Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 171 of 402
Found at i:18875655 original size:26 final size:26
Alignment explanation
Indices: 18875618--18875668 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18875608 GCTCAAACTC
*
18875618 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCATATGA
18875644 TTAGACAT-GGAATGAACTCCATATG
1 TTAGAC-TGGGAATGAACTCCATATG
18875669 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:18875658 original size:175 final size:170
Alignment explanation
Indices: 18875299--18875683 Score: 468
Period size: 170 Copynumber: 2.2 Consensus size: 170
18875289 CAGCTGGGGC
*
18875299 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCC
** * * * * * *
18875364 AGCTGGAGAGGCAGATGCATAAGCTGGGGATCAGCTCAGTCCCCCCCTGCATGCTACCGATCTTA
66 AGCCAGAGAGGCAGATGCACAAGCCGGGGACCAGCTCAGTCCCACCCTGCATACTACCGATCCTA
** * *
18875429 CTGCTGGTCTGATCTTAGACTAGGAGTGAACTCCGTATGC
131 CTGCTGGTCAAATCTTAGACTAGGAATGAACTCCGTATGA
* * * * *
18875469 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCATGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCC
* * * **
18875534 -GACCAGAGAGGTAGAATGCGCAAGCCGGGGACCGGC-CTAGTCCCACCCTGCATACTGTCGATC
66 AG-CCAGAGAGGCAG-ATGCACAAGCCGGGGACCAGCTC-AGTCCCACCCTGCATACTACCGATC
* *
18875597 CTACTATCGTGGCTCAAACTCTTAGACTGGGAATGAACTCCGTATGA
128 CTACT-GC-TGG-TCAAA-TCTTAGACTAGGAATGAACTCCGTATGA
18875644 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
18875684 AAAATGAACG
Statistics
Matches: 181, Mismatches: 27, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
169 1 0.01
170 69 0.38
171 41 0.23
172 1 0.01
173 3 0.02
174 3 0.02
175 63 0.35
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.20
Consensus pattern (170 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCC
AGCCAGAGAGGCAGATGCACAAGCCGGGGACCAGCTCAGTCCCACCCTGCATACTACCGATCCTA
CTGCTGGTCAAATCTTAGACTAGGAATGAACTCCGTATGA
Found at i:18875732 original size:175 final size:169
Alignment explanation
Indices: 18875299--18875739 Score: 467
Period size: 175 Copynumber: 2.6 Consensus size: 169
18875289 CAGCTGGGGC
* *
18875299 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGC-AGGCGCTCAGC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGA-GCGCTCAGC
* * ** * * * * *
18875363 CAGCTGGAGAGGCAG-ATGCATAAGCTGGGGATCAGCTCAGTCCCCCCCTGCATGCTACCGATCT
65 C-GC-GAAGAGGTAGAATGCGCAAGCCGGGGACCAGCTCAGTCCCACCCTGCATACTACCGATCC
** * *
18875427 TACTGCTGGTCTGATCTTAGACTAGGAGTGAACTCCGTATGC
128 TACTGCTGGTCAAATCTTAGACTAGGAATGAACTCCGTATGA
* * * * * *
18875469 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACT-AGCATGCGGGCGCTCAGT
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA-CAAAATGAGCGTGCGAGCGCTCAGC
* * **
18875533 CGACCAGAGAGGTAGAATGCGCAAGCCGGGGACCGGC-CTAGTCCCACCCTGCATACTGTCGATC
65 CG-CGA-AGAGGTAGAATGCGCAAGCCGGGGACCAGCTC-AGTCCCACCCTGCATACTACCGATC
* *
18875597 CTACTATCGTGGCTCAAACTCTTAGACTGGGAATGAACTCCGTATGA
127 CTACT-GC-TGG-TCAAA-TCTTAGACTAGGAATGAACTCCGTATGA
* *
18875644 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAACGTGCGAGCACTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAGCC
*
18875709 GGTCGAAGAGGTAGAATGCGCAAGTCGGGGA
66 -G-CGAAGAGGTAGAATGCGCAAGCCGGGGA
18875740 TTGGCCTGAT
Statistics
Matches: 221, Mismatches: 38, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
169 1 0.00
170 62 0.28
171 43 0.19
172 1 0.00
173 3 0.01
174 7 0.03
175 101 0.46
176 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.19
Consensus pattern (169 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAGCC
GCGAAGAGGTAGAATGCGCAAGCCGGGGACCAGCTCAGTCCCACCCTGCATACTACCGATCCTAC
TGCTGGTCAAATCTTAGACTAGGAATGAACTCCGTATGA
Found at i:18875950 original size:26 final size:26
Alignment explanation
Indices: 18875909--18875961 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18875899 CCAGTTCAAT
* *
18875909 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18875935 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18875961 C
1 C
18875962 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18876372 original size:158 final size:159
Alignment explanation
Indices: 18876084--18876392 Score: 374
Period size: 158 Copynumber: 1.9 Consensus size: 159
18876074 TCCTACTACG
* *
18876084 GCAACCCTCAGTCCGGTCTGATCATAGATTGGGAATGAACTTCGTATGCCCAAGCCAACACATGA
1 GCAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTTCGTATGCCCAAGCCAACACATGA
* *
18876149 AACGAGCGTGTGGGTCCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATC
66 AACGAGCGTGTGGGTCCTCAACCGATCGGAGAGGCAGAATACACAAGCCGGGGACCGACCCGATC
* *
18876214 CCCC-TTGCGTGCTGTTGATCTTGCTATC
131 CCCCTTTGAGTGCTGTCGATCTTGCTATC
* ** * * * *
18876242 GCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCATG
1 GCAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTTC-GTATGCCCAAGCCAACACATG
* * * * * * * *
18876306 AAATGAGCGT-TCTGGTGCTGAGCCG-GCTGGAGAGGCATAATACACAAGCCGGGGATCGACCCG
65 AAACGAGCGTGT-GGGTCCTCAACCGATC-GGAGAGGCAGAATACACAAGCCGGGGACCGACCCG
18876369 ATCCCCCTTTGAGTGCTGTCGATC
128 ATCCCCCTTTGAGTGCTGTCGATC
18876393 CCGCTGCGAC
Statistics
Matches: 126, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
157 4 0.03
158 108 0.86
159 14 0.11
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (159 bp):
GCAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTTCGTATGCCCAAGCCAACACATGA
AACGAGCGTGTGGGTCCTCAACCGATCGGAGAGGCAGAATACACAAGCCGGGGACCGACCCGATC
CCCCTTTGAGTGCTGTCGATCTTGCTATC
Found at i:18877707 original size:26 final size:26
Alignment explanation
Indices: 18877669--18877721 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18877659 TCGATCCAAT
* *
18877669 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCGGTATG
18877695 CTTAGACAT-GGAAGGAACTCGGTATG
1 CTTAGAC-TGGGAAGGAACTCGGTATG
18877721 C
1 C
18877722 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCGGTATG
Found at i:18878206 original size:26 final size:26
Alignment explanation
Indices: 18878170--18878222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18878160 CCGGTTCGAT
18878170 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18878196 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18878222 C
1 C
18878223 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18878409 original size:26 final size:26
Alignment explanation
Indices: 18878367--18878419 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18878357 TCGATCTGAT
* *
18878367 CTTAGACTAGGAGTGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
18878393 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
18878419 C
1 C
18878420 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18878663 original size:698 final size:696
Alignment explanation
Indices: 18877658--18878933 Score: 1512
Period size: 698 Copynumber: 1.8 Consensus size: 696
18877648 CAACCCTCGA
* * **
18877658 TTCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAAGGAACTCGGTATGCC
1 TTCGATCCAATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAAGGAACTCCATATGCC
* * *** * **
18877723 TAAGCCAACCCATGAAACGAGCGTACGGGCACTCAACCACTTGGAGAGGTAGAATGCGTAAGTTG
66 TAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCACTCCAAGAGGTAAAATGCGTAAGCCG
* * * * * *
18877788 GGGACCGACTCGATCCCCCCTGCGTCTTGTCGATCCTTCTGCCGCAACCCTCGATCTGATCCGAT
131 GGGACCGACCCGATCCCCCCTCCGTCTTGTCGATCCTGCTACCACAACCCTCGATCTGATCCAAT
* * * *
18877853 CTTAGACTGGGACTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGAAGTTTAGC
196 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACAAAATGAGCGTGTGGAAGTTGAGC
** * * * * * * * *
18877918 AGGCCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCTGATCCCCCTCTGCGTACTGCAGGA-C
261 AGGCCACAGAGGCAAAATGCGCAAACCGAGGATCGACCCGATCCCCCTCTGCATACTAC-CGATC
* * * * *
18877982 CCGCTAG-CAGAACTC-TCT-GTCTGACTGGGGTTTAGACATGGAATGAACTCGCTATGCCTTAG
325 CCGCT-GCCACAA-TCGT-TGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * *
18878044 CTAACCCATGAAATGGGCATGCGGGCGCTCAGCT-AACCGGGGAGGTAGAATGCGCAAGTCAGGG
387 CCAACCCATGAAATGGGCATACGGGCGCTCAGCTGAA--GGAGAGGTAGAATGCACAAGCCAGGG
* * * * *
18878108 ATCAACTCAATCCCTCCTGTG-TGCTGCCGATCCTG-TGGCCGCAACCCTCGGTCCGGTTCGATC
450 ATCAACTCAATCCC-CCT-TGATGCTACCGATCCTGCT-GCCACAACCCTCAGTCCGATCCGATC
*
18878171 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
512 TTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
18878236 CAAAATGAGCATGCGGGCTGAAGAAGCCGACCGAAGAGCCAGAAAGCACAAGCCGGGGATCAGCC
577 CAAAATGAGCATGCGGGCTGAAGAAGCCGACCGAAGAGCCAGAAAGCACAAGCCGGGGATCAGCC
18878301 CAGACCCGCTGCGTGCTACCGATCCTGCTGTCGGTCCTGCTGCAGCAACCCTTAC
642 CAGACCCGCTGCGTGCTACCGATCCTGCTGTCGGTCCTGCTGCAGCAACCCTTAC
** * *
18878356 TTCGATCTGATCTTAGACTAGGAGTGAACTCTATATGCTTAGACATGGAATGAACTCCATATGCC
1 TTCGATCCAATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAAGGAACTCCATATGCC
* * * ** **
18878421 TAAGCCAACCCACGAAACGGGCGTGCAGTCACTCAGTCGGTCCAAGAGGTAAAATGCGTAAGCCG
66 TAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCACTCCAAGAGGTAAAATGCGTAAGCCG
* * * * *
18878486 GGGACC-AGCCCGATCCTCCCTCCGTGC-TGTCTATCCTGCTACCACAACCCTTGTTCTGGTCCA
131 GGGACCGA-CCCGATCCCCCCTCCGT-CTTGTCGATCCTGCTACCACAACCCTCGATCTGATCCA
* * *
18878549 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACACACAAAATGAGCGT-TCGGGAGTTG
194 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACAAAATGAGCGTGT-GGAAGTTG
* * * * * *
18878613 AGTAGGTCACCGAGGCATAAT-CAGTAAACCGAGGATCGACCCGATCCCCCTCTGCATGCTACCG
258 AGCAGGCCACAGAGGCAAAATGC-GCAAACCGAGGATCGACCCGATCCCCCTCTGCATACTACCG
* ** *
18878677 ATCTCGCTGCCACAATCGTTGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTGTGCCTAAG
322 ATCCCGCTGCCACAATCGTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * *
18878742 CCAACCCATGAAATGGGCTTACGGGCGCTCAGCTGGAAGGAGAGGTAGAATGCATAAGCCGGGGA
387 CCAACCCATGAAATGGGCATACGGGCGCTCAGCT-GAAGGAGAGGTAGAATGCACAAGCCAGGGA
** ** * * *
18878807 TCAGTTCGGTCCCCCTTGCATGCTATCGATCCTGCTGCCATAACCTTCAGTCCGATCCGATCTTA
451 TCAACTCAATCCCCCTTG-ATGCTACCGATCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTA
** * **
18878872 GACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGGACTTTGTATGCCTAAGTCAACCCA
515 GACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
18878934 TGAAACGAAC
Statistics
Matches: 473, Mismatches: 92, Indels: 26
0.80 0.16 0.04
Matches are distributed among these distances:
696 2 0.00
697 12 0.03
698 455 0.96
699 2 0.00
700 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (696 bp):
TTCGATCCAATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAAGGAACTCCATATGCC
TAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCACTCCAAGAGGTAAAATGCGTAAGCCG
GGGACCGACCCGATCCCCCCTCCGTCTTGTCGATCCTGCTACCACAACCCTCGATCTGATCCAAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACAAAATGAGCGTGTGGAAGTTGAGC
AGGCCACAGAGGCAAAATGCGCAAACCGAGGATCGACCCGATCCCCCTCTGCATACTACCGATCC
CGCTGCCACAATCGTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAATGGGCATACGGGCGCTCAGCTGAAGGAGAGGTAGAATGCACAAGCCAGGGATCAAC
TCAATCCCCCTTGATGCTACCGATCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTAG
GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAG
CATGCGGGCTGAAGAAGCCGACCGAAGAGCCAGAAAGCACAAGCCGGGGATCAGCCCAGACCCGC
TGCGTGCTACCGATCCTGCTGTCGGTCCTGCTGCAGCAACCCTTAC
Found at i:18878917 original size:26 final size:26
Alignment explanation
Indices: 18878868--18878920 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18878858 CCGATCCGAT
18878868 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* * * *
18878894 CTTAGACTGGGGATGGACTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
18878920 C
1 C
18878921 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:18879616 original size:26 final size:26
Alignment explanation
Indices: 18879578--18879630 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18879568 GGCTCAAACT
*
18879578 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18879604 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18879630 C
1 C
18879631 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18879922 original size:26 final size:26
Alignment explanation
Indices: 18879886--18879938 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18879876 TTGGTTAGAT
*
18879886 CTTAAATTGGGAATGAACTCTGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
* * *
18879912 CTTAGATTGGGGATGGACTCCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
18879938 C
1 C
18879939 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAAATTGGGAATGAACTCCGTATG
Found at i:18880572 original size:26 final size:26
Alignment explanation
Indices: 18880530--18880582 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
18880520 CCGGTCTGAT
*
18880530 CTTAGACTGGGACTGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
18880556 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
18880582 C
1 C
18880583 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18881055 original size:26 final size:26
Alignment explanation
Indices: 18881026--18881078 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18881016 CCGATTCGAT
18881026 CTTAGACTAAGGATGAACTCCGTATG
1 CTTAGACTAAGGATGAACTCCGTATG
**
18881052 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAAGGATGAACTCCGTATG
18881078 C
1 C
18881079 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGGATGAACTCCGTATG
Found at i:18881678 original size:159 final size:159
Alignment explanation
Indices: 18881260--18881780 Score: 438
Period size: 159 Copynumber: 3.3 Consensus size: 159
18881250 AACTCCATAT
*** * * * * * * **
18881260 GCTTAGACATGGAATGAACTTTGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTTG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGGGGGCGCTAAG
* * * **** * * * * *
18881325 CCAGCCGGAGAGGCAGAAAGTGCAAGCCGAGGATC-ATCCTGGTCCCTCCTCTACGTGTTG-CTA
66 CCGGCCGAAGAGGCATAATCCACAAGCCGAGGATCGA-CCCGATCCC-CCTCTAAGTGCTGTC-G
* * ** * * *
18881388 GTCCCGCTGCCATAACCCTAAGTCCGGCTGGG
128 GTCCCACTGCCACAACCCTCGGTCCGACTCGA
* * * *
18881420 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACTAAATGGGCATGGGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGGGGGCGCTAAG
* * * * * * * * **
18881485 TCGGCCGAAGAGGCGTAATGCACAAGTCGGGGATCGGCTCGATCCCCCTTTGCGTGCTGTCGGTC
66 CCGGCCGAAGAGGCATAATCCACAAGCCGAGGATCGACCCGATCCCCCTCTAAGTGCTGTCGGTC
* *
18881550 CCACTGCCACAACCCTCGGTTCG-GTCCGA
131 CCACTGCCACAACCCTCGGTCCGACT-CGA
* ** * * ** *
18881579 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTTGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGGGGGCGCTAA
*
18881643 GCCGGCCGGAGAGGCATAATCCACAAGCCGAGGATCGACCCGATCCCCCTCTAAGTGCTGTCGGT
65 GCCGGCCGAAGAGGCATAATCCACAAGCCGAGGATCGACCCGATCCCCCTCTAAGTGCTGTCGGT
* * * *
18881708 CCCGCTGCGACAACCCTTGGTCCGACTGGA
130 CCCACTGCCACAACCCTCGGTCCGACTCGA
18881738 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
18881781 GGCGTGCGGG
Statistics
Matches: 283, Mismatches: 72, Indels: 13
0.77 0.20 0.04
Matches are distributed among these distances:
158 2 0.01
159 195 0.69
160 86 0.30
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGGGGGCGCTAAG
CCGGCCGAAGAGGCATAATCCACAAGCCGAGGATCGACCCGATCCCCCTCTAAGTGCTGTCGGTC
CCACTGCCACAACCCTCGGTCCGACTCGA
Found at i:18881896 original size:26 final size:26
Alignment explanation
Indices: 18881867--18881916 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
18881857 CCGATTAGAT
*
18881867 CTTAGATTGGGAAT-ATACTCCGTATG
1 CTTAGACTGGGAATGA-ACTCCGTATG
*
18881893 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18881917 GGACTAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18881980 original size:13 final size:13
Alignment explanation
Indices: 18881962--18881988 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18881952 CTCAACCAGC
18881962 CGGAGAGGTCGAT
1 CGGAGAGGTCGAT
18881975 CGGAGAGGTCGAT
1 CGGAGAGGTCGAT
18881988 C
1 C
18881989 AGAAAGGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.19, G:0.44, T:0.15
Consensus pattern (13 bp):
CGGAGAGGTCGAT
Found at i:18882140 original size:26 final size:26
Alignment explanation
Indices: 18882090--18882142 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18882080 CCGAGCCGAT
*
18882090 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTACGTATG
*
18882116 CTTAGACAT-GGAATGAACTATGTATG
1 CTTAGA-ATGGGAATGAACTACGTATG
18882142 C
1 C
18882143 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTACGTATG
Found at i:18882459 original size:159 final size:159
Alignment explanation
Indices: 18882115--18882617 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 159
18882105 AACTCCGTAT
** * * * *
18882115 GCTTAGACATGGAATGAACTATGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * *
18882180 TCGGTCGGAGAGGCAGAATGCTCAAGTCAAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
18882245 TGCTGCCACAACCCTCGGTCCGGTCCAAT
131 CGCTGCCACAACCCCCGGTCCGGTCCAAG
* * ** *
18882274 G-TTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
** * * *
18882337 GCCGATCGGAGAGGCCTAATACGCAAGCCAGGGATC-AGCCTGGTCCCTCTCTGCGTGCTGTCGA
65 GCCGATCGGAGAGGCAGAATACGCAAGCCAAGGATCGA-CCCGGTCCC-CCCTGCGTGCTGTCGA
***
18882401 TCCCGCTGCCACAACCCCCGGTCCGG-CTGGG
128 TCCCGCTGCCACAACCCCCGGTCCGGTCCAAG
* * *
18882432 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
** ** * * * ** * * *
18882497 CCGGCCAAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGTTCCCCACTGCGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * ** * *
18882562 TGTTGCCGCAACCCTTGGTCTGGTCCGA-
131 CGCTGCCACAACCCCCGGTCCGGTCCAAG
* *
18882590 TCTTAGAC-TAGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18882618 TTAGACTAGG
Statistics
Matches: 276, Mismatches: 60, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 145 0.53
159 127 0.46
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CCGATCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCCCGGTCCGGTCCAAG
Found at i:18882643 original size:26 final size:26
Alignment explanation
Indices: 18882591--18882643 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18882581 CTGGTCCGAT
* *
18882591 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
**
18882617 CTTAGACTAGGGGTGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
18882643 C
1 C
18882644 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:18883010 original size:26 final size:26
Alignment explanation
Indices: 18882972--18883024 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18882962 TCGATCCAAT
*
18882972 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18882998 CTTAGACAT-GGAATGAACTCAGTATG
1 CTTAGAC-TGGGAATGAACTCAGTATG
18883024 C
1 C
18883025 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:18883509 original size:26 final size:26
Alignment explanation
Indices: 18883473--18883525 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18883463 CCGGTTCGAT
*
