGATCTGATC
18825062 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
18825088 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 62, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 59 0.22
159 93 0.34
160 117 0.43
161 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (160 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTGAAC
CGGCTGGAGAGGTAGAATGCGCAAGCCAGGGATTGACCCGATCCCTCCCTACGTGTTGTCGATCC
TGCTGCCACAACCCTCAGTCTGATCTGATC
Found at i:18825097 original size:26 final size:26
Alignment explanation
Indices: 18825061--18825113 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18825051 CTGGTCTGAT
18825061 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18825087 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18825113 C
1 C
18825114 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18832238 original size:158 final size:157
Alignment explanation
Indices: 18831719--18832271 Score: 538
Period size: 158 Copynumber: 3.5 Consensus size: 157
18831709 ACTCCGTATG
** ** *
18831719 CTTAGACAT-GGAATGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTATGGGCGCTTAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * *
18831783 TCGACCGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCC
65 CCGGCCGAAGAGGCAGAATGCACAAACCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
* *
18831848 TGCTGCTGCAACCCTCGATCTGATCCGAT
130 TGCTGCCGCAACCCTCGATCT-ATCTGAT
* * * * * *
18831877 CTTAGACTGGGAATGTACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTCCGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
18831942 CGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCACCCTCTGCATGCTGTCGATCC
66 CGGCCGAAGAGGCAGAATGCACAAACCGGGGATCGACCCGATC-CCCCCTGCATGCTGTCGATCC
* * * ** **
18832007 CGCTGCCACAACCCTCGGTCTGGCTGGGG
130 TGCTGCCGCAACCCTCGATCTATCT-GAT
* * * * * *
18832036 CTTAGACAT-GGAATTAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
18832100 CC-GCTCGAAGAGGCAGAATGCACAAACCGGGGATCGACCCAATCCCCCCTGCGTGCT-ACGGAT
65 CCGGC-CGAAGAGGCAGAATGCACAAACCGGGGATCGACCCGATCCCCCCTGCATGCTGTC-GAT
* *
18832163 CCTGCTTCCGTAACCCTCGATCTCATCTGAT
128 CCTGCTGCCGCAACCCTCGATCT-ATCTGAT
* ** * *
18832194 CTTAGATTGGGAATGAACTGTGTATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCGCTCAGT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
18832259 CGGCCGTAGAGGC
66 CGGCCGAAGAGGC
18832272 CGATCGGAGA
Statistics
Matches: 317, Mismatches: 69, Indels: 18
0.78 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 186 0.59
159 127 0.40
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCACAAACCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCT
GCTGCCGCAACCCTCGATCTATCTGAT
Found at i:18832586 original size:26 final size:26
Alignment explanation
Indices: 18832548--18832600 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18832538 TCGATCCGAT
18832548 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18832574 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18832600 C
1 C
18832601 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18834516 original size:26 final size:26
Alignment explanation
Indices: 18834465--18834517 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18834455 GGGTCAAAAT
*
18834465 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18834491 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18834517 C
1 C
18834518 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18834970 original size:26 final size:26
Alignment explanation
Indices: 18834929--18834981 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18834919 CCAGTCCGAT
* *
18834929 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18834955 CTTAGACTGTGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
18834981 C
1 C
18834982 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18835332 original size:25 final size:26
Alignment explanation
Indices: 18835295--18835346 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
18835285 CTGGTCCGAT
18835295 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18835320 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
18835346 C
1 C
18835347 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18835549 original size:197 final size:195
Alignment explanation
Indices: 18835125--18835651 Score: 619
Period size: 197 Copynumber: 2.7 Consensus size: 195
18835115 TTCGGCTGGG
* * * *
18835125 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * ** *
18835190 CCGGTTGGAGAGGAAAAATGCGCAAGCCGGCGATTGACTCGATCCCTTCTGCGTGCTATCGATCC
66 CCGATCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
18835255 TGCTT--TGGTCCTACAGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTA
131 TG-TTGCTGGTCCTACAGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCGTA
18835318 T
195 T
* * *
18835319 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
18835384 TCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCACCCCCTGCGTGCTGTCGATC
66 CCGATCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGGTC-CCCCCTGCGTGCTGTCGATC
* * * * *
18835449 CTGTTGCTGGTCTTGCTA-CCGTAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTTTG
130 CTGTTGCTGGTCCTAC-AGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAAC-TCG
18835513 TAT
193 TAT
* * * *
18835516 TCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
18835581 CCGACCGGAGAGGTAGAATGAGCAAGCTGAGGACCGGCCCAGTCCCCCCTGCATGCTGTCGATCC
66 CCGATCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
18835646 TGTTGC
131 TGTTGC
18835652 CGCAACCCTC
Statistics
Matches: 280, Mismatches: 48, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
194 93 0.33
195 20 0.07
196 70 0.25
197 97 0.35
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TGTTGCTGGTCCTACAGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCGTAT
Found at i:18835930 original size:159 final size:157
Alignment explanation
Indices: 18835517--18835955 Score: 415
Period size: 159 Copynumber: 2.8 Consensus size: 157
18835507 ACTTTGTATT
18835517 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCT-G
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA-AAAACGAGCGTGCGGGCGCT-TAG
* * *
18835581 CCGACCGGAGAGGTAGAATGAGCAAGCT-GAGGACCGGCCCAGTCCCCCCTGCATGCTGTCGATC
64 CCGACCGGAGAGGCAGAATGCGCAAGCTAG-GGATCGGCCCAGTCCCCCCTGCATGCTGTCGATC
* * * * *
18835645 CTGTTGCCGCAACCCTCGATCCGGTCTGAT
128 CCGCTGCCACAACACTCGATCCGGTCTGAG
* * * * * * * * *
18835675 CATGGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCA-AAAACGAGCGTGCGGGCGCTTAG
** * * * * * * **
18835739 CCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATTGG-CCTGATCCCCCTTTGTGTGCTGTCGAT
64 CCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCAG-TCCCCC-CTGCATGCTGTCGAT
* *
18835803 CCCGCTGCCACAACACTCGGTCCGG-CTGGGG
127 CCCGCTGCCACAACACTCGATCCGGTCT-GAG
* * *
18835834 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGTGCTTAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA-AAAACGAG-CGTGCGGGCGCTTAG
* * *
18835898 CCAACCGGAGAGGCAGATTGCGCAAGCTAGGGATCGGCTC-GTTCCCCCCTGCATGCTG
64 CCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCAG-TCCCCCCTGCATGCTG
18835956 CCAATCCTGT
Statistics
Matches: 218, Mismatches: 54, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 94 0.43
159 118 0.54
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAAAACGAGCGTGCGGGCGCTTAGCC
GACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCCCG
CTGCCACAACACTCGATCCGGTCTGAG
Found at i:18836033 original size:26 final size:26
Alignment explanation
Indices: 18835993--18836043 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18835983 CAGTCTGATC
18835993 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
18836019 TTAGACTAGGG-ATGAACTCCGTATG
1 TTAGACT-GGGAATGAACTCCGTATG
18836044 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:18836755 original size:26 final size:26
Alignment explanation
Indices: 18836717--18836769 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18836707 GGCTCAAACT
18836717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18836743 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18836769 C
1 C
18836770 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18837035 original size:158 final size:156
Alignment explanation
Indices: 18836742--18837044 Score: 362
Period size: 158 Copynumber: 1.9 Consensus size: 156
18836732 AACTCCGTAT
** *
18836742 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAACCGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAACCGAGCGTGCGGGCGCTCAG
* * * * * * *
18836807 CCGGTCGGAGATGCGGAATATGCAAGTTAGGGATTAGCCCGGTCCCCCTTGCGTGCTGCTGGTCT
66 CC-G-CGGAGAGGCAGAATACGCAAGTCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGCTGATCT
18836872 CACTGCCACAACCCTCAGTCCAGCTGGG
129 CACTGCCACAACCCTCAGTCCAGCTGGG
* * *
18836900 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAACCGAG-CGTGCGGGCGCTC-
* *
18836964 ATGCAC-CGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTG-TCGA
64 A-GC-CGCGGAGAGGCAGAATACGCAAGTCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGCT-GA
*
18837027 TC-CTACTGCCGCAACCCT
126 TCTC-ACTGCCACAACCCT
18837045 TGGACCGGTT
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
157 3 0.02
158 116 0.94
159 1 0.01
160 2 0.02
161 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAACCGAGCGTGCGGGCGCTCAG
CCGCGGAGAGGCAGAATACGCAAGTCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGCTGATCTCA
CTGCCACAACCCTCAGTCCAGCTGGG
Found at i:18837088 original size:26 final size:26
Alignment explanation
Indices: 18837059--18837111 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18837049 CCGGTTCGAT
18837059 CTTAGAC-TCAGAATGAACTTCGTATG
1 CTTAGACAT-AGAATGAACTTCGTATG
*
18837085 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATAGAATGAACTTCGTATG
18837111 C
1 C
18837112 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTTCGTATG
Found at i:18837209 original size:184 final size:187
Alignment explanation
Indices: 18836900--18837464 Score: 553
Period size: 196 Copynumber: 3.0 Consensus size: 187
18836890 TCCAGCTGGG
* *
18836900 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTC-
*
18836964 ATGCA-CCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGAT
64 A-GCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGAT
* * * * *
18837028 -C-C-TACTGC-CGCAACCCTTGGA-CCGGTTCGATCTTAGACTCAGAATGAACTTCGTAT
128 CCGCGTACTGCTCGCAACCC-TCGATCCGGTCCAATCTTAGACTCAGAATGAACTCCATAT
* * *
18837084 GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
18837149 CAAGCCGGAGAGGCAGAATGCGCAAGTCGGGGAT-TGACCCGGTCCCCCCTTCATGCTGTCGATC
66 C-AGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAG-CCCGGTCCCCCCTGCATGCTGTCGATC
* * **
18837213 CTGCTGTTGGTATTGCTTTTGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCAT
129 C-GC-----GTACTGC--TCGCAACCCTCGATCCGGTCCAATCTTAGACTCAGAATGAACTCCAT
18837278 AT
186 AT
*
18837280 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC-A
* * * **** * * * * * * *
18837345 CCAGCCAGAGAGGTAGAATAAAAAACT-AGGGACCAGCTCGATCCCCCCTACATGCTATCGATCC
65 GCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATCC
* * * * ** *
18837409 -TGT--TACT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 GCGTACTGCTCGCAACCCTCGATCCGGTCCAATCTTAGACTCAGAATGAACTCCATAT
18837463 GC
1 GC
18837465 CTAAGTCAAC
Statistics
Matches: 321, Mismatches: 41, Indels: 39
0.80 0.10 0.10
Matches are distributed among these distances:
182 2 0.01
183 49 0.15
184 111 0.35
185 2 0.01
186 2 0.01
187 1 0.00
188 2 0.01
193 5 0.02
195 31 0.10
196 114 0.36
197 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (187 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATCCG
CGTACTGCTCGCAACCCTCGATCCGGTCCAATCTTAGACTCAGAATGAACTCCATAT
Found at i:18837284 original size:26 final size:26
Alignment explanation
Indices: 18837255--18837307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18837245 CCGGTCCAAT
18837255 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
18837281 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
18837307 C
1 C
18837308 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:18837924 original size:184 final size:184
Alignment explanation
Indices: 18837665--18838001 Score: 442
Period size: 184 Copynumber: 1.8 Consensus size: 184
18837655 CTCAATCAGT
* * *** *
18837665 CAGAGAGGCAGAATGCGTAAGCCAGGGATCGACCTGATCCCCCATGCGTGCTGCTGTTCCTAGTA
1 CAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCATGCATGCTGCCAATCCTACTA
* * *
18837730 CCGCAACCCTCTG-TTCGGTCCGATCTTGGACTGGAAATGAACTCCATATGCTTAGACTAGGGAT
66 CCGCAACCCTC-GATCCGATCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTAGGGAT
*
18837794 AAACTCCGTATGCCTAAGTCAACCAACGAAACGAACGTGTGCGCACTCAGCCGAC
130 AAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTGTGCGCACTCAGCCGAC
* * * * *
18837849 CAGAGAGGCAGGATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCATGCTGCCAATCCTACTG
1 CAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCATGCATGCTGCCAATCCTACTA
* * * * ** * *
18837914 TCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATG
66 CCGCAACCCTCGATCCGATCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTAGGGATA
*
18837979 AACTCCTTATGCCTAAGCCAACC
131 AACTCCGTATGCCTAAGCCAACC
18838002 CGTGAAACGA
Statistics
Matches: 128, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
183 1 0.01
184 127 0.99
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
CAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCATGCATGCTGCCAATCCTACTA
CCGCAACCCTCGATCCGATCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTAGGGATA
AACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTGTGCGCACTCAGCCGAC
Found at i:18838011 original size:184 final size:184
Alignment explanation
Indices: 18837665--18838040 Score: 441
Period size: 184 Copynumber: 2.0 Consensus size: 184
18837655 CTCAATCAGT
* * *** *
18837665 CAGAGAGGCAGAATGCGTAAGCCAGGGATCGACCTGATCCCCCATGCGTGCTGCTGTTCCTAGTA
1 CAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCATGCATGCTGCCAATCCTACTA
* * *
18837730 CCGCAACCCTCTGTTCGGTCCGATCTTGGACTGGAAATGAACTCCATATGCTTAGACTAGGGATA
66 CCGCAACCCTCTGTCCGATCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTAGGGATA
* *
18837795 AACTCCGTATGCCTAAGTCAACCAACGAAACGAACGTGTGCG-CACTCAGCCGAC
131 AACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTATG-GACACTCAGCCGAC
* * * * *
18837849 CAGAGAGGCAGGATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCATGCTGCCAATCCTACTG
1 CAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCATGCATGCTGCCAATCCTACTA
* * * * ** *
18837914 TCGTAACCCTC-GATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGAT
66 CCGCAACCCTCTG-TCCGATCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTAGGGAT
* * *** * *
18837978 GAACTCCTTATGCCTAAGCCAACCCGTGAAACGAGCGTATGGACGCTCAGCCGAC
130 AAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTATGGACACTCAGCCGAC
*
18838033 CGGAGAGG
1 CAGAGAGG
18838041 TTGACCGGAG
Statistics
Matches: 159, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
183 2 0.01
184 157 0.99
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
CAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCATGCATGCTGCCAATCCTACTA
CCGCAACCCTCTGTCCGATCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTAGGGATA
AACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTATGGACACTCAGCCGAC
Found at i:18838706 original size:158 final size:157
Alignment explanation
Indices: 18838345--18838759 Score: 372
Period size: 158 Copynumber: 2.6 Consensus size: 157
18838335 CTCCGTATGC
* * ** *
18838345 TTAGACATGGAATGAACTACATATGCCTAAGCCAACCCACAAAATGAGCGTTCGGGCATTCAACT
1 TTAGACATGGAATGAACTACATATGCCTAAGCCAACCCAC-AAACGAGCGTACGGGCGCTCAACC
* * * *
18838410 GACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTG
65 GACCAGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCCG
* * * **
18838475 CTACCGCAACCCTCGATCCGATTCGATC
130 CTACCACAACCCTCGATCCAACTCGAAA
*** * * * *
18838503 TTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCATCAAACGAGCGTACAGGCGCTGAGC
1 TTAGACAT-GGAATGAACTACATATGCCTAAGCCAACCCA-CAAACGAGCGTACGGGCGCTCAAC
* ** * * * *
18838567 CGGCCAGAGAGGCCTAATGCGTAAG-TCGAGGATCGACTCGGTCCCCCCTGCATGCTGCCGGTCC
64 CGACCAGAGAGGCAGAATGCGCAAGCT-GAGGATCGACCCGATCCCCCCTGCATGCTGCCGATCC
** *
18838631 CGCTGTCACAACCCTCAGA-CCAACTGGAAA
128 CGCTACCACAACCCTC-GATCCAACTCGAAA
* * * *
18838661 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACC
1 TTAGACATGGAATGAACTACATATGCCTAAGCCAACCCAC-AAACGAGCGTACGGGCGCTCAACC
* * * *
18838726 TG-CC-GAAGATGTAGAATGCGCAAGCCGGGGATCG
65 -GACCAG-AGAGGCAGAATGCGCAAGCTGAGGATCG
18838760 GCCTGAACCC
Statistics
Matches: 201, Mismatches: 47, Indels: 18
0.76 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 192 0.96
159 5 0.02
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (157 bp):
TTAGACATGGAATGAACTACATATGCCTAAGCCAACCCACAAACGAGCGTACGGGCGCTCAACCG
ACCAGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCCGC
TACCACAACCCTCGATCCAACTCGAAA
Found at i:18839226 original size:26 final size:26
Alignment explanation
Indices: 18839188--18839240 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18839178 CCGGTCTGAT
18839188 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18839214 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18839240 C
1 C
18839241 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18840735 original size:159 final size:157
Alignment explanation
Indices: 18840433--18841367 Score: 557
Period size: 159 Copynumber: 5.8 Consensus size: 157
18840423 AACTTCGTAT
* * * * *
18840433 GCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGCGTACCGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * **
18840498 CCGGCC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGTTCCCCCCTTGTGTGCTGTCAAT
66 CCGACCGA-AGAGGCAGAATGCGCAAG-CTGGGATCGACCCGATCCCCCC-TACGTGCTGTCAAT
* * *
18840562 CCTGCTGCCACAACCCTCAATCC-GGTCT-GA
128 CCCGCTACCACAACCCT-AAGCCTGG-CTGGA
* * * *
18840592 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * *
18840656 GCCTACCGAAGAGGCATAATGCGCAAGCTGGGAATCAACCCGATCCCCCTCTACGTGCTGTCAGT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCTGGG-ATCGACCCGATCCCCC-CTACGTGCTGTCAAT
* * *
18840721 CCCGCTACCGCAACCCTTAGCCTGGCTGGG
128 CCCGCTACCACAACCCTAAGCCTGGCTGGA
* * *
18840751 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
18840816 CCGATCGGAGAGGTAGAATGCGCAAG-TCGAGGATCGACCC-AGTCCCCCCTACGTGCTGTCGCA
66 CCGACCGAAGAGGCAGAATGCGCAAGCT-G-GGATCGACCCGA-TCCCCCCTACGTGCTGT--CA
* * * * ** * *
18840879 ACCCTCGGT-CCGATTCAATCTTAGATTGGGAATGAACTCCGTA
126 ATCC-CGCTACC-A--CAACCCTA-A----GCCTG-GCT--GGA
* * * * *
18840922 TGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 -GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * * *
18840987 GCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGAT-GGCACGGTCCCCCCTGCGTGCTGTCGATC
65 GCCGACCGAAGAGGCAGAATGCGCAAG-CTGGGATCGACCCGATCCCCCCTACGTGCTGTCAATC
** * * * * * **
18841051 CTACTGCTACAACCCTCGATCC-GGTTTAA
129 CCGCTACCACAACCCT-AAGCCTGGCTGGA
* * * * ** * **
18841080 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCTCGAAACAAGCGTGTGGGCACAGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
** * * * * * * ** *
18841144 GCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACATGCTACCAGT
65 GCCGACCGAAGAGGCAGAATGCGCAAG-CTGGGATCGACCCGATCCCCC-CTACGTGCTGTCAAT
* * ** *
18841209 CCCACTGCC-CAAACCCTCGGTCC-GGTTGG-
128 CCCGCTACCAC-AACCCTAAG-CCTGGCTGGA
* * * * * * * **
18841238 GCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGCAGGCATTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
18841303 CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCG-CACCGATCCCCCCTGCGTGTTGTCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAG-CTGGGATCGAC-CCGATCCCCCCTACGTGCTGTCAATC
18841367 C
129 C
18841368 TGCTGCTGCA
Statistics
Matches: 600, Mismatches: 139, Indels: 76
0.74 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 90 0.15
158 127 0.21
159 236 0.39
160 12 0.02
161 4 0.01
163 5 0.01
164 1 0.00
166 6 0.01
168 5 0.01
169 7 0.01
171 20 0.03
172 85 0.14
173 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCTGGGATCGACCCGATCCCCCCTACGTGCTGTCAATCCC
GCTACCACAACCCTAAGCCTGGCTGGA
Found at i:18841401 original size:158 final size:156
Alignment explanation
Indices: 18840924--18841423 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 156
18840914 ACTCCGTATG
* **
18840924 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGCACTCAG
* * *
18840988 CCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATGGCA-CGGTCCCCCCTGCGTGCTGTCGATCC
64 CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGCACCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
18841052 TACTGCTACAACCCTCGATCCGGTTTAAT
129 TACTGCTACAACCCTCGGTCCGG-TTGAC
* * * * * **
18841081 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCTCGAAACAAGCGTGTGGGCACAGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAT-GAAACGAGCGTGCGGGCACTCAGC
** * * * * * *
18841146 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGC-CCGGTCCCCCTCTACATGCT-ACCAGT
65 CGACCGGAGAGGCAGAATGCGCAAGTCAGGGATC-GCACCGGTCCCCC-CTGCGTGCTGTCGA-T
* * **
18841209 CCCACTGC-CCAAACCCTCGGTCCGGTTGGG
127 CCTACTGCTAC-AACCCTCGGTCCGGTTGAC
* * * * *
18841239 CTTAGACAT-GGAATGATCTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGCAGGCATTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGCACTCAG
* *
18841303 CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGCACCGATCCCCCCTGCGTGTTGTCGATCC
64 CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGCACCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
18841368 TGCTGCTGCAATCCTCGGTCCAGTCTGAC
129 TACTGCTACAACCCTCGGTCCGGT-TGAC
18841397 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18841424 TTAGACATGG
Statistics
Matches: 272, Mismatches: 57, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 4 0.01
157 105 0.39
158 131 0.48
159 32 0.12
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCATGAAACGAGCGTGCGGGCACTCAGCC
GACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGCACCGGTCCCCCCTGCGTGCTGTCGATCCTA
CTGCTACAACCCTCGGTCCGGTTGAC
Found at i:18841435 original size:26 final size:26
Alignment explanation
Indices: 18841397--18841449 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18841387 CCAGTCTGAC
18841397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18841423 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18841449 C
1 C
18841450 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18841506 original size:499 final size:494
Alignment explanation
Indices: 18840409--18842020 Score: 1893
Period size: 499 Copynumber: 3.3 Consensus size: 494
18840399 GCTCAAAATG
* * *
18840409 TTAGATTGGGAATGAACTTCGTATGCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * *
18840474 CGGAATGAGCGTACCGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG
66 CGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCG
* * * * *
18840539 TTCCCCCCTTGTGTGCTGTCAATCCTGCTGCCACAACCCTCAATCCGGTCTGATCTTAGACTGGG
131 GTCCCCCC-TGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTTTGATCTTAGACTGGG
* ** ** *
18840604 AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTA-AGCCTACCGAAGA
195 AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC-AGAGCC-GGCGGAGA
* ** *
18840668 GGCATAATGCGCAAGCTGGGAATCAACCCGATCCCCCTCTACGTGCTGTCAGTCCCGCTACCGC-
258 GGCATAATGCGCAAGC-GGGGATCGGCCCGATCCCCCTCTACGTGCTATCAGTCCCGCT-CC-CA
** *
18840732 AACCCTTAG-CCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAA
320 AACCCTCGGTCC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * *
18840796 ACGGGCGTACGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGTCGAGGATCG-ACCCAGTC
384 ACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCG-GGATCGCACCGA-TC
* * *
18840860 CCCCCTAC----GT-G---CTG-T-CGCAACCCTCGGTCCGATTCAATC
447 CCCCCTGCGTGTGTCGATCCTGCTGCGCAACCCTCGGTCC-AGTCGATC
* *
18840899 TTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * *
18840964 TGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGAT-GGCACG
66 CGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCG
* * *
18841028 GTCCCCCCTGCGTGCTGTCGATCCTACTGCTACAACCCTCGATCCGGTTTAATCTTAGACTGGGA
131 GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTTTGATCTTAGACTGGGA
* * *
18841093 ATGAACTCCATATGCCTAAGTCAACCCTCGAAACAAGCGTGTGGGCACAGAGCCGGTCGGAGAGG
196 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACAGAGCCGG-CGGAGAGG
* * * *
18841158 CATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACATGCTACCAGTCCCACTGCCCAAAC
260 CATAATGCGCAAG-CGGGGATCGGCCCGATCCCCCTCTACGTGCTATCAGTCCCGCT-CCCAAAC
* * * *
18841223 CCTCGGTCCGG-TTGGGCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAATCCATGAAACGG
323 CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* **
18841287 GCGTGCAGGCATTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGCACCGATCCCCCC
388 GCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTC-GGGATCGCACCGATCCCCCC
* *
18841352 TGCGTGTTGTCGATCCTGCTGCTGCAATCCTCGGTCCAGTCTGACC
452 TGCGTG-TGTCGATCCTGCTGC-GCAACCCTCGGTCCAGTC-GATC
18841398 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * *
18841463 CAAAATGAGCGTGCGGGCGCTCAGCCAATCGGAGAGGCAGAATGCGCAAGCCATGGATCTGCCCA
66 CGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCG
* * * * * *
18841528 GTCCCCCCTGCGTGCTATTGATCTTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGA
131 GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTTTGATCTTAGACTGGGA
* * * * *
18841593 ATGAA-TTCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCACTGAGCCGGCGGAGAGGC
196 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACAGAGCCGGCGGAGAGGC
* * * * *
