Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 174 of 402
Found at i:19112583 original size:26 final size:26
Alignment explanation
Indices: 19112554--19112606 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19112544 CTGGTCCGAT
19112554 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19112580 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19112606 C
1 C
19112607 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19112885 original size:513 final size:505
Alignment explanation
Indices: 19111529--19113146 Score: 1521
Period size: 513 Copynumber: 3.2 Consensus size: 505
19111519 GTGGCTCAAA
* * *
19111529 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATCCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19111593 CCCACAAAACGAGCGTGTGGGCA-CTCAGCCGACCGGAGAGGTAGAATGCGCAAG-TCAGGGATC
65 CCCACGAAACGAGCGTGCGGG-AGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCT-AGGGATC
* * * * * * *
19111656 GACCCGATCCCCCC-TGCGTGCTGTTGATCCTACTACCGCAACCCTCGG-CCCAGTCTGATCTTA
128 GACCCGATCCCCCCTTGTGTGCTATTGATCCTGCTGCCACAACCCTCGGTCCGA-TCCGATCTTA
* *
19111719 GACTGGGAATGAGCTCCT-TATG-CAAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCGG
192 GACT-GGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCGG
* * * * *
19111782 CCAAAGAGGCATAATGCGCAAGCAGGGGATCGGCCCGGTCCCTCTCTACGTACTGTCGGTCCCGC
255 TCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CTCTACGTGCTG-CAGTCCCGC
* * * *
19111847 TGCCACAACCCTCGATCTAG-CTAGTGCTTAGAAATTGAATGAACTCCCTATGCCTAAGCCAACC
318 TGCCACAACCCTCAATCTGGTCTAGT-CTTAG-ACTGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * **
19111911 CATGAAATGGGTGTGCGGGCGCTCAGCCAGCCAGAGTGGTAGAATGCGCAAGCCAGGAATCGACC
381 CACGAAACGGGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGTC
* * * *
19111976 CGGTCCCCCATAC-G-TGCTG-T-CGA---TCCTGCTGTCGCAACCCTTGGTCTGATCCG
446 CGGTCCCCCCTACTGCTGCCGATCCTATCGTCCTGCTGTCGCAACCCTCGGTCTGATCCG
* * *
19112029 ATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * * * ** *
19112094 TTACGAAACGAGCGTACGGGTGCTCTGTCGGCCGGA-AGGCATAATACGCAAGCCGGGGATCAAC
66 CCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCTAGGGATCGAC
* ** * *
19112158 CCGATCCCCCTCTGCTGCTGCCGACCCCACTACCGGTCCTGCTGGCACAACCCTCGGTCCGA-CT
131 CCGATCCCCC-CT--TG-TG-TG------CTATTGATCCTGCTGCCACAACCCTCGGTCCGATC-
* ** * * **
19112222 GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-CTGTGCGGGCGC
184 CGATCTTAGAC-TGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGC-GTGCGGGCGC
* * * * * * * * * *** * * **
19112286 TCAACCGATCGGAGAGGCAGAATGCGCAAGTCAGAGATCGACCTAATCCCCCCTGCGTGCTGTTG
247 TGAGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGCAG
* * * * * * *
19112351 ATCCTGCTGTCGCAACCCTCAACCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCATAA
312 -TCCCGCTGCCACAACCCTCAATCTGGTCTAG-TCTTAGACT-GGAATGAACTCCCTATGCCTAA
** ** * * * * * *
19112415 GTTAACCCACGAAACAAGCGTGCGGGTGCTGAGCCAGCCAAAGAGGCATAATGCGTAAGCCTGGG
374 GCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGG
*
19112480 ATCGGTCCGGTCCCCCCTACATGCTGCCGATCCTACTGCTGGTCCTGCTGTCGCAACCCTCGATC
439 ATCGGTCCGGTCCCCCCTAC-TGCTGCCGATCCTA-T-C--GTCCTGCTGTCGCAACCCTCGGTC
*
19112545 TGGTCCG
499 TGATCCG
19112552 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
19112616 CCCATGAAACGAGCGTGCGGGAGCTCAGCCGGTCGGAGAGGCAAAATGTGCAAGCTAGGGATCGA
65 CCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCTAGGGATCGA
* * * *
19112681 CCCGGTCCCCCCTTGTGTGCTATTGATCCTGCTGCCTCAACCTTCGGTCCGATCCAATCTTAGAC
130 CCCGATCCCCCCTTGTGTGCTATTGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGAC
*
19112746 TGGTAATGAACTCTGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGAGCCGGTCGA
195 TGG-AATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCGGTCGA
*
19112811 AGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGCCAGTCCCGCTGCCA
259 AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTG-CAGTCCCGCTGCCA
* * *
19112876 CAACCCTCAATCTGAT-TACGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGA
323 CAACCCTCAATCTGGTCTA-GTCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * * *
19112940 AACGGGCGTGGGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGTCCGATC
386 AACGGGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGGTC
* * *
19113005 CCCCCTGCGTGCTGCCGATCCTA-----CTGC---CGCAACCCTCGGTCCGATCTG
451 CCCCCTAC-TGCTGCCGATCCTATCGTCCTGCTGTCGCAACCCTCGGTCTGATCCG
* * * *
19113053 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
19113118 CGATGAAACAAGTGTGCGGGCGCTCAGCC
66 CCACGAAACGAGCGTGCGGGAGCTCAGCC
19113147 AACCAGAGAG
Statistics
Matches: 885, Mismatches: 186, Indels: 93
0.76 0.16 0.08
Matches are distributed among these distances:
499 32 0.04
500 85 0.10
501 101 0.11
503 2 0.00
504 5 0.01
505 1 0.00
510 5 0.01
511 161 0.18
512 73 0.08
513 254 0.29
514 9 0.01
515 1 0.00
516 2 0.00
519 1 0.00
520 2 0.00
521 2 0.00
523 117 0.13
524 32 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (505 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCTAGGGATCGAC
CCGATCCCCCCTTGTGTGCTATTGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACT
GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCGGTCGAAG
AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGCAGTCCCGCTGCCACAA
CCCTCAATCTGGTCTAGTCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
GCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGGTCCCCCC
TACTGCTGCCGATCCTATCGTCCTGCTGTCGCAACCCTCGGTCTGATCCG
Found at i:19113059 original size:158 final size:156
Alignment explanation
Indices: 19112580--19113081 Score: 553
Period size: 158 Copynumber: 3.2 Consensus size: 156
19112570 ACTCCGTATG
* *
19112580 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ***
19112645 CGGTCGGAGAGGCAAAATGTGCAAGCTAGGGATCGACCCGGTCCCCCCTTGTGTGCTATTGATCC
66 CGGTCGGAGAGGCAAAATGCGCAAGC-GGGGATCGGCCCGGTCCCCCC-TGCGTGCTGCCGATCC
* * *
19112710 TGCTGCCTCAACCTTCGGTCCGATCCAAT
129 TGCTGCCACAACCCTCGGTCCGAT-CTAT
* * * * *
19112739 CTTAGAC-TGGTAATGAACTCTGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
19112803 CCGGTCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGCC-AGTC
65 CCGGTCGGAGAGGCAAAATGCGCAAG-CGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGA-TC
* ** * *
19112867 CCGCTGCCACAACCCTCAATCTGAT-TACGG
128 CTGCTGCCACAACCCTCGGTCCGATCTA--T
* * *
19112897 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
19112962 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGTCCGATCCCCCCTGCGTGCTGCCGATCCT
66 CGGTCGGAGAGGCAAAATGCGCAAG-CGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
* *
19113027 ACTGCCGCAACCCTCGGTCCGATCTGAT
130 GCTGCCACAACCCTCGGTCCGATCT-AT
*
19113055 CTTAGA-TTGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
19113082 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 52, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 178 0.63
159 98 0.35
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAAAATGCGCAAGCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTG
CTGCCACAACCCTCGGTCCGATCTAT
Found at i:19113084 original size:26 final size:26
Alignment explanation
Indices: 19113055--19113107 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19113045 CCGATCTGAT
* *
19113055 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19113081 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19113107 C
1 C
19113108 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19113826 original size:26 final size:26
Alignment explanation
Indices: 19113788--19113840 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19113778 GGCTAAAAAT
19113788 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19113814 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19113840 C
1 C
19113841 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19114115 original size:159 final size:154
Alignment explanation
Indices: 19113814--19114307 Score: 441
Period size: 159 Copynumber: 3.2 Consensus size: 154
19113804 ACTCCATATG
** *
19113814 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCT-AGC
* * * * * * * *
19113879 CGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCTACATGCTATCAATCC
64 CGACC-GAGAGGCAGAATGCGCAAGCCGGGGATCTGCCCGAT-CCCCTCTGCGTGCTGTCGATCC
* *
19113944 TGCTACTGCAACCCTCAGTCCAATTCGGT
127 TGCTGCCGCAACCCTCAGTCCAA-TCGGT
* * * *
19113973 CTTAGAC-TGGGAATGAACTCCGTTTGCATTAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCT-AG
* * *
19114037 CCGACCGAAGAGGCATAATGCGTAAGCCGGGGATCTGCCCGATCCCTCTCTGCGTGCTGTCGGTC
63 CCGACCG-AGAGGCAGAATGCGCAAGCCGGGGATCTGCCCGATCCC-CTCTGCGTGCTGTCGATC
* * ** * * *
19114102 CCGCTGCCACAACCCTTGGTCCAGCTAGGG
126 CTGCTGCCGCAACCCTCAGTCCA-ATCGGT
* *
19114132 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA--AG-G-GC-GTGC-AGCCG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTAGCCG
* * **
19114191 ACAGAGAGGTAGAATGCGCAAGCCGGGGAT-TGGGTCGATCCCC-CATGCGTGCTGTCGATCCTG
66 ACCGAGAGGCAGAATGCGCAAGCCGGGGATCT-GCCCGATCCCCTC-TGCGTGCTGTCGATCCTG
* ** *
19114254 CTGTCGCAACCCTCAGTCTGATCTGAT
129 CTGCCGCAACCCTCAGTCCAATC-GGT
*
19114281 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
19114308 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 54, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
148 3 0.01
149 57 0.21
150 31 0.11
151 8 0.03
153 3 0.01
155 2 0.01
156 1 0.00
157 2 0.01
158 5 0.02
159 159 0.58
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTAGCCG
ACCGAGAGGCAGAATGCGCAAGCCGGGGATCTGCCCGATCCCCTCTGCGTGCTGTCGATCCTGCT
GCCGCAACCCTCAGTCCAATCGGT
Found at i:19115023 original size:159 final size:158
Alignment explanation
Indices: 19114675--19115177 Score: 568
Period size: 158 Copynumber: 3.2 Consensus size: 158
19114665 AACTCCGTAT
* * * *
19114675 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
19114740 CC-AGTCGAAGAGGTAGAATGCGCAAGCTGGGGACCGG-CCCGGTCCCCCCTACGTGTTGTCGAT
66 CCGA-TCGGAGAGGTAGAATGCGCAAGCCGGGGA-TGGACTCGGTCCCCCCTACGTGCTACCGAT
*
19114803 CCTGCTGTCGCAACCCTCAGTCCAGTCTGC
129 CCTGCTGCCGCAACCCTCAGTCCAGTCTGC
* * *
19114833 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
19114897 GCCGATCGGAGAGGCATAATACGCAAGCCGGGGATGGACTTGGTCCCTCTCTACGTGCTACCGGT
65 GCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATGGACTCGGTCCC-CCCTACGTGCTACCGAT
* * *
19114962 CCCGCTGCCACAACCCTCAGTCCAG-CTGGG
129 CCTGCTGCCGCAACCCTCAGTCCAGTCT-GC
* * * **
19114992 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGATGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
19115057 CCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATGGACTCGGTCCCCCCTGCGTGCTACCGATCC
66 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATGGACTCGGTCCCCCCTACGTGCTACCGATCC
* **
19115122 TGCTGCCGCAACCCTC-GGCCTAGTCTAA
131 TGCTGCCGCAACCCTCAGTCC-AGTCTGC
* *
19115150 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
19115178 TTAGATTGGG
Statistics
Matches: 288, Mismatches: 48, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
157 7 0.02
158 147 0.51
159 133 0.46
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATGGACTCGGTCCCCCCTACGTGCTACCGATCC
TGCTGCCGCAACCCTCAGTCCAGTCTGC
Found at i:19115187 original size:26 final size:26
Alignment explanation
Indices: 19115151--19115206 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19115141 CTAGTCTAAT
19115151 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
19115177 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19115203 CTTA
1 CTTA
19115207 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19115945 original size:159 final size:156
Alignment explanation
Indices: 19115545--19115959 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 156
19115535 AACTCCGTAT
* *
19115545 GCTT-GACAAGGAATGAACT-CTATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAA-CCAACCCATGAAATGAGAGTGCGGGCGCTCA
* * ** * * * * * *
19115608 GCAGGC-CGAAGAGGCAAATGCACATGTCGAGGATCAGCTCGGTCCCCTCTGTGTGCTATCGATC
64 GCCGGCTAG-AGAGGCAAATGCGTAAGCCGGGGATCAGCCCGATCCCCTCTGTGTGCTACCGATC
** * * *
19115672 TTGTTGCCGCAACCCTCGGTCCGGTTCGA
128 CCGTTGCCACAACCCTCGATCCAGTTCGA
* * * ** *
19115701 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGA-ACGTTTGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCTTATGCCTAAC-CAACCCATGAAATGAGA-GTGCGGGCGCTC
* *
19115764 AGTCGG-TCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCTCTCTGTGTGCTACCG
63 AGCCGGCT-AGAGAGGCA-AATGCGTAAGCCGGGGATCAGCCCGATCCC-CTCTGTGTGCTACCG
* * * *
19115828 ATCCCGTTGCCACAACCTTCGATCTAGTTGGG
125 ATCCCGTTGCCACAACCCTCGATCCAGTTCGA
* * *
19115860 GCTTAGACATGGAATGAACTCCTTATGCCTAATCCAACCCATGAAACGAGAGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCTTATGCCTAA-CCAACCCATGAAATGAGAGTGCGGGCGCTCAG
19115925 CCGGCTAGAGAGGCAGAATGCGTAAGCCGGGGATC
65 CCGGCTAGAGAGGCA-AATGCGTAAGCCGGGGATC
19115960 GGCCTGGTCC
Statistics
Matches: 206, Mismatches: 40, Indels: 23
0.77 0.15 0.09
Matches are distributed among these distances:
156 4 0.02
157 56 0.27
158 25 0.12
159 117 0.57
160 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAACCAACCCATGAAATGAGAGTGCGGGCGCTCAGC
CGGCTAGAGAGGCAAATGCGTAAGCCGGGGATCAGCCCGATCCCCTCTGTGTGCTACCGATCCCG
TTGCCACAACCCTCGATCCAGTTCGA
Found at i:19116438 original size:26 final size:26
Alignment explanation
Indices: 19116400--19116452 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19116390 TCAGTCTGAT
19116400 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19116426 CTTAGAC-ATGGAATGAACTCGGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
19116452 C
1 C
19116453 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19116781 original size:882 final size:878
Alignment explanation
Indices: 19113786--19117016 Score: 3348
Period size: 868 Copynumber: 3.7 Consensus size: 878
19113776 GTGGCTAAAA
*
19113786 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * *
19113851 CCACCAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCAGC
66 CCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCACAAGTCGGGGACCAGC
* * * *
19113916 CCGATCCCCCTCTACATGCTATCAATCCTGCTACTGCAACCCTCAGTCCAATTCGGTCTTAGACT
131 CCGGTCCCCCTCTACATGCTATCAATCCTGCTACCGCAACCCTCAGTCCAGTTCGATCTTAGACT
* * * * * *
19113981 GGGAATGAACTCCGTTTGCATTAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAGCCGACCGAA
196 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCGCTGAGCCGACCGGA
* ** *
19114046 GAGGCATAATGCGTAAGCCGGGGATCTGCCCGATCCCTCTCTGCGTGCTGTCGGTCCCGCTGCCA
261 GAGGCATAATGCGTAAGCCGGGGATCTACCCGATCCCTCTCTGCGTGCTACCGGACCCGCTGCCA
* * *
19114111 CAACCCTTGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG-A
326 CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * *
19114175 A--A--A---GGGCG-TGCAGCCGAC-AGAGAGGTAGAATGCGCAAGCCGGGGATTGG-GTCGAT
391 ACGAGCATGCGGGCGCT-CAACCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTCGAT
* * ** * * *
19114230 CCCCCATGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAAT
455 CCCCCCTACGTGCTACCGATCCTGCTG-CGCAACCCTCGGTCAGATCTAATCTTAGACTGGGAAT
* * * *
19114295 GAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCCACCCATGAAACGTGCGTG
519 GAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* *
19114360 -TGG-G--CA-CT---C----A-GCCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCAGCCCC
584 CGGGCGCTCAGCTGACCGGAGAGGCCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCAG-CCG
* * * * * *
19114412 GTCCCCTTCTGCGTGCTGCCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCGGTCCCGCTAGG
648 GTCCCCCTCTACGTG-TG-CGATCCTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGG
* **
19114477 GCTTAGACATGGAATGAACTCCGTATGCCCTAA-CCTAACCCATGAAACAAGCGTGCCAGCGCTC
711 GCTTAGACATGGAATGAACTCCGTATG-CCTAAGCC-AACCCATGAAACGAGCGTGCGGGCGCTC
* * * * *
19114541 AGCCAACCAGAGAGGGAGAATTCACAAG-CTGAGGATCGACTCGGT-CCCCCTGTGCGTGCTGTC
774 AGCCAACCAGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGGTCCCCCCT-TGCGTGCTGTC
* * *
19114604 GATCCTACT-GCTGGTCCTGCTA-TCGCAACCTTCGGTCTGATACG
837 GATCCTGCTAG-TGGTCCTGC-AGTCGCAACCCTCGATC-GAT-CG
*
19114648 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
19114713 CCATGAAATGAGCGTGCGGGCACTCAGCCAGTCGAAGAGGTAGAATGCGCAAG-CTGGGGACCGG
66 CCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCACAAGTC-GGGGACCAG
* * * * ** *
19114777 CCCGGTCCCCC-CTACGTGTTGTCGATCCTGCTGTCGCAACCCTCAGTCCAG-TCTGCTCTTAGA
130 CCCGGTCCCCCTCTACATGCTATCAATCCTGCTACCGCAACCCTCAGTCCAGTTC-GATCTTAGA
* * *
19114840 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCG
194 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCGCTGAGCCGACCG
* * ** ** * * *
19114905 GAGAGGCATAATACGCAAGCCGGGGATGGACTTGGTCCCTCTCTACGTGCTACCGGTCCCGCTGC
259 GAGAGGCATAATGCGTAAGCCGGGGATCTACCCGATCCCTCTCTGCGTGCTACCGGACCCGCTGC
*
19114970 CACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
324 CACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* ** * * * * * *
19115035 AAACGGGCATGCGGATGCTCAGCCG-GTCGGAGAGGTAGAATGCGCAAGTCGGGGAT-GGACTCG
389 AAACGAGCATGCGGGCGCTCAACCGACT-AGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTCG
* * *
19115098 GTCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGCCTAG-TCTAATCTTAGACTGGG
453 ATCCCCCCTACGTGCTACCGATCCTGCTG-CGCAACCCTCGGTC-AGATCTAATCTTAGACTGGG
* * *
19115162 AATGAACTCCATATGCTTAGATTGGGGATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGC
516 AATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
** * * ** * *
19115227 GTGCGGGCGCTCAG-TCGACCAAAAACGCCGACCGGAGAGGTATAATCCGTAAG-CAGAGGATCA
581 GTGCGGGCGCTCAGCT-GACCGGAGAGGCCGGTCGGAGAGGCATAATGCGTAAGCCAG-GGATCA
* * ** **
19115290 GTCCGAT-CCCC-C-AC---TGC-A---TGCTGCCGATCCTGCTGCCACAACCCTTAGTCCGATT
644 G-CCGGTCCCCCTCTACGTGTGCGATCCTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCT
* * * * *
19115345 ACGGCTTAGACATGGAATGAACTCCGAATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACT
708 AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT
* * * * * *
19115410 CGGCCAGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTTGCGTGCTGTCG
773 CAGCCAACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTTGCGTGCTGTCG
* * * *
19115475 ATCCTGCTACTAGTCCTGCTGTCGTAACCCTCAGATCGATCCG
838 ATCCTGCTAGTGGTCCTGCAGTCGCAACCCTC-GATCGAT-CG
* **
19115518 ATCTTAGACTGGGAATGAACTCCGTATGCTT-GACAAGGAATGAACTCTATATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
19115582 CCATGAAATGAGCGTGCGGGCGCTCAGCAGGCCGAAGAGGCA-AATGCACATGTCGAGGATCAGC
66 CCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCACAAGTCGGGGACCAGC
* *** * * * * * *
19115646 TCGGT-CCCCTCTGTGTGCTATCGATCTTGTTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACT
131 CCGGTCCCCCTCTACATGCTATCAATCCTGCTACCGCAACCCTCAGTCCAGTTCGATCTTAGACT
* * *** * **
19115710 GGGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGA-ACGTTTGGGCGCTGAGTCGGTCGG
196 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGA-GTGCAGGCGCTGAGCCGACCGG
* *
19115774 AGAGGCATAATGCGTAAGCCGGGGATC-AGCCCGATCCCTCTCTGTGTGCTACC-GATCCCGTTG
260 AGAGGCATAATGCGTAAGCCGGGGATCTA-CCCGATCCCTCTCTGCGTGCTACCGGA-CCCGCTG
* * * * * * *
19115837 CCACAACCTTCGATCTAGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAATCCAACCCAT
323 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * *
19115902 GAAACGAG-AGTGCGGGCGTTCAACCGGCTAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCT-
388 GAAACGAGCA-TGCGGGCGCTCAACCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTC
* ** * * *
19115965 GGTCCCCCCTACGTGCTGTCAATCCTGCTGCGGTAACCCTCGGTCAGATCTAATCTTAGACTAGG
452 GATCCCCCCTACGTGCTACCGATCCTGCTGC-GCAACCCTCGGTCAGATCTAATCTTAGACTGGG
* * * * * * *
19116030 AGTGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTTTGCCTAAGTCAACGCACGAAATGAGC
516 AATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * *
19116095 GTGCGGGCGCCCAGCTGACCGGAGAGGCTGGTCGGAAAGGCATAATGCGTAAGCCAGGGATCAGC
581 GTGCGGGCGCTCAGCTGACCGGAGAGGCCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCAGC
* *
19116160 CTGGTCCCCCTCTACGTGTTGTCGATCCTGCTGTCGGTCCTGCTGCCACATCCCTCGGTCCGGCT
646 C-GGTCCCCCTCTACGTG-TG-CGATCCTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCT
* * * *
19116225 GGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGCGGGTGCT
708 AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT
* * * * * *
19116290 CAGTCGACCAGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTTGCGTGCTGCCA
773 CAGCCAACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTTGCGTGCTGTCG
* * *
19116355 ATCTTGCTAGTGGTCCTACAGTTGCAACCCTCGATTC-AGTCTG
838 ATCCTGCTAGTGGTCCTGCAGTCGCAACCCTCGA-TCGA-TC-G
* *
19116398 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCGGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
19116463 CCATGAAACGAGCATGCGGACACTCAGCCGGTCGGAGAGGCAGAATGCATAAG-CTGGGGACCGG
66 CCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCACAAGTC-GGGGACCAG
* * * * * * ** ** * *
19116527 CCCAGTCCCTC-CTGCATACTGTCAATCCTGCTACCGTAATACTTGGT-CTGGTCTGATCTTAGA
130 CCCGGTCCCCCTCTACATGCTATCAATCCTGCTACCGCAACCCTCAGTCCAGTTC-GATCTTAGA
* * * * * * *
19116590 CTGGGAAAGAACTCCGTATGCCTAAGTTAACCCACAAAATGAGAGTGTC-GGAGCTAAGCCGGCC
194 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTG-CAGGCGCTGAGCCGACC
* * * * * **
19116654 GGAGAGGCATAATGCGAAACCCGGGGATCTACCCGATCCCTCTCTGCATGCTGCCAGACCCATTG
258 GGAGAGGCATAATGCGTAAGCCGGGGATCTACCCGATCCCTCTCTGCGTGCTACCGGACCCGCTG
19116719 CCACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
323 CCACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * ** * * *
19116783 CGAAACGGGCATACGAGCACTCAATCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCC-A
387 CGAAACGAGCATGCGGGCGCTCAACCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTC
* * * * *
19116847 GATCCACCCTACGTGCTACCGATCCTGCTACTGCAACCCTCGGTCCGGT-TCGATCTTAGACTGG
452 GATCCCCCCTACGTGCTACCGATCCTGCTGC-GCAACCCTCGGTCAGATCT-AATCTTAGACTGG
* * * *
19116911 GAATGAACTCCATATGCTTAGACTAGGGATGAACCCCGTATGCTTAAGTCAACCCACGAAATGAG
515 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
19116976 CGTACGGGTGCTCAGCCGGCCGGAGAGGCTGGTCGGAGAGG
580 CGTGCGGGCGCTCAGCTGACCGGAGAGGCCGGTCGGAGAGG
19117017 TAGAATACAC
Statistics
Matches: 1961, Mismatches: 330, Indels: 136
0.81 0.14 0.06
Matches are distributed among these distances:
860 2 0.00
861 214 0.11
862 125 0.06
866 1 0.00
867 12 0.01
868 422 0.22
869 93 0.05
870 279 0.14
871 73 0.04
872 1 0.00
874 4 0.00
875 3 0.00
876 3 0.00
877 1 0.00
878 1 0.00
879 4 0.00
880 199 0.10
881 73 0.04
882 410 0.21
883 41 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (878 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCACAAGTCGGGGACCAGC
CCGGTCCCCCTCTACATGCTATCAATCCTGCTACCGCAACCCTCAGTCCAGTTCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCGCTGAGCCGACCGGA
GAGGCATAATGCGTAAGCCGGGGATCTACCCGATCCCTCTCTGCGTGCTACCGGACCCGCTGCCA
CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACGAGCATGCGGGCGCTCAACCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTCGATC
CCCCCTACGTGCTACCGATCCTGCTGCGCAACCCTCGGTCAGATCTAATCTTAGACTGGGAATGA
ACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCTGACCGGAGAGGCCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCAGCCGGTC
CCCCTCTACGTGTGCGATCCTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTA
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAAC
CAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGATCCTGCT
AGTGGTCCTGCAGTCGCAACCCTCGATCGATCG
Found at i:19116942 original size:26 final size:26
Alignment explanation
Indices: 19116901--19116956 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
19116891 CCGGTTCGAT
*
19116901 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
*
19116927 CTTAGACTAGGG-ATGAACCCCGTATG
1 CTTAGACT-GGGAATGAACCCCATATG
19116953 CTTA
1 CTTA
19116957 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:19117576 original size:707 final size:709
Alignment explanation
Indices: 19116365--19117685 Score: 1599
Period size: 707 Copynumber: 1.9 Consensus size: 709
19116355 ATCTTGCTAG
* * *
19116365 TGGTCCTACAGTTGCAACCCTCGATTCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTA
1 TGGTCCTACAGTTGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTACGCTTA
* * *
19116430 GACATGGAATGAACTCGGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGACACTCAGCCGGT
66 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACACTCAGCCGAT
* * * *
19116495 CGGAGAGGCAGAATGCATAAGCTGGGGACCGGCCCAGTCCCTCCTGCATACTGTCAATCCTGCTA
131 CAGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCAGTCCCTCCTGCATACTGTCAATCCTACTA
** * * * * * *
19116560 CCGTAATACTTGGTCTGGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTTAACCCAC
196 CCACAACACTCGATCTGGTCCGATCTTAGACTGAGAAAGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
19116625 AAAATGAGAGTGTCGGAGCTAAGCCGGCCGGAGAGGCATAATGCGAAACCCGGGGATCTACCCGA
261 AAAATGAGAGTGTCGGAGCTAAGCAGGCCGAAGAGGCATAATGCGAAACCAGGGGATCGACCCGA
*
19116690 TCCCTCTCTGCATGCTGCCAGACCCATTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
326 TCCCTCTCTGCATGCTGCCAGACCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
* * * *
19116755 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGAGCACTCAATCGACCGGAGAGG
391 ATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCATACGAGCACTCAACCGACCGAAGAGA
* * * *
19116820 CAGAATGCGTAAGCTGGGGATCGGCCAGATCCACCCTACGTGCTACCGATCCTGCTACTGCAACC
456 CAGAATGCGTAAGCTGGGGATCAGCCAGATCCACCCTACATGCTACCGATCCTACTACCGCAACC
* * *
19116885 CTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACCCCG
521 CTCGATCCGATCT-GATCTTAGACTGGGAATGAACTCCATATCCTTAGACTAGGGATGAACCCCG
* * *
19116949 TATGCTTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGGCCGGAGAGGCTGGTCGGAG
585 TATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTGCTCAGCCGGCCGGAGAGGCTGGTCGGAG
19117014 AGGTAGAATACACAAGCCGAGGATCAACTCGAACCCCCTATATGCTGTCGATCTTACTGC
650 AGGTAGAATACACAAGCCGAGGATCAACTCGAACCCCCTATATGCTGTCGATCTTACTGC
* * *
19117074 TGGTCCTACTA-TTGCAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTACGCT
1 TGGTCCTAC-AGTTGCAACCCTCGA-TCCAGTCCGATCTTAGACTAGGAATGAACTCCGTACGCT
* * * * * **
19117137 TAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACG-AACGAGCGTGCGGGCGCTGAGTTG
64 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACACTCAGCCG
* * * * ** *
19117201 ATCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCTCTTGCGTGTTCG-CGATCCTA
129 ATCAGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCAGTCCCTCCTGCATACT-GTCAATCCTA
* * *
19117265 CTACCACAACCCTCGATCTGGTCCGATCTTAGA-TAGAGAATGAACTCTGTATGCCTAAGTCAAC
193 CTACCACAACACTCGATCTGGTCCGATCTTAGACT-GAGAAAGAACTCCGTATGCCTAAGTCAAC
* * * * *
19117329 CCACGAAATGAGCA-T-TCAGGCA-TTGAA-CAGGCCGAAGAGGCATAATGTGCAA-GAGAGGGA
257 CCACAAAATGAG-AGTGTC-GG-AGCT-AAGCAGGCCGAAGAGGCATAATGCGAAACCAG-GGGA
* * * * * * * *
19117389 TCGGCTCGATCTC-CTCTGCTTGCTGTCGGTCCTACTGCCACAACCCTCGGTCC-AGCTGGGGCT
317 TCGACCCGATCCCTCTCTGCATGCTGCCAGACCCACTGCCACAACCCTCGGTCCGA-CTGGGGCT
* ** * * *
19117452 TTGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGTGTGCGAGCGCTCAGCCG
381 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCATACGAGCACTCAACCG
* * * * * * * *
19117517 ATCGAATAGATAGAATGCGTAAG-TCGGGGATCAGCCCGGTCCCCCCTGCATGTTACCGATCCTA
446 ACCGAAGAGACAGAATGCGTAAGCT-GGGGATCAGCCAGATCCACCCTACATGCTACCGATCCTA
* * * *** *
19117581 CTACCGTAACCCTTGATCCGATCTGATGTTAGACTGGGAATGAACTTTGTATCCTTAGACTGGGG
510 CTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTAGGG
**
19117646 ATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGT
575 ATGAACCCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
19117686 GCAGACACTC
Statistics
Matches: 507, Mismatches: 93, Indels: 26
0.81 0.15 0.04
Matches are distributed among these distances:
706 2 0.00
707 239 0.47
708 170 0.34
709 95 0.19
710 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (709 bp):
TGGTCCTACAGTTGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTACGCTTA
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACACTCAGCCGAT
CAGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCAGTCCCTCCTGCATACTGTCAATCCTACTA
CCACAACACTCGATCTGGTCCGATCTTAGACTGAGAAAGAACTCCGTATGCCTAAGTCAACCCAC
AAAATGAGAGTGTCGGAGCTAAGCAGGCCGAAGAGGCATAATGCGAAACCAGGGGATCGACCCGA
TCCCTCTCTGCATGCTGCCAGACCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCATACGAGCACTCAACCGACCGAAGAGA
CAGAATGCGTAAGCTGGGGATCAGCCAGATCCACCCTACATGCTACCGATCCTACTACCGCAACC
CTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTAGGGATGAACCCCGT
ATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTGCTCAGCCGGCCGGAGAGGCTGGTCGGAGA
GGTAGAATACACAAGCCGAGGATCAACTCGAACCCCCTATATGCTGTCGATCTTACTGC
Found at i:19117649 original size:26 final size:26
Alignment explanation
Indices: 19117609--19117658 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19117599 CGATCTGATG
*
19117609 TTAGACTGGGAATGAACTTTGTATCC
1 TTAGACTGGGAATGAACTTCGTATCC
*
19117635 TTAGACTGGGGATGAACTTCGTAT
1 TTAGACTGGGAATGAACTTCGTAT
19117659 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATCC
Found at i:19118909 original size:26 final size:26
Alignment explanation
Indices: 19118880--19118932 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19118870 CCGATCTGAT
19118880 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
19118906 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19118932 C
1 C
19118933 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19119272 original size:26 final size:26
Alignment explanation
Indices: 19119221--19119273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19119211 CTGGTCTGAT
*
19119221 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
19119247 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19119273 C
1 C
19119274 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19119993 original size:17 final size:17
Alignment explanation
Indices: 19119971--19120007 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
19119961 ACTCCGTATG
19119971 CTTAGAC-ATGGAATGAA
1 CTTAGACTA-GGAATGAA
19119988 CTTAGACTAGGAATGAA
1 CTTAGACTAGGAATGAA
19120005 CTT
1 CTT
19120008 CGTATGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (17 bp):
CTTAGACTAGGAATGAA
Found at i:19120761 original size:342 final size:343
Alignment explanation
Indices: 19119988--19120761 Score: 898
Period size: 343 Copynumber: 2.3 Consensus size: 343
19119978 ATGGAATGAA
* * * * *
19119988 CTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACAAAATAAGCGTACGGGCGCTGAGC
1 CTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
* * * * * * *
19120053 CGATCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCTGGTCC
66 CGATCGAAGAGGCATAATGCGCAACCCAGGGATCGGCCCGATCCCCCTCTACGTGCTACCGGTAC
* * * * * * ** *
19120118 TGCTGCCCCAACCCTCAATCTGGCTGGGGCTTAGACATGGAATGAACTCTTTATACATAAGCCAA
131 AGCTGCCACAACCCTCAATCCGACTGGGGCTGAGAAATGGAATGAACTCCCTATACATAAACCAA
* * *
19120183 TCCATGAAACGGGCGTACGGGCGCTTAGCCGATCGGAGAGGCAAAATGCATAAGCCGGGGATCGA
196 CCCATGAAACGGGCGTACGGGCGCTTAGCCGATCGGAGAGGCAAAATCCATAAGCCGGGGATCAA
* * *
19120248 CCCGGTCCCCCCTGCGTGATGCTGATCTTGTTGTCGCAACCCTCGGTCCTATCCAATCTTAAACT
261 CCCAGTCCCCCCTGCGTGATGCTGATCTTGCTATCGCAACCCTCGGTCCTATCCAATCTTAAACT
19120313 AGGAATGAACTCCGTATG
326 AGGAATGAACTCCGTATG
* * *
19120331 CTTAGACTATGGATGAAC-TCTGTATGCCTAAGTCAACCCATAAAATGAGCGTGTGGGCGCTCAG
1 CTTAGACTAGGGATGAACTTC-GTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * * *
19120395 TCGGTCGGAGAGGCATAATGCGCAACCCAGGGATTGGCCCGATCCCCCTC-AGCGTGCTACCGGT
65 CCGATCGAAGAGGCATAATGCGCAACCCAGGGATCGGCCCGATCCCCCTCTA-CGTGCTACCGGT
* * * *
19120459 ACAGCTGCCACTACCCTCGATCCGACTGGGGCTGAGAAATGGAATGAACTCCCTATGCCTAAACC
129 ACAGCTGCCACAACCCTCAATCCGACTGGGGCTGAGAAATGGAATGAACTCCCTATACATAAACC
* * * **
19120524 AACCCATGAAACGGGCGTGCGGGCGCTCT-GCCGATCGGAGAGGCAGAATCCGTAAGTTGGGGAT
194 AACCCATGAAACGGGCGTACGGGCGCT-TAGCCGATCGGAGAGGCAAAATCCATAAGCCGGGGAT
** * * * * *
19120588 CAATTCAGT-TCCCCTGCGTGCTG-TCGATTTTGCTATCGCAACCCTCGGT-CTGGTCCGATCTT
258 CAACCCAGTCCCCCCTGCGTGATGCT-GATCTTGCTATCGCAACCCTCGGTCCT-ATCCAATCTT
* * *
19120650 AGACTGGGAGTGAACTTCC-TATG
321 AAACTAGGAATGAAC-TCCGTATG
* * * *
19120673 CTTAGACTGGGGATGGACTTCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
* *
19120738 CGA-CTGAAGAGGTAGAATGCGCAA
66 CGATC-GAAGAGGCATAATGCGCAA
19120762 GCCGAGGATC
Statistics
Matches: 358, Mismatches: 65, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
341 4 0.01
342 132 0.37
343 221 0.62
344 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (343 bp):
CTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
CGATCGAAGAGGCATAATGCGCAACCCAGGGATCGGCCCGATCCCCCTCTACGTGCTACCGGTAC
AGCTGCCACAACCCTCAATCCGACTGGGGCTGAGAAATGGAATGAACTCCCTATACATAAACCAA
CCCATGAAACGGGCGTACGGGCGCTTAGCCGATCGGAGAGGCAAAATCCATAAGCCGGGGATCAA
CCCAGTCCCCCCTGCGTGATGCTGATCTTGCTATCGCAACCCTCGGTCCTATCCAATCTTAAACT
AGGAATGAACTCCGTATG
Found at i:19120881 original size:26 final size:26
Alignment explanation
Indices: 19120843--19120895 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19120833 CCAGTCTGAT
** *
19120843 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACAAGGAATCAACTCAGTATG
*
19120869 CTTAGACAAGGAATGAACTCAGTATG
1 CTTAGACAAGGAATCAACTCAGTATG
19120895 C
1 C
19120896 CTTAACCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATCAACTCAGTATG
Found at i:19121134 original size:185 final size:184
Alignment explanation
Indices: 19120821--19121238 Score: 608
Period size: 185 Copynumber: 2.3 Consensus size: 184
19120811 TCCTGCTGTC
* * *
19120821 GCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATCAACTCTGTATGCTTAGACAAGGAATGAA
1 GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAA
* * *
19120886 CTCAGTATGCCTTAACCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGATCGGAGAGGCAGAA
66 CTCAGTATGCCTTAACCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGATCGAAAAGGCAGAA
****
19120951 TGCACAAGCCAGAGATCGGTGCGGTCTCCCCCTGCGTGCTATCGATCCTACTACT
131 TGCACAAGCCAGAGATCAACACGGTC-CCCCCTGCGTGCTATCGATCCTACTACT
*
19121006 GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATA-GAATGA
1 GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACA-AGGAATGA
* *
19121070 ACTCTA-TATGCC-TAAGCCAACCCACGAAACGAGCGTGCCGGCGCTCAGTCGGTCGAAAAGGCA
65 ACTC-AGTATGCCTTAA-CCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGATCGAAAAGGCA
* * *
19121133 GAATGCACAAGCCAGAGATCAACACGGTCCCCCCTGTGTGCTGTCGATCCTGCTACT
128 GAATGCACAAGCCAGAGATCAACACGGTCCCCCCTGCGTGCTATCGATCCTACTACT
* * *
19121190 GTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
19121239 CTAAGTTAAC
Statistics
Matches: 210, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
184 73 0.35
185 135 0.64
186 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (184 bp):
GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAA
CTCAGTATGCCTTAACCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGATCGAAAAGGCAGAA
TGCACAAGCCAGAGATCAACACGGTCCCCCCTGCGTGCTATCGATCCTACTACT
Found at i:19121558 original size:26 final size:26
Alignment explanation
Indices: 19121529--19121581 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19121519 CTGGTCCGAT
19121529 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
** * *
19121555 CTTAGGTTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19121581 C
1 C
19121582 CTAGGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19122300 original size:26 final size:26
Alignment explanation
Indices: 19122262--19122314 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19122252 GGCTCAAAAA
*
19122262 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19122288 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
19122314 C
1 C
19122315 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19122715 original size:159 final size:158
Alignment explanation
Indices: 19122287--19122715 Score: 430
Period size: 159 Copynumber: 2.7 Consensus size: 158
19122277 AACTCCGTAT
* * *
19122287 GCTTAGACATGGAATAAACTCCGTATGCCTAGGCCAACTCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * **
19122352 CCGGTCGGAGAGGCAGAATGTGCAAGTCGAGGATCGACCCGGTCCCCCCCTGCATGCTGTCGATC
66 CCGAT-AGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCCTACATGCTACCGATC
*** * *
19122417 TTGCTACCGCAACCCTAGGTCCAGTCTGA
130 CCACTACCACAACCCTAGGTCCAGGCTGA
* * * * ** *
19122446 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGAACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * ** *
19122510 GTCGATCGAAGAGGCATAATGCGCAAGTCAGGGATCGACCCAGTCCCCCTCTATGTGCTACCGGT
65 GCCGATAG-AGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCCTACATGCTACCGAT
* *
19122575 CCCACTACCACAACCCTCGGTCC-GGCTGGG
129 CCCACTACCACAACCCTAGGTCCAGGCT-GA
* * *
19122605 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
19122670 CCAGCTAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCC
66 CC-GATAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCC
19122716 TCCTACGTGC
Statistics
Matches: 213, Mismatches: 52, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
158 5 0.02
159 204 0.96
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGATAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCCTACATGCTACCGATCC
CACTACCACAACCCTAGGTCCAGGCTGA
Found at i:19122799 original size:25 final size:26
Alignment explanation
Indices: 19122764--19122815 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
19122754 CTAGTCCGAT
*
19122764 CTTAGATTGGGAATGAACT-CGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
*
19122789 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
19122815 C
1 C
19122816 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (26 bp):
CTTAGAGTGGGAATGAACTCCGTATG
Found at i:19123097 original size:171 final size:171
Alignment explanation
Indices: 19122801--19123123 Score: 441
Period size: 171 Copynumber: 1.9 Consensus size: 171
19122791 TAGAGTGGGG
* * * * * *
19122801 ATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCTGCCAGCCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAAAAAGG
* *** * *
19122866 CATAATGCGCAAGTCAGGGATCAGCCCGATCCCCTTTTACGTGCAGTCGATCCCGCTGCTGGTCC
66 CAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCATACGTACAGCCGATCCCGCTGCTGGTCC
19122931 TGCTACCA-CAACCCTCGGTCTGGCTGGGGCTTAGACATGGA
131 TGCT-CCAGCAACCCTCGGTCTGGCTGGGGCTTAGACATGGA
* *
19122972 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAAAAAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAAAAAGG
* * * * * *
19123037 CAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCATGCGTACTGCCGATCCTGCTGCTGGTCC
66 CAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCATACGTACAGCCGATCCCGCTGCTGGTCC
*
19123102 TGCTGCAGCAACCCTCGGTCTG
131 TGCTCCAGCAACCCTCGGTCTG
19123124 ATCCAATCTT
Statistics
Matches: 130, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
170 2 0.02
171 128 0.98
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAAAAAGG
CAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCATACGTACAGCCGATCCCGCTGCTGGTCC
TGCTCCAGCAACCCTCGGTCTGGCTGGGGCTTAGACATGGA
Found at i:19123146 original size:171 final size:171
Alignment explanation
Indices: 19122788--19123157 Score: 422
Period size: 171 Copynumber: 2.2 Consensus size: 171
19122778 GAACTCGTAT
* * * * * *
19122788 GCTTAGAGTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCTG
1 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *** * *
19122853 CCAGCCGAAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCTTTTACGTGCAGTCGATC
66 CCAGCCAAAAAGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCATACGTACAGCCGATC
***
19122918 CCGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGGCTGGG
131 CCGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGGCTCAA
19122959 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * *
19123023 GTCGGCCAAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCATGCGTACTGCCGAT
65 GCCAGCCAAAAAGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCATACGTACAGCCGAT
* * *
19123088 CCTGCTGCTGGTCCTGCT-GCAGCAACCCTCGGTCT-GATCCAA
130 CCCGCTGCTGGTCCTGCTACCA-CAACCCTCGGTCTGGCT-CAA
* * *
19123130 TCTTAGATTGGGAATGAACTCCATATGC
1 GCTTAGAATGGGAATGAACTCCGTATGC
19123158 TTAGACATGG
Statistics
Matches: 165, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
170 5 0.03
171 159 0.96
172 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (171 bp):
GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAGCCAAAAAGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCATACGTACAGCCGATC
CCGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGGCTCAA
Found at i:19123299 original size:354 final size:341
Alignment explanation
Indices: 19122447--19123411 Score: 918
Period size: 354 Copynumber: 2.8 Consensus size: 341
19122437 CCAGTCTGAT
* * ** *
19122447 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGAACTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * ** *
19122512 CGATCGAAGAGGCATAATGCGCAAGTCAGGGATCGACCCAGTCCCCCTCTATGTGCTACCGGTCC
66 CGGTCGAAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGT-CCCCTCTATGTGCTGTCGATCC
* ** * *
19122577 CACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 TACTGTCGCAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * * *
19122642 CCCACGAAATGGGCGTGCGGGTGCTCAGCCAGCTAGAGAGGCAGAATGCGTAAGCCGGGGATCGG
195 CCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAAAAAGGCAGAATGCGCAAGCCGGGGATCGG
* * * * *
19122707 CCTGGTCCCTCCTACGTGCTGTCGATCGTGCTACCGCAACCCTCGGTCTAGTCCGATCTTAGATT
260 CCCGGTCCCCCCTACGTACTGCCGATCGTGCTACCGCAACCCTCGGTCTAGTCCAATCTTAGATT
*
19122772 GGGAATGAACTCGTATG
325 GGGAATGAACTCATATG
* * * * *
19122789 CTTAGAGTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
19122854 CAGCCGAAGAGGCATAATGCGCAAGTCAGGGATC-AGCCCGATCCCCTTTTACGTGCAGTCGATC
66 CGGTCGAAGAGGCATAATGCGCAAGTCAGGGATCGA-CCCGGTCCCC-TCTATGTGCTGTCGAT-
* *
19122918 CCGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGT
128 -C-CTACT-GT-C-G------CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGT
* *
19122983 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAAAAAGGCAGAATGCGCA
182 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAAAAAGGCAGAATGCGCA
* * *
19123048 AGTCGGGGATCGGCCCGGTCCCCCCATGCGTACTGCCGATCCTGCTGCTGGTCCTGCTGCAGCAA
247 AGCCGGGGATCGGCCCGGTCCCCCC-TACGTACTGCCGA---T-C-G-T-G--CTAC--C-GCAA
19123113 CCCTCGGTCT-GATCCAATCTTAGATTGGGAATGAACTCCATATG
299 CCCTCGGTCTAG-TCCAATCTTAGATTGGGAATGAACT-CATATG
* * *
19123157 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
19123221 TCGGTCGGAGAGGTAGAATGCGTAAG-CCGAGGACCGACCCGGTCCCC-CTATGTGCTGTTGATC
65 TCGGTCGAAGAGGCATAATGCGCAAGTCAG-GGATCGACCCGGTCCCCTCTATGTGCTGTCGATC
* * ** * *
19123284 CTACTGTCGCAACCCTCAGTCCGG-TCCGATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGT
129 CTACTGTCGCAACCCTCGGTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
* * * * * * ** * *
19123347 TAACCCATGAAACAAGCGTGCAGGCACTGAGCCAACCGGAGAGGCATAATGCGCAAGCCGGGGAT
192 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAAAAAGGCAGAATGCGCAAGCCGGGGAT
19123412 TGGCTCAATC
Statistics
Matches: 500, Mismatches: 89, Indels: 56
0.78 0.14 0.09
Matches are distributed among these distances:
341 5 0.01
342 100 0.20
344 1 0.00
345 3 0.01
347 1 0.00
353 2 0.00
354 214 0.43
355 10 0.02
358 1 0.00
359 1 0.00
360 2 0.00
361 2 0.00
362 3 0.01
363 4 0.01
364 4 0.01
366 13 0.03
367 40 0.08
368 92 0.18
369 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (341 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGTCGAAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCTCTATGTGCTGTCGATCCT
ACTGTCGCAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCACTCAGCCAGCCAAAAAGGCAGAATGCGCAAGCCGGGGATCGGC
CCGGTCCCCCCTACGTACTGCCGATCGTGCTACCGCAACCCTCGGTCTAGTCCAATCTTAGATTG
GGAATGAACTCATATG
Found at i:19123636 original size:26 final size:26
Alignment explanation
Indices: 19123607--19123664 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
19123597 CCAATCTGAT
*
19123607 CTTAGGCTG-GGAATGAACTCTGTATG
1 CTTAGGCTGCGG-ATGAACTCCGTATG
*
19123633 CTTAGACTGCGGATGAACTCCGTATG
1 CTTAGGCTGCGGATGAACTCCGTATG
*
19123659 CCTAGG
1 CTTAGG
19123665 TCAACCCACG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGGCTGCGGATGAACTCCGTATG
Found at i:19124341 original size:26 final size:26
Alignment explanation
Indices: 19124303--19124355 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19124293 GGCTCAAAAT
*
19124303 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19124329 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
19124355 C
1 C
19124356 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19124515 original size:26 final size:26
Alignment explanation
Indices: 19124486--19124535 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19124476 CCGGTCTGCT
*
19124486 CTTAGGCTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
* *
19124512 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19124536 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:19125245 original size:26 final size:26
Alignment explanation
Indices: 19125207--19125259 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19125197 GGCTCAAAAT
*
19125207 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19125233 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
19125259 C
1 C
19125260 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19126155 original size:903 final size:901
Alignment explanation
Indices: 19123876--19127097 Score: 5534
Period size: 904 Copynumber: 3.6 Consensus size: 901
19123866 TTTTTCACTA
* *
19123876 TTTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCCTGTATTTTT
1 TTTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAAATTGGTAGAGGTGATCCTTGTATTTTT
* * *
19123941 GTTGGCATGCAAAAAAAAAACTCAGCCAAAAACTTAAAGTGGAGAAGATTTTGTGATCGTTTGAA
66 GTTGGCATGCAAAAAAAAAA-TCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAA
* *
19124006 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTAGCAGCAAACCTATAAATTCTCAAATGCT
130 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCT
19124071 CTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
195 CTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* *
19124136 CAGCACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCGCCGAAACCCCCAATGCCA
260 CAGCACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCGCCGGAACCCCCAATGCCG
*
19124201 CTGGTTAGGATCTCCAACGATGTTCCGACGATGGTGCCCCAGGTC-AAAAAAATTCGGCACCAGC
325 CTGGTTAGGATCTCCAACGATGTTCCGACGATGGTGCCCCAGG-CGAAAAAAATGCGGCACCAGC
19124265 ATATGCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGC
389 ATATGCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGC
*
19124330 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTGCGGGCGCTCAGCG
454 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTGCGGGCGCTCAGCC
* * * * *
19124395 GGTCGGAGAGGCAGAATGCGCAAGTCAAGATCAACTCGATCCCCCCTGCGTGCT-ATCGGTCTTG
519 GGCCGGAGAGGCAGAATGCGCGAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGCT-GGTCCTG
*
19124459 CTGTCGTAACCCTTGGTCCGGTCTGCTCTTAGGCTGGGAATGAACTCCGTAAGCTTAGACTGGGG
583 CTGTCGTAACCCTCGGTCCGGTCTGCTCTTAGGCTGGGAATGAACTCCGTAAGCTTAGA-T-GGG
*
19124524 ATGAACT-TCGTATGCCTAAGTCAACCCACGGAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAG
646 ATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAG
19124588 GCAAGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTG
710 GCAAGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTG
*
19124653 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCCTAAGCCTTCATGTGAAG
775 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
* *
19124718 TTTCGTGGTAAGACGACCTGTTTTCTATTTTTCACTATTTTCAAAACCTTTTGCGGTTCGGGT
840 TTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACTA-TTTCAAAACCTTTTGCGGTTCGGGT
19124781 TTTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCC-AAATATGGTAGAGGTGATCCTTGTATTTT
1 TTTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAAAT-TGGTAGAGGTGATCCTTGTATTTT
19124845 TGTTGGCATGCAAAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAA
65 TGTTGGCATGCAAAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAA
*
19124910 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGTAGCAAACCTATAAAATCTCAAATGCT
130 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCT
* *
19124975 CTTTAAGGGGTTGTGAGTTCTGGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
195 CTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
19125040 CAGCACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCGCCGGAACCCCCAATGCCG
260 CAGCACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCGCCGGAACCCCCAATGCCG
19125105 CTGGTTAGGATCTCCAACGATGTTCCGACGATGGTGCCCCAGGCGAAAAAAATGCGGCACCAGCA
325 CTGGTTAGGATCTCCAACGATGTTCCGACGATGGTGCCCCAGGCGAAAAAAATGCGGCACCAGCA
19125170 TATGCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCT
390 TATGCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCT
19125235 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTGCGGGCGCTCAGCCG
455 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTGCGGGCGCTCAGCCG
* * *
19125300 GCCGGAGAGGCAGAATGCGCGAGTCAAGATCAACCCGATCCCCCCTGCATGCTGCTGGTCCAGAT
520 GCCGGAGAGGCAGAATGCGCGAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGCTGGTCCTGCT
*
19125365 GTCGCAACCCTCGGTCCGGTCTGCTCTTAGGCTGGGAATGAACTCCGTAAGCTTAGATTGGAGAT
585 GTCGTAACCCTCGGTCCGGTCTGCTCTTAGGCTGGGAATGAACTCCGTAAGCTTAGA-TGG-GAT
19125430 GAACTCTGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAGGCA
648 GAACTCTGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAGGCA
19125495 AGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCA
713 AGATGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCA
19125560 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTT
778 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTT
19125625 CGTGGCAAGACGACCCGTTTTCTATTTTTCACTATTTCAAAACCTTTTGCGGTTCGGGT
843 CGTGGCAAGACGACCCGTTTTCTATTTTTCACTATTTCAAAACCTTTTGCGGTTCGGGT
* *
19125684 TTTTTTTAAATTTGTTTAGAAAGAGTTTTGTCCCCAAAATTGGTAAAGGTGATCCTTGTATTTTT
1 TTTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAAATTGGTAGAGGTGATCCTTGTATTTTT
* *
19125749 TTTGGCATGCAAAAAAAAAATCAGCTAAAAACTTAGAGCGGAGAAGATTTTGTGACCGTTTGAAA
66 GTTGGCATGCAAAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAA
19125814 AAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTC
131 AAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTC
* * *
19125879 TTTAAGGGGCTATGATTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
196 TTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
19125944 AGCACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCGCCGGAACCCCCAATGCCGC
261 AGCACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCGCCGGAACCCCCAATGCCGC
19126009 TGGTTAGGATCTCCAACGATGTTCCGACGATGGTGCCCCAGGCGAAAAAAATGCGGCACCAGCAT
326 TGGTTAGGATCTCCAACGATGTTCCGACGATGGTGCCCCAGGCGAAAAAAATGCGGCACCAGCAT
*
19126074 ATGCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCTGTATGCTT
391 ATGCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCTT
*
19126139 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTGCGGGCGCTCAACCGG
456 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTGCGGGCGCTCAGCCGG
* *
19126204 TCGGAGAGGCAGAATGCACGAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGCTGGTCCTGCTG
521 CCGGAGAGGCAGAATGCGCGAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGCTGGTCCTGCTG
*
19126269 TCGTAACCCTCGGTCCGATCTGCTCTTAGGCT-GG---GAA-T--G-AA-C----------T---
586 TCGTAACCCTCGGTCCGGTCTGCTCTTAGGCTGGGAATGAACTCCGTAAGCTTAGATGGGATGAA
19126312 C-C-GTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAGGCAAGA
651 CTCTGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAGGCAAGA
*
19126375 TGTGCAAGCCGGGGATCGAACAGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGC
716 TGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGC
19126440 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGT
781 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGT
19126505 GGCAAGACGACCCGTTTTCTATTTTTCACTATTTCAAAACCTTTTGCGGTTCGGGT
846 GGCAAGACGACCCGTTTTCTATTTTTCACTATTTCAAAACCTTTTGCGGTTCGGGT
19126561 TTTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAAATTGGTAGAGGTGATCCTTGTATTTTT
1 TTTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAAATTGGTAGAGGTGATCCTTGTATTTTT
* *
19126626 GTTGGCGTGCAAAAAAAAAATCAGCTAAAAACTTAAAGCAGAGAAGATTTTGTGACCGTTTGAAA
66 GTTGGCATGCAAAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAA
19126691 AAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTC
131 AAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTC
* *
19126756 TTTATGGGGGTGTGAGTTTTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
196 TTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
19126821 AGCACGCACCGCACATCATGTGCGCACACCCCCTAGTCCCCTATCGTCGGAACCCCCAATTCCGC
261 AGCACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCGCCGGAACCCCCAATGCCGC
** * *
19126886 TGGTTAGGATCTCTGACGATGTTTCGACGATGGTGCCCC-GAGCGAAAAAAGTGCGGCACCAGCA
326 TGGTTAGGATCTCCAACGATGTTCCGACGATGGTGCCCCAG-GCGAAAAAAATGCGGCACCAGCA
* * * * * * *
19126950 CAAGCCCTAGCCCAGCATGTGCA-CCTGGCTCAAAATCTTAGATTGGGAATGAACTCTGTATGCT
390 TATGCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCT
* * *
19127014 TAGACATGGAATGAACTCAATATGCCTAAGCCGACCCACGAAAC-GAGCGTGCGGGCGCTCAGCC
455 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGA-CGTGCGGGCGCTCAGCC
*
19127078 GACCGGAGAGGCAGAATGCG
519 GGCCGGAGAGGCAGAATGCG
19127098 TAAGCCGCGG
Statistics
Matches: 2228, Mismatches: 81, Indels: 45
0.95 0.03 0.02
Matches are distributed among these distances:
875 2 0.00
876 113 0.05
877 633 0.28
878 1 0.00
879 1 0.00
882 1 0.00
894 1 0.00
895 2 0.00
896 1 0.00
898 1 0.00
899 3 0.00
902 2 0.00
903 622 0.28
904 764 0.34
905 81 0.04
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (901 bp):
TTTTTTAAAATTTGTTTAGAAAGAGTTTTGTCCCCAAAATTGGTAGAGGTGATCCTTGTATTTTT
GTTGGCATGCAAAAAAAAAATCAGCTAAAAACTTAAAGCGGAGAAGATTTTGTGACCGTTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCACCGCACATCATGTGCGCACACCCCCAAGCCCCCTATCGCCGGAACCCCCAATGCCGC
TGGTTAGGATCTCCAACGATGTTCCGACGATGGTGCCCCAGGCGAAAAAAATGCGGCACCAGCAT
ATGCCCGAGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCTT
AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGGACGTGCGGGCGCTCAGCCGG
CCGGAGAGGCAGAATGCGCGAGTCAAGATCAACCCGATCCCCCCTGCGTGCTGCTGGTCCTGCTG
TCGTAACCCTCGGTCCGGTCTGCTCTTAGGCTGGGAATGAACTCCGTAAGCTTAGATGGGATGAA
CTCTGTATGCCTAAGTCAACCCACGAAACGAAAGTGTGGGCGCTCAGCCGACCAGAGAGGCAAGA
TGTGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGC
CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGT
GGCAAGACGACCCGTTTTCTATTTTTCACTATTTCAAAACCTTTTGCGGTTCGGGT
Found at i:19126161 original size:26 final size:26
Alignment explanation
Indices: 19126110--19126162 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19126100 GGCTCAAAAT
**
19126110 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19126136 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
19126162 C
1 C
19126163 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19127381 original size:159 final size:158
Alignment explanation
Indices: 19127011--19127428 Score: 453
Period size: 159 Copynumber: 2.6 Consensus size: 158
19127001 AACTCTGTAT
19127011 GCTTAGACATGGAATGAACTCAATATGCCTAAGCCGACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCAATATGCCTAAGCCGACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *** * *
19127076 CCGACCGGAGAGGCAGAATGCGTAAGCCGCGGATCGGCCCGGTCCCCCTCTGTGTGCTATAATCT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACATACTACAATCT
* ** *
19127141 TGCTGCTGCAACCCTCGGTTCGGTCTGA
131 CGCTGCCACAACCCTCAGTTCGGTCTGA
* * ** * * * *
19127169 TCTTAGAC-TGGGAATAAACTCCGTATGCATAAGTCGACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCAATATGCCTAAGCCGACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
19127233 CCCGGCCGAAGAGGCATAATGGGCAAGCCGGGGATCGACCCGGTCCCCCTCTACATACTGCCAGT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACATACT-ACAAT
*
19127298 CTCGCTGCCACAACCCTCAGTTCGGT-TGGG
129 CTCGCTGCCACAACCCTCAGTTCGGTCT-GA
** * * * *
19127328 GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCATGAAACGGGCGTGCCGGCGCTCAG
1 GCTTAGACATGGAATGAACTCAATATGCCTAAGCCGACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
19127393 CCAGTCGAAGAGGTAGAATGCGCAAGTCGGGGATCG
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCG
19127429 GCCTGATCCC
Statistics
Matches: 209, Mismatches: 47, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 102 0.49
159 105 0.50
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCAATATGCCTAAGCCGACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACATACTACAATCT
CGCTGCCACAACCCTCAGTTCGGTCTGA
Found at i:19128465 original size:159 final size:158
Alignment explanation
Indices: 19128098--19128606 Score: 350
Period size: 159 Copynumber: 3.2 Consensus size: 158
19128088 GCCTAAGCTG
* * * * * * * * * * *
19128098 GGGATCGGCACGGTCCCCCTCTGCGTGCTGTCGATCCCACTACCACAACCCTCGGTCTGACTGGG
1 GGGATCGGCCCAGTCCCCC-CTGCATGCTGTCGGTTCCACTGCAACAACCCTCGATCCGACTCGA
* * * * ** ** ***
19128163 GCTGAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGTTGCTCA
65 GCTTAAACAGGGAATGAACTCTGC-ATGCCTAAGCCAACCCAGGAAACGAACGTGCGGGCACTCA
* * * *
19128227 GTCAG-CC-AGACAGGTAGAATGCGCAAGCC-
129 -ACAGACCGA-AGAGGCAGAATGCACAAGCCA
* * * * * *
19128256 GAGGACCGGCTCGGTCCCCTCCTGCATGCTATC-GATCCTACTGTC-GCAACCCTCGATCCGA-T
1 G-GGATCGGCCCAGTCCCC-CCTGCATGCTGTCGGTTCC-ACTG-CAACAACCCTCGATCCGACT
* * * **
19128318 CCGATCTTAAACAGGGAATGAACTCTGTATGCCTAA-CTCAACCCATGAAACGAGTGTGCGGGCA
62 -CGAGCTTAAACAGGGAATGAACTCTGCATGCCTAAGC-CAACCCAGGAAACGAACGTGCGGGCA
* * * *
19128382 CTGAACCGACCGAAGAGGCATAATGCGCAAGCCA
125 CTCAACAGACCGAAGAGGCAGAATGCACAAGCCA
* * * * *
19128416 GGGATCGGCCCAGTCCACCTCTGCATGCTGTCGGTTCCACTGCAACAACCCTCGGTCTGACTGGG
1 GGGATCGGCCCAGTCC-CCCCTGCATGCTGTCGGTTCCACTGCAACAACCCTCGATCCGACTCGA
* * * ** *
19128481 GCTTAGACATGGAATGAACTCTGCATGGCTAAGCCAACCCAGGAAACGAACGTGCGGGGGCTCAG
65 GCTTAAACAGGGAATGAACTCTGCATGCCTAAGCCAACCCAGGAAACGAACGTGCGGGCACTCAA
* * *
19128546 CAGATCGGAGAGGCAGAATGCACAGGCCA
130 CAGACCGAAGAGGCAGAATGCACAAGCCA
* *
19128575 GGGATCGGCCCGGTCCCCCCTGCGTGCTGTCG
1 GGGATCGGCCCAGTCCCCCCTGCATGCTGTCG
19128607 CAACCCTCGG
Statistics
Matches: 272, Mismatches: 64, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
158 22 0.08
159 238 0.88
160 12 0.04
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
GGGATCGGCCCAGTCCCCCCTGCATGCTGTCGGTTCCACTGCAACAACCCTCGATCCGACTCGAG
CTTAAACAGGGAATGAACTCTGCATGCCTAAGCCAACCCAGGAAACGAACGTGCGGGCACTCAAC
AGACCGAAGAGGCAGAATGCACAAGCCA
Found at i:19128725 original size:146 final size:147
Alignment explanation
Indices: 19128482--19128750 Score: 321
Period size: 146 Copynumber: 1.8 Consensus size: 147
19128472 CTGACTGGGG
* * *
19128482 CTTAGACATGGAATGAACTCTGCATGGCTAAGCCAACCCAGGAAACGAACGTGCGGGGGCTCAGC
1 CTTAGACATGGAATGAACTCTGCATGGCTAAGCCAACCCACGAAACGAACGTACGGGGGCTCACC
* * * * *
19128547 AGATCGGAGAGGCAGAATGCACAGGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGCAAC
66 AGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGCAAC
19128611 CCTCGGTCTGGTCTGAT
131 CCTCGGTCTGGTCTGAT
* * * * *
19128628 CTTAGAC-TAGGAATGAACTCTGTAT-GCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTGA
1 CTTAGACAT-GGAATGAACTCTGCATGGC-TAAGCCAACCCACGAAACGAACGTACGGGGGCTCA
* * ** *
19128691 CCCA-ACCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCTGGTCCCCCTCTACGTGCTG
64 -CCAGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTG
19128751 CTAGTCCCGC
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
145 3 0.03
146 87 0.86
147 11 0.11
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.17
Consensus pattern (147 bp):
CTTAGACATGGAATGAACTCTGCATGGCTAAGCCAACCCACGAAACGAACGTACGGGGGCTCACC
AGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGCAAC
CCTCGGTCTGGTCTGAT
Found at i:19129668 original size:26 final size:26
Alignment explanation
Indices: 19129639--19129691 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19129629 CCGGTCTGAT
*
19129639 CTTACAC-TAGGAATGAACTCTGTATG
1 CTTACACAT-GGAATGAACTCCGTATG
* *
19129665 CTTAGACATGGAATGAATTCCGTATG
1 CTTACACATGGAATGAACTCCGTATG
19129691 C
1 C
19129692 CTAAACCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACATGGAATGAACTCCGTATG
Found at i:19130895 original size:26 final size:26
Alignment explanation