18883473 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18883499 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18883525 C
1 C
18883526 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18883707 original size:26 final size:26
Alignment explanation
Indices: 18883669--18883721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18883659 CCGATCTGAT
*
18883669 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
18883695 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
18883721 C
1 C
18883722 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18883966 original size:697 final size:699
Alignment explanation
Indices: 18882924--18884253 Score: 1595
Period size: 697 Copynumber: 1.9 Consensus size: 699
18882914 CTGCGTGCTG
* ** * *
18882924 TCGATCCTACGGTTGGTCCTGCTACCTCAACCCTCGATTCGATCCAATCTTAGACTGGGAATGAA
1 TCGATCCTACGGTCGGTCCTGCTACAGCAACCCTCGATCCGATCCAATCTTAGACTAGGAATGAA
* * *
18882989 CTCTGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCATGAAACGAGCGTACAA
66 CTCTATATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAACGTACAA
* * * * *
18883054 GCACTCAACCGCTTGGAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGTT
131 GCACTCAACCGCTCGAAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGATCCCCCCTACGTGCT
* * *
18883119 GTCGATCCTGCTACCACAACCCTCAGTCTGATCCGATCTTAGACTGGGACTGAACTCCGTATGCC
196 ATCGATCCTGCTACCACAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* ** * ** * *
18883184 TAATTCAACCCACGAAATGAACGTGTGGAAGCTGAGCCAGTTGGAGAGGCATAATGCGTAAGCTA
261 TAAGTCAACCCAAAAAATGAACGTGTCGAAGCTGAGCCAGTCAGAGAGGCATAATGAGCAAGCTA
* * ** * * *
18883249 GGGATCGGCCTGATCCCCCTCTGTGTGCTGTAGGACCTGCTAG-CACAACTC-TCAGTCCGGCTG
326 GGGATCAGCCCGATCCCCCTCTACGTGCTGCAGGACCTG-TAGCCACAAC-CGTCAGTCCGACTA
* * * * *
18883312 GGGTTTAGACATGGAATGAACTCGCTATGCCTAAGCCAGCTCATGAAATGGGCGTACGGGCGCTC
389 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACAGGCGCTC
* *
18883377 AG-CTGATCAGG-GAGGCAGAATGCGTAAGTCAG-GGATCGGCTCGATCCCTCC-TGCGTGCTAC
454 AGTCAGA--AGGAGAGGCAGAATGCGTAAG-CAGAGGATCAGCTCGATCCC-CCTTGCGTGCTAC
18883438 CGATCCTATG-GCCGCAACCCTCGGTCCGG-T-T-CGATCTTAGACTGGGAATGAACTCCT-TAT
515 CGAT-CT-TGCGCCGCAACCCTCGGTCCGGTTATCCGATCTTAGACTGGGAATGAACT-CTGTAT
* *
18883498 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCTGAAGA
577 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCTGAAGA
18883563 AGCCGATCGGAAAGCTAGAAATCATAAGTCGGGGATCAACTCGGACCCCCCGCGTCTA
642 AGCCGATCGGAAAGCTAGAAATCATAAGTCGGGGATCAACTCGGACCCCCCGCGTCTA
* * **
18883621 TCGATCCTACTGTCGGTCCTGCTGCAGCAACCCTC-AGTCCGATCTGATCTTAGACTAGGAATGA
1 TCGATCCTACGGTCGGTCCTGCTACAGCAACCCTCGA-TCCGATCCAATCTTAGACTAGGAATGA
*
18883685 ACTCTATATGCTTAGACATGGAATGAACTCCA-TATGCCTAAGCCAACCCACGAAACGAACGTGC
65 ACTCTATATGCTTAGACATGGAATGAACT-CAGTATGCCTAAGCCAACCCACGAAACGAACGTAC
* * * * * ** *
18883749 -GGTCGCTTAGCCGGTCGAAGAGGTAGAATGCGTAAG-TCGGGGA-CTAGCTTGATCCTCCCTAC
129 AAG-CACTCAACCGCTCGAAGAGGTAGAATGCGTAAGCT-GGGGATC-AGCCCGATCCCCCCTAC
* * *
18883811 GTGCTATCTATCCTGCTGCCACAACCCTC-GTTCT-AGTCCAATCTTTGACTGGGAATGAACTCC
191 GTGCTATCGATCCTGCTACCACAACCCTCAG-TCTGA-TCCAATCTTAGACTGGGAATGAACTCC
** * *
18883874 GTATGCCTAAGTCAACCCAAAAAATGAGGGT-TCG-AGCGTTGAG-TAGGTCAGCGAGGCATAAT
254 GTATGCCTAAGTCAACCCAAAAAATGAACGTGTCGAAGC--TGAGCCA-GTCAGAGAGGCATAAT
* * * * * * **
18883936 GAGCAAGCTGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCCGGTCTTGTTGCCACAACCGTTGG
316 GAGCAAGCTAGGGATCAGCCCGATCCCCCTCTACGTGCTGCAGGACCTGTAGCCACAACCGTCAG
* * * *
18884001 TCCGACTATGGCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCGTGAAATGGGCTTAC
381 TCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTAC
* *
18884066 AGGCGCTCAGTCAGAAGGAGAGGTAGAATGCGTAAGCCGAGGATCAGCTCGATCCCCCTTGCGTG
446 AGGCGCTCAGTCAGAAGGAGAGGCAGAATGCGTAAGCAGAGGATCAGCTCGATCCCCCTTGCGTG
** * *
18884131 CTGTCGATCTTGCTGCCGTAACCCTCGGTCCGGTTCGATCCGATCTTAGATTGGGAATGAACTCT
511 CTACCGATCTTGC-GCCGCAACCCTCGGTCCGGTT--ATCCGATCTTAGACTGGGAATGAACTCT
**
18884196 GTATGCTTAGACTAGGGATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTG
573 GTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
18884254 TGGACGCTCA
Statistics
Matches: 529, Mismatches: 80, Indels: 43
0.81 0.12 0.07
Matches are distributed among these distances:
695 5 0.01
696 21 0.04
697 419 0.79
698 6 0.01
701 3 0.01
702 75 0.14
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (699 bp):
TCGATCCTACGGTCGGTCCTGCTACAGCAACCCTCGATCCGATCCAATCTTAGACTAGGAATGAA
CTCTATATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAACGTACAA
GCACTCAACCGCTCGAAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGATCCCCCCTACGTGCT
ATCGATCCTGCTACCACAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCAAAAAATGAACGTGTCGAAGCTGAGCCAGTCAGAGAGGCATAATGAGCAAGCTA
GGGATCAGCCCGATCCCCCTCTACGTGCTGCAGGACCTGTAGCCACAACCGTCAGTCCGACTAGG
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACAGGCGCTCAG
TCAGAAGGAGAGGCAGAATGCGTAAGCAGAGGATCAGCTCGATCCCCCTTGCGTGCTACCGATCT
TGCGCCGCAACCCTCGGTCCGGTTATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
AGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCTGAAGAAGCCGATCG
GAAAGCTAGAAATCATAAGTCGGGGATCAACTCGGACCCCCCGCGTCTA
Found at i:18884938 original size:26 final size:26
Alignment explanation
Indices: 18884886--18884938 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18884876 GGCTCAAACT
*
18884886 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
18884912 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
18884938 C
1 C
18884939 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:18885264 original size:26 final size:26
Alignment explanation
Indices: 18885228--18885280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18885218 TTGGTTAGAT
18885228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18885254 CTTAGACTGGGGATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18885280 C
1 C
18885281 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18886413 original size:158 final size:157
Alignment explanation
Indices: 18885912--18886416 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 157
18885902 ACTCTGTATG
* * *
18885912 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGGTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCTTAATCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** * * * * * * * *
18885977 TTGCCATAGAGGTAGAATGCACAAGCCGGGGACCAGCTCGGTCCCCCCTGCGTGCTATCGATCCT
66 CGGTCAAAGAGGTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* *
18886042 ACTACTGCAACCCTCGATCTTGTCCGAT
131 ACTACCGCAACCCTCGGTC-TGTCCGAT
* * * *
18886070 CCTAGAC-TGGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAATGAGCGTACGGGCGCTAA
1 CTTAGACAT-GGAATGAACTCCGTATGCTTAA-TCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
18886133 GCCGATCGAAGAGGCATAATGCACAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTGTCGGT
64 GCCGGTCAAAGAGGTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGAT
** * * * **
18886198 CCCGCTACCACAACCCTCGGTCTGGCTGGGG
128 CCTACTACCGCAACCCTCGGTCTGTC-CGAT
* * * * * *
18886229 CTTAGACATGGAATGAACTCCCTATGCTTACTCCAACCCATGAAACG-GATGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCTTAATCCAACCCACGAAATGAG-CGTGCGGGCGCTCAG
* *
18886293 CCGGTCAAAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGATCACCCCTGCGTGCTGTCGATCC
65 CCGGTCAAAGAGGTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* *
18886358 TACTGCCGCAACCCTCGGTCTGATCCAAT
130 TACTACCGCAACCCTCGGTCTG-TCCGAT
18886387 CTTAGAC-TGGGAATGAACTCCGTATGCTTA
1 CTTAGACAT-GGAATGAACTCCGTATGCTTA
18886417 GACTGAGGAT
Statistics
Matches: 276, Mismatches: 62, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 154 0.56
159 119 0.43
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCTTAATCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGTCAAAGAGGTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
ACTACCGCAACCCTCGGTCTGTCCGAT
Found at i:18886428 original size:26 final size:26
Alignment explanation
Indices: 18886387--18886439 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18886377 CTGATCCAAT
*
18886387 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18886413 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
18886439 C
1 C
18886440 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18887826 original size:26 final size:26
Alignment explanation
Indices: 18887797--18887849 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18887787 TCGATCTGAT
18887797 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
18887823 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
18887849 C
1 C
18887850 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:18888033 original size:26 final size:26
Alignment explanation
Indices: 18888004--18888056 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18887994 CCGGTCCAAT
18888004 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
* *
18888030 CTTAGATATGGAATGAACTCTGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
18888056 C
1 C
18888057 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:18888332 original size:159 final size:158
Alignment explanation
Indices: 18888032--18888460 Score: 468
Period size: 159 Copynumber: 2.7 Consensus size: 158
18888022 TCCGTATGCT
* * * * *
18888032 TAGATATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTTAGTCG
1 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CC
* **
18888097 GTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCATGCGTGCTGTCAATCCTG
65 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCATGCGTGCTGTCAATCCCA
** ** * *
18888162 CTGTCGTAACCCTCGG-TCTGATCT-GATCA
130 CTACCACAACCCTCGGTTC-G-GCTGGAGCA
* * * *
18888191 TAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCA
1 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-
* * * * **
18888256 GTCGGAAAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCACTC-TGCGTGCTGTCGGTCCC
65 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCCATGCGTGCTGTCAATCCC
* *
18888320 ACTACCACAACCCTCGGTTCGGCTGGGGCT
129 ACTACCACAACCCTCGGTTCGGCTGGAGCA
* * * * *
18888350 TAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCGGGCGCTCAGCCG
1 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * **
18888415 GCTGGAGAGGCAGAATGCGTAAGCCGGTAATCGGCCCGATCCCCCC
66 TC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCC
18888461 TGCATGATGC
Statistics
Matches: 223, Mismatches: 42, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
158 7 0.03
159 212 0.95
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCATGCGTGCTGTCAATCCCAC
TACCACAACCCTCGGTTCGGCTGGAGCA
Found at i:18888557 original size:26 final size:26
Alignment explanation
Indices: 18888506--18888558 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18888496 CCGGTCCGAT
*
18888506 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18888532 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18888558 C
1 C
18888559 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18889156 original size:159 final size:158
Alignment explanation
Indices: 18888809--18889254 Score: 407
Period size: 159 Copynumber: 2.8 Consensus size: 158
18888799 CCCCAAATTT
* *
18888809 GGTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCTACGAAACCGA-CGTGCAGGCACCCAA
1 GGTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTGCAGGCACCCAA
** * * * *
18888873 CCGGTCGGAGAGGCAGAATGCGTAAGCCAGAGATCGGCCCGGTCCCCCCTGCTTGCTGTCGATCC
65 CCAATCGGAGAGCCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCCTGCCTGCTGTCGATCC
* * * *
18888938 TGCTGCCGCAACCCTCGATCCGGTCTGAT
130 CGCTGCCACAACCCTCGATCCAGTCTGAG
** * * **** *
18888967 GGTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGCGTTGAG
1 GGTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACCCAA
* * * * *
18889031 CCAATCGGAGAGCCATAATGTGCAAGCCAGGGATCGGCCCGATCCCACTCTGCCTGCTGTCGGTC
65 CCAATCGGAGAGCCAGAATGCGCAAGCCAGAGATCGGCCCGATCCC-CCCTGCCTGCTGTCGATC
* * *
18889096 CCGCTGCCATAACCCTCTATCTAG-CTG-G
129 CCGCTGCCACAACCCTCGATCCAGTCTGAG
* * * * * * *
18889124 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCA
1 GG--TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACCCA
* * * * * * * *
18889189 ACCGATCGGAGAGGCAGAATGCACAGGCCGGGGATCGGCTCGATCCCCCCTGCATGC-GATCGAT
64 ACCAATCGGAGAGCCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCCTGCCTGCTG-TCGAT
18889253 CC
128 CC
18889255 TACTGTCATA
Statistics
Matches: 230, Mismatches: 51, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 7 0.03
158 102 0.44
159 120 0.52
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GGTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACCCAAC
CAATCGGAGAGCCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCCTGCCTGCTGTCGATCCC
GCTGCCACAACCCTCGATCCAGTCTGAG
Found at i:18889325 original size:25 final size:26
Alignment explanation
Indices: 18889284--18889335 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
18889274 CCGATCCGTT
*
18889284 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18889310 CTTAGAC-ATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18889335 C
1 C
18889336 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18889479 original size:184 final size:184
Alignment explanation
Indices: 18889125--18889494 Score: 462
Period size: 183 Copynumber: 2.0 Consensus size: 184
18889115 TCTAGCTGGG
* ** *
18889125 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCGCTCAA
*
18889190 CCGATCGGAGAGGCAGAATGCACAGGCCGGGGATCGGCTCGATCCCCCCTGCATGCGATCGATCC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGATCCCCCCTGCATGCGATCGATCC
* *
18889255 TACTGTCATAACCCTCAGTCCGATCCGTTCTTAGACTAGGAATGAACT-TCGTAT
131 TACTATCATAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCT-GTAT
* * * * **
18889309 GCTTAGACAT-GAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAACGTGCAGGCGCTCTG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCGCTCAA
** * * *
18889373 CCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGC-CTGGTCCCCCCCTGCGTGCTG-TCGA
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTC-GAT-CCCCCCTGCATGC-GATCGA
* * * *
18889436 TCCTACTATCGTAACCCTC-GATCTGGTCTGATCTTAGACTAGGAATGAACTCTGTAT
128 TCCTACTATCATAACCCTCAG-TCCGATCCGATCTTAGACTAGGAATGAACTCTGTAT
18889493 GC
1 GC
18889495 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
182 1 0.01
183 81 0.51
184 75 0.47
185 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCGCTCAA
CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGATCCCCCCTGCATGCGATCGATCC
TACTATCATAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCTGTAT
Found at i:18889611 original size:159 final size:157
Alignment explanation
Indices: 18889309--18889710 Score: 360
Period size: 159 Copynumber: 2.5 Consensus size: 157
18889299 AACTTCGTAT
* * *
18889309 GCTTAGACATGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAACGTGCAGGCGCTCTGC
1 GCTTAGACAGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAACGTGCAGGCACTCAGC
* * ** * * ** *
18889374 CGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGATCC
65 CGACCGAAGAGGCAGAATGCACAAACCGAAGATCAGCCTGGTCCCCCCCTGCGTGCTGTCGATCC
* * ** * *
18889439 TACTATCGTAACCCTCGATCTGGTCT-GA
130 CACTACCACAACCCTCGATCCGAT-TGGA
* * * * *
18889467 TCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTTCGGGCACTGAG
1 GCTTAGAC-AGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAACGTGCAGGCACTCAG
* * * *
18889532 CCGACCGAAGAGTCATAATGCACAAACCGAAGATCAGTCTGGTCCCCCTCTGCGTGCTGTC-AGT
64 CCGACCGAAGAGGCAGAATGCACAAACCGAAGATCAGCCTGGTCCCCCCCTGCGTGCTGTCGA-T
* * * *
18889596 CCCGCTGCCACAACCCTCGGTCCGATTGGG
128 CCCACTACCACAACCCTCGATCCGATTGGA
* * ** * *
18889626 GATTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAATGGGCATGCA-GCTCTCAG
1 GCTTAGACA-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAACGTGCAGGCACTCAG
* * *
18889690 TCGATCGAACAGGCAGAATGC
64 CCGACCGAAGAGGCAGAATGC
18889711 GCAAGTCGAG
Statistics
Matches: 191, Mismatches: 48, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
158 32 0.17
159 158 0.83
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACAGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAACGTGCAGGCACTCAGCC
GACCGAAGAGGCAGAATGCACAAACCGAAGATCAGCCTGGTCCCCCCCTGCGTGCTGTCGATCCC
ACTACCACAACCCTCGATCCGATTGGA
Found at i:18889828 original size:501 final size:500
Alignment explanation
Indices: 18888811--18889938 Score: 1225
Period size: 500 Copynumber: 2.3 Consensus size: 500
18888801 CCAAATTTGG
* * * * * *
18888811 TAGACATGAAATGAACTCCGTATGCCTAAGCCAACCTACGAAACCG-ACGTGCAGGCACCCAACC
1 TAGACATG-AATGAACTCCGTATGCCTAAGCTAACCCACGAAA-TGAACGTGCAGGCGCTCAGCC
* ** * *
18888875 GGTCGGAGAGGCAGAATGCGTAAGCCAGAGATCGGCCCGGT-CCCCCCTGCTTGCTGTCGATCCT
64 GATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCCCTGCATGCTGTCGATCCT
* * * * *
18888939 GCTGCCGCAACCCTCGATCCGGTCTGATGGTAGACTGGGAATGAACTTTGTATGCCTAAGTCAAC
129 ACTACCGCAACCCTCGATCCGGTCTGATCGTAGACTAGGAATGAACTCTGTATGCCTAAGTCAAC
* ** * * ** * * *
18889004 CCACGAAACGAGCGTTCAGGCGTTGAGCCAATCGGAGAGCCATAATGTGCAAGCCAGGGATCGGC
194 CCACGAAACGAACGTTCAGGCACTGAGCCAACCGAAGAGCCATAATGCACAAACCAGAGATCAGC
* * * * *
18889069 CCGATCCCACTCTGCCTGCTGTCGGTCCCGCTGCCATAACCCTCTATCTAGCTGGGGCTTAGACA
259 CCGATCCCACTCTGCCTGCTGTCAGTCCCGCTGCCACAACCCTCGATCGAGCTGGGGATTAGACA
* * * *
18889134 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAACCGATCGGA
324 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGAGCGCTCAACCGATCGAA
* * * *
18889199 GAGGCAGAATGCACAGGCCGGGGATCGGCTCGATCCCCCCTGCATGCGATCGATCCTACTGTCAT
389 CAGGCAGAATGCACAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCGACCGATCCTACTGTCA-
* *
18889264 AACCCTCAGTCCGATCCGTTCTTAGACTAGGAATGAACTTCGTATGCT
453 AACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCT
*
18889312 TAGACATGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAACGTGCAGGCGCTCTGCCGA
1 TAGACATGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAACGTGCAGGCGCTCAGCCGA
* *
18889377 TCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGATCCTAC
66 TCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCCCTGCATGCTGTCGATCCTAC
* * * *
18889442 TATCGTAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCC
131 TACCGCAACCCTCGATCCGGTCTGATCGTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCC
* * * * *
18889507 ACGAAATGAACGTTCGGGCACTGAGCCGACCGAAGAGTCATAATGCACAAACC-GAAGATCAGTC
196 ACGAAACGAACGTTCAGGCACTGAGCCAACCGAAGAGCCATAATGCACAAACCAG-AGATCAGCC
* * * * * *
18889571 TGGTCCCCCTCTGCGTGCTGTCAGTCCCGCTGCCACAACCCTCGGTCCGA-TTGGGGATTAGACA
260 CGATCCCACTCTGCCTGCTGTCAGTCCCGCTGCCACAACCCTCGAT-CGAGCTGGGGATTAGACA
* * * * * **
18889635 TGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAATGGGCATGC-AGCTCTCAGTCGATCGAA
324 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGAGCGCTCAACCGATCGAA
* * * * * **
18889699 CAGGCAGAATGCGCAAGTCGAGGATCGG-TATGATCCCCCCTGCGTGCTACCGATCCTGTTGCTG
389 CAGGCAGAATGCACAAGCCGAGGATCGGCT-CGATCCCCCCTGCATGCGACCGATCCTACTG-T-
* * * *
18889763 C-AACCCTCAGTTCGGTCTGATCTTATG-CTAGGAATGAGCTCCGTATGCT
451 CAAACCCTCAGTCCGATCCGATCTTA-GACTAGGAATGAACTCCGTATGCT
* * * * * * *
18889812 TAGAC-TGGGGATGAACTCTGTATGCCTAAG-TCAA-CCATGGAATGAGCATGCGGGCGCTCAGC
1 TAGACAT--GAATGAACTCCGTATGCCTAAGCT-AACCCACGAAATGAACGTGCAGGCGCTCAGC
* * * ** * * * * *
18889874 CGATCGAAGATGCATAATGCACAAGCTGAGGATCAGCCCAGTCCCCCTCTGCATGCTGTCAATCC
63 CGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCCCTGCATGCTGTCGATCC
18889939 CGCTGCTGGT
Statistics
Matches: 520, Mismatches: 96, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
499 3 0.01
500 265 0.51
501 249 0.48
502 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (500 bp):
TAGACATGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAACGTGCAGGCGCTCAGCCGA
TCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCCCTGCATGCTGTCGATCCTAC
TACCGCAACCCTCGATCCGGTCTGATCGTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCC
ACGAAACGAACGTTCAGGCACTGAGCCAACCGAAGAGCCATAATGCACAAACCAGAGATCAGCCC
GATCCCACTCTGCCTGCTGTCAGTCCCGCTGCCACAACCCTCGATCGAGCTGGGGATTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGAGCGCTCAACCGATCGAACA
GGCAGAATGCACAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCGACCGATCCTACTGTCAAAC
CCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCT
Found at i:18892034 original size:26 final size:26
Alignment explanation
Indices: 18891993--18892045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18891983 CTGATCTGAT
*
18891993 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18892019 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18892045 C
1 C
18892046 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18892765 original size:26 final size:26
Alignment explanation
Indices: 18892726--18892778 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18892716 GGCACAAACT
18892726 CTTAGACTGCGAATAAACTCCATATG
1 CTTAGACTGCGAATAAACTCCATATG
* *
18892752 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGCGAATAAACTCCATATG
18892778 C
1 C
18892779 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATAAACTCCATATG
Found at i:18893037 original size:157 final size:156
Alignment explanation
Indices: 18892751--18893052 Score: 385
Period size: 157 Copynumber: 1.9 Consensus size: 156
18892741 AACTCCATAT
* * *
18892751 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGACGCTCAG
* * * ** *
18892816 CCGGTCGGAAAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCTCTTTGTTCTCTGATCC
66 CCGGTCGGAAAGGCAGAATGCGCAAGTCAGAGATCGACCCGGTCCCCCTCTACGTGCTCTGATCC
18892881 CGCTGCCACAACCCTCGATCGGCTGGG
131 CGCTGCC-CAACCCTCGATCGGCTGGG
* *
18892908 GCTTACACATGGAATGAACTCTC-TATGCCTAAGCCAAACCATGAAACGGGCGTGCGGATGCTCA
1 GCTTACACATGGAATGAACTC-CGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGACGCTCA
* * * * *
18892972 GTCGGTCGGAGAGGCAGAATGCGTAAG-CTAGAGATCGGCCCGGTCCCCC-CTACGTGCTGTCGA
65 GCCGGTCGGAAAGGCAGAATGCGCAAGTC-AGAGATCGACCCGGTCCCCCTCTACGTGCTCT-GA
* *
18893035 TCCTGCTGCCTAACCCTC
128 TCCCGCTGCCCAACCCTC
18893053 AGTCCAGTCT
Statistics
Matches: 124, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
156 15 0.12
157 108 0.87
158 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGACGCTCAG
CCGGTCGGAAAGGCAGAATGCGCAAGTCAGAGATCGACCCGGTCCCCCTCTACGTGCTCTGATCC
CGCTGCCCAACCCTCGATCGGCTGGG
Found at i:18893092 original size:157 final size:157
Alignment explanation
Indices: 18892751--18893092 Score: 372
Period size: 157 Copynumber: 2.2 Consensus size: 157
18892741 AACTCCATAT
** * *
18892751 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGACGCTCAG
* * * ** *
18892816 CCGGTCGGAAAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCTCTTTGTTCTCTGATCC
66 CCGGTCGGAAAGGCAGAATGCGCAAGTCAGAGATCGACCCGGTCCCCCTCTACGTGCTCTGATCC
*
18892881 CGCTGCCACAACCCTCGATCGGCTGGG
131 CGCTGCCACAACCCTCGATCGGCTGGA
* * * *
18892908 GCTTACACATGGAATGAACTCTCTATGCCTAAGCCAAACCATGAAACGGGCGTGCGGATGCTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGACGCTCAG
* * * * *
18892973 TCGGTCGGAGAGGCAGAATGCGTAAG-CTAGAGATCGGCCCGGTCCCCC-CTACGTGCTGTCGAT
66 CCGGTCGGAAAGGCAGAATGCGCAAGTC-AGAGATCGACCCGGTCCCCCTCTACGTGCTCT-GAT
* * *
18893036 CCTGCTGCC-TAACCCTC-AGTCCAGTCT-GA
129 CCCGCTGCCACAACCCTCGA-T-C-GGCTGGA
*
18893065 TCTTAGAC-TGGGAATGAACTCTATATGC
1 GCTTAGACAT-GGAATGAACTCTATATGC
18893093 TTAGACTGGG
Statistics
Matches: 154, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
155 1 0.01
156 17 0.11
157 133 0.86
158 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGACGCTCAG
CCGGTCGGAAAGGCAGAATGCGCAAGTCAGAGATCGACCCGGTCCCCCTCTACGTGCTCTGATCC
CGCTGCCACAACCCTCGATCGGCTGGA
Found at i:18893117 original size:26 final size:26
Alignment explanation
Indices: 18893066--18893118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18893056 CCAGTCTGAT
*
18893066 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18893092 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18893118 C
1 C
18893119 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18893291 original size:26 final size:26
Alignment explanation
Indices: 18893262--18893314 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18893252 TCGATCTGAT
18893262 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
18893288 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
18893314 C
1 C
18893315 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:18893383 original size:196 final size:196
Alignment explanation
Indices: 18893060--18893422 Score: 494
Period size: 196 Copynumber: 1.9 Consensus size: 196
18893050 CTCAGTCCAG
* *
18893060 TCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * ** ** * * * *
18893125 TAACCCACGAAATGAGCGTGCGGGCATTCAGTCGGTCAAAGAGGTAGAATGCTCAAGCCGAGGAT
66 CAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAAAGAGGCAAAATGCGCAAGCCGAGGAC
* *
18893190 CGACCTGGTGCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCCTGCTATCGTAAACCTCAGTTCG
131 CGACCCGATGCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCCTGCTATCGTAAACCTCAGTTCG
18893255 A
196 A
* *
18893256 TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAG
1 TCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
** **
18893320 CCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGCAGAGGCAAAATGCGCAAGCCGAGGA
65 CCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAAAGAGGCAAAATGCGCAAGCCGAGGA
* * *
18893385 CCGACCCGATGCCCTCTGCGTGCTGTCGATCCTGCTGC
130 CCGACCCGATGCCCCCTGCGTGCTGCCGATCCTACTGC
18893423 CACAACCCTC
Statistics
Matches: 142, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
196 141 0.99
197 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
TCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAAAGAGGCAAAATGCGCAAGCCGAGGAC
CGACCCGATGCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCCTGCTATCGTAAACCTCAGTTCG
A
Found at i:18893551 original size:158 final size:155
Alignment explanation
Indices: 18893288--18893789 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 155
18893278 ACTCTGTATG
* * *
18893288 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGTGTGCGGGCGCT-AA
* * * * *
18893352 CCGACCGCAGAGGCAAAATGCGCAAGCCGAGGACCGACCCGATGCCCTCTGCGTGCTGTCGATCC
63 CTGACCGGAGAGGCAAAATGCGCAAGCAG-GGATCGACCCGATCCCCTCTGCGTGCTGTCGATCC
18893417 TGCTGCCACAACCCTCAGTCCGGTCTGAT
127 TGCTGCCACAACCCTCAGTCCGGTCTGAT
* *
18893446 CTTTGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGTGTGCGGGCGCT-AAC
* * *
18893511 TGACCGGAGAGGCATAATGCGCAAGCTAGGGATC-AGCCCGATCCCCCTCTGGGTGTTGTCGAT-
64 TGACCGGAGAGGCAAAATGCGCAAGC-AGGGATCGA-CCCGAT-CCCCTCTGCGTGCTGTCGATC
* * **
18893574 -TGCACTGCCACAACCCTCATTCCAG-CTGGGG
126 CTG--CTGCCACAACCCTCAGTCCGGTCT-GAT
* * * * * *
18893605 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGTGTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGTGTGCGGGCGCTAAC
** * * * * * *
18893669 TCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCC
64 T-GACCGGAGAGGCAAAATGCGCAAG-CAGGGATCGACCCGATCCCCTCTGCGTGCTGTCGATCC
* * ** * *
18893734 TGCTACCGCAACCCTTGGTCTGGTCCGAT
127 TGCTGCCACAACCCTCAGTCCGGTCTGAT
18893763 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18893790 TTAGATTGGG
Statistics
Matches: 281, Mismatches: 47, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
157 5 0.02
158 150 0.53
159 121 0.43
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGTGTGCGGGCGCTAACTG
ACCGGAGAGGCAAAATGCGCAAGCAGGGATCGACCCGATCCCCTCTGCGTGCTGTCGATCCTGCT
GCCACAACCCTCAGTCCGGTCTGAT
Found at i:18893792 original size:26 final size:26
Alignment explanation
Indices: 18893763--18893815 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18893753 CTGGTCCGAT
18893763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
18893789 CTTAGATTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18893815 C
1 C
18893816 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18894011 original size:26 final size:26
Alignment explanation
Indices: 18893973--18894025 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18893963 TCGGTCCGAT
*
18893973 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18893999 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18894025 C
1 C
18894026 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18894137 original size:711 final size:694
Alignment explanation
Indices: 18892752--18894183 Score: 1746
Period size: 711 Copynumber: 2.0 Consensus size: 694
18892742 ACTCCATATG
* *
18892752 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** * * * *
18892816 CCGGTCGGAAAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCTCTTTGTTCTCTGATCC
65 CCGACCGGAAAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCTCTGTGTTCTCTGATCC
* * *
18892881 CGCTGCCACAACCCTCGATCGGCTGGGGCTTACACATGGAATGAACTCTCTATGCCTAAGCCAAA
130 CACTGCCACAACCCTCGATCAGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAAA
* * * * * *
18892946 CCATGAAACGGGCGTGCGGATGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCTAGAGATCGGC
195 CCATGAAACGGGCGTACGGACGCTCAGTCGGTCAGAGAGGCAGAATGCGCAAGCCAGAGATCGAC
* * *
18893011 CCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCTAACCCTCAGTCCAGTCTGATCTTAGACTGG
260 CCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCCAACCCTCAGTCCAGTCCGATCTTAGACTGG
* * *
18893076 GAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAG
325 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAA
* * * * * *
18893141 CGTGCGGGCATTCAGTCGGTCAAAGAGGTAGAATGCTCAAGCCGAGGATCGACCTGGTGCCCCCT
390 CGTGCGGGCATTCAGTCAGCCAAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGCTGCCCCCT
* * *
18893206 GCGTGCTGCCGATCCTACTGCTGGTCCTGCTATCGTAAACCTCAGTTCGATCTGATCTTAGACTG
455 GCGTGCTGCCGATCCTACTGCTGGTCCTACTACCGTAAACCTCAGTTCGATCCGATCTTAGACTG
*
18893271 GGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGA
520 GGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * * * *
18893336 GCGTGCGGGTGCTCAACCGACCGCAGAGGCAAAATGCGCAAGCCGAGGACCGACCCGATGCCCTC
585 GCGTACGGGAGCTCAACCGACCGCAGAGGCAAAATGCGCAAGCCGAGGACCGACCAGATCCCCCC
* * * * * *
18893401 TGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGAT
650 TACGTACTATCGATACTGCTGCCACAACACTCAGTCCAGTCTGAT
* * * * *
18893446 CTTTGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * *
18893511 TGACCGGAGAGGCATAATGCGCAAG-CTAGGGATC-AGCCCGATCCCCCTCTGGGTGTTGTC-GA
66 CGACCGGAAAGGCAGAATGCGCAAGTC-AGGGATCGA-CCCGATCCCCCTCT--GTGTTCTCTGA
** *
18893573 TTGCACTGCCACAACCCTC-ATTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
127 TCCCACTGCCACAACCCTCGA-T-CAGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAG
* * * * * *
18893637 CTAACCCATGAAACGGGTGTACGGGCGCTCAGTCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGA
190 CCAAACCATGAAACGGGCGTACGGACGCTCAGTCGGTCAGAGAGGCAGAATGCGCAAGCCAGAGA
* * ** **
18893702 TCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCTGGTCCGATCTTA
255 TCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACC-CAACCCTCAGTCCAGTCCGATCTTA
* * * *
18893767 GACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAAGTCCGTATGCCTAAGTCAACCCATGA
319 GACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
18893832 AATGAACGTGCGGGTGC-TTAGCCAACCGAAAATGCCAGCCAGAGAGGCAGAATGCGCAAGCTGG
384 AATGAACGTGC-GG-GCATT---C-A--G----T--CAGCCAAAGAGGCAGAATGCGCAAGCCGA
* * * * * * *
18893896 GGATTGGCCCGCTTCCACCCTGTGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGTAAACCTCG
435 GGATCGACCCGCTGCC-CCCTGCGTGCTGCCGATCCTACTGCTGGTCCTACTACCGTAAACCTCA
*
18893961 GTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGC
499 GTTCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGC
* * * *
18894026 CTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAGCC-AGTCGGAGAGGCAGAATGCGCAAGC
564 CTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAACCGA-CCGCAGAGGCAAAATGCGCAAGC
* * * * *
18894090 TGGGGATCGATCCAG-TCCCCCCTACGTACTATCGATACTGTTGCCACAACACTCGGTCCAGTCT
628 CGAGGACCGA-CCAGATCCCCCCTACGTACTATCGATACTGCTGCCACAACACTCAGTCCAGTCT
18894154 GAT
692 GAT
*
18894157 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18894184 TTAGATTGGG
Statistics
Matches: 618, Mismatches: 95, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
693 3 0.00
694 95 0.15
695 19 0.03
696 133 0.22
697 88 0.14
698 4 0.01
699 2 0.00
701 1 0.00
702 1 0.00
704 1 0.00
708 1 0.00
710 34 0.06
711 233 0.38
712 3 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (694 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGACCGGAAAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCTCTGTGTTCTCTGATCCC
ACTGCCACAACCCTCGATCAGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAAAC
CATGAAACGGGCGTACGGACGCTCAGTCGGTCAGAGAGGCAGAATGCGCAAGCCAGAGATCGACC
CGGTCCCCCCTACGTGCTGTCGATCCTGCTACCCAACCCTCAGTCCAGTCCGATCTTAGACTGGG
AATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAAC
GTGCGGGCATTCAGTCAGCCAAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGCTGCCCCCTG
CGTGCTGCCGATCCTACTGCTGGTCCTACTACCGTAAACCTCAGTTCGATCCGATCTTAGACTGG
GAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
CGTACGGGAGCTCAACCGACCGCAGAGGCAAAATGCGCAAGCCGAGGACCGACCAGATCCCCCCT
ACGTACTATCGATACTGCTGCCACAACACTCAGTCCAGTCTGAT
Found at i:18894185 original size:184 final size:183
Alignment explanation
Indices: 18893970--18894577 Score: 513
Period size: 184 Copynumber: 3.2 Consensus size: 183
18893960 GGTTCGGTCC
*
18893970 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
*
18894035 CCCACGAAACGAGCGTACGGGAGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAG-CTGGGGATCG
66 CCCATGAAACGAGCGTACGGGAGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGTC-GGGGATCG
* * *
18894099 ATCCAGTCCCCCCTACGTACTATCGATACTGTTGCCACAACACTCGGTCCAGTCT
130 A-CCGGTCCCCCCTGCGTGCTATCGATACTGTTGCCACAACACTCGGTCCAGTCT
* * * * *
18894154 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGA-TTGGGGACGAACTCCGTGTATGCCTAAGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCC--GTATGCCTAAGC
* * *
18894218 CAACCCATGAAACGAGCATGCGAGCA-CTCAGTCGACCGGAGAGGCTGGTCGGAGAGGCAGAATG
63 CAACCCATGAAACGAGCGTACG-GGAGCTCA---G-CC----A-----GTCGGAGAGGCAGAATG
* * * * *
18894282 CTCAAGTCGGGGATCGACCCGGTCTCCCCTGCATGCTGTGATCCTGCTACTGGTCCTGCTACCGT
114 CGCAAGTCGGGGATCGA-CCGGTCCCCCCTGCGTGC--T-AT-C-GATACT-GT--TGCCA-C--
** * * *
18894347 AA-ACCTTAGTTCAATCC
167 AACA-CTCGGTCCAGTCT
*
18894364 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
18894429 CCCATGAAATGAGCGTACGGGCGCTCAACCGGTCGGAGAGGTAGAATGCGTAAGTCAGAGACCGA
66 CCCATGAAACGAGCGTACGGGAGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGA
* * * * ** * *
18894494 CCTGGTCCCCTCTGTGTGCTGTCGATCCTACTGCCACAACCCTCGATCCAGTCT
131 CC-GGTCCCCCCTGCGTGCTATCGATACTGTTGCCACAACACTCGGTCCAGTCT
*
18894548 GATCTTAGACTGGGAATGAACTTCGTATGC
1 GATCTTAGACTGGGAATGAACTCCGTATGC
18894578 CTAAGTCAAC
Statistics
Matches: 328, Mismatches: 62, Indels: 68
0.72 0.14 0.15
Matches are distributed among these distances:
183 1 0.00
184 80 0.24
186 35 0.11
187 6 0.02
189 1 0.00
190 6 0.02
191 1 0.00
192 1 0.00
193 1 0.00
194 3 0.01
195 40 0.12
199 44 0.13
200 1 0.00
201 1 0.00
202 2 0.01
203 1 0.00
204 7 0.02
205 2 0.01
207 5 0.02
208 35 0.11
209 1 0.00
210 53 0.16
211 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.22
Consensus pattern (183 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCATGAAACGAGCGTACGGGAGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGA
CCGGTCCCCCCTGCGTGCTATCGATACTGTTGCCACAACACTCGGTCCAGTCT
Found at i:18894337 original size:394 final size:393
Alignment explanation
Indices: 18893604--18894577 Score: 1247
Period size: 394 Copynumber: 2.5 Consensus size: 393
18893594 TCCAGCTGGG
* * * *
18893604 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * *
18893669 TCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAC-CGGTCCCCCCTGCGTGCTGTCGATCC
* * * ** *
18893734 TGCTACCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGG
130 TGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGG
* * * * * ** *
18893799 GGATGAAGTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGCGGGTGCTTAGCCAACCGAAAA
195 GGACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACATGCGAGCACTCAGCCAACCGAAAA
* * * **
18893864 TGCCAGCCAGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGCTTCCACCCTGTGTGCTGTCGA
260 GGCCAGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGCTTCCACCCTGCATGCTGTCGA
* * **
18893929 TCCTGCTGCTGGTCCTACTACCGTAAACCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCT
325 TCCTGCTACTGGTCCTACTACCGTAAACCTCAGTTCAATCCGATCTTAGACTGGGAATGAACTCT
18893994 GTAT
390 GTAT
* *
18893998 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * *
18894063 CCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGATCCAGTCCCCCCTACGTACTATCGATAC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
18894128 TGTTGCCACAACACTCGGTCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGG
130 TGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGG
* * * *
18894193 GGACGAACTCCGTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCACTCAGTCGACCGGA
195 GGACGAACTCC--GTATGCCTAAGTCAACCCATGAAACGAACATGCGAGCACTCAGCCAACCGAA
* ** * * * *
18894258 GAGGCTGGTCGGAGAGGCAGAATGCTCAAG-TCGGGGATCGACCCG-GTCTC-CCCTGCATGCTG
258 AAGGCCAGCCAGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGCTTC-CACCCTGCATGCTG
* *
18894320 T-GATCCTGCTACTGGTCCTGCTACCGTAAACCTTAGTTCAATCCGATCTTAGACTGGGAATGAA
321 TCGATCCTGCTACTGGTCCTACTACCGTAAACCTCAGTTCAATCCGATCTTAGACTGGGAATGAA
18894384 CTCTGTAT
386 CTCTGTAT
* *
18894392 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
18894457 CCGGTCGGAGAGGTAGAATGCGTAAG-TCAGAGACCGACCTGGTCCCCTCTGTGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACC-GGTCCCCCCTGCGTGCTGTCGATC