18841657 ATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTTTTCGTGCTATC-GATCCCGCTACCACAAC
261 ATAATGCGCAAG-CGGGGATCGGCCCGATCCCCCTCTACGTGCTATCAG-TCCCGCTCCCA-AAC
* * *
18841721 CCTCGGTCCGGCTGGGGCTTACACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACAG
323 CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* * * * * *
18841786 GCATGCGGGCGCTCAGCCGGCTGGAGAGGCATAATGCGCAAGCTGGGGATCGGC-CCGGTCCCCC
388 GCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG-TCGGGATC-GCACCGATCCCCC
** * *
18841850 CTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCCAGTCCGATC
451 CTGCGTG-TGTCGATCCTGCTG-CGCAACCCTCGGTCCAGT-CGATC
* * *
18841897 TTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCC
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* **
18841961 ACGAAACGAGCATGCGGGCGCTCAG-CGACCAAAGAGGCATG-ATGCGCAAGCC-GAGGATCG
65 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCA-GAATGCGCAAGCCAG-GGATCG
18842021 AACGAGTGGT
Statistics
Matches: 957, Mismatches: 134, Indels: 54
0.84 0.12 0.05
Matches are distributed among these distances:
487 103 0.11
488 166 0.17
489 15 0.02
490 110 0.11
492 2 0.00
493 1 0.00
496 3 0.00
497 5 0.01
498 99 0.10
499 384 0.40
500 69 0.07
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (494 bp):
TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCG
GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTTTGATCTTAGACTGGGA
ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACAGAGCCGGCGGAGAGGC
ATAATGCGCAAGCGGGGATCGGCCCGATCCCCCTCTACGTGCTATCAGTCCCGCTCCCAAACCCT
CGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCG
TGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGATCGCACCGATCCCCCCTGCG
TGTGTCGATCCTGCTGCGCAACCCTCGGTCCAGTCGATC
Found at i:18841570 original size:184 final size:183
Alignment explanation
Indices: 18841238--18841606 Score: 456
Period size: 184 Copynumber: 2.0 Consensus size: 183
18841228 GTCCGGTTGG
* * ** * *
18841238 GCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGCAGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
* * * *
18841303 CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGCACCGATCCCCCCTGCGTGTTGTCGATCC
66 CCAACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGCACCGATCCCCCCTGCGTGCTATCGATCC
** *
18841368 TGCTGCTGCAATCCTCGGTCCAG-TCTGACCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCACAACCCTCGGTCCAGTTC-GACCTTAGACTGGGAATGAA-TCCGTAT
* * * *
18841422 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
* * *
18841487 CCAATCGGAGAGGCAGAATGCGCAAGCCATGGATCTGC-CC-AGTCCCCCCTGCGTGCTATTGAT
66 CCAACCGGAGAGGCAGAATGCGCAAGCCAGGGATC-GCACCGA-TCCCCCCTGCGTGCTATCGAT
* ** * *
18841550 CTTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAATTCGTAT
129 CCTGCTGCCACAACCCTCGGTCCAGTTCGACCTTAGACTGGGAATGAATCCGTAT
18841605 GC
1 GC
18841607 CTAAGTTAAC
Statistics
Matches: 157, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
183 9 0.06
184 144 0.92
185 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
CCAACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGCACCGATCCCCCCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCGGTCCAGTTCGACCTTAGACTGGGAATGAATCCGTAT
Found at i:18841751 original size:157 final size:157
Alignment explanation
Indices: 18841422--18841922 Score: 575
Period size: 158 Copynumber: 3.2 Consensus size: 157
18841412 AACTCCGTAT
* *
18841422 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * * * *
18841487 CCAATCGGAGAGGCAGAATGCGCAAGCCATGGATCTGCCC-AGTCCCCCCTGCGTGCTATTGATC
66 CC-GGCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCCCTGCGTGCTATCGATC
* *
18841551 TTGCTGCCACAACCCTCGGTCTGGTTCGA
129 TTGCTGCCACAACCCTCGGTCCGGCTCGA
* ** * *
18841580 TCTTAGAC-TGGGAATGAA-TTCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * *
18841643 GCCGGCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTTTTCGTGCTATCGATC
65 GCCGGCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATC
** * * *
18841708 CCGCTACCACAACCCTCGGTCCGGCTGGG
129 TTGCTGCCACAACCCTCGGTCCGGCTCGA
* * *
18841737 GCTTACACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAA-CAGGCATGCGGGCGCTC
1 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGCGCTC
** * *
18841800 AGCCGGCTGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGAT
64 AGCCGGC-GGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGAT
*
18841865 CTTGCTGCCACAACCCTCGGTCCAG-TCCGA
128 CTTGCTGCCACAACCCTCGGTCCGGCT-CGA
* *
18841895 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTTCGTATGC
18841923 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 47, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
156 37 0.13
157 97 0.34
158 111 0.39
159 40 0.14
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCTT
GCTGCCACAACCCTCGGTCCGGCTCGA
Found at i:18841925 original size:26 final size:26
Alignment explanation
Indices: 18841896--18841948 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18841886 CCAGTCCGAT
18841896 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18841922 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18841948 C
1 C
18841949 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18842655 original size:26 final size:26
Alignment explanation
Indices: 18842617--18842669 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18842607 GGCTCAAAAT
18842617 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18842643 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18842669 C
1 C
18842670 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18843026 original size:159 final size:158
Alignment explanation
Indices: 18842642--18843093 Score: 416
Period size: 158 Copynumber: 2.9 Consensus size: 158
18842632 AACTCCGTAT
* * * *
18842642 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGCGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
18842707 CCGACCAGAGAGGCAGAACGCGCAAGGCGGAGATCGACCCGGTCCCCCCTTACGTGCTGTCGATC
66 CCGGCCAGAGAGGCAGAACGCGCAAGGCGGAGATCGACCCGGTCCCCCCTTACGTGCTGTCGATC
* ** *
18842772 CTACTGTGCAACCCTCGGTCCGATCTGA
131 CCACTGCACAACCCTCAGTCCGATCTGA
* * * * ** *
18842800 TCTTACAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
18842864 GCCGGCC-GAAGAGGCATAATGCGCAAGGCAGG-GATTGGCCCGGTCCCCCGC-TGCGTGCTGTT
65 GCCGGCCAG-AGAGGCAGAACGCGCAAGGC-GGAGATCGACCCGGTCCCCC-CTTACGTGCTGTC
* * * *
18842926 GGTCCCGCTGCCACAACCCTCAGTCTGA-CTGGG
127 GATCCCACTG-CACAACCCTCAGTCCGATCT-GA
* * * *
18842959 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*** * * * * * *
18843024 CCGGTTGGAGTGACAGAATGCGCAA-GCCGAGGATC-AGCCTGATCCCCCC-TACGTGCTGTCGA
66 CCGGCCAGAGAGGCAGAACGCGCAAGGCGGA-GATCGA-CCCGGTCCCCCCTTACGTGCTGTCGA
*
18843086 TCCTACTG
129 TCCCACTG
18843094 TCGTAACCCT
Statistics
Matches: 231, Mismatches: 52, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 127 0.55
159 99 0.43
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGAGGCAGAACGCGCAAGGCGGAGATCGACCCGGTCCCCCCTTACGTGCTGTCGATC
CCACTGCACAACCCTCAGTCCGATCTGA
Found at i:18844343 original size:26 final size:26
Alignment explanation
Indices: 18844314--18844366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18844304 CCGATCCAAT
18844314 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18844340 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18844366 C
1 C
18844367 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18844847 original size:159 final size:159
Alignment explanation
Indices: 18844495--18844904 Score: 360
Period size: 159 Copynumber: 2.6 Consensus size: 159
18844485 CTACTGGTCT
* * * * *
18844495 TGCTACCACAATCCTCGGT-TCGACTGGGGTTTAGGCTTAGAATGAACTCCATATGCCTAAGCCA
1 TGCTACCACAACCCTCGGTCT-GGCTGGGGTTTAGACTGAGAATGAACTCCATATGCATAAGCCA
** * * **
18844559 ACCCGTGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGGGCAAGCCCGAGGACC
65 ACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCCGAGGACC
* * * **
18844624 AGTCTGGTCCCCCCTGCGTTCTGTCGATCC
130 AGCCCGGTCCCCCCTGCGTGCTACCGATCC
** * * * * * ** * * *** *
18844654 TGCTGTCGCAACTCTCGATC-CGATCCGATCTTAGACTGGGAATGAACTTTGTATGCATAAGTCA
1 TGCTACCACAACCCTCGGTCTGGCTGGGGT-TTAGACTGAGAATGAACTCCATATGCATAAGCCA
* * * *
18844718 ACCCACGAAACGAGCGTGCGGGTGCTGAACCGACCGGAGAGGCATAATGCACAAGCCTG-GGATC
65 ACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCCGAGGACC
*
18844782 GGCCCGGTCCCCCTCTGCGTGCTACCGATCC
130 AGCCCGGTCCCCC-CTGCGTGCTACCGATCC
* * * *
18844813 TGCTACCACAACCCTCGGTCTGGCTGGGGTTTAGACATG-GAGTGAACTCCCTATGCCTAACCCA
1 TGCTACCACAACCCTCGGTCTGGCTGGGGTTTAGAC-TGAGAATGAACTCCATATGCATAAGCCA
* * * *
18844877 ACGCACGAAACGGGCATGCGGGCGCTCA
65 ACCCACGAAACGAGCGTGCGGGTGCTCA
18844905 GCCTGTTGGA
Statistics
Matches: 188, Mismatches: 58, Indels: 10
0.73 0.23 0.04
Matches are distributed among these distances:
158 17 0.09
159 165 0.88
160 6 0.03
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
TGCTACCACAACCCTCGGTCTGGCTGGGGTTTAGACTGAGAATGAACTCCATATGCATAAGCCAA
CCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCCGAGGACCA
GCCCGGTCCCCCCTGCGTGCTACCGATCC
Found at i:18845747 original size:26 final size:26
Alignment explanation
Indices: 18845709--18845761 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18845699 GGCTCAAAAT
*
18845709 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18845735 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18845761 C
1 C
18845762 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18846128 original size:159 final size:158
Alignment explanation
Indices: 18845737--18846235 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 158
18845727 TCTGTATGCT
* * *
18845737 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
1 TAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * * *
18845802 GTCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTATGTGCTGTCGATCCTAC
66 ACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTAC
* * *
18845867 TGCCACAATCCTCGATCCAACCCAATCT
131 TGCCACAACCCTCGATCCAACCCAAGCA
* ** * *
18845895 TAGAC-TGGGAATGAACTCCATATG-CATAAGTCAACCCACGAAACGAGCGTGCGACCGTTGAGC
1 TAGACAT-GGAATGAACTCCATATGCCA-AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18845958 CAACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCCCTCTACGTGCTGTTGATCC
64 CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCC
* * * * *
18846023 TGCTGCCACAACCCTCGGTCCGA-CTAGGGCA
128 TACTGCCACAACCCTCGATCCAACCCA-AGCA
* *
18846054 TAGACATGGAATGAACTTCC-TATGCCAAAGCCAACCCATGGAACGCA-CGTGCGGGCGCTCAGC
1 TAGACATGGAATGAAC-TCCATATGCCAAAGCCAACCCACGAAACG-AGCGTGCGGGCGCTCAGC
* * * ** ** * *** *
18846117 TGACCGGAGAGGCAGAA-GCACAAGTAGGGGATCAACCCGGTCCCCCCTGTATGCTGTCGATCTT
64 CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
* * * * ** * * *
18846181 GCTGTCGCAACCCTCGGTCCAGTCCGATCT
129 ACTGCCACAACCCTCGATCCAACCCAAGCA
18846211 TAGAC-TGGGAATGAACTCCATATGC
1 TAGACAT-GGAATGAACTCCATATGC
18846236 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 58, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.01
157 53 0.19
158 115 0.42
159 93 0.34
160 7 0.03
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
ACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTAC
TGCCACAACCCTCGATCCAACCCAAGCA
Found at i:18846238 original size:26 final size:26
Alignment explanation
Indices: 18846209--18846261 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18846199 CCAGTCCGAT
18846209 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18846235 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18846261 C
1 C
18846262 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18846656 original size:343 final size:343
Alignment explanation
Indices: 18845893--18846678 Score: 969
Period size: 342 Copynumber: 2.3 Consensus size: 343
18845883 CCAACCCAAT
* * *
18845893 CTTAGACTGGGAATGAACTCC-ATATGCATAAGTCAACCCACGAAACGAGCGTGCGACCGT--TG
1 CTTAGACTGGGGATGAACTCCGA-ATGCATAAGTCAACCCACGAAACGAGCGTGC-A-GGTGCTA
* * **
18845955 AGCCA-AC-CGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCCCTCTACGTGCTGTT
63 AG-CAGACTCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGCG
* * * *
18846018 GATCCTGCTGCCACAACCCTCGGTCCGACTAGGGCATAGACATGGAATGAACTTCCTATGCCAAA
127 GAACCTCCAGCCACAACCCTCGGTCCGACTAGGGCATAGACATGGAATGAACTCCCTATGCCAAA
* * ** * *
18846083 GCCAACCCATGGAACGCACGTGCGGGCGCTCAGCTGACCGGAGAGGCAGAAGCACAAGTAGGGGA
192 GCCAACCCACGAAACGCACGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAAGCACAAGCAGAGGA
* * *
18846148 TCAACCCGGTCCCCCCTGTATGCTGTCGATCTTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTA
257 TCAACCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTA
*
18846213 GACTGGGAATGAACTCCATATG
322 GACTGAGAATGAACTCCATATG
* * * * *
18846235 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTTCGGGCGCTAAGC
1 CTTAGACTGGGGATGAACTCCGAATGCATAAGTCAACCCACGAAACGAGCGTGCAGGTGCTAAGC
* * * ** * *
