Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 172 of 402
Found at i:18954718 original size:26 final size:26
Alignment explanation
Indices: 18954689--18954738 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18954679 CCGGTCCGAT
*
18954689 CTTAGAC-TGGGATTGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18954715 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
18954739 GTGCCTTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18955328 original size:26 final size:26
Alignment explanation
Indices: 18955290--18955342 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18955280 TCGGCCCGAT
18955290 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18955316 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
18955342 C
1 C
18955343 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18955653 original size:158 final size:159
Alignment explanation
Indices: 18955316--18955659 Score: 374
Period size: 159 Copynumber: 2.2 Consensus size: 159
18955306 ACTCTGTATG
* * *
18955316 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
* * * * * *
18955381 CAACCGGAGAGGCGTAATGAGTAAGCAGGGGATTGGCCCGGTCCCCCTCTGTGTGCTGTCGATCC
66 CAACCGGAGAGACGTAATGAGCAAGCACGGGATAGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
18955446 CACTGCCACAACCCTCGGTCTGACTGGGC
131 CACTGCCACAACCCTCGGTCGGACTCGAC
* * *
18955475 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC-TTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTT-CGGGCGCTCAG
* * * * * *
18955539 TCGACCGGAGAGACAG-AATGCGCAAGCCCGGGATAGACCCGGT-CCCCTCTGCGTGCTTTTGAT
65 CCAACCGGAGAGAC-GTAATGAGCAAGCACGGGATAGACCCGGTCCCCCTCTGCGTGCTGTCGAT
** * * * *
18955602 CCTGCTGTCGCAACCCTCGGTCCGGTC-CGAT
129 CCCACTGCCACAACCCTCGGT-CGGACTCGAC
18955633 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
18955660 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 61 0.40
159 90 0.59
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
CAACCGGAGAGACGTAATGAGCAAGCACGGGATAGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
CACTGCCACAACCCTCGGTCGGACTCGAC
Found at i:18955677 original size:26 final size:26
Alignment explanation
Indices: 18955633--18955682 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18955623 CCGGTCCGAT
*
18955633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
18955659 CTTAGACTGGGGATAAACTTCGTA
1 CTTAGACTGGGAATAAACTCCGTA
18955683 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18956393 original size:26 final size:26
Alignment explanation
Indices: 18956355--18956407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18956345 GGCTCAAACT
*
18956355 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18956381 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18956407 C
1 C
18956408 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18956883 original size:158 final size:156
Alignment explanation
Indices: 18956381--18956883 Score: 472
Period size: 159 Copynumber: 3.2 Consensus size: 156
18956371 ACTCCGTATG
18956381 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
18956446 CGGTCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGTGTGCTATCGATCT
65 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCCTGCGTGCTATCGATCC
** *
18956511 TGCTGCTGTAACCCTTGGT-TCGGTCCAAT
129 TGCTGC-GTAACCCTCAGTCT-GGTCCGAT
* * ** * ** * * *
18956540 CTTAGACTAGAAATGAACTCCGTATGCAAAAGTCAACCCATAAAATGAGC-TGGCGGGTGCTGAG
1 CTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGT-GCGGGCGCTCAG
* *** * * * * *
18956604 CCTACCGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGATCCCCCTCTGCGTGTTGTCGGTC
64 TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATC
** ** **
18956669 CTGCTGCCACAACCCTCAGTCTGGTTGGGG
128 CTGCTG-CGTAACCCTCAGTCTGGTCCGAT
* * * * *
18956699 CTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACAGGCGCTCAGT
1 CTTAGA-CTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
18956764 CGGTCGAAGATGCAGAATGCGTAAACCGAGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCT
65 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCT
*
18956829 ACTGTCGTAACCCTCAGTCTGAG-CCGAT
130 GCTG-CGTAACCCTCAGTCTG-GTCCGAT
*
18956857 CTTAGACTGGGAATGAACTTCATATGC
1 CTTAGACT-GGAATGAACTCCATATGC
18956884 TTAGACTAGG
Statistics
Matches: 263, Mismatches: 72, Indels: 19
0.74 0.20 0.05
Matches are distributed among these distances:
157 1 0.00
158 61 0.23
159 197 0.75
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
GGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTG
CTGCGTAACCCTCAGTCTGGTCCGAT
Found at i:18956908 original size:26 final size:26
Alignment explanation
Indices: 18956857--18956909 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18956847 CTGAGCCGAT
*
18956857 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18956883 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
18956909 C
1 C
18956910 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18957412 original size:170 final size:171
Alignment explanation
Indices: 18957025--18957421 Score: 432
Period size: 171 Copynumber: 2.3 Consensus size: 171
18957015 CTGCCAGTCT
* * * * *
18957025 TGCTGCCACAACCCTCGGTCCGATTAGG-GCTTAGACATGGAATGTACTCCGTATGCCTAAGCTA
1 TGCTGCCACAACCCTCTGTCCGACT-GGAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
* * * * *
18957089 ACCCACGAAATGAGCGTACGGGTGCTCAACCGACCGAGAAGGCAGAATGTGCAAGCCGAGGATCG
65 ACCCACAAAACGAGCATACAGGTGCTCAACCGACCGAGAAGGCAGAATGCGCAAGCCGAGGATCG
18957154 GCCTGACCCCCCTCTACGTGCTACCGATCCCGTTGTCGGTCC
130 GCCTGACCCCCCTCTACGTGCTACCGATCCCGTTGTCGGTCC
*
18957196 TGCTGCCACAACCCTCTGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCTGTCCGACTGGAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* ** * * *
18957261 CCCACAAAACGAGCATGCAGGTGCTCAGTCGATCGA-AGAGGCAGAATGCGCATGCCGGGGATCG
66 CCCACAAAACGAGCATACAGGTGCTCAACCGACCGAGA-AGGCAGAATGCGCAAGCCGAGGATCG
* ** * ** *
18957325 ATCC-GGTCCCCC-CTGCGTGCTGTCGATCCTGTTG-CTGGTCC
130 -GCCTGACCCCCCTCTACGTGCTACCGATCCCGTTGTC-GGTCC
* * *
18957366 TGCTGCCACAACCCTC-GATCTGGTCT-GATCTTAGAC-TGGGAATGAACTCTGTATGC
1 TGCTGCCACAACCCTCTG-TC-CGACTGGAGCTTAGACAT-GGAATGAACTCTGTATGC
18957422 TTAGCCATGG
Statistics
Matches: 192, Mismatches: 27, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
169 3 0.02
170 70 0.36
171 117 0.61
172 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (171 bp):
TGCTGCCACAACCCTCTGTCCGACTGGAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
CCCACAAAACGAGCATACAGGTGCTCAACCGACCGAGAAGGCAGAATGCGCAAGCCGAGGATCGG
CCTGACCCCCCTCTACGTGCTACCGATCCCGTTGTCGGTCC
Found at i:18957424 original size:26 final size:26
Alignment explanation
Indices: 18957395--18957447 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18957385 CTGGTCTGAT
*
18957395 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18957421 CTTAGCCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18957447 C
1 C
18957448 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18957565 original size:526 final size:512
Alignment explanation
Indices: 18956354--18958020 Score: 1574
Period size: 526 Copynumber: 3.2 Consensus size: 512
18956344 TGGCTCAAAC
*
18956354 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
18956418 CCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGC
65 CCACGAAACGAGCGTGCGGGCGCTCAGCCGCTCGAAGAGGCAGAATACGCAAGCCGGGGATCGAC
* * * * * * * * *
18956483 CCGATCCCCCCCTGTGTGCTATCGATCTTGCTGCTGTAACCCTTGGTTCGGTCCA-ATCTTAGAC
130 CCGATTCCCCCCTATGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCCGGTCTAGATCTTAGAC
* ** * *
18956547 TAGAAATGAACTCCGTATGCAAAAGTCAACCCATAAAATGAGC-TGGCGGGTGCTGAGCCTACCG
195 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT-GCGGGTGCTGAGCCGACCG
* * *
18956611 A-AGAGGCATAATGCGCAAGCCGGGGATTGGCCCGATCCCC-CTC-TG--CGT--GTTGTCGGTC
259 AGA-AGGCATAATGCGCAAGCCGGGGATCGGCCTGACCCCCTCTCGTGCTCGTCCGTTGTCGGTC
** *
18956669 CTGCTGCCACAACCCTCAGTCTGGTTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCA
323 CTGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
18956734 ACCCACGAAACGGGCGTACAGGCGCTCAGTCGGTCGAAGATGCAGAATGCGTAAACCGAGGATCA
388 ACCCACGAAAC-GGCGTACAGGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCA
*
18956799 GCCCGGTCCCCCCTGCGTGCTACCGATCCTACTGTC-G-T--AACCCTC-AGTCTGAG-CCGA
452 GCCCGGTCCCCCCTGCGTGCTACCGATCCTACTGTCTGCTGCAACCCTCGA-TCTG-GTCTGA
* * * *
18956856 TCTTAGACTGGGAATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * * **
18956921 CATGAAACGAGCGTGCGGGTGCTCAACCGGTCGAA-AAG-ATGTATTACGAAAGTCAAGGATC-A
66 CACGAAACGAGCGTGCGGGCGCTCAGCCGCTCGAAGAGGCA-G-AATACGCAAGCCGGGGATCGA
* *
18956983 TCCC-AGTCCCCCTCTGCATGTTGCTGATCCCGCTGCC-AGTCTTGCTGCCACAACCCTCGGTCC
129 -CCCGATTCCCCC-CT--ATG-TGCTG-T--CGAT-CCTA--C-TGCTG---CAACCCTCGGTCC
* ** * * *
18957046 GAT-TAGGGCTTAGAC-ATGGAATGTACTCCGTATGCCTAAG-CTAACCCACGAAATGAGCGTAC
179 GGTCTAGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTC-AACCCACAAAATGAGCGTGC
* * * * *
18957108 GGGTGCTCAACCGACCGAGAAGGCAGAATGTGCAAGCCGAGGATCGGCCTGACCCCCCTCTACGT
242 GGGTGCTGAGCCGACCGAGAAGGCATAATGCGCAAGCCGGGGATCGGCCTGA-CCCCCTCT-CGT
* *
18957173 GCTACCGATCCCGTTGTCGGTCCTGCTGCCACAACCCTCTGTCCGACTGGGGCTTAGACATGGAA
305 GCT--CG-T-CCGTTGTCGGTCCTGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAA
** * * * *
18957238 TGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGTGCTCAGTCGATCGAAGAGGC
366 TGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTACAGGCGCTCAGTCGATCGAAGAGGC
* * ** *
18957303 AGAATGCGCATGCCGGGGATC-GATCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTGCTGGTCCT
430 AGAATGCGCAAGCCGGGGATCAG-CCCGGTCCCCCCTGCGTGCTACCGATCC---TACT-GT-CT
18957367 GCTGCCACAACCCTCGATCTGGTCTGA
489 GCTG---CAACCCTCGATCTGGTCTGA
* *
18957394 TCTTAGACTGGGAATGAACTCTGTATGCTTAG-CCATGGAATGAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAAC
* **
18957458 CCATGAAACGAGCGTGCGGGCATTCAGCCGACT-GAAGAGGCAGAATACGCAAGCCGGGGATCGA
65 CCACGAAACGAGCGTGCGGGCGCTCAGCCG-CTCGAAGAGGCAGAATACGCAAGCCGGGGATCGA
* ** * *
18957522 CCCGATTCCCCCCTACGTGCTGTCGATCCTACCACTGCAACCCTCAGTCTGGTCT-GATCTTAGA
129 CCCGATTCCCCCCTATGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCCGGTCTAGATCTTAGA
* * * * * *
18957586 CTGGGAATGAACTCCGTATGCCTAGGTCAACCTACAAAATGAGCGTGCGGGTGCTGAGCTAGTCG
194 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGC-CGACC
* * *
18957651 GAG-AGGCATAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGCGTGCT-G-CCG--GTC--
258 GAGAAGGCATAATGCGCAAGCCGGGGATCGGC-CTGACCCCCTCT-CGTGCTCGTCCGTTGTCGG
* *
18957709 -CC-GCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACGCCCTATGCCTAAGC
321 TCCTGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
18957772 CAACCCACGAAACGGACGTTCGGGCGCTCAGTCGACCGGAGAGGCAGAA-GCGCAAGCTGGGGAT
386 CAACCCACGAAACGG-CGTACAGGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGGGGAT
* * *
18957836 CAGCCCGGT--CCCCTACGTGCTACCGATCCTACTG--T-C-GCAACCCGCGATCCGGTCTGA
450 CAGCCCGGTCCCCCCTGCGTGCTACCGATCCTACTGTCTGCTGCAACCCTCGATCTGGTCTGA
* *
18957893 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAA-CTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGC-CAAC
* * * * * *
18957957 CCGCGAAACAAGCGTGCAGGCGCTCAGTCGAC-C-AGAGAGGCAGGATGCGCAAGCCGGGGATCG
65 CCACGAAACGAGCGTGCGGGCGCTCAGCCG-CTCGA-AGAGGCAGAATACGCAAGCCGGGGATCG
18958020 A
128 A
18958021 ATGGGTGGTA
Statistics
Matches: 948, Mismatches: 148, Indels: 141
0.77 0.12 0.11
Matches are distributed among these distances:
498 2 0.00
499 125 0.13
500 3 0.00
501 9 0.01
502 108 0.11
503 2 0.00
504 3 0.00
505 4 0.00
506 1 0.00
507 1 0.00
508 6 0.01
509 1 0.00
510 1 0.00
511 22 0.02
513 23 0.02
514 192 0.20
515 8 0.01
516 2 0.00
517 1 0.00
518 5 0.01
520 3 0.00
522 2 0.00
523 2 0.00
525 2 0.00
526 251 0.26
527 9 0.01
529 6 0.01
530 3 0.00
531 3 0.00
532 5 0.01
533 1 0.00
534 1 0.00
535 5 0.01
536 2 0.00
537 3 0.00
538 117 0.12
539 13 0.01
540 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (512 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGCTCGAAGAGGCAGAATACGCAAGCCGGGGATCGACC
CGATTCCCCCCTATGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCCGGTCTAGATCTTAGACT
AGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGACCGAG
AAGGCATAATGCGCAAGCCGGGGATCGGCCTGACCCCCTCTCGTGCTCGTCCGTTGTCGGTCCTG
CTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGCGTACAGGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCC
GGTCCCCCCTGCGTGCTACCGATCCTACTGTCTGCTGCAACCCTCGATCTGGTCTGA
Found at i:18957722 original size:159 final size:153
Alignment explanation
Indices: 18957429--18957920 Score: 357
Period size: 159 Copynumber: 3.1 Consensus size: 153
18957419 TGCTTAGCCA
** ** ** * *
18957429 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGCATTCAGCCGACTGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGA-CGTGCGGGCGCTCAGTAGACCGG
* * * ** * **
18957493 AGAGGCAGAATACGCAAGCCGGGGATC-GACCCGATTCCCCCCTACGTGCTGTCGATCCTACCAC
65 AGAGGCAGAA-GCGCAAGCTGGGGATCAG-CCCG-GT--CCCCTACGTGCTACCGATCCCACTGC
**
18957557 TGCAACCCTCAGTCTGGTCTGATCTTAGAC
125 CACAACCCTC-GTCTGGTCTGATCTTAGAC
* * * * * * *
18957587 TGGGAATGAACTCCGTATGCCTAGGTCAACCTACAAAA-TGAGCGTGCGGGTGCTGAGCTAG-TC
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGA-CGTGCGGGCGCTCAG-TAGACC
* * * * * * *
18957650 GGAGAGGCATAATGCGCAAG-TCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCT
63 GGAGAGGCAGAA-GCGCAAGCT-GGGGATCAGCCCGGT--CCC-CTACGTGCTACCGATCCCACT
* **
18957714 GCCACAACCCTCGGTCT-GACTGGGGCTTAGAC
123 GCCACAACCCTC-GTCTGGTCT-GATCTTAGAC
* * * * *
18957746 ATGGAATGAACGCCCTATGCCTAAGCCAACCCACGAAACGGACGTTCGGGCGCTCAGTCGACCGG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGCGCTCAGTAGACCGG
* * *
18957811 AGAGGCAGAAGCGCAAGCTGGGGATCAGCCCGGTCCCCTACGTGCTACCGATCCTACTGTCGCAA
65 AGAGGCAGAAGCGCAAGCTGGGGATCAGCCCGGTCCCCTACGTGCTACCGATCCCACTGCCACAA
* *
18957876 CCCGCGATCCGGTCTGATCTTAGAC
130 CCCTCG-TCTGGTCTGATCTTAGAC
18957901 TAGGAATGAACTCCGTATGC
1 T-GGAATGAACTCCGTATGC
18957921 TTAGACTAGG
Statistics
Matches: 259, Mismatches: 61, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
154 2 0.01
155 51 0.20
156 6 0.02
158 32 0.12
159 163 0.63
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (153 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGCGCTCAGTAGACCGGA
GAGGCAGAAGCGCAAGCTGGGGATCAGCCCGGTCCCCTACGTGCTACCGATCCCACTGCCACAAC
CCTCGTCTGGTCTGATCTTAGAC
Found at i:18957923 original size:26 final size:26
Alignment explanation
Indices: 18957894--18957946 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18957884 CCGGTCTGAT
18957894 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18957920 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18957946 C
1 C
18957947 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18958638 original size:26 final size:26
Alignment explanation
Indices: 18958600--18958652 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18958590 GGCTCAAAAT
18958600 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18958626 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18958652 C
1 C
18958653 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18959338 original size:26 final size:26
Alignment explanation
Indices: 18959300--18959352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18959290 TCAGTCCAAT
18959300 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18959326 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18959352 C
1 C
18959353 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18959404 original size:196 final size:196
Alignment explanation
Indices: 18959065--18959460 Score: 533
Period size: 196 Copynumber: 2.0 Consensus size: 196
18959055 CCGCTGCGTG
* * *
18959065 CTGCGAGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATTTG
1 CTGCGAGTCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATG
* * *
18959130 CTTAGACTGGGGATGTACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGC
* * * *
18959195 CGGCTGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGCCAATCCT
131 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGCCAATCCT
18959260 A
196 A
* ** * *
18959261 CTGCTAGTCCTGCTGGCGCAACCCTCGGTTCAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
1 CTGCGAGTCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATG
* * * *
18959326 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAG
66 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
* * * * ** * *
18959390 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCAGTCCCCCCTGTGTGCTGTCGATCC
130 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGCCAATCC
18959455 TA
195 TA
18959457 CTGC
1 CTGC
18959461 CACAACCCTC
Statistics
Matches: 172, Mismatches: 27, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
196 171 0.99
197 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (196 bp):
CTGCGAGTCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGCCAATCCT
A
Found at i:18965498 original size:26 final size:26
Alignment explanation
Indices: 18965457--18965509 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18965447 CCGGTCCGAT
18965457 CTTAGACTGGAAATGAACT-TCGTATG
1 CTTAGACTGGAAATGAACTCT-GTATG
**
18965483 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
18965509 C
1 C
18965510 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:18967310 original size:26 final size:26
Alignment explanation
Indices: 18967259--18967311 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18967249 GGCTCAAACT
* *
18967259 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18967285 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18967311 C