* * *
18894521 CTACTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
129 CTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
18894578 CTAAGTCAAC
Statistics
Matches: 496, Mismatches: 77, Indels: 14
0.84 0.13 0.02
Matches are distributed among these distances:
393 3 0.01
394 401 0.81
395 15 0.03
396 77 0.16
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (393 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGG
GACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACATGCGAGCACTCAGCCAACCGAAAAG
GCCAGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGCTTCCACCCTGCATGCTGTCGAT
CCTGCTACTGGTCCTACTACCGTAAACCTCAGTTCAATCCGATCTTAGACTGGGAATGAACTCTG
TAT
Found at i:18894405 original size:26 final size:26
Alignment explanation
Indices: 18894367--18894419 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18894357 TCAATCCGAT
*
18894367 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18894393 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18894419 C
1 C
18894420 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18894887 original size:158 final size:156
Alignment explanation
Indices: 18894393--18894894 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 156
18894383 ACTCTGTATG
18894393 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAAC
* * * *
18894458 CGGTCGGAGAGGTAGAATGCGTAAGTCAGAGACCGACCTGGTCCCCTCTGTGTGCTGTCGATCCT
66 C-GTCGGAGAGGTAGAATGCGCAAGCCAGAGATCGGCC-GGTCCCCTCTGTGTGCTGTCGATCCT
* * ** *
18894523 ACTGCCACAACCCTCGATCCAGTCTGAT
129 GCTACCACAACCCTCGATCTGGTCCGAT
* * * * * *
18894551 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAA
* * * * * * * *
18894615 CCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCTCTCTGTGTGCTGTCGGTC
65 CCG-TCGGAGAGGTAGAATGCGCAAGCCAGAGATC-GGCCGGTCCC-CTCTGTGTGCTGTCGATC
* * **
18894680 CCGCTACCACAACCCTC-ATTCTGG-CTGGGG
127 CTGCTACCACAACCCTCGA-TCTGGTC-CGAT
* * * *
18894710 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG-GACGTGCGGGCGTTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAG-CGTACGGGCGCTCAA
* *
18894774 CCAGTCGGAGAGGTAGAATGCGCAAGCC-GAAGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATC
65 CC-GTCGGAGAGGTAGAATGCGCAAGCCAG-AGATCGGC-CGGTCCCCTCTGTGTGCTGTCGATC
* * *
18894838 CTGCTACCGCAACCCTTGGTCTGGTCCGAT
127 CTGCTACCACAACCCTCGATCTGGTCCGAT
*
18894868 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
18894895 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 53, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.01
158 151 0.55
159 121 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAAC
CGTCGGAGAGGTAGAATGCGCAAGCCAGAGATCGGCCGGTCCCCTCTGTGTGCTGTCGATCCTGC
TACCACAACCCTCGATCTGGTCCGAT
Found at i:18894904 original size:26 final size:26
Alignment explanation
Indices: 18894868--18894920 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18894858 CTGGTCCGAT
18894868 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
18894894 CTTAGACTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18894920 C
1 C
18894921 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18895117 original size:26 final size:26
Alignment explanation
Indices: 18895078--18895130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18895068 TTCATCCGAT
18895078 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
*
18895104 CTTAGACATG-GAATGAACTTTGTATG
1 CTTAGAC-TGAGAATGAACTCTGTATG
18895130 C
1 C
18895131 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:18895340 original size:711 final size:701
Alignment explanation
Indices: 18893998--18896357 Score: 2554
Period size: 711 Copynumber: 3.4 Consensus size: 701
18893988 AACTCTGTAT
* * *
18893998 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTACGGGAGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGA-CGTGCGGGAGCTCA
* * * * *
18894062 GCCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GATCCAGTCCCCCCTACGTACTATCGAT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCT-CGGTCCCCCCTACGTGCTATCGAT
* * * * * * * * * *
18894126 ACTGTTGCCACAACACTCGGTCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATT
129 CCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
* * * *
18894191 GGGGACGAACTCCGTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCACTCAGTCGACCG
194 GGGGATGAACTCC--GTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGACCA
* * * * * * * *
18894256 GAGAGGCTGGTCGGAGAGGCAGAATGCTCAAG-TCGGGGATCGACCCGGTCTCCCCTGCATGCTG
257 GAGAGGCCGGACGGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCCCGGTCCCCCCTGCGTGCTC
* * *
18894320 TGATCCTGCTACTGGTCCTGCTACCGTAAACCTTAGTTCAATCCGATCTTAGACTGGGAATGAAC
321 CGATCCTGCT-GTGGTCCTGCTGCCGTAAACCTT-GTTC-ATCCGATCTTAGACT-GGAATGAAC
* *
18894385 TCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGG
382 TCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTTGCGGG
* * * * * *
18894450 CGCTCAACCGGTCGGAGAGGTAGAATGCGTAAGTC-AGAGACCGACCTGGTCCCCTCTGTGTGCT
447 CGCTCAACC-GCCGGAGAGGCAGAATGTGTAAGTCGAG-GATCGACCCGGTCCCCCCTGTGTGCT
* * * * *
18894514 GTCGATCCTACTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCC
510 GTCGAT-CTGCTGCCACAACACTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
18894579 TAAGTCAACCCACGAAACGAGCGTACGGGCACTGAACCGACCGAAGAGGCATAATGCGCAAGCCA
574 TAAGTCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCA
* * * *
18894644 GGGATCAGCCCGATCCCTCTCTGTGTGCTGTCGGTCCCGCTACCACAACCCTCATTCTGGCTGGG
639 GGGATC-GCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGTTC-GGCTGGG
* * *
18894709 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGACGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGAGCTCAG
* * ** * *
18894774 CCAGTCGGAGAGGTAGAATGCGCAAGCCGAAGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATCC
* *
18894839 TGCTACCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
131 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * * * * * * *
18894904 GGATGAAGTCCGTATGCCTAAGTCAACCCATGAAATGAACGTACGGGCACTTAGCCAACCAGAAA
196 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGACCAGAGA
* * * * * * *
18894969 TGCCGGCCAGAGAGGCAGAATGCGCAAGCTGAGGATTGGCCAAC-TTCCCCCCTGTGTGCTACCA
261 GGCCGGACGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCC--CGGTCCCCCCTGCGTGCT-CCG
*
18895033 ATCCTGCTGGTGGTCCTGCTGCTGTAAACCTTGGTTTCATCCGATCTTAGACTGAGAATGAACTC
323 ATCCTGCT-GTGGTCCTGCTGCCGTAAACCTT-G-TTCATCCGATCTTAGACTG-GAATGAACTC
** *
18895098 TGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGCG
384 TGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTTGCGGGCG
* * * * * * *
18895163 CTCAGCCAGCCGGAAAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCCCTGTGTGCTATC
449 CTCAACC-GCCGGAGAGGCAGAATGTGTAAGTCGAGGATCGACCCGGTCCCCCCTGTGTGCTGTC
* * *
18895228 GATACTGCTGCCACAACACTCGGTCCAGTCCGATCTCAGACTGGGAATGAACTCCATATGTCTAA
513 GAT-CTGCTGCCACAACACTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
18895293 GTCAACCCATGAAATGAGCATTCGGGCACTGAGCCGATCGGAGAGGCATAATGCACAAGCCAGGG
577 GTCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGG
* * * *
18895358 ATCGGCTCGATCCCCCTCTACGTGCTGTCGGTCTCGCTGCCATAACCCTCGGTTCGGCTGGG
642 ATC-GCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTC-GTTCGGCTGGG
* * * *
18895420 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCAGCCCACGAAACGGGCGTGCGAGAGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CCAACCCACGAAATGGACGTGCGGGAGCTCA
** * * * *
18895485 GCTGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATTGGCTCGAT-CCCCCTACGTGCTGTCGATC
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATC
* * * * * * * *
18895549 CTACTGCCCCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTG
130 CTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* *
18895614 GGGATGAACTCCGTATG-CT---T------ATGAAACGAGCATGCGGGCACTCAACCGGCCAGAG
195 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGACCAGAG
* * * * * *
18895669 AGGTCGGACGGAGAGGCATAATGCGTAAGCT-AGGGATCAGCCCGGTCCCCCACTACGTGCTGTC
260 AGGCCGGACGGAGAGGCAGAATGCGCAAGCTGA-GGATCGGCCCGGTCCCCC-CTGCGTGCT-CC
** * * *
18895733 GATCCCACTGTCGGTCCTACTGCCAT-AACC-----C--CCGATC--CGACT-G---G------G
322 GATCCTGCTGT-GGTCCTGCTGCCGTAAACCTTGTTCATCCGATCTTAGACTGGAATGAACTCTG
* *
18895778 ---GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-TGTGCGGGCGC
386 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCT-TGCGGGCGC
* **
18895839 TCAACCGACCAGAGAGGCAGAATGTGTAAGTCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCG
450 TCAACCG-CCGGAGAGGCAGAATGTGTAAGTCGAGGATCGACCCGGTCCCCCCTGTGTGCTGTCG
* ** ** * *
18895904 ATCTTGCTACCGTAACACTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
514 ATC-TGCTGCCACAACACTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * **
18895969 TCAACCCATGTAACGAGCGTTCGGGTGCTGAGCCGACCGTAGAGGCATAATGCACAAGCTGGGGA
578 TCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGA
* * * *
18896034 TCGACCCGATCCCCCTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTCGGTCCGGTTGGG
643 TCG-CCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTC-GTTCGGCTGGG
* *
18896095 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGAGCTCAG
* * * *
18896160 CC-GACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACTCGGTCCCCCCTATGTGCTATTGATC
66 CCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATC
* * * * *
18896224 TTGCTATCGCAACCCTCAGTCCGGTCCTATCTTAGACTAGGAATGAACTCCATATGCTTAGACTG
130 CTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * * * * *
18896289 GGGATGAACTCCATCTGCCTAAGTCAACCCATGAAACGAGCATGTGGACGCTCAGCCGACTAGAG
195 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGACCAGAG
18896354 AGGC
260 AGGC
18896358 AGGATGCGTA
Statistics
Matches: 1384, Mismatches: 234, Indels: 88
0.81 0.14 0.05
Matches are distributed among these distances:
673 1 0.00
674 69 0.05
675 384 0.28
676 2 0.00
678 1 0.00
679 1 0.00
684 1 0.00
685 32 0.02
687 1 0.00
689 4 0.00
691 6 0.00
693 1 0.00
699 1 0.00
700 13 0.01
701 83 0.06
707 1 0.00
709 75 0.05
710 16 0.01
711 621 0.45
712 71 0.05
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (701 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGAGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATCC
TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGACCAGAGA
GGCCGGACGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCCTGCGTGCTCCGATC
CTGCTGTGGTCCTGCTGCCGTAAACCTTGTTCATCCGATCTTAGACTGGAATGAACTCTGTATGC
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTTGCGGGCGCTCAACC
GCCGGAGAGGCAGAATGTGTAAGTCGAGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCTGCT
GCCACAACACTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
TGAAACGAGCGTTCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCGCCCGA
TCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGTTCGGCTGGG
Found at i:18895566 original size:158 final size:157
Alignment explanation
Indices: 18895103--18896280 Score: 522
Period size: 158 Copynumber: 7.2 Consensus size: 157
18895093 AACTCTGTAT
*** * *
18895103 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAG
* * * * ** *
18895168 CCAGCCGGAAAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCCCTGTGTGCTATCGATAC
66 CCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGAT-C
*
18895233 TGCTGCCACAACACTCGGTCCAGTCCGA
130 TGCTGCCACAACCCTCGGTCCAGTCCGA
* * * * * * *
18895261 TCTCAGAC-TGGGAATGAACTCCATATGTCTAAGTCAACCCATGAAATGAGCATTCGGGCA-CTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGG-AGCTC
** * * * * *
18895324 AGCCGATCGGAGAGGCATAATGCACAAGCCAGGGATCGGCTCGATCCCCCTCTACGTGCTGTCGG
64 AGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCC-CTACGTGCTGTCGA
* * * * *
18895389 TCTCGCTGCCATAACCCTCGGTTC-GGCTGGG
128 TCT-GCTGCCACAACCCTCGGTCCAGTC-CGA
* * * * * *
18895420 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCAGCCCACGAAACGGGCGTGCGAGAGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAG-CCAACCCATGAAACGAGCATGCGGGAGCTCA
* *
18895485 GCTGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATTGGCTCGAT-CCCCCTACGTGCTGTCGATC
65 GCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGAT-
* * * *
18895549 CTACTGCCCCAACCCTCGGT-CTGATCTGA
129 CTGCTGCCACAACCCTCGGTCCAG-TCCGA
* * * * **
18895578 TCTTAGAC-TGGGAATGAACTCCGTGTGCTTAGACTGGGGATGAACTCCGTATGCTTATGAAACG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTA-A-----G-CCAA--CC-----C--ATGAAACG
* * * **
18895642 AGCATGCGGGCA-CTCAACCGGCCAGAGAGGTCGGACGGAGAGGCATAATGCGTAAGCTAGGGAT
49 AGCATGCGGG-AGCTC-A---GCC-----GG-C---CGGAAAGGCAGAATGCGCAAGCCGGGGAT
* * * * * *
18895706 CAGCCCGGTCCCCCACTACGTGCTGTCGATCCCACTGTCGGTCCTACTGCCATAACCCCCGATCC
100 CGGCTCGATCCCCC-CTACGTGCTGTCGAT----C--T--G-----CTGCCACAACCCTCGGTCC
* * *
18895771 -GACTGGG
151 AGTC-CGA
* * * * ** * *
18895778 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAG
* * * * * * * * * *
18895843 CCGACCAGAGAGGCAGAATGTGTAAGTCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCT
66 CCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATC-
* ** * ** *
18895908 TGCTACCGTAACACTCGGTCTGGTCCAA
130 TGCTGCCACAACCCTCGGTCCAGTCCGA
* * * * * * * *
18895936 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGTAACGAGCGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCA
* * * * * * * * * * *
18896000 GCCGACCGTAGAGGCATAATGCACAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGT
65 GCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCC-CTACGTGCTGTCGAT
** * ** *
18896065 CCCACTGCCACAACCCTCGGTCCGGTTGGG
129 -CTGCTGCCACAACCCTCGGTCCAGTCCGA
* * * * * *
18896095 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAG
* * * * * * * *
18896160 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACTCGGTCCCCCCTATGTGCTATTGATCT
66 CCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATC-
** * * * *
18896225 TGCTATCGCAACCCTCAGTCCGGTCCTA
130 TGCTGCCACAACCCTCGGTCCAGTCCGA
*
18896253 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
18896281 TTAGACTGGG
Statistics
Matches: 760, Mismatches: 194, Indels: 132
0.70 0.18 0.12
Matches are distributed among these distances:
157 6 0.01
158 302 0.40
159 190 0.25
160 59 0.08
163 1 0.00
164 2 0.00
165 1 0.00
166 3 0.00
170 15 0.02
171 35 0.05
173 17 0.02
174 3 0.00
175 1 0.00
177 2 0.00
180 2 0.00
182 2 0.00
183 2 0.00
184 17 0.02
186 30 0.04
187 4 0.01
188 15 0.02
191 3 0.00
193 3 0.00
194 1 0.00
199 2 0.00
200 40 0.05
201 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAG
CCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCT
GCTGCCACAACCCTCGGTCCAGTCCGA
Found at i:18895615 original size:26 final size:26
Alignment explanation
Indices: 18895579--18895634 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18895569 CTGATCTGAT
*
18895579 CTTAGACTGGGAATGAACTCCGTGTG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18895605 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18895631 CTTA
1 CTTA
18895635 TGAAACGAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18896186 original size:159 final size:158
Alignment explanation
Indices: 18895744--18896216 Score: 500
Period size: 159 Copynumber: 3.0 Consensus size: 158
18895734 ATCCCACTGT
* * ** *
18895744 CGGTCCTACTGCCATAACCCCCGATCCGACTGGGGCTTAGACATGGAATAAACTCCGTATGCCTA
1 CGGTCCTACTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * *
18895809 AGCCAACCCACGAAATGAGTGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGTGTAAG-TCGA
66 AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCT-GG
*
18895873 GGATCGACCCGGTCCCCCCTACGTGCTGT
130 GGATCGACCCGGTCCCCCCTACGTGCTGC
* * * * * * * *****
18895902 CGATCTTGCTACCGTAACACTCGGTCTGGTCCAATCTTAGAC-TAGGAATGAACTCCGTATGCCT
1 CGGTCCTACTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCT
* * * * * * * * * *
18895966 AAGTCAACCCATGTAACGAGCGTTCGGGTGCTGAGCCGACCGTAGAGGCATAATGCACAAGCTGG
65 AAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGG
* *
18896031 GGATCGACCCGATCCCCCTCTGCGTGCTGC
130 GGATCGACCCGGTCCCCC-CTACGTGCTGC
* * *
18896061 CGGTCCCACTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCTACTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * *
18896126 AGCCAACCCACGAAATGGGCGTGCGGGGGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGG
66 AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGG
* * *
18896191 GATTGACTCGGTCCCCCCTATGTGCT
131 GATCGACCCGGTCCCCCCTACGTGCT
18896217 ATTGATCTTG
Statistics
Matches: 243, Mismatches: 68, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
157 1 0.00
158 116 0.48
159 125 0.51
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CGGTCCTACTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGG
GATCGACCCGGTCCCCCCTACGTGCTGC
Found at i:18903450 original size:26 final size:26
Alignment explanation
Indices: 18903421--18903473 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18903411 CCGATCCGAT
18903421 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18903447 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18903473 C
1 C
18903474 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18904052 original size:317 final size:317
Alignment explanation
Indices: 18903446--18904127 Score: 796
Period size: 317 Copynumber: 2.2 Consensus size: 317
18903436 AACTCCGTAT
* * *
18903446 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGTGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTGAG
*** * * ** *
18903511 CCGACTGGAAAGGCATAATGCGCAAGTTAGGGATTGGCCCAATCCCCCTCTGCGTGCTGCCGGTT
66 CCGACCAAAAAGGCATAATGCGCAAATGAGGGATCAGCCCAATCCCCCTCTGCGTGCTGCCGGTC
**
18903576 CCACTGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
131 CCACTGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * *
18903641 ACCGACGAAATGAGCGTGCGGGTGCTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCAAGGATCG
196 ACCCACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATACGCAAGCCAAGGATCG
* * * * * *
18903706 ACTCGATCCCCCCTACCTGCTATCGATCCTGCAGCCGCAACCCTCGGTCTGG-TCCGA
261 ACCCGATACCCCCTACCTGCTACCGATCCTGCAGCCACAACCCTCGATCCGGCT-CGA
* * *
18903763 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTACGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTGAG
* * * * *
18903828 CGGGCCAAAAAGGCATAATGCGTAAATCGA-GGATCAGCCCGATCCCCTTCTGCGTGCTGCCGGT
66 CCGACCAAAAAGGCATAATGCGCAAAT-GAGGGATCAGCCCAATCCCCCTCTGCGTGCTGCCGGT
* * * *
18903892 CCCGCTGCCATAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGATCTCCCTATGCCTAAGCC
130 CCCACTGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
** * **
18903957 AACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GACCGAAGATGCAGAATACGCAAGCCGGGGAT
195 AACCCACGAAACGAGCGTGCGGGCGCTCAACCAG-CCGAAGAGGCAGAATACGCAAGCCAAGGAT
* * * * * * * * * *
18904021 TGGCCCGATACCCCCTGCGTGTTGCCGATCCTGCTGCCACAACCTTCGATCCGGCTGGG