Indices: 19130866--19130918 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19130856 GGCCCAAAAT
*
19130866 CTTAGAC-TGCAAATGAACTTCGTATG
1 CTTAGACATG-AAATGAACTCCGTATG
*
19130892 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
19130918 C
1 C
19130919 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCGTATG
Found at i:19131442 original size:26 final size:26
Alignment explanation
Indices: 19131392--19131444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19131382 CCGGTCTGAT
**
19131392 CTTAGACTGGGAATGAACTTGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19131418 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19131444 C
1 C
19131445 CAGTCATCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19131869 original size:159 final size:157
Alignment explanation
Indices: 19131678--19132089 Score: 409
Period size: 159 Copynumber: 2.6 Consensus size: 157
19131668 ATGTGAAAAT
* * * * * *
19131678 CAGGGATCGACCCGGTTCACCCCTGCATGCTGTCGATCCTGCTATCGTAACTCTCAGTCTGGTCT
1 CAGGGATCGGCCCGG-TCCCCCCTGCGTGCTGTCGATCCTGCTA-CGCAACCCTCAGTCCGGTCT
* ** *
19131743 GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGTGGGCA-CT
64 GATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGG-AGCT
* *
19131807 GAGCCGATCGAAGAGGCATAATGCACAAGC
128 GAGCCGACCGAAGAGGCAGAATGCACAAGC
* * * * * *
19131837 CGGGGATCGGCCCGGTCCCCCTCTGCGCGCTGTCGGTCCTGTTACCACAACCCTC-GATCCAG-C
1 CAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTA-CGCAACCCTCAG-TCCGGTC
** * * * *
19131900 TAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGAG
63 T-GATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGGAG
* * * *
19131964 CTGAGCCGGCCGGAGAGGTAGATTGCACAAGC
126 CTGAGCCGACCGAAGAGGCAGAATGCACAAGC
* * * * *
19131996 CAGGGATCGGCTCGGTCCCCCCCGCGTGCTGTCAATCCTGCTACTGCAACCCTTAGTCCGGTTTG
1 CAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTAC-GCAACCCTCAGTCCGGTCTG
*
19132061 ATCTTAGAGTGGGAATGAACTCCGTATGC
65 ATCTTAGACTGGGAATGAACTCCGTATGC
19132090 TTAGACTGGG
Statistics
Matches: 200, Mismatches: 44, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 61 0.31
159 136 0.68
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACGCAACCCTCAGTCCGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGGAGCTGAG
CCGACCGAAGAGGCAGAATGCACAAGC
Found at i:19132092 original size:26 final size:26
Alignment explanation
Indices: 19132063--19132115 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19132053 CCGGTTTGAT
*
19132063 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19132089 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19132115 C
1 C
19132116 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19132466 original size:26 final size:26
Alignment explanation
Indices: 19132415--19132467 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19132405 CCGGTCCGAT
*
19132415 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
19132441 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACATATG
19132467 C
1 C
19132468 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:19132865 original size:159 final size:155
Alignment explanation
Indices: 19132440--19132880 Score: 422
Period size: 159 Copynumber: 2.8 Consensus size: 155
19132430 AACTCCATAT
* * *
19132440 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
19132505 CCGGTCAGAGAGGTAAAATGCGTAAGCCGAGGATCAACCCGATCCCCCCCTGCATGCTGTC-GTT
66 CCGGCCAGAGAGGTAAAATACGCAAGCCG-GGATCAGCCTGGT-CCCCCCTGCATGCTGTCGGTT
** *
19132569 CCTACTGCAACCCTCGGTCTGACCCGA
129 CCTACCACAACCCTCGGTCCGACCCGA
* * * * *
19132596 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAG-TCAACCCACGAAACGAGCGTGTGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACAAAACGAGCGTGCGGGCGCTC
* * * * * **
19132659 AGCCAGCCAGAGAGGCATAATACGCAAGCCGGGGATC-GACTCAGTCCCCCTCTGTGTGCTGTCG
64 AGCCGGCCAGAGAGGTAAAATACGCAAGCC-GGGATCAGCCT-GGTCCCCC-CTGCATGCTGTCG
* **** *
19132723 GTCTCGCTGCCACAACCCTCGGTCCGGTTGGG
126 GT-TC-CTACCACAACCCTCGGTCCGACCCGA
* ** * *
19132755 GCTTAGACATGTAATGAACTCCGTATGCCTAAGCTAACCCACAAAAATAACGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * *
19132820 CTGGCCGGAGAGGTAGAATACGCAAGCCAGGGATCAGCCTGGTCCCCCCTGCATGCTGTCG
66 CCGGCCAGAGAGGTAAAATACGCAAGCC-GGGATCAGCCTGGTCCCCCCTGCATGCTGTCG
19132881 CAACCCTCGG
Statistics
Matches: 224, Mismatches: 50, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
155 7 0.03
156 92 0.41
157 3 0.01
158 13 0.06
159 104 0.46
160 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGAGGTAAAATACGCAAGCCGGGATCAGCCTGGTCCCCCCTGCATGCTGTCGGTTCC
TACCACAACCCTCGGTCCGACCCGA
Found at i:19133583 original size:159 final size:157
Alignment explanation
Indices: 19133361--19133720 Score: 391
Period size: 159 Copynumber: 2.3 Consensus size: 157
19133351 CGGGGATTGG
* ** * * * * * **
19133361 CCCGGTCCCCCCTACGTGCTGTCGATCCTACGACCGCAACCCTTGGTCCGGTCT-GATCTTAGAC
1 CCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTACCACAACCCTCGATCC-GACTGGGGCTTAGAC
* * * *
19133425 -TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCCGACCG
65 ATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGC-CTGACCCGACCG
* * * * *
19133489 GATAGGCATAATGCGCAACCCGGGGATTGA
128 GAGAGGCAGAATGCACAACCCGAGGATCGA
* * *
19133519 CCCGGTCCTTCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGAC
1 CCCGGTCC-CCCCTGCGTGCTGTCGATCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGAC
* * * * **
19133584 ATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCCTTACCCGGTCGGA
65 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCCTGACCCGACCGGA
*
19133649 GAGGCAGAATGCACAAGCCGAGGATCGA
130 GAGGCAGAATGCACAACCCGAGGATCGA
* *
19133677 CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTC
1 CCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTACCACAACCCTC
19133721 TGTCCAGTTT
Statistics
Matches: 165, Mismatches: 34, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
157 31 0.19
158 51 0.31
159 81 0.49
160 2 0.01
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.19
Consensus pattern (157 bp):
CCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACA
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCCTGACCCGACCGGAG
AGGCAGAATGCACAACCCGAGGATCGA
Found at i:19133775 original size:26 final size:26
Alignment explanation
Indices: 19133735--19133785 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19133725 CAGTTTGATG
*
19133735 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
19133761 TTAGACTAGGG-ATGAACTCCGTATG
1 TTAGACT-GGGAATGAACTCCGTATG
19133786 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:19134505 original size:26 final size:26
Alignment explanation
Indices: 19134467--19134519 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19134457 GGCTCAAAAT
19134467 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19134493 CTTAGAC-GTGGAATGAACTCTGTATG
1 CTTAGACTG-GGAATGAACTCTGTATG
19134519 C
1 C
19134520 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19134983 original size:158 final size:158
Alignment explanation
Indices: 19134492--19135113 Score: 541
Period size: 158 Copynumber: 3.9 Consensus size: 158
19134482 AACTCTGTAT
** ** * * * *
19134492 GCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACTTACGAAATGAATGTGCGGGCGCTCAG
1 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAG
* * * *
19134557 CCAGTCAGAGAGGCAGAATGCACAAGCCG-GTGATC-GACCCAGTCCCCCCTACGTGCTATCGAT
66 CCAGCCGGAGAGGCAGAATGCACAAGCCGAG-GATCAG-CCCAGTCCCCCCTGCGTGCTGTCGAT
* * ***
19134620 CCTGCTGCTACAACCCTCG-GCTCGG-TCCAA
129 CCTGCTGCCACAACCCTCGATCT-GGCT-GGG
* * * ** * * *
19134650 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTTAACCCATGAAAC-GAGCGTGTGGGTGCTG
1 GCTTAGACGT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGTGCTC
* * * * * * * * *
19134713 AGCCAGTCGAACAGGCATAATGCATAAGCTGGGGAT-AGGCCCGGTCCCCCTCTGCGTGCTGCCG
64 AGCCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCA-GCCCAGTCCCCC-CTGCGTGCTGTCG
* *
19134777 ATCCTGCTACCATAACCCTC-AGTCTGGCTGGG
127 ATCCTGCTGCCACAACCCTCGA-TCTGGCTGGG
* *
19134809 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGACGTGCGGGTGCTCAG
1 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAG
*
19134874 CCAGCCGGAGAGGTAGAATGCGA-AAGCCGAGGATCAGCCCAGTCCCCCCTGCGTGCTGTCGATC
66 CCAGCCGGAGAGGCAGAATGC-ACAAGCCGAGGATCAGCCCAGTCCCCCCTGCGTGCTGTCGATC
* *
19134938 CCGCTGCCACGACCCTCGATCTGGCTGGG
130 CTGCTGCCACAACCCTCGATCTGGCTGGG
* * * * *
19134967 GCTTAGACGTGGAATGAACTCCCTATGACTAAGCCAACCCACAAAACAGG-CATACAGG-GCATT
1 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGACGTGCGGGTGC--T
* * * ** *
19135030 CAG-CAGGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCTGGTCCCTCCTGCGTGC-GTCG
63 CAGCCA-GCCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCAGTCCCCCCTGCGTGCTGTCG
* *
19135093 ATCCTGCTACCGCAACCCTCG
127 ATCCTGCTGCCACAACCCTCG
19135114 GCCTGGTCCG
Statistics
Matches: 374, Mismatches: 71, Indels: 38
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 192 0.51
159 170 0.45
160 8 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAG
CCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCAGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGATCTGGCTGGG
Found at i:19135531 original size:26 final size:26
Alignment explanation
Indices: 19135495--19135547 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19135485 CTGGTCTGAT
19135495 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19135521 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19135547 C
1 C
19135548 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19143032 original size:26 final size:26
Alignment explanation
Indices: 19142994--19143046 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19142984 TCGGTCCGAT
19142994 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19143020 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19143046 C
1 C
19143047 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19144956 original size:26 final size:26
Alignment explanation
Indices: 19144918--19144970 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19144908 GGGTCAAAAT
19144918 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19144944 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
19144970 C
1 C
19144971 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19145991 original size:26 final size:26
Alignment explanation
Indices: 19145941--19145993 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19145931 CCAGTCCGAT
**
19145941 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19145967 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19145993 C
1 C
19145994 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19146001 original size:196 final size:193
Alignment explanation
Indices: 19145577--19146103 Score: 639
Period size: 196 Copynumber: 2.7 Consensus size: 193
19145567 TTCGGCTGGG
* * * * * *
19145577 GCTTAGACATGGAATAAACTTCGTATACCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
19145641 CCGACTGGAGAGGAAAAATGCGCAAGCCGGCGATCGACTCGATCCCTCCTGTGTGCTATCGATCC
66 TCGAC-GGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCC-CCTGTGTGCTGTCGATCC
* ** *
19145706 TGCTT--TGGTCCTACTATCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGATTGAACTCGTA
129 TG-TTGCTGGTCCTACTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCGTA
19145769 T
193 T
**
19145770 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
19145835 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCACCCCTGTGTGCTGTCGATCT
66 TCGA-CGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATC-CCCCTGTGTGCTGTCGATCC
* * *
19145900 TGTTGCTGGTCCTGCTACCGTAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTTTGTA
129 TGTTGCTGGTCCTACTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC-TCGTA
19145965 T
193 T
* ** *
19145966 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGCACGGGTGCTCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * **
19146031 TCGACCGGAGAGGTAGAATGAGCAAGCCGAGGACCGGCCC-AGTCCCCCCTGCATGCTGTCGATC
66 TCGA-CGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGA-T-CCCCCTGTGTGCTGTCGATC
*
19146095 CTGCTGCTG
128 CTGTTGCTG
19146104 CAACCCTCGG
Statistics
Matches: 288, Mismatches: 38, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
193 58 0.20
194 55 0.19
195 51 0.18
196 123 0.43
197 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (193 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCGACGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTGTGTGCTGTCGATCCTG
TTGCTGGTCCTACTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCGTAT
Found at i:19146373 original size:159 final size:158
Alignment explanation
Indices: 19145966--19146467 Score: 444
Period size: 158 Copynumber: 3.2 Consensus size: 158
19145956 AACTTTGTAT
* **
19145966 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGCACGGGTGCTCT-
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCT-TA
* * * *
19146030 GTCGACCGGAGAGGTAGAATGAGCAAGCC-GAGGACCGGCCCAGTCCCCCCTGCATGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCAGTCCCCCCTGCATGCTGTCGAT
* ** * *
19146094 CCTGCTGCTGCAACCCTCGGTCCGATCTGA
129 CCCGCTGCCACAACACTCGGTCCGAGCTGA
* * * * *
19146124 TCATAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCG-TTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTT-
* ** * * * * **
19146187 ACCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATTGGCCC-GATCCCCCTTTGTGTGCTGTCG
64 AGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAG-TCCCCC-CTGCATGCTGTCG
*
19146251 ATCCCGCTGCCACAACACTCGGTCCG-GCTGGG
127 ATCCCGCTGCCACAACACTCGGTCCGAGCT-GA
* ** *
19146283 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTTAG
* * * * * * * * *
19146348 CCGACCGGAGAGGCAGATTGCGCAAGCTAGGGATCGACTCGGTCCCCTCTGCGTGCTGCCAATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCC
* * * * *
19146413 TGCTGTCGCAACCCTTGGTCC-AGTCTGA
131 CGCTGCCACAACACTCGGTCCGAG-CTGA
* *
19146441 TCTTAGAC-TGGGAATGAACTCCGTATG
1 GCTTAGACAT-GGAATGAACTCCATATG
19146468 TTTAGACTGG
Statistics
Matches: 272, Mismatches: 59, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 4 0.01
158 141 0.52
159 122 0.45
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTTAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCC
CGCTGCCACAACACTCGGTCCGAGCTGA
Found at i:19146483 original size:26 final size:26
Alignment explanation
Indices: 19146443--19146493 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19146433 CAGTCTGATC
19146443 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
19146469 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
19146494 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:19147203 original size:26 final size:26
Alignment explanation
Indices: 19147165--19147217 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19147155 GGCTCAAACT
*
19147165 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19147191 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19147217 C
1 C
19147218 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19147484 original size:158 final size:158
Alignment explanation
Indices: 19147190--19147492 Score: 387
Period size: 158 Copynumber: 1.9 Consensus size: 158
19147180 AACTCCGTAT
*
19147190 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAACCAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAACCAAGCGTGCGGGCGCTCAA
** * * * * * *
19147255 CGAGTTGGAGATGCGAAATATGCAAGTTAGGGATTAGCCCGGTCCCCCTTGCATGCTGCTGGTCT
66 CGAGCCGGAGAGGCAAAATATGCAAGTCAGGGATCAGCCCGGTCCCCCCTGCATGCTGCTGATCT
*
19147320 CGCTGCCACAACCCTCAGTCCAGCTGGG
131 CACTGCCACAACCCTCAGTCCAGCTGGG
* * * * *
19147348 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAAC-GGACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAACCAAG-CGTGCGGGCGCTCA
* * * *
19147412 ACGCGCCGGAGAGGCAAAATGTGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTG-TCGAT
65 ACGAGCCGGAGAGGCAAAATATGCAAGTCAGGGATCAGCCCGGTCCCCCCTGCATGCTGCT-GAT
19147476 C-CTACTGCCACAACCCT
129 CTC-ACTGCCACAACCCT
19147493 TGGACCGGTT
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
157 3 0.02
158 120 0.98
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAACCAAGCGTGCGGGCGCTCAA
CGAGCCGGAGAGGCAAAATATGCAAGTCAGGGATCAGCCCGGTCCCCCCTGCATGCTGCTGATCT
CACTGCCACAACCCTCAGTCCAGCTGGG
Found at i:19147536 original size:26 final size:26
Alignment explanation
Indices: 19147507--19147559 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19147497 CCGGTTCGAT
19147507 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
19147533 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19147559 C
1 C
19147560 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19147768 original size:26 final size:26
Alignment explanation
Indices: 19147717--19147769 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19147707 CCAATCCGAT
* *
19147717 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
19147743 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
19147769 C
1 C
19147770 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:19148226 original size:184 final size:184
Alignment explanation
Indices: 19147908--19148266 Score: 461
Period size: 184 Copynumber: 2.0 Consensus size: 184
19147898 CTTAGACCTT
* * * * *
19147908 GAATGAACTCTGTATGCCTAAGCCCACCCACGAAATAAGCGTGCGGTGCTCAACCGATCAGAGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCATACGGCGCTCAACCGATCAGAGAG
* * * * * * * *
19147973 GCAGAATGCATAAGCCGGGGATCGGCCTGGTCCCTCCCTGCGTGCTGTCAATCCTGCTATCATAA
66 GCAGAATGCACAAGCCAGGGACCGACCCGATCCCTCCCTGCGTGCTGTCAATCCTGCTACCACAA
** * *
19148038 CCCTTAGGCCAG-TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGGCATG
131 CCCTT-GGCCAGATCCAATCTTAGACTGGAAATAAACTCCATATGCTTAGGCATG
* * * *
19148092 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAGCCGGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCATAC-GGCGCTCAACCGATCAGAGA
*
19148157 GGCAGAATGCGCAAGCCAGGGACCGACCCGATCCC-CCCTGCGTGCTGTCAATCCTGCTACCACA
65 GGCAGAATGCACAAGCCAGGGACCGACCCGATCCCTCCCTGCGTGCTGTCAATCCTGCTACCACA
* * *
19148221 ACCCTTGGTCTGATCCAATCTTAGACTGGAAATAAACTCCGTATGC
130 ACCCTTGGCCAGATCCAATCTTAGACTGGAAATAAACTCCATATGC
19148267 CTAAGTCAAC
Statistics
Matches: 148, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 4 0.03
184 100 0.68
185 44 0.30
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (184 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCATACGGCGCTCAACCGATCAGAGAG
GCAGAATGCACAAGCCAGGGACCGACCCGATCCCTCCCTGCGTGCTGTCAATCCTGCTACCACAA
CCCTTGGCCAGATCCAATCTTAGACTGGAAATAAACTCCATATGCTTAGGCATG
Found at i:19148430 original size:159 final size:158
Alignment explanation
Indices: 19148088--19148497 Score: 502
Period size: 159 Copynumber: 2.6 Consensus size: 158
19148078 TATGCTTAGG
* *
19148088 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAGCCGGTCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCG
* * * * *
19148153 GAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGCTACC
66 GAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCCAGCTACC
* *
19148218 ACAACCCTTGGTCTGATCCAATCTTAGA
131 ACAACCCTCGGTCTGATCCAATCATAGA
* * * * * * * *
19148246 C-TGGAAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCACTGAGCCGGCC
1 CATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTC
* ** * *
19148310 GGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCACCTTTGCGTGCTGCCGATCCAGCTG
65 GGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCC-CCCCTGCGTGCTGCCAATCCAGCTA
* * ***
19148375 CTACAACCCTCGGTCTG-GCTGGGTCATAGA
129 CCACAACCCTCGGTCTGATC-CAATCATAGA
* *
19148405 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGTCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCG
19148470 GAGAGGCAGAATGCGCAA-TACGGGGATC
66 GAGAGGCAGAATGCGCAAGT-CGGGGATC
19148498 TGCCTGGTCC
Statistics
Matches: 209, Mismatches: 38, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
157 3 0.01
158 87 0.42
159 116 0.56
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (158 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCG
GAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCCAGCTACC
ACAACCCTCGGTCTGATCCAATCATAGA
Found at i:19149316 original size:26 final size:26
Alignment explanation
Indices: 19149278--19149330 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19149268 GGCTCAAACT
19149278 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19149304 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19149330 C
1 C
19149331 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19149902 original size:25 final size:26
Alignment explanation
Indices: 19149851--19149902 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
19149841 CTGGTTTGAT
*
19149851 CTTAGACTAGGGAATAAACCCGTATG
1 CTTAGACTAGGGAATAAACCCGCATG
* *
19149877 CTTAGAC-ATGGAATAAACCTGCATG
1 CTTAGACTAGGGAATAAACCCGCATG
19149902 C
1 C
19149903 CTAAAGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (26 bp):
CTTAGACTAGGGAATAAACCCGCATG
Found at i:19150207 original size:159 final size:158
Alignment explanation
Indices: 19150044--19150663 Score: 574
Period size: 159 Copynumber: 3.9 Consensus size: 158
19150034 CTGGTCTGAT
** * * * *
19150044 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * **
19150108 CC-AGCCGGAGAGGCATAATGCGCAAG-TCGGGGATCGGTCCGGTCCCCCTCTATGTGCTGTCGG
65 CCGA-TCGGAGAGGCATAATGCGCAAGCT-GGGGATCGGACCGGTCCCCCTCTGCGTGCTGTCGG
19150171 TCCCGCTGCCACAACCCTCGATCCAGCTGGGG
128 TCCCGCTGCCACAACCCTCGATCC-GCTGGGG
* * * * * *
19150203 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCAGGTGCTCAGA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
19150268 CGGTCGGAGATGCAAAATGCGTAAGCTGGGGATC-GACCTGGCCCCCCT-TGCGTGCTGTCGATA
66 CGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGGACC-GGTCCCCCTCTGCGTGCTGTCGGTC
* * * * * **
19150331 CTGCTGCCGCAACCCTCGATCTGGTCCGAT
130 CCGCTGCCACAACCCTCGATCCGCT-GGGG
* * * * * * *
19150361 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * **
19150425 CCGATCGGAGAGGAATAATGCACAAG-TCGGTGATCGGCCCGGTCCCCCTCTGCATGCTACCGGT
65 CCGATCGGAGAGGCATAATGCGCAAGCT-GGGGATCGGACCGGTCCCCCTCTGCGTGCTGTCGGT
*
19150489 CCCGCTACCACAACCCTCGATCCGACTGGGG
129 CCCGCTGCCACAACCCTCGATCCG-CTGGGG
* * *
19150520 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
19150585 CGATCGGAGAGGCAGAATGCGGAAGCTGGGGATC-GACCCAGTCCCAC-CTGCGTGCTACCGATC
66 CGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGGA-CCGGTCCCCCTCTGCGTGCTGTCGGTC
* *
19150648 CTGCTGCCGCAACCCT
130 CCGCTGCCACAACCCT
19150664 TTATTTGGTC
Statistics
Matches: 364, Mismatches: 84, Indels: 27
0.77 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 147 0.40
159 208 0.57
160 5 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGGACCGGTCCCCCTCTGCGTGCTGTCGGTCC
CGCTGCCACAACCCTCGATCCGCTGGGG
Found at i:19150387 original size:158 final size:157
Alignment explanation
Indices: 19150001--19150703 Score: 528
Period size: 159 Copynumber: 4.4 Consensus size: 157
19149991 CCGCCTCCTA
* * * * *
19150001 CGTGCTGTTGATCATGCTACCGCAGCCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAAC-TC
1 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCTGGTCCGATCTTAGACT-GGAATGAACTTC
* * * * * *
19150064 TGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGCGCTGAGCC-AGCCGGAGAGGCATAATG
64 -GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGA-TCGGAGAGGCAAAATG
* * *
19150128 CGCAAGTCGGGGATCGGTCCGGTCCCCCTCTA
127 CGCAAGTCGGGGATC-GACCGGCCCCCCTCTG
* * * * ** * ** *
19150160 TGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCAG-CTGGGGCTTAGACATGGAATGAACTCC
1 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTC-CGATCTTAGAC-TGGAATGAACTTC
* * * * * * * * *
19150224 CTATGCCTAAGCCAACCTACGAAACGGGCGTGCAGGTGCTCAGACGGTCGGAGATGCAAAATGCG
64 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCG
*
19150289 TAAG-CTGGGGATCGACCTGGCCCCCCT-TG
129 CAAGTC-GGGGATCGACC-GGCCCCCCTCTG
*
19150318 CGTGCTGTCGATACTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCG
1 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACT-GGAATGAACTTCG
* * * * * *
19150383 TATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGTGCTGAGCCGATCGGAGAGG-AATAATGCA
65 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAA-AATGCG
* * *
19150447 CAAGTCGGTGATCGGCCCGGTCCCCCTCTG
129 CAAGTCGGGGATC-GACCGGCCCCCCTCTG
* ** * * * * * * * ** *
19150477 CATGCTACCGGTCCCGCTACCACAACCCTCGATC-CGACTGGGGCTTAGACATGGAATGAACTCC
1 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTC-CGATCTTAGAC-TGGAATGAACTTC
* * * * *
19150541 CTATGCCTAAGCCAACCCATAAAACGGGTGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCG
64 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCG
* * * *
19150606 GAAG-CTGGGGATCGACCCAGTCCCAC-CTG
129 CAAGTC-GGGGATCGA-CCGGCCCCCCTCTG
** ** * *
19150635 CGTGCTACCGATCCTGCTGCCGCAACCCTTTATTTGGTCCGATCTTAGACTATGAATGAAC-TCG
1 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACT-GGAATGAACTTCG
19150699 TATGC
65 TATGC
19150704 TTAGACTTTG
Statistics
Matches: 419, Mismatches: 105, Indels: 42
0.74 0.19 0.07
Matches are distributed among these distances:
157 10 0.02
158 170 0.41
159 234 0.56
160 5 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGAATGAACTTCGT
ATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCA
AGTCGGGGATCGACCGGCCCCCCTCTG
Found at i:19150594 original size:317 final size:314
Alignment explanation
Indices: 19150001--19150703 Score: 926
Period size: 317 Copynumber: 2.2 Consensus size: 314
19149991 CCGCCTCCTA
* * * *
19150001 CGTGCTGTTGATCATGCTACCGCAGCCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTG
1 CGTGCTGTCGATC-TGCTGCCGCAACCCTCA-TCTGGTCCGATCTTAGACTGGGAATGAACTC-G
* * * *
19150066 TATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGC
63 TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGAATAATGCAC
* ** ** *
19150131 AAGTCGGGGATCGGTCCGGTCCCCCTCTATGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCA
128 AAGTCGGGGATCGGCCCGGTCCCCCTCTACATGCTACCGGTCCCGCTACCACAACCCTCGATCCA
* * *
19150196 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCAGGT
193 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGC
* * * * *
19150261 GCTCAGACGGTCGGAGATGCAAAATGCGTAAGCTGGGGATCGA-CCTGGCCCCCCTTG
258 GCTCAGACGATCGGAGAGGCAAAATGCGGAAGCTGGGGATCGACCCAGGCCCACC-TG
19150318 CGTGCTGTCGATACTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCG
1 CGTGCTGTCGAT-CTGCTGCCGCAACCCTC-ATCTGGTCCGATCTTAGACTGGGAATGAAC-TCG
* * * *
19150383 TATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGTGCTGAGCC-GATCGGAGAGGAATAATGCA
63 TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAG-CCGGAGAGGAATAATGCA
* *
19150447 CAAGTCGGTGATCGGCCCGGTCCCCCTCTGCATGCTACCGGTCCCGCTACCACAACCCTCGATCC
127 CAAGTCGGGGATCGGCCCGGTCCCCCTCTACATGCTACCGGTCCCGCTACCACAACCCTCGATCC
* * *
19150512 -GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGTGTGCGG
192 AG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAG
* * *
19150576 GCGCTCAGCCGATCGGAGAGGCAGAATGCGGAAGCTGGGGATCGACCCAGTCCCACCTG
256 GCGCTCAGACGATCGGAGAGGCAAAATGCGGAAGCTGGGGATCGACCCAGGCCCACCTG
** * * **
19150635 CGTGCTACCGATCCTGCTGCCGCAACCCTTTATTTGGTCCGATCTTAGACTATGAATGAACTCGT
1 CGTGCTGTCGAT-CTGCTGCCGCAACCC-TCATCTGGTCCGATCTTAGACTGGGAATGAACTCGT
19150700 ATGC
64 ATGC
19150704 TTAGACTTTG
Statistics
Matches: 338, Mismatches: 41, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
316 10 0.03
317 315 0.93
318 13 0.04
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (314 bp):
CGTGCTGTCGATCTGCTGCCGCAACCCTCATCTGGTCCGATCTTAGACTGGGAATGAACTCGTAT
GCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGAATAATGCACAAG
TCGGGGATCGGCCCGGTCCCCCTCTACATGCTACCGGTCCCGCTACCACAACCCTCGATCCAGCT
GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCGCT
CAGACGATCGGAGAGGCAAAATGCGGAAGCTGGGGATCGACCCAGGCCCACCTG
Found at i:19150718 original size:25 final size:26
Alignment explanation
Indices: 19150678--19150729 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
19150668 TTGGTCCGAT
19150678 CTTAGACTATGAATGAACT-CGTATG
1 CTTAGACTATGAATGAACTCCGTATG
* *
19150703 CTTAGACTTTGGATGAACTCCGTATG
1 CTTAGACTATGAATGAACTCCGTATG
19150729 C
1 C
19150730 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (26 bp):
CTTAGACTATGAATGAACTCCGTATG
Found at i:19151000 original size:354 final size:355
Alignment explanation
Indices: 19150495--19151193 Score: 820
Period size: 354 Copynumber: 1.9 Consensus size: 355
19150485 CGGTCCCGCT
19150495 ACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 ACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * **
19150560 TAAAACGGGTGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGGAAGCTGGGGATCGACCCA
66 CAAAACGGCTGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCA
* * ** *
19150625 GTCCCACCTGCGTGCTACCGA-TCCTGCTGCCGCAACCCTTTATTTGGTCCGATCTTAGACT-AT
131 ATCCCACCTGCATGCTACCGATTCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGA-
* * * * * *
19150688 GAATGAACT-CGTATGCTTAGACTTTGG-ATGAACTCCGTATGCCTAAGTCAACCCATGACACGA
195 GAATGAACTCCATATGCTTAGAC-ATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * * * *
19150751 GTGTGCGGGCGCTCAACCGGTCGGAGAGGC-ATAATGCGTAAGTCGAGGATCAGCCCGATCCCCC
259 GTGTGCGGGCGCTCAACCGATCGGA-AAGCTAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCC
19150815 TCTGCGTGCTGTCAATCTCGCTGCCGATCTTGCC
323 -CTGCGTGCTGTCAATCTCGCTGCCGATCTTGCC
* * *
19150849 ACCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 ACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * * *
19150914 CGAAATGAGCT-TG-GGGTTGCTCAACTGGTCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCT
66 CAAAACG-GCTGTGCGGG-CGCTCAACCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGACC
* * *
19150977 CAATCCTC-TCTGCATGGTACCGATCCTGCTGTTGGTCCTGCTGCCGCAACCCTCGGTCTGGTCC
129 CAATCC-CACCTGCATGCTACCGA---------T--TCCTGCTGCCGCAACCCTCGATCTGGTCC
19151041 GATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
182 GATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
** * *
19151106 CCCACGAAACGAGTGTGCGGGCGCTCAGTCGATCGGAAAGCTAGAATGTGCAAGCCGGGGATCAG
247 CCCACGAAACGAGTGTGCGGGCGCTCAACCGATCGGAAAGCTAGAATGCGCAAGCCGAGGATCAG
* *
19151171 CCCGCTCCCCCCTGCGTGTTGTC
312 CCCGATCCCCCCTGCGTGCTGTC
19151194 GATCCTACTG
Statistics
Matches: 286, Mismatches: 40, Indels: 26
0.81 0.11 0.07
Matches are distributed among these distances:
353 3 0.01
354 123 0.43
355 3 0.01
366 62 0.22
367 95 0.33
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
ACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CAAAACGGCTGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCA
ATCCCACCTGCATGCTACCGATTCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGAG
AATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGT
GTGCGGGCGCTCAACCGATCGGAAAGCTAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTG
CGTGCTGTCAATCTCGCTGCCGATCTTGCC
Found at i:19151083 original size:26 final size:26
Alignment explanation
Indices: 19151044--19151096 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19151034 CTGGTCCGAT
*
19151044 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATAAACTCCATATG
*
19151070 CTTAGACATG-GAATAAACTCCGTATG
1 CTTAGAC-TGAGAATAAACTCCATATG
19151096 C
1 C
19151097 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCATATG
Found at i:19151586 original size:26 final size:26
Alignment explanation
Indices: 19151557--19151609 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19151547 CCGGTCCCAT
19151557 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
19151583 CTTAGACATGGAATTAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19151609 C
1 C
19151610 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19156236 original size:26 final size:26
Alignment explanation
Indices: 19156200--19156252 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19156190 CTGGTACAAT
* * *
19156200 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCATATG
*
19156226 CTTAGACTGGGGATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
19156252 C
1 C
19156253 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:19156433 original size:26 final size:26
Alignment explanation
Indices: 19156395--19156447 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19156385 CCGATTCGAT
*
19156395 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19156421 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19156447 C
1 C
19156448 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19156818 original size:159 final size:160
Alignment explanation
Indices: 19156420--19156839 Score: 456
Period size: 160 Copynumber: 2.6 Consensus size: 160
19156410 AACTCTGTAT
* * *
19156420 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
19156485 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCTCGGTCCCCTCCTGCTTGCTGTCGATC
66 CTGGTCGGAGAGGCAGAATACACAAGTCGGGGATCGACTCGATCCCCTCCTACGTGCTCTCGATC
* ** * * * *
19156550 CTGCTACTGCAACCCTTCGATCTGGTTCGA
131 CCGCTACCACAACCCTTAGATCCGGCTAGA
* * * * *
19156580 TCTTAGAC-TGGGAATTG-ACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTG
1 GCTTAGACAT-GGAA-TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * *
19156643 AGCTGGCCAGAGAGGCATAATACGCAAGTCGGGGATCGACTCGATCCCCTTCTACGTGCTACT-G
64 AGCTGGTCGGAGAGGCAGAATACACAAGTCGGGGATCGACTCGATCCCCTCCTACGTGCT-CTCG
* * *
19156707 GTCCCGCTGCCACAACCCTTAG-TCCGGCTAGG
128 ATCCCGCTACCACAACCCTTAGATCCGGCTAGA
19156739 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCA
* * *
19156803 GTTGGTCGGATAGGCAGAATGCACAAG-CTGGGGATCG
65 GCTGGTCGGAGAGGCAGAATACACAAGTC-GGGGATCG
19156840 GTTTGGTCCC
Statistics
Matches: 212, Mismatches: 41, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
158 4 0.02
159 87 0.41
160 118 0.56
161 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CTGGTCGGAGAGGCAGAATACACAAGTCGGGGATCGACTCGATCCCCTCCTACGTGCTCTCGATC
CCGCTACCACAACCCTTAGATCCGGCTAGA
Found at i:19157315 original size:26 final size:26
Alignment explanation
Indices: 19157264--19157316 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19157254 CTGGTTTGAT
**
19157264 CTTAGACTGGGAATAAACTCTTTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19157290 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
19157316 C
1 C
19157317 CTAAACCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19157329 original size:184 final size:189
Alignment explanation
Indices: 19157105--19157579 Score: 516
Period size: 197 Copynumber: 2.5 Consensus size: 189
19157095 TTCGATTGGG
* * * *
19157105 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAG
* * *
19157170 CCGGCCGGAGAGGCAGAATGCGCGAGAT-GGGGATCGG-CTCGATCC-CCCCTGCGTGCTATCAA
65 CCGGCCGGAGAGGCAGAATGCGCAAG-TCGGGGACCGGCCT-GATCCTCCCCTGCGCGCTATCAA
* * ** **
19157232 TCC-TGC-TAC-C-G-CAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATAAACTCTTTAT
128 TCCTTGCGTACGCTGACAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATAAACTCCGTAT
* * *
19157289 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAG
* ** * * *
19157354 CCGACTAGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCTGGTCCTCCCCTGCGCGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCTGATCCTCCCCTGCGCGCTATCAATC
* *
19157419 CTATTGCTGGTCCTGCTGTCACAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGT
130 C--TTGC--GTAC-GCTG--ACAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATAAACTCCGT
19157484 AT
188 AT
* *
19157486 GCTTAGACATGGAATTAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGCTCAG
* * * *
19157551 TCGGCCGGAGAGGTAGAACGCGTAAGTCG
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCG
19157580 AGGATTGACC
Statistics
Matches: 238, Mismatches: 37, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
183 1 0.00
184 91 0.38
185 19 0.08
188 3 0.01
191 2 0.01
193 1 0.00
194 1 0.00
196 1 0.00
197 119 0.50
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (189 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCTGATCCTCCCCTGCGCGCTATCAATCC
TTGCGTACGCTGACAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATAAACTCCGTAT
Found at i:19157490 original size:26 final size:26
Alignment explanation
Indices: 19157461--19157513 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19157451 CTAGTCCGAT
*
19157461 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
19157487 CTTAGACATGGAATTAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
19157513 C
1 C
19157514 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:19157617 original size:197 final size:197
Alignment explanation
Indices: 19157232--19157676 Score: 541
Period size: 197 Copynumber: 2.3 Consensus size: 197
19157222 GTGCTATCAA
* * * ** * **
19157232 TCCTGCTACCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATAAACTCTTTATGCTTAGAC
1 TCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
19157297 ATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACTAG
66 ATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGCGAGCGCTCAACCGACCAG
* * * * * * * ** *
19157362 AGAGGCAGAATGCGCAAGTCGGGGACCGGCCTGGTCCTCCCCTGCGCGCTGTCGATCCTATTGCT
131 AGAGGCAGAACGCGCAAGTCGAGGACCGACCCGATCCTCCCCTACACGCTACCGATCCTACTGCT
19157427 GG
196 GG
* *
19157429 TCCTGCTGTCACAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * ** * *
19157494 ATGGAATTAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGGCCGG
66 ATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGCGAGCGCTCAACCGACCAG
* * ** * *
19157559 AGAGGTAGAACGCGTAAGTCGAGGATTGACCCGATCC-CTCCCTACATGCTACCGATCCTGCTGC
131 AGAGGCAGAACGCGCAAGTCGAGGACCGACCCGATCCTC-CCCTACACGCTACCGATCCTACTGC
19157623 TGG
195 TGG
*
19157626 TCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGGCTGGGAATGAACT
1 TCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACT
19157677 TTGTATGCCT
Statistics
Matches: 208, Mismatches: 39, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
196 1 0.00
197 207 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (197 bp):
TCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGCGAGCGCTCAACCGACCAG
AGAGGCAGAACGCGCAAGTCGAGGACCGACCCGATCCTCCCCTACACGCTACCGATCCTACTGCT
GG
Found at i:19158733 original size:26 final size:26
Alignment explanation
Indices: 19158695--19158747 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19158685 GGCTCAAACT
19158695 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19158721 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19158747 C
1 C
19158748 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19159022 original size:159 final size:159
Alignment explanation
Indices: 19158720--19159143 Score: 388
Period size: 159 Copynumber: 2.7 Consensus size: 159
19158710 AACTCCGTAT
** ** * * *
19158720 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACAAGCGCGCAGGCGCTCAG
* * *
19158785 CCGGTCGGAGAGGCAGAATGCGCAAGTAAGGGATCGGCCCGATCCACCCCTGCGTGCTGCCGATC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCAAGGGATCGGCCCGATCCACCCCTGCGTGCTACCGATC
* *
19158850 CTGCTACCGCAACCCTTGGTCCAGTCT-GA
131 CTGCTACCACAACCCTCGGTCCAGT-TGGA
* * * * *
19158879 TCTTAGAC-TGGGAATGAACTCCGTATGCAAAAGTCAACCCACAAAACAAGCGCGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACAAGCGCGCAGGCGCTCA
* * * * ** * * *
19158943 GCCGGTCGAAGAGGCATAATGTGCAAGCCAGGGATCGGCTCGATCCTTCTCTGCGTGCTACTGGT
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCAAGGGATCGGCCCGATCCACCCCTGCGTGCTACCGAT
* * *
19159008 -CTCGCTGCCACAACCCTCGGTCTAGTTGGG
130 CCT-GCTACCACAACCCTCGGTCCAGTTGGA
* * ** * ** ** * *
19159038 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACAAGCGCGCAGGCGCTCAG
* * * *
19159103 TCGGCCGGAGAGGCAGAATGCGCAAGTC-AGGGATCGACCCG
66 CCGGTCGAAGAGGCAGAATGCGCAAG-CAAGGGATCGGCCCG
19159144 GTCCTCCCTA
Statistics
Matches: 210, Mismatches: 50, Indels: 10
0.78 0.19 0.04
Matches are distributed among these distances:
158 4 0.02
159 204 0.97
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACAAGCGCGCAGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGCAAGGGATCGGCCCGATCCACCCCTGCGTGCTACCGATC
CTGCTACCACAACCCTCGGTCCAGTTGGA
Found at i:19159238 original size:26 final size:26
Alignment explanation
Indices: 19159197--19159249 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19159187 TCGGTCCGAT
*
