Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 173 of 402
Found at i:19028936 original size:156 final size:157
Alignment explanation
Indices: 19028596--19028936 Score: 362
Period size: 156 Copynumber: 2.2 Consensus size: 157
19028586 CGGTCCGATA
* * * *
19028596 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGTTGAGCC
1 TTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCG-ACGGGCGGTCAGCC
* * *
19028661 TGCCGGAGAGGCATAATGCGCAAGCCGGGGATAGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCC
64 GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATAGGCCCGATCCCCCTCTGCGTGCTGCCGATCCC
* * * * ****
19028726 ATTGCCACAACCCTCGGTCCAGTTGGGGC
129 ACTACCACAACCCTCGATCCAATCCAAGC
* **
19028755 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCG-CGGGCGGTCAGCCG
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGACGGGCGGTCAGCCG
* * * * * * *
19028819 GTCGGAGAGGTAAAATGCGCATGCCGGGGATCGGTCCGGTCCCCC-CTGCGTGCTGCCGATCCTA
65 GCCGGAGAGGCAAAATGCGCAAGCCGGGGATAGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCA
** * *
19028883 CTACCGTAACCCTCGATTCAATCCAATC
130 CTACCACAACCCTCGATCCAATCCAAGC
*
19028911 TTAGACTGAGAATGAACTCAGTATGC
1 TTAGACTG-GAATGAACTCCGTATGC
19028937 TTAGACTAGG
Statistics
Matches: 149, Mismatches: 31, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
155 2 0.01
156 54 0.36
157 49 0.33
159 43 0.29
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
TTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGACGGGCGGTCAGCCGG
CCGGAGAGGCAAAATGCGCAAGCCGGGGATAGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCAC
TACCACAACCCTCGATCCAATCCAAGC
Found at i:19030182 original size:26 final size:24
Alignment explanation
Indices: 19030145--19030194 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
19030135 GCTCGGTCCG
19030145 GTTTGATCTTAGAC-TGGGAATGAA
1 GTTTGATCTTAGACAT-GGAATGAA
19030169 GTTTGTATGCTTAGACATGGAATGAA
1 GTTTG-AT-CTTAGACATGGAATGAA
19030195 CTCCGTATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 15 0.65
27 1 0.04
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (24 bp):
GTTTGATCTTAGACATGGAATGAA
Found at i:19030624 original size:159 final size:156
Alignment explanation
Indices: 19030177--19030625 Score: 436
Period size: 159 Copynumber: 2.8 Consensus size: 156
19030167 AAGTTTGTAT
*
19030177 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * *
19030242 CCGGCCAGAGAGGCAGAATGCACAAGCCGAGGATTGTCTCGATCCTCACCTGCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCACAAG-CGAGGATCGTCCCG-TCC-CCCCTGCGTGCTGTCGATC
* * * *
19030307 CTGCTATCACAACACTTGATCTGATCTGA
128 CCGCTACCACAACACTCGATCCGATCTGA
* ** * * * *
19030336 TCTTTTAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * * **
19030400 GCTGGTCGGAGAGGCATAATGCATAAGCCAGGGATCGTCCCGGTCCCCCTCTGCATGCTACCGAT
65 GCCGGCCGGAGAGGCAGAATGCACAAGCGA-GGATCGTCCC-GTCCCCC-CTGCGTGCTGTCGAT
* * * * *
19030465 CCCGCTGCCACAACCCTCGGTCCGGT-TGGG
127 CCCGCTACCACAACACTCGATCCGATCT-GA
* * *
19030495 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACCATG-GTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTACGGGCGCTCA
* * * * *
19030559 GCCAGCCGGAGTGGCAGAATGCGCAAGTCGAGGATCGACCCAGTCCCCTCCTGCGTACTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCACAAG-CGAGGATCGTCCC-GTCCCC-CCTGCGTGCTGTCGAT
19030624 CC
127 CC
19030626 TACTACTGGT
Statistics
Matches: 229, Mismatches: 52, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
158 6 0.03
159 217 0.95
160 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCGAGGATCGTCCCGTCCCCCCTGCGTGCTGTCGATCCCG
CTACCACAACACTCGATCCGATCTGA
Found at i:19030696 original size:26 final size:26
Alignment explanation
Indices: 19030667--19030719 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19030657 CCGATCTGAT
19030667 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
19030693 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
19030719 C
1 C
19030720 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:19030992 original size:158 final size:158
Alignment explanation
Indices: 19030693--19031143 Score: 395
Period size: 158 Copynumber: 2.9 Consensus size: 158
19030683 ACTCTGTATG
* * *
19030693 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTGCTCAAC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAAGAAACAAGCGTACGAGCGCTCAAC
* *
19030758 CGGCCAGAGAGGCAGAATGTGCAAGCCAGGGACCAGCCTGATCCCCTCTGTGTGCTGTCGATCCT
66 CGACCAGAGAGGCAGAATGTGCAAGCCAGGGACCAGCCTGATCCCCTCTGCGTGCTGTCGATCCT
*
19030823 ACTACCGCAACCCTCGATCCGGTCTGAT
131 ACTACCACAACCCTCGATCCGGTCTGAT
* * *
19030851 CTTAGAC-TGGAAATGAAC-TC-TATAAGCCTAAGTCAACCCAAGAAACAAGCGTGC-AGCGCTG
1 CTTAGACATGG-AATGAACTTCGTAT--GCCTAAGCCAACCCAAGAAACAAGCGTACGAGCGCTC
* * *
19030912 AACCGACCGGAGAGGCATAATGTGCAAGCC-GAGGATC-GACCTGATGCCCCTCTGCGT-CT-TA
63 AACCGACCAGAGAGGCAGAATGTGCAAGCCAG-GGACCAG-CCTGAT-CCCCTCTGCGTGCTGT-
* * * * **
19030973 CCGATACC-GCTGCCACAACCCTCGGTCC-GACTGGGG
124 -CGAT-CCTACTACCACAACCCTCGATCCGGTCT-GAT
* * * * * * * *
19031009 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAA-CGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAAGAAAC-AAGCGTACGAGCGCTCAA
* * * * * * * * *
19031073 TCGACCGGAGAGCCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCC-CTGCGTGCTGTCGATCC
65 CCGACCAGAGAGGCAGAATGTGCAAGCCAGGGACCAGCCTGATCCCCTCTGCGTGCTGTCGATCC
*
19031137 TGCTACC
130 TACTACC
19031144 GTAACTCTCG
Statistics
Matches: 240, Mismatches: 33, Indels: 41
0.76 0.11 0.13
Matches are distributed among these distances:
156 8 0.03
157 66 0.28
158 114 0.47
159 47 0.20
160 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAAGAAACAAGCGTACGAGCGCTCAAC
CGACCAGAGAGGCAGAATGTGCAAGCCAGGGACCAGCCTGATCCCCTCTGCGTGCTGTCGATCCT
ACTACCACAACCCTCGATCCGGTCTGAT
Found at i:19031195 original size:26 final size:26
Alignment explanation
Indices: 19031166--19031218 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19031156 CTGGTTCAAT
*
19031166 CTTAAACTGGGAATGACCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
19031192 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
19031218 C
1 C
19031219 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:19033080 original size:26 final size:26
Alignment explanation
Indices: 19033041--19033092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19033031 TGCCTCAAAA
19033041 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
19033067 TCTTAGACAT-GGAATGAACTTCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
19033093 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:19033371 original size:604 final size:592
Alignment explanation
Indices: 19032202--19033338 Score: 1410
Period size: 604 Copynumber: 1.9 Consensus size: 592
19032192 AATCTCAAAC
* *
19032202 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGATGGATAGGGGGCCAATATAAGAGCCAAG
1 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCGGCCAATATAAGAGCCAAG
19032267 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCATCAGAACCCCTAAT
66 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCATCAGAACCCCTAAT
19032332 GCCACCGATTAGGCTCTCCGATGATGCTCCGACGATGGTGCCCCAGGAGAAAAAAATGTAGCACC
131 GCCACCGATTAGGCTCTCCGATGATGCTCCGACGATGGTGCCCCAGGAGAAAAAAATGTAGCACC
* * * *
19032397 AGCACATGCCCAAGCCCAGCTTGTGCATCGTGGCTCAAACTCTTAGACTGGGAATGAACTCCGTA
196 AGCACATGCCCAAGCCCAGCATGTGCATCATGCCTCAAAATCTTAGACTGGGAATGAACTCCGTA
* * * *
19032462 TGCTTAGTCATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCA
261 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* ** * *
19032527 GCCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCATTCCCCCTCTGTGTGCTGTCGAA
326 GCCGACCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCAGTCCCCCTCTATGTGCTGTCG-A
* * *
19032592 ACCGCTGCCAAAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
390 ACCGCTGCCAAAACCCTCGATCCGGCTCGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCC
* * * * ** * * *
19032657 AACCCACGAAACGGGTGTGCGGGTGCTCAGCCTACCGGAGAGGCAGAATGTGCAAGCCGGGGATC
455 AACCCACAAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATC
* * * *
19032722 AGCCCGGTCCCCCTTGCGTGCTACCAACCCTGCTACCGCAACCCTCGATCTGATTCAATCTTACA
520 AGCCCAGTCCCCCTTGCGAGCTACCAACCCTACTACCACAACCCTCGATCTGATTCAATCTTACA
19032787 CTGGGAAT
585 CTGGGAAT
* *
19032795 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTTATGAGGGATAGGCGGCCAATATAAGGGCCAAG
1 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCGGCCAATATAAGAGCCAAG
* * * *
19032860 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGTCCCCCCAATCGTCGGAA-CCTTAA
66 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCAATCATCAGAACCCCTAA
* * *
19032924 TGTCGCCGGTTAGGCTCTCCAGCGATGCTCTGGCATTGCTCCGACGATGGTGCCCCAGGCA-AAA
130 TGCCACCGATTAGGCTCT-C--CGA-----T-G-A-TGCTCCGACGATGGTGCCCCAGG-AGAAA
* * *
19032988 AAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCATCATGCCTCAAAATCTTAGACTGGG
183 AAAATGTAGCACCAGCACATGCCCAAGCCCAGCATGTGCATCATGCCTCAAAATCTTAGACTGGG
* * * *
19033053 AATGAACTCCGTATTCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAGGAGC
248 AATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
* *
19033118 ATGCGGGCACTCTGCCGACCGAAGAGGCAGAATGCACAAG-CTGGGGATCGGCCCGGTCCCCC-C
313 ATGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCACAAGTC-GGGGATCGGCCCAGTCCCCCTC
* * * * * * * * *
19033181 TATGTGCTGTTG-ATC-CTGCTAATGCAACCCTTGGTTC-GATCCGATCTTAGGC-TGAGAATGA
377 TATGTGCTGTCGAACCGCTGCCAA---AACCCTCGATCCGGCT-CGAGCTTAGACATG-GAATGA
* * * * * * *
19033242 ACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGCACTGAGCCGGCC-GAGGAGGTAT
437 ACTCCCTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGACCGGA-GAGGCAG
* **
19033306 AATGCGTAAGCCAGGGATTGGCCCAGTCCCCCT
501 AATGCGCAAGCCAGGGATCAGCCCAGTCCCCCT
19033339 CTGTGAGTTA
Statistics
Matches: 459, Mismatches: 65, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
593 119 0.26
594 17 0.04
596 3 0.01
600 6 0.01
601 3 0.01
602 7 0.02
603 108 0.24
604 195 0.42
605 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (592 bp):
GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCGGCCAATATAAGAGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCATCAGAACCCCTAAT
GCCACCGATTAGGCTCTCCGATGATGCTCCGACGATGGTGCCCCAGGAGAAAAAAATGTAGCACC
AGCACATGCCCAAGCCCAGCATGTGCATCATGCCTCAAAATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
GCCGACCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCAGTCCCCCTCTATGTGCTGTCGAA
CCGCTGCCAAAACCCTCGATCCGGCTCGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCCA
ACCCACAAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCA
GCCCAGTCCCCCTTGCGAGCTACCAACCCTACTACCACAACCCTCGATCTGATTCAATCTTACAC
TGGGAAT
Found at i:19034080 original size:26 final size:26
Alignment explanation
Indices: 19034051--19034103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19034041 CTAGTTTGAT
19034051 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
19034077 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19034103 C
1 C
19034104 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19035212 original size:26 final size:26
Alignment explanation
Indices: 19035176--19035226 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19035166 CCAGTTCGAT
19035176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19035202 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19035227 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19042280 original size:26 final size:26
Alignment explanation
Indices: 19042242--19042294 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19042232 GGCTCAAAAT
19042242 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
19042268 CTTAGACTT-GGAATGAACTCCGTATG
1 CTTAGA-TTGGGAATGAACTCCGTATG
19042294 C
1 C
19042295 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:19042569 original size:158 final size:157
Alignment explanation
Indices: 19042268--19042773 Score: 378
Period size: 158 Copynumber: 3.2 Consensus size: 157
19042258 ACTCCGTATG
* * * * * * * * * *
19042268 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTACAGGCGCTCAGC
1 CTTAGAATGGGAATGAACCCCATATG-CTTAGCCAACCCACAAAACGAGCGTACGGGCGCTCAAC
* * * * * * * ** ****
19042333 CGACCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGTCCGGTCCCCTCCTATGTGTTGTC-ATTC
65 CAATCGAAGAGGCAGAATGAGCAAGTCGGGGATCGGCCCGATCCCC-CCTGCGTGCCACCGA-TC
* **
19042397 CTGCTACTGCAACCCTCGATCC-GTCCT-AT
128 CCGCTACCACAACCCTCGATCCAGT-CTGAT
* * *** *
19042426 CTTAGATTGGGAATGAACCCCATATGCATTAGTCAACCCGTGAAACGAGCGTACGGGCGCT-AAG
1 CTTAGAATGGGAATGAACCCCATATGC-TTAGCCAACCCACAAAACGAGCGTACGGGCGCTCAAC
* * * *
19042490 CAAGTCGAAGAGGCATAATGAGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTC
65 CAA-TCGAAGAGGCAGAATGAGCAAGTCGGGGATCGGCCCGATCCCCC-CTGCGTGCCACCGATC
** ** **
19042555 CCGCTGTCGGAACCCTCGATCCAG-CTGGGG
128 CCGCTACCACAACCCTCGATCCAGTCT-GAT
* * * *
19042585 CTTAGACAT-GGAATTAACTCCC-TATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCA
1 CTTAGA-ATGGGAATGAAC-CCCATATG-CTTAGCCAACCCACAAAACGAGCGTACGGGCGCTCA
* * *
19042648 ACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCCACCGATC
63 ACCAATCGAAGAGGCAGAATGAGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCCACCGATC
* *
19042713 CTGCTACCACAACCCTCAATCCAGTCTGAT
128 CCGCTACCACAACCCTCGATCCAGTCTGAT
* * *
19042743 CTTAGACTGGGAATGAACTCGATATGCTTAG
1 CTTAGAATGGGAATGAACCCCATATGCTTAG
19042774 ACTGGGGATG
Statistics
Matches: 271, Mismatches: 63, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
157 13 0.05
158 162 0.60
159 87 0.32
160 9 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACCCCATATGCTTAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACC
AATCGAAGAGGCAGAATGAGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCCACCGATCCCG
CTACCACAACCCTCGATCCAGTCTGAT
Found at i:19045477 original size:159 final size:158
Alignment explanation
Indices: 19045161--19045951 Score: 690
Period size: 159 Copynumber: 5.0 Consensus size: 158
19045151 AATGAACCCT
* * * * * *
19045161 GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGA-TCGGAGAGGTAAAATGC
1 GTATGCCTAAGCCAACCCATGAAATCAGTGTTCGGGTGCTCAACCGACT-GGAGAGGCAGAATGC
* * * * *
19045225 GTAAGCCAGGGACCGGCCCGATCCCCCCTACGTGCTGTCGTTCCTGCTGTCGCAACCCTCAGTCC
65 GCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCC
*
19045290 GGTCCGATCTTACACTGGGAATGAACTAC
130 GGTCCGATCTTAGACTGGGAATGAACTAC
* * *
19045319 GTATGCCTAAGTCAACCCATGAAATCAGTGTTCGGGTGCTGAACCGACTGGAGAGGCATAATGCG
1 GTATGCCTAAGCCAACCCATGAAATCAGTGTTCGGGTGCTCAACCGACTGGAGAGGCAGAATGCG
*
19045384 CAAGCCAGGGATCGGCCCGATCCCTCCCTACGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCC
66 CAAGCCAGGGATCGGCCCGATCCC-CCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCC
*
19045449 GGTCCGATCTTACACTGGGAATGAACTAC
130 GGTCCGATCTTAGACTGGGAATGAACTAC
* * * *
19045478 GTATGCCTAAGTCAACCCACGAAATCAGCGTTCGGGTGCT-AAGCC-AGCTGGAGAGGCATAATG
1 GTATGCCTAAGCCAACCCATGAAATCAGTGTTCGGGTGCTCAA-CCGA-CTGGAGAGGCAGAATG
* *** * * * * * *
19045541 CGCAAGCCAGGGATCGGCCCGATCCCCCTCTTCCCACTGGCGGTCTTGCTACCACAACCATCTGT
64 CGCAAGCCAGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGT
* * ** *
19045606 CC-GACTGGGGCTTAGACAT-GGAATGAACTCC
128 CCGGTC-CGATCTTAGAC-TGGGAATGAACTAC
* * * *
19045637 GTATGCCTAAGCCAACACATGAAA-CGAGCATG-T-GGGCGCTCAATCGACTAGAGAGGCAGAAT
1 GTATGCCTAAGCCAACCCATGAAATC-AG--TGTTCGGGTGCTCAACCGACTGGAGAGGCAGAAT
** * * * * *
19045699 GCGCAAGCTGGGGATCAGCCC-AGTCCCCCCCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCG
63 GCGCAAGCCAGGGATCGGCCCGA-T-CCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCA
** ** * *
19045763 GTCCGGTTAGGGCTTAGACAT-GGAATCAACTCC
126 GTCCGGTCCGATCTTAGAC-TGGGAATGAACTAC
* * * * *
19045796 TTATGCCTAAGCCAACCCACGAAA-CAAGCT-TGCGGGGGCTCAGCC-AGCTGGAGAGGCAGAAT
1 GTATGCCTAAGCCAACCCATGAAATC-AG-TGTTCGGGTGCTCAACCGA-CTGGAGAGGCAGAAT
** * * ** * * *** *
19045858 GCATAAGCTAGGGATCGACCCGATCCCCCCTGTGTGCTGCCGATCCTACTGCTGTAACCCTCGGT
63 GCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGT
* * *
19045923 TCGGTCCGATCCTAGACAGGGAATGAACT
128 CCGGTCCGATCTTAGACTGGGAATGAACT
19045952 TCATATGCTT
Statistics
Matches: 526, Mismatches: 87, Indels: 40
0.81 0.13 0.06
Matches are distributed among these distances:
158 141 0.27
159 372 0.71
160 12 0.02
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GTATGCCTAAGCCAACCCATGAAATCAGTGTTCGGGTGCTCAACCGACTGGAGAGGCAGAATGCG
CAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCG
GTCCGATCTTAGACTGGGAATGAACTAC
Found at i:19045984 original size:26 final size:26
Alignment explanation
Indices: 19045935--19045985 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19045925 GGTCCGATCC
*
19045935 TAGACAGGGAATGAACTTCATATGCT
1 TAGACAGGGAATGAACTCCATATGCT
* * *
19045961 TAGACTGGGGATGAACTCCGTATGC
1 TAGACAGGGAATGAACTCCATATGC
19045986 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCATATGCT
Found at i:19047524 original size:26 final size:26
Alignment explanation
Indices: 19047473--19047525 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19047463 GGCTCAAACT
*
19047473 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
19047499 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACATATG
19047525 C
1 C
19047526 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:19048308 original size:26 final size:26
Alignment explanation
Indices: 19048279--19048328 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19048269 GTCCGATCTC
19048279 AGACTGCGAATGAACTCCGTATGCTT
1 AGACTGCGAATGAACTCCGTATGCTT
* *
19048305 AGACTGGGGATGAACTCCGTATGC
1 AGACTGCGAATGAACTCCGTATGC
19048329 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGCGAATGAACTCCGTATGCTT
Found at i:19049379 original size:158 final size:158
Alignment explanation
Indices: 19048876--19049433 Score: 516
Period size: 158 Copynumber: 3.5 Consensus size: 158
19048866 GCTTAGACAT
* * * * * *
19048876 GGAATGAACTCTGTACGCCTAAGCTAACCCATGAAACGAGCGTGCTGGCGCTCAGCC-AGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGA
* *** * * *
19048940 GA-GCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCC-CTGTGTGCTGTCGATCTTGCTGCCG
65 GAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCTCTACATGCTGTCGATCCTGCTACCA
* * *
19049003 TAACTCTCAGTTTGGTCTTATCTT-CGACTG
130 CAACCCTCAGTTT-GTCTGATCTTAC-ACTG
* ** * ** ** *
19049033 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTTGGGCGCTGAGTTGACTGGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * * ** *
19049098 AGGCATAATGTGCAAGCCGAGGATCGACCCGATCCCCCTCTACCTGCTACCGATCCCGCTACCAC
66 AGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCTCTACATGCTGTCGATCCTGCTACCAC
* * ** *
19049163 AACCCTCGGTTTGGCTGGGGCTTAGACAT-
131 AACCCTCAGTTTGTCT-GATCTTACAC-TG
* * * * *
19049192 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * *
19049257 AGGCAGAATGCACAAGTCGGGGACCGACCCAATCCCCCTC-ACATGCTGTCGATCCTACTACCAC
66 AGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCTCTACATGCTGTCGATCCTGCTACCAC
*
19049321 AACCCTCAGTTCGATCTGATCTTACACTG
131 AACCCTCAGTTTG-TCTGATCTTACACTG
* ** * * * *
19049350 GGAATGAACTTCGTATGCCTAAGTTAACCCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
*
19049415 AGGCAGGATGCGCAAGCCG
66 AGGCAGAATGCGCAAGCCG
19049434 TGGATCGAAC
Statistics
Matches: 312, Mismatches: 81, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