1 C
18967312 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18967643 original size:26 final size:26
Alignment explanation
Indices: 18967602--18967654 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18967592 CTGGTTCAAT
* *
18967602 CTTAGACTAGGAATGAGCTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18967628 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18967654 C
1 C
18967655 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18968874 original size:26 final size:26
Alignment explanation
Indices: 18968838--18968890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18968828 CCGGTTCGAT
18968838 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18968864 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18968890 C
1 C
18968891 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18968909 original size:185 final size:184
Alignment explanation
Indices: 18968678--18969247 Score: 522
Period size: 196 Copynumber: 3.0 Consensus size: 184
18968668 TCCGGCTGGG
* * * *
18968678 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGTGCTTAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
18968743 TCGGCCAGAGAGGCAGAATGAGCAAGTCGGGGATCGATTTGGTCCCCCTCTACGTGCTGTCGATC
66 TCGACCAGAGAGGCAGAATGAGCAAGTCGGGGATCGACTTGATCCCCCTCTACGTGCTGTCGATC
*
18968808 CTGCTGTCGCAACCCTCAGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCATAT
131 CTGCTGTCGCAACCCTCAGTCC-GTCT-GATCTTAGACTGGGAATGAACTCCGTAT
* ** * * *
18968863 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTACGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
18968927 GTCGACCAAAGAGGCAGAAT-ACGCAAG-CAGAGGATCGGCTTGATCCCTTCTGGGTGCTATCGA
65 ATCGACCAGAGAGGCAGAATGA-GCAAGTC-GGGGATCGACTTGATCCC--C---CT-CTA-CG-
* * * * * ** * *
18968990 TCCTACTGTTGGTCCTACTGTCGCAAGCCTTGGTTCGATCTGATCTTAGACTGGGAATGAACTCT
120 ---TGCTGTCGATCCTGCTGTCGCAACCCTCAGTCCG-TCTGATCTTAGACTGGGAATGAACTCC
18969055 GTAT
181 GTAT
* * * * *
18969059 GCTCAGACATAGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *** **
18969124 TCGATCGGAGAGGCAAAATGCGCAAGTCGGGGACCGACCCCATCCCCC-CTGTGTGCTGTCGATC
66 TCGACCAGAGAGGCAGAATGAGCAAGTCGGGGATCGACTTGATCCCCCTCTACGTGCTGTCGATC
* *
18969188 CTGCTGCCGCAACCCTCTA-TCTAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 CTGCTGTCGCAACCCTC-AGTC-CGTCTGATCTTAGACTGGGAATGAACTCCGTAT
18969243 GCTTA
1 GCTTA
18969248 AGTCAACCCA
Statistics
Matches: 299, Mismatches: 65, Indels: 43
0.73 0.16 0.11
Matches are distributed among these distances:
184 59 0.20
185 90 0.30
187 1 0.00
188 1 0.00
189 2 0.01
190 1 0.00
191 3 0.01
192 2 0.01
194 1 0.00
195 1 0.00
196 135 0.45
197 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCGACCAGAGAGGCAGAATGAGCAAGTCGGGGATCGACTTGATCCCCCTCTACGTGCTGTCGATC
CTGCTGTCGCAACCCTCAGTCCGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:18969329 original size:158 final size:158
Alignment explanation
Indices: 18969070--18969558 Score: 450
Period size: 159 Copynumber: 3.1 Consensus size: 158
18969060 CTCAGACATA
* * * * ** *
18969070 GAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAATCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGA
* * **
18969135 GGCAAAATGCGCAAGTCGGGGACCGACCCCATCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAA
66 GGCAAAATGCGCAAGCCGAGGACCGACCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAA
18969200 CCCTCTATCTAGTCTGATCTTAGACTGG
131 CCCTCTATCTAGTCTGATCTTAGACTGG
* * * * * *
18969228 GAATGAACTCCGTATGCTTAAGTCAACCCATGAAATGAGCGTTCGAGCACTGAGCCGACCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGA
* ** * *
18969293 GGCATAATGCGCAAGCCGAGGACCGACCCGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCCACA
66 GGCAAAATGCGCAAGCCGAGGACCGACCCGGTCCCCC-CTGTGTGCTGTCGATCCTGCTGCCGCA
* * * * **
18969358 ACCCT-TGGT-TCGGCAGGGGCTTAGACAT-G
130 ACCCTCT-ATCTAGTC-TGATCTTAGAC-TGG
* * * * *
18969387 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGCCGGCTGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGA
* ** * * * * * * **
18969452 GGCAGAATGCATAAGCCGAGGATC-AGCTCGGT-CCCCCTGTATGTTGTAGATCCTGTTATCGCA
66 GGCAAAATGCGCAAGCCGAGGACCGA-CCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCA
* **
18969515 ACCATC-AGTCCGGTCTGATCTTAGACTGG
130 ACCCTCTA-TCTAGTCTGATCTTAGACTGG
*
18969544 GAATGAACTTCGTAT
1 GAATGAACTCCGTAT
18969559 ACTTAGACTA
Statistics
Matches: 258, Mismatches: 64, Indels: 19
0.76 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 44 0.17
158 95 0.37
159 117 0.45
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGA
GGCAAAATGCGCAAGCCGAGGACCGACCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAA
CCCTCTATCTAGTCTGATCTTAGACTGG
Found at i:18969575 original size:26 final size:26
Alignment explanation
Indices: 18969534--18969584 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18969524 CCGGTCTGAT
*
18969534 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
18969560 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
18969585 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:18969944 original size:26 final size:26
Alignment explanation
Indices: 18969915--18969967 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18969905 CCGATCCGAT
18969915 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
18969941 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18969967 C
1 C
18969968 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18970239 original size:159 final size:160
Alignment explanation
Indices: 18969940--18970358 Score: 501
Period size: 159 Copynumber: 2.6 Consensus size: 160
18969930 AACTCCGTAT
* * *
18969940 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGC-GAGCACTTA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGAGCACTCA
* * * * *
18970004 GCCGACCGGAGAGGTAGAATGCACAAG-TCGGGGACCGACCCGGTCCCTCCCTGCGTGCTGTCAA
66 GCCGGCCGGAGAGGCAGAATGCACAAGCT-GGGGATCGACCCGATCCCTCCCTACGTGCTGTCAA
*
18970068 TCCTGCTACCACAACCCTCGATCCGGTCCGG
130 TCCCGCTACCACAACCCTCGATCCGGTCCGG
* * *
18970099 TCTTAGAC-TGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCAG-GCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGAGCACTC
* * * *
18970162 AGCTGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCG-CCTCGATCCC-CCTCTACGTGCTGTC
65 AGCCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACC-CGATCCCTCC-CTACGTGCTGTC
* * * * **
18970225 AGTCCCGCTGCCACAACCCTCGGTCTGGTTGGG
128 AATCCCGCTACCACAACCCTCGATCCGGTCCGG
* * * **
18970258 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGGGCGTGC-GAGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGAGCACTCA
*
18970322 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCG
66 GCCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCG
18970359 GCTTGGTCCG
Statistics
Matches: 219, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
158 6 0.03
159 210 0.96
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGAGCACTCA
GCCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCTCCCTACGTGCTGTCAAT
CCCGCTACCACAACCCTCGATCCGGTCCGG
Found at i:18970407 original size:26 final size:26
Alignment explanation
Indices: 18970371--18970423 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18970361 TTGGTCCGAT
*
18970371 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18970397 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18970423 C
1 C
18970424 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18971124 original size:26 final size:26
Alignment explanation
Indices: 18971086--18971138 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18971076 GGCTCGAACT
*
18971086 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18971112 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18971138 C
1 C
18971139 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18972190 original size:26 final size:26
Alignment explanation
Indices: 18972152--18972204 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18972142 TCGGTCTGAT
18972152 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18972178 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18972204 C
1 C
18972205 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18972521 original size:159 final size:158
Alignment explanation
Indices: 18972334--18972637 Score: 387
Period size: 159 Copynumber: 1.9 Consensus size: 158
18972324 CTGATCTGAT
* * * *
18972334 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGTTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCATTCAGC
* * * * *
18972399 CAGCCGGAAAGGCATAGTGTGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCC
66 CAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTACGTGCTGTCGATCC
*
18972464 CGCTGCCACAACCCTCAGTTCGACTGGGG
130 CACTGCCACAACCCTCAGTTCGACTGGGG
* * *
18972493 CTTAGAC-ATGGAATGAACTTCC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCATTCA
1 CTTAGACTA-GGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCATTCA
* * * * *
18972556 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
64 GCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATC
* *
18972621 CTACTGCCGCAACCCTC
129 CCACTGCCACAACCCTC
18972638 GGTCTGATCC
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
158 29 0.24
159 91 0.74
160 3 0.02
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCATTCAGC
CAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCC
ACTGCCACAACCCTCAGTTCGACTGGGG
Found at i:18972621 original size:511 final size:517
Alignment explanation
Indices: 18971473--18972622 Score: 1218
Period size: 526 Copynumber: 2.2 Consensus size: 517
18971463 GGGATGTACA
* ** * * * * **
18971473 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGTTGAATG
1 CCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCACTCAGCAGGCCGGAGAGGCAGAATG
* * * * * * * * * *
18971538 CGCAAGTC-AGAGATTGACCCGGTCCTCCCTATACATGCTATCGATCCTGCTGCTGGTCCTACTA
66 CGCAAGCCGAG-GATCGGCCCGATCC-CCC-CTACATGCTGTCGATCCTGTTACTGGTCCTGCTG
*** * * *
18971602 CTATAACCCT-TGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAAT
128 CCGCAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAAT
* ** * * *
18971666 GAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGTCAGAGAGGCA
192 GAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTACCAGCGCTCAGCCAGCCAGAGAGGCA
* *
18971731 AAATGCACAAGCCAGCGACCGACCTAGTCCCCCCAAACGTGCTGTCGATCCTACTACCGCAACCC
257 AAATGCACAAGCCAGCGACCGACCTAGTCCCCCCAAACATGCTATCGATCCTACTACCGCAACCC
* * **
18971796 TTGGTCCAGTTCGATCTTAGACTGGGAATGAACACCATATGCCTAAGTCAACCCGTGAAATAACC
322 TTGGTCCAGATCGATCTTAGACTAGGAATGAACACCATATGCCTAAGTCAACCCACGAAATAACC
* ** * * * * * *
18971861 GTTTGGGTACTGAGTCAACTGGAGAGGCATAATGCCAAAGCCAGGGATAAACCTGGTCCCCCTCT
387 ATGCGGGCACTGAGCCAACCGGAAAGGCATAATGCCAAAGCCAGGGATAAACCCGATCCCCCTCT
*
18971926 GCGTGCTGTCGATCCCACTGTCGGTCCTGCTACCACAACTCTCGGTCTGACTGGGGCTTAGACAT
452 GCGTGCTGTCG------C-GTC-G-CCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACAT
18971991 GGAATGAACT
508 GGAATGAACT
* * *
18972001 CCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGAGCGCTCAGCAGGCCGGAGAGGTAGAATG
1 CCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCACTCAGCAGGCCGGAGAGGCAGAATG
* *
18972066 CGCAAGCCGAGGATCGGCCTGATCCCCCCTGCATGCTGTCGATCCTGTTACTGGTCCTGCTGCCG
66 CGCAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTGTTACTGGTCCTGCTGCCG
18972131 CAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
131 CAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
* *
18972196 -TCTATATGCCTAAG-CTAACCCACGAAACGAGCGTGCCAGCGCTCAGCCAGCCAGAGAGGCAGA
196 TTC-ATATGCCTAAGTC-AACCCACGAAACGAGCGTACCAGCGCTCAGCCAGCCAGAGAGGCAAA
* * * ** * ***
18972259 ATGCAC-AGCC-GGGAACCGGCCTGGT-CCCCC-TGCATGCTATC-AGTCCTGCTGTTGCAACCC
259 ATGCACAAGCCAGCG-ACCGACCTAGTCCCCCCAAACATGCTATCGA-TCCTACTACCGCAACCC
* * * * *
18972319 TTGGT-CTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
322 TTGGTCCAGATC-GATCTTAGACTAGGAATGAACACCATATGCCTAAGTCAACCCACGAAATAAC
** * * * * * *
18972383 CATGCGGGCGTTGAGCCAGCCGGAAAGGCATAGTGTGC-AAGCCGGGGATCAGCCCGATCCCCCT
386 CATGCGGGCACTGAGCCAACCGGAAAGGCATAATG-CCAAAGCCAGGGATAAACCCGATCCCCCT
* *
18972447 CTGCGTGCTGTCG-GTC-CC-GCTGCCACAACCCTCAGT-TCGACTGGGGCTTAGACATGGAATG
450 CTGCGTGCTGTCGCGTCGCCTGCTACCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATG
18972508 AACTT
514 AAC-T
* * * * *
18972513 CC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCATTCAGTC-GGTCGGAGAGGCAGAAT
1 CCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCACTCAG-CAGGCCGGAGAGGCAGAAT
* *
18972576 GCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
65 GCGCAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCT
18972623 ACTGCCGCAA
Statistics
Matches: 523, Mismatches: 88, Indels: 39
0.80 0.14 0.06
Matches are distributed among these distances:
510 1 0.00
511 135 0.26
512 6 0.01
515 3 0.01
522 5 0.01
523 128 0.24
524 8 0.02
525 16 0.03
526 141 0.27
527 6 0.01
528 72 0.14
529 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (517 bp):
CCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCACTCAGCAGGCCGGAGAGGCAGAATG
CGCAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTGTTACTGGTCCTGCTGCCG
CAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
TTCATATGCCTAAGTCAACCCACGAAACGAGCGTACCAGCGCTCAGCCAGCCAGAGAGGCAAAAT
GCACAAGCCAGCGACCGACCTAGTCCCCCCAAACATGCTATCGATCCTACTACCGCAACCCTTGG
TCCAGATCGATCTTAGACTAGGAATGAACACCATATGCCTAAGTCAACCCACGAAATAACCATGC
GGGCACTGAGCCAACCGGAAAGGCATAATGCCAAAGCCAGGGATAAACCCGATCCCCCTCTGCGT
GCTGTCGCGTCGCCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACT
Found at i:18973296 original size:11 final size:11
Alignment explanation
Indices: 18973280--18973312 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
18973270 CGGTTAGGCT
18973280 CTCCGGTGATG
1 CTCCGGTGATG
*
18973291 CTCCGGTGATA
1 CTCCGGTGATG
18973302 CTCCGGTGATG
1 CTCCGGTGATG
18973313 GTGCCTCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.27, G:0.33, T:0.27
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:18973731 original size:159 final size:159
Alignment explanation
Indices: 18973408--18973753 Score: 399
Period size: 159 Copynumber: 2.2 Consensus size: 159
18973398 AACTCCGTAT
* *
18973408 GCTTAGATATGGAATGAACTCCGTATGCCTCAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * * * *** * * *
18973473 CTGGCCGGAGAGGCAGAATGTGTTAGCGGGGGATCAGCCTGGTCCCCCTCTGCATGCTATCGGTC
66 CCGACCAGAGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGGTCCCCCCCTGCATGCTATCGATC
* * ***
18973538 CCACTACCACAACCCTCGGTCTGACTGGG
131 CCACTACCACAACCCTCCGTCCGACTCAA
* * * *
18973567 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
*
18973632 CCGACCAGAGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGGTCCCCCCCTGCATGCT-GCTGAT
66 CCGACCAGAGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGGTCCCCCCCTGCATGCTATC-GAT
** * *
18973696 CCTGCTGCCACAACCCTCCGTCCGATTCAA
130 CCCACTACCACAACCCTCCGTCCGACTCAA
* *
18973726 TCTTAG-ATTGGGAATGAACTCCGTATGC
1 GCTTAGAAAT-GGAATGAACTCCGTATGC
18973754 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
158 3 0.02
159 152 0.98
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGACCAGAGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGGTCCCCCCCTGCATGCTATCGATC
CCACTACCACAACCCTCCGTCCGACTCAA
Found at i:18973756 original size:26 final size:26
Alignment explanation
Indices: 18973727--18973779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18973717 CCGATTCAAT
*
18973727 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18973753 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18973779 C
1 C
18973780 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18974288 original size:26 final size:26
Alignment explanation
Indices: 18974252--18974309 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
18974242 CTGGTCTGAT
18974252 CTTAAACTGGGAATAAACTCCATATG
1 CTTAAACTGGGAATAAACTCCATATG
* * * *
18974278 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCATATG
*
18974304 CCTAAA
1 CTTAAA
18974310 TCAACCCACG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCATATG
Found at i:18974645 original size:26 final size:26
Alignment explanation
Indices: 18974608--18974657 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18974598 CCAGTCCAAT
*
18974608 CTTAGACTTGGAATGAACTCCGTACG
1 CTTAGACATGGAATGAACTCCGTACG
18974634 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
18974658 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:18974725 original size:356 final size:355
Alignment explanation
Indices: 18974070--18974726 Score: 818
Period size: 356 Copynumber: 1.8 Consensus size: 355
18974060 AGTCCCACTA
* * * * *
18974070 CCACAACCCTCGGTCCGGCTGGCGGTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCAGCTGGCGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCAAC
* * * * * *
18974135 GAAACGGGCGTGCGGGCGCTCTGCCAGTCGGAGAGGCAGAATGTGCAAGCCGAAGATCAGCCTGG
66 GAAACGAGCGTGCAGGCGCTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGG
* * ** **
18974200 TCCCCCCTATGTGCTACCGATCCTGTTGTCGCAACACTCGATCTGGTCTGATCTTAAACTGGGAA
131 TCCCCCCTATGTGCTACCGATCCTGCTGTCACAACACTCGATCCAGTCCAATCTTAAACTGGGAA
* * * *
18974265 TAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCAT
196 TAAACTCCATACGCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCAT
* * *
18974330 GCGGGCACTCAGTCGGTCGAAGAGGTATAATGTGCAAGCCGGGGATCATCTCGGTCCCCCTGTGT
261 GCGGGCACTCAGTCAGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCATCTCGGTCCCCCTGTGT
18974395 GTGCTGTCGATCCCGCTGCTAGTCCTGCTG
326 GTGCTGTCGATCCCGCTGCTAGTCCTGCTG
* *
18974425 CCACAACCGTCGGTCCAGCTAGG-GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCAA
1 CCACAACCCTCGGTCCAGCT-GGCGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCAA
* * * ** *
18974489 TGAAACGAGCGTGCAGGTGCTCAGTC-GATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
65 CGAAACGAGCGTGCAGGCGCTCAGCCAG-TCGAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCC
* ** * * * * *
18974553 GGTCCCCCTCTGTGTGCTGTCGATCCTGCTGTTACAACCCTCGGTCCAGTCCAATCTTAGACTTG
129 GGTCCCCC-CTATGTGCTACCGATCCTGCTGTCACAACACTCGATCCAGTCCAATCTTAAACTGG
* * * *
18974618 GAATGAACTCCGTACGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGG
193 GAATAAACTCCATACGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGA
* * *
18974682 GCGTGCGGGCACTCTG-CTAGTCGGAGAGGCAGAATGTGCAAGCCG
257 GCATGCGGGCACTCAGTC-AGTCGAAGAGGCAGAATGTGCAAGCCG
18974727 AAGATCAGCC
Statistics
Matches: 250, Mismatches: 47, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
354 1 0.00
355 113 0.45
356 135 0.54
357 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (355 bp):
CCACAACCCTCGGTCCAGCTGGCGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCAAC
GAAACGAGCGTGCAGGCGCTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGG
TCCCCCCTATGTGCTACCGATCCTGCTGTCACAACACTCGATCCAGTCCAATCTTAAACTGGGAA
TAAACTCCATACGCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCAT
GCGGGCACTCAGTCAGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCATCTCGGTCCCCCTGTGT
GTGCTGTCGATCCCGCTGCTAGTCCTGCTG
Found at i:18974766 original size:540 final size:540
Alignment explanation
Indices: 18974095--18975171 Score: 1879
Period size: 540 Copynumber: 2.0 Consensus size: 540
18974085 CGGCTGGCGG
* *
18974095 TTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCTGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCTGCC
18974160 AGTCGGAGAGGCAGAATGTGCAAGCCGAAGATCAGCCTGGTCCCCCCTATGTGCTACCGATCCTG
66 AGTCGGAGAGGCAGAATGTGCAAGCCGAAGATCAGCCTGGTCCCCCCTATGTGCTACCGATCCTG
18974225 TTGTCGCAACACTCGATCTGGTCTGATCTTAAACTGGGAATAAACTCCATATGCTTAGACTGGGG
131 TTGTCGCAACACTCGATCTGGTCTGATCTTAAACTGGGAATAAACTCCATATGCTTAGACTGGGG
*
18974290 ATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCATGCGGGCACTCAGTCGGTCGAAGAGG
196 ATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCATGCGGGCACTCAGCCGGTCGAAGAGG
*
18974355 TATAATGTGCAAGCCGGGGATCATCTCGGTCCCCCTGTGTGTGCTGTCGATCCCGCTGCTAGTCC
261 TATAATGTGAAAGCCGGGGATCATCTCGGTCCCCCTGTGTGTGCTGTCGATCCCGCTGCTAGTCC
18974420 TGCTGCCACAACCGTCGGTCCAGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAA
326 TGCTGCCACAACCGTCGGTCCAGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAA
* * * *
18974485 CCAATGAAACGAGCGTGCAGGTGCTCAGTCGATC-GAAGAGGCAGAATGCGCAAGCCGGGGATCG
391 CCAATGAAACGAGCGTACAGGTGCTCAGCCGATCAG-AGAGGCAGAATGCGCAAGCCGGGGACCA
* * * **
18974549 GCCCGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGTTACAACCCTCGGTCCAGTCCAATCTTAGA
455 GCCCGGTCCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGA
18974614 CTTG-GAATGAACTCCGTACGC
520 C-TGCGAATGAACTCCGTACGC
* *
18974635 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCTGCT
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCTGCC
*
18974700 AGTCGGAGAGGCAGAATGTGCAAGCCGAAGATCAGCCTGGTCCCTCCTATGTGCTACCGATCCTG
66 AGTCGGAGAGGCAGAATGTGCAAGCCGAAGATCAGCCTGGTCCCCCCTATGTGCTACCGATCCTG
18974765 TTGTCGCAACACTCGATCTGGTCTGATCTTAAACTGGGAATAAACTCCATATGCTTAGACTGGGG
131 TTGTCGCAACACTCGATCTGGTCTGATCTTAAACTGGGAATAAACTCCATATGCTTAGACTGGGG
*
18974830 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCACTCAGCCGGTCGAAGAGG
196 ATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCATGCGGGCACTCAGCCGGTCGAAGAGG
18974895 TATAATGTGAAAGCCGGGGATCATCTCGGTCCCCCTGTGTGTGCTGTCGATCCCGCTGCTAGTCC
261 TATAATGTGAAAGCCGGGGATCATCTCGGTCCCCCTGTGTGTGCTGTCGATCCCGCTGCTAGTCC
*
18974960 TGCTGCCACAACCGTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
326 TGCTGCCACAACCGTCGGTCCAGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAA
* * *
18975025 CCCATGAAACGAGCGTACGGGTGCTCAGCCGATCAGAGAGGTAGAATGCGCAAGCCGGGGACCAG
391 CCAATGAAACGAGCGTACAGGTGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGACCAG
* * * * **
18975090 CCCGTTCCCCCCCTGCGTGCTATGGATCCTGCTGCCGCAACCCTTGGTCCAGTCTGATCTTAGAC
456 CCCGGTCCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGAC
18975155 TGCGAATGAACTCCGTA
521 TGCGAATGAACTCCGTA
18975172 TACCTAAGTC
Statistics
Matches: 508, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
539 2 0.00
540 505 0.99
541 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (540 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCTGCC
AGTCGGAGAGGCAGAATGTGCAAGCCGAAGATCAGCCTGGTCCCCCCTATGTGCTACCGATCCTG
TTGTCGCAACACTCGATCTGGTCTGATCTTAAACTGGGAATAAACTCCATATGCTTAGACTGGGG
ATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCATGCGGGCACTCAGCCGGTCGAAGAGG
TATAATGTGAAAGCCGGGGATCATCTCGGTCCCCCTGTGTGTGCTGTCGATCCCGCTGCTAGTCC
TGCTGCCACAACCGTCGGTCCAGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAA
CCAATGAAACGAGCGTACAGGTGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGACCAG
CCCGGTCCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGAC
TGCGAATGAACTCCGTACGC
Found at i:18974828 original size:26 final size:26
Alignment explanation
Indices: 18974792--18974844 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18974782 CTGGTCTGAT
18974792 CTTAAACTGGGAATAAACTCCATATG
1 CTTAAACTGGGAATAAACTCCATATG
* * * *
18974818 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCATATG
18974844 C
1 C
18974845 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCATATG
Found at i:18974857 original size:184 final size:185
Alignment explanation
Indices: 18974448--18974881 Score: 496
Period size: 184 Copynumber: 2.4 Consensus size: 185
18974438 TCCAGCTAGG
* * * * **
18974448 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * * **
18974513 TCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGATC
66 TAGATCGAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTATGTGCTACCGATC
* * * * * * *
18974578 CTGCTGTTACAACCCTCGGTCCAGTCCAATCTTAGACTTGGAATGAACTCCGTAC
131 CTGCTGTCACAACACTCGATCCAGTCCAATCTTAAACTGGGAATAAACTCCATAC
* *
18974633 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
18974698 CTAG-TCGGAGAGGCAGAATGTGCAAGCCGAAGATCAGCCTGGTCCCTC-CTATGTGCTACCGAT
66 -TAGATCGAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTATGTGCTACCGAT
* * ** ** *
18974761 CCTGTTGTCGCAACACTCGATCTGGTCTGATCTTAAACTGGGAATAAACTCCATAT
130 CCTGCTGTCACAACACTCGATCCAGTCCAATCTTAAACTGGGAATAAACTCCATAC
* * * *
18974817 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
18974881 G
65 G
18974882 CCGGTCGAAG
Statistics
Matches: 208, Mismatches: 39, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
183 1 0.00
184 111 0.53
185 94 0.45
186 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TAGATCGAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTATGTGCTACCGATC
CTGCTGTCACAACACTCGATCCAGTCCAATCTTAAACTGGGAATAAACTCCATAC
Found at i:18975258 original size:159 final size:158
Alignment explanation
Indices: 18974957--18975491 Score: 515
Period size: 159 Copynumber: 3.4 Consensus size: 158
18974947 CCGCTGCTAG
* * **
18974957 TCCTGCTGCCACAACCGTCGGTCCAG-CTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 TCCTACTGCCACAACCCTCGGTCCAGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAG
** * * * * * * *
18975021 CCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGATCAGAGAGGTAGAATGCGCAAGCCGGGGA
65 CCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCCGGGGA
* *
18975086 -CCAGCCCGTTCCCCCCCTGCGTGCTATGGA
130 TCGA-CCCGATCCCCCCCTGCGTGCTAT-GA
* * * *
18975116 TCCTGCTGCCGCAACCCTTGGTCCAGTCTGATCTTAGAC-TGCGAATGAACTCCGTATACCTAAG
1 TCCTACTGCCACAACCCTCGGTCCAGTCTGATCTTAGACATG-GAATGAACTCCGTATGCCTAAG
* * * **
18975180 TCAACCCACAAAACGAGCGTGCGGGCGTTGAGTCGACCGGAGAGGCCTAATGCACAAGCCGGGGA
65 CCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCCGGGGA
* * * *
18975245 TCGACCCAATCCCCCTCTGCGTGCTGTCA
130 TCGACCCGATCCCCCCCTGCGTGCTATGA
* * *
18975274 GTCCCACTGCCACAACCCTCGGTCCAGCTTTGA-CTTAGACATGGAATGAACTCCCTATGCCTAA
1 -TCCTACTGCCACAACCCTCGGTCCAG-TCTGATCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * * * * * *
18975338 GCCAACCCACAAAATGGGCGTGCAGTCACTCAGTCGGCCGGAGAGGCAGAATGCCCAAGCCGAGG
64 GCCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCCGGGG
* * *
18975403 ATCGGCCCGAT-CCCCCTTGCGTGCTACCGA
129 ATCGACCCGATCCCCCCCTGCGTGCTA-TGA
** * * ** *
18975433 TCCTACTATCGCAACCCTCGGTCTAGTCCAATCTTAGAC-TGGGAATGAACTCTGTATGC
1 TCCTACTGCCACAACCCTCGGTCCAGTCTGATCTTAGACAT-GGAATGAACTCCGTATGC
18975492 TTAGGCTAGG
Statistics
Matches: 304, Mismatches: 63, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 59 0.19
159 232 0.76
160 10 0.03
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.19
Consensus pattern (158 bp):
TCCTACTGCCACAACCCTCGGTCCAGTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCCGGGGAT
CGACCCGATCCCCCCCTGCGTGCTATGA
Found at i:18976014 original size:12 final size:12
Alignment explanation
Indices: 18975997--18976028 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
18975987 TGAGGCATAG
18975997 GGGGCCAATATA
1 GGGGCCAATATA
18976009 GGGGCCAATATA
1 GGGGCCAATATA
*
18976021 AGGGCCAA
1 GGGGCCAA
18976029 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:18976236 original size:26 final size:25
Alignment explanation
Indices: 18976197--18976248 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
18976187 GGCTCAAACA
18976197 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
18976222 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
18976248 C
1 C
18976249 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:18976739 original size:185 final size:183
Alignment explanation
Indices: 18976380--18976739 Score: 409
Period size: 183 Copynumber: 2.0 Consensus size: 183
18976370 TCTGGCTGGG
* * * * * ** *
18976380 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCAATGAAACGGGCGTGGGGGGCTTAGC
1 GCTTAGACATGGAATAAACTCCCTACGCCTAAGCCAACCAACGAAACGAGCGTGGGGCACTCAGC
* * ** * * *
18976445 CGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTTGCGTGCTGCCTATCCT
66 CGACCGAAGAGGTAGAATAAGCAAGCCGAGGACCAGCCCGATCCCCCTTGCGTGCTGCCGATCCT
* *
18976510 ACTGCCACAACCCTCGGTCCAGTTCAATCATAGATTGGGAATGAACTCCATAT
131 ACTACCACAACCCTCAGTCCAGTTCAATCATAGATTGGGAATGAACTCCATAT
* *
18976563 GCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATAAACTCCCTACGCCTAAGCCAACCAACGAAACGAGCGTG-GGGCACTCAG
* * * * *
18976628 CCGACCGAAGAGGTATAATAAGCAAG-CGAAGGACCGGCTCGATCCCCCTCTGTGTGCTGTCGAT
65 CCGACCGAAGAGGTAGAATAAGCAAGCCG-AGGACCAGCCCGATCCCCCT-TGCGTGCTGCCGAT
* * * * *
18976692 CTTGCTACCACAACCCTCAGTCC-GGTCTGATCTTAGATTGGGAATGAA
128 CCTACTACCACAACCCTCAGTCCAGTTC-AATCATAGATTGGGAATGAA
18976740 ATCTGTATGC
Statistics
Matches: 144, Mismatches: 29, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
183 49 0.34
184 47 0.33
185 48 0.33
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (183 bp):
GCTTAGACATGGAATAAACTCCCTACGCCTAAGCCAACCAACGAAACGAGCGTGGGGCACTCAGC
CGACCGAAGAGGTAGAATAAGCAAGCCGAGGACCAGCCCGATCCCCCTTGCGTGCTGCCGATCCT
ACTACCACAACCCTCAGTCCAGTTCAATCATAGATTGGGAATGAACTCCATAT
Found at i:18976830 original size:342 final size:343
Alignment explanation
Indices: 18976205--18976874 Score: 796
Period size: 342 Copynumber: 2.0 Consensus size: 343
18976195 CACTTAGACT
* * *
18976205 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
1 GGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGA
* * * * ** * * *
18976270 GCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCTATCCCCCT
66 GCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATAAGCAAGCCGAGGACCAGCCCGATCCCCCT
* * * * *
18976335 CTGTGTGTTGTCAGTCTCACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACT
131 CTGTGTGCTGTCAGTCTCACTACCACAACCCTCGATCCGGCTGGAGCTTAGACATGGAATGAAAT
* * ** * ** * * * *
18976400 CCCTATGCCTAAGCCAAGCAATGAAACGGGCGTGGGGGGCTTAGCCGGCCGGAGAGGTAGAATGC
196 CCCTATGCCTAAGCCAACCAACGAAACAAGCGTCGGGCACTGAGACGACCGGAGAGGCAGAATGC
* * *
18976465 GCAAGCCGAGGATCAGCCCGGTCCCCCT-TGCGTGCTGCCTATCCTACTGCCACAACCCTCGGTC
261 ACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCTATCCCACTGCCACAACCCTCGATC
18976529 CAGTTCAATCATAGATTG
326 CAGTTCAATCATAGATTG
18976547 GGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGA
1 GGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGA
* * * *
18976612 GCGTGCGGGCACTCAGCCGACCGAAGAGGTATAATAAGCAAG-CGAAGGACCGGCTCGATCCCCC
66 GCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATAAGCAAGCCG-AGGACCAGCCCGATCCCCC
** * *
18976676 TCTGTGTGCTGTC-GATCTTGCTACCACAACCCTC-AGTCCGGTCT-GATCTTAGA-TTGGGAAT
130 TCTGTGTGCTGTCAG-TCTCACTACCACAACCCTCGA-TCCGG-CTGGAGCTTAGACAT-GGAAT
** * *
18976737 GAAATCTGTATGCCTAAGTCAACCTACGAAACAAGCGTTCGGGCACTGA-ACGACCGGAGAGGCA
191 GAAATCCCTATGCCTAAGCCAACCAACGAAACAAGCG-TCGGGCACTGAGACGACCGGAGAGGCA
* * ** * *
18976801 TAATGCACAAGCCGGGGATGGGCCCGGTCCCCCTCTGCGTGCTGCCTGTCCCGCTGCCACAACCC
255 GAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCTATCCCACTGCCACAACCC
18976866 TCGATCCAG
320 TCGATCCAG
18976875 CTGGGGCTTA
Statistics
Matches: 272, Mismatches: 49, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
341 5 0.02
342 223 0.82
343 44 0.16
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (343 bp):
GGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGA
GCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATAAGCAAGCCGAGGACCAGCCCGATCCCCCT
CTGTGTGCTGTCAGTCTCACTACCACAACCCTCGATCCGGCTGGAGCTTAGACATGGAATGAAAT
CCCTATGCCTAAGCCAACCAACGAAACAAGCGTCGGGCACTGAGACGACCGGAGAGGCAGAATGC
ACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCTATCCCACTGCCACAACCCTCGATC
CAGTTCAATCATAGATTG
Found at i:18977015 original size:158 final size:159
Alignment explanation
Indices: 18976563--18977064 Score: 511
Period size: 158 Copynumber: 3.2 Consensus size: 159
18976553 AACTCCATAT
* *
18976563 GCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCACTCA
* * * ** * * * *
18976627 GCCGACCGAAGAGGTATAATAAGCAAG-CGAAGGACCGGCTCGATCCCCCTCTGTGTGCTGTCGA
65 GACGACCGGAGAGGCATAATGCGCAAGCCG-GGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGA
* *
18976691 TCTTGCTACCACAACCCTC-AGTCCGGTCTGA
129 TCTTGCTGCCACAACCCTCGA-TCCAGTCTGA
* * * * * * * * *
18976722 TCTTAGA-TTGGGAATGAAATCTGTATGCCTAAGTCAACCTACGAAACAAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCA
* * * *
18976786 -ACGACCGGAGAGGCATAATGCACAAGCCGGGGATGGGCCCGGTCCCCCTCTGCGTGCTGCCTG-
65 GACGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTC-GA
** *
18976849 TCCCGCTGCCACAACCCTCGATCCAG-CTGGG
129 TCTTGCTGCCACAACCCTCGATCCAGTCT-GA
* * *
18976880 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
* * *
18976945 TCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGATC
66 ACGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATC
* * *
18977009 TTGCTGCCGCATCCCTCGATCCA-TCTAA
131 TTGCTGCCACAACCCTCGATCCAGTCTGA
* *
18977037 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18977065 TTAGACTAGG
Statistics
Matches: 276, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 27 0.10
158 151 0.55
159 97 0.35
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
ACGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATC
TTGCTGCCACAACCCTCGATCCAGTCTGA
Found at i:18983643 original size:159 final size:157
Alignment explanation
Indices: 18983247--18983647 Score: 405
Period size: 158 Copynumber: 2.5 Consensus size: 157
18983237 AACTCCGTAT
*
18983247 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * *
18983312 -CAGACTGGAGAGGCAGAATGTGCAAGTTGAGGATCGGCCCGGTCCCCCCTATGTGCTATCGATC
66 CCAG-CCGGAGAGGCAGAATACGCAAGTCGACGATCGGCCCGGTCCCCCCTACGTGCTACCAATC
* ** *
18983376 CTGCAGTCGTAACCCTCAGTTCGGTCTAA
130 C-GCACTCACAACCCTCAGTCCGGTCTAA
* * * * * * *
18983405 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCTTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
18983469 ACCGGTCGGAGAGGCATAATACGCAAGTCGACGATCGGCCCGGTCCCCCTCTGCGTGCTACCAAT
65 GCCAGCCGGAGAGGCAGAATACGCAAGTCGACGATCGGCCCGGTCCCCC-CTACGTGCTACCAAT
* **
18983534 CC-CACTACCACAACCCTCGGTCCGG-CTGGG
129 CCGCACT--CACAACCCTCAGTCCGGTCT-AA
* * * * *
18983564 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
18983629 CCAGCCGGATAGGCAGAAT
66 CCAGCCGGAGAGGCAGAAT
18983648 GCACAAGCCA
Statistics
Matches: 191, Mismatches: 45, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 93 0.49
159 93 0.49
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATACGCAAGTCGACGATCGGCCCGGTCCCCCCTACGTGCTACCAATCC
GCACTCACAACCCTCAGTCCGGTCTAA
Found at i:18983752 original size:26 final size:26
Alignment explanation
Indices: 18983723--18983773 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18983713 CCGGTTTGAT
18983723 CTTACACTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATGAACTCCGTATA
* * *
18983749 CTTAGACTGGGGATGAACTTCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
18983774 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATA
Found at i:18984128 original size:26 final size:26
Alignment explanation
Indices: 18984090--18984139 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18984080 CTGGTCTGAT
18984090 CTTAGACTGGGAATGAACCCCGTACG
1 CTTAGACTGGGAATGAACCCCGTACG
*
18984116 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACCCCGTA
18984140 TACCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTACG
Found at i:18984603 original size:158 final size:157
Alignment explanation
Indices: 18984116--18984614 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 157
18984106 ACCCCGTACG
* *
18984116 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAATCGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAA-CGAGCGTGCGGGCACTCAGC
