Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 175 of 402
Found at i:19194089 original size:26 final size:26
Alignment explanation
Indices: 19194051--19194103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19194041 GGCTCAAAAT
*
19194051 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19194077 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19194103 C
1 C
19194104 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19194586 original size:25 final size:26
Alignment explanation
Indices: 19194552--19194603 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19194542 CCGGTCTGAT
*
19194552 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19194577 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19194603 C
1 C
19194604 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19194960 original size:26 final size:26
Alignment explanation
Indices: 19194931--19194983 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19194921 CCGATCTGAT
19194931 CTTAGAAAGGGAATGAACTCCGTATG
1 CTTAGAAAGGGAATGAACTCCGTATG
* *
19194957 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAAAGGGAATGAACTCCGTATG
19194983 C
1 C
19194984 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGAAAGGGAATGAACTCCGTATG
Found at i:19195144 original size:46 final size:46
Alignment explanation
Indices: 19195059--19195157 Score: 144
Period size: 46 Copynumber: 2.2 Consensus size: 46
19195049 GGGGATCAGC
*
19195059 CCGGTCCCCCCTGCATGCTATCGATCCTGCTACCGCAACCCTCGGT
1 CCGGTCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCGGT
* * * * *
19195105 CCGGTCCCCCCTGCGTGCTGTTGATCTTGCTGCCACAACCCTCGGT
1 CCGGTCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCGGT
19195151 CCGGTCC
1 CCGGTCC
19195158 GATCTTAGAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.10, C:0.44, G:0.22, T:0.23
Consensus pattern (46 bp):
CCGGTCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCGGT
Found at i:19195489 original size:156 final size:156
Alignment explanation
Indices: 19195100--19195500 Score: 432
Period size: 157 Copynumber: 2.6 Consensus size: 156
19195090 ACCGCAACCC
* * *
19195100 TCGGTCCGGTCCCCCCTGCGTGCTGTTGATCTTGCTGCCACAACCCTCGGTCCGGTCCGATCTTA
1 TCGG-CCGGTCCCCCCTGCGTGCTGTAGATCCTACTGCCACAACCCTCGGTCCGGTCC-ATCTTA
* * * *
19195165 GACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTGAGCTGGT
64 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGACGCTCAGCTGGC
** * *
19195230 CGGAGAGGCATAATGTGCAAGCCGGGGA
129 CAAAGAGGCAGAATGGGCAAGCCGGGGA
* ** *** * ****
19195258 TTGGCC-GTCCCCTTTTGCGTGCTACCGATCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTA
1 TCGGCCGGTCCCC-CCTGCGTGCTGTAGATCCTACTGCCACAACCCTCGGTCCGG-TCCATCTTA
* * *
19195322 GACAT-GGAATGAACTCCCTATGCCTAAGCCAA-CAACGAAACGGGCGTGCGGGCGCTCAG-TCG
64 GAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGACGCTCAGCT-G
*
19195384 GCCAAAGAGGTAGAATGGGCAAGCCGGGGA
127 GCCAAAGAGGCAGAATGGGCAAGCCGGGGA
* * * *
19195414 TCGGCCCGGTCCCCCCTGCGTGCTGTAGATCGTACTGCCGCAACCCTCAGTCCAGTCCATCTTAG
1 TCGG-CCGGTCCCCCCTGCGTGCTGTAGATCCTACTGCCACAACCCTCGGTCCGGTCCATCTTAG
*
19195479 ACTGGGAATGAAATCCGTATGC
65 ACTGGGAATGAACTCCGTATGC
19195501 TTAGACGGGG
Statistics
Matches: 194, Mismatches: 42, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
155 2 0.01
156 81 0.42
157 100 0.52
158 11 0.06
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (156 bp):
TCGGCCGGTCCCCCCTGCGTGCTGTAGATCCTACTGCCACAACCCTCGGTCCGGTCCATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGACGCTCAGCTGGCCA
AAGAGGCAGAATGGGCAAGCCGGGGA
Found at i:19195515 original size:26 final size:26
Alignment explanation
Indices: 19195474--19195526 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19195464 TCCAGTCCAT
*
19195474 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACGGGGAATGAAATCCGTATG
* * *
19195500 CTTAGACGGGGGATGAATTCTGTATG
1 CTTAGACGGGGAATGAAATCCGTATG
19195526 C
1 C
19195527 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACGGGGAATGAAATCCGTATG
Found at i:19196906 original size:26 final size:26
Alignment explanation
Indices: 19196877--19196929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19196867 CCGATCCAAT
19196877 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
19196903 CTTAGTCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19196929 C
1 C
19196930 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19196936 original size:27 final size:26
Alignment explanation
Indices: 19196883--19196936 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19196873 CAATCTTAGA
*
19196883 CTGGGAATGAACTCCATATGCTTAGT
1 CTGGGAATGAACTCCATATGCTAAGT
* *
19196909 CTGGGGATGAACTCCGTATGCCTAAGT
1 CTGGGAATGAACTCCATATG-CTAAGT
19196936 C
1 C
19196937 AACCCACGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (26 bp):
CTGGGAATGAACTCCATATGCTAAGT
Found at i:19198265 original size:346 final size:341
Alignment explanation
Indices: 19197600--19198288 Score: 712
Period size: 346 Copynumber: 2.0 Consensus size: 341
19197590 CCGGTCTGAT
* * * * * * *
19197600 CTTAGACTGGGAATGAAGTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAAC
* * * * * * **
19197665 CAGTAGGAGAGGCATAATGCGTAAGCCCGAGATCGGCCCGGTCCCCCTCTGCGCGCTGCCGGTCC
66 CAGCAGGAGAGGCAGAATGCGCAAGCCAGAGACCGGCCCGGTCCCCCTCTACGCGCTGCCAATCC
* ** *
19197730 CGCTGCCACAACCCTTGGTCCGGCTGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
131 AGCTGCCACAACCCTCAGTCCGACTGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * ** * * ** *
19197795 AAATGAAACGGGCGTGCGGGCACTTAGCCGGTCAGAGAGGCAGATTGTGCAAGTCGGGGATTGCC
196 AAACGAAACGAGCGTGCGGG-ACTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGGGGACCGAC
* ** *
19197860 CCTGTTGCCCCCGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTTCGATTCGATCTTATACT-
260 CCTGATGCCCCCGCGTGCTATCGATCCTGCTACCGCAACCCTCAATTCGATTCGATCTTAGACTG
19197924 GAGAATGAAATCTGTATG
325 GA-AATGAAATCTGTATG
*
19197942 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
* * * * *
19198006 CC-GCCGGAGAGGCAGAATGCGCAAGTCAGGGACCGGCCCGGTCCCCTTCTACGTGCTGCCAATC
65 CCAGCAGGAGAGGCAGAATGCGCAAGCCAGAGACCGGCCCGGTCCCCCTCTACGCGCTGCCAATC
*
19198070 CTGTAGCCTGCTAACACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCC
130 C---AG-CTGC---CACAACCCTCAGTCCGACTGGGG-TTAGACATGGAATGAACTCCCTATGCC
** * * *
19198135 TAAGCCAACCCACGAAATGAGCTTGC-GG-CTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGG
187 TAAGCCAACAAACGAAACGAGCGTGCGGGACTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGG
* * * * *
19198198 GGACCGACTC-GAT-CCCCTCTGGGTGCTGTCGATCTTGCTGCCGCAACCCTCAA-TCTGA-TCT
252 GGACCGACCCTGATGCCCC-C-GCGTGCTATCGATCCTGCTACCGCAACCCTCAATTC-GATTC-