157 52 0.17
158 141 0.45
159 118 0.38
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
AGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCTCTACATGCTGTCGATCCTGCTACCAC
AACCCTCAGTTTGTCTGATCTTACACTG
Found at i:19049441 original size:317 final size:316
Alignment explanation
Indices: 19048866--19049441 Score: 708
Period size: 317 Copynumber: 1.8 Consensus size: 316
19048856 TACTCCGTAT
** * * * *
19048866 GCTTAGACATGGAATGAACTCTGTACGCCTAAGCTAACCCATGAAACGAGCGTGCTGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *** *
19048931 CCAGTCGGAGAGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTGTGTGCTGTCGATCTT
66 CCAGCCAGAGAGCAGAATGCACAAGCCGGGGACCGACCCAATCCCCCCTACATGCTGTCGATCCT
* * ** * * * *
19048996 GCTGCCGTAACTCTCAGTTTGGTCTTATCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
131 ACTACCACAACCCTCAGTTCGATCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* *** * * * ** * *
19049061 CCATGAAACGAGCGTTTGGGCGCTGAGTTGACTGGAAAGGCATAATGTGCAAGCCGAGGATCGAC
196 CCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGAC
19049126 CCGATCCCCCTCTACCTGCTACCGATCCCGCTACCACAACCCTCGGTTTGGCTGGG
261 CCGATCCCCCTCTACCTGCTACCGATCCCGCTACCACAACCCTCGGTTTGGCTGGG
* * *
19049182 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
*
19049247 CC-GACCAGAGAGGCAGAATGCACAAGTCGGGGACCGACCCAAT-CCCCCTCACATGCTGTCGAT
66 CCAG-CCAGAGA-GCAGAATGCACAAGCCGGGGACCGACCCAATCCCCCCT-ACATGCTGTCGAT
*
19049310 CCTACTACCACAACCCTCAGTTCGATCTGATCTTAC-ACTGGGAATGAACTTCGTATGCCTAAGT
128 CCTACTACCACAACCCTCAGTTCGATCTGATCTT-CGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
19049374 TAACCCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCCGTGGAT
192 CAACCCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAAAGGCAGAATGCGCAAGCCGAGGAT
19049439 CGA
257 CGA
19049442 ACGGGTGGTA
Statistics
Matches: 213, Mismatches: 43, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
315 1 0.00
316 69 0.32
317 142 0.67
318 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCAGCCAGAGAGCAGAATGCACAAGCCGGGGACCGACCCAATCCCCCCTACATGCTGTCGATCCT
ACTACCACAACCCTCAGTTCGATCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCATGCAGACGCTCAGTCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGAC
CCGATCCCCCTCTACCTGCTACCGATCCCGCTACCACAACCCTCGGTTTGGCTGGG
Found at i:19050401 original size:158 final size:158
Alignment explanation
Indices: 19050057--19050401 Score: 372
Period size: 159 Copynumber: 2.2 Consensus size: 158
19050047 AACTCCGTAT
* * * *
19050057 GCTTAGACATGGAATTAACTCCTTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCCCAA
* * * ** * * *
19050122 CCGGTCGGAGAGGTAGAATGCATAAGTCGAGGATTGGACTGGTCCACCTCTGTGTGCTGTCGGTC
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGACTGGTCCACCCCTGCGTGCTGTCGATC
* *
19050187 CCGCTGCCACAACCCTCGGTCCGACTGGG
130 CCGCTGCCACAACCCTCGGTCCGACTAGA
* * * *
19050216 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCCCAA
1 GCTTAGACATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCCCAA
* * * *
19050281 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CTCGGTCC-CCCCTGCGTGCTGTTGAT
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGACT-GGTCCACCCCTGCGTGCTGTCGAT
** * * *
19050344 CTTGCTGCCGCAACCCTCGGTCTGATTAGA
129 CCCGCTGCCACAACCCTCGGTCCGACTAGA
*
19050374 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCT-TATGC
19050402 TTAGATTGGG
Statistics
Matches: 154, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 61 0.40
159 91 0.59
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCCCAAC
CGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGACTGGTCCACCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCGACTAGA
Found at i:19050404 original size:26 final size:26
Alignment explanation
Indices: 19050375--19050427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19050365 CTGATTAGAT
*
19050375 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19050401 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19050427 C
1 C
19050428 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19050609 original size:26 final size:26
Alignment explanation
Indices: 19050571--19050623 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19050561 CAGGTCTGAT
19050571 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19050597 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19050623 C
1 C
19050624 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19050918 original size:158 final size:158
Alignment explanation
Indices: 19050756--19051097 Score: 348
Period size: 158 Copynumber: 2.2 Consensus size: 158
19050746 CGATCTAATG
* * * * * * *
19050756 TTAGACTGGGAATAAACTTTGTATGCCTAAATCAACCCACGAAACA-AGCATTCGGGGGCTGAGC
1 TTAGACTGGGAATGAACTTCGTATGCCTAAACCAACCCACGAAACAGA-CATACAGGCGCTCAGC
* ** * * * *
19050820 TGGCCGGAGAGGCATAATGTGCAAGCCGGGAATCGGCACGATCCCCTCTGCATGCTGTCGGTCCC
65 TGGCCGGAGAGGCAGAATGCACAAGCCGGGAATCGACACGATCCCCCCTGCATGCTGTCGATCCA
** * * *
19050885 GCTGCCACAACCCTCGGT-TTGGCTGGGTC
130 AATGCCAAAACCCTCGGTCTAGGCT-GATC
* * * * * * *
19050914 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTACAGGCGCTCAGT
1 TTAGAC-TGGGAATGAACTTCGTATGCCTAAACCAACCCACGAAACAGACATACAGGCGCTCAGC
* * * *
19050978 TGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCA
65 TGGCCGGAGAGGCAGAATGCACAAGCCGGGAATCGACACGATCCCCCCTGCATGCTGTCGATCCA
* *
19051043 AATGTCAAAACCCTCGGTCTAGTCTGATC
130 AATGCCAAAACCCTCGGTCTAGGCTGATC
19051072 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
19051098 TTAGACTAGG
Statistics
Matches: 146, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 139 0.95
159 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTTCGTATGCCTAAACCAACCCACGAAACAGACATACAGGCGCTCAGCT
GGCCGGAGAGGCAGAATGCACAAGCCGGGAATCGACACGATCCCCCCTGCATGCTGTCGATCCAA
ATGCCAAAACCCTCGGTCTAGGCTGATC
Found at i:19051122 original size:26 final size:26
Alignment explanation
Indices: 19051071--19051122 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19051061 CTAGTCTGAT
* *
19051071 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19051097 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
19051123 TATAACTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19051616 original size:158 final size:158
Alignment explanation
Indices: 19051296--19051799 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 158
19051286 AACTCCATAT
* * * ** * **
19051296 GCTTAGACAT-GGAATTAA-TCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCATACGGGCACTCA
* * * * * * * * * ** *
19051359 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGA-CCGATCTGATCCCCCCTGCGTGCTGTCAAT
65 GCCGACTGGAGAGACAGAATGCGCAAGCCGGAGATCGGCTC-GGTCCCCTCTGCGTGCTACCGAT
** ** * *
19051423 CCTACTGCCACAACCCTCGGTCTAGTCTGA
129 CCCGCTGCCACAACCCTCAATCTGGACTGA
* * ** ** *
19051453 TCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGTGTACGGGCGTTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCATACGGGCACTCAG
* * * * * *
19051518 CTGACTGGAGAGGCATAATGCGCAAGCC-GAGATCGGCTCGGTCCCCCTCTGTGTGCTGCCGGTC
66 CCGACTGGAGAGACAGAATGCGCAAGCCGGAGATCGGCTCGGT-CCCCTCTGCGTGCTACCGATC
*
19051582 CCGCTGCCACAACCCTCAATCT-GACTGGG
130 CCGCTGCCACAACCCTCAATCTGGACT-GA
* * * *
19051611 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCATACGGGCACTCA
* *
19051675 GCCGACTGGAGAGACAGAATGCGCAAGCCGGGGATTGGCTCGGTCCCCTCTGCGTGCTACCGATC
65 GCCGACTGGAGAGACAGAATGCGCAAGCCGGAGATCGGCTCGGTCCCCTCTGCGTGCTACCGATC
* * * * * *
19051740 CTGCTGTCGCAACCTTCAGTCTGGTCTGA
130 CCGCTGCCACAACCCTCAATCTGGACTGA
* *
19051769 TCTTAGACTGGGAATGAATTCCGTATGCTTA
1 GCTTAGACTGGGAATGAACTCCGTATGCTTA
19051800 GACTGGGGAT
Statistics
Matches: 279, Mismatches: 59, Indels: 17
0.79 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 23 0.08
158 239 0.86
159 16 0.06
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCATACGGGCACTCAG
CCGACTGGAGAGACAGAATGCGCAAGCCGGAGATCGGCTCGGTCCCCTCTGCGTGCTACCGATCC
CGCTGCCACAACCCTCAATCTGGACTGA
Found at i:19051648 original size:699 final size:695
Alignment explanation
Indices: 19050162--19051873 Score: 2130
Period size: 699 Copynumber: 2.5 Consensus size: 695
19050152 GGATTGGACT
* *
19050162 GGTCCACCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATG
1 GGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATG
* * * * *
19050227 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCCCAATCGGTCGGAGA
66 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGTCGGTCGGAGA
* * *
19050292 GGCAGAATGCGCAAGCCGGGGATC-AGCTCGGTCCCCCCTGCGTGCTGTTGATCTTGCTGCCGCA
131 GGCAGAATGCGCAAGCCGGGGATCGA-CTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCA
*
19050356 ACCCTCGGTCTGAT-TAGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGATTGGGGATGAAC
195 ACCCTCGGTCTG-TCT-GATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGGATGAAC
* * * * *
19050419 TCCGTATGCCTAAGTCAACCCACAAAACGAGTGCGCGGGCGCTCAGTCGGCCGGAGAGGCAAAAT
257 TCCGTATG-TTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAAAGGCAAAAT
** * * * ** *
19050484 GCACAAACCGGGGATCAGCTCGATCCCCCCTGTGAGTTACCGATCCTGCTGCTGGTCCTGCTGTC
321 GCACAAACCGGGGATCAGCTCGATCCCCCCTACGAGCTACCGATCCAGCTACCAGTCCTGCTGCC
* * ** * * *
19050549 GCAACCCTTGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATTAA
386 ACAACACTCAGTCAGCTCGGATCGTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATTAA
* * * * * *
19050614 CTCCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGTGCTTAGTCGGTCGAAGATGTAGAA
451 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAA
* * * * * *
19050679 TGTGCAAGCCAGGGACCGACCTGGTCCCCCCTACGTGCTATCGATCTTGCTACCACAACCTTCGG
516 TGCGCAAGCCAGGGACCGACCTGATCCCCCCTACGTGCTATCAATCCTACTACCACAACCCTCGG
* * ** *
19050744 TCCGATCTAATGTTAGACTGGGAATAAACTTTGTATGCCTAAATCAACCCACGAAACAAGCATTC
581 TCAGATCTAATCTTAGACTGGGAATAAACTCCGTATGCCTAAATCAACCCACGAAACAAGCATAC
* * * *
19050809 GGGGGCTGAGCTGGCCGGAGAGGCATAATGTGCAAGCCGGGAATCGGCAC
646 GGGCGCTGAGCTGACCGGAGAGGCATAATGCGCAAGCCGAGAATCGGCAC
* ** * * *
19050859 GAT-CCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGGTTTGGCTGGGTCTTAGACATG
1 GGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATG
* * *
19050923 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTACAGGCGCTCAGTTGGTCGGAGA
66 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGTCGGTCGGAGA
* * * *** **
19050988 GGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCAAATGTCAAAA
131 GGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAA
*
19051053 CCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCC
196 CCCTCGGTCT-GTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCC
* * * * * * * *
19051118 ATATGTATAACTCAACCCACGAAATGAGCGTACGGGTGTTCAGTCGGTCGGAAAGGCATAATGCA
260 GTATGT-TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAAAGGCAAAATGCA
* * *
19051183 TAAGCCGGGGATCAGCTCGATCCCCCTCTACGTGCTACCGATCCAGCTACCAGTCCTGCTGCCAC
324 CAAACCGGGGATCAGCTCGATCCCCC-CTACGAGCTACCGATCCAGCTACCAGTCCTGCTGCCAC
* *
19051248 AACACTCAGTCCAGCTGGGGCTCCGTATG-CTGGGAATGAACTCCATATGCTTAGACATGGAATT
388 AACACTCAGT-CAGCT-CGGAT-CGTA-GACTGGGAATGAACTCCATATGCTTAGACATGGAATT
*
19051312 AA-TCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGGCCGAAGAGGCAG
449 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAG
* * * * *
19051376 AATGCGCAAGCCGGGGACCGATCTGATCCCCCCTGCGTGCTGTCAATCCTACTGCCACAACCCTC
514 AATGCGCAAGCCAGGGACCGACCTGATCCCCCCTACGTGCTATCAATCCTACTACCACAACCCTC
* * * * * * **
19051441 GGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGTG
579 GGTC-AGATCTAATCTTAGACTGGGAATAAACTCCGTATGCCTAAATCAACCCACGAAACAAGCA
* * *
19051505 TACGGGCGTTGAGCTGACTGGAGAGGCATAATGCGCAAGCCGAG-ATCGGCTC
643 TACGGGCGCTGAGCTGACCGGAGAGGCATAATGCGCAAGCCGAGAATCGGCAC
* **
19051557 GGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCAATCTGACTGGGGCTTAGACATG
1 GGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATG
* * * * *
19051622 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAG-CCGACTGGAG
66 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGTCGGTC-GGAG
* * * * **
19051686 AGACAGAATGCGCAAGCCGGGGATTGGCTCGGTCCCCTCTGCGTGCTACCGATCCTGCTGTCGCA
130 AGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCA
* *
19051751 ACCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAA-TTCCGTATGCTTAGACTGGGGATGAACT
195 ACCCTCGGTCT-GTCTGATCTTAGACTGGGAATGAACTT-CGTATGCTTAGACTGGGGATGAACT
* * *
19051815 CCGTATGCTTAAGTCAGCCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGC
258 CCGTATG-TTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAAAGGC
19051874 CGATCGAAGA
Statistics
Matches: 855, Mismatches: 145, Indels: 28
0.83 0.14 0.03
Matches are distributed among these distances:
696 294 0.34
697 42 0.05
698 17 0.02
699 459 0.54
700 42 0.05
701 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (695 bp):
GGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGTCGGTCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAA
CCCTCGGTCTGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCG
TATGTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAAAGGCAAAATGCACA
AACCGGGGATCAGCTCGATCCCCCCTACGAGCTACCGATCCAGCTACCAGTCCTGCTGCCACAAC
ACTCAGTCAGCTCGGATCGTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATTAACTCCG
TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCGC
AAGCCAGGGACCGACCTGATCCCCCCTACGTGCTATCAATCCTACTACCACAACCCTCGGTCAGA
TCTAATCTTAGACTGGGAATAAACTCCGTATGCCTAAATCAACCCACGAAACAAGCATACGGGCG
CTGAGCTGACCGGAGAGGCATAATGCGCAAGCCGAGAATCGGCAC
Found at i:19051806 original size:26 final size:26
Alignment explanation
Indices: 19051770--19051825 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19051760 CTGGTCTGAT
*
19051770 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19051796 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19051822 CTTA
1 CTTA
19051826 AGTCAGCCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19052179 original size:26 final size:26
Alignment explanation
Indices: 19052150--19052202 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19052140 CCAGTCCGAT
19052150 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
19052176 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19052202 C
1 C
19052203 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19052692 original size:26 final size:26
Alignment explanation
Indices: 19052651--19052703 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19052641 CCGGTCTAAT
19052651 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
19052677 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
19052703 C
1 C
19052704 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19053749 original size:26 final size:26
Alignment explanation
Indices: 19053713--19053765 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19053703 CCAGTTCGAT
19053713 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
* *
19053739 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
19053765 C
1 C
19053766 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTGTATG
Found at i:19055030 original size:26 final size:26
Alignment explanation
Indices: 19054992--19055044 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19054982 CCGATTCAAT
19054992 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19055018 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19055044 C
1 C
19055045 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19055306 original size:158 final size:157
Alignment explanation
Indices: 19055018--19055516 Score: 551
Period size: 158 Copynumber: 3.2 Consensus size: 157
19055008 ACTCCATATG
* * *
19055018 CTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCATGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
* * * * * *
19055083 TGGCCGGAGAGGCAGAATACGTAAGTCTGGG-TCTGGCTCGATTGCCCCTGCGTGCTATCGATCC
66 CGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATC-GACTCGA-TCCCCCTGCGTGCTGTCGATCC
* * * *
19055147 TGCTGTCGTAACACTCAGTCCGGTCCGAT
129 TGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
19055176 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
* * * *
19055240 CCAGCCGGAGAGGCATAATGCGCAAGTC-GGGATCGACTCGATCCCCCTCTGCGTGCTGTCGGTC
65 CCGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACTCGAT-CCCC-CTGCGTGCTGTCGATC
* * * **
19055304 CTGCTGCCACAACCCTTGGTCCGG-CTGGGG
128 CTGCTGCCGCAACCCTCGGTCCGGTC-CGAT
* * * * *
19055334 CTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGTGCGTGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
* * * * *
19055399 CGGCTGGAGAGGCAGAATGCGTAAGTCGGGGATC-AGCCCGGTCCCCCTGCGTGCTGCCAATCCT
66 CGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGA-CTCGATCCCCCTGCGTGCTGTCGATCCT
19055463 GCTGCCGCAACCCTCGGTCCGGTCCGAT
130 GCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
19055491 CTTAGA-TTGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19055517 TTTAGACTAG
Statistics
Matches: 282, Mismatches: 49, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 71 0.25
158 198 0.70
159 11 0.04
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
CGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACTCGATCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGGTCCGAT
Found at i:19056236 original size:26 final size:26
Alignment explanation
Indices: 19056207--19056259 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19056197 CCGGTCCAAT
19056207 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
19056233 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
19056259 C
1 C
19056260 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:19056308 original size:195 final size:197
Alignment explanation
Indices: 19056010--19056366 Score: 465
Period size: 195 Copynumber: 1.8 Consensus size: 197
19056000 GTCCGATTAG
** * * * *
19056010 ATCTTAGACTAGGAATGAACTCTGTATTCTTAGACTGGGGATTAACTCCATATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
* * *
19056075 CCACGAAATGAGTGTACGGGCGTTCAGCCGACCGGAGAGG-TAGAATGCACAAG-CTAGGGATCG
66 CCACAAAACGAGCGTACGGGCGTTCAGCCGACCGGAGAGGCT-GAATGCACAAGTC-AGGGATCG
19056138 ACCCGAT-CC-CCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATTGCAACCCTCGGTCCGG
129 ACCCGATCCCTCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATTGCAACCCTCGGTCCGG
19056201 TCCA
194 TCCA
*
19056205 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
1 ATCTTAGACTAGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAA
* * ** **
19056269 CCGACAAAACGAGCGTACGGGCGCTT-AGTCGGTCGGAGAGGCTGAATGCGTAAGTCAGGGATCG
65 CCCACAAAACGAGCGTACGGGCG-TTCAGCCGACCGGAGAGGCTGAATGCACAAGTCAGGGATCG
* **
19056333 ACCCGGTCCCTCCCTGTGTGCTGTCGATCCTGCT
129 ACCCGATCCCTCCCTACGTGCTGTCGATCCTGCT
19056367 ATCGCAACCC
Statistics
Matches: 137, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
195 109 0.80
196 7 0.05
197 21 0.15
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (197 bp):
ATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
CCACAAAACGAGCGTACGGGCGTTCAGCCGACCGGAGAGGCTGAATGCACAAGTCAGGGATCGAC
CCGATCCCTCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATTGCAACCCTCGGTCCGGTC
CA
Found at i:19057778 original size:26 final size:26
Alignment explanation
Indices: 19057732--19057784 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19057722 CCAGTTCGAT