18846300 CG-GTCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATTGCCCTCTGCGTGTTGCCGGAA
66 AGACTCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTG-CGGAA
* * *
18846364 CC-CCAGCCACAACCCTCGGTCCTG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
130 CCTCCAGCCACAACCCTCGGTCC-GACTAGGGCATAGACATGGAATGAACTCCCTATGCCAAAGC
** * * ** *
18846427 CAACCCACGAAACGGGCGTGCGGGTGCTCAGCCAATCGGAGAGGCAGAATGCGTAAGCCGAGGAT
194 CAACCCACGAAACGCACGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAA-GCACAAGCAGAGGAT
** * *
18846492 CGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCGTCGGTCCGGTCCGATCTTAG
258 CAACCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAG
18846557 ACTGAGAATGAACTCCATATG
323 ACTGAGAATGAACTCCATATG
* * *
18846578 CTTAGACTGGGGATGAACTCCGAATGCCTAAGTCAACCCACGAAACGAGCATGCAGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGAATGCATAAGTCAACCCACGAAACGAGCGTGCAGGTGCTAAGC
* **
18846643 AGACTAG-AGAGGCAGGATGCGCAAGCCGGGGATCGA
66 AGACTCGAAGAGGCATAATGCGCAAGCCGGGGATCGA
18846679 ACGGGTGGTA
Statistics
Matches: 374, Mismatches: 61, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
340 1 0.00
341 1 0.00
342 193 0.52
343 177 0.47
344 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGAATGCATAAGTCAACCCACGAAACGAGCGTGCAGGTGCTAAGC
AGACTCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGCGGAAC
CTCCAGCCACAACCCTCGGTCCGACTAGGGCATAGACATGGAATGAACTCCCTATGCCAAAGCCA
ACCCACGAAACGCACGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAAGCACAAGCAGAGGATCAA
CCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACT
GAGAATGAACTCCATATG
Found at i:18847293 original size:26 final size:26
Alignment explanation
Indices: 18847255--18847307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18847245 GGCTCAAAAT
18847255 CTTAGACTAGGAAGGAACTCCGTATG
1 CTTAGACTAGGAAGGAACTCCGTATG
*
18847281 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAAGGAACTCCGTATG
18847307 C
1 C
18847308 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAGGAACTCCGTATG
Found at i:18847617 original size:159 final size:158
Alignment explanation
Indices: 18847449--18847742 Score: 338
Period size: 159 Copynumber: 1.9 Consensus size: 158
18847439 TCTTAGACTG
* * * * * * * *
18847449 GGAATGAACTACGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGTTGAGCGGACCGAAG
1 GGAACGAACTACCTATGCATAAGCCAACCCACAAAACGAGAGTGCGGGCGCTCAGCCGACCAAAG
* * * * *
18847514 AGGCATAATGCGCAAG-CTAGGGATCGGCTCGGTCCCCCTCTACATGCTGCCGGTCCAGCTGCCA
66 AGGCAGAATACGCAAGTC-AGGGATCGGCCCGATCCCCC-CTACATGCTGCCGATCCAGCTGCCA
18847578 CAACCCTTGATCTGACTAGGGCATAGATAT
129 CAACCCTTGATCTGACTAGGGCATAGATAT
* * ** * *
18847608 GGAACGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGAGTGCGGGCGCTCAGCCGACCAAAG
1 GGAACGAACTACCTATGCATAAGCCAACCCACAAAACGAGAGTGCGGGCGCTCAGCCGACCAAAG
* * * * * *
18847673 AGGCAGAATACGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCACA
66 AGGCAGAATACGCAAGTCAGGGATCGGCCCGATCCCCCCTACATGCTGCCGATCCAGCTGCCACA
18847738 ACCCT
131 ACCCT
18847743 CGGTCCAGTC
Statistics
Matches: 109, Mismatches: 25, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
158 26 0.24
159 82 0.75
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (158 bp):
GGAACGAACTACCTATGCATAAGCCAACCCACAAAACGAGAGTGCGGGCGCTCAGCCGACCAAAG
AGGCAGAATACGCAAGTCAGGGATCGGCCCGATCCCCCCTACATGCTGCCGATCCAGCTGCCACA
ACCCTTGATCTGACTAGGGCATAGATAT
Found at i:18848091 original size:343 final size:343
Alignment explanation
Indices: 18847440--18848250 Score: 1088
Period size: 343 Copynumber: 2.4 Consensus size: 343
18847430 CCGGTCTGAT
* * *
18847440 CTTAGACTGGGAATGAACTACGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGTTGAG-
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
* * * * *
18847504 CGGACCGAAGAGGCATAATGCGCAAGCTAGGGATCGGCTCGGTCCCCCTCTACATGCTGCCGGTC
66 CGG-TCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACATGCTACCGGAC
* * * *
18847569 CAGCTGCCACAACCCTTGATCTGACTAGGGCATAGATATGGAACGAACTCCCTATGCCTAAGCCA
130 CAGCAGCCACAACCCTCGATCCGACTAGGGCATAGACATGGAACGAACTCCCTATGCCTAAGCCA
* *
18847634 ACCCATGAAATGGGAGTGCGGGCGCTCAGCCGACCAAAGAGGCAGAATACGCAAGTCGGGGATCG
195 ACCCATGAAATGGGAGTGCGGGCGCTCAGCCGACCAAAGAGGCAGAATACGCAAGCCGGGGATCA
* * * * *
18847699 GCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCGGTCCAGTCCGATCTTAGAT
260 GCCCGATCCACCCTGCGTGATGCCGATCCTACTGTCACAACCATCGGTCCAGTCCGATCTTAGAT
*
18847764 TGGGAATGAACTCCGTATG
325 TGGGAATGAACTCCATATG
* * * *
18847783 CTTACACTGGGGATGAACTCCGTATGCATAAGTCAACCCAAAAAATGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
* * * *
18847848 CGGTCGAAGAGGCATAATGCGCAAGTC-GAGGATCGGCCCGGTCCCTCTCTGCATGCTATCGGAC
66 CGGTCGAAGAGGCATAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCCTCTACATGCTACCGGAC
* * * *
18847912 CCGCAGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CAGCAGCCACAACCCTCGATCCGACTAGGGCATAGACATGGAACGAACTCCCTATGCCTAAGCCA
* * * * ** ** *
18847977 ACCCGTGAAATGGGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCA
195 ACCCATGAAATGGGAGTGCGGGCGCTCAGCCGACCAAAGAGGCAGAATACGCAAGCCGGGGATCA
* * * * *
18848042 GCTCGGTCCACCCTGCGTGATGCCGATCCTACTGTCGCAGCCATCGGTCCAGTTCGATCTTAGAT
260 GCCCGATCCACCCTGCGTGATGCCGATCCTACTGTCACAACCATCGGTCCAGTCCGATCTTAGAT
18848107 TGGGAATGAACTCCATATG
325 TGGGAATGAACTCCATATG
* * *
18848126 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
* * * * * *
18848191 CAGTTGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCC-CTGCGTGCTACCG
66 CGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACATGCTACCG
18848251 ATCCTACTAC
Statistics
Matches: 404, Mismatches: 61, Indels: 7
0.86 0.13 0.01
Matches are distributed among these distances:
342 12 0.03
343 388 0.96
344 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
CGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACATGCTACCGGACC
AGCAGCCACAACCCTCGATCCGACTAGGGCATAGACATGGAACGAACTCCCTATGCCTAAGCCAA
CCCATGAAATGGGAGTGCGGGCGCTCAGCCGACCAAAGAGGCAGAATACGCAAGCCGGGGATCAG
CCCGATCCACCCTGCGTGATGCCGATCCTACTGTCACAACCATCGGTCCAGTCCGATCTTAGATT
GGGAATGAACTCCATATG
Found at i:18848129 original size:26 final size:26
Alignment explanation
Indices: 18848100--18848152 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18848090 CCAGTTCGAT
*
18848100 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18848126 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18848152 C
1 C
18848153 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18848254 original size:184 final size:183
Alignment explanation
Indices: 18847940--18848499 Score: 515
Period size: 184 Copynumber: 3.0 Consensus size: 183
18847930 GTCCGACTAG
* ** * * *
18847940 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGTGAAATGGGCGTGCGGGTGCTCA
1 GGCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * * * * * *
18848005 GCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCACCCTGCGTGATGCCGATC
65 GCCAGTTGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCGATC
* *
18848070 CTACTGTCGCAGCCATCGGTCCAGTTC-GATCTTAGATTGGGAATGAACTCCATA
130 CTACTGTCGCA-CCATCGGTCCAGATCTGATCTTAGACTGGGAATGAACTCCATA
* *
18848124 TGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
1 GGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTC
*
18848188 AGCCAGTTGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTACCGAT
64 AGCCAGTTGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCGAT
* *
18848253 CCTACTACTGGTCCTGCTACCGTAATCCTCGATCCA-ATCTGATCTTAGACTGGGAAAGAACT-C
129 -C--CTACT-GT-C-GC-ACC---A---TCGGTCCAGATCTGATCTTAGACTGGGAATGAACTCC
18848316 ATA
181 ATA
* * * ** *
18848319 GGCTTATACATGAAATAAACTCCGTACACCTAAGCATACCCACGAAACGAGCGTGCGGGCACTCA
1 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCA-ACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * *
18848384 GCCAG-TCAGAGAGGCAGAATGCATAAG-CAGGGGACCGG-CCAGGTCCCCCCATGTGTGCTGTC
65 GCCAGTTGA-AGAGGCAGAATGCGCAAGCCA-GGGATCGGCCCA-GTCCCCCC-TGCGTGCTGCC
* * *
18848446 GATCCTACTGTCGTAACCCTCGGTCC-GGTCTGATCTTAGACTGGGAATGAACTC
126 GATCCTACTGTCG-CACCATCGGTCCAGATCTGATCTTAGACTGGGAATGAACTC
18848500 TGTATGCCTA
Statistics
Matches: 308, Mismatches: 44, Indels: 47
0.77 0.11 0.12
Matches are distributed among these distances:
183 1 0.00
184 137 0.44
185 1 0.00
187 5 0.02
188 2 0.01
189 1 0.00
190 8 0.03
191 2 0.01
192 2 0.01
193 6 0.02
194 9 0.03
195 95 0.31
196 39 0.13
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (183 bp):
GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTTGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCGATCC
TACTGTCGCACCATCGGTCCAGATCTGATCTTAGACTGGGAATGAACTCCATA
Found at i:18849404 original size:159 final size:158
Alignment explanation
Indices: 18848958--18849427 Score: 409
Period size: 159 Copynumber: 3.0 Consensus size: 158
18848948 CTGCAGCCGG
* * * *
18848958 TCCTGCTACCACAACTCTTAGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCAATCCGAGC-GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * *
18849022 CCAACCCACGAAATGAGCTTGT-GGGCGCTCAGCCGACCGGAGAGACAGAATGCGCAAGTCGGGG
65 CCAACCCACGAAAT-AG-GTGTCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGG
* * * * ** *
18849086 ACCGACTCGATCCCCC-CTGGGTGCTGTCGA
128 ATCGGCCCGATCCCCCTCTGCGTGCTACCAA
* * * ** * ** *
18849116 TCCTGCTGCCGCAACCCTCAATCCGATCTGATCTTAGA-TTGGAAATGAACTTTGTATGCTTAAG
1 TCCTGCTGCCACAACCCTCAATCCGAGCGGGGCTTAGACATGG-AATGAACTCCGTATGCCTAAG
* * * * * * * * *
18849180 TCAACCCATGAAACAAGTGTGCGGGTGCTGAGCC-AGCCGGAAAGGCATAATGCACAAACCGGGG
65 CCAACCCACGAAATAGGTGT-CGGGTGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGG
18849244 ATCGGCCCGATCCCCCTCTGCGTGCTACCAA
128 ATCGGCCCGATCCCCCTCTGCGTGCTACCAA
** *
18849275 TCCTGCTGCCACAACCCTTGA-CCTG-GCAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 TCCTGCTGCCACAACCCTCAATCC-GAGC-GGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * *
18849338 GCCAACCCACGAAATAGGTGTACGGGTGCTCAACCGATCGGAGAGGCAGAATACGCAAGCCAGGG
64 GCCAACCCACGAAATAGGTGT-CGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGG
* *
18849403 ATTGGCCCTG-TCTCCCT-TGCGTGCT
128 ATCGGCCC-GATCCCCCTCTGCGTGCT
18849428 GCTGATTTTG
Statistics
Matches: 241, Mismatches: 60, Indels: 22
0.75 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 5 0.02
158 113 0.47
159 115 0.48
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
TCCTGCTGCCACAACCCTCAATCCGAGCGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAATAGGTGTCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC
GGCCCGATCCCCCTCTGCGTGCTACCAA
Found at i:18849463 original size:669 final size:672
Alignment explanation
Indices: 18847795--18850235 Score: 2201
Period size: 696 Copynumber: 3.6 Consensus size: 672
18847785 TACACTGGGG
** * ** * * * *
18847795 ATGAACTCCGTATGCATAAGTCAACCCAAAAAATGAGCGTGCAGGCGCTGAGCCGGTC-GAAGAG
1 ATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCAGCCGGAA-AG
* * * * * ** * * * *
18847859 GCATAATGCGCAAGTC-GAGGATCGGCCCGGTCCCTCTCTGCATGCTATCGGACCCGCAGCCACA
65 GCATAATGCACAAGCCAG-GGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACA
* * * * ** *
18847923 ACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGTGAAAT
129 ACCCT-TGACCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * ** *
18847988 GGGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCAC
193 GGGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCCCGGTCC-C
* * * * * * * * * * *
18848053 CCTGCGTGATGCCGATCCTACTGTCGCAGCCATCGGTCCAGTTCGATCTTAGATTGGGAATGAAC
257 CTTGCGTGCTG-TGATCCTGCTGCCGCAACCCTC-GTCCGGTCCGATCTTATACTGGGAATGAAC
** **
18848118 TCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
320 TCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTAG
* ** * * * * ** * *
18848183 CGCTCAGCC-AGTTGAAGAGGCAGAATGCGCAAG-CCAGGGATCGGCCCAGTCCCCCCTGCGTGC
385 CGCTCAACCGA-CCGGAGAGGTAGAATGCGCAAGTTC-GGGACCAACCCAGTCCTCCCTACGTGC
* * * * * * * * *
18848246 TACCGATCCTACTA-CTGGTCCTGCTACCGTAATCCTCGATCCAATCTGATCTTAGACTGGGAAA
448 TGCCAATCCTGC-AGCCGGTCCTGCTACCG-AAACCTCG-TCTAGTCCGATC-T----T-GG--T
* * * **
18848310 GAACTCATAGGCTTATACATGAAATAAACTCCGTACACCTAAG-CATACCCACGAAACGAGCGTG
502 G----C---GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA-ACCCACGAAACGAGCGTG
* * * * *
18848374 CGGGCACTCAGCC-AGTCAGAGAGGCAGAATGCATAAGCAGGGGACCGGCCAGGTCCCCCCATGT
559 CGGGCGCTCAGCCGA-TCGGAGAGGCAGAATGCACAAGC-GGGGACCGACC-GATCCCCCC-TGT
* * * *
18848438 GTGCTGTCGATCCTACTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
620 GTGCTGTCGATCCTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGA-TTGGA
* * ** *
18848492 ATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCGGTAGGAGAGG
1 ATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCAGCCGGAAAGG
* * * * * ** *
18848557 CATAATACGCAAGCCCGAGATCGGCCCGGTCTTCCTCTGCGTGCTGCCGGTCCTGCTGCCACAAC
66 CATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACAAC
* ** *
18848622 CCTTGGTCCGGCTGGGG-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAATGAAACGG
131 CCTT-GACCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* ** * * * * * **
18848686 GCGTGCGAGCACTTAGCCGGTCAGAGAGGCAGATTACGCAAGTCGGGGATTGCCCCGGTCCCCCC
195 GCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCCCGGTCCCCTT
* * *
18848751 GCGTGCTGTTGATCCTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTATATTGAGAATGAACTCT
260 GCGTGCTG-TGATCCTGCTGCCGCAACCCTC-GTCCGGTCCGATCTTATACTGGGAATGAACTCT
* * *
18848816 GTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-AGGT
323 GTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTA-GC
*** **
18848879 GCTCAACCG-CCGGAGAGGTAGAATGCGCAAG-TCGGGACCGGTCTGGTCCTCCTCTACGTGCTG
386 GCTCAACCGACCGGAGAGGTAGAATGCGCAAGTTCGGGACCAACCCAGTCCTCC-CTACGTGCTG
18848942 CCAATCCTGCAGCCGGTCCTGCTACC-ACAA-CTC-T-TAGTCCGA-C-T-G-G-GGCTTAGACA
450 CCAATCCTGCAGCCGGTCCTGCTACCGA-AACCTCGTCTAGTCCGATCTTGGTGCGGCTTAGACA
* * * *
18848998 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCTTGTGGGCGCTCAGCCGACCGGA
514 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGA
* * * *
18849063 GAGACAGAATGCGCAAGTCGGGGACCGACTCGATCCCCCCTGGGTGCTGTCGATCCTGCTGCCGC
579 GAGGCAGAATGCACAAG-CGGGGACCGAC-CGATCCCCCCTGTGTGCTGTCGATCCTGCTGCCGT
* *
18849128 AACCCTCAATCCGATCTGATCTTAGATTGGAA
642 AACCCTCGATCCGGTCTGATCTTAGATTGG-A
* * ** ** *
18849160 ATGAACTTTGTATGCTTAAGTCAACCCATGAAACAAGTGTGCGGGTGCTGAGCCAGCCGGAAAGG
1 ATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCAGCCGGAAAGG
* * * *
18849225 CATAATGCACAAACCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCAATCCTGCTGCCACAAC
66 CATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACAAC
* **
18849290 CCTTGACCTGGCAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAG
131 CCTTGACC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* * * * * *
18849355 GTGTACGGGTGCTCAACCGATCGGAGAGGCAGAATACGCAAGCCAGGGATTGGCCCTGTCTCCCT
195 GCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCCCGGTC-CCCT
** * * * *
18849420 TGCGTGCTGCTGATTTTGCTACCGCAACCCTCGTCCAGTCCGATCTTAGACTGGGAATGAACTCC
259 TGCGTGCTG-TGATCCTGCTGCCGCAACCCTCGTCCGGTCCGATCTTATACTGGGAATGAACTCT
*
18849485 GTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCTAGCGC
323 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTAGCGC
* * * * ** * **
18849550 TCAGCCGATCGGAGAGGTAGAATGCGCTAGTTGGGGATTAACCCAGTCCTCCCTACGTGCTTCTG
388 TCAACCGACCGGAGAGGTAGAATGCGCAAGTTCGGGACCAACCCAGTCCTCCCTACGTGCTGCCA
* * * *
18849615 ATCCTGCTGCTGGTTCTGCTGCCGTAAACCTCGGTCTAGTCCGATCTTAGATTGGATTGAACTCC
453 ATCCTGCAGCCGGTCCTGCTACCG-AAACCTC-GTCTAGTCCGATC-----TTGG--TG-----C
* *
18849680 GTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGC
504 G---GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* *
18849745 TCAGCCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGATCCCACCCTGTGTGCTGTC
566 TCAGCCGATCGGAGAGGCAGAATGCACAAG-CGGGGACCGA-CCGATCCC-CCCTGTGTGCTGTC
* * * * *
18849810 GATCCTGCTACAGTAACCCTTGATCCGGTCTGGTCTTAGACTAGGA
628 GATCCTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGA-TTGGA
* * * * * *
18849856 ATGAACTTCGTATGCCTAAGTCAACCAACAAAATGAGCATTCGGGGGCTGAGCCAACCGGAGAA-
1 ATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCAGCCGGA-AAG
* * *
18849920 GCGTAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAA
65 GCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACAA
* * * *
18849985 CCCTCGATCCGGTTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACG
130 CCCTTGA-CCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* * * * * * * *
18850050 GGCGTGCGGGTGCTCCGCCGGTCGGAGAGTCAGAGTGCGCAAGCTGGGGATCGGCTCGGTCCTCT
194 GGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCCCGGTCCCCT
** * * *
18850115 TATGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTT-TGACTGGGAATGAACT
259 TGCGTGCTGT-GATCCTGCTGCCGCAACCCTCG-TCCGGTCCGATCTTAT-ACTGGGAATGAACT
* * * * *
18850179 CTGCATACTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCAACAAAACGAGC
321 CTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
18850236 ATGTGGGTTC
Statistics
Matches: 1431, Mismatches: 258, Indels: 111
0.80 0.14 0.06
Matches are distributed among these distances:
667 6 0.00
668 164 0.11
669 268 0.19
670 85 0.06
671 15 0.01
672 4 0.00
674 1 0.00
675 8 0.01
676 1 0.00
677 1 0.00
680 1 0.00
682 2 0.00
683 1 0.00
686 1 0.00
688 1 0.00
689 5 0.00
690 1 0.00
692 5 0.00
693 16 0.01
694 49 0.03
695 242 0.17
696 426 0.30
697 125 0.09
698 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (672 bp):
ATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCAGCCGGAAAGG
CATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACAAC
CCTTGACCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
CGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCCCGGTCCCCTTG
CGTGCTGTGATCCTGCTGCCGCAACCCTCGTCCGGTCCGATCTTATACTGGGAATGAACTCTGTA
TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTAGCGCTCA
ACCGACCGGAGAGGTAGAATGCGCAAGTTCGGGACCAACCCAGTCCTCCCTACGTGCTGCCAATC
CTGCAGCCGGTCCTGCTACCGAAACCTCGTCTAGTCCGATCTTGGTGCGGCTTAGACATGGAATG
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAG
AATGCACAAGCGGGGACCGACCGATCCCCCCTGTGTGCTGTCGATCCTGCTGCCGTAACCCTCGA
TCCGGTCTGATCTTAGATTGGA
Found at i:18849493 original size:26 final size:26
Alignment explanation
Indices: 18849464--18849513 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18849454 CCAGTCCGAT
18849464 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18849490 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18849514 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18850093 original size:159 final size:159
Alignment explanation
Indices: 18849685--18850104 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 159
18849675 ACTCCGTATG
*
18849685 CTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 CTTAGACATGGAATGAACTCC-CTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
18849749 CCGATCGGAGAGGT-AGAATGCACAAGCCGGGGATCGACCCGATCCCACCCTGTGTGCTGTCGAT
65 CCGATCGGAGA-GTCAGAATGCACAAGCCGGGGATCGGCCCGATCCCACCCTGCGTGCTGCCGAT
* * *
18849813 CCTGCTACAGTAACCCTTGATCCGGTCTGGT
129 CCCGCTACAGCAACCCTCGATCCGGTCTGGT
* * * * * * * * *
18849844 CTTAGAC-TAGGAATGAACTTCGTATGCCTAAG-TCAACCAACAAAATGAGCATTCGGGGGCTGA
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCT-AACCCACGAAACGAGCGTACGGGCGCTCA
* * *
18849907 GCCAACCGGAGAAG-C-GTAATGCACAAGCCAGGGATCGGCCCGATCCC-CCTCTGCGTGCTGCC
64 GCCGATCGGAG-AGTCAG-AATGCACAAGCCGGGGATCGGCCCGATCCCACC-CTGCGTGCTGCC
18849969 -AGTCCCGCTACCA-CAACCCTCGATCCGGT-TGGGT
126 GA-TCCCGCTA-CAGCAACCCTCGATCCGGTCT-GGT
* * * *
18850003 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGTGCTCCGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
18850068 CGGTCGGAGAGTCAGAGTGCGCAAGCTGGGGATCGGC
66 CGATCGGAGAGTCAGAATGCACAAGCCGGGGATCGGC
18850105 TCGGTCCTCT
Statistics
Matches: 210, Mismatches: 37, Indels: 28
0.76 0.13 0.10
Matches are distributed among these distances:
158 8 0.04
159 196 0.93
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGATCGGAGAGTCAGAATGCACAAGCCGGGGATCGGCCCGATCCCACCCTGCGTGCTGCCGATCC
CGCTACAGCAACCCTCGATCCGGTCTGGT
Found at i:18850833 original size:158 final size:158
Alignment explanation
Indices: 18850566--18851067 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 158
18850556 ACTCTGTATG
* * * ** * * * * *
18850566 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCTAACACACAAAACAAGCATACGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * ** *
18850630 TCGACCGAAAAGGCAGAATGTGCAAGCCAGGAATTAGCCCGATCCCCCCTGCGTGCTGTCGATCT
65 CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
*
18850695 TGCTGCCGTAACCCTCGGTTCGGTCTGAT
130 TGCTGCCGCAACCCTCGGTTCGGTCTGAT
* * * *
18850724 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
18850789 CGATCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTGTGCTATC-AGTC
66 CGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGA-TC
* * * * **
18850853 CCGCTACCACAACCCTCAG-TCTGGT-TGGGG
129 CTGCTGCCGCAACCCTCGGTTC-GGTCT-GAT
*** * * *
18850883 CTTAGACACAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
18850948 CGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCACCCATACATGCTGCCGATCCT
66 CGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* * * **
18851013 GCTGTCGCAACCCTCGGTCCGATCCAAT
131 GCTGCCGCAACCCTCGGTTCGGTCTGAT
18851041 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18851068 TTAGTCTGGG
Statistics
Matches: 266, Mismatches: 70, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 1 0.00
158 138 0.52
159 127 0.48
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTTCGGTCTGAT
Found at i:18851070 original size:26 final size:26
Alignment explanation
Indices: 18851041--18851093 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18851031 CCGATCCAAT
*
18851041 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
18851067 CTTAGTCTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18851093 C
1 C
18851094 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18851801 original size:26 final size:26
Alignment explanation
Indices: 18851763--18851815 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18851753 GGCTCAAACT
18851763 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
18851789 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAGGAACTCCGTATG
18851815 C
1 C
18851816 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:18852050 original size:153 final size:154
Alignment explanation
Indices: 18851762--18852051 Score: 415
Period size: 153 Copynumber: 1.9 Consensus size: 154
18851752 TGGCTCAAAC
*
18851762 TCTTAGACTGGGAAGGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAAGGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18851827 CACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCC
66 CACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCC
*
18851892 TGATCCCTTTCTGCATGCTGTTGA
131 CGATCCCTTTCTGCATGCTGTTGA
* * * *
18851916 TCTTAGACTGGGAATGAACTCTATATGCTTAGAC-TGGGGATGAACTCCGT-TGCCTAAGTCAAC
1 TCTTAGACTGGGAAGGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
18851979 CCACGAAACGAGCGTGCGGGTGTTCAG-TCGGCCAGAGAGGCATAATGCGCAAGCTGGGGATCAG
65 CCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAG
18852043 CCCGATCCC
129 CCCGATCCC
18852052 CCTTTTTGTG
Statistics
Matches: 120, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
152 1 0.01
153 75 0.62
154 44 0.37
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Consensus pattern (154 bp):
TCTTAGACTGGGAAGGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCC
CGATCCCTTTCTGCATGCTGTTGA
Found at i:18852787 original size:159 final size:157
Alignment explanation
Indices: 18852258--18853100 Score: 633
Period size: 158 Copynumber: 5.3 Consensus size: 157
18852248 GGTCCTACAA
* * * * * * *
18852258 CCGCAACCCTCGGTTTAGTCCAATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCAAC
1 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * * * * *
18852323 GAAATGAGCGTGGGGGCACTCAGCCGACTGCAGAGGCAGAATGCACAAGCCGGGGACCGGCCTGG
66 GAAACGAGAGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGG
** ** *
18852388 TCCCTCCTGTATGCTATCGATCCTACTG
131 TCCC-CCTGCGTGCTGCCGATCCTGCTG
* *
18852416 CCGTC-ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
1 CCG-CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * * *
18852480 CGAAACGAGAGTGCAGGTGCTGAG-CTAGTCGAAGAGGCATAATGTGCAAGCCGGGGATC-GACC
65 TGAAACGAGAGTGCGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CC
* * *
18852543 CGGTCCCCTCTACTTGCTGCCGGT-CTCGCTG
128 CGGTCCCC-CTGCGTGCTGCCGATCCT-GCTG
* * * ** ** *
18852574 CCACAACCCTCGGTCCGATTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCGCAACCCTCGGTCTGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * *
18852638 TGAAACGGGCGTACGGGCGCTCAGCTGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCG
65 TGAAACGAGAGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCG
* * *
18852703 ATGCACCCCTGCGTGCTGTCGATCCTGCTA
130 GT-C-CCCCTGCGTGCTGCCGATCCTGCTG
* * * * *
18852733 TCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCAT
1 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * ** * * *
18852798 AAAATGAGAGTACGGGTGCTAAGCCGGTCGGAGAGGCACAATGCGCAAGCCGGGGATCAACCCGA
66 GAAACGAGAGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGG
* * ***
18852863 TCCCCCTCTACGAGCTGCC-AGTCCCATTG
131 T-CCCC-CTGCGTGCTGCCGA-TCCTGCTG
** * ** *
18852892 CCGCAACCCTTAGTCCGGCTGGGA-CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCC
1 CCGCAACCCTCGGTCTGG-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * ** *
18852955 ATGAAACGGGTGTGCGGGCACTCAGCCGACTGGATAGGCAGAATGCGCGAGCCGATGATCAGCTC
64 ATGAAACGAGAGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCC
*
18853020 GGTCCCCCCTGCGTGCTGCCGACCCTGCTG
129 GGT-CCCCCTGCGTGCTGCCGATCCTGCTG
* * * * * *
18853050 TCGCAACCCTCAGT-TCGATCCGATCTTAGACTGAGAGTGAACTCTGTATGC