* *
19198259 GATCTTAGATTGGAAATGAACTCTGTATG
313 GATCTTAGACTGGAAATGAAATCTGTATG
19198288 C
1 C
19198289 CTAAGTCAAC
Statistics
Matches: 281, Mismatches: 52, Indels: 24
0.79 0.15 0.07
Matches are distributed among these distances:
341 50 0.18
342 56 0.20
343 1 0.00
344 5 0.02
345 11 0.04
346 88 0.31
347 2 0.01
348 22 0.08
349 46 0.16
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (341 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAAC
CAGCAGGAGAGGCAGAATGCGCAAGCCAGAGACCGGCCCGGTCCCCCTCTACGCGCTGCCAATCC
AGCTGCCACAACCCTCAGTCCGACTGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
AAACGAAACGAGCGTGCGGGACTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACC
CTGATGCCCCCGCGTGCTATCGATCCTGCTACCGCAACCCTCAATTCGATTCGATCTTAGACTGG
AAATGAAATCTGTATG
Found at i:19198299 original size:155 final size:162
Alignment explanation
Indices: 19197941--19198464 Score: 490
Period size: 157 Copynumber: 3.3 Consensus size: 162
19197931 AAATCTGTAT
19197941 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCA-GCGCTCAA
* *
19198006 CCGCCGGAGAGGCAGAATGCGCAAGTCAGGGACCGGCCCGGTCCCCTTCTACGTGCTGCCAATCC
65 CCGCCGGAGAGGCAGAATGCGCAAGTCAGGGACCGACCCGATCCCCTTCTACGTGCTGCCAATCC
* *
19198071 TGTAGCCTGCTAACACAACCCTCAGTCCGACTGGG
130 TGTAGCCTGC--ACACAACCCTCAATCCGACTGGA
* * *
19198106 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCTTGC-G-GCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGCGCTCAAC
* * ** * *
19198169 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACTCGATCCCC-TCTGGGTGCTGTCGAT-C
66 CG-CCGGAGAGGCAGAATGCGCAAGTCAGGGACCGACCCGATCCCCTTCTACGTGCTGCCAATCC
* *
19198232 T-T-G-CTGC-CGCAACCCTCAATCTGATCT-GA
130 TGTAGCCTGCACACAACCCTCAATCCGA-CTGGA
* * * * * * * * * *
19198261 TCTTAGA-TTGGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGTGTAC-GGGCGTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGCGC-TCA
* * * * * * * * **
19198324 GCCTGCCGAAAAGGCATAATGCGCAAG-CCGGGATCGACCCGATCCCCCTCTACGTGCTACTGAT
64 ACC-GCCGGAGAGGCAGAATGCGCAAGTCAGGGACCGACCCGATCCCCTTCTACGTGCTGCCAAT
* * *
19198388 CC--T-G-CTGC-CACAACCCTCGA-CCTGGCTGGG
128 CCTGTAGCCTGCACACAACCCTCAATCC-GACTGGA
*
19198418 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
19198465 AGGCGTATGG
Statistics
Matches: 300, Mismatches: 48, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
154 3 0.01
155 57 0.19
156 24 0.08
157 90 0.30
158 9 0.03
159 1 0.00
160 1 0.00
161 2 0.01
162 20 0.07
163 40 0.13
165 53 0.18
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (162 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGCGCTCAAC
CGCCGGAGAGGCAGAATGCGCAAGTCAGGGACCGACCCGATCCCCTTCTACGTGCTGCCAATCCT
GTAGCCTGCACACAACCCTCAATCCGACTGGA
Found at i:19198606 original size:26 final size:26
Alignment explanation
Indices: 19198577--19198627 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19198567 CCAGTCCGAT
19198577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19198603 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19198628 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19200083 original size:159 final size:158
Alignment explanation
Indices: 19199677--19200179 Score: 450
Period size: 158 Copynumber: 3.2 Consensus size: 158
19199667 AACTTTGTAT
* * * *
19199677 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACAAAACAAGCATACGGGCACTCAG
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* * * * * *
19199742 TCGACCGGAAAGGCAGAATGTGCAAGCCGGGAATTGGCCCGGTCCCCCCTGCGTGCTATCGATCT
66 CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
* * ** *
19199807 TGCTGCCGTAACCCTCGGTCCAATCTGA
131 CGCTACCACAACCCTCAGTCCAATCTGA
* ** * ** * * * *
19199835 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGCCGCTGAG
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* * * * * * * *
19199900 CCGATCGGAGAGACATAATGCGCAAGTCGGGGATCGGGCCGATCCCCCTCTGTGTGCTATCGGTC
66 CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATC
* *** *
19199965 CCGGTACCACAACCCTCAGTCTGGT-TGGG
130 CCGCTACCACAACCCTCAGTCCAATCT-GA
* * *
19199994 GCTTAGACACAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* * * * * * * *
19200059 CCCACCGAAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCACCCCTACATGCTGTCGATCC
66 CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
** * * * **
19200124 TACTGCCACAACCCTCGGTCTAATCCAA
131 CGCTACCACAACCCTCAGTCCAATCTGA
* **
19200152 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACACGGAATGAACTCCGTATGC
19200180 TTAGTCTGGG
Statistics
Matches: 261, Mismatches: 81, Indels: 6
0.75 0.23 0.02
Matches are distributed among these distances:
158 142 0.54
159 119 0.46
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
CGCTACCACAACCCTCAGTCCAATCTGA
Found at i:19200189 original size:26 final size:26
Alignment explanation
Indices: 19200153--19200205 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19200143 CTAATCCAAT
*
19200153 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
19200179 CTTAGTCTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19200205 C
1 C
19200206 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19200786 original size:26 final size:26
Alignment explanation
Indices: 19200748--19200800 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19200738 GGCTCAAACT
19200748 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
19200774 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAGGAACTCCGTATG
19200800 C
1 C
19200801 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:19201035 original size:153 final size:154
Alignment explanation
Indices: 19200747--19201036 Score: 392
Period size: 153 Copynumber: 1.9 Consensus size: 154
19200737 TGGCTCAAAC
*
19200747 TCTTAGACTGGGAAGGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAAGGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* *
19200812 CACGAAACGAGCGTGCGGGTGCTCAACTGGCCGGAGAGGCAGAATGCGTAAGTCAGGGATCGGCC
66 CACGAAACGAGCGTGCGGGTGCTCAACTGGCCAGAGAGGCAGAATGCGTAAGTCAGGGATCAGCC
*
19200877 TGATCCCTTTCTACATGTTGTTGA
131 CGATCCCTTTCTACATGTTGTTGA
* * * *
19200901 TCTTAGACTGGGAATGAACTCTATATGCTTAGAC-TGGGGATGAACTCCGT-TGCCTAAGTCAAC
1 TCTTAGACTGGGAAGGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
19200964 CCATGAAACGAGCGTGCGGGTGTTC-AGTCGGCCAGAGAGGCATAATGC-TCAAG-CTGGGGATC
65 CCACGAAACGAGCGTGCGGGTGCTCAACT-GGCCAGAGAGGCAGAATGCGT-AAGTC-AGGGATC
19201026 AGCCCGATCCC
127 AGCCCGATCCC
19201037 CCTCTGTGTG
Statistics
Matches: 119, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
152 4 0.03
153 71 0.60
154 44 0.37
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (154 bp):
TCTTAGACTGGGAAGGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGTGCTCAACTGGCCAGAGAGGCAGAATGCGTAAGTCAGGGATCAGCC