* *
19057732 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19057758 CTTAGACTGTGG-ATAAACTCCGTATG
1 CTTAGACTG-GGAATAAACTCCGTATG
19057784 C
1 C
19057785 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19058847 original size:26 final size:26
Alignment explanation
Indices: 19058809--19058861 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19058799 CTGGTACGAT
*
19058809 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19058835 CTTAGACAT-GGAATAAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
19058861 C
1 C
19058862 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19058977 original size:184 final size:184
Alignment explanation
Indices: 19058650--19059019 Score: 492
Period size: 184 Copynumber: 2.0 Consensus size: 184
19058640 TTCGGTTGGG
* * *
19058650 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGTGCTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGAGTGCTCAA
** * *
19058715 CCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGTGTGCTACCTATCC
66 CCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGTGTGCTACCGATCC
** * * *
19058780 TGGTGCCGCAACCCTCGGTCTGGTACGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTACCGCAACCCTCGATCTGATACGATCTTAGACTGGGAATGAACTCCGTAT
* * *
19058834 GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACGAACGTGCGAGTGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGAGTGCTCAA
* * * **
19058899 CCGACCGGAGAGGCAGAATTGCACAAGCTG-GGA-CTGGCCCGGTCCCCCCTGTGTGCTGTCGAT
66 CCGACCGAAGAGGCAGAA-TGCACAAGCCGAGGATC-GGCCCGATCCCCCCTGTGTGCTACCGAT
* * * *
19058962 CCTACTACTGCAACCCTCGATCTGATCCGATTTTAGACTGGGAATGAACTTCGTAT
129 CCTACTACCGCAACCCTCGATCTGATACGATCTTAGACTGGGAATGAACTCCGTAT
19059018 GC
1 GC
19059020 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.01
184 150 0.94
185 9 0.06
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGAGTGCTCAA
CCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGTGTGCTACCGATCC
TACTACCGCAACCCTCGATCTGATACGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:19059346 original size:26 final size:26
Alignment explanation
Indices: 19059310--19059362 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19059300 TCGGTTAGAT
19059310 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19059336 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19059362 C
1 C
19059363 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19059632 original size:196 final size:195
Alignment explanation
Indices: 19059309--19059660 Score: 474
Period size: 196 Copynumber: 1.8 Consensus size: 195
19059299 TTCGGTTAGA
* * * * *
19059309 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * ***
19059374 CATGAAATGAGCGTGCGGGTGCACAGCCGGTTGGAGAGACAGAATGCACAAGCCGAGGATCGGCC
66 CATGAAACGAGCGTGCGGGCGCACAACCGACCGGAGAGACAGAATGCACAAGCCGAGGATCGGCC
*
19059439 CGATGCCTCCTACGTGCTATCGATCCTGCTATTGGTCCTACTATCGCAACCCTTGATCCAAATCG
131 CGAT-CCCCCTACGTGCTATCGATCCTGCTATTGGTCCTACTATCGCAACCCTTGATCCAAATCG
19059504 T
195 T
*
19059505 TCTTAGACTGGGAATGAACTCCATCTACTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCATATACTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAC
** ** **
19059569 CCATGAAACGAGCGTGCGGGCGTTCAACCGACCGGAGAGGTAGAATGCGTAAGCC-ATGGATCGG
65 CCATGAAACGAGCGTGCGGGCGCACAACCGACCGGAGAGACAGAATGCACAAGCCGA-GGATCGG
* *
19059633 CCCGATCCCCCTATGTGCTGTCGATCCT
129 CCCGATCCCCCTACGTGCTATCGATCCT
19059661 TCTACCGAAC
Statistics
Matches: 133, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
195 20 0.15
196 112 0.84
197 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (195 bp):
TCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
CATGAAACGAGCGTGCGGGCGCACAACCGACCGGAGAGACAGAATGCACAAGCCGAGGATCGGCC
CGATCCCCCTACGTGCTATCGATCCTGCTATTGGTCCTACTATCGCAACCCTTGATCCAAATCGT
Found at i:19060052 original size:25 final size:25
Alignment explanation
Indices: 19059997--19060056 Score: 104
Period size: 24 Copynumber: 2.4 Consensus size: 25
19059987 CTTGTCCGAT
19059997 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACT-GGAATGAACTCCATATG
19060023 C-TAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
19060047 CTTAGACTGG
1 CTTAGACTGG
19060057 GGATGAAGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
24 18 0.55
25 14 0.42
26 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:19061451 original size:26 final size:26
Alignment explanation
Indices: 19061413--19061465 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19061403 GGCTCAAACT
*
19061413 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19061439 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19061465 C
1 C
19061466 CTAAGCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19061780 original size:26 final size:26
Alignment explanation
Indices: 19061751--19061803 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19061741 TCAGTCCGAT
19061751 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
19061777 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
19061803 C
1 C
19061804 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:19061988 original size:26 final size:26
Alignment explanation
Indices: 19061959--19062009 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19061949 CCAGTCCGAT
19061959 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19061985 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
19062010 CCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19062826 original size:170 final size:163
Alignment explanation
Indices: 19062542--19063098 Score: 493
Period size: 170 Copynumber: 3.4 Consensus size: 163
19062532 GGCCGACCGA
* * * * *
19062542 AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTACTGTCGATCCCACTATC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGAT--C-C--T-
* * * * * * *
19062607 GGTCCTACTGCCACAACCCTCGGTCCAG-CTAGGGCTTCGGCATGGAATGAACTCCGTATGCCTA
59 -GTCCCACTGCCACAACCCTCAGTCCAGTC-CGAGATTAGACATGGAATGAACTCCGTATGCCTA
* * * *
19062671 AGCCAACCCGCAAAACGAGCGTGTGGGTGCTCAGCCAGCCGG
122 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGG
* *
19062713 AGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCTG
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTG-T-C--
* *
19062778 GTCCTACTGCCACAACCCTCAGTCCGGTCCGATATTAGAC-TGGGAATGAACTCCGTATGCCTAA
62 --CC-ACTGCCACAACCCTCAGTCCAGTCCGAGATTAGACAT-GGAATGAACTCCGTATGCCTAA
* * * * * *
19062842 GTCAACCCATGAAACAAGCGTACGGGCGTTGAGCCTA-CCGG
123 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-AGCCGG
* * *
19062883 AGAGGCATAATGCGCAAGCCGGGGATAGGCCCGATCCCCCTCTGCGTGCTGCCG-----GTCCCA
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATCCTGTCCCA
* * ** * * *
19062943 TTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
65 CTGCCACAACCCTCAGTCCAGTCCGAGATTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
19063008 CACGAAACGGGCGTGCGGGCGGTCAGCCGGTCGG
130 CACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGG
* * *
19063042 AGAGGTAGAATGCGCATGCCGGGGATCGGTCCGGT-CCCCCTGCGTGCTGCCGATCCT
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
19063099 ACTACCGTAA
Statistics
Matches: 313, Mismatches: 55, Indels: 45
0.76 0.13 0.11
Matches are distributed among these distances:
157 13 0.04
158 4 0.01
159 108 0.35
160 3 0.01
163 1 0.00
164 2 0.01
165 3 0.01
166 1 0.00
167 1 0.00
168 1 0.00
169 2 0.01
170 124 0.40
171 50 0.16
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (163 bp):
AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGTCCCAC
TGCCACAACCCTCAGTCCAGTCCGAGATTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGG
Found at i:19063063 original size:159 final size:158
Alignment explanation
Indices: 19062770--19063093 Score: 348
Period size: 159 Copynumber: 2.1 Consensus size: 158
19062760 CTGCCGATCC
* * * * ** ***
19062770 TGCTGCTGGTCCTACTGCCACAACCCTCAGTCCGGTCCGATATTAGAC-TGGGAATGAACTCCGT
1 TGCTGCCGGTCCCACTGCCACAACCCTCGGTCCAGTTAGGGCTTAGACAT-GGAATGAACTCCGT
* * * * * * *
19062834 ATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGTTGAGCCTA-CCGGAGAGGCATAATGCGC
65 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-AGCCGGAGAGGCAGAATGCGC
* *
19062898 AAGCCGGGGATAGGCCCGATCCCCCTCTGCG
129 AAGCCGGGGATCGGCCCGGTCCCCC-CTGCG
* * *
19062929 TGCTGCCGGTCCCATTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGCCGGTCCCACTGCCACAACCCTCGGTCCAGTTAGGGCTTAGACATGGAATGAACTCCGTA
* * * * * *
19062994 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGGTCAGCCGGTCGGAGAGGTAGAATGCGCAT
66 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAA
*
19063059 GCCGGGGATCGGTCCGGT-CCCCCTGCG
131 GCCGGGGATCGGCCCGGTCCCCCCTGCG
19063086 TGCTGCCG
1 TGCTGCCG
19063094 ATCCTACTAC
Statistics
Matches: 137, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
157 13 0.09
158 4 0.03
159 119 0.87
160 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.18
Consensus pattern (158 bp):
TGCTGCCGGTCCCACTGCCACAACCCTCGGTCCAGTTAGGGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAA
GCCGGGGATCGGCCCGGTCCCCCCTGCG
Found at i:19064416 original size:26 final size:24
Alignment explanation
Indices: 19064379--19064428 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
19064369 GCTCGGTCCG
19064379 GTTTGATCTTAGAC-TGGGAATGAA
1 GTTTGATCTTAGACAT-GGAATGAA
19064403 GTTTGTATGCTTAGACATGGAATGAA
1 GTTTG-AT-CTTAGACATGGAATGAA
19064429 CTCCGTATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 15 0.65
27 1 0.04
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (24 bp):
GTTTGATCTTAGACATGGAATGAA
Found at i:19065446 original size:26 final size:26
Alignment explanation
Indices: 19065417--19065469 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19065407 CTGGTTCAAT
*
19065417 CTTAAACTGGGAATGACCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
19065443 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
19065469 C
1 C
19065470 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:19067331 original size:26 final size:26
Alignment explanation
Indices: 19067292--19067343 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19067282 TGCCTCAAAA
19067292 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
19067318 TCTTAGACAT-GGAATGAACTTCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
19067344 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:19067622 original size:605 final size:590
Alignment explanation
Indices: 19066454--19067589 Score: 1390
Period size: 605 Copynumber: 1.9 Consensus size: 590
19066444 ATCTCAAAAC
* *
19066454 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGATGGATAGGGGGCCAATATAAGAGCCAAG
1 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCGGCCAATATAAGAGCCAAG
*
19066519 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCAATCATCAGAACCCCTAATGC
66 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCAATCATCAGAACCCCTAATGC
19066584 CACCGATTAGGCTCTCCGATGATGCTCCGACGATGGTGCCCCAGGAGAAAAAAATGTAGCACCAG
131 CACCGATTAGGCTCTCCGATGATGCTCCGACGATGGTGCCCCAGGAGAAAAAAATGTAGCACCAG
* * *
19066649 CACATGCCCAAGCCCAGCTTGTGCATCATGGCTCAAACTCTTAGACTGGGAATGAACTCCGTATG
196 CACATGCCCAAGCCCAGCATGTGCATCATGCCTCAAAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19066714 CTTAGTCATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
261 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* ** * *
19066779 CGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGTCCATTCCCCCTCAGTGTGCTGTGGAAAC
326 CGACCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCATCCCCCCTCAGTGTGCTGTGG-AAC
* * *
19066844 CGCTGCCAAAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
390 CGCTGCCAAAACCCTCGATCCGGCTCGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAA
* * * ** ** * * *
19066909 CCCACGAAACGGGTGTGCGGGTGCTCAGCCTACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAG
455 CCCACAAAACGAGCGAACGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAG
* * * *
19066974 CCCGGTCCCCCTTGCGTGCTACCAACCCTGCTGCCGCAACCCTCGATCTGGTTCAATCTTACACT
520 CCCAGTCCCCCTTGCGAGCTACCAACCCTACTGCCACAACCCTCGATCTGGTTCAATCTTACACT
19067039 GGGAAT
585 GGGAAT
* *
19067045 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTTATGAGGGATAGGCGGCCAATATAAGGGCCAAG
1 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCGGCCAATATAAGAGCCAAG
* * *
19067110 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGTCCCCCCAATCGTCGGAACCCTTAA
66 TACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-G-CCCCCCAATCATCAGAACCCCTAA
* * *
19067175 TGTCGCCGGTTAGGCTCTCCAGCGATGCTCTGGCATTGCTCCGACGATGGTGCCCCAGGCA-AAA
128 TGCCACCGATTAGGCTCT-C--CGA-----T-G-A-TGCTCCGACGATGGTGCCCCAGG-AGAAA
* * *
19067239 AAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCATCATGCCTCAAAATCTTAGACTGGG
181 AAAATGTAGCACCAGCACATGCCCAAGCCCAGCATGTGCATCATGCCTCAAAATCTTAGACTGGG
* * * *
19067304 AATGAACTCCGTATTCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAGGAGC
246 AATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
* *
19067369 ATGCGGGCACTCTGCCGACCGAAGAGGCAGAATGCACAAG-CTGGGGATCGGCCCGGTCCCCCCT
311 ATGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCACAAGTC-GGGGATCGGCCC-ATCCCCCCT
* * * * * * * * *
19067433 -A-TGTGCTGTTG-ATC-CTGCTAATGCAACCCTTGGTTC-GATCCGATCTTAGGC-TGAGAATG
374 CAGTGTGCTGTGGAACCGCTGCCAA---AACCCTCGATCCGGCT-CGAGCTTAGACATG-GAATG
* * * * * *
19067492 AACTCCGTATGCATAAGTCAACCCACAAAATGAGCGAACGGGCACTGAGCCGGCC-GAGGAGGTA
434 AACTCCCTATGCATAAGCCAACCCACAAAACGAGCGAACGGGCACTCAGCCGACCGGA-GAGGCA
* **
19067556 TAATGCGCAAGCCAGGGATTGGCCCAGTCCCCCT
498 GAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCT
19067590 CTGTGAGTTA
Statistics
Matches: 458, Mismatches: 64, Indels: 33
0.83 0.12 0.06
Matches are distributed among these distances:
591 93 0.20
592 5 0.01
593 1 0.00
594 35 0.08
595 1 0.00
597 3 0.01
601 6 0.01
602 3 0.01
603 7 0.02
604 106 0.23
605 190 0.41
606 8 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (590 bp):
GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCGGCCAATATAAGAGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCAATCATCAGAACCCCTAATGC
CACCGATTAGGCTCTCCGATGATGCTCCGACGATGGTGCCCCAGGAGAAAAAAATGTAGCACCAG
CACATGCCCAAGCCCAGCATGTGCATCATGCCTCAAAATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
CGACCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCATCCCCCCTCAGTGTGCTGTGGAACC
GCTGCCAAAACCCTCGATCCGGCTCGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAAC
CCACAAAACGAGCGAACGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGC
CCAGTCCCCCTTGCGAGCTACCAACCCTACTGCCACAACCCTCGATCTGGTTCAATCTTACACTG
GGAAT
Found at i:19068334 original size:26 final size:26
Alignment explanation
Indices: 19068305--19068357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19068295 CTAGTTTGAT
19068305 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
19068331 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19068357 C
1 C
19068358 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19069022 original size:26 final size:26
Alignment explanation
Indices: 19068984--19069036 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19068974 AGCTCAAACT
19068984 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19069010 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19069036 C
1 C
19069037 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19069452 original size:158 final size:158
Alignment explanation
Indices: 19069073--19069459 Score: 368
Period size: 158 Copynumber: 2.4 Consensus size: 158
19069063 CAGGCAGTCA
* * * * **
19069073 GCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTT
1 GCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGTTC-GATCTTAGACTGGGAATGAACTCC
* ** * * * * *
19069138 GTATGCCTAAGTCAACCCACAAAACTTGTGTGCAGGTGCTGAGCCGGTCGGAGAGGCATAATGCG
65 GTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGTGCTCAGCCAGTCGAAGAGGCAGAATGCG
** *
19069203 CAAGCCAGGGATCGGCTTGGTCCCCCTCT
130 CAAGCCAGGGATCGGCCCGGTCACCCTCT
* * * * * ** * *
19069232 GCGTGCTGCCGGTCCCACTG-CGACAACCTTCGGTCCGATTGGGGCTTAGACAT--AAATAAACT
1 GCGTGCTGTCGATCCTACTGCCG-CAACCCTCGGTCCG-TTCGATCTTAGAC-TGGGAATGAACT
* ** * * * * *
19069294 CCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGTTCAGTCAGTCGAAGAGGTAGATTG
63 CCGTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGTGCTCAGCCAGTCGAAGAGGCAGAATG
*
19069359 CGCAAGCCAGGGATTGGCCCGGTCACCC-CT
128 CGCAAGCCAGGGATCGGCCCGGTCACCCTCT
* *
19069389 GCGTGTTGTCGATCCTACTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCC
1 GCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCC-GTTCGATCTTAGACTGGGAATGAACTCC
19069454 GTATGC
65 GTATGC
19069460 TTAGACTGGG
Statistics
Matches: 174, Mismatches: 47, Indels: 15
0.74 0.20 0.06
Matches are distributed among these distances:
156 1 0.01
157 39 0.22
158 97 0.56
159 35 0.20
160 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
GCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGTTCGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGTGCTCAGCCAGTCGAAGAGGCAGAATGCGC
AAGCCAGGGATCGGCCCGGTCACCCTCT
Found at i:19069469 original size:26 final size:26
Alignment explanation
Indices: 19069433--19069483 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19069423 CCAGTTCGAT
19069433 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19069459 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19069484 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19076121 original size:26 final size:26
Alignment explanation
Indices: 19076070--19076122 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19076060 GGCTCAAAAT
* *
19076070 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
19076096 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
19076122 C
1 C
19076123 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:19076397 original size:159 final size:159
Alignment explanation
Indices: 19076105--19076591 Score: 360
Period size: 159 Copynumber: 3.1 Consensus size: 159
19076095 GCTTAGACAT
* * *
19076105 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTTAGCCGGCCAGAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGAGCACTTAGCCGGCCAGAG
* * * * ** * *
19076170 AGGTAGAATGCACAAGCTGAAGATTAGCTCGATCCCCCTCTGTGTGCTGTCGATCCTGCTACCGC
66 AGGCAGAATGCACAAGCCGAAGATCAGCCCGATCCCCCTCTGCCTGCTGCCGATCCTGCTACCAC
19076235 AACCCTCGGTCCGGTCTGATCTTACACTA
131 AACCCTCGGTCCGGTCTGATCTTACACTA
* * * * * * *
19076264 GGAATGAACTCCGTATGTATAAGTCAACCCACAAAACGAGCGTACGGGC-GTTGAGCCAGTC-GA
1 GGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGAGCACTT-AGCCGGCCAG-
*
19076327 AGAGGCATAATGCACAAGCCGAAGATCAGCCC-AGTCCCCCTCTGCCTGCTGCC-AGT-CTCGCT
64 AGAGGCAGAATGCACAAGCCGAAGATCAGCCCGA-TCCCCCTCTGCCTGCTGCCGA-TCCT-GCT
* ** *
19076389 ACCACAACCCTCGGTCC-GACTGGGGCTTAGAC-A
126 ACCACAACCCTCGGTCCGGTCT-GATCTTACACTA
* * * * * * * * * * ** *
19076422 TGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGCCGATCGGA
1 -GGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGAGCACTTAGCCGGCCAGA
** * * * * * ** **
19076487 GAGGCAGAATGCGA-AAGCCGGGGATCGGCCTGGTCCCCCCCAGTGTGCTATCGATCCTGCTACC
65 GAGGCAGAATGC-ACAAGCCGAAGATCAGCCCGATCCCCCTCTGCCTGCTGCCGATCCTGCTACC
** * * ** *
19076551 GTAACCCTCGATCTGGTCCAATCTTAGACTA
129 ACAACCCTCGGTCCGGTCTGATCTTACACTA