* * ** * * * * *
18984181 CAATCGGAGAGGCAGAATGTGTAAGCCGAGGACCGGCTCGATCCCCCCTGCGTGCTATCGATCCT
65 CGACCGGAGAGGCAGAATGAATAAGTCGAGGATCGGCTCGATCCTCCCTGCGTGCTACCAATCCT
* * *
18984246 GCAGTCGCAACCCTT-GGTCTGGTCCGAT
130 GCTGTCGCAA-CCTTCGGTCCGGTCTGAT
* * ** *
18984274 CTTAGAC-TGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTTAGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCACTCAG
* * *
18984338 CCGACCGGAGAGGCATAAT-AAGTAAGTCGAGGATCGACTCGATCCCTCTCTGCGTGCTACCAAT
64 CCGACCGGAGAGGCAGAATGAA-TAAGTCGAGGATCGGCTCGAT-CCTCCCTGCGTGCTACCAAT
** * * * * **
18984402 CCCACTGCCACAACCCTCGGTCC-GACTAGGG
127 CCTGCTGTCGCAACCTTCGGTCCGGTCT-GAT
* * * * **
18984433 CTT-GACATGGAATTAACTCCCTATGGCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCACTCAGC
* * * * *
18984497 CGACCGGATAGGCAGAATGCATAAGTCGGGGATCGGC-CTGGTCCTCCCTGCATGCTACCAATCC
65 CGACCGGAGAGGCAGAATGAATAAGTCGAGGATCGGCTC-GATCCTCCCTGCGTGCTACCAATCC
*
18984561 TGCTGTCGCAACTTTCGGTCCGGTCTGAT
129 TGCTGTCGCAACCTTCGGTCCGGTCTGAT
18984590 CTTAGAC-TGGGAATGAACTCCGTAT
1 CTTAGACAT-GGAATGAACTCCGTAT
18984615 ACTTAGACTG
Statistics
Matches: 268, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 42 0.16
158 189 0.71
159 37 0.14
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAACGAGCGTGCGGGCACTCAGCC
GACCGGAGAGGCAGAATGAATAAGTCGAGGATCGGCTCGATCCTCCCTGCGTGCTACCAATCCTG
CTGTCGCAACCTTCGGTCCGGTCTGAT
Found at i:18984619 original size:26 final size:26
Alignment explanation
Indices: 18984590--18984640 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18984580 CCGGTCTGAT
18984590 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
18984616 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18984641 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:18985027 original size:879 final size:866
Alignment explanation
Indices: 18983051--18985125 Score: 2687
Period size: 868 Copynumber: 2.4 Consensus size: 866
18983041 AACTCCGTAT
* * *
18983051 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * *
18983115 ATCGATCGGAGAGGTAGAATGCACAAGCTGGGGATCGGCCTGGTCCCCACTACGTGCTGTCGATC
65 GTCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCACTGCGTGCTGTCGATC
* * * * *
18983180 CTGCTGCTGGTCCTGCTGCCGCAACCCTCAATCCAATCCGATCTTAGAGT-AGGAATGAACTCCG
130 CTGCTGCTGGTCCTGCTGCCGCAACCCTTAGTTCAGTCCGATCTTAGACTGA-GAATGAACTCCG
18983244 TATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
194 TATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCAC-AAACGAGCGTGCGGGCGCT
* ** * **
18983309 CAG-CAGACTGGAGAGGCAGAATGTGCAAGTTGAGGATCGGCCCGGTCCCCCCTATGTGCTATCG
258 CAGCCA-AC-GGAGAGGCAGAATGTGTAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTATCG
* *
18983373 ATCCTGCAGTCGTAACCCTCAGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
321 ATCCTGCAGTCGCAACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** *
18983438 TCAACCCACGGAACGAGCTTTCGGGCACTGAACCGGTCGGAGAGGCATAATACGCAAGTCGACGA
386 TCAACCCACGAAACGAGCGTTAGGGCACTGAACCGACCGGAGAGGCATAATAAGCAAGTCGACGA
* * * *
18983503 TCGGCCCGGTCCCCCTCTGCGTGCTACCAATCCCACTACCACAACCCTCGGTCCGGCTGGGGCTT
451 TCGACCCGATCCCCCTCTGCGTGCTACCAATCCCACTACCACAACCCTCGGTCCGACTAGGGCTT
*
18983568 AGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGCCAG
516 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGCCAG
* * ** * *
18983633 CCGGATAGGCAGAATGCACAAGCCAGGGATCGATCCGATCCTCCCTACGTGCTGTCGATCTTGCT
581 CCGGATAGGCAGAATGCACAAGCCAGGGATCGAGCCGATCCTCCCTACATGCTACCAATCCTGCT
*
18983698 ATCGCAACCCTTGGTCCGGTTTGATCTTACACTGGGAATGAACTCCGTATACTTAGACTGGGGAT
646 ATCGCAACCCTTGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATACTTAGACTGGGGAT
* * *
18983763 GAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGTTCAGTTGGCCGAAGAGGCA
711 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCCTTCAGTCGGCCGAAGAGGCA
* * * * * *
18983828 TAATGCGAAAGCCGGGGATCAGTCCGATCCCCCTCTACGTGTTGCTGATCCCGCTGCAGGTCCTG
776 TAATGCGAAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCCACTCCAGGTCCTG
* *
18983893 CTGCCACAACCCTCGATCCTGTTGGG
841 CTGCCACAACCCTCGATCCGGCTGGG
* *
18983919 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
18983984 -CTGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATC
66 TC-GATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCACTGCGTGCTGTCGATC
* * * * * *
18984048 CTGCTGCTGGTCCTGCTGCCGCAA-CCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCCCG
130 CTGCTGCTGGTCCTGCTGCCGCAACCCTTAGTTC-AGTCCGATCTTAGACTGAGAATGAACTCCG
* *
18984112 TACGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAATCGAGCGTGCGGGCACT
194 TATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAA-CGAGCGTGCGGGCGCT
* *
18984177 CAGCCAATCGGAGAGGCAGAATGTGTAAGCCGAGGACCGGCTCGATCCCCCCTGCGTGCTATCGA
258 CAGCCAA-CGGAGAGGCAGAATGTGTAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTATCGA
* * * *
18984242 TCCTGCAGTCGCAACCCT-TGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTATG
322 TCCTGCAGTCGCAACCCTCAGTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
18984306 TCAACCCACGAAACGAGCGTTAGGGCACTGAGCCGACCGGAGAGGCATAATAAGTAAGTCGAGGA
386 TCAACCCACGAAACGAGCGTTAGGGCACTGAACCGACCGGAGAGGCATAATAAGCAAGTCGACGA
* * *
18984371 TCGACTCGATCCCTCTCTGCGTGCTACCAATCCCACTGCCACAACCCTCGGTCCGACTAGGGCTT
451 TCGACCCGATCCCCCTCTGCGTGCTACCAATCCCACTACCACAACCCTCGGTCCGACTAGGGCTT
* * **
18984436 -GACATGGAATTAACTCCCTATGGCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCC-G
516 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGCCAG
* * * * *
18984499 ACCGGATAGGCAGAATGCATAAGTCGGGGATCG-GCCTGGTCCTCCCTGCATGCTACCAATCCTG
581 -CCGGATAGGCAGAATGCACAAGCCAGGGATCGAGCC-GATCCTCCCTACATGCTACCAATCCTG
* * *
18984563 CTGTCGCAA-CTTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGG
644 CTATCGCAACCCTT-GGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATACTTAGACTGGG
* *
18984627 GATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTTAACCTACCGAAATG
708 GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGC-CTT---C-A--G---T-
* * * ** * **
18984692 CCGGTCGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGGTCCCTTTTTTTGTGCTGCCGATC
762 -CGGCCGAAGAGGCATAATGCGAAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATC
**
18984757 CCACTACCA-GTCCTGCTGCCACAACTTTCGATCCGGCTGGG
826 CCACT-CCAGGTCCTGCTGCCACAACCCTCGATCCGGCTGGG
*
18984798 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
18984863 TCAATCGGAGAGGTAGAATGCGCAAGCAGGGGATCAGTCTGATCCCCTCTGCGTGCTGTCGATCC
66 TCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCACTGCGTGCTGTCGATCC
* ** *
18984928 TACTGCTGGTCCTGCTGCCATAACCCTTAGTTCAGTCCGATCTTAGACTGAGATTGAACTCCGTA
131 TGCTGCTGGTCCTGCTGCCGCAACCCTTAGTTCAGTCCGATCTTAGACTGAGAATGAACTCCGTA
* ** * * * * * *
18984993 TACTTAGACATGGAATGAACTTTGTATGCCTAAGCTAACCCATGAAACAAGAGTGCGGGTGCTCA
196 TGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCA-CAAACGAGCGTGCGGGCGCTCA
* * ** * * * *
18985058 GCCGACCGGAGAGGCAGAGTGCATAAGCCGATGATTGGCTCGGTCCCCCCCTGCGTGCTGTTGAT
260 GCC-AACGGAGAGGCAGAATGTGTAAGCCGAGGATCGGCTCGGT-CCCCCCTGCGTGCTATCGAT
18985123 CCT
323 CCT
18985126 ACTACTGGTC
Statistics
Matches: 1039, Mismatches: 139, Indels: 46
0.85 0.11 0.04
Matches are distributed among these distances:
866 6 0.01
867 217 0.21
868 441 0.42
869 4 0.00
871 1 0.00
872 1 0.00
874 1 0.00
877 1 0.00
879 332 0.32
880 35 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (866 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCACTGCGTGCTGTCGATCC
TGCTGCTGGTCCTGCTGCCGCAACCCTTAGTTCAGTCCGATCTTAGACTGAGAATGAACTCCGTA
TGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAACGAGCGTGCGGGCGCTCAG
CCAACGGAGAGGCAGAATGTGTAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTATCGATCCT
GCAGTCGCAACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTTAGGGCACTGAACCGACCGGAGAGGCATAATAAGCAAGTCGACGATCGAC
CCGATCCCCCTCTGCGTGCTACCAATCCCACTACCACAACCCTCGGTCCGACTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGCCAGCCGGA
TAGGCAGAATGCACAAGCCAGGGATCGAGCCGATCCTCCCTACATGCTACCAATCCTGCTATCGC
AACCCTTGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATACTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCCTTCAGTCGGCCGAAGAGGCATAATG
CGAAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCCACTCCAGGTCCTGCTGCC
ACAACCCTCGATCCGGCTGGG
Found at i:18985216 original size:26 final size:26
Alignment explanation
Indices: 18985166--18985218 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18985156 CTGATCTGAT
* **
18985166 CTTAGACAGGGAATGAACTTTGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
*
18985192 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
18985218 C
1 C
18985219 CCAAGCCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGTATG
Found at i:18985366 original size:196 final size:196
Alignment explanation
Indices: 18984798--18985713 Score: 667
Period size: 196 Copynumber: 4.7 Consensus size: 196
18984788 TCCGGCTGGG
* * * * *
18984798 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * * * * * * * * * * *
18984863 TCA-ATCGGAGAGGTAGAATGCGCAAGCAGGGGATC-AGTCTGATCCCCTCTGCGTGCTGTCGAT
66 CCAGCT-GAAGAGGCAAAACGCGTAAGCTGAGGAACGA-CCCGGTCCCCCCTGCGTGCTGTCGAT
* * ** * * * * * * * *
18984926 CCTACTGCTGGTCCTGCTGCCATAACCCT-TAGTTCAGTCCGATCTTAGACTGAGATTGAACTCC
129 CCTACTACTGGTCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACAGGGAATGAACTCT
18984990 GTAT
193 GTAT
* * ** * ** * * * *
18984994 ACTTAGACATGGAATGAACTTTGTATGCCTAAGCTAACCCATGAAACAAGAGTGCGGGTGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * ** * * * ** * * *
18985059 CC-GACCGGAGAGGCAGAGTGCATAAGCCGATGATTGGCTCGGTCCCCCCCTGCGTGCTGTTGAT
66 CCAG-CTGAAGAGGCAAAACGCGTAAGCTGAGGAACGACCCGGT-CCCCCCTGCGTGCTGTCGAT
* * * *
18985123 CCTACTACTGGTCCTACTACCGCAACCCTCGATCTGATCTGATCTTAGACAGGGAATGAACTTTG
129 CCTACTACTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACAGGGAATGAACTCTG
18985188 TAT
194 TAT
* *
18985191 GCTTAGACATGGAATAAACTCCGTATGCCCAAGCCTACCCACAAAACGAGCGTACGGGCGCTC-G
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * * *
18985255 CTC-GATTGAAGAGGTAAAACGTGTAAGCTGGGGAATGACCCGGTCCCCCCTGCGTGCTATCGAT
66 C-CAG-CTGAAGAGGCAAAACGCGTAAGCTGAGGAACGACCCGGTCCCCCCTGCGTGCTGTCGAT
* * * ** * *
18985319 CCTGCTACTGGTCTTGCTACCGCTACCCTTAATCCGGTCTGATCTTAGATTA-GGAATGAACTCC
129 CCTACTACTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGA-CAGGGAATGAACTCT
*
18985383 ATAT
193 GTAT
* *
18985387 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * ** * * * * *
18985452 CCAGCTGAAGAGGCAGAATGCGTAAGCTGAGGACCGGTCTGATCCCCCCTACGTGCTGCCTATCC
66 CCAGCTGAAGAGGCAAAACGCGTAAGCTGAGGAACGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* ** * * * * * *
18985517 TTCTGTTGGTCCTGCTATCGCAACCCTCGGTTCGGCCCGATCTTAGACTGGGAATGAACTCTGTA
131 TACTACTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACAGGGAATGAACTCTGTA
18985582 T
196 T
* ** * * *
18985583 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATTCGGGCGCTGAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * *** * * ** * *
18985648 CCAACCGGAGAGGCATAATAAGTAAGCAGGGGATTGGCCCGGTCCCCCTCTGTGTGCTGTCGATC
66 CCAGCTGAAGAGGCAAAACGCGTAAGCTGAGGAACGACCCGGTCCCCC-CTGCGTGCTGTCGATC
18985713 C
130 C
18985714 CGCTGCCACA
Statistics
Matches: 565, Mismatches: 144, Indels: 21
0.77 0.20 0.03
Matches are distributed among these distances:
196 402 0.71
197 162 0.29
198 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (196 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
CCAGCTGAAGAGGCAAAACGCGTAAGCTGAGGAACGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TACTACTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACAGGGAATGAACTCTGTA
T
Found at i:18985596 original size:26 final size:26
Alignment explanation
Indices: 18985558--18985610 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18985548 TCGGCCCGAT
*
18985558 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18985584 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
18985610 C
1 C
18985611 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18985927 original size:158 final size:159
Alignment explanation
Indices: 18985583--18985927 Score: 419
Period size: 159 Copynumber: 2.2 Consensus size: 159
18985573 AACTCTGTAT
* *
18985583 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATTCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATTCGGGCGCTCAG
* * * * *
18985648 CCAACCGGAGAGGCATAATAAGTAAGCAGGGGATTGGCCCGGTCCCCCTCTGTGTGCTGTCGATC
66 CCAACCGGAGAGGCAGAATAAGCAAGCAGGGGATAGACCCGGTCCCCCTCTGCGTGCTGTCGATC
* *
18985713 CCGCTGCCACAACCCTCGGTCTGACTGGG
131 CCGCTGCCACAACCCTCGGTCTGACTCGA
* * * *
18985742 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC-TTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATT-CGGGCGCTCA
* * * ** * *
18985806 GTCAGCCTGAGAGGCAGAATGCGCAAGCCGGGGATAGACCCGGT-CCCCTCTGCGTGCTTTCGAT
65 GCCAACCGGAGAGGCAGAATAAGCAAGCAGGGGATAGACCCGGTCCCCCTCTGCGTGCTGTCGAT
* * *
18985870 CCTGCTGTCACAACCTTCGGTCTGA-TCCGA
130 CCCGCTGCCACAACCCTCGGTCTGACT-CGA
*
18985900 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18985928 TTAGACTAGG
Statistics
Matches: 157, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 66 0.42
159 89 0.57
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATTCGGGCGCTCAG
CCAACCGGAGAGGCAGAATAAGCAAGCAGGGGATAGACCCGGTCCCCCTCTGCGTGCTGTCGATC
CCGCTGCCACAACCCTCGGTCTGACTCGA
Found at i:18985930 original size:26 final size:26
Alignment explanation
Indices: 18985901--18985953 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18985891 CTGATCCGAT
18985901 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
18985927 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
18985953 C
1 C
18985954 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:18986674 original size:26 final size:26
Alignment explanation
Indices: 18986623--18986675 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18986613 GGCTCAAACT
** **
18986623 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCATATG
18986649 CTTAGACAAGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
18986675 C
1 C
18986676 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:18987002 original size:159 final size:157
Alignment explanation
Indices: 18986648--18987023 Score: 364
Period size: 159 Copynumber: 2.4 Consensus size: 157
18986638 AACTCTGTAT
* * *
18986648 GCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGATAAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
* * * * *
18986713 TCAGTCGAAAAGGTAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCTGTGTGTTGTCGATCCT
66 CCAGCCGAAAAGGCAGAATGAGCAAGCCGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCCT
** **
18986778 GCTGCCGTAACCCTTGGTTCGGTCCAA
131 GCTGCCACAACCCTCAGTTCGGTCCAA
* * * ** * * *
18986805 TCTTAGACT-GGGAATGAACTCCGTATGCAAAAGTCAACCCACAAAATGAGC-TGGCGGGTGCTG
1 GCTTAGA-TAAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGT-GCGGGCGCTG
* * *
18986868 AGCCTA-CCGAAGAGGCATAATGAGCAAGCCGAGGATTGGCCCGATCCCCCTCTGTGTGCTGTCG
64 AGCC-AGCCGAAAAGGCAGAATGAGCAAGCCG-GGATCGGCCCGATCCCCC-CTGTGTGCTGTCG
* ****
18986932 GTCCTGCTGCCACAACCCTCAG-TCTGGTTGGG
126 ATCCTGCTGCCACAACCCTCAGTTC-GGTCCAA
* * * * * *
18986964 GCTTAGATATGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAACGGGCGTACGGGCG
1 GCTTAGATAAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCG
18987024 TACGGCGCTC
Statistics
Matches: 171, Mismatches: 40, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.01
157 72 0.42
158 21 0.12
159 76 0.44
160 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGATAAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
CCAGCCGAAAAGGCAGAATGAGCAAGCCGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCCT
GCTGCCACAACCCTCAGTTCGGTCCAA
Found at i:18987171 original size:26 final size:26
Alignment explanation
Indices: 18987130--18987182 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18987120 CTGATCCGAT
*
18987130 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18987156 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
18987182 C
1 C
18987183 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18987681 original size:166 final size:169
Alignment explanation
Indices: 18987289--18987688 Score: 463
Period size: 169 Copynumber: 2.4 Consensus size: 169
18987279 CTGATCTCGC
* * * *
18987289 TGCCGGTCTTGCTGCCACAACCCTCGGTCTGGTTAGGGCTTAGACATGGAATGTACTCCGTATGC
1 TGCCGGTCCTGCTACCACAACCCTCGGTCTGGTTAGGGCTTAGACATGGAATGAACTCTGTATGC
* * ** * * *
18987354 CTAAGCCAACCCACGAAATGAGCGTGTGGGTGCTCAACCGATCGAGAAGGCAGAATGTGCAAGCT
66 CTAAGCCAACCCACAAAATGAGCATGCAGGCGCTCAACCAATCGAGAAGGCAGAATGCGCAAGCT
18987419 GAGGATCGGCTCGACCCCCCTCTACGTGCTCGATCCCGT
131 GAGGATCGGCTCGACCCCCCTCTACGTGCTCGATCCCGT
* * ** *
18987458 TGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGC
1 TGCCGGTCCTGCTACCACAACCCTCGGTCTGGTTAGGGCTTAGACATGGAATGAACTCTGTATGC
*
18987523 CTAAGCCAACCCACAAAATGAGCATGCAGGCGCTC-ACCAATCGA-AGAGGCAGAATGCGCATGC
66 CTAAGCCAACCCACAAAATGAGCATGCAGGCGCTCAACCAATCGAGA-AGGCAGAATGCGCAAGC
* * * * *
18987586 -GGGGATCGGTTCGA-TCCCC-CTGCGTGCTGTCGATCCTGT
130 TGAGGATCGGCTCGACCCCCCTCTACGTGC--TCGATCCCGT
* * * * **
18987625 TGCTGGT-CTGCTACTACAACCCTCGATCTGGTTTGATCTTAGAC-TGGGAATGAACTCTGTATG
1 TGCCGGTCCTGCTACCACAACCCTCGGTCTGGTTAGGGCTTAGACAT-GGAATGAACTCTGTATG
18987688 C
65 C
18987689 TTAGCCATGG
Statistics
Matches: 197, Mismatches: 30, Indels: 11
0.83 0.13 0.05
Matches are distributed among these distances:
165 8 0.04
166 50 0.25
167 28 0.14
168 23 0.12
169 88 0.45
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (169 bp):