CGATCCCTTTCTACATGTTGTTGA
Found at i:19201887 original size:159 final size:159
Alignment explanation
Indices: 19201418--19202069 Score: 495
Period size: 159 Copynumber: 4.1 Consensus size: 159
19201408 GTCACCCTCA
* *
19201418 GTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTG
1 GTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTG
* * * *
19201483 CGGGCACTGAGCTAGTCGGAGAGGCATAAT-CTGCAAGTC-AGGGAT-TGACCCGGT-CCCCTCT
66 CGGGCGCTGAGCCAGTCGGAGAGGCATAATGC-GCAAGCCGA-GGATCAG-CCCGGTCCCCCTCT
* * *
19201544 ACTTGCTGCCGGTCCCGCTGCCACAACCCTTG
128 ACGTGCTGCCAGTCCCGCTGCCGCAACCCTTG
** ** * * * *
19201576 GT-TCGGTTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCG
1 GTCT-GGTCCGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAG
* * * ** * * *
19201639 TGCGGGCGCTCAGCCTA-CCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCTCGGTGCACCC-C
64 TGCGGGCGCTGAGCC-AGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGT-CCCCCTC
* * * * **
19201702 TGCGTGCTGTCAATCCTGCTATCGCAACCCTTG
127 TACGTGCTGCCAGTCCCGCTGCCGCAACCCTTG
* ** * * *
19201735 GTCTAGTCCGATCTTAGACTAGGAATGAACTTTGTACGCCTAAGTCAACCCATAAAATGAGAGTG
1 GTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTG
* * *
19201800 CGGGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACG
66 CGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACG
* ** * *
19201865 AGCTGCCAGTCCCATTGCCGCAAACCTTA
131 TGCTGCCAGTCCCGCTGCCGCAACCCTTG
* ** * * * * *
19201894 GTCCGGCTGGGA-CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTG
1 GTCTGG-TCCGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAG
* * * ** * * *
19201957 TGCGGGCGC-GCAGCC-GACTGGATAGGCAGAATGCGTGAGCTGATGATCAGCTCGGTCCCCC-C
64 TGCGGGCGCTG-AGCCAGTC-GGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTC
* * **
19202019 TGCGTGCTGCC-GACCCTGCTGCCGCAACCCTCA
127 TACGTGCTGCCAGTCCC-GCTGCCGCAACCCTTG
* *
19202052 GTCTGATCTGATCTTAGA
1 GTCTGGTCCGATCTTAGA
19202070 TTGAGAGTGA
Statistics
Matches: 377, Mismatches: 99, Indels: 36
0.74 0.19 0.07
Matches are distributed among these distances:
157 9 0.02
158 128 0.34
159 232 0.62
160 8 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTG
CGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACG
TGCTGCCAGTCCCGCTGCCGCAACCCTTG
Found at i:19202067 original size:317 final size:317
Alignment explanation
Indices: 19201337--19202069 Score: 877
Period size: 317 Copynumber: 2.3 Consensus size: 317
19201327 GGGCACTCAG
* * * * * * * *
19201337 CGACC-GAGAGGCAGAATGCACAAGTCGGGGACCGGCTTGGTCCCCCCCTGCGTGCTATCGATCC
1 CGACCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCTCGGTGCCCCCCTGCGTGCTGTCGATCC
* * *
19201401 TACTGCCGTC-ACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
66 TGCTGCCG-CAACCCTCAGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCA
* * * *
19201465 ACCCACGAAACGAGAGTGCGGGCACTGAGCTAGTCGGAGAGGCATAATCTGCAAGTCAGGGATTG
130 ACCCACAAAACGAGAGTGCGGGCACTGAGCCAGTCGGAGAGGCATAATCTGCAAGCCAGGGATAG
* ** * * * * * * *
19201530 ACCCGGTCCCCTCTACTTGCTGCCGGTCCCGCTGCCACAACCCTTGGTTCGGTTGGGGCTTAGAC
195 ACCCGATCCCCTCTACGAGCTGCCAGTCCCACTGCCACAAACCTTAGTCCGGCTGGGACTTAGAC
*
19201595 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
260 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCGCAGC
* * * *
19201653 CTACCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCTCGGTGCACCCCTGCGTGCTGTCAATCC
1 CGACCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCTCGGTGCCCCCCTGCGTGCTGTCGATCC
** ** * **
19201718 TGCTATCGCAACCCTTGGTCT-AGTCCGATCTTAGACTAGGAATGAACTTTGTACGCCTAAGTCA
66 TGCTGCCGCAACCCTCAGTCTGA-TCTGATCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCA
* * ** *
19201782 ACCCATAAAATGAGAGTGCGGGTGCTGAGCCGGTCGGAGAGGCATAATGC-GCAAGCC-GAGGAT
130 ACCCACAAAACGAGAGTGCGGGCACTGAGCCAGTCGGAGAGGCATAAT-CTGCAAGCCAG-GGAT
* *
19201845 CAG-CCCGATCCCCCTCTACGAGCTGCCAGTCCCATTGCCGCAAACCTTAGTCCGGCTGGGACTT
193 -AGACCCGAT-CCCCTCTACGAGCTGCCAGTCCCACTGCCACAAACCTTAGTCCGGCTGGGACTT
* *
19201909 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCGCAGC
256 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCGCAGC
* * * * * * * *
19201971 CGACTGGATAGGCAGAATGCGTGAGCTGATGATCAGCTCGGT-CCCCCCTGCGTGCTGCCGACCC
1 CGACCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCTCGGTGCCCCCCTGCGTGCTGTCGATCC
19202035 TGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGA
66 TGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGA
19202070 TTGAGAGTGA
Statistics
Matches: 348, Mismatches: 61, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
316 6 0.02
317 203 0.58
318 139 0.40
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
CGACCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCTCGGTGCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAA
CCCACAAAACGAGAGTGCGGGCACTGAGCCAGTCGGAGAGGCATAATCTGCAAGCCAGGGATAGA
CCCGATCCCCTCTACGAGCTGCCAGTCCCACTGCCACAAACCTTAGTCCGGCTGGGACTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCGCAGC
Found at i:19202869 original size:171 final size:171
Alignment explanation
Indices: 19202565--19202872 Score: 406
Period size: 171 Copynumber: 1.8 Consensus size: 171
19202555 CCGGCCCCAT
* * *
19202565 TGCCATAACCTTCGGTCTGACTGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * ** * * *
19202630 GCGAAACGGGCCTGCAGCCGTTCAGTTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTAGCTC
66 ACGAAACGAGCCTGCAGCCACTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATGAGCTC
19202695 GGTCCCCTTCTGCATGCTACCGATCCTGCTACCAGTCCTGC
131 GGTCCCCTTCTGCATGCTACCGATCCTGCTACCAGTCCTGC
* * *
19202736 TGCCACAACCCTCGGTCCGGCTAGGG-CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCCGACT-GGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
19202800 CACGAAACGAGCGTGCGGGCACTCAGTCGGCTGGAGAGGTAGAATGCACAAGCC-GGGCATCGA-
65 CACGAAACGAGCCTGCAGCCACTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCAGGG-AT-GAG
19202863 CTCGGTCCCC
128 CTCGGTCCCC
19202873 CCTGCGTGCT
Statistics
Matches: 116, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
170 3 0.03
171 109 0.94
172 4 0.03
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (171 bp):
TGCCACAACCCTCGGTCCGACTGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGAGCCTGCAGCCACTCAGTCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATGAGCTC
GGTCCCCTTCTGCATGCTACCGATCCTGCTACCAGTCCTGC
Found at i:19202958 original size:26 final size:26
Alignment explanation
Indices: 19202921--19202971 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19202911 CGATCCGATC
*
19202921 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCTATATGG
19202947 TTAGACAT-GGAATGAACTCTATATG
1 TTAGAC-TGGGAATGAACTCTATATG
19202972 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTATATGG
Found at i:19203106 original size:184 final size:184
Alignment explanation
Indices: 19202763--19203126 Score: 455
Period size: 184 Copynumber: 2.0 Consensus size: 184
19202753 CGGCTAGGGC
* * *
19202763 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTC
1 TTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCC
* ** * * * *
19202828 GGCTGGAGAGGTAGAATGCACAAGCCGGGCATCGACTCGGTCCCCCCTGCGTGCTGCTGATCCTA
66 GACCAGAGACGCAGAATGCACAAGCCGGGCATCGACCCGATCCCCCCTGCGTGCTGCTGATCCTA
*
19202893 CTTTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGG
131 CTTTCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCTGTATGG
* * *
19202947 TTAGACATGGAATGAAC-TCTATATGCCTAAGCCAACCCACGAAATGAGTGTGCGAGCGCTCAGC
1 TTAGACATGGAATGAACTTC-ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGC
* * * * *
19203011 CGACCAGAGACGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTTGCGTGCT-ATCGATCC
65 CGACCAGAGACGCAGAATGCACAAGCCGGGCATCGACCCGATCCCCCCTGCGTGCTGCT-GATCC
* * * * * *
19203075 T-GTTGTCGTAACCCTTGGTTCGGTTCGATCTTAGACTAGGAATGAACTCTGT
129 TACTT-TCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCTGT
19203127 CTGCCTAAGT
Statistics
Matches: 152, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 5 0.03
184 147 0.97
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
TTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCC
GACCAGAGACGCAGAATGCACAAGCCGGGCATCGACCCGATCCCCCCTGCGTGCTGCTGATCCTA
CTTTCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCTGTATGG
Found at i:19203462 original size:26 final size:26
Alignment explanation
Indices: 19203421--19203473 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19203411 CCAATCCGAT
*
19203421 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
19203447 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19203473 C
1 C
19203474 CTAATTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19204357 original size:26 final size:26
Alignment explanation
Indices: 19204316--19204368 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19204306 CTGGTTCGAT
*
19204316 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
**
19204342 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
19204368 C
1 C
19204369 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:19204454 original size:184 final size:183
Alignment explanation
Indices: 19204131--19204723 Score: 611
Period size: 184 Copynumber: 3.2 Consensus size: 183
19204121 TGGCTCAAAC
* * * *
19204131 TCTTAGACTGGGAATTAACTTCGTATGCTTAGACATTGAATGAATTCCATATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
** * * * * * *
19204196 CATTAAATGAGCGTGCGGGCGCTCAACCGATCAGAAAGGCAGAATGCTTAAGCCGGGGATCGGCC
66 CACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAATGCATAAGCCGGGGATC-GCC
*
19204261 TAGTCCCCCCTACGTGCTATCGATCTTGCTACCACAACCCTCGGTCTGGT-TCGA
130 CAGTCCCCCCTACGTGCTATCGATCTTGCTACCACAACCCTCGGTCTGGTCT-GA
* * *
19204315 TCTTAGACTGGCAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAAC
* * * *
19204379 CCACGAAACGAGCGTGCAGACGCTCAGCCGGTCGGAGAGGTAGAATGCATAAGCCGAGGATCGAC
65 CCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAATGCATAAGCCGGGGATCG-C
* *
19204444 CC-GATCCCCCCCTACGTGCTACCGATCTTGCTACTGGTCCTGCTACTGGAACCCTTGGT-TCGG
129 CCAG-T-CCCCCCTACGTGCTATCGATCTTGCTA------C--C-AC---AACCCTCGGTCT-GG
19204507 TCTGA
179 TCTGA
* * * *
19204512 TCTTAGATTGGGAATGTACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * ** * * *
19204577 AACGAAACGAGCGTACGGGTACTCAACCGGTCGGAGAGGTAGAATGCGTAAGTCGGGGACCGGCC
66 CACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAATGCATAAGCCGGGGATC-GCC
* * * * * *
19204642 CAGTCCCCCTTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCT-GTCTGA
130 CAGTCCCCCCTACGTGCTATCGATCTTGCTACCACAACCCTCGGT-CTGGTCTGA
19204696 TCTTAGACTGGGAATGAACTCCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
19204724 CGAAGTTAAC
Statistics
Matches: 335, Mismatches: 51, Indels: 46
0.78 0.12 0.11
Matches are distributed among these distances:
183 3 0.01
184 148 0.44
185 26 0.08
186 1 0.00
187 2 0.01
188 1 0.00
190 1 0.00
191 1 0.00
193 1 0.00
194 2 0.01
196 21 0.06
197 124 0.37
198 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (183 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAATGCATAAGCCGGGGATCGCCC
AGTCCCCCCTACGTGCTATCGATCTTGCTACCACAACCCTCGGTCTGGTCTGA
Found at i:19205038 original size:26 final size:26
Alignment explanation
Indices: 19205009--19205061 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19204999 TCGGTCTGAT
19205009 CTTAGACTGG-GAAAGAACTCTGTATG
1 CTTAGACTGGAG-AAGAACTCTGTATG
*
19205035 CTTAGACTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGAAGAACTCTGTATG
19205061 C
1 C
19205062 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGAAGAACTCTGTATG
Found at i:19205921 original size:26 final size:26
Alignment explanation
Indices: 19205892--19205944 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19205882 CCGATCCAAT
19205892 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19205918 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19205944 C
1 C
19205945 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19207300 original size:159 final size:158
Alignment explanation
Indices: 19206988--19207886 Score: 374
Period size: 159 Copynumber: 5.5 Consensus size: 158
19206978 CTACTGCTAG
*
19206988 TCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
19207053 CAACCCACAAAATGAGCGTACAAGTGCTCAACCGGCTGGAGATGCAGAATGCGCAAGTTGGGGAC
66 CAACCCACAAAATGAGCGTA-AAGGGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGGGAC
* *
19207118 CAGCCCGGTCCCCCCCTGTGTGCTATCGA
130 CAGCCCGATCCCCCCCTGCGTGCTATCGA
* * * * * *
19207147 TCCTACTATCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGTAATGAACTCCGTATGCCTAAGT
1 TCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * * * *
19207212 CAACCCATGAAATGAGCGT-TAGGGCACTGAGCCGACCGGAGAGGCATAATGCACAAGTCGGGGA
66 CAACCCACAAAATGAGCGTAAAGGG--CTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGGGA
* ** * * **
19207276 TCAGCTTGATCCCTCTCTGCGTGCTGCCGGTA
129 CCAGCCCGATCCCCCCCTGCGTGCTATC-G-A
** * * * * * **
19207308 T-C-GGTGCCACTACCCCCGGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTCC-TATGCCTAA
1 TCCTACTACCGCAACCCTCGGTCCGATC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
** * * ** * * * ** ** * *
19207368 GCCAACCCATGAAATGGGAGTGCGAGCGATGAGTCGACCAGG-GAGATAGAATGCGCAAGTGGGG
64 GCCAACCCACAAAATGAGCGT-AAAGGGCTCAACCGACC-GGAGAGGCAGAATGCACAAGTCGGG
* * * * *
19207432 GA-TAGGCCCGGT--CCACTTGCGTGCTGTCGA