19076582 GGAATGAACT
1 GGAATGAACT
19076592 TCGTATGCTT
Statistics
Matches: 255, Mismatches: 58, Indels: 30
0.74 0.17 0.09
Matches are distributed among these distances:
158 11 0.04
159 235 0.92
160 9 0.04
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGAGCACTTAGCCGGCCAGAG
AGGCAGAATGCACAAGCCGAAGATCAGCCCGATCCCCCTCTGCCTGCTGCCGATCCTGCTACCAC
AACCCTCGGTCCGGTCTGATCTTACACTA
Found at i:19076614 original size:26 final size:26
Alignment explanation
Indices: 19076573--19076625 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19076563 CTGGTCCAAT
*
19076573 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19076599 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACT-AGGAATGAACTCCGTATG
19076625 C
1 C
19076626 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19077355 original size:342 final size:343
Alignment explanation
Indices: 19076267--19077717 Score: 1598
Period size: 344 Copynumber: 4.2 Consensus size: 343
19076257 TACACTAGGA
** * * ** * * * *
19076267 ATGAACTCCGTATGTATAAGTCAACCCACAAAACGAGCGTACGGGCGTTGAGCCAGTCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGTCGGAGAGG
* * * * * * *
19076332 CATAATGCACAAGCCGAAGATCAGC-CCAGTCCCCCTCTGCCTGCTGCCAGTCTCGCTACCACAA
66 CATAATGCATAAGTCGAGGATCAGCTCGA-TCCCCCGCTGCGTGCTGCCAGTCTCGCTGCCACAA
*
19076396 CCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
130 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* *
19076461 GGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCTGGTCCCCC
195 GGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCC
* * * * * * *
19076526 CCAGTGTGCTATCGATCCTGCTACCGTAACCCTCGATCTGGTCCAATCTTAGACTAGGAATGAAC
260 CTA-CGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAAC
19076591 TTCGTATGCTTAGACTGAGG
324 TTCGTATGCTTAGACTGAGG
* * * *
19076611 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGGGCGCTCAGCCAGCCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGTCGGAGAGG
* * * ** * * * **
19076676 CATAATGCATAAGTCGGGGATTAGCTCGGTCCCCTACTGCATGCTGCCAATCCCGCTGCCATGAC
66 CATAATGCATAAGTCGAGGATCAGCTCGATCCCCCGCTGCGTGCTGCCAGTCTCGCTGCCACAAC
* * ***
19076741 CCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGTAGAAGCCAACCCACGAAACGG
131 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* * *** * * * * * *
19076806 GCATACGGGTGCTCAATGGGTTGGAGAGGCAGAATGCACAAGCCGGGTATCGACCCGATCCCCCC
196 GCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCC
* * ** * *
19076871 TAGGTGCTGTCGATCCTACTGTAGCAACCCTCGATCTGG-CTCGATCTTAGA-TGCGGAATGAAC
261 TACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTC-CGATCTTAGACT-AGGAATGAAC
* **
19076934 TCCGTATGCTTAGACTGTTG
324 TTCGTATGCTTAGACTGAGG
* *
19076954 ATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAGCGTCG-GGGCGCTCAACCGGTCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT-GTGGGCGCTCAGCCGGTCGGAGAG
* *
19077018 GCATAATGCGTAAGTCGAGGATCAGCTCGATCCCCCGCTGCGTGCTGTCAGT-TACGCTGCCACA
65 GCATAATGCATAAGTCGAGGATCAGCTCGATCCCCCGCTGCGTGCTGCCAGTCT-CGCTGCCACA
* * *
19077082 ACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAAC
129 ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * *
19077147 GGGCATGCGGGCGTTTAGCCGGTCGGAGAGGCAGAATGCGCATGCCGGGGATCGGCCTGAT-CCC
194 GGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCC
* * *
19077211 CCTACGTGCTGTCGTTCCTGCTGCCGCAACCCT-TAGTCCGGTCCGATCTTAGACTAAGAATGAA
259 CCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTAGGAATGAA
*
19077275 CTTCGTATGCTTAGACTGGGG
323 CTTCGTATGCTTAGACTGAGG
* * *
19077296 ATGAACTCCGCT-TGCCTAAGTCAACCAACGAAATGAGCGTGTGGGCACTCAGTCGGTCGGAGAG
1 ATGAACTCCG-TATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGTCGGAGAG
* * * * *
19077360 GCATAATGCGA-AAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTACCGGTCTCGCTGCCACA
65 GCATAATGC-ATAAGTCGAGGATCAGCTCGATCCCCCGCTGCGTGCTGCCAGTCTCGCTGCCACA
* *
19077424 ACCCTCGGTCC-AGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAA
129 ACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * * * *
19077488 CGAGCATGTGGGTGCTCAGTCGACCGGAGAGGCAAAATGTGCAAGCTGGGGATCGGTCC-GGTCC
193 CGGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCTGATCC
* * * *
19077552 CCTCCTGCGTGATGCCGATCCTGCTGCCGCAACCCTCGATCCGGACCGATCTTAGACT-GTGAAT
257 CC-CCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTAG-GAAT
*
19077616 GAAC-TCTGTATGCTTAGACATG-GA
320 GAACTTC-GTATGCTTAGAC-TGAGG
* * * * * * ** * * **
19077640 ATGAAATCTGTATGCCTAAGCCAACCTATGAAACGAGCGTGCAGGCACTTAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGTCGGAGAGG
* *
19077705 CAGAATGCCTAAG
66 CATAATGCATAAG
19077718 CCAGTGATCG
Statistics
Matches: 923, Mismatches: 162, Indels: 44
0.82 0.14 0.04
Matches are distributed among these distances:
341 3 0.00
342 284 0.31
343 289 0.31
344 343 0.37
345 4 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGTCGGAGAGG
CATAATGCATAAGTCGAGGATCAGCTCGATCCCCCGCTGCGTGCTGCCAGTCTCGCTGCCACAAC
CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
GCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCC
TACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTT
CGTATGCTTAGACTGAGG
Found at i:19077539 original size:159 final size:159
Alignment explanation
Indices: 19077283--19077589 Score: 363
Period size: 159 Copynumber: 1.9 Consensus size: 159
19077273 AACTTCGTAT
* * * *
19077283 GCTTAGACTGGGGATGAACTCCGCTTGCCTAAGTCAACCAACGAAATGAGCGTGTGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGCTTGCCTAAGCCAACCAACGAAACGAGCATGTGGGCACTCAG
** * * *
19077348 TCGGTCGGAGAGGCATAATGCGAAAGTCGGGGATCAGCCCGGTCCCC-CGCTGCGTGCTACCGGT
66 TCGACCGGAGAGGCAAAATGCGAAAGTCGGGGATCAGCCCGGTCCCCTC-CTGCGTGATACCGAT
19077412 -CTCGCTGCCACAACCCTCGGTCCAGTTGGG
130 CCT-GCTGCCACAACCCTCGGTCCAGTTGGG
* * **
19077442 GCTTAGACAT-GGAATGAACTCC-TTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCGCT-TGCCTAAGCCAACCAACGAAACGAGCATGTGGGCACTC
* * * * *
19077505 AGTCGACCGGAGAGGCAAAATGTGCAAG-CTGGGGATCGGTCCGGTCCCCTCCTGCGTGATGCCG
64 AGTCGACCGGAGAGGCAAAATGCGAAAGTC-GGGGATCAGCCCGGTCCCCTCCTGCGTGATACCG
*
19077569 ATCCTGCTGCCGCAACCCTCG
128 ATCCTGCTGCCACAACCCTCG
19077590 ATCCGGACCG
Statistics
Matches: 124, Mismatches: 19, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
158 2 0.02
159 118 0.95
160 4 0.03
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGCTTGCCTAAGCCAACCAACGAAACGAGCATGTGGGCACTCAG
TCGACCGGAGAGGCAAAATGCGAAAGTCGGGGATCAGCCCGGTCCCCTCCTGCGTGATACCGATC
CTGCTGCCACAACCCTCGGTCCAGTTGGG
Found at i:19077628 original size:159 final size:158
Alignment explanation
Indices: 19077283--19077628 Score: 351
Period size: 159 Copynumber: 2.2 Consensus size: 158
19077273 AACTTCGTAT
* * * * *
19077283 GCTTAGACTGGGGATGAACTCCGCT-TGCCTAAGTCAACCAACGAAATGAGCGTGTGGGCACTCA
1 GCTTAGACT-GGAATGAACTCTG-TATGCCTAAGCCAACCAACGAAACGAGCATGTGGGCACTCA
** * * *
19077347 GTCGGTCGGAGAGGCATAATGCGAAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTACCGGT
64 GTCGACCGGAGAGGCAAAATGCGAAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGATACCGAT
* *** *
19077412 CTCGCTGCCACAACCCTCGGTCCAGTTGGG
129 CTCGCTGCCACAACCCTCGATCCAGACCGA
* **
19077442 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCATGTGGGTGCTCA
1 GCTTAGAC-TGGAATGAACT-CTGTATGCCTAAGCCAACCAACGAAACGAGCATGTGGGCACTCA
* * * * *
19077506 GTCGACCGGAGAGGCAAAATGTGCAAG-CTGGGGATCGGTCCGGTCCCCTC-CTGCGTGATGCCG
64 GTCGACCGGAGAGGCAAAATGCGAAAGTC-GGGGATCAGCCCGGTCCCC-CGCTGCGTGATACCG
* *
19077569 ATC-CTGCTGCCGCAACCCTCGATCCGGACCGA
127 ATCTC-GCTGCCACAACCCTCGATCCAGACCGA
*
19077601 TCTTAGACTGTGAATGAACTCTGTATGC
1 GCTTAGACTG-GAATGAACTCTGTATGC
19077629 TTAGACATGG
Statistics
Matches: 153, Mismatches: 26, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
158 7 0.05
159 143 0.93
160 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCATGTGGGCACTCAGT
CGACCGGAGAGGCAAAATGCGAAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGATACCGATCT
CGCTGCCACAACCCTCGATCCAGACCGA
Found at i:19077641 original size:26 final size:26
Alignment explanation
Indices: 19077602--19077654 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19077592 CCGGACCGAT
*
19077602 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGTGAATGAAATCTGTATG
19077628 CTTAGACATG-GAATGAAATCTGTATG
1 CTTAGAC-TGTGAATGAAATCTGTATG
19077654 C
1 C
19077655 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGTGAATGAAATCTGTATG
Found at i:19077764 original size:342 final size:341
Alignment explanation
Indices: 19076267--19077935 Score: 1487
Period size: 342 Copynumber: 4.9 Consensus size: 341
19076257 TACACTAGGA
** * * * ** * * *
19076267 ATGAACTCCGTATGTATAAGTCAACCCACAAAACGAGCGTACGGGCGTTGAGCC-AGTCGAAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGA-CCGGAGAG
** * * * * * *
19076331 GCATAATGCACAAGCC-GAAGATCAGCCCAGTCCCCCTCTGCCTGCTGCC-AGT-CTCGCTACCA
65 GCATAATGCGTAAGCCAG-GGATCAGCCCGGTCCCCCGCTGCATGCTACCGA-TCCT-GCTGCCA
*
19076393 CAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAA
127 CAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
*
19076458 ACGGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCTGGTCC
192 ACGGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GGT-C
* * * * * * *
19076523 CCCCCAGTGTGCTATCGATCCTGCTACCGTAACCCTCGATCTGGTCCAATCTTAGACTAGGAATG
255 CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACT-GGAATG
*
19076588 AACTTCGTATGCTTAGACTGAGG
319 AACTTCGTATGCTTAGACTGTGG
* * * *
19076611 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGGGCGCTCAGCC-AGCCAGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGA-CCGGAGAG
* * * * * ** * * * **
19076675 GCATAATGCATAAGTCGGGGATTAGCTCGGTCCCCTACTGCATGCTGCCAATCCCGCTGCCATGA
65 GCATAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCGCTGCATGCTACCGATCCTGCTGCCACAA
* * ***
19076740 CCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGTAGAAGCCAACCCACGAAACG
130 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* * *** * * * * * *
19076805 GGCATACGGGTGCTCAATGGGTTGGAGAGGCAGAATGCACAAGCCGGGTATCGACCCGATCCCCC
195 GGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-GCCGGTCCCCC
* ** *
19076870 CTAG-GTGCTGTCGATCCTACTGTAGCAACCCTCGATCTGG-CTCGATCTTAGA-TGCGGAATGA
259 CT-GCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTC-CGATCTTAGACT--GGAATGA
* *
19076932 ACTCCGTATGCTTAGACTGTTG
320 ACTTCGTATGCTTAGACTGTGG
* * * **
19076954 ATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAGCGT-CGGGGCGCTCAACCGGTCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGGCACTCAGCCGACCGGAGAG
* * * * * * * *
19077018 GCATAATGCGTAAGTC-GAGGATCAGCTCGATCCCCCGCTGCGTGCTGTCAGTTAC-GCTGCCAC
65 GCATAATGCGTAAGCCAG-GGATCAGCCCGGTCCCCCGCTGCATGCT-ACCGATCCTGCTGCCAC
* * *
19077081 AACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAA
128 AACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * *
19077146 CGGGCATGCGGGCGTTTAGCCGGTCGGAGAGGCAGAATGCGCATGCCGGGGATCGGCCTGAT-CC
193 CGGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GGTCCC
* * * *
19077210 CCCTACGTGCTGTCGTTCCTGCTGCCGCAACCCT-TAGTCCGGTCCGATCTTAGACTAAGAATGA
257 CCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACT-GGAATGA
*
19077274 ACTTCGTATGCTTAGACTGGGG
320 ACTTCGTATGCTTAGACTGTGG
* * * **
19077296 ATGAACTCCGCT-TGCCTAAGTCAACCAACGAAATGAGCGTGTGGGCACTCAGTCGGTCGGAGAG
1 ATGAACTCCG-TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAG
* * * * *
19077360 GCATAATGCGAAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTACCGGT-CTCGCTGCCACA
65 GCATAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCGCTGCATGCTACCGATCCT-GCTGCCACA
* *
19077424 ACCCTCGGTCC-AGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAA
129 ACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * * *
19077488 CGAGCATGTGGGTGCTCAGTCGACCGGAGAGGCAAAATGTGCAAGCTGGGGATCGGTCCGGTCCC
193 CGGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGGTCCC
* * *
19077553 CTCCTGCGTGATGCCGATCCTGCTGCCGCAACCCTCGATCCGGACCGATCTTAGACTGTGAATGA
257 C-CCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTG-GAATGA
*
19077618 AC-TCTGTATGCTTAGACATG-GA
320 ACTTC-GTATGCTTAGAC-TGTGG
* * * * * * * *
19077640 ATGAAATCTGTATGCCTAAGCCAACCTATGAAACGAGCGTGCAGGCACTTAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
* * * * * *
19077705 CAGAATGCCTAAGCCAGTGATC-GACCCGGT-CCCC-CTACATGCTATCGATCCTACTGCCACAA
66 CATAATGCGTAAGCCAGGGATCAG-CCCGGTCCCCCGCTGCATGCTACCGATCCTGCTGCCACAA
* ** * * * * *
19077767 CCCTCGGTCCGA-TCCGATCTTAGAC-TGGGAATGAACTTCGTATGCGTAAGTCAACCCATGAAA
130 CCCTCGGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* ** * * * * * ** * *
19077830 CGAGTGTGCGGGCGCTGAGCC-AGCCGAAAAGGCATAATGCGCAAGCTAGGAATCGGCCCAGTCA
193 CGGGCATGCGGGCGCTCAGCCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGGTC-
* * * *
19077894 CCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCC
255 CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCC
19077936 AGTTGGGGCT
Statistics
Matches: 1092, Mismatches: 196, Indels: 76
0.80 0.14 0.06
Matches are distributed among these distances:
340 1 0.00
341 8 0.01
342 431 0.39
343 297 0.27
344 347 0.32
345 8 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (341 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
CATAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCGCTGCATGCTACCGATCCTGCTGCCACAAC
CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
GCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTCCCCCCT
GCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGAATGAACTTCG
TATGCTTAGACTGTGG
Found at i:19078131 original size:26 final size:26
Alignment explanation
Indices: 19078102--19078154 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19078092 CTGATCCGAT
19078102 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19078128 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19078154 C
1 C
19078155 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19078862 original size:26 final size:27
Alignment explanation
Indices: 19078833--19078885 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
19078823 TCATAGACTG
*
19078833 GGAATGAACTCCATATG-CTTAGACAA
1 GGAATGAACTCCATATGCCTAAGACAA
*
19078859 GGAATGAACTCCGTATGCCTAAGACAA
1 GGAATGAACTCCATATGCCTAAGACAA
19078886 CCCACGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
GGAATGAACTCCATATGCCTAAGACAA
Found at i:19079147 original size:157 final size:157
Alignment explanation
Indices: 19078850--19079348 Score: 373
Period size: 157 Copynumber: 3.2 Consensus size: 157
19078840 ACTCCATATG
* *
19078850 CTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTACAGGGGCTCAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTACAAGCGCTCAGC
*** * * * * *
19078915 CGGTGGGAGAGGCAGAATGCGCAAGCTGAGGATCAACCCGATCCCCCCTGGTGTTGTCGATCCTG
66 CGACCGGAGAGGCAGAATGCGCAAGCAGAGGATCAACCCGATCCCCCCTGGTGCTGCCGACCCCG
*
19078980 CTACCGCAACCCTTGGTCTGATTCAAT
131 CTACCACAACCCTTGGTCTGATTCAAT
** * * *
19079007 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTGAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTACAAGCGCTCAGC
* *
19079072 CGACCGGAGAGGCATAATGCGCAAGTCAG-GGATCAGCCCGATCCCCCTCT-GTGCTGCC-AGCC
66 CGACCGGAGAGGCAGAATGCGCAAG-CAGAGGATCAACCCGATCCCCC-CTGGTGCTGCCGA-CC
* * ** * ** ****
19079134 CCGTTGCCACAACCCTCAGACTGGCTGGGG
128 CCGCTACCACAACCCTTGGTCTGATTCAAT
* * * * * **** * *
19079164 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCATGAAACG-GCCGTGTGGGTGCTCAA
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAG-CGTACAAGCGCTCAG
* * * * * *
19079228 TCGACCGGAGAGGCAAAATGCGCAAGCTA-AGGATTAGCCC-AGTCCCCCCTGCGTGCTACCGAT
65 CCGACCGGAGAGGCAGAATGCGCAAGC-AGAGGATCAACCCGA-TCCCCCCTG-GTGCTGCCGAC
* ** * * * * *
19079291 CCTGCTACCGTAACCCTCGATC-CAGTCTGAT
127 CCCGCTACCACAACCCTTGGTCTGATTC-AAT
**
19079322 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACAAGGAATGAACTCCGTATGC
19079349 TTGGACTGGG
Statistics
Matches: 268, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 6 0.02
157 211 0.79
158 50 0.19
159 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTACAAGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCAGAGGATCAACCCGATCCCCCCTGGTGCTGCCGACCCCG
CTACCACAACCCTTGGTCTGATTCAAT
Found at i:19079725 original size:26 final size:26
Alignment explanation
Indices: 19079687--19079736 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
19079677 CCTGTCTGAT
19079687 CTTAGACTGGGAATGAACTCCGTAGG
1 CTTAGACTGGGAATGAACTCCGTAGG
19079713 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
19079737 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAGG
Found at i:19079833 original size:365 final size:355
Alignment explanation
Indices: 19079140--19079842 Score: 862
Period size: 365 Copynumber: 2.0 Consensus size: 355
19079130 AGCCCCGTTG
* *
19079140 CCACAACCCTCAGACTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCAT
1 CCACAACCCTCAGACCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * *
19079205 GAAACGGCCGTGTGGGTGCTCAATCGACCGGAGAGGCAAAATGCGCAAGCTAAGGATTAGCCCAG
66 CAAACGGCCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCAAGGATCAGCCCAG
*
19079270 TCCCCCCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAA
131 TCCCCCCTACGTGCTACCGATCCTGCTACCGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAA
* * * *
19079335 TGAACTCCGTATGCTTGGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
196 TGAACTCCGTAGGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
* * * * * * *
19079400 AAGGGCGCTCAGCTAGTCGGAGAGGCATAATTCGTAAGCCGAGGATTAGCCCGGTCTCCCTATGC
261 AAGAGCACTCAGCCAATCGGAGAGGCAGAATTCGCAAGCCGAGGATCAGCCCGGTCTCCCTATGC
*
19079465 GTGCTGTCGATCCCACTGTCAGTCCTGCTA
326 GTGCTATCGATCCCACTGTCAGTCCTGCTA
*
19079495 CCACAACCCTC-GATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 CCACAACCCTCAGA-CCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* ** *
19079559 -CATAACGAG-CGTGCGGGCGCTCAGCCGACCGGAGAGGC-AAATGCACAAGCCGGGGATCAGTC
65 TCA-AACG-GCCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCAAGGATCAGCC
* * *
19079621 CGGTCCCCCCTACGTGCTGTCGATCCTGCTACGGTCCTGCTACCGTAACCCTCGGTCCTGTCTGA
128 CAGTCCCCCCTACGTGC--T--A-CC-G--A---TCCTGCTACCGTAACCCTCGATCCAGTCTGA
19079686 TCTTAGACTGGGAATGAACTCCGTAGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
182 TCTTAGACTGGGAATGAACTCCGTAGGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * *
19079750 CCATGAAACGAGCGTGCGAGCACTTAGCCAATCGGAGAGGCAGAATGT-GCAAGCCGGGGATCGG
246 CCACGAAACGAGCGTAAGAGCACTCAGCCAATCGGAGAGGCAGAAT-TCGCAAGCCGAGGATCAG
* *
19079814 CTCGGTGC-CCCTCTGCGTGCTATCGATCC
310 CCCGGT-CTCCCTATGCGTGCTATCGATCC
19079843 TGCTGCCACA
Statistics
Matches: 293, Mismatches: 38, Indels: 24
0.83 0.11 0.07
Matches are distributed among these distances:
354 36 0.12
355 87 0.30
356 2 0.01
358 1 0.00
359 2 0.01
360 1 0.00
362 1 0.00
365 160 0.55
366 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (355 bp):
CCACAACCCTCAGACCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
CAAACGGCCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCAAGGATCAGCCCAG
TCCCCCCTACGTGCTACCGATCCTGCTACCGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAA
TGAACTCCGTAGGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
AAGAGCACTCAGCCAATCGGAGAGGCAGAATTCGCAAGCCGAGGATCAGCCCGGTCTCCCTATGC
GTGCTATCGATCCCACTGTCAGTCCTGCTA
Found at i:19080120 original size:157 final size:159