19159197 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
19159223 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19159249 C
1 C
19159250 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19159980 original size:159 final size:158
Alignment explanation
Indices: 19159589--19160015 Score: 403
Period size: 159 Copynumber: 2.7 Consensus size: 158
19159579 AACTCTGTAT
* * * *
19159589 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGTTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * **
19159654 CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATC-AGCCTGGTCCCTCCTGCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGA-CCCGGTCCCCCCTACGTGCTACCGATC
** ** ***
19159718 TTGCTGCTGCAACCCTCGATCTGGTCTAA
130 CCGCTGCCACAACCCTCGATCTCAACTAA
* * * * * *
19159747 TCTT--ATACTGGGAATGAACTCCGTATGCCCAAGTCAACCCATAAAATGAGCGTGCGGGCACTG
1 GCTTAGATA-T-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTC
** * * * *
19159810 AGCTAGTCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTATGTGCTACCGG
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCC-CTACGTGCTACCGA
* **
19159875 TCCCGCTGCCACAACCCTCGGT-TCAACTGGG
128 TCCCGCTGCCACAACCCTCGATCTCAACT-AA
* * * *
19159906 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
19159971 CCGGCCGGAGATGTAGAATGAGCAAGCCGGGGATCGGCCCGGTCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCC
19160016 TCTCTGCGTG
Statistics
Matches: 210, Mismatches: 52, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
156 2 0.01
157 1 0.00
158 92 0.44
159 111 0.53
160 1 0.00
161 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCC
CGCTGCCACAACCCTCGATCTCAACTAA
Found at i:19160104 original size:26 final size:26
Alignment explanation
Indices: 19160065--19160117 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19160055 CCGATCTGAT
**
19160065 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTAAGGATGAACTCCCTATG
*
19160091 CTTAGACTAAGGATGAACTCCGTATG
1 CTTAGACTAAGGATGAACTCCCTATG
19160117 C
1 C
19160118 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGGATGAACTCCCTATG
Found at i:19160836 original size:26 final size:26
Alignment explanation
Indices: 19160798--19160850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19160788 GGCTCAAAAT
**
19160798 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
19160824 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
19160850 C
1 C
19160851 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:19167218 original size:26 final size:26
Alignment explanation
Indices: 19167177--19167229 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19167167 CCGGTCTGAT
19167177 CTTAGACTGGGAATGAACGT-CGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
19167203 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
19167229 C
1 C
19167230 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19167597 original size:26 final size:25
Alignment explanation
Indices: 19167558--19167609 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19167548 CTGGTCCGAT
19167558 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
19167583 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
19167609 C
1 C
19167610 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:19167882 original size:158 final size:158
Alignment explanation
Indices: 19167582--19167925 Score: 394
Period size: 158 Copynumber: 2.2 Consensus size: 158
19167572 AACTCCATAT
*
19167582 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCACTCAG
** * ** * * *
19167647 CTGGCCGGAGAGGCATAATGCGTAAGTTAGGGATCGACTCGGTCCCCTCTACGTGCTGTCGGTCC
66 CCAGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCTCTACGTGCTGTCGATCC
*
19167712 CGCTACAACAACCCTCGATCCGG-CTGGG
131 CGCTACAACAACCCTCGATCCGGTCT-GA
* * * *
19167740 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCC-AACCAACGAAACG-GACGTGTGGGCCCTT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACC-ACGAAACGAG-CGTGCGGGCACTC
* *
19167803 AGCCAGCCGGAGAGGCAGAATGC-TCAAGCCGGGGATCGGCCCGATCCCC-CTTACGTGCTGTCG
64 AGCCAGCCGGAGAGGCAGAATGCGT-AAGCCAGGGATCGACCCGATCCCCTC-TACGTGCTGTCG
* * ** *
19167866 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGA
127 ATCCCGCTACAACAACCCTCGATCCGGTCTGA
*
19167898 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
19167926 TTAGACTTGA
Statistics
Matches: 157, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
157 8 0.05
158 147 0.94
159 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCACTCAG
CCAGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCTCTACGTGCTGTCGATCC
CGCTACAACAACCCTCGATCCGGTCTGA
Found at i:19167928 original size:26 final size:26
Alignment explanation
Indices: 19167899--19167951 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19167889 CCGGTCTGAT
19167899 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
*
19167925 CTTAGACTTGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
19167951 C
1 C
19167952 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:19171952 original size:158 final size:158
Alignment explanation
Indices: 19171609--19171952 Score: 358
Period size: 158 Copynumber: 2.2 Consensus size: 158
19171599 AACTCCATAT
*
19171609 GCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * *
19171673 ACCAGTCGGAGAGGCAAATGCACAAGCCGGGGATCGACCCGATCCCTCTCTGCATGCTATCAGTC
65 ACCAGCCGGAGAGGCAAATGCACAAGCCGGGGATCGACCCGATCCCTCTCTACATGCTACCAATC
* * *
19171738 CCGTTGCAACAACCCTCAGTTTGGCTGGG
130 CCGCTGCAACAACCCTCAGTCTGGCTGGA
* * * *
19171767 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * * * * * *
19171832 CCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCTGGTCCAC-C-CTACGTGCTGCCAAT
66 CCAGCCGGAGAGGCA-AATGCACAAGCCGGGGATCGACCCGATCC-CTCTCTACATGCTACCAAT
* ***
19171895 CCTGCTGTTGCAACCCTC-GATCTGGTCT-GA
129 CCCGCTGCAACAACCCTCAG-TCTGG-CTGGA
*
19171925 TCTTAGAC-TAGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTTCGTATGC
19171953 TTAGATTGGG
Statistics
Matches: 152, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 121 0.80
159 28 0.18
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCAGCCGGAGAGGCAAATGCACAAGCCGGGGATCGACCCGATCCCTCTCTACATGCTACCAATCC
CGCTGCAACAACCCTCAGTCTGGCTGGA
Found at i:19172125 original size:26 final size:26
Alignment explanation
Indices: 19172096--19172151 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
19172086 CCGGTCCGAT
19172096 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
19172122 CTTAGACATGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19172148 CTTA
1 CTTA
19172152 AGCCAACGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19173300 original size:26 final size:26
Alignment explanation
Indices: 19173256--19173308 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19173246 CCAGTCTGAT
*
19173256 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19173282 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
19173308 C
1 C
19173309 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19174020 original size:26 final size:26
Alignment explanation
Indices: 19173980--19174032 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19173970 GGCTCAAACT
*
19173980 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
19174006 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
19174032 C
1 C
19174033 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:19174340 original size:26 final size:26
Alignment explanation
Indices: 19174311--19174363 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19174301 CCGGTCTAAT
*
19174311 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19174337 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19174363 C
1 C
19174364 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19176000 original size:316 final size:317
Alignment explanation
Indices: 19175425--19176124 Score: 890
Period size: 316 Copynumber: 2.2 Consensus size: 317
19175415 AATTTCATAT
* * * * *
19175425 GCTTAGACATGGAATGAACCCCGTATG-CTAAAGCCAACCCACGAAATGAACGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACCCAAGAAACGAGCATGCGGGTGCTCA
* * ** * * * *
19175489 GTCGACCGAAAAGGTAGAATGCGCAAGCCGGTGATCGGCCCGGTCCCCCTTGCGTGATGTCGATC
65 GCCAACCGAAAACATAGAATGCGCAAGCCGGTGACCAGCCCGGTCCCCCCTACGTGATGTCGATC
* * * *
19175554 CTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCA
130 CTACTGTCGCAACCCTCGATCCGGTACGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCA
* * * *
19175619 ATCCACGAAATGAGTGTGCGGGCATTGAACCGACCGGAGAGGCATAATGCGCAAGCTGAGGATCG
195 ACCCACGAAATGAGCGTGCGGGCACTGAACCGACCGGAGAGGCATAATGCGCAAGCAGAGGATCG
** * * *
19175684 GTTC-GATCCTCCTCTGCCTGCTGTCAGTCTCGCTGCCACAACCCTCGATCCGGCTGGG
260 GCCCAG-TCCCCCTCTGACTGCTGTCAGTCCCGCTGCCACAACCCTCGATCCGGCTGGG
* *
19175742 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCATGCGGGTGCTCAG
* * * *
19175807 CCAATCGAAAACATAGAATGTGCAAG-CGAG-GACCAGTCCGGTCCCCCCTACGTGCTGTCGATC
66 CCAACCGAAAACATAGAATGCGCAAGCCG-GTGACCAGCCCGGTCCCCCCTACGTGATGTCGATC
* * *
19175870 CTACTGTCGCAACCCTCGATCCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
130 CTACTGTCGCAACCCTCGATCCGGTACGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCA
* * * *
19175935 ACCCATGAAATGAGCGTTCGGGCACTGAGCC-AGCTGGAGAGGCATAATGCGCAAGTCAG-GGAT
195 ACCCACGAAATGAGCGTGCGGGCACTGAACCGA-CCGGAGAGGCATAATGCGCAAG-CAGAGGAT
* * * * *
19175998 CGGCCCAGTCCCCCTCTGAGTGCTTTCGGTCCCGCTGCCACAACCTTCGGTCCGGCTGGG
258 CGGCCCAGTCCCCCTCTGACTGCTGTCAGTCCCGCTGCCACAACCCTCGATCCGGCTGGG
* * *
19176058 GCTTAGACATGGAATGAAATCCTTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCATGCGGGTGCTCAG
19176123 CC
66 CC
19176125 GACCTGAGAG
Statistics
Matches: 329, Mismatches: 49, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
315 1 0.00
316 247 0.75
317 79 0.24
318 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCATGCGGGTGCTCAG
CCAACCGAAAACATAGAATGCGCAAGCCGGTGACCAGCCCGGTCCCCCCTACGTGATGTCGATCC
TACTGTCGCAACCCTCGATCCGGTACGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
CCCACGAAATGAGCGTGCGGGCACTGAACCGACCGGAGAGGCATAATGCGCAAGCAGAGGATCGG
CCCAGTCCCCCTCTGACTGCTGTCAGTCCCGCTGCCACAACCCTCGATCCGGCTGGG
Found at i:19176194 original size:159 final size:157
Alignment explanation
Indices: 19175425--19176194 Score: 590
Period size: 159 Copynumber: 4.9 Consensus size: 157
19175415 AATTTCATAT
* * * *
19175425 GCTTAGACATGGAATGAACCCCGTATG-CTAAAGCCAACCCACGAAATGAACGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCA
* * * * * *
19175489 GTCGACCGAAAAGGTAGAATGCGCAAGCCGGTGATCGGCCCGGTCCCCCTTGCGTGATGTCGATC
65 GCCGACCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATC
* * * * **
19175554 CTGCTGTCGCAACCCTCGGTCTGGTCCGA
129 CTGCTGCCACAACCCTCGATCCGGTAGGA
* * * * * * ** *
19175583 TCTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAATCCACGAAATGAGTGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCA
* * * * ** * *
19175647 ACCGACCGGAGAGGCATAATGCGCAAGCTGAGGATCGGTTCGATCCTCCTCTGCCTGCTGTC-AG
65 GCCGACC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCT-TGCGTGCTGTCGA-
*
19175711 T-CTCGCTGCCACAACCCTCGATCCGGCT-GGG
127 TCCT-GCTGCCACAACCCTCGATCCGG-TAGGA
* * *
19175742 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAG
* * ** * * * * * * * *
19175807 CCAATCGA-AAACATAGAATGTGCAAG-CGAGGACCAGTCCGGTCCCCCCTACGTGCTGTCGATC
66 CCGACCGAGAGGC--AGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATC
* * * *
19175870 CTACTGTCGCAACCCTCGATCCGGTATGA
129 CTGCTGCCACAACCCTCGATCCGGTAGGA
* * * * * *
19175899 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCA
* * * * * *
19175963 GCC-AGCTGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCC-AGTCCCCCTCTGAGTGCTTTCG
65 GCCGA-C-CGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCT-TGCGTGCTGTCG
* * * * *
19176026 GTCCCGCTGCCACAACCTTCGGTCCGGCT-GGG
126 ATCCTGCTGCCACAACCCTCGATCCGG-TAGGA
* * * * * *
19176058 GCTTAGACATGGAATGAAATCCTTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAG
* *
19176123 CCGACCTGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTGCGTGTTGTCGATC
66 CCGACC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTTGCGTGCTGTCGATC
*
19176188 TTGCTGC
129 CTGCTGC
19176195 TGGTCCTGCT
Statistics
Matches: 465, Mismatches: 121, Indels: 51
0.73 0.19 0.08
Matches are distributed among these distances:
156 3 0.01
157 99 0.21
158 123 0.26
159 228 0.49
160 12 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAG
CCGACCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCCGGTAGGA
Found at i:19176767 original size:26 final size:26
Alignment explanation
Indices: 19176731--19176783 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19176721 CCGGTCCGAT
*
19176731 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19176757 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19176783 C
1 C
19176784 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19176915 original size:514 final size:509
Alignment explanation
Indices: 19175743--19176834 Score: 1305
Period size: 514 Copynumber: 2.2 Consensus size: 509
19175733 CCGGCTGGGG
* * * * *
19175743 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAACGAGCATGTGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA-AAATGAGCGTGAGAGCACTCAG
* * * *** * * * * * * *
19175807 CCAATCGAAAACATAGAATGTG-CAAGCGAGGACCAG-TCCGGTCCCCCCTACGTGCTGTCGATC
65 CCAACCGGAGAGGCAGAATGCGTAAATCAAGGA-CAGATCTGGTCCTCCCTACGTGCTATCGATC
* ** * *
19175870 CTACTG-TCGCAACCCTCGATCCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
129 CTGCTGCT-GCAACCCTCGATCCGGTACAATCTTAGACTAGGAATGAACTCCGTATGACTAAGTC
* *
19175934 AACCCATGAAATGAGCGTTCGGGCACTGAGCCAGCTGGAGAGGCATAATGCGCAAGTCAGGGATC
193 AACCCATGAAATGAACGTTCGGGCACTGAGCCAGCTGGAAAGGCATAATGCGCAAGTCAGGGATC
** * * *
19175999 GGCCCAGTCCCCCTCTGAGTGCTTTCGGTCCCGCTGCCACAACCTTCGGTCCGGCTGGGGCTTAG
258 GGCCCAGTCCCCCTCTGAGTGCTGCCGGTCCCGCTGCCACAACCCTCGGCCCGACTGGGGCTTAG
* **
19176064 ACATGGAATGAAATCCTTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGTGCTCAGCCGACC
323 ACATGGAATGAAATCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGCACTCAGCCGACC
* *
19176129 TGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTGCGTGTTGTCGATCTTGCTG
388 AGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGA--TTGC-G
* * *
19176194 CTGGTCCTGCTGCCTCAAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATA
450 CTGAT-CTGC-GCCTCAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATA
* * * * *
19176256 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAATGAGCGTGCGAGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGAGAGCACTCAGC
** *
19176321 CAATGGGAGAGGCAGAATGCGTAAATCAAGGACCGATCTGGTCCTCCCTACGTGCTATCGATCCT
66 CAACCGGAGAGGCAGAATGCGTAAATCAAGGACAGATCTGGTCCTCCCTACGTGCTATCGATCCT
* * * *
19176386 GCTGCTGCAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTTCTTATGAGTAAGTCAAC
131 GCTGCTGCAACCCTCGATCCGGTACAATCTTAGACTAGGAATGAACTCCGTATGACTAAGTCAAC
* * ** * * *
19176451 CTATGAAATGAATGTTCGGGTGCTGAGCC-GGTCGGAAAGGCATAATGTGCAAGTCGGGGATCGG
196 CCATGAAATGAACGTTCGGGCACTGAGCCAGCT-GGAAAGGCATAATGCGCAAGTCAGGGATCGG
* *
19176515 CCC-GATCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCGGCCCGACTGTGGCTTAGA
260 CCCAG-TCCCCCTCTGAGTGCTGCCGGTCCCGCTGCCACAACCCTCGGCCCGACTGGGGCTTAGA
* * * * *
19176579 CATGGAATGAATTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTTAGCCGGCCA
324 CATGGAATGAAATCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGCACTCAGCCGACCA
* * * *
19176644 GAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCC-TGCGTGCTGTCGA-T-C-CT-A
389 GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGATTGCGCTGA
* * *
19176704 T-TGC-CCT-AACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATG
454 TCTGCGCCTCAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATA
* * * *
19176757 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACGCACAAAATGAGCGTGAGGGCACTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGAGAGCACTCAG
19176821 CCAACCGGAGAGGC
65 CCAACCGGAGAGGC
19176835 GTAATGTGTA
Statistics
Matches: 495, Mismatches: 77, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
500 1 0.00
501 106 0.21
502 3 0.01
504 3 0.01
506 1 0.00
507 2 0.00
509 1 0.00
510 1 0.00
513 88 0.18
514 288 0.58
515 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (509 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGAGAGCACTCAGC
CAACCGGAGAGGCAGAATGCGTAAATCAAGGACAGATCTGGTCCTCCCTACGTGCTATCGATCCT
GCTGCTGCAACCCTCGATCCGGTACAATCTTAGACTAGGAATGAACTCCGTATGACTAAGTCAAC
CCATGAAATGAACGTTCGGGCACTGAGCCAGCTGGAAAGGCATAATGCGCAAGTCAGGGATCGGC
CCAGTCCCCCTCTGAGTGCTGCCGGTCCCGCTGCCACAACCCTCGGCCCGACTGGGGCTTAGACA
TGGAATGAAATCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGCACTCAGCCGACCAGA
GAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGATTGCGCTGATC
TGCGCCTCAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATA
Found at i:19177039 original size:514 final size:508
Alignment explanation
Indices: 19175743--19177039 Score: 1241
Period size: 514 Copynumber: 2.5 Consensus size: 508
19175733 CCGGCTGGGG
* * * * *
19175743 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAACGAGCATGTGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA-AAATGAGCGTGAGAGCACTCAG
* * * *** * * * * * * *
19175807 CCAATCGAAAACATAGAATGTG-CAAGCGAGGACCAG-TCCGGTCCCCCCTACGTGCTGTCGATC
65 CCAACCGGAGAGGCAGAATGCGTAAATCAAGGA-CAGATCTGGTCCTCCCTACGTGCTATCGATC
* ** * *
19175870 CTACTG-TCGCAACCCTCGATCCGGTA-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
129 CTGCTGCT-GCAACCCTCGATCCGG-ACCAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * *
19175933 CAACCCATGAAATGAGCGTTCGGGCACTGAGCCAGCTGGAGAGGCATAATGCGCAAGTC-AGGGA
192 CAACCCATGAAATGAGCGTTCGGGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGTCGA-GGA
** * * *
19175997 TCGGCCCAGTCCCCCTCTGAGTGCTTTCGGTCCCGCTGCCACAACCTTCGGTCCGGCTGGGGCTT
256 TCGGCCCA-TCCCCCTCTGAGTGCTGCCGGTCCCGCTGCCACAACCCTCGGCCCGACTGGGGCTT
* **
19176062 AGACATGGAATGAAATCCTTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGTGCTCAGCCGA
320 AGACATGGAATGAAATCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGCACTCAGCCGA
* *
19176127 CCTGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTGCGTGTTGTCGATCTTGC
385 CCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGA--TTGC
* * *
19176192 TGCTGGTCCTGCTGCCTCAAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATA
448 -GCTGAT-CTGC-GCCTCAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATA
* * * * *
19176256 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAATGAGCGTGCGAGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGAGAGCACTCAGC
** *
19176321 CAATGGGAGAGGCAGAATGCGTAAATCAAGGACCGATCTGGTCCTCCCTACGTGCTATCGATCCT
66 CAACCGGAGAGGCAGAATGCGTAAATCAAGGACAGATCTGGTCCTCCCTACGTGCTATCGATCCT
* * * * **
19176386 GCTGCTGCAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTTCTTATGAGTAAGTCAAC
131 GCTGCTGCAACCCTCGATCCGGACCAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
* ** * * * * *
19176451 CTATGAAATGAATGTTCGGGTGCTGAGCCGGTCGGAA-AGGCATAATGTGCAAGTCGGGGATCGG
196 CCATGAAATGAGCGTTCGGGCGCTGAGCCAG-CCGAAGAGGCATAATGCGCAAGTCGAGGATCGG
* *
19176515 CCCGATCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCGGCCCGACTGTGGCTTAGAC
260 CCC-ATCCCCCTCTGAGTGCTGCCGGTCCCGCTGCCACAACCCTCGGCCCGACTGGGGCTTAGAC
* * * * *
19176580 ATGGAATGAATTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTTAGCCGGCCAG
324 ATGGAATGAAATCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGCACTCAGCCGACCAG
* * * *
19176645 AGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCC-TGCGTGCTGTCGA-T-C-CT-AT
389 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGATTGCGCTGAT
* * *
19176705 -TGC-CCT-AACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATG
454 CTGCGCCTCAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATA
* * * *
19176757 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACGCACAAAATGAGCGTGAGGGCACTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGAGAGCACTCAG
* * ** * * * *
19176821 CCAACCGGAGAGGC-GTAATGTGT-AAGCTGGGGATCAGCTC-GGTCCCTCTCTTCGTGCTGTCG
65 CCAACCGGAGAGGCAG-AATGCGTAAATC-AAGGA-CAGATCTGGT-CCTCCCTACGTGCTATCG