127 GACCA-GCCCGATCCCCCCCTGCGTGCTATCGA
* * * * * * *
19207462 TCCTGCTGCCGTAACCCTCGGTTCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*** * *
19207527 CAACCCACGAAAA-GAGCGTGCGGGAGCTCAACC-AGCCGGAGAGGCCGATCGAGAGGCATAATG
66 CAACCCAC-AAAATGAGCGTAAAGG-GCTCAACCGA-CCGGAGAGG-C-A--GA-ATGCACAA--
* * * *
19207590 GGTAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTGCTGATCCCGCTGGCGG
121 -GT----CGGGGACCAGCCCGATCCCCCCCTGC--G-TGCT-A------T--CGA
* * * * * ** * * *
19207645 TCCTACTACCACAACCCTCAGTTCG-GCAGGGGCTTACACAT-GAAATTAACTCCGTATGCCTAA
1 TCCTACTACCGCAACCCTCGGTCCGATC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
** * * ** * ** * *
19207708 GCCAACCCATGAAACGAGTGTACGGGTGCTCAACCGACCGGAAAGGCAGAATGCGTAAGCCGAGG
64 GCCAACCCACAAAATGAGCGTAAAGG-GCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGGG
** * *
19207773 A-TGGTCCC-AGT-CCCCCCTACGTGCTGTCGA
128 ACCAG-CCCGA-TCCCCCCCTGCGTGCTATCGA
* * *
19207803 TCCTACTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
19207868 CAACCCACGAAACGAGCGT
66 CAACCCACAAAATGAGCGT
19207887 TCGGGCACTG
Statistics
Matches: 543, Mismatches: 143, Indels: 109
0.68 0.18 0.14
Matches are distributed among these distances:
154 2 0.00
155 3 0.01
156 50 0.09
157 36 0.07
158 130 0.24
159 160 0.29
160 7 0.01
161 4 0.01
162 5 0.01
165 2 0.00
167 4 0.01
168 1 0.00
169 10 0.02
170 10 0.02
171 15 0.03
173 1 0.00
174 4 0.01
175 1 0.00
178 6 0.01
179 2 0.00
181 2 0.00
182 5 0.01
183 81 0.15
184 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
TCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCACAAAATGAGCGTAAAGGGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGGGACC
AGCCCGATCCCCCCCTGCGTGCTATCGA
Found at i:19207944 original size:158 final size:159
Alignment explanation
Indices: 19207692--19208673 Score: 497
Period size: 158 Copynumber: 6.1 Consensus size: 159
19207682 ACATGAAATT
* * **
19207692 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGTGCTCAACCGACCGGAA-AGGCA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACCGGAAGAGGCA
* *
19207756 GAATGCGTAAGCCGAGGAT-GGTCCCAGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCC
66 GAATGCGTAAGCCGAGGATCGG-CCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCC
19207820 TCGGTCTGATCCGATCTTAGACTGGGAATG
130 TCGGTCTGATCCGATCTTAGACTGGGAATG
* * * * *
19207850 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCGATC-GAAGAGGCA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACCGGAAGAGGCA
* * * * * * * * *
19207914 TAATGCGCAAGCC-AGGGATCAGCTCGGTCCCTCTTGCGTGCT-ACTGGT-CT-CGGTGCCACAA
66 GAATGCGTAAGCCGA-GGATCGGCCCGGTCCCCCCTGCGTGCTGTC-GATCCTAC--TGCCGCAA
* * * **
19207975 CCCTCGGTCCG-GCTGGGGCTTAGACAT-GGAATG
127 CCCTCGGTCTGATC-CGATCTTAGAC-TGGGAATG
* * * * * * *
19208008 AACTCC-TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGA-TCAACC-AGCTGG-GGAAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGG-CACTCAACCGA-CCGGAAGAGG
* * *
19208069 CAGAATGCGTAAGTCGAGGATCGGCCCGGTCCCCTC-GCGTGCTGTCGATCCTGA-TGCTGCAAC
64 CAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT-ACTGCCGCAAC
* * *
19208132 CCTCGAT-TCAATCTGATCTTAGACTGGGAATG
128 CCTCGGTCT-GATCCGATCTTAGACTGGGAATG
* * ** * *
19208164 AACTCTGTTTTTCTAAGTCAACCCACGAAACGAGCATACGAGCGTTCAGCCGGTCGGAGAGGCCG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG-G-G--CA--C--TC--A-A--CCG
* * * * *
19208229 ATCGG-AGAGGCATAATGCGTAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCCC
53 ACCGGAAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGT-CCCC-C--C-TG----CG-T---
* * * * * **
19208293 GCTGTCGGTCCTACTGCCACAACCCTCAGTCTG-GCTGGGGCTTAGACAT-GGAATG
105 GCTGTCGATCCTACTGCCGCAACCCTCGGTCTGATC-CGATCTTAGAC-TGGGAATG
* * * *** * *
19208348 ACCTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGATGCTCAACCGGCC-GAAGAGGTA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACCGGAAGAGGCA
** * * ** * *
19208412 GAATGCACAAGCCGAGGATCTG-CCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCT
66 GAATGCGTAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTACTGCCGCAACCC
* * * ** *
19208476 TCGGTCCG-GCTGGGGCTTAGACAT-GAAATG
130 TCGGTCTGATC-CGATCTTAGAC-TGGGAATG
* * * * * **
19208506 AACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGTGCTCAACCGACC-GAAGAGGCA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACCGGAAGAGGCA
* ** * * * * * * *
19208570 AAATGCGTAAGGTGGGGATCGGCCAGGT-CCCCCTGCGTGCTGCCGATCCTGCTACCGTAACCTT
66 GAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCT
* * *
19208634 CGCTC-CAGTTCGATCTTAGACT-GGAATG
131 CGGTCTGA-TCCGATCTTAGACTGGGAATG
*
19208662 AACTCCATATGC
1 AACTCCGTATGC
19208674 TTAGACTAGG
Statistics
Matches: 623, Mismatches: 145, Indels: 114
0.71 0.16 0.13
Matches are distributed among these distances:
155 1 0.00
156 60 0.10
157 139 0.22
158 247 0.40
159 7 0.01
160 2 0.00
161 1 0.00
162 2 0.00
165 2 0.00
166 2 0.00
167 2 0.00
168 2 0.00
169 4 0.01
170 37 0.06
171 32 0.05
173 1 0.00
174 2 0.00
176 3 0.00
178 1 0.00
180 2 0.00
181 1 0.00
183 3 0.00
184 68 0.11
185 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACCGGAAGAGGCA
GAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCT
CGGTCTGATCCGATCTTAGACTGGGAATG
Found at i:19208566 original size:656 final size:654
Alignment explanation
Indices: 19206917--19208576 Score: 1915
Period size: 656 Copynumber: 2.5 Consensus size: 654
19206907 GCTCAACCGG
* * * * **
19206917 TCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTACAAATCCTAC
1 TCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACAGATCCCGC
* * * * * * * **
19206982 TGCTAGTCCTGCTACCGCAACCCTCGGTC-CGATCCGATCTTAGAC-TGGGAATGAACTCCGTAT
66 TGC-GGTCCTACTACCACAACCCTCAGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTCCGTAT
* * * * *
19207045 GCCTAAGCCAACCCACAAAATGAGCGTACA-AGTGCTCAACCGGCTGGAGATGCAGAATGCGCAA
128 GCCTAAGCCAACCCACGAAACGAGCGTACAGA-TGCTCAACCGGCCGAAGAGGCAGAATGCGCAA
** * * * * * **
19207109 GTTGGGGACCAGCCCGGTCCCCCCCTGTGTGCTATCGATCCTACTATCGCAACCCTT-GGTCCGG
192 GCCGAGGATCTG-CCGGT-CCCCCCTGCGTGCTGTCGATCCTACTGCCGCAA-CCTTCGGTCCGG
* * * *
19207173 TCTGATCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTAGGGCA
254 -CTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCA
* * * * * *
19207238 CTGAGCCGACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCTTGATCCCTCTCTGCGTGCTGC
318 CTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCTCTCTGCGTGCTAC
*
19207303 CGGTATCGGTGCCACTACCCCCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTAA
383 CGGTATCGGTGCCACAACCCCCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTAA
* * * * *
19207368 GCCAACCCATGAAATGGGAGTGCGAGCGATGAGTCGACCAGGGAGATAGAATGCGCAAGTGGGGG