Alignment explanation
Indices: 19079709--19080121 Score: 435
Period size: 159 Copynumber: 2.6 Consensus size: 159
19079699 ATGAACTCCG
* *
19079709 TAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACT
1 TAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCT
* * * * * *
19079774 TAGCCAATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTGCCCCTCTGCGTGCTATCG
66 CAGCCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATGCCCCTCTGCGTGCTACCG
*
19079839 ATCCTGCTGCCACAACCCTCTATCCGATC
131 ATCCCGCTGCCACAACCCTCTATCCGATC
** * * * * *
19079868 TAATCTTAGAC-TGGGAATAAACACCGTATGCCTAAGTCAACCCACGAAACAAGCATGC-AGGCG
1 TAGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA-GCG
* * * * *
19079931 CTGAGCTG-GCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGAT-CCCCTCTGCGTGCTA
64 CTCAGCCGATC-GGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATGCCCCTCTGCGTGCTA
*
19079994 CCGATCCCG-TGCCACAACCCT-TGATCTGA-C
128 CCGATCCCGCTGCCACAACCCTCT-ATCCGATC
* * * * * *
19080024 TGGGGCTTAGACATGGAATGACCTCCCTATGCCTAAGCCAACCCGCGAAACGAGTGTGCGAGTGC
1 T-AGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGC
* * * * *
19080089 TCAACCGATCAGAAAGGCAGGATGTGTAAGCCG
65 TCAGCCGATCGGAGAGGCAGAATGTGCAAGCCG
19080122 TCAAATGGGT
Statistics
Matches: 202, Mismatches: 44, Indels: 18
0.77 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 84 0.42
158 28 0.14
159 87 0.43
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (159 bp):
TAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCT
CAGCCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATGCCCCTCTGCGTGCTACCG
ATCCCGCTGCCACAACCCTCTATCCGATC
Found at i:19081046 original size:158 final size:159
Alignment explanation
Indices: 19080809--19081245 Score: 406
Period size: 158 Copynumber: 2.8 Consensus size: 159
19080799 TGGGTGCTCA
* * *
19080809 GCCGGTCGGAGAGGCAGAATGCGCAAGTC-AGGGATCGACCCGATCCCCC-CT-ATGTGCTGTCA
1 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGA-GGATCGGCTCGATCCCCCTCTGAT-TGCTGTCG
* * * * * *
19080871 ATCCTGCTACTGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAG
64 ATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCCTATGCCGAAG
* * * **
19080936 TCAACCCAGGAAACGAGAGTTCGGGCACTGT
129 CCAACCCACGAAACGAGAGTGCGGGCACTCC
* *
19080967 GCCGGTCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCTCGATCCCCCTCTGATTGCTG-CGGT
1 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGATCCCCCTCTGATTGCTGTCGAT
* * * ** * ** *
19081031 CCCGCTGCCACAACCCTCAGTTTG-GCTGGGGCTTAGACAT-GGAATGAGCTCCCTATGCCGAAG
66 CCTGCTGCCGCAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCCTATGCCGAAG
* * *
19081094 CCAACCCACGAAACGGGCGTGCGGGCATTCC
129 CCAACCCACGAAACGAGAGTGCGGGCACTCC
* * * * * * * *
19081125 GCCGGCCAGAGATGTAGAATACGCAAGCCGGGGATCGGCTCGAT-CCCCT-TGCTTGCTGTCGAT
1 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGATCCCCCTCTGATTGCTGTCGAT
* * * *
19081188 CATGCTGCCGCAACCCTCGGTCC-AGTCTGATCTTAGATTGGGACTGAACTCCATATGC
66 CCTGCTGCCGCAACCCTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCCTATGC
19081246 TTAGACTGGG
Statistics
Matches: 219, Mismatches: 51, Indels: 19
0.76 0.18 0.07
Matches are distributed among these distances:
156 9 0.04
157 49 0.22
158 150 0.68
159 9 0.04
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (159 bp):
GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGATCCCCCTCTGATTGCTGTCGAT
CCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCCTATGCCGAAGCC
AACCCACGAAACGAGAGTGCGGGCACTCC
Found at i:19081248 original size:26 final size:26
Alignment explanation
Indices: 19081219--19081271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19081209 CCAGTCTGAT
* *
19081219 CTTAGATTGGGACTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19081245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19081271 C
1 C
19081272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19081616 original size:26 final size:26
Alignment explanation
Indices: 19081587--19081639 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19081577 CCGGTCCGAT
19081587 CTTAAAC-TGGGAATGAACTCCGTATG
1 CTTAAACGT-GGAATGAACTCCGTATG
19081613 CTTAAACGTGGAATGAACTCCGTATG
1 CTTAAACGTGGAATGAACTCCGTATG
19081639 C
1 C
19081640 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACGTGGAATGAACTCCGTATG
Found at i:19082039 original size:159 final size:158
Alignment explanation
Indices: 19081612--19082042 Score: 384
Period size: 159 Copynumber: 2.7 Consensus size: 158
19081602 AACTCCGTAT
* * * *
19081612 GCTTAAACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* ** * * * ** * * * * *
19081677 TCGATCGAAGAGGCAGAATGCACAGGCCAGGGACCAACCCGGTCTCCCACTGCGTGCTATCAATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCACTACGTGCTATCAATC
* *
19081742 CTACTACCACAACCCTCAGTCTGGTCTGA
130 CTACTACCACAACCCTCAGTCTCGACTGA
* * * * **
19081771 TCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGGG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * * * * * * * *
19081836 CCAGCCAGTGAGGCATAATGCGCAAG-TCGGGGCTC-GTCCTGATCCCCCTCTACGTGCTGTCGA
65 CCGGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCAG-CCCGATCCCCCACTACGTGCTATCAA
* * ** *
19081899 TCCTGCTGCCACAACCCTTGGTC-CGACTGGG
128 TCCTACTACCACAACCCTCAGTCTCGACT-GA
* * *
19081930 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGG-GCCTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCG-CTCA
*
19081994 GCCGGCCGGAGAGGCAGAATGCGCATGCTGGGGATCAGCCCGATCCCCC
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCC
19082043 CTGTGTGCTG
Statistics
Matches: 209, Mismatches: 55, Indels: 16
0.75 0.20 0.06
Matches are distributed among these distances:
158 5 0.02
159 201 0.96
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCACTACGTGCTATCAATCC
TACTACCACAACCCTCAGTCTCGACTGA
Found at i:19082119 original size:26 final size:26
Alignment explanation
Indices: 19082090--19082142 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19082080 CCGATCCAAT
19082090 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
19082116 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
19082142 C
1 C
19082143 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:19082872 original size:26 final size:26
Alignment explanation
Indices: 19082830--19082879 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
19082820 GGGTCAAACT
19082830 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
19082856 CTTAGACAT-GGACTGAACTTCGTA
1 CTTAGAC-TGGGAATGAACTTCGTA
19082880 CGCCTAAGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19083200 original size:26 final size:26
Alignment explanation
Indices: 19083171--19083223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19083161 CCGATTAGAT
*
19083171 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
*
19083197 CTTAGACTGAGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
19083223 C
1 C
19083224 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:19083846 original size:26 final size:26
Alignment explanation
Indices: 19083810--19083865 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19083800 CCGGTTTGAT
19083810 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
19083836 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19083862 CTTA
1 CTTA
19083866 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19084307 original size:368 final size:360
Alignment explanation
Indices: 19083612--19084294 Score: 825
Period size: 368 Copynumber: 1.8 Consensus size: 360
19083602 CCCTCTGCGT
* *
19083612 GCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGGTCCCGCTGCCACAACCCTCGGTCGGACTAGGGCTTAGACATGGAATGAACTCCCTAT
*
19083677 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAGTCAACCGACCGGAGAGGTAGAATGCGTAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCA-TCAACCGACCGAAGAGGTAGAATGCGTAAG
* ** * *
19083742 CTGGGGATTGGCTCGGTTGCCTCTGCATGCTGCCGATCCTGCTGTCACAACCCTCGATCCGGTTT
130 CTGGGGATTGGCTCGATCCCCTCTGCATGCTACCGATCCTGCTGTCACAACCCTCGATCCGGTCT
* * * *
19083807 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCTTAAGTCAA
195 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGAGAATGAACTCCGTATGCTTAAGCCAA
* * *
19083872 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCCAGCCAGAGAGGCATAATGCGCA
260 CCCACGAAACGAGCATGCGGGCGATCAGCCGGCCGAAGAGGCCAG-CAGAGA-GC---A--CGCA
19083937 AGTCGAGGATCAACCCGGTCCCTCTCTACGTGCTGCCAATCCC
318 AGTCGAGGATCAACCCGGTCCCTCTCTACGTGCTGCCAATCCC
** * * * **
19083980 GCTGTCGGTCTTGCTGTCACAACCTTCGGTCGGGCTAGGGCTTAGACATGGAATGAACTCTGTAT
1 GCTGTCGGTCCCGCTGCCACAACCCTCGGTCGGACTAGGGCTTAGACATGGAATGAACTCCCTAT
* *
19084045 GCCTAAGCCAACCCATGGAACGAGCGTGCGAGTGC-TCAGCCGGA-CGAAGAGGTAGAATGCGTA
66 GCCTAAGCCAACCCATGAAACGAGCGTGCG-G-GCATCAACC-GACCGAAGAGGTAGAATGCGTA
** *
19084108 AGCTGGGGATTGGCTCGATCCCCTTCTGTGTGCTATCGATCCTACTGCTGGTCCTACTACCTTAA
128 AGCTGGGGATTGGCTCGATCCCC-TCTGCATGCTACCGAT-C--CTGCT-G---T-C-A-C--AA
19084173 CCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAT-AGAATGAACT
180 CCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGAGAATGAACT
* * * *
19084236 CCGTATGCTTAAGCCAACCCACGAAACGAGCATGCGGGTGATCCGCCGGTCGGAGAGGC
243 CCGTATGCTTAAGCCAACCCACGAAACGAGCATGCGGGCGATCAGCCGGCCGAAGAGGC
19084295 AGAAACCGCA
Statistics
Matches: 266, Mismatches: 31, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
368 128 0.48
369 15 0.06
370 3 0.01
372 5 0.02
373 1 0.00
376 1 0.00
377 1 0.00
378 1 0.00
379 1 0.00
380 1 0.00
381 108 0.41
382 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (360 bp):
GCTGTCGGTCCCGCTGCCACAACCCTCGGTCGGACTAGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATCAACCGACCGAAGAGGTAGAATGCGTAAGC
TGGGGATTGGCTCGATCCCCTCTGCATGCTACCGATCCTGCTGTCACAACCCTCGATCCGGTCTG
ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGAGAATGAACTCCGTATGCTTAAGCCAAC
CCACGAAACGAGCATGCGGGCGATCAGCCGGCCGAAGAGGCCAGCAGAGAGCACGCAAGTCGAGG
ATCAACCCGGTCCCTCTCTACGTGCTGCCAATCCC
Found at i:19084519 original size:159 final size:157
Alignment explanation
Indices: 19084227--19084718 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 157
19084217 CTTAGACATA
* * * *
19084227 GAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCATGCGGGTGATCCGCCGGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGA
* ** * * * * *
19084292 GGCAGAA-ACCGCAAGTTGGGGACCGGCCC-AGTCCCCCCCTCCGTGCTATCGATCCTACTACCG
66 GGCATAATA-CGCAAGCCGGGGATCGGCCCGA-T-CCCCCCTGCGTGCTGTCGATCCTGCTGCCG
* *
19084355 TAACCCTTGGTCCGGTCCGATATTAGACTGG
128 CAACCCTTGGTCC-GTCCGATCTTAGACTGG
* * *
19084386 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTGAGCCGGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGA
* * * * * *
19084451 GGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCTTGTTGCCACA
66 GGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCA
* * * **
19084516 ACCCTCGGTCCGACTGGGGCTTAGACAT-G
130 ACCCTTGGTCCGTC-CGATCTTAGAC-TGG
** * * * * **
19084545 GAATGAACTACC-TATGCCTAAGCCAATTCATGAAACGGGCGTGCGGGCGCTTAGCCGACCGGAG
1 GAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAG
* * * * * *
19084609 AGGCATAATACACAAGCC-GGGATCGGCCTGGTCCCCCGTGTGTGTTGTCGATCCTGCTGCCGCA
65 AGGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
19084673 ACCCTTGGTCCAGTCCGATCTTAGACTGG
130 ACCCTTGGTCC-GTCCGATCTTAGACTGG
*
19084702 GAATGAACTCCTTATGC
1 GAATGAACTCCGTATGC
19084719 TTAAACTGGG
Statistics
Matches: 269, Mismatches: 55, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 52 0.19
158 26 0.10
159 184 0.68
160 4 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGA
GGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAA
CCCTTGGTCCGTCCGATCTTAGACTGG
Found at i:19084728 original size:26 final size:26
Alignment explanation
Indices: 19084692--19084744 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19084682 CCAGTCCGAT
* * *
19084692 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAAACTGGGAATCAACTCCGTATG
*
19084718 CTTAAACTGGGGATCAACTCCGTATG
1 CTTAAACTGGGAATCAACTCCGTATG
19084744 C
1 C
19084745 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATCAACTCCGTATG
Found at i:19085066 original size:171 final size:171
Alignment explanation
Indices: 19084717--19085083 Score: 436
Period size: 171 Copynumber: 2.1 Consensus size: 171
19084707 AACTCCTTAT
* * * *
19084717 GCTTAAACTGGGGATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
19084782 TCGGTTGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCTTCTTCGTGCTGTCGATC
66 TCGGCTGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
* * * * *
19084847 TCGCTGTCGGTCCCGCTATCACAACCCTTGGTCTAGCTGGG
131 TCGCTGTCAGTCCCGCTATCACAACCCTCGATCCAGCTGGA
* * *
19084888 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
19084952 GTCGGCTGAAGAGGCAGAATGCGCAAG-CTGGGGATCAGCCTGATCCCCCTCTGCGTGTTGTCGA
65 GTCGGCTGAAGAGGCAGAATGCGCAAGTC-GGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGA
* * * * * *
19085016 TCTTGCTG-CTAGTCCTGTTGTCGCAACCCTCGATCCGGTCT-GA
129 TCTCGCTGTC-AGTCCCGCTATCACAACCCTCGATCCAG-CTGGA
*
19085059 TCTTAGACTGGGAATGAACTCCGTA
1 GCTTAGACTGGGAATGAACTCCGTA
19085084 GGCTTAGACA
Statistics
Matches: 164, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
170 3 0.02
171 158 0.96
172 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGCTGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
TCGCTGTCAGTCCCGCTATCACAACCCTCGATCCAGCTGGA
Found at i:19085208 original size:869 final size:873
Alignment explanation
Indices: 19083403--19085357 Score: 2425
Period size: 869 Copynumber: 2.2 Consensus size: 873
19083393 GTTCAGCTAA
* * * ** * * * *
19083403 CCAGAGAGGCAGAAGGCATAAGTCAAGGATTGGCTCGATCCCCCTTACGTGCTGTCGATCCTGCT
1 CCAGAGAGGCAGAAAGCACAAGTCAGGGACCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCT
* * * * *
19083468 GCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCA
66 ACCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** *
19083533 CCAAACGAGCGT-TCGGGCGCTAAGCCAATCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCC
131 CGAAACGAGCGTGT-GGGTGCTAAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCC
* *
19083597 GATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATG
195 GATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATG
*
19083662 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAGTCAACCGACCGGAGA
260 GAATGAACTACCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAGTCAACCGACCGGAGA
* * ** * * * * *
19083727 GGTAGAATGCGTAAGCTGGGGATTGGCTCGGTTGCCTCTGCATGCTGCCGATCCTGCTGTCACAA
325 GGCAGAATACACAAGCTCGGGATCGGCTCGGTTCCCCCTGCATGCTGCCGATCCTGCTGCCACAA
* ** * * * *
19083792 CCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTTC
390 CCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATCAACTCC
* *
19083857 GTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCCAGCCAGA
455 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA--C-GCC----AGGCCAG-C-GA
*
19083922 GAGGCATAATGCGCAAGTCGAGGATCAACCCGGTCCCTCTCTACGTGCTGCCAATCCCGCTGTCG
511 GAGGCATAATGCGCAAGTCGAGGATCAACCCGATCCCTCTCTACGTGCTGCCAATCCCGCTGTCG
** * *
19083987 GTCTTGCTGTCACAACCTTCGGTCGGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAG
576 GTCCCGCTATCACAACCTTCGGTCGAGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAG
* * *
19084052 CCAACCCATGGAACGAGCGTGCGAGTGCTCAGCCGGACGAAGAGGTAGAATGCGTAAGCTGGGGA
641 CCAACCCATGAAACGAGCGTGCGAGTGCTCAGCCGGACGAAGAGGCAGAATGCGCAAGCTGGGGA
* * * * * **
19084117 TTGGCTCGATCCCCTTCTGTGTGCTATCGATCCTACTGCTGGTCCTACTACCTTAACCCTCAGTC
706 TAGCCTCGATCCCCCTCTGCGTGCTATCGATCCTACTGCTAGTCCTACTACCGCAACCCTCAGTC
* * *
19084182 CGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATAGAATGAACTCCGTATGCTTA
771 CGGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCTTAGACATAGAATGAACTCCGTATGCCTA
* ** *
19084247 AGCCAACCCACGAAACGAGCATGCGGGTGATCCGCCGG
836 AGCCAACCCACGAAACGAGCATGCGAGTGATCAACCAG
* * * * ** * * *
19084285 TCGGAGAGGCAGAAACCGCAAGTTGGGGACCGGCCCAGTCCCCCCCTCCGTGCTATCGATCCTAC
1 CCAGAGAGGCAGAAAGCACAAGTCAGGGACCGGCCCGGT-CCCCCCTACGTGCTATCGATCCTGC
*
19084350 TACCGTAACCCTTGGTCCGGTCCGATATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
65 TACCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
*
19084415 ACGAAACGAGCGTGTGGGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCC
130 ACGAAACGAGCGTGTGGGTGCTAAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCC
** *
19084480 GATCCCCCTCTGCGTGCTGCCGGTCTTGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATG
195 GATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATG
** * * *
19084545 GAATGAACTACCTATGCCTAAGCCAATTCATGAAACGGGCGTGCGGGC-GCTTAGCCGACCGGAG
260 GAATGAACTACCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAG-TCAACCGACCGGAG
* ** * * *
19084609 AGGCATAATACACAAGC-CGGGATCGGC-CTGG-TCCCCCGTGTGTGTTGTCGATCCTGCTGCCG
324 AGGCAGAATACACAAGCTCGGGATCGGCTC-GGTTCCCCC-TGCATGCTGCCGATCCTGCTGCCA
* * *
19084671 CAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAAACTGGGGATCAAC
387 CAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATCAAC
* **
19084736 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GTC-GG-TTG-GAGAGGCA
452 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACGCCAGGCCAGCGAGAGGCA
* * * * * *
19084797 TAATGCGCAAGTCGGGGATCAGCCCGATCCC-CTTCTTCGTGCTGTCGATCTCGCTGTCGGTCCC
517 TAATGCGCAAGTCGAGGATCAACCCGATCCCTC-TCTACGTGCTGCCAATCCCGCTGTCGGTCCC
* *
19084861 GCTATCACAACCCTT-GGTCTAGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
581 GCTATCACAA-CCTTCGGTCGAGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* *
19084925 CCCATGAAACGAGCGTGCGGGTGCTCAGTCGG-CTGAAGAGGCAGAATGCGCAAGCTGGGGATCA
645 CCCATGAAACGAGCGTGCGAGTGCTCAGCCGGAC-GAAGAGGCAGAATGCGCAAGCTGGGGAT-A
* * * * ** **
19084989 GCCT-GATCCCCCTCTGCGTGTTGTCGATCTTGCTGCTAGTCCTGTTGTCGCAACCCTC-GATCC
708 GCCTCGATCCCCCTCTGCGTGCTATCGATCCTACTGCTAGTCCTACTACCGCAACCCTCAG-TCC
*
19085052 GGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCTTAGACATGGAATGAACTCCTGTATGCCTA
772 GGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCTTAGACATAGAATGAACTCC-GTATGCCTA
* *
19085117 AGCCAACCCATGAAACGAGCGTGCGAGTGATCAACCAG
836 AGCCAACCCACGAAACGAGCATGCGAGTGATCAACCAG
* *
19085155 CCAGAGAGGCAGAAAGCACAAGTCAGGGACCGACCCGGTCCCCCCTACGTGCTA-CTGATCTTGC
1 CCAGAGAGGCAGAAAGCACAAGTCAGGGACCGGCCCGGTCCCCCCTACGTGCTATC-GATCCTGC
*
19085219 TACCGTAACCCTTGGTCCGGTCCGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
65 TACCGTAACCCTTGGTCCGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * **
19085283 CATGAAACG-GACGTG-CGGTCGCTCAGCCGGTTGGAGATGCAGAATGTGCAAGCTAGGGATCGG
129 CACGAAACGAG-CGTGTGGGT-GCTAAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGG
*
19085346 CCCGGTCCCCCT
192 CCCGATCCCCCT
19085358 ATATGCTGTC
Statistics
Matches: 921, Mismatches: 137, Indels: 43
0.84 0.12 0.04
Matches are distributed among these distances:
868 8 0.01
869 406 0.44
870 79 0.09
872 1 0.00
873 2 0.00
878 2 0.00
881 5 0.01
882 152 0.17
883 265 0.29
884 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (873 bp):
CCAGAGAGGCAGAAAGCACAAGTCAGGGACCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCT
ACCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGTGGGTGCTAAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCG
ATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
AATGAACTACCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAGTCAACCGACCGGAGAG
GCAGAATACACAAGCTCGGGATCGGCTCGGTTCCCCCTGCATGCTGCCGATCCTGCTGCCACAAC
CCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATCAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACGCCAGGCCAGCGAGAGGCATAAT
GCGCAAGTCGAGGATCAACCCGATCCCTCTCTACGTGCTGCCAATCCCGCTGTCGGTCCCGCTAT
CACAACCTTCGGTCGAGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATG
AAACGAGCGTGCGAGTGCTCAGCCGGACGAAGAGGCAGAATGCGCAAGCTGGGGATAGCCTCGAT
CCCCCTCTGCGTGCTATCGATCCTACTGCTAGTCCTACTACCGCAACCCTCAGTCCGGTCTGATC
TTAGACTGGGAATGAACTCCGTAGGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACGAGCATGCGAGTGATCAACCAG
Found at i:19085438 original size:26 final size:26
Alignment explanation
Indices: 19085402--19085454 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19085392 CCAGTCCGAT
*
19085402 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19085428 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19085454 C
1 C
19085455 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19085637 original size:26 final size:26
Alignment explanation
Indices: 19085599--19085651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19085589 CCGGTCTGAT
*
19085599 CTTAGACAGGGAATGAACTTTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
*
19085625 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
19085651 C
1 C
19085652 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCTGTATG
Found at i:19085999 original size:159 final size:158
Alignment explanation
Indices: 19085624--19086002 Score: 397
Period size: 158 Copynumber: 2.4 Consensus size: 158
19085614 AACTTTGTAT
* * * *
19085624 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCTCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** * ** *
19085689 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACCAGCCCGATCCCCCCTGTGTGCTGTCAATCC
66 CCAACCAGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGATCCCCCCTGCATGCTGCCAATCC
* *
19085754 TACTGCCGCAACCCTCGATCCGATCTGA
131 CACTGCCACAACCCTCGATCCGATCTGA
* ** * * *
19085782 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * *
19085846 CCCAACC-GAAGAGGCATAATGCGTAAGTCGAGGATCAGCCC-AGTCCCCCTCTGCATGCTGCCG
65 ACCAACCAG-AGAGGCAGAATGCACAAGCCGAGGACCAGCCCGA-TCCCCC-CTGCATGCTGCCA
* * * *
19085909 ATCCCGCTGCCACAACCTTCGGTCCG-TCTAGG
127 ATCCCACTGCCACAACCCTCGATCCGATCT-GA
* * *
19085941 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
19086003 TAGCCGGTCG
Statistics
Matches: 179, Mismatches: 36, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 92 0.51
159 83 0.46
160 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCAACCAGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGATCCCCCCTGCATGCTGCCAATCC
CACTGCCACAACCCTCGATCCGATCTGA
Found at i:19086051 original size:159 final size:158
Alignment explanation
Indices: 19085624--19086052 Score: 439
Period size: 159 Copynumber: 2.7 Consensus size: 158
19085614 AACTTTGTAT
* * * *
19085624 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCTCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * ** *
19085689 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACCAGCCCGATCCCCCCTGTGTGCTGTCAATCC
66 CCGGCCGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTGCCAATCC
* *
19085754 TACTGCCGCAACCCTCGATCCGATCTGA
131 CACTGCCACAACCCTCGATCCGATCTGA
* ** * * *
19085782 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * *
19085846 CCCAACCGAAGAGGCATAATGCGTAAGTCGAGGATCAGCCCAGTCCCCCTCTGCATGCTGCCGAT
65 ACCGGCCGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCC-CTGCATGCTGCCAAT
* * * *
19085911 CCCGCTGCCACAACCTTCGGTCCG-TCTAGG
129 CCCACTGCCACAACCCTCGATCCGATCT-GA
* * * * *
19085941 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
19086006 CCGGTCGGAGAGGCATAATGCATAAGCCGAGAATCGGCTCGGTCCCC
66 CCGGCCGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCC
19086053 TTGCGTGCTA
Statistics
Matches: 215, Mismatches: 52, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
157 1 0.00
158 92 0.43
159 121 0.56
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTGCCAATCC
CACTGCCACAACCCTCGATCCGATCTGA
Found at i:19086128 original size:26 final size:26
Alignment explanation
Indices: 19086099--19086151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19086089 CTGGTCCGAT
19086099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19086125 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19086151 C
1 C
19086152 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19086553 original size:158 final size:157
Alignment explanation
Indices: 19086283--19086795 Score: 528
Period size: 159 Copynumber: 3.2 Consensus size: 157
19086273 GTAACCCTCA
* * ** *
19086283 ATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTG
1 ATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
* * ** * * * * *
19086348 CAGGCACTCTGTTGGCCGGAGAGGCAGAATGCATAAGTCGGGGATCGGTCCGGTCCCCCCTGCGT
65 CGGGCACTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGT
19086413 GCTATCAATACTGCTGCCACAACACTCCG
130 GCTATCAATACTGCTGCCACAACACT-CG
* *
19086442 -TCCGGTCCGATCTTAGACTGGAAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTT
1 ATCCGGTCCGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
** * *
19086506 CGGGCACAGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCA
65 CGGGCACTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCC-CTGCG
* ** * *
19086571 TGCTGTCGGTCCTGCTGCCACAACCCTCG
129 TGCTATCAATACTGCTGCCACAACACTCG
* * ** * *
19086600 ATCTGG-CTGGGGCTTAGACATGGAATGAAGTCCCTATGCCTAAGTCAACCCACGAAATGAGCGT
1 ATCCGGTC-CGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
** * *
19086664 GCGGGTGCTCAGCCGGTTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGAT-CCCCCTACG
64 GCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCG
* * * * * *
19086728 TGCTACCAATCCTGTTGTCGCAACCCTCG
129 TGCTATCAATACTGCTGCCACAACACTCG
* * * * *
19086757 ATCTGATCCGATCATAGATTGGGAATGAACTCCATATGC
1 ATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGC
19086796 TTAGATTGGG
Statistics
Matches: 291, Mismatches: 56, Indels: 16
0.80 0.15 0.04
Matches are distributed among these distances:
156 1 0.00
157 54 0.19
158 109 0.37
159 124 0.43
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
ATCCGGTCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
GGGCACTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTG
CTATCAATACTGCTGCCACAACACTCG
Found at i:19086810 original size:26 final size:26
Alignment explanation
Indices: 19086771--19086821 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19086761 GATCCGATCA
19086771 TAGATTGGGAATGAACTCCATATGCT
1 TAGATTGGGAATGAACTCCATATGCT
* *
19086797 TAGATTGGGGATGAACTCCGTATGC
1 TAGATTGGGAATGAACTCCATATGC
19086822 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGATTGGGAATGAACTCCATATGCT
Found at i:19086907 original size:670 final size:668
Alignment explanation
Indices: 19085624--19087520 Score: 2233
Period size: 670 Copynumber: 2.8 Consensus size: 668
19085614 AACTTTGTAT
* * * * * *
19085624 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCTCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * *
19085689 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACCAGCCCGATCCCCCCTGTGTGCTGTCAATCC
66 CCGGCCAGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCAATCC
* * *
19085754 TACTGCCGCAACCCT-CGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGA
131 TACTGCCGCAACACTCCG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *** * ** * *
19085818 ACCCACGAAATGAGCGTACGGGCGCTGACCCAACCGAAGAGGCATAATGCGTAAGTCGAGGATCA
195 ACCCACGAAATGAGCGTTCGGGCACTGAACCGGTCGGAGAGGCATAATGCACAAGTCGGGGATCG
* * * * *
19085883 GCCCAGTCCCCCTCTGCATGCTGCCGATCCCGCTGCCACAACCTTCGGTCCGTCTAGGGCTTAGA
260 GCCCA-TCCCCCTCTGCATGCTGCCGGTCCTGCTGCCACAACCCTCGGT-CGGCTGGGGCTTAGA
* * *
19085948 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTTAGCCGGTCG
323 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGCGCTCAGCCGGTCG
* * * * *
19086013 GAGAGGCATAATGCATAAGCCGAGAATCGGCTCGGTCCCCTTGCGTGCTATCGATCCTGTTACCG
387 GAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCTGCGTGCTACCGATCCTGTTACCG
* *
19086078 TAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
452 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
* * * *
19086143 TTCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTCAGCCGACCGGAAAGGTAGAAT
517 TCCGTATGCCTAAGTCAACCCATGAAACGAGCACGCGGGCACTCAGCCGACCGGAAAGGCAGAAT
* * *** * *
19086208 GCACAAGCTGGGGATTGGTCCATTCCCCCT-TACGTGCTGCCGATCCTGCTGCTGGT-TCTGCTA
582 GCACAAACTAGGGATAACTCCAGTCCCCCTCTACGTGCTGCCGATCCCGCTGCTGGTCT-TGCTA
*
19086271 CCGTAACCCTCAATCCGGTCCAA
646 CCATAACCCTCAATCCGGTCCAA
* * * *
19086294 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGCACTCT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
** * * * * *
19086358 GTTGGCCGGAGAGGCAGAATGCATAAGTCGGGGATCGGTCCGGTCCCCCCTGCGTGCTATCAATA
65 GCCGGCCAGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCAATC
* * * * *
19086423 CTGCTGCCACAACACTCCGTCCGGTCCGATCTTAGACTGGAAATGAACTACGTATGCCTAAGTCA
130 CTACTGCCGCAACACTCCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
19086488 ACCCACGAAATGAGCGTTCGGGCACAGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCG
195 ACCCACGAAATGAGCGTTCGGGCACTGAACCGGTCGGAGAGGCATAATGCACAAGTCGGGGATCG
* *
19086553 GCCCGATCCCCCTCTGCATGCTGTCGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGA
260 GCCC-ATCCCCCTCTGCATGCTGCCGGTCCTGCTGCCACAACCCTCGGTC-GGCTGGGGCTTAGA
* * * *
19086618 CATGGAATGAAGTCCCTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTTG
323 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGCGCTCAGCCGGTCG
* * * * * **
19086683 GAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTACCAATCCTGTTGTCG
387 GAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCTGCGTGCTACCGATCCTGTTACCG
* * * * * *
19086748 CAACCCTCGATCTGATCCGATCATAGATTGGGAATGAACTCCATATGCTTAGATTGGGGATGAAC
452 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
* * * * ** * *
19086813 TCCGTATGCCTAAGTTAACACACGAAACGAGCGCGCGGGCACTCAGCCGGTCGGAGAGGCATAAT
517 TCCGTATGCCTAAGTCAACCCATGAAACGAGCACGCGGGCACTCAGCCGACCGGAAAGGCAGAAT
** ** * *
19086878 GCGTAAACTAGGGATCAACT-GGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGTTGGTCTTGCTA
582 GCACAAACTAGGGAT-AACTCCAGTCCCCCTCTACGTGCTGCCGATCCCGCTGCTGGTCTTGCTA
** * ****
19086942 CCATAACCCTCGGTCTGGTTGGG
646 CCATAACCCTCAATCCGGTCCAA
* * * *
19086965 GCTTAGACATGGAATGATCTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
19087030 CCGACTAGAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTTGCATGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCAATCC
* * *
19087095 TACTGTCGCAACACTCGGTCCGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAA
131 TACTGCCGCAACACTCCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
19087160 CCCACAAAACGAGCGTTCGGGCATTGAACCGGTCGGAGAGGCATAATGCACAAGTCGGGGATCGA
196 CCCACGAAATGAGCGTTCGGGCACTGAACCGGTCGGAGAGGCATAATGCACAAGTCGGGGATCGG
* * * * *
19087225 CCCTAT-CCCCTCCGCATGCTACCAGTCCTACTGCCACAACCCTCGGTACGGCTGGGGCTTAGAA
261 CCC-ATCCCCCTCTGCATGCTGCCGGTCCTGCTGCCACAACCCTCGGT-CGGCTGGGGCTTAGAC
* * * *
19087289 ATGGAATG-ACTCCCTATGCCCAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAGCCAGCCGG
324 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGA-GCGTGCGGGCGCTCAGCCGGTCGG
* ** ** * * * *
19087353 AGAGGCAGAATGCGCAAGTTGAGGATCGATTCGGTCCCCCCTGCGTGCTGCTGATCTTGCTACCG
388 AGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGT-CCCCCTGCGTGCTACCGATCCTGTTACCG
* *
19087418 TAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
452 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
* * *
19087483 TCCATTTGCCTAAGTCAACCCATGAAACGAGCATGCGG
517 TCCGTATGCCTAAGTCAACCCATGAAACGAGCACGCGG
19087521 ACGCTCAGTC
Statistics
Matches: 1019, Mismatches: 197, Indels: 22
0.82 0.16 0.02
Matches are distributed among these distances:
668 1 0.00
669 75 0.07
670 669 0.66
671 272 0.27
672 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (668 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
CCGGCCAGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCAATCC
TACTGCCGCAACACTCCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAATGAGCGTTCGGGCACTGAACCGGTCGGAGAGGCATAATGCACAAGTCGGGGATCGG
CCCATCCCCCTCTGCATGCTGCCGGTCCTGCTGCCACAACCCTCGGTCGGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
GGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCTGCGTGCTACCGATCCTGTTACCGTAAC
CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCG
TATGCCTAAGTCAACCCATGAAACGAGCACGCGGGCACTCAGCCGACCGGAAAGGCAGAATGCAC
AAACTAGGGATAACTCCAGTCCCCCTCTACGTGCTGCCGATCCCGCTGCTGGTCTTGCTACCATA
ACCCTCAATCCGGTCCAA
Found at i:19087219 original size:158 final size:155
Alignment explanation
Indices: 19086966--19087465 Score: 380
Period size: 158 Copynumber: 3.2 Consensus size: 155
19086956 CTGGTTGGGG
* * * * * *
19086966 CTTAGACATGGAATGATCTCCGTATGCCTAAGCCAACCCACAAAA-TGAGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGAATGA-CTCCATATGCCCAAGCCAACCCACAAAACAG-GCGTGCGGGCACTCAA
** * * ** *
19087030 CC-GACTAGAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTTGCATGCTGTCGATC
63 CCAG-CCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCTTGCATGCTG-CGATC
* *
19087094 CTACTGTCGCAACACTCGGTCCGGTCTGAT
126 CTACTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * * *
19087124 CTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACAAAAC-GAGCGTTCGGGCATTGAA
1 CTTAGACT-GGAATGA-CTCCATATGCCCAAGCCAACCCACAAAACAG-GCGTGCGGGCACTCAA
* * * ** * * *
19087188 CCGGTCGGAGAGGCATAATGCACAAGTCGGGGATCGACCCTAT-CCCCTCCGCATGCTACCAGTC
63 CCAGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCT-TGCATGCTGCGA-TC
* * **
19087252 CTACTGCCACAACCCTCGGTACGG-CTGGGG
126 CTACTGCCGCAACCCTCGGTCCGGTCT-GAT
* * * * *
19087282 CTTAGAAATGGAATGACTCCCTATGCCCAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAGCC
1 CTTAG-ACTGGAATGACTCCATATGCCCAAGCCAACCCACAAAACAGGCGTGCGGGCACTCAACC
* * * ** * * * *
19087347 AGCCGGAGAGGCAGAATGCGCAAGTTGAGGATCGATTCGGTCCCCCCTGCGTGCTGCTGATCTTG
65 AGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCTTGCATGCTGC-GATCCTA
* * *
19087412 CTACCGTAACCCTCGGTCCGGTCCGAT
129 CTGCCGCAACCCTCGGTCCGGTCTGAT
19087439 CTTAGACTAGGAATGAACTCCATATGC
1 CTTAGACT-GGAATG-ACTCCATATGC
19087466 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 64, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 118 0.45
158 142 0.54
159 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACTGGAATGACTCCATATGCCCAAGCCAACCCACAAAACAGGCGTGCGGGCACTCAACCA
GCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCTTGCATGCTGCGATCCTACT
GCCGCAACCCTCGGTCCGGTCTGAT
Found at i:19087391 original size:157 final size:156
Alignment explanation
Indices: 19086946--19087392 Score: 397
Period size: 158 Copynumber: 2.8 Consensus size: 156
19086936 TTGCTACCAT
* * *
19086946 AACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGATCTCCGTATGCCTAAGCCAACCCACAAA-
1 AACCCTCGGTC-GGCTGGGGCTTAGAAATGGAATGAGCTCCGTATGCCTAAGCCAACCCACAAAC
* ** * * * *
19087010 ATGAGCGTGTGGGCGCTCAGCCGACTAGAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGGTCC
65 A-GAGCGTGCGGGCGCTCAGCCG-CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCC
* ** * *
19087075 CCCTTGCATGCTGTCGATCCTACTGTCGC
128 CCCTCGCATGCTACCGATCCTACTGCCAC
* ** * *
19087104 AACACTCGGTCCGGTCT-GATCTTAG-ACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACAA
1 AACCCTCGGT-CGG-CTGGGGCTTAGAAAT-GGAATGAGCTCCGTATGCCTAAGCCAACCCACAA
* ** * * * * * **
19087167 A-ACGAGCGTTCGGGCATTGAACCGGTCGGAGAGGCATAATGCACAAGTCGGGGATCGACCCTAT
63 ACA-GAGCGTGCGGGCGCTCAGCC-GCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGT
19087231 -CCCCTCCGCATGCTACC-AGTCCTACTGCCAC
126 CCCCCT-CGCATGCTACCGA-TCCTACTGCCAC
* *
19087262 AACCCTCGGTACGGCTGGGGCTTAGAAATGGAATGA-CTCCCTATGCCCAAGCCAACCCACGAAA
1 AACCCTCGGT-CGGCTGGGGCTTAGAAATGGAATGAGCTCCGTATGCCTAAGCCAACCCAC-AAA
* * **
19087326 CAG-GCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTTGAGGATCGATTCGGTCC
64 CAGAGCGTGCGGGCGCTCAGCC-GCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCC
19087390 CCC
128 CCC
19087393 CTGCGTGCTG
Statistics
Matches: 224, Mismatches: 54, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
157 74 0.33
158 144 0.64
159 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
AACCCTCGGTCGGCTGGGGCTTAGAAATGGAATGAGCTCCGTATGCCTAAGCCAACCCACAAACA
GAGCGTGCGGGCGCTCAGCCGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCC
TCGCATGCTACCGATCCTACTGCCAC
Found at i:19088359 original size:26 final size:26
Alignment explanation
Indices: 19088323--19088375 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19088313 CTAGTCTGAA
19088323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19088349 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19088375 C
1 C
19088376 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19088822 original size:159 final size:159
Alignment explanation
Indices: 19088521--19088883 Score: 349
Period size: 159 Copynumber: 2.3 Consensus size: 159
19088511 TGACCTGGGC
* * *
19088521 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCGTGCGGGCCCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCATAAGCTAACCCACGAAACAAGCGTACGGGCACTCAGCC
* * * * * * * * *
19088586 GGTAGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTTGCGTGCTGTCAATCCT
66 GATAGAAGAGGCAGAATGCGCAAGCCAAGAATCGACCCGATCCCCCCTTGCGTACTGTCAATCCC
* **
19088651 GCTATCGTAACCCTTGGTCTGGTATGATT
131 GCTACCACAACCCTTGGTCTGGTATGATT
* * *
19088680 TTAGAC-TGGTAATGAACTCCGTATGCATAAG-TCAACCCATGAAACAAGTGTACGGGCACTGAG
1 TTAGACATGG-AATGAACTCCGTATGCATAAGCT-AACCCACGAAACAAGCGTACGGGCACTCAG
* * * * **
19088743 CCGATTGAAGTGGCATAATGCGCAAGCCAAGAATCGACTCGAT-CCCCCTCTGCGTACTGTCGGT
64 CCGATAGAAGAGGCAGAATGCGCAAGCCAAGAATCGACCCGATCCCCCCT-TGCGTACTGTCAAT
* * * ***
19088807 CCCGCTACCACAACCCTCGATC-CG-ACTGGGGC
128 CCCGCTACCACAACCCTTGGTCTGGTA-T-GATT
* * *
19088839 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
1 TTAGACATGGAATGAACTCCGTATGCATAAGCTAACCCACGAAAC
19088884 GGGTGTGCGG
Statistics
Matches: 163, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.01
158 12 0.07
159 147 0.90
160 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCATAAGCTAACCCACGAAACAAGCGTACGGGCACTCAGCC
GATAGAAGAGGCAGAATGCGCAAGCCAAGAATCGACCCGATCCCCCCTTGCGTACTGTCAATCCC
GCTACCACAACCCTTGGTCTGGTATGATT
Found at i:19089962 original size:26 final size:26
Alignment explanation
Indices: 19089924--19089976 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19089914 CTGATCTGAT
19089924 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19089950 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19089976 C
1 C
19089977 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19090303 original size:26 final size:26
Alignment explanation
Indices: 19090267--19090319 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19090257 CCGGTTTGAT
19090267 CTTAGACT-GGGATCGAACTCTGTATG
1 CTTAGACTGGGGAT-GAACTCTGTATG
*
19090293 CTTAGGCTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
19090319 C
1 C
19090320 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:19096318 original size:26 final size:26