* * * * *
19176883 ATCCCGCTACCAGTCCTGTTGCCACAACCCTCGGTCC-GACTAGGGCTTCGAC-ATGGAATGAAC
126 AT--C-CT----G--CTGCTG---CAACCCTCGATCCGGACCA-AGCTTAGACTA-GGAATGAAC
* * * * * * *
19176946 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGTAGAAT
177 TCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTGAGCCAGCCGAAGAGGCATAAT
* *
19177011 GCGTAAGTCGAGGATCAGCCCTATCCCCC
242 GCGCAAGTCGAGGATCGGCCC-ATCCCCC
19177040 CTGCATGCTG
Statistics
Matches: 640, Mismatches: 116, Indels: 55
0.79 0.14 0.07
Matches are distributed among these distances:
500 5 0.01
501 118 0.18
502 24 0.04
504 4 0.01
505 2 0.00
506 1 0.00
507 2 0.00
509 2 0.00
510 1 0.00
511 5 0.01
513 93 0.15
514 378 0.59
515 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (508 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGAGAGCACTCAGC
CAACCGGAGAGGCAGAATGCGTAAATCAAGGACAGATCTGGTCCTCCCTACGTGCTATCGATCCT
GCTGCTGCAACCCTCGATCCGGACCAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAATGAGCGTTCGGGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGGC
CCATCCCCCTCTGAGTGCTGCCGGTCCCGCTGCCACAACCCTCGGCCCGACTGGGGCTTAGACAT
GGAATGAAATCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGCACTCAGCCGACCAGAG
AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGATTGCGCTGATCT
GCGCCTCAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATA
Found at i:19177127 original size:26 final size:26
Alignment explanation
Indices: 19177098--19177150 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19177088 CCAGTCTGAT
19177098 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
19177124 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
19177150 C
1 C
19177151 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:19177624 original size:158 final size:157
Alignment explanation
Indices: 19177124--19177624 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 157
19177114 ACTCTGTATG
*
19177124 CTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAACAAGCG-CACCGGTGCTCA
1 CTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACAAGCGTC-CGGGTGCTCA
* * * * * *
19177187 GTCGGTCGGAGAGGTAGAAT-GCATAAGCCGGGGATCGACCCGATCCCTCCTACGTACTGTCGAT
64 GTCGGTCGAAGAGGCAGAATGGC--AAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
*
19177251 CCTGCTGTCGCAACCCTCGGTCTGGCTTGAT
127 CCTGCTGTCGCAACCCTCGGTCTGGCTCGAT
* * * * * *
19177282 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACAAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGTGCTCAG
* * * * * * * * *
19177346 TCGATCGAAGAGGCATAATGCACAAGCCAGGGCTCGACCCGGTCTGCCTCTGCGTGCTGCCGGTC
65 TCGGTCGAAGAGGCAGAATG-GCAAGCCGGGGATCGACCCGGTC-CCCCCTGCGTGCTGTCGATC
* * * * **
19177411 CCGCTGCCACAACCCTCGGTCTGGCTGGGG
128 CTGCTGTCGCAACCCTCGGTCTGGCTCGAT
** *
19177441 CTTAGACATGGAATGAACTTC-TATGCCTAAGCCAACCCATGAAACGGGTGTCCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGTGCTCAGT
* **
19177505 CGGCCGAAGAGGCAGAATAGGCAAGCCGGGGATCGATGCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGGTCGAAGAGGCAGAAT-GGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
* *
19177570 ACTGTCGCAACCCTCGGTCTGG-TCCAAT
130 GCTGTCGCAACCCTCGGTCTGGCT-CGAT
*
19177598 CTTAGAC-TGGGAATGAACTTCATATGC
1 CTTAGACAT-GGAATGAACTTCGTATGC
19177625 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 57, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 56 0.20
158 158 0.57
159 57 0.21
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGTGCTCAGT
CGGTCGAAGAGGCAGAATGGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGTCGCAACCCTCGGTCTGGCTCGAT
Found at i:19177649 original size:26 final size:26
Alignment explanation
Indices: 19177598--19177650 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19177588 CTGGTCCAAT
*
19177598 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19177624 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19177650 C
1 C
19177651 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19184685 original size:26 final size:27
Alignment explanation
Indices: 19184634--19184691 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
19184624 CCAGTCCGAT
* *
19184634 CTTAGACTGGAAATGAACTTCGTATG-
1 CTTAGACTGGAAATGAACTCCATATGC
19184660 CTTAGACATGG-AATGAACTCCATATGC
1 CTTAGAC-TGGAAATGAACTCCATATGC
19184687 CTTAG
1 CTTAG
19184692 CCAATCCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGAAATGAACTCCATATGC
Found at i:19185730 original size:159 final size:158
Alignment explanation
Indices: 19185382--19185844 Score: 434
Period size: 159 Copynumber: 2.9 Consensus size: 158
19185372 AACTCCGTAT
* * * *
19185382 GCTTAGAAATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGCGAGCTCAG
* * * *
19185447 CTGACCGGAGAGGCAGAATGCAGAAGCCGAGGATCGGCCTAATCCCCCCTGTGTGCTGTCGATCT
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCTAATCCCCCCTGCGTGCTGTCGATCT
* * * *
19185512 TGCTGCCACAACCTTCAGTCCGGTTCGA
131 CGCTGCCACAACCCTCAGTCCAGCTCGA
* *
19185540 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT-T-CGAGCATT
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGCGAGC--T
* ** * * ** *
19185602 GAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCTGGTCCCCCTTTGCGTGCTGTCG
63 CAGCCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCTAATCCCCC-CTGCGTGCTGTCG
* * * *
19185667 GTCTCGCTGCCACAACCCTCAGTCTAGCTGGG
127 ATCTCGCTGCCACAACCCTCAGTCCAGCTCGA
** * * *
19185699 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAG-GTGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTG-TGCGAGCTCA
* * * * ** * * * **
19185763 GCTGGCCGGAAAGGCAGAATACGTAAGTC-AGGGATCGGCCTGATCCCCCCTGCGTGCTACCGAT
65 GCCGACCGGAGAGGCAGAATGCACAAGCCGA-GGATCAGCCTAATCCCCCCTGCGTGCTGTCGAT
*
19185827 C-CTGCTGCCGCAACCCTC
129 CTC-GCTGCCACAACCCTC
19185845 GATCCAATCC
Statistics
Matches: 245, Mismatches: 50, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 3 0.01
158 115 0.47
159 120 0.49
160 1 0.00
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGCGAGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCTAATCCCCCCTGCGTGCTGTCGATCT
CGCTGCCACAACCCTCAGTCCAGCTCGA
Found at i:19186262 original size:26 final size:26
Alignment explanation
Indices: 19186224--19186276 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19186214 CCGATCCGAT
19186224 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19186250 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
19186276 C
1 C
19186277 CTAAGCAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19186422 original size:184 final size:183
Alignment explanation
Indices: 19186066--19186434 Score: 438
Period size: 182 Copynumber: 2.0 Consensus size: 183
19186056 TCTGGCTGGG
* * * * *
19186066 GCTTAGACATGGAATGAACTCCGTCTACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGTCAACCCACAAAACAAGCATGCGGGCACTCAA
* * * * * *
19186131 CCGGCTGGAAAGGCAGAATGCGCAAGTCAAGGATCGGCCCGGTCCCCCTGCATGCTGTCGATCCT
66 CCGGCCGGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCTACATGCTATCGATCCT
* *
19186196 ACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT-TCGTAT
131 ACTGCCGCAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTCT-GTAT
* * *
19186249 GCTTAGACATGGAATGAACTTCGTATGCCTAAG-CAACCCACAAAACAAGCATGTGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGTCAACCCACAAAACAAGCATGCGGGCACTCAA
* * * * *
19186313 CTGGCCGGATAGGTAGAATGCGTAAGCCAGGGATCGACCCGATCCTCTCCTACGA-GCTATCGAT
66 CCGGCCGGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCC-C-CCTAC-ATGCTATCGAT
* * * * * *
19186377 CTTGCTGTCGTAACCCTCAGTCCGGTCTGATCATAGACTGGGAATGAACTCTGTAT
128 CCTACTGCCGCAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTCTGTAT
19186433 GC
1 GC
19186435 CTGAGTCAAG
Statistics
Matches: 155, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
182 62 0.40
183 31 0.20
184 60 0.39
185 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGTCAACCCACAAAACAAGCATGCGGGCACTCAA
CCGGCCGGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCTACATGCTATCGATCCT
ACTGCCGCAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTCTGTAT
Found at i:19186484 original size:867 final size:873
Alignment explanation
Indices: 19184925--19186819 Score: 2195
Period size: 867 Copynumber: 2.2 Consensus size: 873
19184915 CGGTCCAGTC
** * *
19184925 CCCCCCTTTGTGCTACCGATCCTACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAAT
1 CCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAAT
* * * * *
19184990 GAACTCCATATGTTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG
66 GAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTG
* * * * * * * *
19185055 CGGGCGCTCGGCCGACCTCTCTGGTCGGCCGAAGAGCCATAATGCACAAGCTGGGGATCTACCCG
131 CGGGCGCTCAGCCGACCGCACAGGCCGACAGAAGAGCCATAATGCACAAGCTGGGGATCTACCCA
** * * *
19185120 ATCCCTCTCTACATGCTGTCGATCCCGCTGTTAGTCCTGCTGCAACAACCCTCGGTTCGGCTGGG
196 ATCCCTCTCTACATGCTGTCGATCCCGCTGCCAGTCCTGCTACAACAACACTAGGTTCGGCTGGG
* *
19185185 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGACTAGAGG
261 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTACGGACTAGA-G
* * * ** * *
19185250 CTGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCTCCCCTTGCGTGCTGTTGATC
325 CCGGCCGGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCTCCCCTTGCATGCTGTCGATC
*
19185315 CTGCTACTGGTCTTACTTTCGCAACCCTCGATCCGATATGATCTTAGACTGGGAATGAACTCCGT
390 C-GCTACTGG---T-C--TCGCAACCCTCGATCCGATACGATCTTAGACTGGGAATGAACTCCGT
** * * **
19185380 ATGCTTAGAAATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTC
448 ATGCTTAGAAATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCATGTGGGCACTC
* * * ** * *
19185445 AGCTGACCGGAGAGGCAGAATGCAGAAGCCGAGGATCGGCCTAATCCCCCCTGTGTGCTGTCGAT
513 AACTGACCGGAGAGGCAGAATGCAGAAGCCGAGGATCGACCCAATCCCCCCTACGAGCTATCGAT
* *
19185510 CTTGCTGCCACAACCTTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
578 CTTGCTGCCACAACCCTCAGTCCGGTTCGATCATAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * * *
19185575 AACCCACGAAACGAGCGTTCGAGCATTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATC
643 AACCCACGAAACGAGCATGCGAGCACTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGAGGATC
* * * *
19185640 -AGCCTGGTCCCCCTTTGCGTGCTGTCGGTCTCGCTGCCACAACCCTCAGTCT-AGCTGGGGCTT
708 GA-CCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCAGTCTGA-CTGGGGCTT
* * * * *
19185703 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGCTCAG-CTG
771 AGACATGCAATGAACTACCTATGACTAAGCCAACCCACAAAACGGGCGTGCAGGCGCTCAGTC-G
* *
19185767 GCCGGAA-AGGCAGAATACGTAAGTCAGGGATCGGCCTGAT
835 GCC-GAAGAGGCAGAATACGCAAGTCAGGGATCGACC-GAT
* * * *
19185807 CCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCAATCCGATCTTAGACTAGAAAT
1 CCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAAT
*
19185872 GAGCTCCATATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTG
66 GAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTG
* * * * * * ** *
19185936 CGGGTGCTCAGCC-AGCCGGAGAGGCCGACAGGAGAGGCATAATGCATAATTTTGGGATC-AGCC
131 CGGGCGCTCAGCCGA-CCGCACAGGCCGACAGAAGAGCCATAATGCACAAGCTGGGGATCTA-CC
** * *
19185999 CAATCCC-CT-TTTATGTTCTGTCGATCTCGCTGCCAGTCCTGCTACCACAACACTAGG-TCTGG
194 CAATCCCTCTCTACATG--CTGTCGATCCCGCTGCCAGTCCTGCTACAACAACACTAGGTTC-GG
* * * *
19186061 CTGGGGCTTAGACATGGAATGAACTCCGTCTACCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
256 CTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTAC-GG-A
* * * *
19186126 CTCA-A-CCGGCTGGAAAGGCAGAATGCGCAAGTCAAGGATCGGCCCGGTC-CCCC-TGCATGCT
319 CT-AGAGCCGGCCGGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCTCCCCTTGCATGCT
* * *
19186187 GTCGAT-C-CTACT-G-C-CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGT
383 GTCGATCCGCTACTGGTCTCGCAACCCTCGATCCGATACGATCTTAGACTGGGAATGAACTCCGT
*
19186247 ATGCTTAGACATGGAATGAACT-TCGTATGCCTAAG-CAACCCACAAAACAAGCATGTGGGCACT
448 ATGCTTAGAAATGGAATGAACTCT-GTATGCCTAAGCCAACCCACAAAACAAGCATGTGGGCACT
* * * * *
19186310 CAACTGGCCGGATAGGTAGAATGC-GTAAGCC-AGGGATCGACCCGATCCTCTCCTACGAGCTAT
512 CAACTGACCGGAGAGGCAGAATGCAG-AAGCCGA-GGATCGACCCAATCC-CCCCTACGAGCTAT
* **
19186373 CGATCTTGCTGTCGTAACCCTCAGTCCGG-TCTGATCATAGACTGGGAATGAACTCTGTATGCCT
574 CGATCTTGCTGCCACAACCCTCAGTCCGGTTC-GATCATAGACTGGGAATGAACTCTGTATGCCT
* * * * * ** **
19186437 GAGTCAAGCCATGAAACGAGCATGC-AGGCGCTGAGCCGG-CTGGAGAGGCGTAATGCGTAAGTT
638 AAGTCAACCCACGAAACGAGCATGCGA-GCACTGAGCCGGTC-GGAGAGGCATAATGCACAAGCC
* *
19186500 GAGGATCGACCCGGTCCCCCTCTGCGTGTTGTCGGTCCCACTGCCACAACCCTCGGTCTGACTGG
701 GAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCAGTCTGACTGG
* * *
19186565 GGCTTAGACATGCAATGAACTACCTATGACTAAGCCAACCCATAAAACGGGCTTGCGGGCGCTCA
766 GGCTTAGACATGCAATGAACTACCTATGACTAAGCCAACCCACAAAACGGGCGTGCAGGCGCTCA
* * * * *
19186630 GTCGGCCGAAGAGGCCGAATGCGCAAGTCGGGGATCGATCGGT
831 GTCGGCCGAAGAGGCAGAATACGCAAGTCAGGGATCGACCGAT
*** * * *
19186673 CCCCCCTGCGTGCCGTCGATCCTACTGCCACAACCCTCGGTCCGATCCGATCTTGGACTGGGAAT
1 CCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAAT
** *
19186738 GAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGGCAACCCATGAAACAAGCGTG
66 GAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTG
*
19186803 CGCGCGCTCAGCCGACC
131 CGGGCGCTCAGCCGACC
19186820 ACAAAGGCAG
Statistics
Matches: 858, Mismatches: 134, Indels: 57
0.82 0.13 0.05
Matches are distributed among these distances:
865 2 0.00
866 141 0.16
867 381 0.44
868 4 0.00
870 1 0.00
875 1 0.00
876 5 0.01
878 1 0.00
879 16 0.02
880 10 0.01
881 215 0.25
882 77 0.09
883 3 0.00
884 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (873 bp):
CCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAAT
GAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTG
CGGGCGCTCAGCCGACCGCACAGGCCGACAGAAGAGCCATAATGCACAAGCTGGGGATCTACCCA
ATCCCTCTCTACATGCTGTCGATCCCGCTGCCAGTCCTGCTACAACAACACTAGGTTCGGCTGGG
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTACGGACTAGAGC
CGGCCGGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCTCCCCTTGCATGCTGTCGATCC
GCTACTGGTCTCGCAACCCTCGATCCGATACGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
AAATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCATGTGGGCACTCAACTGACC
GGAGAGGCAGAATGCAGAAGCCGAGGATCGACCCAATCCCCCCTACGAGCTATCGATCTTGCTGC
CACAACCCTCAGTCCGGTTCGATCATAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
AAACGAGCATGCGAGCACTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGAGGATCGACCCGGT
CCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGCAA
TGAACTACCTATGACTAAGCCAACCCACAAAACGGGCGTGCAGGCGCTCAGTCGGCCGAAGAGGC
AGAATACGCAAGTCAGGGATCGACCGAT
Found at i:19186573 original size:159 final size:157
Alignment explanation
Indices: 19186410--19186750 Score: 357
Period size: 159 Copynumber: 2.2 Consensus size: 157
19186400 GGTCTGATCA
* * * * *
19186410 TAGACTGGGAATGAACTCTGTATGCCTGAGTCAAGCCATGAAACGAGCATGCAGGCGCTGAGCCG
1 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCATGCAGGCGCTCAGCCG
* * * * ** *
19186475 GCTGGAGAGG-CGTAATGCGTAAGTTGAGGATCGACCCGGTCCCCCTCTGCGTGTTGTCGGTCCC
66 GCCGAAGAGGCCG-AATGCGCAAGTCGAGGATCGA-CCGGTCCCCC-CTGCGTGCCGTCGATCCC
* * *
19186539 ACTGCCACAACCCTCGGTCTGA-CTGGGGCT
128 ACTGCCACAACCCTCGGTCCGATC-CGAGCT
* * * * * * *
19186569 TAGACAT-GCAATGAACTAC-CTATGACTAAGCCAACCCATAAAACGGGCTTGCGGGCGCTCAGT
1 TAGAC-TGGGAATGAACT-CTGTATGCCTAAGCCAACCCATAAAACGAGCATGCAGGCGCTCAGC
* * *
19186632 CGGCCGAAGAGGCCGAATGCGCAAGTCGGGGATCGATCGGTCCCCCCTGCGTGCCGTCGATCCTA
64 CGGCCGAAGAGGCCGAATGCGCAAGTCGAGGATCGACCGGTCCCCCCTGCGTGCCGTCGATCCCA
*
19186697 CTGCCACAACCCTCGGTCCGATCCGATCT
129 CTGCCACAACCCTCGGTCCGATCCGAGCT
*
19186726 TGGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
19186751 TTAGACTAGG
Statistics
Matches: 146, Mismatches: 30, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 55 0.38
158 10 0.07
159 75 0.51
160 4 0.03
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCATGCAGGCGCTCAGCCG
GCCGAAGAGGCCGAATGCGCAAGTCGAGGATCGACCGGTCCCCCCTGCGTGCCGTCGATCCCACT
GCCACAACCCTCGGTCCGATCCGAGCT
Found at i:19187494 original size:26 final size:26
Alignment explanation
Indices: 19187456--19187508 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19187446 GGCTCAAAAT
19187456 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19187482 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19187508 C
1 C
19187509 CTAAGCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19187776 original size:159 final size:159
Alignment explanation
Indices: 19187491--19187984 Score: 389
Period size: 159 Copynumber: 3.1 Consensus size: 159
19187481 GCTTAGACAT
* *
19187491 GGAATGAACTCCGTATGCCTAAGCAAACCTACGAAACGAGCGTACGGGCGCTCAGCCAATCGAAG
1 GGAATGAACTCCGTATGCATAAGCAAACCCACGAAACGAGCGTACGGGCGCTCAGCCAATCGAAG
* * ** * * *
19187556 AGGCAGAATGCTCAAGCCGGGGATCGGCTCGGTCGCCCCCTACGTGCTGTCGATCCTACTGCCGC
66 AGGCAGAATGCGCAAGCCAGGGATCACCCCGGTCGCCCCCTACGTGCTGTCGATCCGACTGCCAC
19187621 AACCCTCAGTCCAGGCCAATCATAGACTG
131 AACCCTCAGTCCAGGCCAATCATAGACTG
* * * * **
19187650 GGAATGAACTCTGTATGCATAAGTC-AACCCATGAAACGAGCGTACGGGTGCTGAGCCGGTCGAA
1 GGAATGAACTCCGTATGCATAAG-CAAACCCACGAAACGAGCGTACGGGCGCTCAGCCAATCGAA
* * * * *
19187714 GAGGCATAATGCGCAAGTCAGGGATTACCCCGGTC-CCCCTCTGCGTGCTGAT-GGTCCGACTGC
65 GAGGCAGAATGCGCAAGCCAGGGATCACCCCGGTCGCCCC-CTACGTGCTG-TCGATCCGACTGC
**** *
19187777 CACAACCCTC-GATCC-GGCTGGGGCTTAGACAT-
128 CACAACCCTCAG-TCCAGGC-CAATCATAGAC-TG
* * * ** * * * ** * *
19187809 GGAATGAACTCCTTATGCCTAAGCCAACCCATAAAACGGGTGTGCGGGCGCTCAATCAGTCGGAG
1 GGAATGAACTCCGTATGCATAAGCAAACCCACGAAACGAGCGTACGGGCGCTCAGCCAATCGAAG
* * * * * * *
19187874 AGGCAGAATGTGTAAG-CTGAGGATCGA-CCCGATC-CCCCCTATGTACTGTCGATCTTG-CTGC
66 AGGCAGAATGCGCAAGCCAG-GGATC-ACCCCGGTCGCCCCCTACGTGCTGTCGATC-CGACTGC
* ** *
19187935 CACAACCCTCAATCC-GGTCTGATCTTAGACTG
128 CACAACCCTCAGTCCAGG-CCAATCATAGACTG
19187967 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
19187985 TTAGACTGGC
Statistics
Matches: 267, Mismatches: 54, Indels: 29
0.76 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 65 0.24
159 196 0.73
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCAAACCCACGAAACGAGCGTACGGGCGCTCAGCCAATCGAAG
AGGCAGAATGCGCAAGCCAGGGATCACCCCGGTCGCCCCCTACGTGCTGTCGATCCGACTGCCAC
AACCCTCAGTCCAGGCCAATCATAGACTG
Found at i:19187987 original size:26 final size:26
Alignment explanation
Indices: 19187958--19188010 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19187948 CCGGTCTGAT
19187958 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGCG-ATGAACTCCGTATG
*
19187984 CTTAGACTGGCGATGAACTCTGTATG
1 CTTAGACTGGCGATGAACTCCGTATG
19188010 C
1 C
19188011 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCGATGAACTCCGTATG
Found at i:19188367 original size:26 final size:26
Alignment explanation
Indices: 19188326--19188378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19188316 CTGATCTAAT
*
19188326 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
19188352 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19188378 C
1 C
19188379 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19188464 original size:368 final size:367
Alignment explanation
Indices: 19187776--19188486 Score: 901
Period size: 368 Copynumber: 1.9 Consensus size: 367
19187766 GGTCCGACTG
* *
19187776 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
** * * * * *** * *
19187841 AAAACGGGTGTGCGGGCGCTCAATCAGTCGGAGAGGCAGAATGTGTAAGCTGAGGATCGACCCGA
66 AAAACGGGCATGCGGGCACTCAACCACTCGGAGAGGCAGAAAGCACAAGCTGAGGACCAACCCGA
* * * * *
19187906 TCCCCCCTATGTACTGTCGATCTTGCTGCCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAA
131 TCCCCCCTATG-ACTGCCGATCCTGCTGCCACAACCCTCAATCCGATCTAATCTTAGACTAGGAA
* *
19187971 TGAACTCCGTATGCTTAGACTGGCGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCAT
195 TGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
* * * **
19188036 GAGGGCGCTCAACCAGCCTGAGGGGCTGGCCAGAAAGGCATAATGTGCAAGCCAAGGATCAGCCC
260 GAGGGCGCTCAACCAGCCAGAGAGGCTAGCCAGAAAGGCATAATGCACAAGCCAAGGATCAGCCC
*
19188101 GATCCCCCTCTGCGTGCTCCCGATCCCGCTGTCGATCCTGCGA
325 GATCCCCCTCTACGTGCTCCCGATCCCGCTGTCGATCCTGCGA
* *
19188144 CCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * *
19188209 GAAATGGGCATGCGGGCACTCAACCGACT-GGAGAGGCAGAAAGCACAAG-TCGGGGACCAACGC