448 GCCAACCCATGAAATGAGAGTGCGAGCGATGAGTCAACCAGGGAGACAGAATGCGCAAGTCGAGG
* * * * *
19207433 ATAGGCCCGGTCCACTTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTTCGATCTGATCTTA
513 ATAGGCCCGGTCCACTCGCGTGCTGTCGATCCTGATGCCGCAACCCTCGATTCAATCTGATCTTA
* * * *
19207498 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGAGCTCAACCAGC
578 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATACGAGAGCTCAACCAGC
19207563 CGGAGAGGCCGA
643 CGGAGAGGCCGA
* * * * *
19207575 TC-GAGAGGCATAATGGGTAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTGCTGATCCCGC
1 TCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACAGATCCCGC
* * * *
19207639 TGGCGGTCCTACTACCACAACCCTCAGT-TCGGCAGGGGCTTACACATGAAATTAACTCCGTATG
66 T-GCGGTCCTACTACCACAACCCTCAGTCT-GGCTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * * * *
19207703 CCTAAGCCAACCCATGAAACGAGTGTACGGGTGCTCAACCGACCGGAA-AGGCAGAATGCGTAAG
129 CCTAAGCCAACCCACGAAACGAGCGTACAGATGCTCAACCGGCC-GAAGAGGCAGAATGCGCAAG
* * * * * * * *
19207767 CCGAGGATGGTCCCAGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGATCC
193 CCGAGGAT-CTGCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCTTCGGTCCG-GCT
*
19207832 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTG
256 GATCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTG
* * *
19207897 AGCCGATCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGGTCCCTCT-TGCGTGCTACTGG
321 AGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCTCTCTGCGTGCTACCGG
* * *
19207961 TCTCGGTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCC
386 TATCGGTGCCACAACCCCCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCC
* * *
19208026 AACCCATGAAATGAGCGTGCG-G-G-TGA-TCAACCAGCTGGGGAAGCAGAATGCGTAAGTCGAG
451 AACCCATGAAATGAGAGTGCGAGCGATGAGTCAACCAG--GGAG-A-CAGAATGCGCAAGTCGAG
* * *
19208087 GATCGGCCCGGTCCCCTCGCGTGCTGTCGATCCTGATGCTGCAACCCTCGATTCAATCTGATCTT
512 GATAGGCCCGGTCCACTCGCGTGCTGTCGATCCTGATGCCGCAACCCTCGATTCAATCTGATCTT
* * ** * * * * *
19208152 AGACTGGGAATGAACTCTGTTTTTCTAAGTCAACCCACGAAACGAGCATACGAGCGTTCAGCCGG
577 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATACGAGAGCTCAACCAG
*
19208217 TCGGAGAGGCCGA
642 CCGGAGAGGCCGA
* * *
19208230 TCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCCCGC
1 TCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACAGATCCCGC
* *
19208295 TGTCGGTCCTACTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGACCTCCGTATGC
66 TG-CGGTCCTACTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGC
* * *
19208360 CTAAGCCAACCCACGAAACGAGCGTGCAGATGCTCAACCGGCCGAAGAGGTAGAATGCACAAGCC
130 CTAAGCCAACCCACGAAACGAGCGTACAGATGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGCC
* ** * *
19208425 GAGGATCTGCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTTCGGTCCGGCTGGG
195 GAGGATCTGCCGGTCCCCC-CTGCGTGCTGTCGATCCTACTGCCGCAACCTTCGGTCCGGCT-GA
* * * * * * * ** *
19208490 GCTTAGACAT-GAAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGTGCTCA
258 TCTTAGAC-TGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGA
* *
19208554 ACCGACCGAAGAGGCAAAATGCG
322 GCCGACCGAAGAGGCATAATGCG
19208577 TAAGGTGGGG
Statistics
Matches: 834, Mismatches: 148, Indels: 42
0.81 0.14 0.04
Matches are distributed among these distances:
651 7 0.01
652 3 0.00
653 4 0.00
654 2 0.00
655 246 0.29
656 411 0.49
657 153 0.18
658 8 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (654 bp):
TCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACAGATCCCGC
TGCGGTCCTACTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCC
TAAGCCAACCCACGAAACGAGCGTACAGATGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCG
AGGATCTGCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCTTCGGTCCGGCTGATCT
TAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCG
ACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCTCTCTGCGTGCTACCGGTATCG
GTGCCACAACCCCCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCC
ATGAAATGAGAGTGCGAGCGATGAGTCAACCAGGGAGACAGAATGCGCAAGTCGAGGATAGGCCC
GGTCCACTCGCGTGCTGTCGATCCTGATGCCGCAACCCTCGATTCAATCTGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATACGAGAGCTCAACCAGCCGGAGAGG
CCGA
Found at i:19208892 original size:26 final size:26
Alignment explanation
Indices: 19208854--19208906 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19208844 CCAGTCTAAT
* *
19208854 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
19208880 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
19208906 C
1 C
19208907 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:19209078 original size:26 final size:26
Alignment explanation
Indices: 19209037--19209089 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19209027 CTGGTTCGAT
19209037 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19209063 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
19209089 C
1 C
19209090 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19209954 original size:26 final size:26
Alignment explanation
Indices: 19209925--19209977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19209915 CCAGTCTGAT
*
19209925 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
19209951 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
19209977 C
1 C
19209978 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:19210954 original size:26 final size:25
Alignment explanation
Indices: 19210906--19210956 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
19210896 TTGGTCTGAT
*
19210906 CTTAGACTGGGAACGAATTCGTATG
1 CTTAGACTGGGAACGAATCCGTATG
* *
19210931 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAACGAA-TCCGTATG
19210957 ACTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAACGAATCCGTATG
Found at i:19211269 original size:196 final size:196
Alignment explanation
Indices: 19210835--19211583 Score: 855
Period size: 196 Copynumber: 3.8 Consensus size: 196
19210825 CAGAATGCGT
* * ***
19210835 AAGTCGGGGATCAGCCCGGTCCCCCTTGCATGCTGTCGATCCTGCTACCGCAATCCTCGATTTGG
1 AAGTCGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCAG
* *
19210900 TCTGATCTTAGACTGGGAACGAA-TTCGTATGCTTAGACTGGGGATGAACTCCGTATGA-CTAAG
66 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAT-ACCTAAG
* * * * * *
19210963 TCAACCCATGAAACAAGCGTGCGGGTGCTGAGCCGGTCGAAAAGGCCAATCAGAGAGACATAATG
130 TCAACCCATGAAACAAGCATGCGGGCGCTCAGCCGGCCGAAGAGGCC-ATCAGAGAGACAAAATG
19211028 CAC
194 CAC
* * * * * * * *
19211031 ATGCCGAGGATCAACTCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCACAACCCTCCG-TCCA
1 AAGTCGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCT-CGATCCA
* * *
19211095 GTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTAGGGATGAACTCCGTATACCTAAG