1 CCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18853101 TTAGACTGGG
Statistics
Matches: 527, Mismatches: 137, Indels: 42
0.75 0.19 0.06
Matches are distributed among these distances:
157 11 0.02
158 267 0.51
159 241 0.46
160 8 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGAGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGG
TCCCCCTGCGTGCTGCCGATCCTGCTG
Found at i:18852835 original size:317 final size:316
Alignment explanation
Indices: 18852291--18853093 Score: 937
Period size: 317 Copynumber: 2.5 Consensus size: 316
18852281 TCTTAGATTG
* * * * * * * *
18852291 GGAATGAACTTCGTATGCCTAAGCCAACCAACGAAATGAGCGTGGGGGCACTCAGCCGACTGCAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCCGACTGGAG
* * * * ** * * *
18852356 AGGCAGAATGCACAAGCCGGGGACCGGCCTGGTCCCTCCTGTATGCTATCGATCCTACTGCCGTC
66 AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCC-CCTGCGTGCTGTCGATCCTGCTGTCG-C
** * *
18852421 -ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
129 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAA
* * * * * * *
18852485 CGAGAGTGCAGGTGCTGAGCTAGTCGAAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGT-CC
194 CGAGAGTACAGGTGCTAAGCCAGTCGAAGAGGCACAATGCGCAAGCCGGGGATCAACCCGATCCC
** * * * * * *
18852549 CCTCTACTTGCTGCCGGTCTCGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACAT
259 CCTCTACGAGCTGCCAGTCCCACTGCCACAACCCTCAGTCCGACTGGGACTTAGACAT
* * * *
18852607 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCTGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCCGACTGGAG
* * *
18852672 AGGCAGAATGCGTAAGCCGGGGATCAGCCCGATGCACCCCTGCGTGCTGTCGATCCTGCTATCGC
66 AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGT-C-CCCCTGCGTGCTGTCGATCCTGCTGTCGC
* *
18852737 AACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATAAAA
129 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAA
* * * *
18852802 TGAGAGTACGGGTGCTAAGCCGGTCGGAGAGGCACAATGCGCAAGCCGGGGATCAACCCGATCCC
194 CGAGAGTACAGGTGCTAAGCCAGTCGAAGAGGCACAATGCGCAAGCCGGGGATCAACCCGATCCC
* * * *
18852867 CCTCTACGAGCTGCCAGTCCCATTGCCGCAACCCTTAGTCCGGCTGGGACTTAGACAT
259 CCTCTACGAGCTGCCAGTCCCACTGCCACAACCCTCAGTCCGACTGGGACTTAGACAT
* *
18852925 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAGCCGACTGGAT
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCCGACTGGAG
* ** * * *
18852990 AGGCAGAATGCGCGAGCCGATGATCAGCTCGGTCCCCCCTGCGTGCTGCCGACCCTGCTGTCGCA
66 AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGT-CCCCCTGCGTGCTGTCGATCCTGCTGTCGCA
* * * * *
18853055 ACCCTCAGT-TCGATCCGATCTTAGACTGAGAGTGAACTC
130 ACCCTCGGTCT-GGTCCAATCTTAGACTGGGAATGAACTC
18853094 TGTATGCTTA
Statistics
Matches: 407, Mismatches: 75, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
316 82 0.20
317 188 0.46
318 137 0.34
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (316 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCCGACTGGAG
AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAA
CCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAACG
AGAGTACAGGTGCTAAGCCAGTCGAAGAGGCACAATGCGCAAGCCGGGGATCAACCCGATCCCCC
TCTACGAGCTGCCAGTCCCACTGCCACAACCCTCAGTCCGACTGGGACTTAGACAT
Found at i:18853116 original size:26 final size:26
Alignment explanation
Indices: 18853074--18853126 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18853064 TCGATCCGAT
*
18853074 CTTAGACTGAGAGTGAACTCTGTATG
1 CTTAGACTGAGAGTGAACTCCGTATG
*
18853100 CTTAGACTG-GGGATGAACTCCGTATG
1 CTTAGACTGAGAG-TGAACTCCGTATG
18853126 C
1 C
18853127 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAGTGAACTCCGTATG
Found at i:18853631 original size:159 final size:164
Alignment explanation
Indices: 18853442--18853894 Score: 415
Period size: 171 Copynumber: 2.7 Consensus size: 164
18853432 CCGGTCCGAT
* * * * *
18853442 CTTAGAC-TGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
18853506 CTGATCGGAGAGGCATG-ATGCGCAAGCCGGGGATTGACCCGTTCCCCCTCTGCGTGCTACCG-G
65 CTGATCGGAGAGGCA-GAATGCGCAAGCCGGGGATTGACCCG-TCCCCCTCTGCGTGCTACCGTG
* *
18853569 -T-C-G-CAT-TGCCATAACCTTCGGTCCGACT-GGG
128 CTACGGTCATCTGCCACAACCCTCGGTCCGACTAGGG
* * * * **
18853600 CCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGCGAAACGGGCCTGCGGCCGTTCAG
1 -CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * * * * *
18853665 TTGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATT-AGCTCGATCCCCCTCTGCATGCTGCCGAT
65 CTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGA-CCCG-TCCCCCTCTGCGTGCTACCG--
* *
18853729 TCTGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGG
126 --TGCTA-CGGTCAT-CTGCCACAACCCTCGGTCCGACTAGGG
* * *
18853772 CTTAGACATGGAATGAACTTCTTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG-
* * * * * *
18853837 CGGCT-GGAGAGGTAGAATGCGCAAGCCGGGCATCGACCCAGTCCCCCCCTGCGTGCTA
65 CTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCC-GTCCCCCTCTGCGTGCTA
18853895 TCCGATCCTG
Statistics
Matches: 229, Mismatches: 46, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
158 2 0.01
159 100 0.44
160 1 0.00
164 1 0.00
165 1 0.00
167 1 0.00
168 1 0.00
169 2 0.01
171 114 0.50
172 6 0.03
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.19
Consensus pattern (164 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
TGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGTCCCCCTCTGCGTGCTACCGTGCTA
CGGTCATCTGCCACAACCCTCGGTCCGACTAGGG
Found at i:18854050 original size:186 final size:184
Alignment explanation
Indices: 18853773--18854135 Score: 509
Period size: 186 Copynumber: 2.0 Consensus size: 184
18853763 CGGCTAGGGC
* * *
18853773 TTAGACATGGAATGAACTTCTTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGTC
1 TTAGACATGGAATGAACTTCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCC
* ** * * *
18853838 GGCTGGAGAGGTAGAATGCGCAAGCCGGGCATCGACCC-AGTCCCCCCCTGCGTGCTATCCGATC
66 GACCAGAGACGCAGAATGCACAAGCCGGGCATCGACCCGA-T-CCCCCCTGCGTGCTAT-CGATC
18853902 CTGCTAT-C-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGCATGG
128 CTG-T-TGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGCATGG
*
18853959 TTAGACATGGAATGAAC-TCTATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 TTAGACATGGAATGAACTTCT-TATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* *
18854023 CGACCAGAGACGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTTGCGTGCTATCGATCCT
65 CGACCAGAGACGCAGAATGCACAAGCCGGGCATCGACCCGATCCCCCCTGCGTGCTATCGATCCT
* * *
18854088 GTTGCTGCAACCCTTGGTTCGGTTCGATCTTAGACTGGGAATGAACTC
130 GTTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
18854136 TGTCTGCCTA
Statistics
Matches: 158, Mismatches: 15, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
182 1 0.01
183 2 0.01
184 47 0.30
185 18 0.11
186 89 0.56
187 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
TTAGACATGGAATGAACTTCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCC
GACCAGAGACGCAGAATGCACAAGCCGGGCATCGACCCGATCCCCCCTGCGTGCTATCGATCCTG
TTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGCATGG
Found at i:18854341 original size:159 final size:158
Alignment explanation
Indices: 18853959--18854458 Score: 431
Period size: 159 Copynumber: 3.2 Consensus size: 158
18853949 CTCCGCATGG
*
18853959 TTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
18854024 GACCAGAGACGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTTGCGTGCTATCGATCCTG
66 GACCAGAGACGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCGCGTGCTACCGATCCTA
* ** ** * * *
18854089 TTGCTGCAACCCTTGGTTCGGTTCGATC
131 CTGCCACAACCCCCGGTCCGGCTCGAGC
* * * * * * * *
18854117 TTAGAC-TGGGAATGAACTCTGTCTGCCTAAGTCAACCCACAAAACGAGCGTGAGGGTGTTGAGC
1 TTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
18854181 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCCGCGTGCTACCGATAC
65 CGACCAGAGACGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCT-CGCGTGCTACCGAT-C
18854246 C-ACTGCCACAACCCCCGGTCCGGCT-GAGGC
128 CTACTGCCACAACCCCCGGTCCGGCTCGA-GC
* * * ** * * *
18854276 TTGGACATGAAATGACCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** **
18854341 GACC-GAAAAGGTAGAATGCACAA-CCTGGGCATCGGTCCGATCCCCCT-GCGTGCTGTCGATCC
66 GACCAG-AGACGCAGAATGCACAAGCC-GGGGATCGACCCGATCCCCCTCGCGTGCTACCGATCC
* * * * * *
18854403 TGCTGCCGCAATCCTCGGTCC-GATCTGATC
129 TACTGCCACAACCCCCGGTCCGGCTC-GAGC
*
18854433 TTAGAC-TAGGAATGAACTCTGTATGC
1 TTAGACAT-GGAATGAACTCTATATGC
18854459 TTAGAGTGGG
Statistics
Matches: 268, Mismatches: 63, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
156 5 0.02
157 48 0.18
158 102 0.38
159 110 0.41
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GACCAGAGACGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCGCGTGCTACCGATCCTA
CTGCCACAACCCCCGGTCCGGCTCGAGC
Found at i:18854461 original size:26 final size:26
Alignment explanation
Indices: 18854432--18854484 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18854422 CCGATCTGAT
18854432 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* * *
18854458 CTTAGAGTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
18854484 C
1 C
18854485 CTAATTCCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:18855364 original size:26 final size:26
Alignment explanation
Indices: 18855328--18855380 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18855318 CTGGTTTGAT
*
18855328 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18855354 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18855380 C
1 C
18855381 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18855563 original size:26 final size:26
Alignment explanation
Indices: 18855525--18855577 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18855515 CCGGTCTGAT
*
18855525 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18855551 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18855577 C
1 C
18855578 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18856060 original size:26 final size:26
Alignment explanation
Indices: 18856024--18856076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18856014 TCGGTCTGAT
18856024 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
18856050 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
18856076 C
1 C
18856077 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:18856844 original size:880 final size:880
Alignment explanation
Indices: 18855352--18856982 Score: 2176
Period size: 880 Copynumber: 1.9 Consensus size: 880
18855342 GAACTCCGTA
* * *
18855352 TGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAACGAGCGTGCGGACGCTCAG
1 TGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAACGAGCGTGCGGACGATCAG
* * * * * * **
18855417 TCGGTCGGAGAGGCAGAATGCATAAGCCGAGGATCGACCCGATCCCCCCCTGTGTGCTACCGATC
66 TCGATCAGAGAGACAGAACGCACAAGCCGAGGATCGACCCAATCCCCCCCTGCATGCTACCGATC
* * * *
18855482 CTGCTACTGGTCCCTGCTACTGGAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCG
131 CTGCTACTGGTCCCTGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTTCG
* *
18855547 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTACGGGTACT
196 TATGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTACGGGTACT
* * * * * * *
18855612 CAGCCGGCCGGAGAGGTAGAATGCGTAAGTCGGGGACCGGCCCAGTCCCCCTGCGTGCTGTCGAT
261 CAGCCGACAGAAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCAGTCCCCCTGCGTGCTGTCAAT
* * * * *
18855677 CCTGCTACCACAACCCTCAGTCCTGTCCGATCTTAGACTAGGAATGAACTTCGTATGTCAAAATT
326 CCTACTACCACAACCCTCAGTCCTGTCCGATCTTAGACTAGGAATGAACTCCATATGCCAAAATC
* * *
18855742 AACCCACGAAACAAGCGTTCGGGCGCTGAGCCGGTCAAAGAGGCATAATGCGCAAGCCTGGGATC
391 AACCCACGAAACAAGCGTACGGGCGCGGAGCCGGTCAAAGAGGCATAATGCGCAAGCCTGAGATC
* * * * * ** *
18855807 GGCCCGGTCCCCCTCTGCGTGCTATCGATCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTCAG
456 AGCCCGGTACCCCTCTGCGTGCTACCGATCCCACTACCACAACCCTCGATCCAGCTAGGGCTCAG
* *
18855872 ACATGGAATGAACTCCTTATGCCCAACCCAACCCATGAAATGGGCGTACGGGCCCTCAGCCGGTC
521 ACATGGAATGAACTCCTTATGCCCAACCCAACCCATGAAACGGGCGTACGGGCACTCAGCCGGTC
* *
18855937 GAAGAGGTAGAATGCGCAAGACAGGGATC-AGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGC-G
586 GAAGAGGCAGAATGCGCAAGACAGGGATCGACCT-GGTCCCCCCTGCGTGCTGTCGATCCTGCTG
* * ** *
18856000 CCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGGATG
650 CCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGAGATG
* *
18856065 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGAGCGCCCAGCTGGCCGTAGAGGCCG
715 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCGCCCAGCTGGCCGTAGAGGCCG
18856130 ATCGGAGAGGCATAATACGTAGGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTACCAATCCGT
780 ATCGGAGAGGCATAATACGTAGGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTACCAATCCGT
18856195 TGCCGGTCTTGCTGCCATAACCCTAGGTTCGACTGG
845 TGCCGGTCTTGCTGCCATAACCCTAGGTTCGACTGG
* * *
18856231 TGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGG-CGAT
1 TGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCA-CAAACGAGCGTGC-GGACGAT