TGCCGGTCCTGCTACCACAACCCTCGGTCTGGTTAGGGCTTAGACATGGAATGAACTCTGTATGC
CTAAGCCAACCCACAAAATGAGCATGCAGGCGCTCAACCAATCGAGAAGGCAGAATGCGCAAGCT
GAGGATCGGCTCGACCCCCCTCTACGTGCTCGATCCCGT
Found at i:18987691 original size:26 final size:27
Alignment explanation
Indices: 18987662--18987715 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
18987652 CTGGTTTGAT
* *
18987662 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACATGGAAATGAACTCCGTATG
*
18987688 CTTAGCCATGGAAATGAACTCCGTATG
1 CTTAGACATGGAAATGAACTCCGTATG
18987715 C
1 C
18987716 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACATGGAAATGAACTCCGTATG
Found at i:18988239 original size:28 final size:32
Alignment explanation
Indices: 18988188--18988245 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 32
18988178 CGGGTCTGAT
18988188 CTTAGAACTAGCGGAATGAAACTCCGTATGAG
1 CTTAGAACTAGCGGAATGAAACTCCGTATGAG
18988220 CTTAG-ACTAG-GG-ATG-AACTCCGTATG
1 CTTAGAACTAGCGGAATGAAACTCCGTATG
18988246 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 11 0.42
29 3 0.12
30 2 0.08
31 5 0.19
32 5 0.19
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (32 bp):
CTTAGAACTAGCGGAATGAAACTCCGTATGAG
Found at i:18990740 original size:158 final size:159
Alignment explanation
Indices: 18990389--18990756 Score: 354
Period size: 158 Copynumber: 2.3 Consensus size: 159
18990379 TTTTGCTAAT
* * * * * *
18990389 GCAACCCTCGATCCGGTCCGATCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCACGA
* * * * * * *
18990454 AACGAGCGTACGGGCACTGAGCCAACCGGAGAGGCATAATGCATAAGACGGGGATTGGCCTGGTC
66 AACGAGCGTACGGGCACTCAGCCAACCAGAGAGGCAGAATGCACAAGACAGGGATCGGCCTGATC
18990519 CCCCTCTACGTGCTGCCAGTCCCGCTACC
131 CCCCTCTACGTGCTGCCAGTCCCGCTACC
* * * ** *
18990548 ACAACCCTTGGTCC-GACTGGGGCTT-GACAT-GGAATGAACTCCCTATGCTTAAGCCAACCCAC
1 GCAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCTTAAGCCAACCCAC
* * ** *** * *
18990610 GAAACGGGCGTGCGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGG-CTCG
64 GAAACGAGCGTACGGGCACTCAGCCAACCAGAGAGGCAGAATGCACAAGACAGGGATCGGCCT-G
* * *
18990674 ATCCCCC-CTGCGTGCTGTC-GATCCTGC-AGCC
128 ATCCCCCTCTACGTGCTGCCAG-TCCCGCTA-CC
*
18990705 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTA
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
18990757 GACTGGGGAT
Statistics
Matches: 163, Mismatches: 38, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 36 0.22
158 109 0.67
159 16 0.10
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCACGA
AACGAGCGTACGGGCACTCAGCCAACCAGAGAGGCAGAATGCACAAGACAGGGATCGGCCTGATC
CCCCTCTACGTGCTGCCAGTCCCGCTACC
Found at i:18990756 original size:26 final size:26
Alignment explanation
Indices: 18990727--18990779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18990717 CCGGTCTGAT
*
18990727 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18990753 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18990779 C
1 C
18990780 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18991482 original size:26 final size:26
Alignment explanation
Indices: 18991431--18991483 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18991421 GGCTCAAAAT
**
18991431 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18991457 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18991483 C
1 C
18991484 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18992303 original size:171 final size:170
Alignment explanation
Indices: 18991954--18992323 Score: 392
Period size: 171 Copynumber: 2.2 Consensus size: 170
18991944 GAACTTGTAT
* * * *
18991954 GCTTAGATTGGAGATGAACTCCATATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAC
1 GCTTAGACTGGA-ATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATGCGGGCGCTCAC
* * * *
18992019 CCAGCCAAAGAGGCATAATGCACAAGTCGGGGATCAACCCGATCCCCCTCTGTATGTAGCCAATC
65 CCAGCCAAAGAGACAGAATGCACAAGTCGGAGATCAACCCGATCCCCCTCTGCATGTAGCCAATC
*
18992084 CCACTGCTGGTCATGCTACCACAACCCTCGGTCTGGCTAGG
130 CCACTGCTGGTCATGCTACCACAACCCTCGGTCTGGCTAGA
*
18992125 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAGCC-ACGAAACGAGCATGCGGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAA-CCTACGAAACGAGCATGCGGGCGCTCA
* ** * * *
18992189 GCC-GGTAGGAGAGACAGAATGCACAAGTCGGAGATCGACCCGATCACCCC-CTGCGTGCTA-CC
64 CCCAGCCA-AAGAGACAGAATGCACAAGTCGGAGATCAACCCGATC-CCCCTCTGCATG-TAGCC
* ** ** * * *
18992251 GATCCTGCTGCTGGT-ACTGCTACTGCAACCCTTGGTCT-GATCCGA
126 AATCCCACTGCTGGTCA-TGCTACCACAACCCTCGGTCTGGCT-AGA
*
18992296 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
18992324 TTAGACATGG
Statistics
Matches: 165, Mismatches: 26, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
170 6 0.04
171 147 0.89
172 12 0.07
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATGCGGGCGCTCACC
CAGCCAAAGAGACAGAATGCACAAGTCGGAGATCAACCCGATCCCCCTCTGCATGTAGCCAATCC
CACTGCTGGTCATGCTACCACAACCCTCGGTCTGGCTAGA
Found at i:18992326 original size:26 final size:26
Alignment explanation
Indices: 18992297--18992349 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18992287 CTGATCCGAT
18992297 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
18992323 CTTAGACATGGAATGACCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
18992349 C
1 C
18992350 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:18992621 original size:158 final size:158
Alignment explanation
Indices: 18992322--18992624 Score: 376
Period size: 158 Copynumber: 1.9 Consensus size: 158
18992312 AACTCCGTAT
* * * * * *
18992322 GCTTAGACATGGAATGACCTCCGTATGCCTAAGTCAACCCACAGACGAGCGTACGGGCGTTGAGC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACAAACGAGCGTACGGGCGTTCAAC
* * * * * **
18992387 CGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCTCTCTGTGTGCTACCGATCT
66 CGGACGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCTCCCTACGTGCTACCGATCT
*
18992452 CGCTGCCACAACCCTTGGTCCAGCTGGG
131 CACTGCCACAACCCTTGGTCCAGCTGGG
* * *
18992480 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCATGAAACGGGCGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCA-CAAACGAGCGTACGGGCGTTCAA
* * * *
18992545 CTGGACGGAGAGGCAAAATGCGCAAGCCGGGGATCGATCCGATCCC-CCCTACGTGCTGCTGATC
65 CCGGACGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCTCCCTACGTGCTACCGATC
*
18992609 -CTACTGTCACAACCCT
130 TC-ACTGCCACAACCCT
18992625 CGATCCGATC
Statistics
Matches: 121, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
157 1 0.01
158 63 0.52
159 57 0.47
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACAAACGAGCGTACGGGCGTTCAAC
CGGACGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCTCCCTACGTGCTACCGATCT
CACTGCCACAACCCTTGGTCCAGCTGGG
Found at i:18993389 original size:26 final size:25
Alignment explanation
Indices: 18993350--18993401 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18993340 GGCTCAAAAT
18993350 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
18993375 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
18993401 C
1 C
18993402 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:18993679 original size:159 final size:157
Alignment explanation
Indices: 18993514--18993877 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 157
18993504 CTGCTACCGT
* * *
18993514 AACCCTCCGTCTGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCATAAGTCAACCCAAGAAA
1 AACCCTCAGTCTGGTCTGATCTTAGACTG-GAATGAACTCCATATGCATAAGCCAACCCAAGAAA
* * * ** * * * *
18993579 CGAGCGTGCGGGTGCAGAGCCGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCC
65 CGAGCGTGCGGGCGCACAACCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCC
*
18993644 CTTCTGCGTACT-GCC-AGTCCCACTGCCAC
130 C-CCTGCGT-CTGGCCGA-TCCCACTGCCAC
* * ** * * * *
18993673 AACCCTCAGTC-CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAA
1 AACCCTCAGTCTGGTCT-GATCTTAGAC-TGGAATGAACTCCATATGCATAAGCCAACCCAAGAA
* * *
18993737 ACGGGCGTGCGGGCGCTCAATCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCC
64 ACGAGCGTGCGGGCGCACAACCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCC
* * *
18993802 CCCCTGCGTGTGGCCGATCCTACTGCCGC
129 CCCCTGCGTCTGGCCGATCCCACTGCCAC
* *
18993831 AACCTTCAGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
1 AACCCTCAGTCT-GGTCTGATCTTAGACT-GGAATGAACTCCATATGC
18993878 TTAGACATGG
Statistics
Matches: 165, Mismatches: 33, Indels: 15
0.77 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 56 0.34
159 105 0.64
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
AACCCTCAGTCTGGTCTGATCTTAGACTGGAATGAACTCCATATGCATAAGCCAACCCAAGAAAC
GAGCGTGCGGGCGCACAACCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCC
CCTGCGTCTGGCCGATCCCACTGCCAC
Found at i:18993889 original size:26 final size:26
Alignment explanation
Indices: 18993851--18993903 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18993841 TCGGTCCGAT
18993851 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18993877 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
18993903 C
1 C
18993904 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18994018 original size:184 final size:184
Alignment explanation
Indices: 18993692--18994061 Score: 487
Period size: 184 Copynumber: 2.0 Consensus size: 184
18993682 TCCGACTGGG
* *
18993692 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
*
18993757 TCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGTGGCCGATCC
66 TCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTCTGGCCGATCC
* * * *
18993822 TACTGCCGCAACCTTC-AGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
131 TACTGCCGCAACCCTCGA-TCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
*
18993876 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGG-GCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGCGCTCA
* * ** * * ** * **
18993940 GTCGGCCGGAGAGGCAGAATGCGCAAGTTGGGGA-CCGTCTTGGTCCCCCCTGCGTCCT-GTTGA
65 ATCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAG-CCCGATCCCCCCTGCGT-CTGGCCGA
* *
18994003 TCCTGCTGTCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
128 TCCTACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
18994060 GC
1 GC
18994062 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
183 2 0.01
184 154 0.96
185 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
TCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTCTGGCCGATCC
TACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:18994148 original size:162 final size:159
Alignment explanation
Indices: 18993877--18994282 Score: 414
Period size: 162 Copynumber: 2.5 Consensus size: 159
18993867 ACTCCATATG
* * * *
18993877 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGGGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCCTACAGGGGCTCAGC
* * * *
18993942 CGGCCGGAGAGGCAGAATGCGCAAGTTGGGGACCGTCTTGGTCCCCC-CTGCGTCCTGTTGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACTTGGTCCCCCTCTGCGTCCTGTCGATCC
18994006 TGCTGTCGCAACCCTCGATCCAGTCCAAT
131 TGCTGTCGCAACCCTCGATCCAGTCCAAT
18994035 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCAACCCATGAAACGAGCCTAC-GGGTG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAG----CCAACCCATGAAACGAGCCTACAGGG-G
* * *
18994098 CTGAGCCGACCGGAGAGGC-GTAATGCGCAAGTCGGGGATCGGAC-TGGTCCCCCTCTGCGTGCT
60 CTCAGCCGACCGGAGAGGCAG-AATGCGCAAGTCGGGGA-CCGACTTGGTCCCCCTCTGCGTCCT
* ** ** * * * ****
18994161 GTCGATCCCGCTACCATAATCCTCGGTCC-GGCTGGGG
123 GTCGATCCTGCTGTCGCAACCCTCGATCCAGTC-CAAT
* * *
18994198 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GGCGAGC-GGGCGCTCA
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCCTA-CAGGG-GCTCA
*
18994261 GCCGACCGGAGAGGTAGAATGC
64 GCCGACCGGAGAGGCAGAATGC
18994283 ATAAGCCGGG
Statistics
Matches: 206, Mismatches: 29, Indels: 25
0.79 0.11 0.10
Matches are distributed among these distances:
157 1 0.00
158 32 0.16
159 42 0.20
160 1 0.00
161 4 0.02
162 64 0.31
163 61 0.30
164 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCCTACAGGGGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACTTGGTCCCCCTCTGCGTCCTGTCGATCC
TGCTGTCGCAACCCTCGATCCAGTCCAAT
Found at i:18994295 original size:505 final size:501
Alignment explanation
Indices: 18993348--18994478 Score: 1342
Period size: 505 Copynumber: 2.2 Consensus size: 501
18993338 GTGGCTCAAA
*
18993348 ATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAAC
1 ATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
* * ** * * * **
18993413 CACGAAACAAGCATGC-GGGCGCTCAGTCGGCTTGAGAGGCAGAATGCACAAGCTAGGGATTGGC
66 CACGAAACGAGCGTGCAGGG-GCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGTTGGGGACCGGC
* * * ** **
18993477 CTGGTCCTCCCCTGTGTGCTGTCAATCCTGCTACCGTAACCCTCCGTCTGGTCTGATCTTAGACT
130 CTGGTCCTCCCCTGCGTCCTGTCAATCCTGCTACCGCAACCCTCCGTCCAGTCCAATCTTAGACT
* * * * **
18993542 GTGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGCGGGTGCAGAGCCGGTCGAA
195 GGGAATGAACTCCATATGCATAAGTCAACCCAAGAAACGAGCCTACGGGTGCAGAGCCGACCGAA
* * *
18993607 GAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCTTCTGCGTACTGCCAGTCCCACTGCCA
260 GAGGCATAATGCGCAAGTCGGGGATCGGACCGGTCCCCCTCTGCGTACTGCCAGTCCCACTACCA
*
18993672 CAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAA
325 CAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * *
18993737 ACGGGCGTGCGGGCGCTCAATCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATC-AGCCCGATC
390 ACGGGCGAGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGA-CCCGATC
* * * * * *
18993801 CCCCCTGCGTG-TGGCCGATCCTACTGCCGCAA-CCTTCAGTTCGGTCCG
454 CCCCCTACGTGCT-ACAGATCCTACTACCGCAACCCTT-AGTCCGATCCG
* *
18993849 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
* * *
18993914 CCATGAAACGAGCGTGCAGGGGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGTTGGGGACCGTC
65 CCACGAAACGAGCGTGCAGGGGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGTTGGGGACCGGC
* ** **
18993979 TTGGTCC-CCCCTGCGTCCTGTTGATCCTGCTGTCGCAACCCT-CGATCCAGTCCAATCTTAGAC
130 CTGGTCCTCCCCTGCGTCCTGTCAATCCTGCTACCGCAACCCTCCG-TCCAGTCCAATCTTAGAC
* * *
18994042 TGGGAATGAACTCCATATGCCTAAGTCAACCAACCCATGAAACGAGCCTACGGGTGCTGAGCCGA
194 TGGGAATGAACTCCATATGCATAAGT----CAACCCAAGAAACGAGCCTACGGGTGCAGAGCCGA
* * * * * *
18994107 CCGGAGAGGCGTAATGCGCAAGTCGGGGATCGGACTGGTCCCCCTCTGCGTGCTGTC-GATCCCG
255 CCGAAGAGGCATAATGCGCAAGTCGGGGATCGGACCGGTCCCCCTCTGCGTACTGCCAG-TCCCA
* * * *
18994171 CTACCATAATCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
319 CTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * * *
18994236 CATGAAACGGGCGAGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCATAAGCCGGGGATCGATC
384 CATGAAACGGGCGAGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGACC
* * * *
18994301 CGATCCCCCCTACGTGCTACAGATCCTGCTACCGTAACCCTTGGTCCGATCTG
449 CGATCCCCCCTACGTGCTACAGATCCTACTACCGCAACCCTTAGTCCGATCCG
* * * * *
18994354 ATCTTAGACTAGGAATGAACTTCGTATGCTTAGAC-TAGGGATGATCTTTGTATGCCTAAGTCAA
1 ATCTTAGACT-GGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAA
* * * * * * * *
18994418 CCCACGAAACGAGTGTGCAGGCGCTTAGCCGACCAGAGAGGTAGGATGCGCAAGTCGGGGA
64 CCCACGAAACGAGCGTGCAGGGGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGTTGGGGA
18994479 TCAAACGGGT
Statistics
Matches: 531, Mismatches: 87, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
500 2 0.00
501 75 0.14
502 107 0.20
503 3 0.01
504 2 0.00
505 336 0.63
506 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (501 bp):
ATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCAGGGGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGTTGGGGACCGGCC
TGGTCCTCCCCTGCGTCCTGTCAATCCTGCTACCGCAACCCTCCGTCCAGTCCAATCTTAGACTG
GGAATGAACTCCATATGCATAAGTCAACCCAAGAAACGAGCCTACGGGTGCAGAGCCGACCGAAG
AGGCATAATGCGCAAGTCGGGGATCGGACCGGTCCCCCTCTGCGTACTGCCAGTCCCACTACCAC
AACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CGGGCGAGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCC
CCCTACGTGCTACAGATCCTACTACCGCAACCCTTAGTCCGATCCG
Found at i:18994392 original size:26 final size:26
Alignment explanation
Indices: 18994356--18994408 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18994346 CCGATCTGAT
18994356 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* * *
18994382 CTTAGACTAGGGATGATCTTTGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
18994408 C
1 C
18994409 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:18996033 original size:26 final size:26
Alignment explanation
Indices: 18995997--18996049 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18995987 TTGGTTCGAT
*
18995997 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18996023 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18996049 C
1 C
18996050 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18996630 original size:26 final size:26
Alignment explanation
Indices: 18996601--18996653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18996591 CCGGTCCGAT
*
18996601 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
18996627 CTTACACTGGGGATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18996653 C
1 C
18996654 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18996725 original size:184 final size:184
Alignment explanation
Indices: 18996415--18996755 Score: 436
Period size: 184 Copynumber: 1.9 Consensus size: 184
18996405 GTGGCTCAAA
* * *
18996415 ATCTTAGACTAGGAATGAACTCTGTGTGCTTAGACATGGAATGAACTACGTACGCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTACACATGGAATGAACTACGTACGCCTAAGCCAAC
* * * *
18996480 CCATGAAATGAGCGTACAGGCACTCAGCCAGTCGGAAAGGTAGAATGCGCAAGCTGGGGATC-GA
66 CCATGAAACGAGCGTACAGGCACTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAG-
*
18996544 CCCGATCCCCC-CTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCCG
130 CCCGA-CCCCCTCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGGTCCG
* * * * *
18996599 ATCTTAGACTGGGAATGAACTCCGTATGCTTACAC-TGGGGATGAACTTCGTATGCCTAAGTCAA
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTACACAT-GGAATGAACTACGTACGCCTAAGCCAA
* * ** * * *
18996663 CCCATGAAACGAGTGTACGGGTGCTCAGCCAGCCGGAGAGGCATAATGCGTAAGCCGGGGATCAG
65 CCCATGAAACGAGCGTACAGGCACTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAG
* *
18996728 CTCGACCCCCTCTGCGTGCTATCGATCC
130 CCCGACCCCCTCTACGTGCTATCGATCC
18996756 CGTTGCCGGT
Statistics
Matches: 132, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
183 6 0.05
184 125 0.95
185 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCTTACACATGGAATGAACTACGTACGCCTAAGCCAAC
CCATGAAACGAGCGTACAGGCACTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGC
CCGACCCCCTCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGGTCCG
Found at i:18996985 original size:57 final size:58
Alignment explanation
Indices: 18996893--18997010 Score: 157
Period size: 57 Copynumber: 2.0 Consensus size: 58
18996883 CAAGTCAGGA
*
18996893 TCGGCCCGGTCCCCCCCTATGAGCTGCCGATCCTACTGCTGGTCCTACTGCCACAACCC
1 TCGGCCCGGT-CCCCCCTACGAGCTGCCGATCCTACTGCTGGTCCTACTGCCACAACCC
* * * * * *
18996952 TCGGCCCGGT-CCCCCTACGTGCTTCTGATCCTACTGCTGGTCCTGCTGCCGCAATCC
1 TCGGCCCGGTCCCCCCTACGAGCTGCCGATCCTACTGCTGGTCCTACTGCCACAACCC
18997009 TC
1 TC
18997011 AGTCTAATCT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
57 42 0.81
59 10 0.19
ACGTcount: A:0.11, C:0.44, G:0.21, T:0.24
Consensus pattern (58 bp):
TCGGCCCGGTCCCCCCTACGAGCTGCCGATCCTACTGCTGGTCCTACTGCCACAACCC
Found at i:18997279 original size:159 final size:158
Alignment explanation
Indices: 18997054--18997547 Score: 530
Period size: 159 Copynumber: 3.1 Consensus size: 158
18997044 GCTTAGATAT
* * *
18997054 GGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGACGCTCAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * *
18997119 AGACAGAATGCGCAAGTCGGGGAAT-GGCCTGGTCACCCCCTCCGTGCTGTCGATCCTGCTATCG
66 AGGCAGAATGCGCAAGACGGGG-ATCGGCCCGGTC-CCCCCTGCGTGCTGTCGATCCTGCTACCG
* *
18997183 TAACCCTCGATCCGGTCCAATCTTAGACTG
129 CAACCCTCGATCCGGTCCGATCTTAGACTG
* * * *
18997213 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAAGCCGGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * * ** * * *
18997278 AGGCATAATACGTAAGACGAGGATCAGCCCGGTCCCCATCTGCGTGCTACCGGTCTTGCTACCAC
66 AGGCAGAATGCGCAAGACGGGGATCGGCCCGGTCCCC-CCTGCGTGCTGTCGATCCTGCTACCGC
* **
18997343 AACCCTCGATCCGG-CTGGGGCTTAGACAT-
130 AACCCTCGATCCGGTC-CGATCTTAGAC-TG
* * *
18997372 GGAATGAACTCCCTATGCCTAAGCCAACCC-CTGAAATG-GACGTGCAGGCGCTCAGCCGGCCGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAATGAG-CGTGCGGGCGCTCAGCCGGCCGG
* * * *
18997435 AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCG
64 AGAGGCAGAATGCGCAAGACGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCG
* * *
18997500 CAATCCTCGATCCAGTCTGATCTTAGACTG
129 CAACCCTCGATCCGGTCCGATCTTAGACTG
* *
18997530 GTAATGAACTTCGTATGC
1 GGAATGAACTCCGTATGC
18997548 TTAGACTAAA
Statistics
Matches: 269, Mismatches: 58, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 63 0.23
159 204 0.76
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
AGGCAGAATGCGCAAGACGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCA
ACCCTCGATCCGGTCCGATCTTAGACTG
Found at i:18998897 original size:159 final size:156
Alignment explanation
Indices: 18998268--18998919 Score: 504
Period size: 159 Copynumber: 4.2 Consensus size: 156
18998258 AACTCCGTAT
* * * * *
18998268 GCTTAGAGGTGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGA-CTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAT
* * * *
18998333 CCGACCGGAGAGGCAGAATGTGCAAGCC--GG--C--CC--TGCCCCCTGCGTGCTGCCGATCCT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCCTGCGTGCTGCCGATCCC
* * * *
18998390 GCTGCTGCAACCCTCAGTCAGGTC-CGA
130 GCTACCGCAACCCTCGGTC-GGTCTGGA
* * * * * * * * * *
18998417 TCTTAGACTGGGAATTAACTTCGTATGCATAAGTCAACCCACGAAAAGAGTGTGCGGGTGCTGAT
1 GCTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAT
* * * * * * *
18998482 CCGGCCGAAGAGGCATAATGCCCAAACTGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGA-TCCCCC-CTGCGTGCTGCCGATC
** * *
18998547 CCGCTGTCTCAACCCTCGGTCCGG-CTGGG
128 CCGCTACCGCAACCCTCGGT-CGGTCTGGA
* ** *
18998576 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAT-AGGTGTGCGGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGCGCTCA
* * * * **
18998640 -CCGGCTGGAGAGGTAGAATGCGCAAGCCGGGGATAGGCCCGAT-CCCCTTCGCGTGCTGTTGAT
64 TCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGATCCCCCCT-GCGTGCTGCCGAT
* * * * * * *
18998703 CCCGTTACCACAACCTTTGGTCCGACTGGG
127 CCCGCTACCGCAACCCTCGGTCGGTCTGGA
* * *
18998733 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCACGAAACGGGCGTGCAGGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGGCGCTCA
* * * *
18998798 TCCGGCCGGAGAGGTAAAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTGCCAATC
64 TCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGATCCCCCCTGCGTGCTGCCGATC
** *
18998863 TTGCTACCGTAACCCTCGGTCTGGTCT-GA
128 CCGCTACCGCAACCCTCGGTC-GGTCTGGA
* *
18998892 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACT-GGAATGAACTCCCTATGC
18998920 TCAGATTGGG
Statistics
Matches: 390, Mismatches: 88, Indels: 40
0.75 0.17 0.08
Matches are distributed among these distances:
148 1 0.00
149 71 0.18
151 2 0.01
153 1 0.00
155 2 0.01
156 3 0.01
157 81 0.21
158 48 0.12
159 172 0.44
160 9 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCATC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCCTGCGTGCTGCCGATCCCG
CTACCGCAACCCTCGGTCGGTCTGGA
Found at i:18999713 original size:159 final size:158
Alignment explanation
Indices: 18999298--18999800 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 158
18999288 AACTCCGTAT
** * * *
18999298 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTGACCCATGAAACGAGTGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCGA
* * * *
18999363 CCGGCCAGAGAGGCAAAATGCACAAGCCGGGGCTCGACCCGATCCCCCCTGTATGCTGTCGATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGTATGCTGTCGATCC
* * *
18999428 TACTACCGCAACCCTCGGTCCGGTCCGA
131 CACTACCACAACCCTCGGTCCGCTCCGA
* * * * *
18999456 TCTTGGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCG
* * * * * * * * * *
18999519 AACCGATCGAAAAGGCATAATGAGCATGCCAGGGATCGGCCTGATCCCCCTCTGTGTGCTGTCGA
65 -ACCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGTATGCTGTCGA
* * * *
18999584 TCCCGCTGCCACAACCCTCGGTCCGACT-GGG
128 TCCCACTACCACAACCCTCGGTCCG-CTCCGA
* * *
18999615 GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG-GACGTGCGGGCGCTCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCG
* * * * * * * *
18999679 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGGTACCCCCTGCATGCTATCGATC
65 ACCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGTATGCTGTCGATC
* * * * *
18999744 CTACTACCGCAACCCTCGATCCGGTCTGA
130 CCACTACCACAACCCTCGGTCCGCTCCGA
*
18999773 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
18999801 TTAGACTAGG
Statistics
Matches: 271, Mismatches: 65, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 143 0.53
159 122 0.45
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCGA
CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGTATGCTGTCGATCC
CACTACCACAACCCTCGGTCCGCTCCGA
Found at i:18999803 original size:26 final size:26
Alignment explanation
Indices: 18999774--18999826 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18999764 CCGGTCTGAT
18999774 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
18999800 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
18999826 C
1 C
18999827 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:19006755 original size:159 final size:159
Alignment explanation
Indices: 19006421--19006840 Score: 414
Period size: 159 Copynumber: 2.6 Consensus size: 159
19006411 AACTCCGTAT
* *
19006421 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGC-GGCGCTCAG
* * * * * * ** * *
19006486 TCGGTCGGAGAGGTAGAATGTACAAGTTGGGGATCGGCTCGATCCCCCCCCTGCGTGCTATCGAT
65 CCGGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCTCGATCAACCCCCTACGTGCTACCGAT
** *
19006551 CCTGCTACCGTAACCCTCGATCTGGTTCGA
130 CCTGCTACCACAACCCTCGATCTGGCTCGA
* ** * * * *
19006581 TCTTAGACCGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGCCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGG-CGCTCAG
* * * * * *
19006646 CCGGCCGAAGAGGCATAATGCACAAGTCGGGGATTGGCTCGGT-AACCCTCTACGTGCTGCCGGT
65 CCGGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCTCGATCAACCCCCTACGTGCTACCGAT
* * * * *
19006710 CCTGTTGCCACAACCCTCGGTCTGGCTGGG
130 CCTGCTACCACAACCCTCGATCTGGCTCGA
* * * *
19006740 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGG-GTACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGCG--CTCA
* * *
19006804 GCCGGTCGGAGAGGCAGAATGCGCAAG-CTGGGGATCG
64 GCCGGCCGAAGAGGCAGAATGCACAAGTC-GGGGATCG
19006841 ACCCAAACCC
Statistics
Matches: 207, Mismatches: 49, Indels: 9
0.78 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 1 0.00
159 118 0.57
160 87 0.42
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCTCGATCAACCCCCTACGTGCTACCGATC
CTGCTACCACAACCCTCGATCTGGCTCGA
Found at i:19007272 original size:184 final size:184
Alignment explanation
Indices: 19006740--19007294 Score: 598
Period size: 184 Copynumber: 3.0 Consensus size: 184
19006730 TCTGGCTGGG
* * * * * **
19006740 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *** * * * *
19006805 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCC-AAACCCTCATCCGTGTTGTCGATC
66 TCGGTCGGAGAGGTAGAATGCGCAAGC-GGGGATCGACCCGGTCCCCCCATACGTGCTATCGATC
* * * *
19006869 CTGCTGCCGCAACCTTCGGTTTGGTCTGATCTTAAAAT-AGGAATGAACTCCGTAT
130 CTGCTGCCGTAACCCTCGGTTTGGTCTGATCTTAGACTGA-GAATGAACTCCGTAT
* * * * * * *
19006924 GATTAGAC-TGGGGATGAACTCCGTATGCATATGTCAACCCACGAAACAAGCGTGTGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * **
19006988 GTCGGTCGGAGTGGTAGAATGTGCAAGCCATGGATCGACTCGGTCCCCCCCGACGTGCTATCGAT
65 GTCGGTCGGAGAGGTAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCCATACGTGCTATCGAT
* * * * *
19007053 CCAGCTACCGTAACCCTCGGTCTGGT-TCAATCTTAGACTGAGAATGAACTCCATAT
129 CCTGCTGCCGTAACCCTCGGTTTGGTCT-GATCTTAGACTGAGAATGAACTCCGTAT
* * *
19007109 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
19007174 TCGG-CGGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCCATTCGTGCTATCGATC
66 TCGGTCGGAGAGGTAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCCATACGTGCTATCGATC
* * *
19007238 CTTCTGCCGTAACCCACGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTGCCGTAACCCTCGGTTTGGTCTGATCTTAGACTGAGAATGAACTCCGTAT
19007293 GC
1 GC
19007295 CTAAGTCAAC
Statistics
Matches: 297, Mismatches: 67, Indels: 14
0.79 0.18 0.04
Matches are distributed among these distances:
183 1 0.00
184 178 0.60
185 116 0.39
186 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGTAGAATGCGCAAGCGGGGATCGACCCGGTCCCCCCATACGTGCTATCGATCC
TGCTGCCGTAACCCTCGGTTTGGTCTGATCTTAGACTGAGAATGAACTCCGTAT
Found at i:19007586 original size:157 final size:156
Alignment explanation
Indices: 19007119--19007608 Score: 486
Period size: 157 Copynumber: 3.1 Consensus size: 156
19007109 GCTTAGGCAT
* * ** *
19007119 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGTCGG-CGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-GCTCAACCGGCCGAAG
* ** * * *
19007183 AGGTAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCCATT-CGTGCTATCGATCCTTCTGCCG
65 AGGCAGAATGTGCAAGCCGGGGATCGACCCGGT--CCCC-TTGCGTGCTATCGATCCTGCTACCG
* * * *
19007247 TAACCCACGGTTTGGTCTGATCTTAGACTG
127 CAACCCTCGGTTCGGTCTGATCTTAGACTA
* * * ***
19007277 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGGCAGTACCGGCCGAAGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGCTCAACCGGCCGAAGA
* * * * * * *
19007342 GGCATAATGTGCAAGCTGGGGATCGATCTGGTCCCCTCTGCGTGCTACCGGTCCTGCTACCACAA
66 GGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCT-TGCGTGCTATCGATCCTGCTACCGCAA
* * **
19007407 CCCTCGATTC-GACTGGGGCTTAGAC-A
130 CCCTCGGTTCGGTCT-GATCTTAGACTA
* *
19007433 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAACCGGCCGAA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-GCTCAACCGGCCGAA
* * * * * * *
19007498 AAGGCAGATTGTGTAAGCCGGGGATCGACCCGATCGCCCTTGCATGCTGTCGAT-CTGCTATCGC
64 GAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTC-CCCTTGCGTGCTATCGATCCTGCTACCGC
*
19007562 AACCCTCGGTCCGGTCTGATCTTAGACTA
128 AACCCTCGGTTCGGTCTGATCTTAGACTA
19007591 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
19007609 TTCGACTGGA
Statistics
Matches: 263, Mismatches: 60, Indels: 19
0.77 0.18 0.06
Matches are distributed among these distances:
155 1 0.00
156 8 0.03
157 125 0.48
158 125 0.48
159 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGCTCAACCGGCCGAAGA
GGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCTTGCGTGCTATCGATCCTGCTACCGCAAC
CCTCGGTTCGGTCTGATCTTAGACTA
Found at i:19008633 original size:26 final size:26
Alignment explanation
Indices: 19008597--19008649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19008587 CCAGTCTGAT
19008597 CTTAGACTGGGAATG-AACTCGATATG
1 CTTAGACTGGGAATGAAACTCG-TATG
*
19008623 CTTAGACTGGGGATGAAACTCGTATG
1 CTTAGACTGGGAATGAAACTCGTATG
19008649 C
1 C
19008650 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAACTCGTATG
Found at i:19009772 original size:158 final size:158
Alignment explanation
Indices: 19009427--19009772 Score: 338
Period size: 158 Copynumber: 2.2 Consensus size: 158
19009417 CGGTTCGATC
* * * ** *
19009427 GATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCACCCCATGAAATTAGCGTGCGGGCACTA
1 GATCTTAGACTGGGAATGAACTCTATATGCATAAGCCAACCCATGAAACGAGCATGCGGGCACTA
* ** ** * * * ** *
19009492 AGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCGGACCCACTCTGCATGTTGTCGGT
66 AGCCGATCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGACCCACCCTGCATGCTACCGAT
*
19009557 CCCGCTGCCACAGCCCCTGGTCCGACTG
131 CCCGCTGCCACAACCCCTGGTCCGACTG
** ** * * **
19009585 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGTT
1 GATCTTAGAC-TGGGAATGAACTCTATATGCATAAGCCAACCCATGAAACGAGCATGCGGGCACT
* * *
19009649 AAGCCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCACCCTGCGTGCTACCGA
65 AAGCCGATCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGACCCACCCTGCATGCTACCGA
* * * * *
19009714 TCCTGCTGTCGCAA-CCCTCGGTCTG-CTTT
130 TCCCGCTGCCACAACCCCT-GGTCCGAC-TG
19009743 GATCTTAGACTGGGAATGAACTCTATATGC
1 GATCTTAGACTGGGAATGAACTCTATATGC
19009773 TTAGACTAGG
Statistics
Matches: 147, Mismatches: 37, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
157 6 0.04
158 140 0.95
159 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GATCTTAGACTGGGAATGAACTCTATATGCATAAGCCAACCCATGAAACGAGCATGCGGGCACTA
AGCCGATCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGACCCACCCTGCATGCTACCGAT
CCCGCTGCCACAACCCCTGGTCCGACTG
Found at i:19011355 original size:160 final size:157
Alignment explanation
Indices: 19011019--19011427 Score: 590
Period size: 160 Copynumber: 2.6 Consensus size: 157
19011009 AATGAACCCT
* * * * * *
19011019 GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGA-TCGGAGAGGTAAAATGC
1 GTATGCCTAAGTCAACCCATGAAATCAGCGTTCGGGTGCT-AACCGACT-GGAGAGG-CATATGC
* * **
19011083 GTAAGCCAGGGACCGGCCCGATCCC-CCCTACGTGCTGTCGATCCTGCTGTGGCAACCCTCAGTC
63 GCAAGCCAGGGATCGGCCCGATCCCTCCCTACGTGCTGTCGATCCTGCTGTCACAACCCTCAGTC
19011147 CGGTCCGATCTTACACTGGGAATGAACTAC
128 CGGTCCGATCTTACACTGGGAATGAACTAC
*
19011177 GTATGCCTAAGTCAACCCATGAAATCAGTGTTCGGGTGCTGAACCGACTGGAGAGGCATATGCGC
1 GTATGCCTAAGTCAACCCATGAAATCAGCGTTCGGGTGCT-AACCGACTGGAGAGGCATATGCGC
19011242 AAGCCAGGGATCGGCCCGATCCCTCCCTACGTGCTGTCGATCCCTGCTGTCACAACCCTCAGTTC
65 AAGCCAGGGATCGGCCCGATCCCTCCCTACGTGCTGTCGAT-CCTGCTGTCACAACCCTCAG-TC
* *
19011307 GGGTCCGATCTTACGCTGGGAATGAACTAC
128 CGGTCCGATCTTACACTGGGAATGAACTAC
*
19011337 GTATGCCTAAGTCAACCCACGAAATCAGCGTTCGGGTGCTAAGCC-AGCTGGAGAGGCATAATGC
1 GTATGCCTAAGTCAACCCATGAAATCAGCGTTCGGGTGCTAA-CCGA-CTGGAGAGGCAT-ATGC
19011401 GCAAGCCAGGGATCGGCCCGATCCCTC
63 GCAAGCCAGGGATCGGCCCGATCCCTC
19011428 TCTTCCCACT
Statistics
Matches: 228, Mismatches: 16, Indels: 11
0.89 0.06 0.04
Matches are distributed among these distances:
157 28 0.12
158 65 0.29
159 22 0.10
160 82 0.36
161 31 0.14
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GTATGCCTAAGTCAACCCATGAAATCAGCGTTCGGGTGCTAACCGACTGGAGAGGCATATGCGCA
AGCCAGGGATCGGCCCGATCCCTCCCTACGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCCGG
TCCGATCTTACACTGGGAATGAACTAC
Found at i:19011676 original size:156 final size:159
Alignment explanation
Indices: 19011227--19011752 Score: 399
Period size: 156 Copynumber: 3.3 Consensus size: 159
19011217 GAACCGACTG
* * * * * * *
19011227 GAGAGGCA-TATGCGCAAGCCAGGGATCGGCCCGATCCCTCCCTACGTGCTGTCGATCCCTGCTG
1 GAGAGGCAGAATGCGCAAGCTAGGGATAGACCCGATCCC-CCCTGCGTGCTGTCGGTCCCCGCTG
* * * * * ** * * * *
19011291 TCACAACCCTCAGTTCGGGTCCGATCTTACG-C-TGGGAATGAACTACGTATGCCTAAGTCAACC
65 CCACAACCCTCGGTCCGGCT-AGGGCTTA-GACATGGAAATCAACTCCGTATGCCTAAG-CAACA
* * * * *
19011354 CACGAAATC-AGCGTTCGGGTGCTAAGCCAGCTG
127 CACGAAA-CAAGCATGCGGGCGCTCAGCCAGCTA
* * * * * * *** * ** *
19011387 GAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCTCTCTTCCCACTGGCGGT-CTTGCTA
1 GAGAGGCAGAATGCGCAAGCTAGGGATAGACCCGATCCC-CCCTGCGTGCTGTCGGTCCCCGCTG
* * * *
19011451 CCGAC-ACCATCTGTCCGGCTGGGGCTTAGACATGGAAATGAACTCCGTATGCCTAAGCAACACA
65 CC-ACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAAATCAACTCCGTATGCCTAAGCAACACA
* * * * *
19011515 TGAAAC-GGCATGTGGGCGCTCATCGA-CTA