65 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAG
* * *
19211160 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCCGATCTGAGAGACAAAATG
130 TCAACCCATGAAACAAGCATGCGGGCGCTCAGCCGGCCGAAGAGGCC-ATCAGAGAGACAAAATG
19211225 CAC
194 CAC
* * * *
19211228 AAGTC-GGGATCAGCCCGGT-CCCCTCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCCA
1 AAGTCGGGGATCAGCCCGGTCCCCCT-TGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCA
* * * * *
19211291 ATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGATTGGGGATGAACTCCGTATGCCTAAG
65 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAG
* * * * * * *
19211356 TGAACCCATGAAACAAGCATGCGGGCACTTAGCCGACC-AGAGAGGCCAGTCGGAGAGGCAGAAT
130 TCAACCCATGAAACAAGCATGCGGGCGCTCAGCCGGCCGA-AGAGGCCA-TCAGAGAGACAAAAT
* *
19211420 ACGC
193 GCAC
* * * *
19211424 AAGTCGGGGATC-GACTCGATCCCCCTTGCGTGCTGTCGATCCTGTTACCGCAACCCTCGATTCA
1 AAGTCGGGGATCAG-CCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCA
* * * * *
19211488 GTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCATATGCCTACG
65 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAG
* * * *
19211553 TCAACCCACGAAACGACCATGCGGGTGCTCA
130 TCAACCCATGAAACAAGCATGCGGGCGCTCA
19211584 ACCGACTAGA
Statistics
Matches: 466, Mismatches: 77, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
195 8 0.02
196 230 0.49
197 223 0.48
198 5 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (196 bp):
AAGTCGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCAG
TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGT
CAACCCATGAAACAAGCATGCGGGCGCTCAGCCGGCCGAAGAGGCCATCAGAGAGACAAAATGCA
C
Found at i:19211327 original size:26 final size:26
Alignment explanation
Indices: 19211298--19211350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19211288 CCAATCCGAT
19211298 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
19211324 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
19211350 C
1 C
19211351 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:19211480 original size:393 final size:393
Alignment explanation
Indices: 19210835--19211583 Score: 966
Period size: 393 Copynumber: 1.9 Consensus size: 393
19210825 CAGAATGCGT
* * ****
19210835 AAGTCGGGGATCAGCCCGGTCCCCCTTGCATGCTGTCGATCCTGCTACCGCAATCCTCGATTTGG
1 AAGTCGGGGATCAGCCCGGTCCCCCTTGCATGCTGTCGATCCTACTACCGCAACCCTCGATCCAA
* * *
19210900 TCTGATCTTAGACTGGGAACGAATTCGTATGCTTAGACTGGGGATGAACTCCGTATGACTAAGTC
66 TCCGATCTTAGACTGGGAACGAATCCGCATGCTTAGACTGGGGATGAACTCCGTATGACTAAGTC
* ** ** * *
19210965 AACCCATGAAACAAGCGTGCGGGTGCTGAGCCGGTCGAAAAGGCCAATCAGAGAGACATAATGCA
131 AACCCATGAAACAAGCATGCGGGCACTGAGCCGACCGAAAAGGCCAATCAGAGAGACAGAATACA
* * *
19211030 CATGCCGAGGATCAACTCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCACAACCCTCCG-TCC
196 CAAGCCGAGGATCAACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCT-CGATCC
* *
19211094 AGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTAGGGATGAACTCCGTATACCTAA
260 AGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATACCTAA
* * *
19211159 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCCGATCTGAGAGACAAAAT
325 GTCAACCCACGAAACGACCATGCGGGCGCTCAGCCGGCCGAAGAGGCCGATCTGAGAGACAAAAT
19211224 GCAC
390 GCAC
* * * *
19211228 AAGTC-GGGATCAGCCCGGT-CCCCTCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCCA
1 AAGTCGGGGATCAGCCCGGTCCCCCT-TGCATGCTGTCGATCCTACTACCGCAACCCTCGATCCA
* * *
19211291 ATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGATTGGGGATGAACTCCGTATGCCTAAG
65 ATCCGATCTTAGACTGGGAACGAA-TCCGCATGCTTAGACTGGGGATGAACTCCGTATGACTAAG
* * * * * *
19211356 TGAACCCATGAAACAAGCATGCGGGCACTTAGCCGACC-AGAGAGGCCAGTCGGAGAGGCAGAAT
129 TCAACCCATGAAACAAGCATGCGGGCACTGAGCCGACCGA-AAAGGCCAATCAGAGAGACAGAAT
* * * * * * *
19211420 ACGCAAGTCGGGGATCGACTCGATCCCCCTTGCGTGCTGTCGATCCTGTTACCGCAACCCTCGAT
193 ACACAAGCCGAGGATCAACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGAT
* * * * * *
19211485 TCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCATATGCCT
258 CCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATACCT
* *
19211550 ACGTCAACCCACGAAACGACCATGCGGGTGCTCA
323 AAGTCAACCCACGAAACGACCATGCGGGCGCTCA
19211584 ACCGACTAGA
Statistics
Matches: 300, Mismatches: 52, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
391 5 0.02
392 67 0.22
393 228 0.76
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (393 bp):
AAGTCGGGGATCAGCCCGGTCCCCCTTGCATGCTGTCGATCCTACTACCGCAACCCTCGATCCAA
TCCGATCTTAGACTGGGAACGAATCCGCATGCTTAGACTGGGGATGAACTCCGTATGACTAAGTC
AACCCATGAAACAAGCATGCGGGCACTGAGCCGACCGAAAAGGCCAATCAGAGAGACAGAATACA
CAAGCCGAGGATCAACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGATCCA
GTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATACCTAAG
TCAACCCACGAAACGACCATGCGGGCGCTCAGCCGGCCGAAGAGGCCGATCTGAGAGACAAAATG
CAC
Found at i:19211546 original size:26 final size:26
Alignment explanation
Indices: 19211495--19211547 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19211485 TCAGTCTGAT
*
19211495 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
19211521 CTTAGACTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
19211547 C
1 C
19211548 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:19213332 original size:159 final size:157
Alignment explanation
Indices: 19212949--19213379 Score: 463
Period size: 159 Copynumber: 2.7 Consensus size: 157
19212939 ACTCCGTATG
* * *
19212949 CTTAGAAATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
19213014 CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCTATCAATCTT
66 CGACCGAAGAGGCAGAATGCGCAAGC-GAGGATCGGCCCGATCCCCCCTGAGTGCTACCAATCCC
* *
19213079 GATGCTGCAACCCTCGGTCTGATCCGAT
130 GATGCCGCAACCCTCGGTCTGATACGAT
* ** * * * *
19213107 CCTAGAC-TGGAAATGAACTCCGTATGTATAAGTCAACCCATGAAACGAGAGTGCGAGCGCTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
19213171 CCGACCGAAGAGGCATAATGCACAAGTCGAGGATCGGCCCGGTCCCCCTCTGAGTGCTACCAGTC
65 CCGACCGAAGAGGCAGAATGCGCAAG-CGAGGATCGGCCCGATCCCCC-CTGAGTGCTACCAATC
* * * * *
19213236 CCGTTGCCGTAACCCTCGGTCTGGCTAGGGT
128 CCGATGCCGCAACCCTCGGTCT-GATACGAT
* * * * * *
19213267 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGGGCGTACGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
19213331 CGACC-AGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGATCCCCCCT
66 CGACCGA-AGAGGCAGAATGCGCAAG-CGAGGATCGGCCCGATCCCCCCT
19213380 ACATGCTACC
Statistics
Matches: 221, Mismatches: 46, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 94 0.43
159 117 0.53
160 7 0.03
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCGAGGATCGGCCCGATCCCCCCTGAGTGCTACCAATCCCG
ATGCCGCAACCCTCGGTCTGATACGAT