* * * **
18856294 CAGTCGATCAGAGAGACAGAACGCGCAAGCTGAGGATCGACCCAAT-CCTCCCTGCATGCTGTCG
63 CAGTCGATCAGAGAGACAGAACGCACAAGCCGAGGATCGACCCAATCCCCCCCTGCATGCTACCG
* *
18856358 ATCCTGCTACTGGT-CCTGCTATCT-CAACCCTCGGTCCAGTCTGATCTTTGGCTAGGAATGAAC
128 ATCCTGCTACTGGTCCCTGCTA-CTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAAC
* * * * **
18856421 TAT-GTATGGTTAGACTTGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGG
192 T-TCGTATGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTACGG
* * * *** *
18856485 GTGCTCAGCCGATAGAAGAGGCAGAATGTGCAAGCCGGGGTTTGGCCCGGTCCCCTCCTGCGTGC
256 GTACTCAGCCGACAGAAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCAGT-CCC-CCTGCGTGC
* * * *
18856550 TGTCAATCTTACTACCGCAACCCAT-GGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCATAT
319 TGTCAATCCTACTACCACAACCC-TCAGTCCT-GTCCGATCTTAGACTAGGAATGAACTCCATAT
* * * *
18856613 GCCTAAGTCAACCCACGAAATAAGCGTACGGGCGCGGAGCCGGT-AGGAGAGGCATAATGCGCAA
382 GCCAAAATCAACCCACGAAACAAGCGTACGGGCGCGGAGCCGGTCA-AAGAGGCATAATGCGCAA
* * *
18856677 GCC-GAAGATCAGCCCGTTACCCCTCTGCGTGCTACCCG-TCCCACTACCAGAACCCTCGGTCCA
446 GCCTG-AGATCAGCCCGGTACCCCTCTGCGTGCTA-CCGATCCCACTACCACAACCCTCGATCCA
* * * * *
18856740 GCTAGGGCTTAGACATGGAATGAACT-ATCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGG
509 GCTAGGGCTCAGACATGGAATGAACTCCT-TATGCCCAACCCAACCCATGAAACGGGCGTACGGG
* *
18856804 CACTCAGCCGGTC-AGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCTCCTGCGTGCT
573 CACTCAGCCGGTCGA-AGAGGCAGAATGCGCAAGACAGGGATCGACCTGGTCCCCCCTGCGTGCT
* *
18856868 GTCGATCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCT
637 GTCGATCCTGCTGCCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAAAGAACTCCATATGCT
18856933 TAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
702 TAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
18856983 GCGGATGCTC
Statistics
Matches: 642, Mismatches: 94, Indels: 30
0.84 0.12 0.04
Matches are distributed among these distances:
878 132 0.21
879 76 0.12
880 332 0.52
881 102 0.16
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (880 bp):
TGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAACGAGCGTGCGGACGATCAG
TCGATCAGAGAGACAGAACGCACAAGCCGAGGATCGACCCAATCCCCCCCTGCATGCTACCGATC
CTGCTACTGGTCCCTGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTTCG
TATGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTACGGGTACT
CAGCCGACAGAAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCAGTCCCCCTGCGTGCTGTCAAT
CCTACTACCACAACCCTCAGTCCTGTCCGATCTTAGACTAGGAATGAACTCCATATGCCAAAATC
AACCCACGAAACAAGCGTACGGGCGCGGAGCCGGTCAAAGAGGCATAATGCGCAAGCCTGAGATC
AGCCCGGTACCCCTCTGCGTGCTACCGATCCCACTACCACAACCCTCGATCCAGCTAGGGCTCAG
ACATGGAATGAACTCCTTATGCCCAACCCAACCCATGAAACGGGCGTACGGGCACTCAGCCGGTC
GAAGAGGCAGAATGCGCAAGACAGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
CGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGAGATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCGCCCAGCTGGCCGTAGAGGCCGA
TCGGAGAGGCATAATACGTAGGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTACCAATCCGTT
GCCGGTCTTGCTGCCATAACCCTAGGTTCGACTGG
Found at i:18856934 original size:26 final size:26
Alignment explanation
Indices: 18856905--18856957 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18856895 CCGATCCAAT
18856905 CTTAGACTGG-GAATGAACTCCATATG
1 CTTAGACTGGAG-ATGAACTCCATATG
*
18856931 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCATATG
18856957 C
1 C
18856958 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCATATG
Found at i:18857882 original size:25 final size:25
Alignment explanation
Indices: 18857810--18857887 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 25
18857800 TTGTTTTGAT
18857810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
*
18857836 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGG-GATGAACTCCGTATG
*
18857862 CTTAGACTGGGATGAATTCCGTATG
1 CTTAGACTGGGATGAACTCCGTATG
18857887 C
1 C
18857888 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
25 14 0.29
26 34 0.71
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:18859503 original size:159 final size:157
Alignment explanation
Indices: 18859206--18859525 Score: 390
Period size: 159 Copynumber: 2.0 Consensus size: 157
18859196 TATCAATCCC
* * * *
18859206 GCTGTCGGTCCTACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGACCTCCGTAT
1 GCTGTCGGTCCCACTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * *
18859271 GCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAATCGGCCGGAGAGGTAGAATGCACAAG
66 ACCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAG
* *
18859336 CCGAGGATCTGCCCGGTCCCCCTCTGCGT
131 CCGAGGATCGGCCAGGT-CCCC-CTGCGT
* * *
18859365 GCTGTCGGTCCCGCTGCCACAACCTTCGGTCCGACT-GGAGCTTAGACATGGAATGAACTCCCTA
1 GCTGTCGGTCCCACTGCCACAACCCTCAGTCCGACTAGG-GCTTAGACATGGAATGAACTCCCTA
* * * * * * *
18859429 TACCTAAGGCAACCCACAAAACGGGTGTGCGGGCGCTCAGCCGACCGGAGTGGCAAAATGCGCAA
65 TACCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGGCAAAATGCACAA
* *
18859494 GGCGGGGATCGGCCAGGTCCCCCTGCGT
130 GCCGAGGATCGGCCAGGTCCCCCTGCGT
18859522 GCTG
1 GCTG
18859526 CCGATCCTGC
Statistics
Matches: 136, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
157 10 0.07
158 6 0.04
159 120 0.88
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (157 bp):
GCTGTCGGTCCCACTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTAT
ACCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAG
CCGAGGATCGGCCAGGTCCCCCTGCGT
Found at i:18859583 original size:29 final size:25
Alignment explanation
Indices: 18859562--18859611 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
18859552 CCGGTTCGAT
18859562 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
18859588 CTTAGACTGGGATGAACT-CGTATG
1 CTTAGACTGGGATGAACTCCGTATG
18859612 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.25
25 7 0.29
26 11 0.46
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:18859983 original size:26 final size:26
Alignment explanation
Indices: 18859947--18859999 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18859937 CTGGTTCGAT
18859947 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18859973 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18859999 C
1 C
18860000 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18860170 original size:387 final size:387
Alignment explanation
Indices: 18859404--18860182 Score: 1046
Period size: 387 Copynumber: 2.0 Consensus size: 387
18859394 TCCGACTGGA
* *
18859404 GCTTAGACATGGAATGAACTCCCTATACCTAAGGCAACCCACAAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAA-CCAC--AACGGGCGTGCGGGCGCTCAG
* * * *
18859469 CCGACCGGAGTGGCAAAATGCGCAAGGCGGGGATCGGCCAGGTCCCCCTGCGTGCTGCCGATCCT
63 ACGACCGGAGAGGCAAAATGCGCAAGGCGGGGATCAGCCAGATCCCCCTGCGTGCTGCCGATCCT
* * *
18859534 GCTACCGTAACCTTCGCTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
128 ACTACCGCAACCCTCGCTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
18859599 ATGAACTCGTATGTCTAAGTCAACCCATGAAACAAGCGTACGGACGTTCAATCGATTGGAGAGGC
193 ATGAACTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGACGCTCAATCGATCGGAGAGGC
* * * *
18859664 CGGCCAGAGAGGTAGAATGCGTAAGCCAGAGATCGGCCCGATCCCCCCTACATGCTACCGATCCT
258 CGGCCAGAGAGGCAGAATGCGGAAGCCAGAGATCAGCCCGATCCCCCCTACATGCTACCGATACT
* * * * *
18859729 GCTACTGGTCTTACTATCGTAACCCTTGGTCCAGTCTGATCTTAGATTGGGAATGGACTCCATAT
323 GCTACTGGTCCTACTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATAT
*
18859794 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CAC-ACGGGCGTGCGGGCGCTCAGACG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCACAACGGGCGTGCGGGCGCTCAGACG
** * *
18859857 GTCGGAGAGGCAGAAT-CGCAAGGCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCCTAC
66 ACCGGAGAGGCAAAATGCGCAAGGCGGGGATCAGCCAGAT-CCCCCTGCGTGCTGCCGATCCTAC
* * *
18859921 TGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
130 TACCGCAACCCTCGCTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGA
* * *
18859986 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAATCGGTCGGAGA-GC
194 TGAACT-CGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGACGCTCAATCGATCGGAGAGGC
* * * * * ** * *
18860050 CTGGGC-GAAGAGGCAGAATGTGGAAGCCAGGGATCAGCTCGGTCCCCCCTATGTGCTGCTGATA
258 C-GGCCAG-AGAGGCAGAATGCGGAAGCCAGAGATCAGCCCGATCCCCCCTACATGCTACCGATA
* * * *
18860114 CTGCTGCTGGTCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
321 CTGCTACTGGTCCTACTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCAT
18860179 AT
386 AT
18860181 GC
1 GC
18860183 CTAAGCCAAC
Statistics
Matches: 339, Mismatches: 45, Indels: 13
0.85 0.11 0.03
Matches are distributed among these distances:
384 20 0.06
385 111 0.33
386 14 0.04
387 156 0.46
388 3 0.01
390 35 0.10
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (387 bp):
GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCACAACGGGCGTGCGGGCGCTCAGACG
ACCGGAGAGGCAAAATGCGCAAGGCGGGGATCAGCCAGATCCCCCTGCGTGCTGCCGATCCTACT
ACCGCAACCCTCGCTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATG
AACTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGACGCTCAATCGATCGGAGAGGCCGG
CCAGAGAGGCAGAATGCGGAAGCCAGAGATCAGCCCGATCCCCCCTACATGCTACCGATACTGCT
ACTGGTCCTACTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:18860401 original size:157 final size:156
Alignment explanation
Indices: 18860115--18860656 Score: 577
Period size: 157 Copynumber: 3.4 Consensus size: 156
18860105 CTGCTGATAC
* * * * * *
18860115 TGCTGCTGGTCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGTTGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
18860180 TGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATGCGCAA
66 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAA
*
18860245 GCTGGGGATTGATCGGTCCACCTTGCG
131 GCTGGGGATCGATCGGTCC-CCTTGCG
* * *
18860272 TGCTGTTGATCCTACTGTCGCAACCCTCAGTCTGATCCGATCCTAGACTGGGAATGAACTCCGTA
1 TGCTGTTGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
18860337 TGCCTAA-CTCAACCCACGAAACGAGCGTACGGCCGCTGAGCTGGCCGGAGAGGCATAATGCGCA
66 TGCCTAAGC-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCA
* * * *
18860401 AGCCGAGGATCGACTCGATCCCTCTCTGCA
130 AGCTGGGGATCGA-TCGGTCCC-CT-TGCG
* * ** * * * * *
18860431 TACTGTTGGTCCCGCTGCCACAACCCTCGGTCT-AGCTGGAGCTTAGACAT-GGAATGAACTCCC
1 TGCTGTTGATCCTACTGCCGCAACCCTCGGTCTGATC-CGATCTTAGAC-TGGGAATGAACTCCG
* * * * *
18860494 TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGTCGGAAAGGTAGAATGCGC
64 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGC
* * *
18860559 AAGATGGGGATCGACCTGGTCCCCCCTGCG
129 AAGCTGGGGATCGATC-GGT-CCCCTTGCG
* * * * * *
18860589 TGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCTGTA
1 TGCTGTTGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
18860654 TGC
66 TGC
18860657 TTAGACTGGG
Statistics
Matches: 308, Mismatches: 66, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 122 0.40
158 64 0.21
159 116 0.38
160 5 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
TGCTGTTGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAA
GCTGGGGATCGATCGGTCCCCTTGCG
Found at i:18860502 original size:159 final size:157
Alignment explanation
Indices: 18860156--18860656 Score: 443
Period size: 159 Copynumber: 3.2 Consensus size: 157
18860146 CCGGTCTGAT
* * * **
18860156 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAGC
* * * * * * * *
18860221 TGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATTGATCGGTCCACCTTGCGTGCTGTTGATCCTA
66 TGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGATCGATCCACCTTGCATACTGTTGATCCCA
* * *
18860286 CTGTCGCAACCCTCAGTCTGATCCGAT
131 CTGCCACAACCCTCAGTCTGATCCGAG
* *
18860313 CCTAGACTGGGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAACGAGCGTACGGCCGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTACGGCCGCTCAG
* *
18860377 CTGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGACTCGATCC-CTCTCTGCATACTGTTGGT
65 CTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-TCGATCCAC-CT-TGCATACTGTTGAT
* * * *
18860441 CCCGCTGCCACAACCCTCGGTCT-AGCTGGAG
127 CCCACTGCCACAACCCTCAGTCTGATC-CGAG
* * * * *
18860472 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAG
* * * * ** * * * * * * * *
18860536 CCGGTCGGAAAGGTAGAATGCGCAAGATGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCC
65 CTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGATC-GATCCACCTTGCATACTGTTGATCC
* * * * * * * *
18860601 TACTGTCGCAACCCTCGGTCTGGTTCAAT
129 CACTGCCACAACCCTCAGTCTGATCCGAG
*
18860630 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18860657 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 58, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 89 0.32
158 64 0.23
159 118 0.43
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAGC
TGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGATCGATCCACCTTGCATACTGTTGATCCCA
CTGCCACAACCCTCAGTCTGATCCGAG