259 CGACCCGATACCCCCTACCTGCTACCGATCCTGCAGCCACAACCCTCGATCCGGCTCGA
* * *
18904080 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
18904128 GGCGTGTAGG
Statistics
Matches: 303, Mismatches: 58, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
316 1 0.00
317 299 0.99
318 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTGAG
CCGACCAAAAAGGCATAATGCGCAAATGAGGGATCAGCCCAATCCCCCTCTGCGTGCTGCCGGTC
CCACTGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATACGCAAGCCAAGGATCG
ACCCGATACCCCCTACCTGCTACCGATCCTGCAGCCACAACCCTCGATCCGGCTCGA
Found at i:18904088 original size:158 final size:158
Alignment explanation
Indices: 18903446--18904264 Score: 724
Period size: 158 Copynumber: 5.2 Consensus size: 158
18903436 AACTCCGTAT
* * * * * *
18903446 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * ** * *
18903510 GCCGACTGGAA-AGGCATAATGCGCAAG-TTAGGGATTGGCCCAATCCCCCTCTGCGTGCTGCCG
65 GCCGAC-CGAAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCC-CTGCGTGCTGCC-
* * *
18903573 GTTCC-ACTGCCACAACCCTCAATCCGGCTGGG
126 GATCCTGCTGCCACAACCCTCGATCCGGCTGGG
* * * *
18903605 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * **
18903670 CC-AGTCGGAGAGGCAGAATGCGTAAGCCAAGGATCGACTCGATCCCCCCTACCTGCTATCGATC
66 CCGA-CCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
* * * * * *
18903734 CTGCAGCCGCAACCCTCGGTCTGG-TCCGA
130 CTGCTGCCACAACCCTCGATCCGGCT-GGG
* * * * * *
18903763 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * ** * * *
18903827 GCGGGCCAAAAAGGCATAATGCGTAAATCGAGGATCAGCCCGATCCCCTTCTGCGTGCTGCCGGT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCC-CCTGCGTGCTGCCGAT
* *
18903892 CCCGCTGCCATAACCCTC-AGTCCGGCTGGG
129 CCTGCTGCCACAACCCTCGA-TCCGGCTGGG
* * *
18903922 GCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
18903987 TCGACCGAAGATGCAGAATACGCAAGCCGGGGATTGGCCCGATACCCCCTGCGTGTTGCCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
*
18904052 TGCTGCCACAACCTTCGATCCGGCTGGG
131 TGCTGCCACAACCCTCGATCCGGCTGGG
* * * *
18904080 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTAGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGGTGCTCA
* * **
18904145 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGG-CCGGTCCCCCCTGCGTGCTATCGATC
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
* * * * * * *
18904209 CTACTGCCGCAACCCTTGGTCC-GATCCGA
130 CTGCTGCCACAACCCTCGATCCGGCT-GGG
*
18904238 TCTTAGAC-TGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
18904265 TTAGATTGGA
Statistics
Matches: 519, Mismatches: 126, Indels: 32
0.77 0.19 0.05
Matches are distributed among these distances:
157 26 0.05
158 249 0.48
159 240 0.46
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGATCCGGCTGGG
Found at i:18904648 original size:26 final size:26
Alignment explanation
Indices: 18904619--18904671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18904609 CCAGTCTGAT
*
18904619 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18904645 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18904671 C
1 C
18904672 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18912112 original size:26 final size:26
Alignment explanation
Indices: 18912076--18912128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18912066 CCAGTCCGAT
18912076 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
* *
18912102 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
18912128 C
1 C
18912129 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:18914249 original size:157 final size:159
Alignment explanation
Indices: 18913791--18914241 Score: 383
Period size: 159 Copynumber: 2.9 Consensus size: 159
18913781 CTGCCCCATG
* * * * * * * * * * * * *
18913791 AAACGGGCATGCGGGCGCTTAGTCGGCCGGAGAGGTAGAATGCACAAGTCAAGGCTCGACCCGGT
1 AAACGAGCGTGCGGGCGCTAAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATAGACCCGAT
* * * * ** *
18913856 CCCCCCTGCGTGTTGTCGATCCTACTGTCGCAACCCTCGGTTCGGT-TCAATCTTAGACTGGGAA
66 CCCCCTTGCGTGCTGTCGATCTTGCTACCGCAACCCTCGGTCCGGTCTCAATCTTAGACTGGGAA
* **
18913920 TGAACTCCATATGCATAAGTCAACCCATG
131 TGAACTCCATATGCATAAGCCAACCCACA
* * * * * * *
18913949 AAATGAGCGTGCGGGCGTTAAGCTGGCCGAAGAGGCATAATGCGCAAGCCGAGGATAGGCCCGGT
1 AAACGAGCGTGCGGGCGCTAAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATAGACCCGAT
* * * * ****
18914014 CCCCCTCTGCGTGCTG-CCAGTCTCGCTACCACAACCCTCGGTCC-GACTGGGGCTTAGACAT-G
66 CCCCCT-TGCGTGCTGTCGA-TCTTGCTACCGCAACCCTCGGTCCGGTCTCAATCTTAGAC-TGG
* * *
18914076 GAATTAACTCCCTATGCCTAAGCCAACCCACA
128 GAATGAACTCCATATGCATAAGCCAACCCACA
* * * * * * * *
18914108 AAACGGGCGTGTGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGAT
1 AAACGAGCGTGCGGGCGCTAAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATAGACCCGAT
*
18914173 -CCCCTTGCGTGCTGTCGATCTTGCTACCGCAACCCTCAGTCCGGTCT-AATCTTAGACTGGGAA
66 CCCCCTTGCGTGCTGTCGATCTTGCTACCGCAACCCTCGGTCCGGTCTCAATCTTAGACTGGGAA
18914236 TGAACT
131 TGAACT
18914242 TCGTATGCTT
Statistics
Matches: 225, Mismatches: 61, Indels: 15
0.75 0.20 0.05
Matches are distributed among these distances:
156 1 0.00
157 46 0.20
158 67 0.30
159 110 0.49
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
AAACGAGCGTGCGGGCGCTAAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATAGACCCGAT
CCCCCTTGCGTGCTGTCGATCTTGCTACCGCAACCCTCGGTCCGGTCTCAATCTTAGACTGGGAA
TGAACTCCATATGCATAAGCCAACCCACA
Found at i:18914259 original size:26 final size:26
Alignment explanation
Indices: 18914223--18914278 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18914213 CCGGTCTAAT
* *
18914223 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATA
*
18914249 CTTAGACTGGGGATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
18914275 CTTA
1 CTTA
18914279 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:18915297 original size:159 final size:157
Alignment explanation
Indices: 18914934--18915332 Score: 383
Period size: 158 Copynumber: 2.5 Consensus size: 157
18914924 AACTCCATAT
* * * ** *
18914934 GCTTAGACATGGAATGAACTTCGTATGCCTAACCCAACCCATGAAACGAGTGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAAC-TCTTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * * * * *
18914999 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGTTGTCGATCT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGCCGATCT
* * *
18915064 CGCTACCGCAACCCTCGGTCCAGTCTAA
130 CGCTACCACAACCCTCAGTCCAGGCTAA
* * * * *
18915092 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCT-TATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * *
18915156 GCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCTCTACATGCTGCCGGT
64 ACCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTACATGCTGCCGAT
* * *
18915221 GC-CGCTGCCACAACCCTCAGT-CTGGCTAGG
128 -CTCGCTACCACAACCCTCAGTCCAGGCTA-A
* * *
18915251 GCTTAGACATGGAATGAACTCCTTATGCTTAAGCCAACCCATGAAACG-GACGTGCGGGGGCTCA
1 GCTTAGACATGGAATGAACT-CTTATGCCTAAGCCAACCCATGAAACGAG-CGTACGGGCGCTCA
* *
18915315 ACCGACTGGAGAGGCAGA
64 ACCGGCCGGAGAGGCAGA
18915333 TCCCCCCTAC
Statistics
Matches: 191, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 95 0.50
159 89 0.47
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAAC
CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGCCGATCTC
GCTACCACAACCCTCAGTCCAGGCTAA
Found at i:18915421 original size:26 final size:26
Alignment explanation
Indices: 18915385--18915437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18915375 TCAGTCTGAC
*
18915385 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18915411 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18915437 C
1 C
18915438 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18916078 original size:26 final size:26
Alignment explanation
Indices: 18916049--18916101 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18916039 CTGGTCTGAT
*
18916049 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
18916075 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18916101 C
1 C
18916102 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18916445 original size:26 final size:26
Alignment explanation
Indices: 18916404--18916456 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18916394 CTGGTCCGAT
18916404 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
18916430 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18916456 C
1 C
18916457 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18916792 original size:26 final size:26
Alignment explanation
Indices: 18916761--18916810 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18916751 CCGGTCTAAT
18916761 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
18916787 CTTAGACTTGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18916811 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:18917088 original size:159 final size:157
Alignment explanation
Indices: 18916787--18917289 Score: 521
Period size: 159 Copynumber: 3.2 Consensus size: 157
18916777 ACTCCGTACG
* * *
18916787 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAA-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCGTTCAAC
* * * * * * * * *
18916851 TCGGCCGGAGAGGTAAAATGCACAAGTCGGGGACCGACTCGATCCCCCCTTGCATGCGGTCGATC
66 T-AGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCC-TGCGTGCTGTCGATC
18916916 CTGCTACCGCAACCCTCGGTCCGATTCGAT
129 CTGCTACCGCAACCCTCGGTCCGA-TCGAT
* *
18916946 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGTGGGCGTTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCGTTCAAC
* * * * * *
18917011 TAGCCGGAGAGGGATAATGCGTAAACCGGGGATCGGCTCGGTCCTCCTCTGCGTGCTGTCGGTCC
66 TAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCC-CCCCTGCGTGCTGTCGATCC
* * * **
18917076 CGCTGA-CACAACCCTCGGTCCGAATAGGG
130 TGCT-ACCGCAACCCTCGGTCCG-ATCGAT
* * **
18917105 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGGAATA-G-GCATGTGGGCACTC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAA-ACGAGCATGTGGGCGTTC
* * * * * * * *
18917167 AGCCAGTCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCTCGGTCCCCCCTGGGCGCTGTCGAT
63 AACTAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGAT
* *
18917232 CCTACTACCGCAACCCTCGGTCCGATCTAAT
128 CCTGCTACCGCAACCCTCGGTCCGATC-GAT
*
18917263 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18917290 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 52, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 56 0.20
159 210 0.74
160 11 0.04
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCGTTCAAC
TAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCGATCGAT
Found at i:18917299 original size:26 final size:26
Alignment explanation
Indices: 18917263--18917315 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18917253 CCGATCTAAT
*
18917263 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18917289 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18917315 C
1 C
18917316 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18918024 original size:26 final size:26
Alignment explanation
Indices: 18917986--18918038 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18917976 GGCTCAAAAT
* *
18917986 CTTAGACTGGGAATGTACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18918012 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18918038 C
1 C
18918039 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18918355 original size:159 final size:158
Alignment explanation
Indices: 18918011--18918457 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 158
18918001 TACTCTGTAT
*
18918011 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * ** * *
18918076 CCGGTCGGAGCGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCAATCC
66 CCGGCCGAAAAGGCAGAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCAATCC
* * **
18918141 TGCTGTCGTAACCCTCAGTCCGATCTGA
131 CGCTGCCACAACCCTCAGTCCGATCTGA
* * * * * *
18918169 TCTTAGAC-TGGGAATGAACTCCGTATGCATAGGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * ** * * *
18918233 GCCGGCCGAAAAGGCATAACGCGCAAGCTGGGGATCGGCCTGATCCCGTTCTTCGTGCTG-CAGG
65 ACCGGCCGAAAAGGCAGAACGCGCAAGCCGGGGATCGACCCGATCCC-CCCTGCATGCTGTCA-A
* *
18918297 TCCCGCTGCCACAACCCTCAGTCTGA-CTGGG
128 TCCCGCTGCCACAACCCTCAGTCCGATCT-GA
* * * * *
18918328 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTACGGGAGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCAGGCGCTCA
* * * * * * * * *
18918392 ACCGGTCGGAGAGGTAGAAAGCGCAAGTCGGGGACCGGCCCGATCCCCCCTGCATGCTGTCGATC
65 ACCGGCCGAAAAGGCAGAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCAATC
18918457 C
130 C
18918458 TACTGTCGCA
Statistics
Matches: 227, Mismatches: 55, Indels: 14
0.77 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 107 0.47
159 118 0.52
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
CCGGCCGAAAAGGCAGAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCAATCC
CGCTGCCACAACCCTCAGTCCGATCTGA
Found at i:18918521 original size:25 final size:26
Alignment explanation
Indices: 18918487--18918538 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
18918477 CCGGCCCGAT
18918487 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18918512 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18918538 C
1 C
18918539 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18919529 original size:26 final size:26
Alignment explanation
Indices: 18919500--18919555 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
18919490 CCGGTCTGAT
*
18919500 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTAAG
18919526 CTTAGACATGGAATGAACTCCGTAAG
1 CTTAGACATGGAATGAACTCCGTAAG
18919552 CTTA
1 CTTA
18919556 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTAAG
Found at i:18919655 original size:184 final size:183
Alignment explanation
Indices: 18919342--18919710 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 183
18919332 CCGGCTGGGA
* * *
18919342 CTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCATTCAGC
1 CTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCATGAAACGAGCGTACAGGCA-TCAGC
* * ** * *
18919407 CGACCGGAGAGGCAGAATGTGCAAGCTAGGGATCGGCCTGGTCCCCCCTGCATGCTGCCGATCCT
65 CGACCAGAGAGGCAGAATGTGCAAGCTAGGGACCGGCCCAGTCCCCCCTACATGCTACCGATCCT
* * *
18919472 G-TGACCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GAGAATGAACTCCGTATG
130 GCTG-CCACAACCCTCGGTCCGATCCGATCTTAGACTAG-GAATGAACTCCGTATG
* * *
18919526 CTTAGACATGGAATGAACTCCGTAAGCTTAAGCCAACCCATGAAACGAGTGTACGAGCGC-TCAG
1 CTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCATGAAACGAGCGTAC-AG-GCATCAG
* * * * ** *
18919590 TCGGCCAGAGAGGTAGAATGTGCAAGCTAGGGACCGGCCCAGTCCCCTCTATGTGCTATCGATCC
64 CCGACCAGAGAGGCAGAATGTGCAAGCTAGGGACCGGCCCAGTCCCCCCTACATGCTACCGATCC
*
18919655 TGCTGCCACAACCCTTGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATG
129 TGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATG
18919710 C
1 C
18919711 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
184 151 0.96
185 5 0.03
186 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (183 bp):
CTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCATGAAACGAGCGTACAGGCATCAGCC
GACCAGAGAGGCAGAATGTGCAAGCTAGGGACCGGCCCAGTCCCCCCTACATGCTACCGATCCTG
CTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:18920029 original size:26 final size:26
Alignment explanation
Indices: 18920000--18920052 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18919990 CCAGTCCAAT
18920000 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18920026 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18920052 C
1 C
18920053 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18920754 original size:26 final size:25
Alignment explanation
Indices: 18920715--18920766 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
18920705 GCCTCAAACT
18920715 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
18920740 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
18920766 C
1 C
18920767 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:18921967 original size:26 final size:26
Alignment explanation
Indices: 18921929--18921978 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
18921919 CCGATCTGAT
* *
18921929 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18921955 CTTAGACAT-GGAATAAACTCCGTA
1 CTTAGAC-TGGGAATAAACTCCGTA
18921979 GGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18923642 original size:156 final size:154
Alignment explanation
Indices: 18923372--18923918 Score: 469
Period size: 157 Copynumber: 3.5 Consensus size: 154
18923362 AGTCGACCAA
* * * ** * *
18923372 AGAGGCATAATTCGCAAGCC-GAGGATTAGCCCGAT-CCCCCTGTACGTGCTACCGGTCTTGCTA
1 AGAGGCAGAATGCGCAAGCCAG-GGATCAG-CCGATCCCCCCTG--CGTGCTGTCGATCCTGCTA
* ** ** * * * *
18923435 CCACAACCCTCAGTTTGGCTGGGGCTTAGACATTGAATGAACTCACTATGCCAAAGCCAACCCAC
62 CCGCAACCCTTGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
*
18923500 GAACGAGCATGCGGGCGCTCAGTCGATCGG
127 GAACGAGCGTGCGGGCGCTCAG-CGA-CGG
*
18923530 AGAGGCAGAATGCGCAAGCCAGGGATCAGCCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGC
1 AGAGGCAGAATGCGCAAGCCAGGGATCAGCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGC
* * * * *
18923595 AACCCTTGGTCCGGTCT-GATCTTTGAC-TAGGAATGAAGTCCGTATGCCTAAGTCAACCCACGA
66 AACCCTTGGTCCGG-CTGGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACG-
* * * * *
18923658 AATGAGTGTGCGGGCACTGAGCCGACTG
128 AACGAGCGTGCGGGCGCTCAG-CGACGG
* * * * * * *
18923686 -GAGGCATAATGCACAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCCATCCCGCTGCC
1 AGAGGCAGAATGCGCAAGCCAGGGATCAGCC-GATCCCCC-CTGCGTGCTGTCGATCCTGCTACC
* * * *
18923750 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
64 GCAACCCTTGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC-G
* *
18923815 AACG-GCGTGCTGGTGCTCAGCGACCGG
128 AACGAGCGTGCGGGCGCTCAGCGA-CGG
* * * * * * *
18923842 AGAGGTAGAATGCGTAAGCCAGGGAAT-GGCCTAGTCCCCCTTCCGTGCTATCGATCCTGCTACC
1 AGAGGCAGAATGCGCAAGCCAGGG-ATCAGCCGA-TCCCCCCTGCGTGCTGTCGATCCTGCTACC
18923906 GCAACCCTTGGTC
64 GCAACCCTTGGTC
18923919 TGATCCAATC
Statistics
Matches: 308, Mismatches: 67, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
155 31 0.10
156 116 0.38
157 126 0.41
158 34 0.11
159 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (154 bp):
AGAGGCAGAATGCGCAAGCCAGGGATCAGCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGC
AACCCTTGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAC
GAGCGTGCGGGCGCTCAGCGACGG
Found at i:18923879 original size:157 final size:157
Alignment explanation
Indices: 18923430--18923918 Score: 492
Period size: 157 Copynumber: 3.1 Consensus size: 157
18923420 CTACCGGTCT
* ** * * *
18923430 TGCTACCACAACCCTCAGTTTGGCTGGGGCTTAGACATTGAATGAACTCACTATGCCAAAGCCAA
1 TGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
18923495 CCCACGAACGAGCATGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGC
66 CCCACAAACGAGCGTGCGGGCGCTCAGCCGA-CGGAGAGGCAGAATGCGCAAGCCAGGGATCAGC
* *
18923560 CGA-TCCCCC-CTGCGTGCTGTCGATCT
130 CTAGTCCCCCTCTGCGTGCTGTCGATCC
* * ** * * * *
18923586 TGCTACCGCAACCCTTGGTCCGGTCT-GATCTTTGAC-TAGGAATGAAGTCCGTATGCCTAAGTC
1 TGCTACCACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCC
* * * * * * * *
18923649 AACCCACGAAATGAGTGTGCGGGCACTGAGCCGACTG-GAGGCATAATGCACAAGCCGGGGATCA
64 AACCCAC-AAACGAGCGTGCGGGCGCTCAGCCGACGGAGAGGCAGAATGCGCAAGCCAGGGATCA
* *
18923713 GCCTGGTCCCCCTCTGCGTGCTGTCCATCC
128 GCCTAGTCCCCCTCTGCGTGCTGTCGATCC
* *
18923743 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 TGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
18923808 CCCACAAAACG-GCGTGCTGGTGCTCAG-CGACCGGAGAGGTAGAATGCGTAAGCCAGGGAAT-G
66 CCCAC-AAACGAGCGTGCGGGCGCTCAGCCGA-CGGAGAGGCAGAATGCGCAAGCCAGGG-ATCA
* *
18923870 GCCTAGTCCCCCT-TCCGTGCTATCGATCC
128 GCCTAGTCCCCCTCTGCGTGCTGTCGATCC
* *
18923899 TGCTACCGCAACCCTTGGTC
1 TGCTACCACAACCCTCGGTC
18923919 TGATCCAATC
Statistics
Matches: 262, Mismatches: 61, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
155 31 0.12
156 103 0.39
157 125 0.48
158 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
TGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAACGAGCGTGCGGGCGCTCAGCCGACGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCC
TAGTCCCCCTCTGCGTGCTGTCGATCC
Found at i:18923957 original size:26 final size:26
Alignment explanation
Indices: 18923928--18923980 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18923918 CTGATCCAAT
18923928 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
18923954 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18923980 C
1 C
18923981 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18924662 original size:26 final size:26
Alignment explanation
Indices: 18924633--18924685 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18924623 TCGGTCCGAT
18924633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
18924659 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18924685 C
1 C
18924686 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18925495 original size:26 final size:26
Alignment explanation
Indices: 18925466--18925518 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18925456 CCGATCCAAT
18925466 CTTAGACTCAGAATGAACTCCGTATG
1 CTTAGACTCAGAATGAACTCCGTATG
** *
18925492 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCAGAATGAACTCCGTATG
18925518 C
1 C
18925519 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTCAGAATGAACTCCGTATG
Found at i:18935295 original size:26 final size:26
Alignment explanation
Indices: 18935244--18935296 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18935234 CCGGTCCGAT
* **
18935244 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
18935270 CTTAGACAT-GGAATAAACTCCATATG
1 CTTAGAC-TGGGAATAAACTCCATATG
18935296 C
1 C
18935297 CTAAGCGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18936142 original size:26 final size:26
Alignment explanation
Indices: 18936113--18936165 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18936103 CCGGTCTGAT
18936113 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18936139 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18936165 C
1 C
18936166 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18936397 original size:869 final size:877
Alignment explanation
Indices: 18934705--18936719 Score: 2444
Period size: 869 Copynumber: 2.3 Consensus size: 877
18934695 AACTCCATAT
* * *
18934705 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
* * * * * *
18934770 CCTGTCGGAGAGGCAGAATAAGCAAGCCGAGGATCTGCTCGGTCCTCCCTGCATGCTGCCGATCC
66 CCAGTCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
* * * * * * *
18934835 TGTTGCCACAACCCTCGGTCCA-ATCCGATCTTAAATTGGGAATGAACTTCATATGCTTAGACTA
131 TGCTGCCGCAACCCTCGATCCAGA-CCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
18934899 TGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGTTGAGCCGACCAGAG
195 GGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* ** * * **
18934964 AGGCCGGCCGGAGAGGCATAATGTGCAAGCTGGGGATCAGCTTGATCCCCTTCTGCGTGCTACCG
260 AGGCAGAACGGAGAGCCATAATGTGCAAGCCGGGGATCAGCCCGAT-CCC-TCTGCGTGCTACCG
* * *
18935029 ATCTCACTACCGGTCCTGCTACCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTC
323 A--TCACTACCGATCCTGCTACCACAACCCTCAATCCGACTGGGGCTTAGACATAGAATGAACTC
* * * * * * * *
18935094 CGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGCGCTCAGTCGGCCGGAGAGGTAGAATGCG
386 CATATGACTAAGCCAACCCATGAAATGAGCGTACGGCACTCAGCCGACCGGAGAGGCAGAATACG
**
18935159 AAAGCTAGGGATCGGTTCGGTCCCCCCCTGCGTGCTGCCAATCCTGTTACCGGTCCTGCTACCGC
451 AAAGCTAGGGATCGACTCGGTCCCCCCCTGCGTGCTGCCAATCCTGTTACCGGTCCTGCTACCGC
* *
18935224 AACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATAAACT
516 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACT
* * * * **
18935289 CCATATGCCTAAGCGAACCCAAGAAACAAGCGTGCGGGTGCTCAGCCTACTGGAGAGGCAGAATG
581 CCATATGCCTAAGCCAACCCAAGAAACAAGCGTGCGGATGCTCAACCGACCAGAGAGGCAGAATG
* ** * *
18935354 CACAAGTCCGGGACTGGCCCGGTGGCCCCTGCATGCTATCGATCCTACTACCGTAACCCTCGGTC
646 CACAAGTCCGGGACCGGCCCGGTCCCCCCTGCATGCTATCGATCCTACTACCGCAACCCTCGATC
* * * * **
18935419 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCTTAAGTCAACCCATGAAACGAGCGTTTGG
711 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
* * * * * * * * *
18935484 GTGCTGAGTCAGTCGGAGAGGGATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGC
776 GTGCTAAGCCAGCCGAAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGC
* * *
18935549 TGCCAGT-CTCGCTGCCACAACCAT-TGATCCGACTGGG
841 TGCCAGTCCT-GCTACCACAACCCTCAG-TCCGACTGGG
* *
18935586 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
* * * * * *
18935651 CCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGGTCGGTCCCCCCTGTGTGCTACCAATCT
66 CCAGTCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
* * * *
18935716 TGCTACTGCAACCCTCGATCCAGACCGATCTTAGATTGAGAATAAACTCCGTATGCTTAGACTGG
131 TGCTGCCGCAACCCTCGATCCAGACCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
18935781 GGATGAACTCCGTATGTCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGA
196 GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGA
*
18935846 GGCAGAATGGAGAGCCATAATGCT-CAAGCCGGGGATCAGCCCGAT-CC-CT-C-T-CTA-CG-T
261 GGCAGAACGGAGAGCCATAATG-TGCAAGCCGGGGATCAGCCCGATCCCTCTGCGTGCTACCGAT
* * * * *
18935903 -GCTACCGATCCTGCTACCACAACCCTCGATCCGATTGGGGCTTAGACATAGAATGAGCTCTATA
325 CACTACCGATCCTGCTACCACAACCCTCAATCCGACTGGGGCTTAGACATAGAATGAACTCCATA
* * *
18935967 TGACTAAGCCACCCCATGAAATGAGTGTACGGGCACTCAGCCGATCGGAGAGGCAGAATACGCAA
390 TGACTAAGCCAACCCATGAAATGAGCGTAC-GGCACTCAGCCGACCGGAGAGGCAGAATACG-AA
* * *** * * * *
18936032 ATC-GGGGATCGACTCGGT-CCCCCCTGCGTGCTGTTGATCCTGTTGCTGTTCCTGCTATCGCAA
453 AGCTAGGGATCGACTCGGTCCCCCCCTGCGTGCTGCCAATCCTGTTACCGGTCCTGCTACCGCAA
* * *
18936095 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCATGGAATGAACTCC
518 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCC
* * * * * **
18936160 GTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGATGCTTAACCGACCAGAGAGGCAGAATGTG
583 ATATGCCTAAGCCAACCCAAGAAACAAGCGTGCGGATGCTCAACCGACCAGAGAGGCAGAATGCA
* ** * * * * *
18936225 CTAG-CCGGGGACCGGCTTGGTCCCCCCTGCATGTTGTCGATCTTACTGCCGCAACCCTCGATTC
648 CAAGTCC-GGGACCGGCCCGGTCCCCCCTGCATGCTATCGATCCTACTACCGCAACCCTCGATCC
18936289 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
712 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
*
18936354 TGCTAAGCC-GACCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGC
777 TGCTAAGCCAG-CCGAAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGC
* *
18936418 TGCCAGTCCTGCTACCACAACCCTCAGTCTGGCTGGG
841 TGCCAGTCCTGCTACCACAACCCTCAGTCCGACTGGG
* *
18936455 GCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAACGGGCTTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
* * * * * * * *
18936520 CCAGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTGCTGATCC
66 CCAGTCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
* ** ** * *
18936585 TGCTGCCGTAACCCTC-AGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTG
131 TGCTGCCGCAACCCTCGA-TCCAGACCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
18936649 GGGATGAACTGCATATGCCTAAGTCAACCCATGAAACGAACGTGCGGACGCTCAGTCGACCAGAG
195 GGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
18936714 AGGCAG
260 AGGCAG
18936720 GATGCGCAAG
Statistics
Matches: 958, Mismatches: 167, Indels: 30
0.83 0.14 0.03
Matches are distributed among these distances:
868 4 0.00
869 642 0.67
870 41 0.04
871 4 0.00
873 2 0.00
874 3 0.00
875 1 0.00
876 1 0.00
877 2 0.00
879 2 0.00
881 254 0.27
882 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (877 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
CCAGTCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGATCCAGACCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGA
GGCAGAACGGAGAGCCATAATGTGCAAGCCGGGGATCAGCCCGATCCCTCTGCGTGCTACCGATC
ACTACCGATCCTGCTACCACAACCCTCAATCCGACTGGGGCTTAGACATAGAATGAACTCCATAT
GACTAAGCCAACCCATGAAATGAGCGTACGGCACTCAGCCGACCGGAGAGGCAGAATACGAAAGC
TAGGGATCGACTCGGTCCCCCCCTGCGTGCTGCCAATCCTGTTACCGGTCCTGCTACCGCAACCC
TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCATA
TGCCTAAGCCAACCCAAGAAACAAGCGTGCGGATGCTCAACCGACCAGAGAGGCAGAATGCACAA
GTCCGGGACCGGCCCGGTCCCCCCTGCATGCTATCGATCCTACTACCGCAACCCTCGATCCGATC
CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCT
AAGCCAGCCGAAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGCCA
GTCCTGCTACCACAACCCTCAGTCCGACTGGG
Found at i:18936495 original size:159 final size:158
Alignment explanation
Indices: 18936138--18936640 Score: 493
Period size: 158 Copynumber: 3.2 Consensus size: 158
18936128 AACTCCGTAT
* * *
18936138 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGATGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGC-TAA
* * * ** *
18936203 -CCGACC-AGAGAGGCAGAATGTGCTAGCCGGGGACCGGCTTGGTCCCCCCTGCATGTTGTCGAT
65 GCCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTG-CGAT
* * *
18936266 CTTACTGCCGCAACCCTC-GAT-TCGATCCGA
128 CCTGCTGCCGCAACCCTCAG-TCTGGATCCGA
* *
18936296 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAA
* * * *
18936360 GCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCAGT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCATGCTGCGA-T
* * * * *
18936425 CCTGCTACCACAACCCTCAGTCTGGCT-GGG
128 CCTGCTGCCGCAACCCTCAGTCTGGATCCGA
* * * * * ** *
18936455 GCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAACGGGCTTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAG
* * * * * *
18936520 CC-AGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTGCTGATC
66 CCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGC-GATC
* *
18936584 CTGCTGCCGTAACCCTCAGTCTGG-TTCGA
129 CTGCTGCCGCAACCCTCAGTCTGGATCCGA
*
18936613 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18936641 TTGGACTGGG
Statistics
Matches: 282, Mismatches: 51, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
157 6 0.02
158 151 0.54
159 120 0.43
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCGATCCT
GCTGCCGCAACCCTCAGTCTGGATCCGA
Found at i:18937376 original size:26 final size:26
Alignment explanation
Indices: 18937338--18937388 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18937328 GGCTCAAACT
*
18937338 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18937364 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
18937389 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18937717 original size:26 final size:26
Alignment explanation
Indices: 18937681--18937733 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18937671 CTGGTTCAAT
*
18937681 CTTAGACTGGGGATGAGCTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
*
18937707 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
18937733 C
1 C
18937734 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:18938423 original size:26 final size:26
Alignment explanation
Indices: 18938379--18938429 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18938369 GATCCAATCA
*
18938379 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
18938405 TAGACTGGGGAT-AACCTCCATATGC
1 TAGACTGGGAATGAA-CTCCATATGC
18938430 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:18939103 original size:514 final size:512
Alignment explanation
Indices: 18938054--18939115 Score: 1068
Period size: 514 Copynumber: 2.1 Consensus size: 512
18938044 CCTCGGTCCG
* * * * *
18938054 GTCCTATCTTAGACTGGGAATGAACTCCGTATGCTAAGTCAACCCACGAAACAAGCGTTCGGGCG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACAAGCGTGCGAGCA
* * * * *
18938119 CTGAGCCAACCGAAGAGGCATAATGCGCAAGCTGGGGATCGACTCGGTCCCCCTCTACGTGCTGC
66 CTCAGCCAACCGAAGAGGCATAACGCACAAGCTGGGCATCGACTCGATCCCCCTCTACGTGCTGC
*
18938184 CAATCCCGCTGCCACAACCCTCAGTTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
131 CAATCCCGCTGCCACAACCCTCAGGTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
** * * *
18938249 AGCCAACCCACGAAACGGGCGTACAGGCACTCAGCCAGCCGGAGAGGTAGAATACGTAAGCCGGG
196 AGCCAACCCACGAAACAAGCGTACAGGCACTCAGCCAGCCAGAGAGGCAGAATACGCAAGCCGGG
* * *
18938314 GATCGGTCCGGTCCCCCCTGTATGCTATCGATCCTGCTACCGCAACCTTCGATCCGATCCAATCA
261 GATCGGTCCGGTCCCCCCTCTATGCTACCGATCCTGCTACCGCAACCCTCGATCCGATCCAATCA
* *
18938379 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAACCTCCATATGCCTAAGTCAACCCAT
326 TAGACTGGGAATGAACTCCGAATGCTTAGACTGGGGATAACCTCCATATGCCTAAGTCAACCCAC
* * * *
18938444 GAAACGAGCGTTCGGGCACTCAACTGGTCAGAGAGGCATAACGCACAAGCCAGGGATCAGCCCGA
391 GAAACGAGCGTACGGGCACTCAACTGGCCAAAGAGGCAGAACGCACAAGCCAGGGATCAGCCCGA
* * * * * ** *
18938509 TCCCCCTCTGTGGGCTGTCGACCCCGCTGCCGGTCCTGTTGCCACAACTGTCGGTCT
456 TCCCCCTCTGTGGGCTATCGACCCCACTGCCGGTCCTGCTACCACAACTCTCAATCC
* * * * ** * * *
18938566 GGCTGAGGCCTAGACAAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAG
1 GTCCGA-TCTTAGACTGGGAATGAACTCCGTATG-CTAAGCCAACCCACGAAACAAGCGTGCGAG
* * * * * * * *
18938631 CACTCTGTCGATCGGAGATGCATAACGCACAAG-TCGGGCATC-AGTCCGATCCCCCTTTACGTG
64 CACTCAGCCAACCGAAGAGGCATAACGCACAAGCT-GGGCATCGACT-CGATCCCCCTCTACGTG
* * * * *
18938694 CTGTCGATCCTGCTGCCATAACCCTC-GGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
127 CTGCCAATCCCGCTGCCACAACCCTCAGGTCCG-CTGGGGCTTAGACATGGAATGAACTCCCTAT
* * ** * ** *
18938758 GCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTTATTCGGCCAGAGAGGCAGAATGA-GCAA
191 GCCTAAGCCAACCCACGAAACAAGCGTACAGGCACTCAGCCAGCCAGAGAGGCAGAAT-ACGCAA
* * * * ** *
18938822 GTCGGGGATCGG-CTTGGT-CCCCCTCTACGTGCTGCCGATCTTGCTGTCGCAACCCTC-AGTCT
255 GCCGGGGATCGGTC-CGGTCCCCCCTCTA--TGCTACCGATCCTGCTACCGCAACCCTCGA-TCC
* * * * *
18938884 GGTTCGATCTTAGATTGGGAATGAACTCCGAATGCTTAGACTGGGGATGAA-CTCCATATGCCTA
316 GATCCAATCATAGACTGGGAATGAACTCCGAATGCTTAGACTGGGGAT-AACCTCCATATGCCTA
* * * ** * *
18938948 AGTCAACCCACGAAACGAGTGTACGGGCACTC-AGTCGGCCAAAGAGGCAGAATGCGGAAGTCGG
380 AGTCAACCCACGAAACGAGCGTACGGGCACTCAACT-GGCCAAAGAGGCAGAACGCACAAGCCAG
* ** * * * ** * *
18939012 GGATTAGCTTGAT-CCCTTCTG-GGTGCTATCGATCCTACTGTTGGTCCTGCTATCGCAAGC-CT
444 GGATCAGCCCGATCCCCCTCTGTGG-GCTATCGACCCCACTGCCGGTCCTGCTACCACAA-CTCT
18939074 CAATCC
507 CAATCC
*
18939080 GATCCGATCTTAGACTGGGAATGAACTCCATATGCT
1 G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCT
18939116 TAGACATAGA
Statistics
Matches: 435, Mismatches: 100, Indels: 29
0.77 0.18 0.05
Matches are distributed among these distances:
512 3 0.01
513 43 0.10
514 244 0.56
515 143 0.33
516 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (512 bp):
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACAAGCGTGCGAGCA
CTCAGCCAACCGAAGAGGCATAACGCACAAGCTGGGCATCGACTCGATCCCCCTCTACGTGCTGC
CAATCCCGCTGCCACAACCCTCAGGTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACAAGCGTACAGGCACTCAGCCAGCCAGAGAGGCAGAATACGCAAGCCGGG
GATCGGTCCGGTCCCCCCTCTATGCTACCGATCCTGCTACCGCAACCCTCGATCCGATCCAATCA
TAGACTGGGAATGAACTCCGAATGCTTAGACTGGGGATAACCTCCATATGCCTAAGTCAACCCAC
GAAACGAGCGTACGGGCACTCAACTGGCCAAAGAGGCAGAACGCACAAGCCAGGGATCAGCCCGA
TCCCCCTCTGTGGGCTATCGACCCCACTGCCGGTCCTGCTACCACAACTCTCAATCC
Found at i:18939242 original size:196 final size:196
Alignment explanation
Indices: 18938888--18939243 Score: 421
Period size: 196 Copynumber: 1.8 Consensus size: 196
18938878 CAGTCTGGTT
* * * *
18938888 CGATCTTAGATTGGGAATGAACTCCGAATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGAATGCTTAGACTGAGAATGAACTCCATATGCCTAAGCCA
** ** * * * * **
18938953 ACCCACGAAACGAGTGTACGGGCACTCAGTCGGCCAAAGAGGCAGAATGCGGAAGTCGGGGATTA
66 ACCCACGAAACGAGCATACGGGCACTCAACCGACCAAAGAGGCAAAATGCGCAAGTCGAGGACGA
** **
18939018 GCTTGATCCCTTCTGGGTGCTATCGATCCTACTGTTGGTCCTGCTATCGCAAGCCTCAATCCGAT
131 GCCCGATCCCCCCTGGGTGCTATCGATCCTACTGTTGGTCCTGCTATCGCAAGCCTCAATCCGAT
18939083 C
196 C
*
18939084 CGATCTTAGACTGGGAATGAACTCC-ATATGCTTAGACAT-AGAATGAACTCCGTATGCCTAAGC
1 CGATCTTAGACTGGGAATGAACTCCGA-ATGCTTAGAC-TGAGAATGAACTCCATATGCCTAAGC
* * * * **
18939147 CAACCCATGAAATGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCGCAAGTCGAGGAC
64 CAACCCACGAAACGAGCATACGGGCACTCAACCGACCAAAGAGGCAAAATGCGCAAGTCGAGGA-
* *
18939212 CGA-CCCGATCCCCCCTGTGTGCTGTCGATCCT
128 CGAGCCCGATCCCCCCTGGGTGCTATCGATCCT
18939244 GCTACCGCAA
Statistics
Matches: 130, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
195 1 0.01
196 127 0.98
197 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (196 bp):
CGATCTTAGACTGGGAATGAACTCCGAATGCTTAGACTGAGAATGAACTCCATATGCCTAAGCCA
ACCCACGAAACGAGCATACGGGCACTCAACCGACCAAAGAGGCAAAATGCGCAAGTCGAGGACGA
GCCCGATCCCCCCTGGGTGCTATCGATCCTACTGTTGGTCCTGCTATCGCAAGCCTCAATCCGAT
C
Found at i:18939488 original size:159 final size:158
Alignment explanation
Indices: 18939113--18939522 Score: 468
Period size: 158 Copynumber: 2.6 Consensus size: 158
18939103 AACTCCATAT
* * *
18939113 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * **
18939178 CCGACCGGAGAGGCAAAATGCGCAAGTCGAGGACCGACCCGATCCCCCCTGTGTGCTGTCGATCC
66 CCGACCGGAGAGGCAAAATACGCAAGCCGAGGACCGACCCGATCCCCCCTGTGTGCTAACGATCC
* * * *
18939243 TGCTACCGCAACCCACTGTCTAGTCTGA
131 CGCTACCACAACCCACTGTCTAGGCGGA
* * * * * *
18939271 TCTTAGAC-TGGGAATGAACTCCGTATGCTTAAGTCAACCCATGTAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* *
18939335 GCCGACCGAAGAGGCATAATACGCAAGCCGAGGACCGACCCGATCCCCCTCTGTGTGCTAACGAT
65 GCCGACCGGAGAGGCAAAATACGCAAGCCGAGGACCGACCCGATCCCCC-CTGTGTGCTAACGAT
* * * * *
18939400 CCCGCTGCCACAGCCC-TTGGT-TCGGCAGGG
129 CCCGCTACCACAACCCACT-GTCTAGGC-GGA
* * * * *
18939430 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* *
18939495 CC-AGCTGGAGAGGCAGAATACGCAAGCC
66 CCGA-CCGGAGAGGCAAAATACGCAAGCC
18939523 AAGAATCAGC
Statistics
Matches: 208, Mismatches: 38, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 103 0.50
159 103 0.50