66 AAAACGGGCATGCGGGCACTCAACC-ACTCGGAGAGGCAGAAAGCACAAGCT-GAGGACCAACCC
* * * ** *
19188272 GGTCCCCCCTGCATG-CTGCCGATCCTGCTGTCGCAACCCTCGGTCTGATCTAATCTTAGACTAG
129 GATCCCCCCT--ATGACTGCCGATCCTGCTGCCACAACCCTCAATCCGATCTAATCTTAGACTAG
* *
19188336 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
192 GAATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
19188401 CGTGCGGGCTC-CAAGCC-GACCAGAGAGGCTAGCCGGAGAGGCATAATGCACAAGCCGAGGATC
257 CATGAGGGCGCTCAA-CCAG-CCAGAGAGGCTAGCCAGAAAGGCATAATGCACAAGCCAAGGATC
*
19188464 AGCTCGATCCCCCTCTACGTGCT
320 AGCCCGATCCCCCTCTACGTGCT
19188487 ACCACAACCC
Statistics
Matches: 290, Mismatches: 47, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
367 5 0.02
368 280 0.97
369 2 0.01
370 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (367 bp):
CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
AAAACGGGCATGCGGGCACTCAACCACTCGGAGAGGCAGAAAGCACAAGCTGAGGACCAACCCGA
TCCCCCCTATGACTGCCGATCCTGCTGCCACAACCCTCAATCCGATCTAATCTTAGACTAGGAAT
GAACTCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATG
AGGGCGCTCAACCAGCCAGAGAGGCTAGCCAGAAAGGCATAATGCACAAGCCAAGGATCAGCCCG
ATCCCCCTCTACGTGCTCCCGATCCCGCTGTCGATCCTGCGA
Found at i:19189401 original size:26 final size:26
Alignment explanation
Indices: 19189365--19189417 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19189355 CCGGTCCGAT
*
19189365 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
19189391 CTTAGACTGGGGATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19189417 C
1 C
19189418 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19190187 original size:159 final size:157
Alignment explanation
Indices: 19189772--19190193 Score: 386
Period size: 159 Copynumber: 2.7 Consensus size: 157
19189762 CTCCGTATGC
* * * * *
19189772 TTAGACATGGAAGGAACTACGTATGCCTAAGCCAACCCATGAAACAAGCGTTCGGGC-ATTCAAC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTT-AAC
* * * * *
19189836 CGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCTAGCGTGCTGTCGATCCT
65 CG-CCGGAGAGGCAGAATGCGTAAGCCGGAGATCGACCCGATCCCCCTAGCGTGCTGCCGATCCC
* * *
19189901 GCTACCACAACCCTCGGTCCGATCTGATC
129 GCTACCACAACCCTCAGACCGATCTGATA
* * * * * * * *
19189930 TTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATCAAACGAGCGTACAGGTGCTGAGT
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTTA-A
* * ** * * * * *
19189994 CGGCCAGAGAGGCCTAATGCGCAAGTC-GAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTC
64 CCGCCGGAGAGGCAGAATGCGTAAGCCGGA-GATCGACCCGATCCCCCT-AGCGTGCTGCCGATC
*
19190058 CCGCTATCACAACCCTCAGACCGA-CTGGGA-A
127 CCGCTACCACAACCCTCAGACCGATCT--GATA
* * * *
19190089 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTTAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTTAACC
* * *
19190154 TGCCGGAGATGTAGAATGCGTAAGCCGGAGATCGGCCCGA
66 -GCCGGAGAGGCAGAATGCGTAAGCCGGAGATCGACCCGA
19190194 ACCCTCATGT
Statistics
Matches: 201, Mismatches: 53, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
157 2 0.01
158 83 0.41
159 111 0.55
160 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTTAACC
GCCGGAGAGGCAGAATGCGTAAGCCGGAGATCGACCCGATCCCCCTAGCGTGCTGCCGATCCCGC
TACCACAACCCTCAGACCGATCTGATA
Found at i:19190296 original size:26 final size:26
Alignment explanation
Indices: 19190246--19190296 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19190236 CCGGTTCGAT
**
19190246 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
19190272 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
19190297 ACCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:19190930 original size:868 final size:873
Alignment explanation
Indices: 19189222--19191190 Score: 2299
Period size: 868 Copynumber: 2.3 Consensus size: 873
19189212 ACTAGGGATA
* * ** * * * * * *
19189222 AACTCCGTATGCCTAAGTCAACTAACGAAACGAGCATGCGCGCGCTCAGCCGACC-AGAGAGGTA
1 AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAACCGACCGA-AGAGGCA
** * * * * * * * * ** **
19189286 GGATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTGCATGCTGCCAATCCTGCTGTCGCAACCCT
65 AAATGCGCAAGCCTGGGATCAACC-AGACCCTCATGCGTGCTACCAATCCTGCTACCATAACCCT
* * **
19189351 CGATCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTTTAT
129 CGGTCCGGTCCGATCTTAGACT-GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTAT
* * * **
19189416 GCCTAAGCCAACCCGTGAAACGAGCGTACGGATGCTCAGCCGGCCGGAGAGGTTGACCGAAGAGG
193 GCCTAAGTCAACCCGTGAAACGAGCGTACGAATGCTCAACCGGCCGGAGAGGCCGACCGAAGAGG
* * * * * *
19189481 CATAATGCACAAGCCGGGGATCAACCCGGTTCCTTTCTGCGAGCTACCGATCCCGCTGCCGGTCT
258 CATAATACACAAGCCGGGGATCAACCCGATCCCCTTCTACGAGCTACCGATCCCGCTGCCGGTCC
* * *
19189546 TGCTGCCACAACCCTCAGCCAGGTTGGGGGTTAGACATGGAATGAACTTCGTATCCCTAAGCCAA
323 TGCTGCCACAACCCTCAGCCAGGCTGGGGCTTAGACATAGAATGAACTTCGTATCCCTAAGCCAA
* * * *
19189611 CCCACGAAACGAGCGTACGGGTGCTCAACCGATCAAAGAGGCAGAATGCGCAAGCCGGGGATCGA
388 CCCACAAAACGAACGTACAGGCGCTCAACCGATCAAAGAGGCAGAATGCGCAAGCC--GGA-CGA
* * * *
19189676 ACCGATCCCTCCTGTGTGCTGTCGATCTTACTGCTGGCCCTGCTGCCACAACCGTTGGTCCGGTC
450 ACCGATCCCTCC---GTGCTGTCGATCCTACTGCTGGCCCTACTGCCACAACCATTGGTCCGATC
* *
19189741 TGATGTTACACTGGGAATGAACTCCGTATGCTTAGACATGGAAGGAACTACGTATGCCTAAGCCA
512 TGATCTTACACTGGGAATGAACTCCATATGCTTAGACATGGAAGGAACTACGTATGCCTAAGCCA
* **** * *
19189806 ACCCATGAAACAAGCGTTCGGGCATTCAACCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCG
577 ACCCATGAAACAAGCGTGCGGGCATTCAACCGATCGGAGAGGCAGAATAAAAAAGCTGAGGACCG
* * *
19189871 ACCCGATCCCCCTAGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGAT
642 ACCCGATCCCCCTAGCGTGATGTCGATCCTGCTACCACAACCCTCGGTCCGATCTAATCTTAGAC
* * * * *
19189936 TGGGAATGAACTCTGTATGCCTAAGTCAACCCATCAAACGAGCGTACAGGTGCTGAGTCGGCCAG
707 TGGAAATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAGCATACAGGCGCTGAGTAGGCCAG
* * * *
19190001 AGAGGCCTAATGCGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTATC
772 AGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGCGCTGCCGGTCCCGCTACC
19190066 ACAACCCTCAGACCGACTGGGAATTAGACATGGAATG
837 ACAACCCTCAGACCGACTGGGAATTAGACATGGAATG
* * * * *
19190103 AACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTTAACCTG-CCGGAGATGTA
1 AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAACC-GACCGAAGAGGCA
* * ** * * * * *
19190167 GAATGCGTAAGCC-GGAGATCGGCCCGAACCCTCATGTGTGCTACCGATCCTGCTATCATAACTC
65 AAATGCGCAAGCCTGG-GATCAACCAG-ACCCTCATGCGTGCTACCAATCCTGCTACCATAACCC
* *
19190231 TCGGTCCGGTTCGATCTTAGACTGGAAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTA
128 TCGGTCCGGTCCGATCTTAGACTGG-AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTA
* * * *
19190296 TACCTAAGTCAACCCGTGAAACGAGCGTACGAATGCTCAACCGGCGGGAGAGGCCGATCGGAGAG
192 TGCCTAAGTCAACCCGTGAAACGAGCGTACGAATGCTCAACCGGCCGGAGAGGCCGACCGAAGAG
** * * * * *
19190361 GCATAATACGTAAGCCGGGGATCAGCCTGATCCCCTTCTACG-TCTACCGATCTCGCTGTCGGTC
257 GCATAATACACAAGCCGGGGATCAACCCGATCCCCTTCTACGAGCTACCGATCCCGCTGCCGGTC
* *
19190425 CTGCTGTCACAACCCTC-GATCAGGCTGGGGCTTAGACATAGAATGAACTTCGTATCCCTAAGCC
322 CTGCTGCCACAACCCTCAG-CCAGGCTGGGGCTTAGACATAGAATGAACTTCGTATCCCTAAGCC
* * * * ** *
19190489 AACCCACAAAACGAATGTGCAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCC-GA-GGA
386 AACCCACAAAACGAACGTACAGGCGCTCAACCGATCAAAGAGGCAGAATGCGCAAGCCGGACGAA
*** * * *
19190552 CC-ATTGGTCC-TGCTGTTGATCCTGCTGCT-GTCCTACTGCCACAACCATTGGTCCGATCTGAT
451 CCGATCCCTCCGTGCTGTCGATCCTACTGCTGGCCCTACTGCCACAACCATTGGTCCGATCTGAT
* * * *
19190614 CTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
516 CTTACACTGGGAATGAACTCCATATGCTTAGACATGGAAGGAACTACGTATGCCTAAGCCAACCC
* * * * * * *
19190679 ATGAAACGAGCGTGCGGGCGTTCAATCGGTCGGAGAGGTAGAATAAAAAATC-GAGGACC-AGCT
581 ATGAAACAAGCGTGCGGGCATTCAACCGATCGGAGAGGCAGAATAAAAAAGCTGAGGACCGA-CC
* * *
19190742 CGATCCCCCTTA-CGTGATGTCGATCCTGTTACTACAACCCTCGGTCTGATCTAATCTTAGACTG
645 CGATCCCCC-TAGCGTGATGTCGATCCTGCTACCACAACCCTCGGTCCGATCTAATCTTAGACTG
* * * * *
19190806 GAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAGTAGGTCGGAG
709 GAAATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAGCATACAGGCGCTGAGTAGGCCAGAG
* * * * * * *
19190871 AGGTATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGCGTTGTCGGTCCCGCTGCCAC
774 AGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGCGCTGCCGGTCCCGCTACCAC
* *
19190936 AACCCTCAGATCGGCTGGGAATTAGACATGGAATG
839 AACCCTCAGACCGACTGGGAATTAGACATGGAATG
** *
19190971 AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGTCGATCGAAGAGGCAA
1 AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAACCGACCGAAGAGGCAA
* ** * *
19191036 AATGCGCAAGCCTGGGATCAACCAGTCCCTTTTGCGTGCTACCAATCCTGCTGCCGTAACCCTCG
66 AATGCGCAAGCCTGGGATCAACCAGACCCTCATGCGTGCTACCAATCCTGCTACCATAACCCTCG
* * * *
19191101 GTCTGGTCCGATCTTAAACTAGGAATGAACTCTGTATGCTTAGATTGGGGATGAACTTCGTATGC
131 GTCCGGTCCGATCTTAGACT-GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGC
**
19191166 CTAAGTCAACCCACGAAACGAGCGT
195 CTAAGTCAACCCGTGAAACGAGCGT
19191191 GCGAGCGCTC
Statistics
Matches: 915, Mismatches: 162, Indels: 36
0.82 0.15 0.03
Matches are distributed among these distances:
867 111 0.12
868 277 0.30
869 133 0.15
870 16 0.02
874 5 0.01
875 4 0.00
877 2 0.00
879 1 0.00
880 128 0.14
881 237 0.26
882 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (873 bp):
AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAACCGACCGAAGAGGCAA
AATGCGCAAGCCTGGGATCAACCAGACCCTCATGCGTGCTACCAATCCTGCTACCATAACCCTCG
GTCCGGTCCGATCTTAGACTGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCC
TAAGTCAACCCGTGAAACGAGCGTACGAATGCTCAACCGGCCGGAGAGGCCGACCGAAGAGGCAT
AATACACAAGCCGGGGATCAACCCGATCCCCTTCTACGAGCTACCGATCCCGCTGCCGGTCCTGC
TGCCACAACCCTCAGCCAGGCTGGGGCTTAGACATAGAATGAACTTCGTATCCCTAAGCCAACCC
ACAAAACGAACGTACAGGCGCTCAACCGATCAAAGAGGCAGAATGCGCAAGCCGGACGAACCGAT
CCCTCCGTGCTGTCGATCCTACTGCTGGCCCTACTGCCACAACCATTGGTCCGATCTGATCTTAC
ACTGGGAATGAACTCCATATGCTTAGACATGGAAGGAACTACGTATGCCTAAGCCAACCCATGAA
ACAAGCGTGCGGGCATTCAACCGATCGGAGAGGCAGAATAAAAAAGCTGAGGACCGACCCGATCC
CCCTAGCGTGATGTCGATCCTGCTACCACAACCCTCGGTCCGATCTAATCTTAGACTGGAAATGA
ACTCCGTATGCCTAAGTCAACCCATCAAACGAGCATACAGGCGCTGAGTAGGCCAGAGAGGCATA
ATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGCGCTGCCGGTCCCGCTACCACAACCCTC
AGACCGACTGGGAATTAGACATGGAATG
Found at i:19192289 original size:159 final size:157
Alignment explanation
Indices: 19191860--19192306 Score: 463
Period size: 159 Copynumber: 2.8 Consensus size: 157
19191850 AACTTCGTAT
* * * * *
19191860 GCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
19191925 CCGGCCAAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGTTCCCCCCTTGTGTGCTGTCAATC
66 CCGACCGAAGAGGCAGAATGCGCAAG-TCGGGATCGGCCCGATCCCCCC-TACGTGCTGTCAATC
* * *
19191990 CTGCTGCCACAACCCTCAATCCGGTCTGA
129 CCGCTACCACAACCCTCAAGCCGGTCTGA
* * *
19192019 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** *
19192083 GCCTACCGAAGAGGCATAATGCGCAAGTTGGGAATCAACCCGATCCCCCTCTACGTGCTGTCAGT
65 GCCGACCGAAGAGGCAGAATGCGCAAGTCGGG-ATCGGCCCGATCCCCC-CTACGTGCTGTCAAT
*** *
19192148 CCCGCTACTGTAACCCTC-AGCCTGG-CTGGG
128 CCCGCTACCACAACCCTCAAGCC-GGTCT-GA
* * * * *
19192178 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
19192243 CCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCC-AGT-CCCCCTACGTGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGTCG-GGATCGGCCCGA-TCCCCCCTACGTGCTGTCAATC
19192306 C
129 C
19192307 TACTGTCTCG
Statistics
Matches: 237, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
157 15 0.06
158 15 0.06
159 203 0.86
160 4 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGTCGGGATCGGCCCGATCCCCCCTACGTGCTGTCAATCCC
GCTACCACAACCCTCAAGCCGGTCTGA
Found at i:19192491 original size:183 final size:183
Alignment explanation
Indices: 19192178--19192545 Score: 490
Period size: 183 Copynumber: 2.0 Consensus size: 183
19192168 CCTGGCTGGG
*
19192178 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * *
19192243 CCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCAGTCCCCCTACGTGCTGTCGATCCT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCACAGTCCCCCTACGTGCTGTCGATCCT
* * * *** * *
19192308 ACTGTCT-CGATCCTCGGTCCGGTTTGATCTTAGATTGGGAATGAAATCTGTAT
131 ACTG-CTACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAAATCCGTAT
* * * *
19192361 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * *
19192426 CCGACCGAAGAGGCAGAATGCGTAAGCC-AGAGAT-GGCACGGTCCCCCCTGCGTGCTGTTGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGAG-GATCGGCACAGT-CCCCCTACGTGCTGTCGATC
*
19192489 CTACTGCTACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
129 CTACTGCTACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAAATCCGTAT
19192544 GC
1 GC
19192546 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
182 10 0.06
183 150 0.94
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCACAGTCCCCCTACGTGCTGTCGATCCT
ACTGCTACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAAATCCGTAT
Found at i:19192805 original size:499 final size:500
Alignment explanation
Indices: 19191833--19193455 Score: 1848
Period size: 499 Copynumber: 3.3 Consensus size: 500
19191823 GTGGCCCAAA
* *
19191833 ATCTTAGATTGGGAATGAACTTCGTATGCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * **
19191898 CCACGGAATGAGCGTGCAGGCGCTCAGCCGGCCAAAGAGGCAGAATGCGCAAGCTGGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * * * * *
19191963 CCGTTCCCCCCTTGTGTGCTGTCAATCCTGCTGCCACAACCCTCAATCCGGTCTGATCTTAGACT
131 CCGGTCCCCCC-TGCGTGCTGTTAATCCTACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACT
* *** *
19192028 GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCTACCGAA
195 GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGTCGGA
* * * *
19192093 GAGGCATAATGCGCAAGT-TGGGAATCAACCCGATCCCCCTCTACGTGCTGTCAGTCCCGCTACT
260 GAGGCATAATGCGCAAGTCAGGG-ATCAGCCCGGTCCCCCTCTACGTGCTGTCAGTCCCGCTACC
** * *
19192157 GTAACCCTCAG-CCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATG
324 ACAACCCTCGGTCC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
* *
19192221 AAACGGGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTC-GAGGATCGGCCC-A
388 AAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCAG-GGATCGGCCCGA
* * * * * * *
19192284 GT-CCCCCTACGTGCTGTCGATCCTACTGTCTCGATCCTCGGTCCGGTTTG
452 -TCCCCCCTGCGTGTTCTCGATCCT-CTGTCTCAACCCTCGGTCCAGTCTG
* *
19192334 ATCTTAGATTGGGAATGAA-ATCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
19192398 CCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAGAATGCGTAAGCCAGAGAT-GG
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGG
* * * *
19192462 CACGGTCCCCCCTGCGTGCTGTTGATCCTACTGCTACAACCCTCAGTCCGGTCCAATCTTAGACT
130 CCCGGTCCCCCCTGCGTGCTGTTAATCCTACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACT
* * * *
19192527 GGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACAAGCATGCGGGCACTGAGCCGGTCGGA
195 GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGTCGGA
* * * * * * *
19192592 GAGGCATAATGCGTAAGTCAGGGATCAGCCTGGTCCCCCTCTGCATGCTGCCAGTCCCGCTGCCC
260 GAGGCATAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCAGTCCCGCTACCA
* * *
19192657 CAACCCTCGGTCCGG-TTGGGCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAATCCATGAA
325 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * *
19192721 ATGGGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAGAATGCACAAGTCAGGGATC-GCACCGATC
390 ACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGC-CCGATC
* * * *
19192785 CCCCCTGCGTGTTCTCGATCCTGT-TACTGCAACCCTCGATCCAATCCG
454 CCCCCTGCGTGTTCTCGATCCTCTGT-CT-CAACCCTCGGTCCAGTCTG
* * * * *
19192833 ACCTTAGACAGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * **
19192898 CCACGAAATGAGCTTGCGGGCGCTCAGCCAATCGGAGTGGCAGAA--CGTGAGCCAGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * * * * *
19192961 CCGGTCCCCCCTGCGTGCTATTCATCTTTCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTG
131 CCGGTCCCCCCTGCGTGCTGTTAATCCTACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTG
* * * * * * *
19193026 GGAATGAA-TTCATATGCCTAACTTAACCCACGAAAGGAGTGTGCGGGCACTGAGTCGGT-GGAA
196 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGTCGGAG
* * * * * * *
19193089 AGGCATAATGCACAAGCCAAGGATCGGCCCGGTCCCCCTCTTCGTGCTGTCGGTCCTGCTACCAC
261 AGGCATAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCAGTCCCGCTACCAC
* *
19193154 AACCCTCGGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
326 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * * * * * *
19193219 CAGGCATGCAGGCGCTCAGCCG-GCTGAGAGGCATAATGCGCAAG-CTAAGGATCGGCCCG-GCG
391 CGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTC-AGGGATCGGCCCGATC-
* * * *
19193281 CCCCCTGTGTGCTAC-CGATCCTGCTGCCACAACCCTC-GTCCAGTCTG
454 CCCCCTGCGTG-TTCTCGATCCT-CTGTCTCAACCCTCGGTCCAGTCTG
* * *
19193328 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * **
19193392 CCCACGAAACGAGCATGCGGGCGCTCAGCCGA-CTAGAGAGGCAGGATGCGCAAGCTGGGGATCG
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGA-AGAGGCAGAATGCGCAAGCCAGGGATCG
19193456 AACAGGTGGT
Statistics
Matches: 942, Mismatches: 158, Indels: 48
0.82 0.14 0.04
Matches are distributed among these distances:
494 2 0.00
495 100 0.11
496 121 0.13
497 136 0.14
498 166 0.18
499 287 0.30
500 20 0.02
501 110 0.12
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (500 bp):
ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGC
CCGGTCCCCCCTGCGTGCTGTTAATCCTACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGTCGGAG
AGGCATAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCAGTCCCGCTACCAC
AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCC
CCCTGCGTGTTCTCGATCCTCTGTCTCAACCCTCGGTCCAGTCTG
Found at i:19192839 original size:158 final size:156
Alignment explanation
Indices: 19192362--19192861 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 156
19192352 AATCTGTATG
*
19192362 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19192427 CGACCGAAGAGGCAGAATGCGTAAGCCAGAGATGGCA-CGGTCCCCCCTGCGTGCTGTTGATCCT
65 CGACCGGAGAGGCAGAATGCGTAAGTCAGGGATCGCACCGGTCCCCCCTGCGTG-TCTCGATCCT
* * *
19192491 ACTGCTACAACCCTC-AGTCCGGTCCAAT
129 GCTGCTACAACCCTCGA-TCCGGTCCGAC
* * * * * *
19192519 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACAAGCATGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAT-GAAACGAGCGTGCGGGCGCTCAG
** * * * *
19192583 CCGGTCGGAGAGGCATAATGCGTAAGTCAGGGATCAGC-CTGGTCCCCCTCTGCATG-CTGCCAG
64 CCGACCGGAGAGGCAGAATGCGTAAGTCAGGGATC-GCACCGGTCCCCC-CTGCGTGTCT-CGA-
* ** * * **
19192646 TCCCGCTGCCCCAACCCTCGGTCCGGT-TGGG
125 TCCTGCTGCTACAACCCTCGATCCGGTCCGAC
* * * * *
19192677 CTTAGACATGGAATGATCTCCCTATGCCTAAGCCAATCCATGAAATGGGCGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGCGCTCAGC
** *
19192742 CGACCGGAGAGGCAGAATGCACAAGTCAGGGATCGCACCGATCCCCCCTGCGTGTTCTCGATCCT
65 CGACCGGAGAGGCAGAATGCGTAAGTCAGGGATCGCACCGGTCCCCCCTGCGTG-TCTCGATCCT
* * * **
19192807 GTTACTGCAACCCTCGATCCAATCCGAC
129 GCTGCTACAACCCTCGATCCGGTCCGAC
*
19192835 CTTAGACAGGGAATGAACTCCGTATGC
1 CTTAGACATGGAATGAACTCCGTATGC
19192862 TTAGACATGA
Statistics
Matches: 267, Mismatches: 62, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 4 0.01
157 107 0.40
158 123 0.46
159 33 0.12
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCATGAAACGAGCGTGCGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGTAAGTCAGGGATCGCACCGGTCCCCCCTGCGTGTCTCGATCCTGC
TGCTACAACCCTCGATCCGGTCCGAC
Found at i:19192864 original size:26 final size:26
Alignment explanation
Indices: 19192835--19192887 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19192825 CCAATCCGAC
*
19192835 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
* *
19192861 CTTAGACATGAAATGAACTCTGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
19192887 C
1 C
19192888 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTCCGTATG
Found at i:19193366 original size:26 final size:26
Alignment explanation
Indices: 19193330--19193382 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19193320 CCAGTCTGAT
19193330 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
19193356 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19193382 C
1 C
19193383 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Done.