Found at i:18860742 original size:13 final size:13
Alignment explanation
Indices: 18860721--18860768 Score: 87
Period size: 13 Copynumber: 3.7 Consensus size: 13
18860711 CTCAACCGGT
18860721 CGGAGAGGCTGGC
1 CGGAGAGGCTGGC
*
18860734 CGGAAAGGCTGGC
1 CGGAGAGGCTGGC
18860747 CGGAGAGGCTGGC
1 CGGAGAGGCTGGC
18860760 CGGAGAGGC
1 CGGAGAGGC
18860769 AGAATGTGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.19, C:0.23, G:0.52, T:0.06
Consensus pattern (13 bp):
CGGAGAGGCTGGC
Found at i:18860890 original size:26 final size:26
Alignment explanation
Indices: 18860861--18860913 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18860851 CCAGTCTGAT
* *
18860861 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
*
18860887 CTTAGACATGAAATGAACTCCGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
18860913 C
1 C
18860914 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTCCGTATG
Found at i:18861884 original size:26 final size:26
Alignment explanation
Indices: 18861843--18861895 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18861833 TTGGTCTGAT
18861843 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18861869 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
18861895 C
1 C
18861896 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18862396 original size:197 final size:196
Alignment explanation
Indices: 18861755--18862538 Score: 785
Period size: 197 Copynumber: 4.0 Consensus size: 196
18861745 CCAACCGGTA
* * * * * *
18861755 GGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCCTGCTAC
1 GGAGAGACAGAATGCGTAAGTCGGGGATCA-CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTAC
* * * * * *** *
18861820 CGTAATCTTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGA
65 TGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGA
* * * *
18861885 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAGCCAGTCGA-AAAGGCCG
130 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCC-GACCAGAGAGGCCG
18861949 ATC
194 ATC
* * * * * * *
18861952 AGAGAGACATAATGCGTAAGCCGAGGATCAACTCGGTCCCCCCT-CTGTGTTGTCAATCCTGCTA
1 GGAGAGACAGAATGCGTAAGTCGGGGATC-ACCCGGTCCCCCCTAC-GTGCTGTCGATCCTGCTA
*
18862016 CT-CAACCCTCCGTCCAGTCTAC-AT-TTAGACTGGGGAATGAAACTTCCGTATGCTTAGA-TCA
64 CTGCAACCCTCAGTCCAGTC--CGATCTTAGACT-GGGAATG-AAC-TCCGTATGCTTAGACT-A
* ** * * **
18862077 GGGATGAACTCCGTATACCTAAGTCAACCCATTAAACGA-CGTGCGGGCGCTCAGCCGGTC-GAA
123 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGACCAG-A
18862140 GAGGCCGATC
187 GAGGCCGATC
* * * *
18862150 GGAGAGACAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTACGTGCTGCCGATCCTACTGC
1 GGAGAGACAGAATGCGTAAGTCGGGGATCA-CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTAC
* * ** *
18862215 TGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGGATGA
65 TGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGA
* * * *
18862280 ACTCCGTATGCCTAAGTGAACCCATGAAACAAGCATGCGGGCACTTAGCCGACCAGAGAGGCC-A
130 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGACCAGAGAGGCCGA
18862344 GTC
195 -TC
* * * * * *
18862347 GGAGAGGCAGAATACGTAAGTCGGGGATCGACCCGATCCCCCTTACGTGCTGTCGATCTTGTTAC
1 GGAGAGACAGAATGCGTAAGTCGGGGATC-ACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTAC
* * * * *
18862412 CGCAACCCTCAATTCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGA
65 TGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGA
* * * * * ** *
18862477 ACTTCATATGCCTACGTCAACCCACGAAACGACCGTGCGGGTGCTCAGCCGACTAGAGAGGC
130 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGACCAGAGAGGC
18862539 AGGATGCGTA
Statistics
Matches: 479, Mismatches: 88, Indels: 40
0.79 0.14 0.07
Matches are distributed among these distances:
196 66 0.14
197 248 0.52
198 92 0.19
199 73 0.15
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (196 bp):
GGAGAGACAGAATGCGTAAGTCGGGGATCACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACT
GCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGACCAGAGAGGCCGAT
C
Found at i:18862486 original size:26 final size:26
Alignment explanation
Indices: 18862435--18862487 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
18862425 TCAGTCTGAT
*
18862435 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
18862461 CTTAGACTAGGG-ATGAACT-TCATATG
1 CTTAGACT-GGGAATGAACTCT-ATATG
18862487 C
1 C
18862488 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:18863713 original size:26 final size:26
Alignment explanation
Indices: 18863683--18863733 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18863673 CGGTCTGATA
18863683 TTAGAC-TCGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
18863709 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCATATG
18863734 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:18866587 original size:26 final size:26
Alignment explanation
Indices: 18866558--18866608 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18866548 GGTCTGATCC
18866558 TAGACT-GAGAATGAAC-TCTGTATGCG
1 TAGACTAGAG-ATGAACTTC-GTATGCG
18866584 TAGACTAGAGATGAACTTCGTATGC
1 TAGACTAGAGATGAACTTCGTATGC
18866609 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGAGATGAACTTCGTATGCG
Found at i:18867272 original size:26 final size:26
Alignment explanation
Indices: 18867225--18867274 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
18867215 GTCTGATGTG
*
18867225 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAAATTCGTATGCTT
*
18867251 AGACTGGGGATGAAA-TCTGTATGC
1 AGACTGGGAATGAAATTC-GTATGC
18867275 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.10
26 19 0.90
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAAATTCGTATGCTT
Found at i:18867985 original size:26 final size:26
Alignment explanation
Indices: 18867956--18868032 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
18867946 GCTCAAACTT
18867956 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
*
18867982 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
18868008 TTAGACATGGAATGAACTCC-TATGC
1 TTAGACATGGAATGAACTCCGTATGC
18868033 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 5 0.10
26 44 0.90
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:18869173 original size:26 final size:26
Alignment explanation
Indices: 18869144--18869195 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18869134 CGATCTGATG
*
18869144 TTAGACTGGGAATGAATTCCGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
* *
18869170 TTAGACTGGGGATGAAATCTGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
18869196 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCGTATGC
Found at i:18869908 original size:26 final size:26
Alignment explanation
Indices: 18869870--18869919 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18869860 GGCTCAAACT
18869870 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18869896 CTTAGAC-ATGGAATGAACTCCGTA
1 CTTAGACTA-GGAATGAACTCCGTA
18869920 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18870255 original size:26 final size:26
Alignment explanation
Indices: 18870211--18870260 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18870201 CCAATTAGAT
*
18870211 CTTAGACTGGGGATGAACTCCGTAAG
1 CTTAGACTGGGGATAAACTCCGTAAG
*
18870237 CTTAGACTGGTGATAAACTCCGTA
1 CTTAGACTGGGGATAAACTCCGTA
18870261 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTCCGTAAG
Found at i:18870457 original size:26 final size:26
Alignment explanation
Indices: 18870421--18870473 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18870411 CTGGTCCAAT
18870421 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
18870447 CTTAGACATGGAATGAACTCCTTATG
1 CTTAGACATGGAATGAACTCCGTATG
18870473 C
1 C
18870474 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18870807 original size:159 final size:155
Alignment explanation
Indices: 18870446--18870877 Score: 395
Period size: 159 Copynumber: 2.7 Consensus size: 155
18870436 AACTCCGTAT
*
18870446 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGC-TTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCACGAAATGAGCGTT-CGGGCGCTCA
* * * * *
18870510 ACCGG-CTTGAGAGGC-TAAATGCGCAAGCCGAGGACCAGCCCGGTCCCCCCTGTATGCTATCGA
64 GCCGGTC-GGAGAGGCAT-AATGCACAAGCAG-GGATCAGCCCGGT-CCCCCTGTATGCTATCGA
** **
18870573 TCCTACTGCTGCAACCCTCAGTTTGATCCGA
125 TCCTACTGCCACAACCCTCAGTCCGATCCGA
* * *** * * * *
18870604 TCTTAGAC-TGGGAATGAATTATGTATGCCTAAGTCAACCTACGAAACGAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACC-ACGAAATGAGCGTTCGGGCGCTCA
* *
18870668 GCCGGTCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCGGTCCCCCTTTCAGTGCTATCGGT
64 GCCGGTCGGAGAGGCATAATGCACAAG-CAGGGATCAGCCCGGTCCCCCTGT-A-TGCTATCGAT
* * ** *
18870733 CCTGCTGCCACAACCCTCGGTCCGATTGGG
126 CCTACTGCCACAACCCTCAGTCCGATCCGA
* * *
18870763 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC-CACGAAATGAGCGTTCGGGCGCTCAG
** * * * *
18870828 TGGGTCGGAGAGGCAGAATGCACAAGACGGGGATCGGCTCGGTCCTCCCT
65 CCGGTCGGAGAGGCATAATGCACAAG-CAGGGATCAGCCCGGTCC-CCCT
18870878 ACGTGTGTCG
Statistics
Matches: 219, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 10 0.05
158 80 0.37
159 123 0.56
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCACGAAATGAGCGTTCGGGCGCTCAGC
CGGTCGGAGAGGCATAATGCACAAGCAGGGATCAGCCCGGTCCCCCTGTATGCTATCGATCCTAC
TGCCACAACCCTCAGTCCGATCCGA
Found at i:18870950 original size:26 final size:26
Alignment explanation
Indices: 18870921--18870973 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18870911 CCAGTTTGAT
18870921 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18870947 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18870973 C
1 C
18870974 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18871535 original size:26 final size:26
Alignment explanation
Indices: 18871484--18871536 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18871474 CTAGTCTGAT
*
18871484 CTTAGACTGGGAATAAAGTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
18871510 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
18871536 C
1 C
18871537 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18872123 original size:11 final size:11
Alignment explanation
Indices: 18872107--18872150 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
18872097 CGGTTAGGCT
18872107 CTCCGACGATG
1 CTCCGACGATG
18872118 CTCCGACGATG
1 CTCCGACGATG
* *
18872129 CTCTGGCGATG
1 CTCCGACGATG
18872140 CTCCGACGATG
1 CTCCGACGATG
18872151 GTTCCCTAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.16, C:0.34, G:0.30, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:18872258 original size:26 final size:26
Alignment explanation
Indices: 18872220--18872272 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18872210 GGCTCAAACT
18872220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18872246 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18872272 C
1 C
18872273 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18872590 original size:26 final size:26
Alignment explanation
Indices: 18872561--18872613 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18872551 CCGATCTGAT
18872561 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18872587 CTTAGACTAGGGATGCACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18872613 C
1 C
18872614 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18873333 original size:26 final size:26
Alignment explanation
Indices: 18873295--18873347 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18873285 GGCTCAAACT
18873295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18873321 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18873347 C
1 C
18873348 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18874395 original size:27 final size:27
Alignment explanation
Indices: 18874365--18874419 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
18874355 GGCTCAAACT
18874365 CTTAGTAC-TGGGAATGAACTCCGTATG
1 CTTAG-ACATGGGAATGAACTCCGTATG
*
18874392 CTTAGACATGGGAATGAACTCTGTATG
1 CTTAGACATGGGAATGAACTCCGTATG
18874419 C
1 C
18874420 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (27 bp):
CTTAGACATGGGAATGAACTCCGTATG
Found at i:18874740 original size:26 final size:26
Alignment explanation
Indices: 18874711--18874762 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18874701 CCGATCTGAT
*
18874711 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
18874737 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
18874763 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:18875484 original size:26 final size:26
Alignment explanation
Indices: 18875442--18875494 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18875432 CTGGTCTGAT
*
18875442 CTTAGACTAGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18875468 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
18875494 C
1 C
18875495 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.