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATACGCAAGCCGAGGACCGACCCGATCCCCCCTGTGTGCTAACGATCC
CGCTACCACAACCCACTGTCTAGGCGGA
Found at i:18939617 original size:26 final size:26
Alignment explanation
Indices: 18939588--18939638 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18939578 CCGATCTGAT
18939588 CTTAGACT-GGGAATGAACTCCGTATA
1 CTTAGACTAGGG-ATGAACTCCGTATA
*
18939614 CTTAGACTAGGGATGAACTCTGTAT
1 CTTAGACTAGGGATGAACTCCGTAT
18939639 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATA
Found at i:18940349 original size:159 final size:158
Alignment explanation
Indices: 18939994--18940420 Score: 500
Period size: 159 Copynumber: 2.7 Consensus size: 158
18939984 AACTCCGTAT
* * * *
18939994 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * **
18940059 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGACCGACC-CGGTCCCCCCTGTGTGCTGTCAATC
66 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATC-ACCTCGATCCCCCCTACGTGCTGTCAATC
* *
18940123 CTGCTACCACAACCCTCGGTCCGGTCCGA
130 CCGCTACCACAACCCTCGATCCGGTCCGA
* * * *
18940152 TCTTAGAC-TGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * **
18940216 GCTGGTCGGAGAGGCATAATGCTCAAG-CTGGGGATCACCTCGATCCCCCTCTACGTGCTGTCGG
65 GCCGGTCGGAGAGGCAGAATGCACAAGTC-GGGGATCACCTCGATCCCCC-CTACGTGCTGTCAA
* * ** *
18940280 TCCCGCTGCCACAACCCTCGATCTGGTTGGG
128 TCCCGCTACCACAACCCTCGATCCGGTCCGA
* * * *
18940311 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGGGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* **
18940376 CCAGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCTCGATCC
66 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCACCTCGATCC
18940421 GATCTTAGAC
Statistics
Matches: 224, Mismatches: 39, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
157 5 0.02
158 91 0.41
159 126 0.56
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCACCTCGATCCCCCCTACGTGCTGTCAATCC
CGCTACCACAACCCTCGATCCGGTCCGA
Found at i:18941176 original size:26 final size:26
Alignment explanation
Indices: 18941138--18941190 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18941128 GGCTCAAACT
*
18941138 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18941164 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18941190 C
1 C
18941191 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18941717 original size:26 final size:26
Alignment explanation
Indices: 18941679--18941731 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18941669 CTAGTCTGAT
18941679 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18941705 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18941731 C
1 C
18941732 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18942243 original size:26 final size:26
Alignment explanation
Indices: 18942205--18942257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18942195 TTGGTCTGAT
18942205 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18942231 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18942257 C
1 C
18942258 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18942278 original size:526 final size:513
Alignment explanation
Indices: 18941631--18942661 Score: 1302
Period size: 526 Copynumber: 2.0 Consensus size: 513
18941621 ATACATGCTA
* * * *
18941631 TCGATCCTGCTGCTGGTCCTGCTACTGTAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAA
1 TCGATCCTGCTACTGGTCCTACTACCGTAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAA
**
18941696 CTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGG
66 CTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACCA
* * *
18941761 GCGCTCAGTCGGTCAGAGAGGCAAAATGCACAAGCCAGCG-ACCGGCCCAGTCCCCCCCAACGTG
131 GCGCTCAGCCAGCCAGAGAGGCAAAATGCACAAG-CAGCGAACCGGCCCAGT-CCCCCCAACGTG
* * *
18941825 CTGTCGATCCTACTACCGCAACCCTTGGTCCAG-TCCGATCTTAGACTGGGAATGAACACCATAT
194 CTATCGATCCTACTACCGCAACCCTTGGT-CAGATCCAATCTTAGACTAGGAATGAACACCATAT
* * * * *
18941889 GCCTAAGTCAACCCATGAAACAACCGTTCGGGTACTGAGTCAACCGGAGAGGCATAATGCCCAAG
258 GCCTAAGTCAACCCATGAAACAACCATGCGGGCACTGAGCCAACCGGAAAGGCATAATGCCCAAG
* *
18941954 CCAGGGATAACCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGTCGGTCCTGCTGCCACAACT
323 CCAGGGATAACCCCGATCCCCCTCTGCGTGCTGTCG--------GTC---CC-GCTGCCACAACC
* *
18942019 CTCGG-TCTGACTGGGGCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAATCCACAAAATG
376 CTCGGTTCAG-CTGGGGCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACAAAATG
* * * * *
18942082 AGCGTGTGAGCGC-TT-AG-CAGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGTCC
439 AGCGTGCG-G-GCATTCAGTC-GGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCC
18942144 CCCCTGCATACTG
501 CCCCTGCATACTG
* * * *
18942157 TCGATCCTGTTACTGGTCCTACTGCCGTAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAA
1 TCGATCCTGCTACTGGTCCTACTACCGTAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAA
*
18942222 CTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCCA
66 CTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACCA
* * * * * ** **
18942287 GCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCTGGGAACCGGTCTGGTCCCCCCTGCGTGCT
131 GCGCTCAGCCAGCCAGAGAGGCAAAATGCACAAGCAGCGAACCGGCCCAGTCCCCCCAACGTGCT
* * * * * *
18942352 ATCGATCCTGCTATCGCAACCCTTGGTCTGATCTAATCTTAGACTAGGAATGAACTCCGTATGCC
196 ATCGATCCTACTACCGCAACCCTTGGTCAGATCCAATCTTAGACTAGGAATGAACACCATATGCC
** * ** * * *
18942417 TAAGTCAACCCATGAAATGAGCATGCGGGCGTTGAGCCAGCCGGAAAGGCATAATGCGCAAGCCG
261 TAAGTCAACCCATGAAACAACCATGCGGGCACTGAGCCAACCGGAAAGGCATAATGCCCAAGCCA
* *
18942482 GGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCAGCTGGG
326 GGGATAACCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCAGCTGGG
*
18942547 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCATTCAG
391 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCATTCAG
* *
18942612 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCT
456 TCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCT
18942662 ACGTGCTGTT
Statistics
Matches: 439, Mismatches: 59, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
511 2 0.00
512 3 0.01
513 114 0.26
514 9 0.02
517 3 0.01
524 2 0.00
525 150 0.34
526 156 0.36
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (513 bp):
TCGATCCTGCTACTGGTCCTACTACCGTAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAA
CTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACCA
GCGCTCAGCCAGCCAGAGAGGCAAAATGCACAAGCAGCGAACCGGCCCAGTCCCCCCAACGTGCT
ATCGATCCTACTACCGCAACCCTTGGTCAGATCCAATCTTAGACTAGGAATGAACACCATATGCC
TAAGTCAACCCATGAAACAACCATGCGGGCACTGAGCCAACCGGAAAGGCATAATGCCCAAGCCA
GGGATAACCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCAGCTGGG
GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCATTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCATACTG
Found at i:18942585 original size:159 final size:158
Alignment explanation
Indices: 18942230--18942670 Score: 492
Period size: 159 Copynumber: 2.8 Consensus size: 158
18942220 AACTCCATAT
* ** *
18942230 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCCAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
* * * * * * * * *
18942295 CCAGCCGGAGAGGCAGAATGCACAAGCTGGGAACCGGTCTGGTCCCCCCTGCGTGCTATCGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * * *
18942360 TGCTATCGCAACCCTTGGTCTGATCTAA
131 CGCTACCACAACCCTCGGTCTCAGCTAA
* * * *
18942388 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCA
* * *
18942452 GCCAGCCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTGCGTGCTGTCGAT
* **
18942517 CCCGCTGCCACAACCCTCGGT-TCAGCTGGG
129 CCCGCTACCACAACCCTCGGTCTCAGCT-AA
** * *
18942547 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCATTCA
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCA
* * * *
18942611 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGT
18942671 TCATCCTACT
Statistics
Matches: 235, Mismatches: 43, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
157 1 0.00
158 107 0.46
159 123 0.52
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
CGCTACCACAACCCTCGGTCTCAGCTAA
Found at i:18942747 original size:26 final size:26
Alignment explanation
Indices: 18942718--18942784 Score: 134
Period size: 26 Copynumber: 2.6 Consensus size: 26
18942708 TAAATTGGGA
18942718 ATGAACTCTGTATGCTTAGACTAGGG
1 ATGAACTCTGTATGCTTAGACTAGGG
18942744 ATGAACTCTGTATGCTTAGACTAGGG
1 ATGAACTCTGTATGCTTAGACTAGGG
18942770 ATGAACTCTGTATGC
1 ATGAACTCTGTATGC
18942785 CTAAGTCAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
ATGAACTCTGTATGCTTAGACTAGGG
Found at i:18943843 original size:26 final size:26
Alignment explanation
Indices: 18943807--18943859 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18943797 TCAATTCGAT
* *
18943807 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18943833 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18943859 C
1 C
18943860 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18944367 original size:26 final size:26
Alignment explanation
Indices: 18944331--18944383 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18944321 CTGGTCTGAT
18944331 CTTAAACTGGGAATAAACTCCATATG
1 CTTAAACTGGGAATAAACTCCATATG
* * * *
18944357 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCATATG
18944383 C
1 C
18944384 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCATATG
Found at i:18944724 original size:26 final size:26
Alignment explanation
Indices: 18944687--18944739 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18944677 CCAGTCTAAT
*
18944687 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18944713 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18944739 C
1 C
18944740 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18945036 original size:343 final size:353
Alignment explanation
Indices: 18944331--18945056 Score: 814
Period size: 343 Copynumber: 2.1 Consensus size: 353
18944321 CTGGTCTGAT
* * * * *
18944331 CTTAAACTGGGAATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTTGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * *
18944396 ACGAAATGAGCATGCGGGCACTCAGCCGGTCGAAGAGGCATAATGTGCAAGCCGAGGATCATCTC
66 ACGAAACGAGCATACGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGACCAGCCC
* *
18944461 GGTCCCCCTGTGCATGCTATCGATCCCGCTGCTAGTCCTGCTACCACAACCATCGGTCCAGCTAG
131 GGTCCCCCTCTGCATGCTATCGAT-CCGCTACTAGTCCTGCTA-CAC-ACCATCGGTCCAGCTAG
* * * * ** * *
18944526 GCCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAATGAGCGTCCGGGTGCTCA
193 ACCTTAGACATGGAATAAACTCCGTATACCTAAGCCAACCAACAAAACGAGCGTCCGGGCGCTCA
* * * * * *
18944591 GTCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTCTGTGTGCTATCGAT
258 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGAT
* * *
18944656 CCTGCTGTCACAACCCTCGGTCCAGTCTAAT
323 CCCGCTGCCACAACCCTCGGTCCAGTCTAAG
*
18944687 CTTAGACTTGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
1 CTTAGACTTGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
18944751 CATGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCC
65 CACGAAACGAGCATACGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGACCAGCC
* *
18944816 CGGTCCCCC-CTGCGTGCTATGGAT-C-CTACT-G-CC-GC-A-AC-CC-TCGGTCCAGTCT-GA
130 CGGTCCCCCTCTGCATGCTATCGATCCGCTACTAGTCCTGCTACACACCATCGGTCCAG-CTAGA
* * * * * *
18944870 TCTTAGAC-TGGGAATAAACTCCGTATACCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTGA
194 CCTTAGACAT-GGAATAAACTCCGTATACCTAAGCCAACCAACAAAACGAGCGTCCGGGCGCTCA
* * * *
18944934 GCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGT
258 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGAT
**
18944999 CCCGCTGCCACAACCCTCGGTCCAG-CTTGGG
323 CCCGCTGCCACAACCCTCGGTCCAGTC-TAAG
* *
18945030 CTTAGACATGGAATGAACTCCCTATGC
1 CTTAGACTTGGAATGAACTCCATATGC
18945057 CTAAGCCAAC
Statistics
Matches: 313, Mismatches: 53, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
342 2 0.01
343 163 0.52
344 4 0.01
346 2 0.01
348 1 0.00
349 2 0.01
350 2 0.01
351 1 0.00
352 4 0.01
353 1 0.00
355 12 0.04
356 118 0.38
357 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (353 bp):
CTTAGACTTGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCATACGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGACCAGCCC
GGTCCCCCTCTGCATGCTATCGATCCGCTACTAGTCCTGCTACACACCATCGGTCCAGCTAGACC
TTAGACATGGAATAAACTCCGTATACCTAAGCCAACCAACAAAACGAGCGTCCGGGCGCTCAGCC
GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGATCCC
GCTGCCACAACCCTCGGTCCAGTCTAAG
Found at i:18945068 original size:159 final size:158
Alignment explanation
Indices: 18944712--18945214 Score: 566
Period size: 158 Copynumber: 3.2 Consensus size: 158
18944702 AACTCCGTAT
** *
18944712 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
** *
18944777 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGA-CCAGCCCGGTCCCCCCTGCGTGCTATGGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCCTGCGTGCTATGGATC
* *
18944841 CTACTGCCGCAACCCTCGGTCCAGTCTGA
130 CCACTGCCACAACCCTCGGTCCAGTCTGA
* * * * * *
18944870 TCTTAGAC-TGGGAATAAACTCCGTATACCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * *
18944934 GCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGG-
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTAT-GGA
* *
18944998 TCCCGCTGCCACAACCCTCGGTCCAG-CTTGG
128 TCCCACTGCCACAACCCTCGGTCCAGTC-TGA
* * * *
18945029 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * **
18945094 TCGACTGGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATGGATCC
* ** * * **
18945159 TACTATCGCAACCCTCGGTCTAGTCCAA
131 CACTGCCACAACCCTCGGTCCAGTCTGA
* *
18945187 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18945215 TTAGGCTGGG
Statistics
Matches: 285, Mismatches: 51, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 147 0.52
159 132 0.46
160 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATGGATCC
CACTGCCACAACCCTCGGTCCAGTCTGA
Found at i:18945251 original size:857 final size:867
Alignment explanation
Indices: 18943649--18945269 Score: 1970
Period size: 857 Copynumber: 1.9 Consensus size: 867
18943639 CTGACTGGGG
* *
18943649 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGC
1 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGTGCTCAGC
* * * *
18943714 CGATCGGAGAGGCAGAATGCGTAAGCCAAGGATCGGCTCGATCCCCCCTGCATGCTGCTGATGCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCTCGATCCCCCCTGCATGCTGCTGATCCT
* * *
18943779 GCTGCCACAACCCTCAATTCAATTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGG
131 GCTGCCACAACCCTCAATCCAATTCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGG
* **
18943844 GATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCGTACGGGCGCTCAACCTATCGGAGCG
196 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCG-----CC-ATC-GA-CG
*
18943909 ACCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATC
253 ACCGACCGGAGAGGCAAAATGCACAAGCCGAGGACCGACCCGATCCCCCCTGCGTGCTACCGATC
* * *
18943974 CTGCTACTGGTCCTGCTACCTAACCCTCGGTCCGGTCCTATCTTAGACTGCGAATGAACTCTGTA
318 C-GCTACTGGTCCTG---CCTAACCCTCGGTCCAGTCCTATCTTAGACTGCGAATAAACTCCGTA
* * * * ** *
18944039 TGCTTAGACAACCCACGAAACGAGCGTTCGGGCACTGAGTGGATCAGAGAGGCATAATGCGCAAG
379 TCCTAAGACAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAG
* * * * * *
18944104 TCGGGGATCGGCTCGGTCCCCCTCTGCATGCTACCAGTCCCACTACCATAACCCTCAGTCCGGCT
444 CCGGGGATCGACCCGATCCCCCTCTGCATGCTACCAGTCCCACTACCACAACCCTCAGTCCAGCT
* * ** * **
18944169 GGTGGTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCT
509 GGTGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACT
* * ** * * *
18944234 CTGCCAGTCGGAGAGGCAGAATGTGCAAGTCGAAGATCAGCCTGGTCCCCCCTGTGTGCTACCGA
574 CAGCCACTCGGAGAGGCAGAATGCCCAAGCCGAAGATCAGCCCGGTCCCCCCTGCGTGCTACCGA
** * * **
18944299 TCCTGTTGTCGCAACACTCGATCTGGTCTGATCTTAAACTGGGAATAAACTCCATATGCTTAGAC
639 TCCTACTATCGCAACACTCGATCTAGTCCAATCTTAAACTGGGAATAAACTCCATATGCTTAGAC
*
18944364 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCACTCAGCCGGTCGA
704 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGTCGA
18944429 AGAGGCATAATGTGCAAGCCGAGGATCATCTCGGTCCCCCTGTGCATGCTATCGATCCCGCTGCT
769 AGAGGCATAATGTGCAAGCCGAGGATCATCTCGGTCCCCCTGTGCATGCTATCGATCCCGCTGCT
18944494 AGTCCTGCTACCACAACCATCGGTCCAGCTAGGC
834 AGTCCTGCTACCACAACCATCGGTCCAGCTAGGC
* * * * * *
18944528 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAATGAGCGTCCGGGTGCTCAGT
1 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGTGCTCAGC
*** * ** *
18944593 CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGC-CTGGTCCCCCTCTGTGTGCT-ATCGAT
66 CGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCTC-GATCCCCC-CTGCATGCTGCT-GAT
* ** *
18944656 CCTGCTGTCACAACCCTCGGTCC-AGTCTAATCTTAGACTT-GGAATGAACTCCGTATGCTTAGA
128 CCTGCTGCCACAACCCTCAATCCAATTC-AATCTTAGA-TTGGGAATGAACTCCGTATGCTTAGA
**
18944719 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCG-C-TC-A-G-C
191 C-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCCATCGACGAC
** * * * * **
18944778 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACC-AGCCCGGTCCCCCCTGCGTGCTATGGAT-C
255 CGACCGGAGAGGCAAAATGCACAAGCCGAGGACCGA-CCCGATCCCCCCTGCGTGCTACCGATCC
*
18944841 -CTACT-G-CC-G-C-AACCCTCGGTCCAGT-CTGATCTTAGACTGGGAATAAACTCCGTATACC
319 GCTACTGGTCCTGCCTAACCCTCGGTCCAGTCCT-ATCTTAGACTGCGAATAAACTCCGTAT-CC
* ** *
18944899 TAAGTCAACCCACAAAACGAGCGTGCGGGCGTTGAGCCGACCGGAGAGGCATAATGCGCAAGCCG
382 TAAGACAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCG
* ** * * * *
18944964 GGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCAGCTTGG
447 GGGATCGACCCGATCCCCCTCTGCATGCTACCAGTCCCACTACCACAACCCTCAGTCCAGC-TGG
18945029 -GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCA
511 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCA
* * *
18945093 GTCGACT-GGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGAT
576 G-CCACTCGGAGAGGCAGAATGCCCAAGCCGAAGATCAGCCCGGTCCCCCCTGCGTGCTACCGAT
* * * * ** *
18945157 CCTACTATCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGGCT
640 CCTACTATCGCAACACTCGATCTAGTCCAATCTTAAACTGGGAATAAACTCCATATGCTTAGACT
* * *
18945222 GGGGTTGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
705 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGG
18945270 ACGCTCAGTC
Statistics
Matches: 629, Mismatches: 102, Indels: 44
0.81 0.13 0.06
Matches are distributed among these distances:
855 2 0.00
856 38 0.06
857 308 0.49
858 6 0.01
861 1 0.00
862 2 0.00
863 1 0.00
864 5 0.01
866 2 0.00
867 52 0.08
868 1 0.00
870 1 0.00
872 2 0.00
874 1 0.00
878 1 0.00
879 99 0.16
880 104 0.17
881 3 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (867 bp):
CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGTGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCTCGATCCCCCCTGCATGCTGCTGATCCT
GCTGCCACAACCCTCAATCCAATTCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCCATCGACGACCGACCG
GAGAGGCAAAATGCACAAGCCGAGGACCGACCCGATCCCCCCTGCGTGCTACCGATCCGCTACTG