Alignment explanation
Indices: 19096267--19096319 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19096257 CCGGTCCGAT
* *
19096267 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19096293 CTTAGACTGGCGAA-GAACTTCATATG
1 CTTAGACTGG-GAATGAACTCCATATG
19096319 C
1 C
19096320 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19096679 original size:26 final size:26
Alignment explanation
Indices: 19096641--19096692 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19096631 TCGGTACGAT
*
19096641 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19096667 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
19096693 ACTAAGCCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19097178 original size:26 final size:26
Alignment explanation
Indices: 19097142--19097197 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19097132 CCGATCCGAT
*
19097142 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
19097168 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19097194 CTTA
1 CTTA
19097198 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19098393 original size:158 final size:156
Alignment explanation
Indices: 19097902--19098386 Score: 496
Period size: 158 Copynumber: 3.1 Consensus size: 156
19097892 GCTTAAACAA
* * * * *
19097902 GGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAACCGACCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGAAG
* * * * * *
19097967 AGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTATGTGCTGTTGATCCTGCTGC-TGC
66 AGGTAGAATGCGCAAGCCGGGGATC-GGCCAGTCCCTCCTACGTGCTATCGATCCTGCTGCAT--
*
19098031 AACCCTCGGTTCGATCTGATCTTAGACTG
128 AACCCTCGGTCCGATCTGATCTTAGACTG
* * * * *
19098060 GGAATGAACTCCGTATGCATAAGTCAACCAACGAAATAAGCGTGC-GGCGCTGAGCCGACTGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGAAG
* * * * * * **
19098124 AGGCATAATGCGCAAGTCGGGGATCGGTCTGATCCCTCTCTACGTGCTA-CTGGTCCCACTGCCA
66 AGGTAGAATGCGCAAGCCGGGGATCGGCCAG-TCCCTC-CTACGTGCTATC-GATCCTGCTG-CA
* * **
19098188 CAACCCTCGGTCTGA-CTGGGGCTTAGACAT-
127 TAACCCTCGGTCCGATCT-GATCTTAGAC-TG
* * * * *
19098218 GGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAATG-GACGTGCGGGCACTCAGCCGACCAAA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAG-CGTGCGGGCGCTCAGCCGACCGAA
*
19098282 GAGGTAGAATGCGCAAGCCGGGGATTCGGCCAGTCCCTCCTACATGCTATCGATCCTGCTGTCAT
65 GAGGTAGAATGCGCAAGCCGGGGA-TCGGCCAGTCCCTCCTACGTGCTATCGATCCTGCTG-CAT
*
19098347 AACCCTCGGTCCAATCTGATCTTAGACTG
128 AACCCTCGGTCCGATCTGATCTTAGACTG
19098376 GGAATGAACTC
1 GGAATGAACTC
19098387 GATATGCTTA
Statistics
Matches: 260, Mismatches: 54, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 46 0.18
158 159 0.61
159 46 0.18
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGAAG
AGGTAGAATGCGCAAGCCGGGGATCGGCCAGTCCCTCCTACGTGCTATCGATCCTGCTGCATAAC
CCTCGGTCCGATCTGATCTTAGACTG
Found at i:19098750 original size:26 final size:26
Alignment explanation
Indices: 19098721--19098771 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19098711 CGGTCTGATC
19098721 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
19098747 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
19098772 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:19098769 original size:353 final size:360
Alignment explanation
Indices: 19098182--19099179 Score: 1049
Period size: 353 Copynumber: 2.7 Consensus size: 360
19098172 ACTGGTCCCA
* *
19098182 CTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC-ATGCCTAAGCCAACC
* ** **
19098247 CACGAAATG-GACGTGCGGGCACTCAGCCGACCAAAGAGGTAGAATGCGCAAGCCGGGGATTCG-
65 CACGAAATGAG-CGTGCGGGCACTCAGCCG-GCGGAGAGGTAGAATGCGCAAGCAAGGGA-TCGA
* * * * * ** *
19098310 GCCAGTCCCTCCTACATGCTATCGATCCTGCTGTC-ATAACCCTCGGTCCAATCTGATCTTAGAC
127 CCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCGGCAACCCTCGGTCCGATCTGATCTTAGAC
19098374 TGGGAATGAACT-CGATATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
192 TGGGAATGAACTCCG-TATGCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
*
19098438 CGAGCGTGCGGACGCTCAG-CCGACTGGAGAGGCCGACCGAAGAGGCATAATGCACAAGCCAGGG
255 CGAGCGTGCGGACGCTCAGTCCGACT-GAAAGGCCGACCGAAGAGGCATAATGCACAAGCCAGGG
*
19098502 ATCAACCTGGTACCC-CTCTGCGTGCT-AT-CGA-T-CCGG-T
319 ATCAACCCGGT-CCCACTCTGCGTGCTCATCCGATTGCCGGCT
19098539 -TGCCA-ATACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT-CCATGCCTAAGCCAACC
1 CTGCCACA-ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCATGCCTAAGCCAACC
* * * *
19098601 CACGAAATGAGTGTGCGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAGCAAGCGATCGACC
65 CACGAAATGAGCGTGCGGGCACTCAGCCGG-CGGAGAGGTAGAATGCGCAAGCAAGGGATCGACC
* *
19098666 CGGTCCCCCCTGCGTGCT-TCGATCCTGCT-TCGGCAACCCTCGATCCGGTCTGATCTTAGACTG
129 CGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCGGCAACCCTCGGTCCGATCTGATCTTAGACTG
*
19098729 GGAATGAACTCCGTATGTTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
194 GGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * * * ** ** *
19098794 GCGTGCGGTCGCTCAGTCGGCCTGAAAGGTCGGTCGAAGAGGCATAATGGGCAAGTCAGGGATCA
258 GCGTGCGGACGCTCAGTCCGACTGAAAGGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCA
* * *
19098859 GCCCGGTCCCACTCTGTGTGCTACCGATCCGATTGTCGGTCCT
323 ACCCGGTCCCACTCTGCGTGCT--C-ATCCGATTGCCGG--CT
* * *
19098902 GCTGCCACAAACCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCCCATGCCGAAGCCAAC
1 -CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAAC-TCCCATGCCTAAGCCAAC
* * *** * * **
19098967 CCAGGAAATGAGCGTGTGGGTGTTCAGCCGGCAGGAAAGGTAGAATTCGCAAGTTAGGGATC-AG
64 CCACGAAATGAGCGTGCGGGCACTCAGCCGGC-GGAGAGGTAGAATGCGCAAGCAAGGGATCGA-
* * * *
19099031 CCCGATCCCTCTCTGCGTGCTGTCGGTCCTGCTGCTGGTCCTGCAGTCGTAACCCTCGGTCCGAT
127 CCCGGTCCC-CCCTGCGTGCTATCGAT-C--CTGCT-GT-C-G--G-C--AACCCTCGGTCCGAT
* * * * *
19099096 CAGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCC
180 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTC
* *
19099161 AACCCACGAGACGAGCGTG
244 AACCCATGAAACGAGCGTG
19099180 TGGGAGCTCA
Statistics
Matches: 535, Mismatches: 65, Indels: 58
0.81 0.10 0.09
Matches are distributed among these distances:
352 6 0.01
353 164 0.31
354 83 0.16
355 4 0.01
356 41 0.08
357 2 0.00
358 3 0.01
359 1 0.00
360 3 0.01
363 1 0.00
365 40 0.07
366 4 0.01
367 70 0.13
368 10 0.02
369 4 0.01
370 1 0.00
372 5 0.01
374 1 0.00
375 1 0.00
376 1 0.00
378 1 0.00
379 1 0.00
381 87 0.16
382 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (360 bp):
CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCATGCCTAAGCCAACCC
ACGAAATGAGCGTGCGGGCACTCAGCCGGCGGAGAGGTAGAATGCGCAAGCAAGGGATCGACCCG
GTCCCCCCTGCGTGCTATCGATCCTGCTGTCGGCAACCCTCGGTCCGATCTGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
TGCGGACGCTCAGTCCGACTGAAAGGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCAACC
CGGTCCCACTCTGCGTGCTCATCCGATTGCCGGCT
Found at i:19099130 original size:26 final size:26
Alignment explanation
Indices: 19099101--19099153 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19099091 CCGATCAGAT
*
19099101 CTTAGA-ATGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
19099127 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
19099153 C
1 C
19099154 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:19099665 original size:26 final size:26
Alignment explanation
Indices: 19099627--19099679 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19099617 CCGATCCAAT
19099627 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
19099653 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
19099679 C
1 C
19099680 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:19099827 original size:526 final size:527
Alignment explanation
Indices: 19098908--19099855 Score: 1201
Period size: 526 Copynumber: 1.8 Consensus size: 527
19098898 TCCTGCTGCC
** * * *
19098908 ACAAACCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCCCATGCCGAAGCCAACCCAGGA
1 ACAAACCTCGGTCCGGCCAGGGCTTAGACATGGAATAAACTTCCCATGCCGAAGCCAACCAACGA
* * * * * * *
19098973 AATGAGCGTGTGGGTGTTCAGCCGGCAGGAAAGGTAGAATTCGCAAGTTAGGGATCAGCCCGATC
66 AACGAGCGTGTGGGGGCTCAGCCAGCAGGAAAGGCAGAATGCACAAGTTAGGGATCAGCCCGATC
* * * * * * * * *
19099038 CCTCTCTGCGTGCTGTCGGTCCTGCTGCTGGTCCTGCAGTCGTAACCCTCGGTCCGATCAGATCT
131 CCCCCCAGCGTGCTGTCGATCCTGCTGCTGGTCATGCACTCGCAAACCTCGATCCGATCAGATCT
*
19099103 TAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
196 TAGAATGGGAATGAACTCCCTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
* ** * *
19099168 GAGACGAGCGTGTGGGAGCTCAACCGGCTAGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGA
261 GAAACGAGCGTACGGGAGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACCGACTCGA
***
19099233 TCCCCCGTACATGCTGTCGATCCTGCTACCACAACCCTCGCTCTGGTCTGATCTTAGAATGGGAA
326 TCCCCCGTACATGCTGTCGATCCTGCTACCACAACCCTCGCTCTGGTCTGATCTTAGAACAAGAA
19099298 TGAACTCCATATGCCTAAGTCAACCCA-TAAAACGAGTGTACGGGTGCTCGACCGACCGAAAAGG
391 TGAACTCCATATGCCTAAGTCAACCCACTAAAACGAGTGTACGGGTGCTCGACCGACCGAAAAGG
19099362 CATAATGCACAAGCCGAGGATCAGCCTGGTCACCCTCTACGTGCTGCTGATCTCGCTGTCGATTC
456 CATAATGCACAAGCCGAGGATCAGCCTGGTCACCCTCTACGTGCTGCTGATCTCGCTGTCGATTC
19099427 TGCTATG
521 TGCTATG
* * * *
19099434 ACAACCCTCGGTCTGGCCAGGGCTTAGACATGGAATAAAC-TCCGTATGCCTAAGCCAACCAACG
1 ACAAACCTCGGTCCGGCCAGGGCTTAGACATGGAATAAACTTCC-CATGCCGAAGCCAACCAACG
* * * * *
19099498 AAACGAGCGTGTGGGGGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGTTGGGGAT-TGACCCGG
65 AAACGAGCGTGTGGGGGCTCAGCCAGCAGGAAAGGCAGAATGCACAAGTTAGGGATCAG-CCCGA
*
19099562 TCCCCCCCAGCGTGCTG-CTGATCCTGCTGCTGGTCATGCTACT-GCAAACCTTGATCCGATCCA
129 TCCCCCCCAGCGTGCTGTC-GATCCTGCTGCTGGTCATGC-ACTCGCAAACCTCGATCCGAT-CA
* * *
19099625 -ATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAA
191 GATCTTAGAATGGGAATGAACTCCCTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
** * * * * * * **
19099689 CTGATGAAATGAGCGTACGGGTGCTCAACTGGCCGGAGAGGCAGAATGCGCAAGTTGGGGACCGA
256 CCCACGAAACGAGCGTACGGGAGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACCGA
* * **** * *
19099754 C-CTGTTCCCTCC-TGCATGCTGTCGATCCTGCTGTTGCAACCCTCGGTCTGGTTTGATCTTAGA
321 CTC-GATCCC-CCGTACATGCTGTCGATCCTGCTACCACAACCCTCGCTCTGGTCTGATCTTAGA
* **
19099817 CCAAGAATGAACTCTGTATGCCTAAGTCAACCCACTAAA
384 ACAAGAATGAACTCCATATGCCTAAGTCAACCCACTAAA
19099856 TGAGCGTGCG
Statistics
Matches: 350, Mismatches: 64, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
525 6 0.02
526 334 0.95
527 10 0.03
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (527 bp):
ACAAACCTCGGTCCGGCCAGGGCTTAGACATGGAATAAACTTCCCATGCCGAAGCCAACCAACGA
AACGAGCGTGTGGGGGCTCAGCCAGCAGGAAAGGCAGAATGCACAAGTTAGGGATCAGCCCGATC
CCCCCCAGCGTGCTGTCGATCCTGCTGCTGGTCATGCACTCGCAAACCTCGATCCGATCAGATCT
TAGAATGGGAATGAACTCCCTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGAGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACCGACTCGA
TCCCCCGTACATGCTGTCGATCCTGCTACCACAACCCTCGCTCTGGTCTGATCTTAGAACAAGAA
TGAACTCCATATGCCTAAGTCAACCCACTAAAACGAGTGTACGGGTGCTCGACCGACCGAAAAGG
CATAATGCACAAGCCGAGGATCAGCCTGGTCACCCTCTACGTGCTGCTGATCTCGCTGTCGATTC
TGCTATG
Found at i:19100492 original size:26 final size:26
Alignment explanation
Indices: 19100463--19100541 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
19100453 CCGGTCCGAT
19100463 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19100489 CTTAGACTAGGG-TTGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
19100515 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19100541 C
1 C
19100542 CTAAGTCGAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.06
26 43 0.88
27 3 0.06
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19100848 original size:26 final size:26
Alignment explanation
Indices: 19100819--19100871 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19100809 CCGGTCTGAT
* *
19100819 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19100845 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19100871 C
1 C
19100872 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19101210 original size:159 final size:159
Alignment explanation
Indices: 19100844--19101607 Score: 479
Period size: 159 Copynumber: 4.8 Consensus size: 159
19100834 AACTCTGTAT
* * * * * * *
19100844 GCTTAGACTGGGGATAAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACTAGGAATGAACTCCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTGA
* * * * * * *
19100908 GTCGGCC-AGAGAGGCATAATGCGAAAG-CTGGGGACTAGCTCGGT-CCCCT-TACGTGCTGTCG
66 GCCGGCCGA-AGTGGCATAATGCGCAAGTC-GGGGA-TGGCCCGATCCCCCTCTACGTGCTATCG
** * ** * * * * *
19100969 ATCTTGCTACTGCAACCGTC-GTC-TGATCCGA
128 ATCCCGCTGCCACAACCCTCGGTCAGGCT-GGG
* * * *
19101000 TCTTAGACTGGGAATGAACT-GCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGAGCTGA
1 GCTTAGACTAGGAATGAACTCCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTGA
* * * *
19101064 GCCGGCCGAAGTGGCATAACGGGCAAGTCGGGGATGGGCCCGATCCCCCTCTACGAGCTACCGAT
66 GCCGGCCGAAGTGGCATAATGCGCAAGTCGGGGAT-GGCCCGATCCCCCTCTACGTGCTATCGAT
* *
19101129 CCCG-TAGCCACAACACTTGGTCAGGCTGGG
130 CCCGCT-GCCACAACCCTCGGTCAGGCTGGG
* * * * * * *
19101159 GCTTAGAC-ATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTC
1 GCTTAGACTA-GGAATGAACTCCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTG
* * * * * * * *
19101222 AGTCGGCCGGAGAGGCAGAATGCACAAGTCGAGTACTGACCCGATCCCACC-CTACGTGCTATCG
65 AGCCGGCCGAAGTGGCATAATGCGCAAGTCGGGGA-TGGCCCGATCCC-CCTCTACGTGCTATCG
* * * * *
19101286 ATCCTGCTGCCGCAACCCTCGATCCGGTCT-GA
128 ATCCCGCTGCCACAACCCTCGGTCAGG-CTGGG
* * * * * *
19101318 TCTTAGACTAGGAGTGAACT-CCGTATGCCTAAGTCAACCCATGAAATGAGTGTTCAGGCA-CTG
1 GCTTAGACTAGGAATGAACTCCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGG-AGCTG
** * * * * * **
19101381 AGCTAGCCGAAAGTCGCATAATGCGCAAG-CTGGGGATCGGCTCGGTCTCCCTCTGCGTGCCGTC
65 AGCCGGCCG-AAGTGGCATAATGCGCAAGTC-GGGGAT-GGCCCGATCCCCCTCTACGTGCTATC
* * *
19101445 GATCCCGCTGCCATAACCCTCGGTCTGGCTGAG
127 GATCCCGCTGCCACAACCCTCGGTCAGGCTGGG
* * * *
19101478 GCTTAGAC-ATGGAATGAACTCCCG-ATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTC
1 GCTTAGACTA-GGAATGAACTCCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTG
* * * * * * * *
19101541 CGCCGGTCGGAGAGGCAGAATGCGCAAG-CTAGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCG
65 AGCCGGCCGAAGTGGCATAATGCGCAAGTC-GGGGAT-GGCCCGATCCCCCTCTACGTGCTATCG
19101604 ATCC
128 ATCC
19101608 TATTGTCGCA
Statistics
Matches: 468, Mismatches: 117, Indels: 44
0.74 0.19 0.07
Matches are distributed among these distances:
155 1 0.00
156 87 0.19
157 8 0.02
158 34 0.07
159 219 0.47
160 116 0.25
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACTAGGAATGAACTCCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTGA
GCCGGCCGAAGTGGCATAATGCGCAAGTCGGGGATGGCCCGATCCCCCTCTACGTGCTATCGATC
CCGCTGCCACAACCCTCGGTCAGGCTGGG
Found at i:19101508 original size:319 final size:316
Alignment explanation
Indices: 19100860--19101662 Score: 897
Period size: 319 Copynumber: 2.5 Consensus size: 316
19100850 ACTGGGGATA
* * * *
19100860 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGAGGCAT
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAG
* * * * * * *
19100925 AATGCGA-AAGCTGGGGACT-AGCTCGGT-CCCCTTACGTGCTGTCGATCTTGCTACTGCAACCG
66 AATGC-ACAAGC-GAGGACTGA-CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCC
* * *
19100987 TCG-TCTGATCCGATCTTAGACTGGGAATGAACTGCGTATGCCTAAGTCAACCCATGAAACGAGC
128 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * *
19101051 GTGCAGGAGCTGAGCCGGCCGAAGTGGCATAACGGGCAAGTCGGGGATGGGCCCGATCCCCCTCT
193 GTGCAGGAGCTGAGCCAGCCGAAGTCGCATAACGCGCAAGTCGGGGATCGGCCCGATCCCCCTCT
* * *
19101116 ACGAGCTACCGATCCCGTAGCCACAACACTTGGTCAGGCTGGGGCTTAGACATGGAATG
258 ACGAGCCACCGATCCCGTAGCCACAACACTCGGTCAGGCTGAGGCTTAGACATGGAATG
* * *
19101175 AACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGGCCGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAG
* * *
19101240 AATGCACAAGTCGAGTACTGACCCGATCCCACCCTACGTGCTATCGATCCTGCTGCCGCAACCCT
66 AATGCACAAG-CGAGGACTGACCCGGTCCC-CCCTACGTGCTGTCGATCCTGCTGCCGCAACCCT
* * * * *
19101305 CGATCCGGTCTGATCTTAGACTAGGAGTGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTG
129 CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
* * * * * *
19101370 TTCAGGCA-CTGAGCTAGCCGAAAGTCGCATAATGCGCAAG-CTGGGGATCGGCTCGGTCTCCCT
194 TGCAGG-AGCTGAGCCAGCCG-AAGTCGCATAACGCGCAAGTC-GGGGATCGGCCCGATCCCCCT
* * ** * * *
19101433 CTGCGTGCCGTCGATCCCGCT-GCCATAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATG
256 CTACGAGCCACCGATCCCG-TAGCCACAACACTCGGTCAGGCTGAGGCTTAGACATGGAATG
* * * * * *
19101494 AACTCCCG-ATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCCGCCGGTCGGAGAGGCA
1 AACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCA
* * * ** *
19101558 GAATGCGCAAGCTAGGGA-TCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTATTGTCGCAA-CC
65 GAATGCACAAGCGA-GGACT-GACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCC
* *
19101621 TCGATCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGC
128 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
19101663 TTAGACTGGG
Statistics
Matches: 407, Mismatches: 68, Indels: 24
0.82 0.14 0.05
Matches are distributed among these distances:
314 1 0.00
315 75 0.18
316 4 0.01
317 69 0.17
318 99 0.24
319 156 0.38
320 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (316 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAG
AATGCACAAGCGAGGACTGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCG
ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
CAGGAGCTGAGCCAGCCGAAGTCGCATAACGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACG
AGCCACCGATCCCGTAGCCACAACACTCGGTCAGGCTGAGGCTTAGACATGGAATG
Found at i:19101665 original size:26 final size:26
Alignment explanation
Indices: 19101636--19101688 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19101626 CCGGTCCAAT
*
19101636 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGCATG
* *
19101662 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
19101688 C
1 C
19101689 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:19102148 original size:367 final size:354
Alignment explanation
Indices: 19101480--19102158 Score: 835
Period size: 367 Copynumber: 1.9 Consensus size: 354
19101470 TGGCTGAGGC
* * * * **
19101480 TTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCCGCC
1 TTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAACC
* * * *
19101545 GGTCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTA
66 GATCGAAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTA
* * *
19101610 TTGTCGCAACCTCGATCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGA
131 TTGCCGCAACCTCGATCCGGTCCAATCTTAGACTGGGAATAAACTCCGCATGCTTAGACTGGGAA
* ** * * *
19101675 TGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGCACGGGCGCTCAACCTGCCGGAGAGGC
196 TGAACTCCGCATGCCTAAGCCAACCCACGAAACAAGCGCACAGGCACTCAACCAGCCGGAGAGGC
* * * * * * *
19101740 ATAATACGCAAGCCGGGGATCAGCTCGGTCCCTCTTTGCGTGCTGTCGATCCCACTGCCGGTCTT
261 AGAATACGCAAGACGGGGATCAGCCCGATCCCCCCTTGCGTGCTATCGATCCCACTGCCGGTCTT
19101805 GCTGCCACAACCCTTGGTCCGATTGGGGA
326 GCTGCCACAACCCTTGGTCCGATTGGGGA
* *
19101834 TTAGACATGGAATGAACT-CCGTATGCCTAAGCTAACCCACGACACGAGCGTGCGAGCGCTCAAC