129 CGAAACAAGCATGCGGGCGCTCAGCCAGCTA
*
19011544 GAGAGGCAGAATGCGCAAGCTGGGGATAG-CCC-AGTCCCCCCTGCGTGCTGTCGGTCCCCGCTG
1 GAGAGGCAGAATGCGCAAGCTAGGGATAGACCCGA-TCCCCCCTGCGTGCTGTCGGTCCCCGCTG
* * *
19011607 CCACAACCCTCGGTCCGGTTAGGGCTTAGACATGG-AATCAACTCCTTATGCCTAAGCCAACCCA
65 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAAATCAACTCCGTATGCCTAAG-CAACACA
* * *
19011671 CGAAACAAGCTTGCGGGGGCTCAGCCAGCTG
129 CGAAACAAGCATGCGGGCGCTCAGCCAGCTA
* * *
19011702 GAGAGGCAGAATGCGTAAGCTAGGGATCGACCCGATCCCCCCTGTGTGCTG
1 GAGAGGCAGAATGCGCAAGCTAGGGATAGACCCGATCCCCCCTGCGTGCTG
19011753 CCGATCCTAC
Statistics
Matches: 291, Mismatches: 63, Indels: 25
0.77 0.17 0.07
Matches are distributed among these distances:
155 33 0.11
156 50 0.17
157 41 0.14
158 42 0.14
159 34 0.12
160 49 0.17
161 42 0.14
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GAGAGGCAGAATGCGCAAGCTAGGGATAGACCCGATCCCCCCTGCGTGCTGTCGGTCCCCGCTGC
CACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAAATCAACTCCGTATGCCTAAGCAACACACG
AAACAAGCATGCGGGCGCTCAGCCAGCTA
Found at i:19011742 original size:158 final size:157
Alignment explanation
Indices: 19010997--19011807 Score: 635
Period size: 158 Copynumber: 5.1 Consensus size: 157
19010987 AACTTCGTAT
* * *
19010997 GCTTAGATATGGAATGAAC-CCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCC-GTATGCCTAAGCCAACCCATGAAA-CAGCTTGCGGGTGCTCA
* * * * *
19011061 GCC-GATCGGAGAGGTAAAATGCGTAAGCCAGGGACCGGCCCGATCCCCCCTACGTGCTGTCGAT
64 GCCAGCT-GGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
*** *
19011125 CCTGCTGTGGCAACCCTCAGTCCGGTCCGA
128 CCTGCTGCCACAACCCTCGGTCCGGTCCGA
* * * * * *
19011155 TCTTACAC-TGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAATCAG-TGTTCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CAGCT-TGCGGGTGCTC
* *
19011218 AACC-GACTGGAGAGGCA-TATGCGCAAGCCAGGGATCGGCCCGATCCCTCCCTACGTGCTGTCG
63 AGCCAG-CTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCC-CCCTACGTGCTGTCG
* * *
19011281 ATCCCTGCTGTCACAACCCTCAGTTCGGGTCCGA
126 AT-CCTGCTGCCACAACCCTC-GGTCCGGTCCGA
* * * *
19011315 TCTTACG-C-TGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATCAGCGTT-CGGGTGCT
1 GCTTA-GACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CAGC-TTGCGGGTGCT
* * * * *** *
19011377 AAGCCAGCTGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCTCTCTTCCCACTGGCG
62 CAGCCAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCC-CCCTACGTGCTGTCG
* * * * * * *
19011442 GTCTTGCTACCGAC-ACCATCTGTCCGG-CTGGG
126 ATCCTGCTGCC-ACAACCCTCGGTCCGGTC-CGA
* * * * * *
19011474 GCTTAGACATGGAAATGAACTCCGTATGCCTAAG-CAACACATGAAACGGCATGTGGGCGCTCAT
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGCTTGCGGGTGCTCAG
* * ** * * *
19011538 CGA-CTAGAGAGGCAGAATGCGCAAGCTGGGGAT-AGCCC-AGTCCCCCCTGCGTGCTGTCGGTC
65 CCAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCCCTACGTGCTGTCGAT-
* ** *
19011600 CCCGCTGCCACAACCCTCGGTCCGGTTAGG
128 CCTGCTGCCACAACCCTCGGTCCGGTCCGA
* * * *
19011630 GCTTAGACATGGAATCAACTCCTTATGCCTAAGCCAACCCACGAAACAAGCTTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AGCTTGCGGGTGCTCAG
* * * ** *
19011695 CCAGCTGGAGAGGCAGAATGCGTAAGCTAGGGATCGACCCGATCCCCCCTGTGTGCTGCCGATCC
65 CCAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* *** *
19011760 TACTGCTGTAACCCTCGGTTCGGTCCGA
130 TGCTGCCACAACCCTCGGTCCGGTCCGA
* * *
19011788 TCCTAGACAGGGAATGAACT
1 GCTTAGACATGGAATGAACT
19011808 TCATATGCTT
Statistics
Matches: 525, Mismatches: 101, Indels: 54
0.77 0.15 0.08
Matches are distributed among these distances:
155 33 0.06
156 50 0.10
157 69 0.13
158 156 0.30
159 61 0.12
160 111 0.21
161 44 0.08
162 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGCTTGCGGGTGCTCAGC
CAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCCGA
Found at i:19011840 original size:26 final size:26
Alignment explanation
Indices: 19011791--19011841 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19011781 GGTCCGATCC
*
19011791 TAGACAGGGAATGAACTTCATATGCT
1 TAGACAGGGAATGAACTCCATATGCT
* * *
19011817 TAGACTGGGGATGAACTCCGTATGC
1 TAGACAGGGAATGAACTCCATATGC
19011842 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCATATGCT
Found at i:19013393 original size:26 final size:26
Alignment explanation
Indices: 19013342--19013394 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19013332 GGCTCAAACT
*
19013342 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
19013368 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACATATG
19013394 C
1 C
19013395 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:19014168 original size:26 final size:25
Alignment explanation
Indices: 19014139--19014190 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19014129 TCGGTCCGAT
19014139 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACT-CGTATG
* *
19014165 CTTAGACTGGGGATGAACTCGTATG
1 CTTAGACTGCGAATGAACTCGTATG
19014190 C
1 C
19014191 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACTGCGAATGAACTCGTATG
Found at i:19014918 original size:183 final size:185
Alignment explanation
Indices: 19014523--19014920 Score: 423
Period size: 183 Copynumber: 2.2 Consensus size: 185
19014513 CGGTCAGTCA
*
19014523 GATCTTAGACTGGGAATGAACTCCGT-TGCTTAGACATGAAATGAACTCCATATGCCTTAAGCTA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCATACGCCTTAAGCTA
* * * *
19014587 CCCACGAAATGAGCATAGCAAGCGCTCAGCCGACCGGAGAGGCAAAATGTGCAAGTCAGGGATCA
66 CCCACGAAACGAGCATAGCAAGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCAGGGACCA
* * * * *
19014652 GCCCGATCCCCTCTTACGTGCTACTGGTCCTGCTGCCTTAACCCTTAGTCTGATCC
131 GCCCAATCCCCCCTTA-GTGCTACTGATCCTGCTGCCGTAACCCTCAGTCTGATCC
* * * *
19014708 GATCTTAGATTGGGAATGTACTCCGTATGCTTAGACATGGAATGAACTCCGTACGCC-TAAGCTA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCATACGCCTTAAGCT-
* * ** * * * *
19014772 ACCCATGAAACGAGCGT-GCTGGTGCTCAGCC-AGTCGGAGA-GCAGAATGCGCAAGCCGGGGAC
65 ACCCACGAAACGAGCATAGCAAGCGCTCAGCCGA-CCGGAGAGGCAAAATGCGCAAGCCAGGGAC
* * * * * * *
19014834 CGGCCCAATCCCCCCTGT-GTGCT-GTCGATCTTGCTGCCGTAACTCTCAGTTTGGTCT
129 CAGCCCAATCCCCCCT-TAGTGCTACT-GATCCTGCTGCCGTAACCCTCAGTCTGATCC
* *
19014891 TATCTTCGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGGGAATGAACTCCGTATGC
19014921 CTAAGTCAAC
Statistics
Matches: 175, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
182 1 0.01
183 54 0.31
184 31 0.18
185 48 0.27
186 41 0.23
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (185 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCATACGCCTTAAGCTA
CCCACGAAACGAGCATAGCAAGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCAGGGACCA
GCCCAATCCCCCCTTAGTGCTACTGATCCTGCTGCCGTAACCCTCAGTCTGATCC
Found at i:19015249 original size:158 final size:158
Alignment explanation
Indices: 19014746--19015303 Score: 516
Period size: 158 Copynumber: 3.5 Consensus size: 158
19014736 GCTTAGACAT
* * * * * *
19014746 GGAATGAACTCCGTACGCCTAAGCTAACCCATGAAACGAGCGTGCTGGTGCTCAGCC-AGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGA
* *** * * *
19014810 GA-GCAGAATGCGCAAGCCGGGGACCGGCCCAATCCCCC-CTGTGTGCTGTCGATCTTGCTGCCG
65 GAGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCTCTACATGCTGTCGATCCTGCTACCA
* * *
19014873 TAACTCTCAGTTTGGTCTTATCTT-CGACTG
130 CAACCCTCAGTTT-GTCTGATCTTAC-ACTG
* ** * ** ** *
19014903 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTTGGGCGCTGAGTTGACTGGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * * * ** *
19014968 AGGCATAATGTGCAAGCCGAGGATCGACCCGATCCCCCTCTACCTGCTACCGATCCCGCTACCAC
66 AGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCTCTACATGCTGTCGATCCTGCTACCAC
* * ** *
19015033 AACCCTCGGTTTGGCTGGGGCTTAGACAT-
131 AACCCTCAGTTTGTCT-GATCTTACAC-TG
* * * * *
19015062 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * *
19015127 AGGCAGAATGCACAAGTCGGGGACCGACCCAATCCCCCTC-ACATGCTGTCGATCCTACTACCAC
66 AGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCTCTACATGCTGTCGATCCTGCTACCAC
*
19015191 AACCCTCAGTTCGATCTGATCTTACACTG
131 AACCCTCAGTTTG-TCTGATCTTACACTG
* ** * * * *
19015220 GGAATGAACTTCGTATGCCTAAGTTAACCCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
*
19015285 AGGCAGGATGCGCAAGCCG
66 AGGCAGAATGCGCAAGCCG
19015304 TGGATCGAAC
Statistics
Matches: 311, Mismatches: 82, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
157 52 0.17
158 140 0.45
159 118 0.38
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
AGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCTCTACATGCTGTCGATCCTGCTACCAC
AACCCTCAGTTTGTCTGATCTTACACTG
Found at i:19015311 original size:317 final size:316
Alignment explanation
Indices: 19014736--19015311 Score: 717
Period size: 317 Copynumber: 1.8 Consensus size: 316
19014726 TACTCCGTAT
* * * * * *
19014736 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCTAACCCATGAAACGAGCGTGCTGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *** *
19014801 CCAGTCGGAGAGCAGAATGCGCAAGCCGGGGACCGGCCCAATCCCCCCTGTGTGCTGTCGATCTT
66 CCAGCCAGAGAGCAGAATGCACAAGCCGGGGACCGACCCAATCCCCCCTACATGCTGTCGATCCT
* * ** * * * *
19014866 GCTGCCGTAACTCTCAGTTTGGTCTTATCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
131 ACTACCACAACCCTCAGTTCGATCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* *** * * * ** * *
19014931 CCATGAAACGAGCGTTTGGGCGCTGAGTTGACTGGAAAGGCATAATGTGCAAGCCGAGGATCGAC
196 CCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGAC
19014996 CCGATCCCCCTCTACCTGCTACCGATCCCGCTACCACAACCCTCGGTTTGGCTGGG
261 CCGATCCCCCTCTACCTGCTACCGATCCCGCTACCACAACCCTCGGTTTGGCTGGG
* * *
19015052 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
*
19015117 CC-GACCAGAGAGGCAGAATGCACAAGTCGGGGACCGACCCAAT-CCCCCTCACATGCTGTCGAT
66 CCAG-CCAGAGA-GCAGAATGCACAAGCCGGGGACCGACCCAATCCCCCCT-ACATGCTGTCGAT
*
19015180 CCTACTACCACAACCCTCAGTTCGATCTGATCTTAC-ACTGGGAATGAACTTCGTATGCCTAAGT
128 CCTACTACCACAACCCTCAGTTCGATCTGATCTT-CGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
19015244 TAACCCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCCGTGGAT
192 CAACCCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAAAGGCAGAATGCGCAAGCCGAGGAT
19015309 CGA
257 CGA
19015312 ACGGGTGGTA
Statistics
Matches: 214, Mismatches: 42, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
315 1 0.00
316 69 0.32
317 143 0.67
318 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCAGCCAGAGAGCAGAATGCACAAGCCGGGGACCGACCCAATCCCCCCTACATGCTGTCGATCCT
ACTACCACAACCCTCAGTTCGATCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGAC
CCGATCCCCCTCTACCTGCTACCGATCCCGCTACCACAACCCTCGGTTTGGCTGGG
Found at i:19016274 original size:26 final size:26
Alignment explanation
Indices: 19016245--19016297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19016235 CTGATTAGAT
19016245 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
19016271 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19016297 C
1 C
19016298 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19016479 original size:26 final size:26
Alignment explanation
Indices: 19016441--19016493 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19016431 CAGGTCCGAT
19016441 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19016467 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19016493 C
1 C
19016494 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19016993 original size:26 final size:26
Alignment explanation
Indices: 19016942--19016993 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19016932 CTAGTCTGAT
* *
19016942 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19016968 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
19016994 TATAACTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19017631 original size:26 final size:26
Alignment explanation
Indices: 19017595--19017650 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19017585 CTGGTCTGAT
* *
19017595 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
19017621 CTTAGACTGGGGATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
19017647 CTTA
1 CTTA
19017651 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:19018004 original size:26 final size:26
Alignment explanation
Indices: 19017975--19018027 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19017965 CCGGTCCGAT
19017975 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
19018001 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19018027 C
1 C
19018028 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19018517 original size:26 final size:26
Alignment explanation
Indices: 19018476--19018528 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19018466 CCAATCTGAT
19018476 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
19018502 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
19018528 C
1 C
19018529 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19019577 original size:26 final size:26
Alignment explanation
Indices: 19019541--19019593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19019531 CCAGTTCGAT
*
19019541 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
19019567 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
19019593 C
1 C
19019594 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:19020645 original size:159 final size:158
Alignment explanation
Indices: 19020299--19020721 Score: 521
Period size: 159 Copynumber: 2.7 Consensus size: 158
19020289 AACTTCATAT
** * * *
19020299 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGG-TGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGCGGGCAG-TCA
* * * * * *
19020363 GCCGGTC-GAAGAGGCAAAATGCGTAAGTCGAGGATCGGCCCGGTCGCCCCTGCGTGCTGTCGAT
65 GCCGGCCAG-AGAGGCAAAATGCGCAAGTAGAGGATCGGCCCGATCGCCCCTGCGTCCTGCCGAT
* *
19020427 CCTACTGCCACAACCCTCGATTCGACTGGG
129 CCCACTGCCACAACCCTCGATCCGACTGGG
*
19020457 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGCGGGCAGTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGCGGGCAGTCAG
* * *
19020522 CCGGCCAGAGAGGCAGAATGGGCAAGCTAG-GGATCGGCCCGATC-CCCTTCTGCGTCCTGCCGG
66 CCGGCCAGAGAGGCAAAATGCGCAAG-TAGAGGATCGGCCCGATCGCCC--CTGCGTCCTGCCGA
** * * *
19020585 TCCCGTTGCCACAACCTTCGATCCGGCTGTG
128 TCCCACTGCCACAACCCTCGATCCGACTGGG
* * *
19020616 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGTGCGTGTGGGCAGTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGCGGGCAGTCAG
* * *
19020681 CCGGCCAGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCG
66 CCGGCCAGAGAGGCAAAATGCGCAAGTAGAGGATCGGCCCG
19020722 GTCCCTCCCT
Statistics
Matches: 229, Mismatches: 30, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
157 3 0.01
158 92 0.40
159 134 0.59
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGCGGGCAGTCAG
CCGGCCAGAGAGGCAAAATGCGCAAGTAGAGGATCGGCCCGATCGCCCCTGCGTCCTGCCGATCC
CACTGCCACAACCCTCGATCCGACTGGG
Found at i:19020826 original size:26 final size:26
Alignment explanation
Indices: 19020788--19020840 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19020778 CCGATTCAAT
19020788 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19020814 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19020840 C
1 C
19020841 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19021102 original size:158 final size:155
Alignment explanation
Indices: 19020814--19021310 Score: 491
Period size: 158 Copynumber: 3.1 Consensus size: 155
19020804 ACTCCATATG
* * *
19020814 CTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCATGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
* * * * * * *
19020879 TGGCCGGAGAGGCAGAATACGTAAGTCTGGGTCTGGCTCGATTGCCCCTGCGTGCTATCGATCCT
66 -CGCCGGAGAGGCAGAATGCGTAAGTCAGGATC-GACTCGA-TCCCCCTGCGTGCTGTCGATCCT
* * *
19020944 GCTACCGCAACACTCAGTCCGGTCCGAT
128 GCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
19020972 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
* * *
19021036 CCAGCCGGAGAGGCATAATGCGCAAGTCAGGATCGACTCGATCCCCCTCTGCGTGCTGTCGGTCC
65 CC-GCCGGAGAGGCAGAATGCGTAAGTCAGGATCGACTCGAT-CCCC-CTGCGTGCTGTCGATCC
* * * **
19021101 TGCTGCCACAACCCTTGGTCCGG-CTGGGG
127 TGCTGCCGCAACCCTCGGTCCGGTC-CGAT
* * * ** * *
19021130 CTTAGGCATGGAATGAACTCCCTAATGCCTAAGCCACCCCCCGAAATGTGCGTGTGGCGCACTCA
1 CTTAGACATGGAATGAACTCCGT-ATGCCTAAGCCAACCCATGAAATGAGCGTGCGG-GCACTCA
* * * *
19021195 GCCGCTGGAGAGGCAGAATGCGTAAGTCGGGGAATC-AGCCCGATCCCCCTGCGTGCTG-CCATT
64 GCCGCCGGAGAGGCAGAATGCGTAAGTC-AGG-ATCGA-CTCGATCCCCCTGCGTGCTGTCGA-T
19021258 CCTGCTGCCGCAACCCTCGGTCGCGGTCCGAT
125 CCTGCTGCCGCAACCCTCGGTC-CGGTCCGAT
*
19021290 CTTAGA-TTGGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
19021311 ATCATGTTTA
Statistics
Matches: 276, Mismatches: 48, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 11 0.04
158 137 0.50
159 81 0.29
160 37 0.13
161 9 0.03
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
CGCCGGAGAGGCAGAATGCGTAAGTCAGGATCGACTCGATCCCCCTGCGTGCTGTCGATCCTGCT
GCCGCAACCCTCGGTCCGGTCCGAT
Found at i:19021184 original size:514 final size:515
Alignment explanation
Indices: 19020236--19021241 Score: 1233
Period size: 514 Copynumber: 2.0 Consensus size: 515
19020226 CTGATCCTGT
** * * * *
19020236 TGCTGGTCCTGCTGTCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCATATGC
1 TGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCATATGC
* * * * **
19020301 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGTGCTCAGCC
66 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAGCC
* * * *
19020366 GGTCGAAGAGGCAAAATGCGTAAGTCGAGGATCGGCCCGGTCGCCCCTGCGTGCTGTCGATCCTA
131 GGCCGAAGAGGCAAAATACGTAAGTCGAGGATCGGCCCGATCGCCCCTGCGTGCTATCGATCCTA
* * * * *
19020431 CTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
196 CTACCACAACACTCGATCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * *
19020496 CACGAAACGTGCGTGCGGGCAGTCAACCGGCCAGAGAGGCAGAATGGGCAAGCTAGGGATCGGCC
261 CACAAAACGAGCGTGCGGGCACTCAACCAGCCAGAGAGGCAGAATGCGCAAGCTAGGGATCGACC
* * *
19020561 CGATCCCCTTCTGCGTCCTGCCGGTCCCGTTGCCACAACCTTCGATCCGGCTGTGGCTTAGACAT
326 CGATCCCCCTCTGCGTCCTGCCGGTCCCGCTGCCACAACCTTCGATCCGGCTGGGGCTTAGACAT
* * *
19020626 GGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGTGCGTGTGG-GCAGTCAGCCGGCCAGA
391 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGTGGCGCACTCAGCC-GCCAGA
*
19020690 GAGGCAAAATGCGCAAGTCGGGG-ATCAGCCCGGTCCCTCCCTGTGTGCAATCGATGCTGC
455 GAGGCAAAATGCGCAAGTCGGGGAATCAGCCCGATCCCTCCCTGTGTGCAATCGATGCTGC
*
19020750 TGCTGGTCCTGCTACCGCAACCCTCGATCCGAT-TCAATCTTAGACTGGGAATGAACTCCATATG
1 TGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCT-AATCTTAGACTGGGAATGAACTCCATATG
* * *
19020814 CTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCATGCGGGCACTCAGC
65 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAGC
* * * * *
19020879 TGGCCGGAGAGGCAGAATACGTAAGTCTG-GG-TCTGGCTCGATTGCCCCTGCGTGCTATCGATC
130 CGGCCGAAGAGGCAAAATACGTAAGTC-GAGGATC-GGCCCGATCGCCCCTGCGTGCTATCGATC
* * * * *
19020942 CTGCTACCGCAACACTC-AGTCCG-GTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
193 CTACTACCACAACACTCGA-TCCGACT-CGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAG
* * * * * * *
19021004 TCAACCCATAAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGAGGCATAATGCGCAAG-TCA-GG
255 CCAACCCACAAAACGAGCGTGCGGGCACTCAACCAGCCAGAGAGGCAGAATGCGCAAGCT-AGGG
* * * * *
19021067 ATCGACTCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTT-GGTCCGGCTGGGGC
319 ATCGACCCGATCCCCCTCTGCGTCCTGCCGGTCCCGCTGCCACAA-CCTTCGATCCGGCTGGGGC
* * * *
19021131 TTAGGCATGGAATGAACTCCCTAATGCCTAAGCCACCCCCCGAAATGTGCGTGTGGCGCACTCAG
383 TTAGACATGGAATGAACTCCCT-ATGCCTAAGCCAACCCACGAAACGTGCGTGTGGCGCACTCAG
** * *
19021196 CCGCTGGAGAGGCAGAATGCGTAAGTCGGGGAATCAGCCCGATCCC
447 CCGCCAGAGAGGCAAAATGCGCAAGTCGGGGAATCAGCCCGATCCC
19021242 CCTGCGTGCT
Statistics
Matches: 413, Mismatches: 68, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
513 79 0.19
514 311 0.75
515 23 0.06
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (515 bp):
TGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCATATGC
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAGCC
GGCCGAAGAGGCAAAATACGTAAGTCGAGGATCGGCCCGATCGCCCCTGCGTGCTATCGATCCTA
CTACCACAACACTCGATCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACAAAACGAGCGTGCGGGCACTCAACCAGCCAGAGAGGCAGAATGCGCAAGCTAGGGATCGACC
CGATCCCCCTCTGCGTCCTGCCGGTCCCGCTGCCACAACCTTCGATCCGGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGTGGCGCACTCAGCCGCCAGAG
AGGCAAAATGCGCAAGTCGGGGAATCAGCCCGATCCCTCCCTGTGTGCAATCGATGCTGC
Found at i:19022047 original size:26 final size:26
Alignment explanation
Indices: 19022018--19022070 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19022008 CCGGTCCAAT
19022018 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
19022044 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
19022070 C
1 C
19022071 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:19022119 original size:194 final size:196
Alignment explanation
Indices: 19021822--19022176 Score: 470
Period size: 194 Copynumber: 1.8 Consensus size: 196
19021812 GTCCGATTAG
** * * * *
19021822 ATCTTAGACTAGGAATGAACTCTGTATTCTTAGACTGGGGATTAACTCCATATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
* * *
19021887 CCACGAAATGAGTGTACGGGCGTTCAGCCGACCGGAGAGG-TAGAATGCACAAG-CTAGGGATCG
66 CCACAAAACGAGCGTACGGGCGTTCAGCCGACCGGAGAGGCT-GAATGCACAAGTC-AGGGATCG
19021950 ACCCGAT-C-CCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATTGCAACCCTTGGTCCGGT
129 ACCCGATCCTCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATTGCAACCCTTGGTCCGGT
19022013 CCA
194 CCA
*
19022016 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
1 ATCTTAGACTAGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAA
* * ** *
19022080 CCGACAAAACGAGCGTACGGGCGCTT-AGTCGGTCGGAGAGGCTGAATGCATAAGTCAGGGATCG
65 CCCACAAAACGAGCGTACGGGCG-TTCAGCCGACCGGAGAGGCTGAATGCACAAGTCAGGGATCG
* **
19022144 ACCCGGTCCTCCCTGTGTGCTGTCGATCCTGCT
129 ACCCGATCCTCCCTACGTGCTGTCGATCCTGCT
19022177 ATCGCAACCC
Statistics
Matches: 137, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
194 110 0.80
195 6 0.04
196 21 0.15
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (196 bp):
ATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
CCACAAAACGAGCGTACGGGCGTTCAGCCGACCGGAGAGGCTGAATGCACAAGTCAGGGATCGAC
CCGATCCTCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATTGCAACCCTTGGTCCGGTCC
A
Found at i:19023583 original size:26 final size:26
Alignment explanation
Indices: 19023537--19023589 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19023527 CCAGTTCGAT
* *
19023537 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19023563 CTTAGACTGTGG-ATAAACTCCGTATG
1 CTTAGACTG-GGAATAAACTCCGTATG
19023589 C
1 C
19023590 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19024645 original size:184 final size:183
Alignment explanation
Indices: 19024455--19024824 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 183
19024445 TTCGGTTGGG
* * * *
19024455 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAA
* * *
19024520 CCGGTCGAAGAGGCAGAATGTG-CAAGCCGAGGA-TCGGCCCGATCCCCCCTGTGTGCTACCTAT
66 CCGATCGAAGAGGCAGAAT-TGACAAGCCG-GGACT-GGCCCGATCCCCCCTATGTGCTACCGAT
** ***
19024583 CCTGGTGCCACAACCCTCGGTCTGGTACGATCTTAGACTAGGAATGAACTCCGTAT
128 CCTACTGCCACAACCCTCGGTCCAATACGATCTTAGACTAGGAATGAACTCCGTAT
* *
19024639 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAA
* * * * * **
19024704 TCGATCGGAGAGGCAGAATTGCACAAGCTGGGACTGGCCCGGTCCCTCCTATGTGCTGTCGATCC
66 CCGATCGAAGAGGCAGAATTG-ACAAGCCGGGACTGGCCCGATCCCCCCTATGTGCTACCGATCC
** * *
19024769 TACTGCTGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTAT
130 TACTGCCACAACCCTCGGTCCAATACGATCTTAGACTAGGAATGAACTCCGTAT
19024823 GC
1 GC
19024825 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 2 0.01
184 149 0.94
185 7 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAA
CCGATCGAAGAGGCAGAATTGACAAGCCGGGACTGGCCCGATCCCCCCTATGTGCTACCGATCCT
ACTGCCACAACCCTCGGTCCAATACGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:19024652 original size:26 final size:26
Alignment explanation
Indices: 19024614--19024666 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19024604 CTGGTACGAT
19024614 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19024640 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
19024666 C
1 C
19024667 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19025156 original size:26 final size:26
Alignment explanation
Indices: 19025118--19025167 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19025108 ATTAGATCTT
19025118 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
* *
19025144 AGACTGGGGATGAACTCTGTATGC
1 AGACTGGGAATGAACTCCGTATGC
19025168 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:19025427 original size:196 final size:196
Alignment explanation
Indices: 19025112--19025471 Score: 481
Period size: 196 Copynumber: 1.8 Consensus size: 196
19025102 AGTTCGATTA
* * *
19025112 GATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** *
19025177 CCCATAAAATGAGCGTGCGGGTGCACAGCTGGCTGGAGAGACAGAATGCACAAGCCGA-AGATCG
66 CCCATAAAACGAGCGTGCGGGCGCACAACCGACCAGAGAGACAGAATACACAAGCC-ATAGATCG
19025241 GCCCGATCCCCCCTACGTGCTATCGATCCTGCTACTGGTCCTACTATCGCAACCCTTGATCCGAA
130 GCCCGATCCCCCCTACGTGCTATCGATCCTGCTACTGGTCCTACTATCGCAACCCTTGATCCGAA
19025306 TC
195 TC
* *
19025308 GATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTCAGAC-TGGGAATGAACTCCGTATGCCTAAGCCA
* ** ** *
19025372 ACCCATGAAACGAGCGTGCGGGCGTTCAACCGACCAGAGAGGTAGAATACACAAGCCATGGATCG
65 ACCCATAAAACGAGCGTGCGGGCGCACAACCGACCAGAGAGACAGAATACACAAGCCATAGATCG
** * *
19025437 GCCCGATCCCCCCTGTGTGCTGTCGATCCTTCTAC
130 GCCCGATCCCCCCTACGTGCTATCGATCCTGCTAC
19025472 CGCAACCCTC
Statistics
Matches: 139, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
195 1 0.01
196 137 0.99
197 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (196 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCCATAAAACGAGCGTGCGGGCGCACAACCGACCAGAGAGACAGAATACACAAGCCATAGATCGG
CCCGATCCCCCCTACGTGCTATCGATCCTGCTACTGGTCCTACTATCGCAACCCTTGATCCGAAT
C
Found at i:19025595 original size:697 final size:679
Alignment explanation
Indices: 19024610--19026556 Score: 2061
Period size: 697 Copynumber: 2.9 Consensus size: 679
19024600 CGGTCTGGTA
19024610 CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 CGATCTTAGACT-GGAATGAACTCCGT-TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* ** * * *
19024675 ACCCATGAAACGAGCGTGCGAGAGCTCAGTCGATCGGAGAGGCAGAATTGCACAAG-CTGGGACT
64 ACCCATGAAACGAGCGTGCGGGAGCTCAACCGAACAGAGAGGTAGAA-TGCACAAGCCT-GGAC-
* * * *
19024739 GGCCCGGTCCCTCCTATGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCCAATCCGATCTTAGA
126 GGCCCGATCCCCCCTATGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGA
* * * * * *
19024804 CTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCAGGCGTTGAGCCGGCCA
191 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGAGCCAGCCG
* * * *
19024869 GAGAGTCATAATGCGCAAGTCGGGGATCGGCCTAGTCCTCCTCTGCATGCTGCCAGTCCCGTTAC
256 GAGAGGCATAATGCGCAAGTCGGGGATCGGCC-AGTCC-CCTCTGCGTGCTACC-GTCCCGCTAC
** * * *
19024934 CACAACCCTCAATCCGACGGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
318 CACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
19024999 AAACAGGCGTGCGGGCACTCAACCGGCCAAAGAGGCAGAATGCGCAAGTCGGGGATCGGTTCGGT
383 AAACAGGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGTTCGGT
* *
19025064 CCGCCCTGCGTGCTATCGATCTTACTGCTGCAACCCTCAGTTCGATTAGATCTTAGACTGGGAAT
448 CC-CCCTGCGTGCTACCGATCTTGCTGCTGCAACCCTC-GTTCGATTAGATCTTAGACTGGGAAT
* * * *
19025129 GAACTCCGTATGCTCAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAATGAGCGTG
511 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* *
19025194 CGGGTGCAC-AGCTGG-CTGGAGAGACAGAATGCACAAGCC-GAAGATCGGCCCGATCCC-CCCT
576 CGGGTGCACAATC-GGTC-GGAGAGACAGAATGCACAAGCCAG-AGATCAGCCCGATCCCTCCCT
* * * * *
19025255 ACGTGCTATCGATCCTGCTACTGGTC-CTACTATCGCAACCCTTGATCCGAAT
638 ACATGCTACCGATCC--C-ACT-GTCGCTAATATCGC--CAC---AACC--AT
19025307 CGATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 CGATCTTAGACT-GGAATGAACTCCGT-TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * *
19025372 ACCCATGAAACGAGCGTGCGGGCGTTCAACCGACCAGAGAGGTAGAATACACAAGCCATGGATCG
64 ACCCATGAAACGAGCGTGCGGGAGCTCAACCGAACAGAGAGGTAGAATGCACAAGCC-TGGA-CG
* * * * **
19025437 GCCCGATCCCCCCTGTGTGCTGTCGATCCTTCTACCGCAACCCTCAGTCCGGCCCGATCTTAGAC
127 GCCCGATCCCCCCTATGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGAC
* * *
19025502 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTTCGGGCGTTGAGCCAACCGG
192 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGAGCCAGCCGG
* * * * *
19025567 AGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCGCTACC
257 AGAGGCATAATGCGCAAGTCGGGGATCGGCCAG-T-CCCCTCTGCGTGCTA-CCGTCCCGCTACC
* ** * * *
19025632 ACAACCGTCGGTTTGGCTAGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCTACCCACGA
319 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * * * *
19025697 AATAGGTGTGCAGGCGCTTAGCCGGTCGGAGAGGTAGAATACGCAAGCCGGGGATCGGTTCTGTC
384 AACAGGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGTTCGGTC
* * * **
19025762 CTCCTTCATGCTACCGAT-TCTGCTGCTGCAA-CC-C-TT-G-TCCGATCTTAGACTGGGAATGA
449 CCCCTGCGTGCTACCGATCT-TGCTGCTGCAACCCTCGTTCGATTAGATCTTAGACTGGGAATGA
* * *
19025821 ACTCCATATGCTTAGACTGGGGATGAAGTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-
513 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
* * * ** * * *
19025885 GGTGCTCAATCGGTCGGAGAGGCATAATGTGCAAGCCAGGGATCAGCCCGATCCCTCTCTGCATG
578 GGTGCACAATCGGTCGGAGAGACAGAATGCACAAGCCAGAGATCAGCCCGATCCCTCCCTACATG
* * * * *
19025950 CTGCCGATCCCACTGTCGGTAATGTTGCCACAACCCT
643 CTACCGATCCCACTGTCGCTAATATCGCCACAACCAT
* * *
19025987 CGATC-CAG-CT-G---G------G--GCTTAGACTTAGAATGAACTCCGTATGCCTAAGCCAAC
1 CGATCTTAGACTGGAATGAACTCCGTTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
19026038 CCACGAAATGAGTGTGCGGGTGCTCAACCGAACAGAGAGGTAGAATGCACAAGCCGGGGAC-CCA
66 CCATGAAACGAGCGTGCGGGAGCTCAACCGAACAGAGAGGTAGAATGCACAAGCC-TGGACGGC-
** * *
19026102 CCGATCCCCCCTACATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTG
129 CCGATCCCCCCTATGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTG
* * * *
19026167 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTGAGCCAGTCGAAG
194 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGAGCCAGCCGGAG
* * *
19026232 ATGCATAATGCGCAAGTCGGGGATCGGTCC-GATCCCTCTCTGCGTGTTACCGATCCCACTACCA
259 AGGCATAATGCGCAAGTCGGGGATCGG-CCAG-TCCC-CTCTGCGTGCTACCG-TCCCGCTACCA
*
19026296 CAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
320 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * * * * * * *
19026361 ACGGGCGTGCAGACGCTCAGCCGACTGTAGAGGTAAAATGTGCGAGTCAGGGATCAGCT-GGTTC
385 ACAGGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGTTCGG-T-
* * * * *
19026425 CCCCCTGCGTGCTACCGATGC-TGCTACCGTAACCCTCGGTCTGATCTA-ATTTTAGA-TCGGGA
448 CCCCCTGCGTGCTACCGAT-CTTGCTGCTGCAACCCTCGTTC-GAT-TAGATCTTAGACT-GGGA
*
19026487 ATGAACTCCGTATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
509 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
19026552 TGCGG
574 TGCGG
19026557 ACACTCAACC
Statistics
Matches: 1049, Mismatches: 172, Indels: 84
0.80 0.13 0.06
Matches are distributed among these distances:
662 7 0.01
663 263 0.25
664 113 0.11
665 2 0.00
666 1 0.00
667 2 0.00
669 2 0.00
670 76 0.07
671 1 0.00
673 1 0.00
676 1 0.00
678 2 0.00
679 2 0.00
680 6 0.01
682 3 0.00
685 2 0.00
686 3 0.00
687 9 0.01
688 1 0.00
689 40 0.04
690 95 0.09
691 1 0.00
692 2 0.00
694 1 0.00
695 3 0.00
696 31 0.03
697 374 0.36
698 5 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (679 bp):
CGATCTTAGACTGGAATGAACTCCGTTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGAGCTCAACCGAACAGAGAGGTAGAATGCACAAGCCTGGACGGCCC
GATCCCCCCTATGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGAGCCAGCCGGAGAG
GCATAATGCGCAAGTCGGGGATCGGCCAGTCCCCTCTGCGTGCTACCGTCCCGCTACCACAACCC
TCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGC
GTGCAGGCGCTCAGCCGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGTTCGGTCCCCCTGC
GTGCTACCGATCTTGCTGCTGCAACCCTCGTTCGATTAGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCACA
ATCGGTCGGAGAGACAGAATGCACAAGCCAGAGATCAGCCCGATCCCTCCCTACATGCTACCGAT
CCCACTGTCGCTAATATCGCCACAACCAT
Found at i:19025699 original size:159 final size:158
Alignment explanation
Indices: 19025336--19025700 Score: 417
Period size: 158 Copynumber: 2.3 Consensus size: 158
19025326 AACTCCGTCT
* **
19025336 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGTTCAA
* * * *
19025401 CCGACCAGAGAGGTAGAATACACAAGCCATGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCC
66 CCAACCAGAGAGGCAGAATACACAAGCCATGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
** * *
19025466 TTCTACCGCAACCCTCAGTCCGGCCCGA
131 CGCTACCACAACCCTCAGTCCGGCCAGA
* * * * * *
19025494 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTTCGGGCGTTGAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGTTCAA
* * * ** *
19025559 CCAACCGGAGAGGCATAATGCGTAAGCCGA-GGATCGGCCCGATCCCCCTCTGCGTGCTATCGGT
66 CCAACCAGAGAGGCAGAATACACAAGCC-ATGGATCGGCCCGATCCCCC-CTGCGTGCTATCGAT
* * ** * *
19025623 CCCGCTACCACAACCGTCGGTTTGGCTAGG
129 CCCGCTACCACAACCCTCAGTCCGGCCAGA
* * *
19025653 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCTACCCACGAAATA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATA
19025701 GGTGTGCAGG
Statistics
Matches: 170, Mismatches: 35, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
158 95 0.56
159 75 0.44
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGTTCAA
CCAACCAGAGAGGCAGAATACACAAGCCATGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
CGCTACCACAACCCTCAGTCCGGCCAGA
Found at i:19025841 original size:26 final size:26
Alignment explanation
Indices: 19025805--19025857 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19025795 CTTGTCCGAT
19025805 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
19025831 CTTAGACTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19025857 C
1 C
19025858 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19027236 original size:26 final size:26
Alignment explanation
Indices: 19027198--19027250 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19027188 GGCTCAAACT
19027198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19027224 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19027250 C
1 C
19027251 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19027565 original size:26 final size:26
Alignment explanation
Indices: 19027536--19027588 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19027526 TCAGTCCGAT
19027536 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
19027562 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
19027588 C
1 C
19027589 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:19027773 original size:26 final size:26
Alignment explanation
Indices: 19027744--19027794 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19027734 CCAGTCCGAT
19027744 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19027770 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
19027795 CCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Done.