GTCCTGCCTAACCCTCGGTCCAGTCCTATCTTAGACTGCGAATAAACTCCGTATCCTAAGACAAC
CCACAAAACGAGCGTGCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCGGGGATCGAC
CCGATCCCCCTCTGCATGCTACCAGTCCCACTACCACAACCCTCAGTCCAGCTGGTGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAGCCACTCGGA
GAGGCAGAATGCCCAAGCCGAAGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCTACTATCGC
AACACTCGATCTAGTCCAATCTTAAACTGGGAATAAACTCCATATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGTCGAAGAGGCATAATG
TGCAAGCCGAGGATCATCTCGGTCCCCCTGTGCATGCTATCGATCCCGCTGCTAGTCCTGCTACC
ACAACCATCGGTCCAGCTAGGC
Found at i:18945739 original size:12 final size:12
Alignment explanation
Indices: 18945714--18945749 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
18945704 TTGATGAGGC
18945714 ATAGGGGCCCAAT
1 ATAGGGG-CCAAT
18945727 ATAGGGGCCAAT
1 ATAGGGGCCAAT
*
18945739 ATAAGGGCCAA
1 ATAGGGGCCAA
18945750 GTACCAGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 15 0.68
13 7 0.32
ACGTcount: A:0.36, C:0.19, G:0.31, T:0.14
Consensus pattern (12 bp):
ATAGGGGCCAAT
Found at i:18945956 original size:26 final size:26
Alignment explanation
Indices: 18945918--18945970 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18945908 GGCTCAAACA
18945918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18945944 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18945970 C
1 C
18945971 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18946567 original size:343 final size:343
Alignment explanation
Indices: 18945920--18946597 Score: 837
Period size: 343 Copynumber: 2.0 Consensus size: 343
18945910 CTCAAACACT
* * *
18945920 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCAC
* * ** ** *
18945985 GAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGA
66 GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATAAGCAAGCCAAGGACCAGCCCGA
* * *
18946050 TCCCCCTCTGCGTGCTGTCAGTCTCACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGA
131 TCCCCCTCTGCGTGCTGTCAGTCTCACTACCACAACCCTCGATCCGGCTGGAGCTTAGACATGGA
* * * ** *
18946115 ATGAACTCCCTATGCCTAAGCCAAGCAATGAAACGGGCGTGCGGGGGCTCAGCCGGTCGGAGAGG
196 ATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGG
* *
18946180 CAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTTACGTGCTGCC-GATCCTACTGCCACAAC
261 CAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTTACGTGCTGCCTG-TCCCACTGCCACAAC
*
18946244 CCTCGGTCTGGTTCGATCA
325 CCTCGATCTGGTTCGATCA
*
18946263 TAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCAC
* * * *
18946328 GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTATAATAAGCAAGCCAAGGACCGGCTCGA
66 GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATAAGCAAGCCAAGGACCAGCCCGA
* ** * * *
18946393 TCCCCCTCTGTGTGCTGTC-GATCTTGCTACCGCAACCCTC-AGTCCGGTCT-GATCTTAGA-TT
131 TCCCCCTCTGCGTGCTGTCAG-TCTCACTACCACAACCCTCGA-TCCGG-CTGGAGCTTAGACAT
** * * * * *
18946454 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGCACTGAG-CGATCGGA
193 -GGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGATCGGA
* * * ** * *
18946518 GAGGCATAATGCACAAGCTGGGGATGGGCCCGGTCCCCCTCTGCGTGCTGCCTGTCCCGCTGCCA
257 GAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCT-TACGTGCTGCCTGTCCCACTGCCA
18946583 CAACCCTCGATCTGG
321 CAACCCTCGATCTGG
18946598 CTGGGGCTTA
Statistics
Matches: 282, Mismatches: 47, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
342 44 0.16
343 235 0.83
344 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (343 bp):
TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATAAGCAAGCCAAGGACCAGCCCGA
TCCCCCTCTGCGTGCTGTCAGTCTCACTACCACAACCCTCGATCCGGCTGGAGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGG
CAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTTACGTGCTGCCTGTCCCACTGCCACAACC
CTCGATCTGGTTCGATCA
Found at i:18946748 original size:158 final size:158
Alignment explanation
Indices: 18946286--18946787 Score: 452
Period size: 158 Copynumber: 3.2 Consensus size: 158
18946276 AACTCCATAT
* * *
18946286 GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCACGAAACAGAGC-TGCGGGCACTCA
* ** * * * *
18946350 GCCGACCGGAGAGGTATAATAAGCAAGCCAAGGACCGGCTCGATCCCCCTCTGTGTGCTGTCGAT
65 G-CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGAT
*
18946415 CTTGCTACCGCAACCCTC-AGTCCGGTCTGA
129 CTTGCTGCCGCAACCCTCGA-TCCGGTCTGA
* * **
18946445 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGT-CAACCCACGAAAC-GAG-TGTTCGGGCAC
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAA-TCCAACCCACGAAACAGAGCTG--CGGGCAC
* * * * * * * *
18946506 TGAGCGATCGGAGAGGCATAATGCACAAGCTGGGGATGGGCCCGGTCCCCCTCTGCGTGCTGCCT
62 TCAGCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGTC-
** * * *
18946571 G-TCCCGCTGCCACAACCCTCGATCTGG-CTGGG
126 GATCTTGCTGCCGCAACCCTCGATCCGGTCT-GA
* * *
18946603 GCTTAGACATGGAATGAACTCCCTATGCCTAATCCAACCCATGAAACAG-GCATGCGGGCACTTA
1 GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCACGAAACAGAGC-TGCGGGCACTCA
* * *
18946667 GTCGACCGGAGAAGCAAAATGCGTAAGCCGAGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGAT
65 G-CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGAT
* * * * *
18946731 CTTGCTGTCGCATCCCTCGATCC-ATGTAA
129 CTTGCTGCCGCAACCCTCGATCCGGTCTGA
*
18946760 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
18946788 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 56, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 30 0.11
158 146 0.54
159 92 0.34
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCACGAAACAGAGCTGCGGGCACTCAG
CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATCT
TGCTGCCGCAACCCTCGATCCGGTCTGA
Found at i:18952912 original size:184 final size:183
Alignment explanation
Indices: 18952599--18953164 Score: 645
Period size: 196 Copynumber: 3.0 Consensus size: 183
18952589 TTTGACAGGG
* * *
18952599 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCACCCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
18952664 TCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTATCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTC-GGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCC
* * *
18952729 TGCTGCCGCAACCTTCGGTCCGATTCAATCTTAGGCTGAGAATGAACTCCGTAT
130 TGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGAACTCCGTAT
* * * * * *
18952783 GCTTAGAC-TGGGGATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGTCACTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
18952847 ACCGATCAGAGAGGTAGAATGCGCAAG-CTGGCGATCGACCCGGTCCTCACTACGTGCTGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTC-GG-GATCGGCCCGGTCCCCCCTACGTGC--T--AT
* * *
18952911 CCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCAATCCGATCTTAGACT-AGGAATGAACTCC
124 -C-G--A----TCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGA-GAATGAACTCC
18952975 GTAT
180 GTAT
*
18952979 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
18953044 CCGGTCGGAGAGGCAGAAT-CTGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGC-GCAAGTCG-GGATCGGCCCGGTCCCCCCTACGTGCTATCGATC
* * * * *
18953108 CTGCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
129 CTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGAACTCCGTAT
18953163 GC
1 GC
18953165 CTAAGTCAAC
Statistics
Matches: 313, Mismatches: 49, Indels: 40
0.78 0.12 0.10
Matches are distributed among these distances:
183 4 0.01
184 145 0.46
186 1 0.00
188 3 0.01
189 1 0.00
190 2 0.01
191 1 0.00
192 3 0.01
194 1 0.00
195 2 0.01
196 147 0.47
197 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCT
GCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGAACTCCGTAT
Found at i:18952983 original size:26 final size:26
Alignment explanation
Indices: 18952954--18953006 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18952944 CCAATCCGAT
18952954 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18952980 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18953006 C
1 C
18953007 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18953343 original size:159 final size:158
Alignment explanation
Indices: 18952979--18953353 Score: 450
Period size: 158 Copynumber: 2.4 Consensus size: 158
18952969 AACTCCGTAT
* * * *
18952979 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
* * *
18953044 CCGGTCGGAGAGGCAGAATCTGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
66 CCGATCGGAGAGGCAGAATATGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
* * *
18953109 TGCAGTCGCAACCCTCAGTCCGGTCCAA
131 CGCAGCCACAACCCTCAGTCCGGTCCAA
* * * *
18953137 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCACTGA
1 GCTTAGACATGGG-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * *
18953201 ACCGATCGGAGAGGCATAATATGCAAGTCGAGGATCGGCTCGGTCCCCTTCTGTGTGCTACC-AG
65 ACCGATCGGAGAGGCAGAATATGCAAGTCGAGGATCGGCCCGGTCCCC-CCTGCGTGCTACCGA-
* * ***
18953265 TCCCGCTGCCACAACCCTCGGTCCGG-CTGGG
128 TCCCGCAGCCACAACCCTCAGTCCGGTC-CAA
* * * *
18953296 GCTTAGACATGGGATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGG
1 GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGG
18953354 TGCTCAAACC
Statistics
Matches: 182, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
157 3 0.02
158 98 0.54
159 77 0.42
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
CCGATCGGAGAGGCAGAATATGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
CGCAGCCACAACCCTCAGTCCGGTCCAA
Found at i:18953487 original size:26 final size:26
Alignment explanation
Indices: 18953456--18953506 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18953446 CTGGTATGAT
18953456 CTTAGACT-GGGAATGAACTCCGTATA
1 CTTAGACTAGGG-ATGAACTCCGTATA
18953482 CTTAGACTAGGGATGAACTCCGTAT
1 CTTAGACTAGGGATGAACTCCGTAT
18953507 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATA
Found at i:18953852 original size:26 final size:26
Alignment explanation
Indices: 18953823--18953873 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18953813 CTAGTCCGAT
18953823 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18953849 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
18953874 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18953958 original size:367 final size:356
Alignment explanation
Indices: 18953270--18953961 Score: 827
Period size: 367 Copynumber: 1.9 Consensus size: 356
18953260 ACCAGTCCCG
* *
18953270 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGGATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * *
18953335 CACAAAACGGGCGTGCGGGTGCTCAAACCAGCCGGATAGGCAGAATGCACAAGCCAGGGATCGAC
66 CACAAAACGAGCGTGCGGGCGCTCAAACCAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGAC
* * * *
18953400 CTAGTCCTCCCTACGTGCTGTCGATCTTGCTATCGCAACCCTTGGTCTGGTATGATCTTAGACTG
131 CTAGTCCCCCCTACGTGCTGTCGATCTTGCTATCGCAACCCTCGGTCTAGTACGATCTTAGACTG
* * *
18953465 GGAATGAACTCCGTATACTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGA
196 GGAATGAACTCCGTATACTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCCATAAAACGA
** * ** * * * * *
18953530 GCATGCGGGCGTTCAGTCGGCCGAAGAGGCATAATGTGAAAGTTGGGGATCAGTCCGATCCCCCT
261 GCATGCGGGCACTCAGCCAACCGAAGAGGCAGAATGTGAAAGCTGAGGACCAGACCGATCCCCCT
18953595 CTACGTGTTGTCGATCCCGCTGTAGGTCCTA
326 CTACGTGTTGTCGATCCCGCTGTAGGTCCTA
* *
18953626 CTGCCACAACCCTCGATCCTGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * *
18953691 CACGAAACGAGCGTGTGGGCGCTC--AGCTGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
66 CACAAAACGAGCGTGCGGGCGCTCAAACCAG-CCGGAGAGGCAGAATGCACAAGCCAGGGATCGA
* *
18953754 CCT-GATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCTAGT
130 CCTAG-TCCCCCCTACGTGCTGTCGA---T-CT--T-G--CT-AT--CGCAACCCTCGGTCTAGT
* * *
18953818 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTCTGTATACCTAAGC
182 ACGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTA-GGAATGAACTCCGTATACCTAAGC
* * * * *
18953882 CAACCCATAAAATGAGCGTGCGGGCACTCA-CCAATCGGAGAGGCAGAATGTGTAAGCTGAGGAC
246 CAACCCATAAAACGAGCATGCGGGCACTCAGCCAACCGAAGAGGCAGAATGTGAAAGCTGAGGAC
*
18953946 CGGACTCGATCCCCCT
311 CAGAC-CGATCCCCCT
18953962 GCGTGCTATC
Statistics
Matches: 278, Mismatches: 42, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
354 4 0.01
355 50 0.18
356 81 0.29
358 1 0.00
359 2 0.01
361 1 0.00
362 1 0.00
364 2 0.01
365 1 0.00
366 28 0.10
367 107 0.38
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (356 bp):
CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACAAAACGAGCGTGCGGGCGCTCAAACCAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGAC
CTAGTCCCCCCTACGTGCTGTCGATCTTGCTATCGCAACCCTCGGTCTAGTACGATCTTAGACTG
GGAATGAACTCCGTATACTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCCATAAAACGA
GCATGCGGGCACTCAGCCAACCGAAGAGGCAGAATGTGAAAGCTGAGGACCAGACCGATCCCCCT
CTACGTGTTGTCGATCCCGCTGTAGGTCCTA
Found at i:18954627 original size:866 final size:861
Alignment explanation
Indices: 18952783--18954738 Score: 2462
Period size: 866 Copynumber: 2.3 Consensus size: 861
18952773 AACTCCGTAT
* ** * * *
18952783 GCTTAGAC-TGGGGATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGTCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC-
* * * * * * *
18952847 ACCGATCAGAGAGGTAGAATGCGCAAGCTGGCGATCGACCCGGTCCTCACTACGTGCTGTCGATC
64 AGCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCG-CCTGATCCCCACTACGTGCTGTCGATC
* * * *
18952912 CTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCGT
128 CTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
18952977 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
193 ATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTC
** * *
18953042 AGCCGGTCGGAGAGGCAGAATCTGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGAT
258 AGCCAATCGGAGAGGCAGAATCTGCAAGTCGAGGACCGGCCCGATCCCCCCTGCGTGCTATCGAT
18953107 CCTGCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
323 CCTGCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
18953172 AACCCACGAAACGAGCATTCGGGCACTGAACCGATCGGAGAGGCATAATATGCAAGTCGAGGATC
388 AACCCACGAAACGAGCATTCGGGCACTGAACCGACCGGAGAGGCATAATACGCAAGTCGAGGATC
* * * * *
18953237 GGCTCGGTCCCCTTCTGTGTGCTACCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAG
453 AGCTCGGTCCCCTTCTGCGTGCTACCAGTCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAC
* *
18953302 ACATGGGATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAAACCAGC
518 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGTGCTCAAACCAGC
18953367 CGGATAGGCAGAATGCACAAGCCAGGGATCGACCTAGTCCTCCCTACGTGCTGTCGATCTTGCTA
583 CGGATAGGCAGAATGCACAAGCCAGGGATCGACCTAGTCCT-CC-AC--GCTGTCGA--TTGCTA
** * * *
18953432 TCGCAACCCTTGGTCTGGTATGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTAGGGATG
642 TCGCAACCCTCAGTCCGATATGATCTTAGACTGGGAATGAACTCCATATACTTAGACTAGGGATG
* **
18953497 AACTCCGTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGCGTTCAGTCGGCCGAAGAGGCAT
707 AACTCCGTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGCCTTCAGAAGGCCGAAGAGGCAT
* * * * * ** * *
18953562 AATGTGAAAGTTGGGGATCAGTCCGATCCCCCTCTACGTGTTGTCGATCCCGCTGTAGGTCCTAC
772 AATGCGAAAGTCGAGGATCAGCCCGATCCCCCTCTACATGTACTCGATCCCACTGCAGGTCCTAC
18953627 TGCCACAACCCTCGATCCTGCTGGG
837 TGCCACAACCCTCGATCCTGCTGGG
* *
18953652 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
18953717 CTGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
66 C-GATCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GCCTGATCCCCACTACGTGCTGTCGATCC
*
18953782 TGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTA
129 TGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
18953847 TGCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCATAAAATGAGCGTGCGGGCACTCA
194 TGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * *
18953912 -CCAATCGGAGAGGCAGAATGTGTAAG-CTGAGGACCGGACTCGAT-CCCCCTGCGTGCTATCGA
259 GCCAATCGGAGAGGCAGAATCTGCAAGTC-GAGGACCGG-CCCGATCCCCCCTGCGTGCTATCGA
** * * *
18953974 TCCTGCAGTCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTATGT
322 TCCTGCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
18954039 CAACCCACGAAACGAGCGTTTGGGCATTGAGCCGACCGGAGAGGCATAATACGTAAGTCGAGGAT
387 CAACCCACGAAACGAGCATTCGGGCACTGAACCGACCGGAGAGGCATAATACGCAAGTCGAGGAT
*
18954104 CAGCTCGGT-CCCTCTCTGCGTGCTA-CAGGTCCCACTGCCACAACTCTCGATCCGGCTAGGGG-
452 CAGCTCGGTCCCCT-TCTGCGTGCTACCA-GTCCCACTGCCACAACCCTCGATCCGGCT-GGGGC
** *
18954166 TT-CACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTC-AGC
514 TTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGTGCTCAAAC
* * * * * * *
18954229 C-GACCGGATAGGTAGAATGCACAAGTCGGGGATTG-GCTCGGTCCT-C-C-CTG-C-A-TGCTG
579 CAG-CCGGATAGGCAGAATGCACAAGCCAGGGATCGACCT-AGTCCTCCACGCTGTCGATTGCTA
* *
18954286 TCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATACTTAGACT-GGTGTT
642 TCGCAACCCTCAGTCCGATATGATCTTAGACTGGGAATGAACTCCATATACTTAGACTAGG-GAT
* *
18954350 GAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCACTTAACCGACTGGAAGGCCA
706 GAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGC-CTT---C-A---GAAGG-C-
* * * * * **
18954415 GTCGGAGAGGCATAATGCGTAA-TCCGAGGATCAGCCCGGTCCCCTTTTTTATGCTACT-GATCC
761 --CGAAGAGGCATAATGCGAAAGT-CGAGGATCAGCCCGATCCCCCTCTACATG-TACTCGATCC
* *
18954478 CACTGCCA-GTCCTGCTGCCATAACCCTCGATCC-GACTGGG
822 CACTG-CAGGTCCTACTGCCACAACCCTCGATCCTG-CTGGG
18954518 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
18954583 TCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGTCTGATCCCCTCTACGTGCTATCGATCC
66 -CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GCCTGATCCCCACTACGTGCTGTCGATCC
* ** ** * *
18954648 TACTGCTGGTCCTGCTGCCATAACCCTTAGTCCGGTCCGATCTTAGACTGGGATTGAACTCCGTA
129 TGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
18954713 TGCTTAGACATGGAATGAACTCCGTA
194 TGCTTAGACATGGAATGAACTCCGTA
18954739 GTGCCTTAAG
Statistics
Matches: 944, Mismatches: 115, Indels: 59
0.84 0.10 0.05
Matches are distributed among these distances:
853 2 0.00
854 100 0.11
855 2 0.00
857 1 0.00
858 2 0.00
859 4 0.00
862 4 0.00
863 1 0.00
864 1 0.00
865 5 0.01
866 311 0.33
867 64 0.07
868 214 0.23
869 231 0.24
870 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (861 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGCCTGATCCCCACTACGTGCTGTCGATCCTG
CTGCTGGTCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
CAATCGGAGAGGCAGAATCTGCAAGTCGAGGACCGGCCCGATCCCCCCTGCGTGCTATCGATCCT
GCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCATTCGGGCACTGAACCGACCGGAGAGGCATAATACGCAAGTCGAGGATCAGC
TCGGTCCCCTTCTGCGTGCTACCAGTCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTACACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGTGCTCAAACCAGCCGG
ATAGGCAGAATGCACAAGCCAGGGATCGACCTAGTCCTCCACGCTGTCGATTGCTATCGCAACCC
TCAGTCCGATATGATCTTAGACTGGGAATGAACTCCATATACTTAGACTAGGGATGAACTCCGTA
TGCCTAAGTCAACCCATAAAACGAGCATGCGGGCCTTCAGAAGGCCGAAGAGGCATAATGCGAAA
GTCGAGGATCAGCCCGATCCCCCTCTACATGTACTCGATCCCACTGCAGGTCCTACTGCCACAAC
CCTCGATCCTGCTGGG
Done.