1 TTAGACATGGAATGAACTCCCG-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAAC
*
19101898 CGATCGAAGAGGCA-AATGCGCAAGC-CGGAGATCGGCCCGATCCCCCCTACATGCTGTCGATCC
65 CGATCGAAGAGGCAGAATGCGCAAGCTAGG-GATCGGCCCGATCCCCCCTACATGCTGTCGA---
* * *
19101961 TGCCGCTAGTCCTACTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAATGAACTCTGC
126 T--C-CTA----T--TGCCGCAA-CCTCGATCCGGTCCAATCTTAGACTGGG-AATAAACTCCGC
* * *
19102026 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACAGGCACT
180 ATGCTTAGAC-TGGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACAAGCGCACAGGCACT
* * *
19102090 CAACCAGCTGGAGAGGCAGAATGCGCAAGACGGGGTTCAGCCCGATCCCCCCTTGCGTGCTATCG
244 CAACCAGCCGGAGAGGCAGAATACGCAAGACGGGGATCAGCCCGATCCCCCCTTGCGTGCTATCG
19102155 ATCC
309 ATCC
19102159 TGCTACCGTA
Statistics
Matches: 270, Mismatches: 38, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
352 2 0.01
353 43 0.16
354 64 0.24
356 1 0.00
358 1 0.00
359 3 0.01
363 1 0.00
365 7 0.03
366 27 0.10
367 120 0.44
368 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (354 bp):
TTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAACC
GATCGAAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTA
TTGCCGCAACCTCGATCCGGTCCAATCTTAGACTGGGAATAAACTCCGCATGCTTAGACTGGGAA
TGAACTCCGCATGCCTAAGCCAACCCACGAAACAAGCGCACAGGCACTCAACCAGCCGGAGAGGC
AGAATACGCAAGACGGGGATCAGCCCGATCCCCCCTTGCGTGCTATCGATCCCACTGCCGGTCTT
GCTGCCACAACCCTTGGTCCGATTGGGGA
Found at i:19102331 original size:159 final size:158
Alignment explanation
Indices: 19102029--19102531 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 158
19102019 ACTCTGCATG
* ** * **
19102029 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACAGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAAC
* * * * *
19102094 CAGCTGGAGAGGCAGAATGCGCAAGACGGGGTTCAGCCCGATCCCCCCTTGCGTGCTATCGATCC
66 CAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCC-TGCGTGCTATCGATCC
* **
19102159 TGCTACCGTAACCCTCGGTCCAGTCTGAT
130 TGCTGCCACAACCCTCGGTCCAGTCTGAT
* *
19102188 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTCCGGGTGCT-AA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAA
** * * * * * *
19102251 GCTGGCCGGAGAGGCATAATGCGCAACCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGT
65 -CCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGAT
** * * **
19102316 CCCACTGCCACAACCCTCGGT-CTGGCTGGGG
128 CCTGCTGCCACAACCCTCGGTCCAGTCT-GAT
* * *
19102347 CTTAGACATGGAATGAATTTCC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAA
1 CTTAGACATGGAATGAA-CTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAA
** * * * * * *
19102411 CCAATCAGAGAGGCAAAAAGCGCAAGCCGGGGATCGACCCGTTCCTCCCTGCGTGCTATCGATCT
65 CCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
* *
19102476 TGCTGCCACAATCCTCGGTCCAATCCT-AT
130 TGCTGCCACAACCCTCGGTCCAGT-CTGAT
*
19102505 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
19102532 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 57, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.01
158 57 0.21
159 206 0.75
160 9 0.03
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAAC
CAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCT
GCTGCCACAACCCTCGGTCCAGTCTGAT
Found at i:19102534 original size:26 final size:26
Alignment explanation
Indices: 19102505--19102557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19102495 CCAATCCTAT
19102505 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19102531 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19102557 C
1 C
19102558 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19103263 original size:26 final size:26
Alignment explanation
Indices: 19103225--19103277 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19103215 GGCTCAAAAT
*
19103225 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19103251 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19103277 C
1 C
19103278 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19103544 original size:158 final size:154
Alignment explanation
Indices: 19103251--19103751 Score: 522
Period size: 158 Copynumber: 3.2 Consensus size: 154
19103241 ACTCTGTATG
* * *
19103251 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAACGTGCGGGTGCTCAGC
* * * *
19103316 CGACTAGAGAGGCAGAATGCGCAAGTCGGGTATCAGCCCGGTCCCCCCTACGTGCTATCGATCCT
65 CGACGA-AGAGGCATAATGCGCAAG-CGGG-ATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
* * *
19103381 ACTGCCACAACCCTCCGTCTGGTTGGAT
127 ACTGCCACAACCCTCAGTCCGGATGGAT
* * *
19103409 CTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAACGTGCGGGTGCTCAG
* * * *
19103473 CCAGCCGAAGAGGCATAATGCGCAAGACAGGGATCGGCTCGATCCCCCTCTACGTGCTGTCGGTC
64 CC-GACGAAGAGGCATAATGCGCAAG-C-GGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATC
* * * * **
19103538 C-GCTGCCACAACCCTCGGTCCAGCTGGGG
125 CTACTGCCACAACCCTCAGTCCGGATGGAT
* * **
19103567 CTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCACAAAATGGACGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAACGTGCGGGTGCTCAGC
* * * *
19103632 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
65 C-GACGAAGAGGCATAATGCGCAAGC--GGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
* ** **
19103697 ATTGCTGCAACCCTCAGTCCGGACCGAT
127 ACTGCCACAACCCTCAGTCCGGATGGAT
19103725 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
19103752 TTAGATTTGG
Statistics
Matches: 284, Mismatches: 50, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
157 18 0.06
158 244 0.86
159 22 0.08
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAACGTGCGGGTGCTCAGCC
GACGAAGAGGCATAATGCGCAAGCGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTG
CCACAACCCTCAGTCCGGATGGAT
Found at i:19104143 original size:26 final size:26
Alignment explanation
Indices: 19104105--19104160 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
19104095 CCGGTCTGAT
19104105 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19104131 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19104157 CTTA
1 CTTA
19104161 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19104305 original size:367 final size:364
Alignment explanation
Indices: 19103409--19104897 Score: 1244
Period size: 368 Copynumber: 4.1 Consensus size: 364
19103399 CTGGTTGGAT
* * * *
19103409 CTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGTGCT-C-
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTACT
* * *
19103471 AGCC-AG-CCGAAGAGGCATAATGCGCAAGACAGGGATCGGCTC-GATCCCCCTCT--A-----C
65 AGCCAAGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGC-CAG-TCCCCCTCTGCATGCTGC
* * * *
19103526 G-T---GCTGTCGGTCC-GCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACT
128 GATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACT
* * * * * *
19103586 CCGTATGCCTAAGCGAACCCACAAAATG-GACGTGCGG-GCACTCAGCCGGTCGGAGAGGCATAA
193 CCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGTG--CTCAACCCGTCGGAGAGGCAGAA
* * * * * *
19103649 TGCGCAAGCTGGGGATCGGCCCGGTCCC-CC-----CTGC-GTGCTGC-C-GATCCTATTG-CTG
255 TGCGTAAGC-AGGGATTGGCCCGGTCCCTCCTTGTGCTGCTATCCTGCTCTGGTCCTATTGTC-G
* * *
19103704 CAACCCTC-AGTCCGGACCGATCTTAGACTGGGAATGAACTCCGTATG
318 CAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
** * * ** * * * * *
19103751 CTTAGATTTGGGATGAGCTTTGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAGGCGTTCATC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGG-GTGC-TA
* *
19103816 CGGTCGAAGAGGCC--GACCGGAGAGGCATAATGTGCAAGCCTGGGATCAGCCCAGTCCCCCTCT
63 C--T-----A-GCCAAGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAG-CCAGTCCCCCTCT
* **
19103879 GCATGCTACCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCTAGCTAGGGCTTAGACAT
119 GCATGCT-GCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACAT
* *
19103944 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGTGCTCAACCCGTCGAAG
183 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GTGCTCAACCCGTCGGAG
*
19104009 AGGCAGAATGCATAAGTCAGGGATTGGCCCGGTCCCTCCTGTGTGCTGCCTATCCTGCTGCTGGT
247 AGGCAGAATGCGTAAG-CAGGGATTGGCCCGGTCCCTCCT-TGTGCTG-CTATCCTGCT-CTGGT
* *
19104074 CCTATTGTCGCAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
308 CCTATTGTCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
19104131 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGTGTGCGGGTGCT-C-A
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTACTA
* * * * *
19104194 GCC-A-ACCGAAGATGCATAATGCGTAAGCCGGGGATCAGTCCGGTCCCCCTCTGCATGCTGTCG
66 GCCAAGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAG-CCAGTCCCCCTCTGCATGCTG-CG
* * *
19104257 ATCCCGCTGCCAGTCCTGCTGCAACAA-CCTCCAGTCCGGCTAGGGCTTAGACATGCAATGAACT
129 ATCCCGCTGCCAGTCCTGCTGCCACAACCCT-CGGTCCGGCTAGGGCTTAGACATGGAATGAACT
* * * * **
19104321 CCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGACGCTC-AGTCGATCGGAGAGGCAGAAT
193 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-TGCTCAACCCG-TCGGAGAGGCAGAAT
* * *
19104385 GCGTAAGCCGGGGATCT-GCCCGATCCCT-CTTGTG-TG-----CTG-T-TGATCCTATTGTCGC
256 GCGTAAG-CAGGGAT-TGGCCCGGTCCCTCCTTGTGCTGCTATCCTGCTCTGGTCCTATTGTCGC
* * *
19104440 AGCCCTCGATCTGGACTGATCTTAGACTGGGAATGAACTCTGTATG
319 AACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19104486 CTTAGA-TTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCT-A-
* * * *
19104550 CTAGCCAGAGAGGCCAGTCGGAGAGGTATAATGCACAAGCCAGAGATCAGCCTAGTCCCTCTCTG
63 CTAGCCA-AGA---C---CGGAGAGGCATAATGCGCAAGCCAGGGATCAGCC-AGTCCCCCTCTG
* * *
19104615 CATGCTGCTGATCCCGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATG
120 CATGCTGC-GATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATG
* * * * *
19104680 GAATGAACTCCGTACGCCTAAGCCAACCCCCGAAACGAGTGTGCGGGTGCTCAACCGGCCGGAGA
184 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGTGCTCAACCCGTCGGAGA
* * * * *
19104745 GGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCCTCCCTATGTGCTGCTGATCCTGCTACTGGT
248 GGCAGAATGCGTAAGCAG-GGATTGGCCCGGTCCCT-CCT-TGTGCTGCT-ATCCTGCT-CTGGT
* ** ** * *
19104810 CCTACTACCATAACCCTCGATCTGGTCTGATCTTAGACTGAGAGTGAACTCCGTATG
308 CCTATTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
19104867 CTTAGACATGGAATGAACTCCGTATGCCTAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAA
19104898 CCCTCGATTC
Statistics
Matches: 922, Mismatches: 136, Indels: 139
0.77 0.11 0.12
Matches are distributed among these distances:
342 44 0.05
343 3 0.00
344 3 0.00
345 1 0.00
346 1 0.00
354 3 0.00
355 144 0.16
356 3 0.00
357 2 0.00
358 4 0.00
359 4 0.00
361 1 0.00
362 1 0.00
363 2 0.00
364 3 0.00
365 5 0.01
366 9 0.01
367 194 0.21
368 280 0.30
369 12 0.01
370 3 0.00
371 4 0.00
372 2 0.00
375 3 0.00
376 2 0.00
377 6 0.01
378 6 0.01
379 4 0.00
380 95 0.10
381 77 0.08
382 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (364 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTACTA
GCCAAGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCAGTCCCCCTCTGCATGCTGCGAT
CCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCG
TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTGCTCAACCCGTCGGAGAGGCAGAATGCGTA
AGCAGGGATTGGCCCGGTCCCTCCTTGTGCTGCTATCCTGCTCTGGTCCTATTGTCGCAACCCTC
GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19104489 original size:26 final size:26
Alignment explanation
Indices: 19104460--19104512 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19104450 CTGGACTGAT
19104460 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
19104486 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19104512 C
1 C
19104513 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19104702 original size:368 final size:360
Alignment explanation
Indices: 19103535--19104800 Score: 1272
Period size: 368 Copynumber: 3.5 Consensus size: 360
19103525 CGTGCTGTCG
*
19103535 GTCC-GCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
19103599 CGAACCCACAAAATG-GACGTGCGGGCACTCAGCCGGTCGGAGAGGCATAATGCGCAAGCTGGGG
66 CCAACCCACGAAACGAG-CGTGCGGACGCTCAGCC-GTCGGAGAGGCAGAATGCGTAAGCCGGGG
* * * * ** *
19103663 ATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTATTG-CTGCAACCCTCAGTCCGGACCGATCT
129 ATCTGCCCGGTCCCTCTTGTGTGCTGTTGATCCTATTGTC-GCAACCCTCAGTCCGGACTGATCT
* *
19103727 TAGACTGGGAATGAACTCCGTATGCTTAGATTTGGGATGAGCTTTGTATGCCTAAGTCAACCCAC
193 TAGACTGGGAATGAACTCCGTATGCTTAGA-TTGGGATGAACTTCGTATGCCTAAGTCAACCCAC
* * * * *
19103792 AAAACGAGCGTGTAGGCGTTCATC-CGGTCGAAGAGGCCGACCGGAGAGGCATAATGTGCAAGCC
257 GAAACGAGCGTGT-GG-GTGC-TCACAGCCG-AGAGGCCG--CGGAGAGGCATAATGCGCAAGCC
* * *
19103856 TGGGATCAGCCCAGTCCCCCTCTGCATGCTACCGATCCCGCTGCCA
316 AGGGATCAG-CCAGTCCCCCTCTGCATGCTGCTGATCCCGCTGCCA
* *
19103902 GTCCTGCTGCCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * *
19103967 CCAACCCACGAAACGAGCGTGC-GAGTGCTCAACCCGTCGAAGAGGCAGAATGCATAAGTCAGGG
66 CCAACCCACGAAACGAGCGTGCGGA-CGCTC-AGCCGTCGGAGAGGCAGAATGCGTAAGCCGGGG
*
19104031 AT-TGGCCCGGTCCCTCCTGTGTGCTGCCTATCCTGCTGCTGGTCCTATTGTCGCAACCCTCAGT
129 ATCT-GCCCGGTCCCT-CT-TGTG-TG------CTG-T--TGATCCTATTGTCGCAACCCTCAGT
* * * * * *
19104095 CCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCTT
181 CCGGACTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TTGGGATGAACTTCGTATGCCT
* * * * * * *
19104160 AAGCCAACCCATGAAATGAGTGTGCGGGTGCT--CAGCC-A-A---C-CGAAGATGCATAATGCG
245 AAGTCAACCCACGAAACGAGCGTGTGGGTGCTCACAGCCGAGAGGCCGCGGAGAGGCATAATGCG
* * *
19104217 TAAGCCGGGGATCAGTCCGGTCCCCCTCTGCATGCTG-TCGATCCCGCTGCCA
310 CAAGCCAGGGATCAG-CCAGTCCCCCTCTGCATGCTGCT-GATCCCGCTGCCA
* * * *
19104269 GTCCTGCTGCAACAA-CCTCCAGTCCGGCTAGGGCTTAGACATGCAATGAACTCCGTATGCCTAA
1 GTCCTGCTGCCACAACCCT-CGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * *
19104333 GCCAACCCATGAAACGAGCATACGGACGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGG
65 GCCAACCCACGAAACGAGCGTGCGGACGCTCAGCCG-TCGGAGAGGCAGAATGCGTAAGCCGGGG
* * *
19104398 ATCTGCCCGATCCCTCTTGTGTGCTGTTGATCCTATTGTCGCAGCCCTC-GATCTGGACTGATCT
129 ATCTGCCCGGTCCCTCTTGTGTGCTGTTGATCCTATTGTCGCAACCCTCAG-TCCGGACTGATCT
*
19104462 TAGACTGGGAATGAACTCTGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCAC
193 TAGACTGGGAATGAACTCCGTATGCTTAGATT-GGGATGAACTTCGTATGCCTAAGTCAACCCAC
* *
19104527 GAAACGAGCGTGTGGGTGCTCAGCTAGCCAGAGAGGCCAGTCGGAGAGGTATAATGCACAAGCCA
257 GAAACGAGCGTGTGGGTGCTCA-C-AGCC-GAGAGGCC-G-CGGAGAGGCATAATGCGCAAGCCA
* * * *
19104592 GAGATCAGCCTAGTCCCTCTCTGCATGCTGCTGATCCCGCTACCG
317 GGGATCAGCC-AGTCCCCCTCTGCATGCTGCTGATCCCGCTGCCA
* * *
19104637 GTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * ** * * * * *
19104702 CCAACCCCCGAAACGAGTGTGCGGGTGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGA
66 CCAACCCACGAAACGAGCGTGCGGACGCTCAGCC-GTCGGAGAGGCAGAATGCGTAAGCCGGGGA
* * *
19104767 TC-GACCCGGTCCCTCCCTATGTGCTGCTGATCCT
130 TCTG-CCCGGTCCCT-CTTGTGTGCTGTTGATCCT
19104801 GCTACTGGTC
Statistics
Matches: 738, Mismatches: 117, Indels: 86
0.78 0.12 0.09
Matches are distributed among these distances:
354 2 0.00
355 103 0.14
357 1 0.00
358 4 0.01
359 4 0.01
361 1 0.00
362 1 0.00
364 2 0.00
365 5 0.01
366 8 0.01
367 181 0.25
368 284 0.38
369 26 0.04
370 4 0.01
371 2 0.00
373 1 0.00
374 1 0.00
376 3 0.00
377 4 0.01
378 3 0.00
379 2 0.00
380 95 0.13
381 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (360 bp):
GTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGTCGGAGAGGCAGAATGCGTAAGCCGGGGAT
CTGCCCGGTCCCTCTTGTGTGCTGTTGATCCTATTGTCGCAACCCTCAGTCCGGACTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGATTGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGTGGGTGCTCACAGCCGAGAGGCCGCGGAGAGGCATAATGCGCAAGCCAGGGATCAGC
CAGTCCCCCTCTGCATGCTGCTGATCCCGCTGCCA
Found at i:19104883 original size:26 final size:25
Alignment explanation
Indices: 19104841--19104968 Score: 95
Period size: 26 Copynumber: 5.0 Consensus size: 25
19104831 CTGGTCTGAT
*
19104841 CTTAGACTGAGAGTGAACTCCGTATG
1 CTTAGACTG-GAATGAACTCCGTATG
19104867 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
* * * *
19104893 CCTA-ACCCTCGATTCGGA--CCG-AT-
1 CTTAGA--CTGGAAT-GAACTCCGTATG
*
19104916 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
*
19104942 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
19104968 C
1 C
19104969 CTAAGCCAAC
Statistics
Matches: 80, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
22 3 0.04
23 6 0.08
24 6 0.08
25 6 0.08
26 54 0.68
27 5 0.06
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:19104943 original size:75 final size:75
Alignment explanation
Indices: 19104820--19104972 Score: 220
Period size: 75 Copynumber: 2.0 Consensus size: 75
19104810 CCTACTACCA
* * * *
19104820 TAACCCTCGATCTGGTCTGATCTTAGACTGAGAGTGAACTCCGTATGCTTAGACAT-GGAATGAA
1 TAACCCTCGATCTGGACCGATCTTAGAATGAGAATGAACTCCGTATGCTTAGAC-TGGGAATGAA
19104884 CTCCGTATGCC
65 CTCCGTATGCC
* *
19104895 TAACCCTCGAT-TCGGACCGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
1 TAACCCTCGATCT-GGACCGATCTTAGAATGAGAATGAACTCCGTATGCTTAGACTGGGAATGAA
19104959 CTCCGTATGCC
65 CTCCGTATGCC
19104970 TAA
1 TAA
19104973 GCCAACCCAC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
74 2 0.03
75 68 0.97
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (75 bp):
TAACCCTCGATCTGGACCGATCTTAGAATGAGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCC
Found at i:19112014 original size:158 final size:156
Alignment explanation
Indices: 19111554--19112016 Score: 441
Period size: 158 Copynumber: 2.9 Consensus size: 156
19111544 TGAACTCCGT
* * * * *
19111554 ATGCTTAGACATGGAATGAACTCCATATCCCTAAGCCAACCCACAAAACGAGCGTGTGGGCACTC
1 ATGCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
19111619 AGCCGACCGGAGAGGTAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTGCGTGCTGTTGAT
66 AGCCG-CCAGAGAGGTAGAATGCGCAAG-CAGGGATCGACCCGGT-CCCCCTACGTGCTGTCGAT
* * *
19111684 CCTACTACCGCAACCCTCGGCCCAGTCTG
128 CCTGCTGCCGCAACCCTCGACCCAGTCTG
* * * * * *
19111713 AT-CTTAG-ACTGGGAATGAGCTCCTTATG-CAAAGTCAACCCACGAAACAAGCGTGCGGGCGCT
1 ATGCTTAGAAAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * *
19111775 GAGCCGGCCAAAGAGGCATAATGCGCAAGCAGGGGATCGGCCCGGTCCCTCTCTACGTACTGTCG
65 CAGCC-GCCAGAGAGGTAGAATGCGCAAGCA-GGGATCGACCCGGTCCC-C-CTACGTGCTGTCG
* * * * *
19111840 GTCCCGCTGCCACAACCCTCGATCTAG-CT-
126 ATCCTGCTGCCGCAACCCTCGACCCAGTCTG
* * * * * *
19111869 AGTGCTTAGAAATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCT
1 A-TGCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* *
19111934 CAGCCAGCCAGAGTGGTAGAATGCGCAAGCCAGGAATCGACCCGGTCCCCCATACGTGCTGTCGA
65 CAGCC-GCCAGAGAGGTAGAATGCGCAAG-CAGGGATCGACCCGGTCCCCC-TACGTGCTGTCGA
*
19111999 TCCTGCTGTCGCAACCCT
127 TCCTGCTGCCGCAACCCT
19112017 TGGTCTGATC
Statistics
Matches: 240, Mismatches: 53, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 6 0.03
157 68 0.28
158 95 0.40
159 69 0.29
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (156 bp):
ATGCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGCCAGAGAGGTAGAATGCGCAAGCAGGGATCGACCCGGTCCCCCTACGTGCTGTCGATCCT
GCTGCCGCAACCCTCGACCCAGTCTG
Found at i:19112060 original size:26 final size:26
Alignment explanation
Indices: 19112031--19112083 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19112021 CTGATCCGAT
19112031 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
19112057 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
19112083 C
1 C
19112084 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Done.