Found at i:19213845 original size:158 final size:158
Alignment explanation
Indices: 19213461--19213861 Score: 411
Period size: 158 Copynumber: 2.5 Consensus size: 158
19213451 AACTCCGTAT
** * * *
19213461 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGATGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTGAG
* * * * ***
19213526 TCGACCGGAGAGGCATAATGCGTAATCCGGGGATCGACCCGATCCCCCTTTGTGTGCTGCCAGTC
66 CCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGAT-CCCCTTTACATGCTGCCAGTC
* *
19213591 CCGCTGCCACAACCCTCGGTCTGGTTGGG
130 CCGCTGCCACAACCCTCGATCTGGTTGGA
* * * * * * *
19213620 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCTTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTGAG
* *
19213685 CCGACTGGAGAGGCA-GATGCGCAAGCCGGGGATCGAGCCC-AGT-CCCTTCTACATGCTGTC-G
66 CCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGA-CCCGA-TCCCCTT-TACATGCTGCCAG
* **
19213746 ATCCTGCTGTTACAACCCTCGATCTGGTCT-GA
128 -TCCCGCTGCCACAACCCTCGATCTGGT-TGGA
* * * *
19213778 TCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACAAAATGAGCATGTGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTGA
19213842 GCCGA-TCGGAGAGGCATAAT
65 GCCGACT-GGAGAGGCATAAT
19213862 CTGCAAGTCA
Statistics
Matches: 197, Mismatches: 37, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
157 8 0.04
158 115 0.58
159 74 0.38
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTGAG
CCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCTTTACATGCTGCCAGTCC
CGCTGCCACAACCCTCGATCTGGTTGGA
Found at i:19215028 original size:26 final size:26
Alignment explanation
Indices: 19214990--19215042 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19214980 GGCTCAAAAT
*
19214990 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
19215016 CTTAGAAAT-GGAATGAACTCCATATG
1 CTTAG-AATGGGAATGAACTCCATATG
19215042 C
1 C
19215043 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:19215550 original size:26 final size:26
Alignment explanation
Indices: 19215512--19215564 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19215502 CCGGTCCGAT
19215512 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
19215538 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
19215564 C
1 C
19215565 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19215928 original size:157 final size:158
Alignment explanation
Indices: 19215537--19216004 Score: 457
Period size: 157 Copynumber: 3.0 Consensus size: 158
19215527 AACTCTGTAT
* * * *
19215537 GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGATGAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTGAG
* * * *
19215602 -TCGACCGGAGAGGCAAAATGCGCAAGTC-AGGGATCGACCCGATCCCCCTCTACGTGCTGTCGG
66 CT-GACCGGAGAGGC-AAATGCGCAAGTCGA-GGATCGGCCCGATCCCCCTCTACATGCTGCCGA
* * *
19215665 TCCCGCTGCCACAACCCTCGGTCCGGCTGGG
128 TCCCACTGCCACAACCCTCAGTCCGGCTGGA
* * * *
19215696 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATG-G-GTGTACGGGCGCTC
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGT--GGGCGCT-
* * * * * * *
19215759 AAGC-GGCTGGAGAGGCAGATGCGTAAGTCGAGGATCGGCCCGATCCCTC-CTGCATGCTGCCGA
63 GAGCTGACCGGAGAGGCAAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACATGCTGCCGA
* ** * *
19215822 TCCTACTGTTACAACCTTCAGTCTGGTCT-GA
128 TCCCACTGCCACAACCCTCAGTCCGG-CTGGA
* * *
19215853 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTGA
* * * * * * *
19215917 GCTGACCGGAGAGGCATAATGTGCAAGTCGGGGATCAGCCCGATCCCCCTCAACGTGTTGCCGGT
65 GCTGACCGGAGAGGCA-AATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACATGCTGCCGAT
*
19215982 CCCACTGCCACAACCCTCGGTCC
129 CCCACTGCCACAACCCTCAGTCC
19216005 CAATTTCAGA
Statistics
Matches: 243, Mismatches: 54, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 4 0.02
157 91 0.37
158 57 0.23
159 89 0.37
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTGAG
CTGACCGGAGAGGCAAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACATGCTGCCGATCC
CACTGCCACAACCCTCAGTCCGGCTGGA
Found at i:19216646 original size:159 final size:159
Alignment explanation
Indices: 19216317--19216685 Score: 415
Period size: 159 Copynumber: 2.3 Consensus size: 159
19216307 ACTCCATATG
* * * * ** *
19216317 CTTAGACATGCAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGAGTGTGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGC
* ** * *
19216382 CGATCGGAAGAGCAGAATGCGTAAGCCGGGGATCGACCCGGTCTTCACCTACGTGCTGTCAATCC
66 CGATCGGAAGAGCAGAATACACAAGCCAGGGATCGACCCGGTCCTCACCTACGTGCTGTCAATCC
*
19216447 TGCTGCCACAACCCTCGGTCTGATCCGAT
131 TGCTGCCACAACCCTCGGTCGGATCCGAT
* *
19216476 CTTAGAC-TGGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
* ** ***
19216540 CCGATCGG-AGAGGCATAATACACAAGTTAGGGATCGACCCGGTCCTC-CTCTACGTGCTGTTGG
65 CCGATCGGAAGA-GCAGAATACACAAGCCAGGGATCGACCCGGTCCTCAC-CTACGTGCTGTCAA
* *
19216603 TCC-GCTGCCACAACCCTCGGTCGGA-CTGGGT
128 TCCTGCTGCCACAACCCTCGGTCGGATC-CGAT
* * * * *
19216634 CTTAGACATGGAATGAACTCCCTATGCCTATGTCAACCCATGAAACGAGCGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT
19216686 GTGGGTACTC
Statistics
Matches: 177, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 1 0.01
158 72 0.41
159 104 0.59
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGC
CGATCGGAAGAGCAGAATACACAAGCCAGGGATCGACCCGGTCCTCACCTACGTGCTGTCAATCC
TGCTGCCACAACCCTCGGTCGGATCCGAT
Found at i:19217741 original size:26 final size:26
Alignment explanation
Indices: 19217700--19217752 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19217690 GGCTCAAAAT
*
19217700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
19217726 CTTAGACTAGGG-ATGAACTCCGAATG
1 CTTAGACT-GGGAATGAACTCCGAATG
19217752 C
1 C
19217753 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:19218119 original size:26 final size:26
Alignment explanation
Indices: 19218081--19218133 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19218071 CCAGTCCAAT
19218081 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19218107 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
19218133 C
1 C
19218134 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19218601 original size:158 final size:157
Alignment explanation
Indices: 19218107--19218608 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 157
19218097 ACTCTGTATG
* * *
19218107 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
19218172 CGATTGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCTCCTGCATGCTATCAATCCT
66 CGGTCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCTCCTGCGTGCTATCGATCCT
* ** *
19218237 ACTACTGTAACCCTCAG-TCTGGTCTGAT
131 GCTACCATAACCCTCGGTTC-GGTCT-AT
* * * * *
19218265 CTTAGAC-TGGGAATGAACTTCATATGCCTAAGT-CAACCCATGAAATGAGTGTGCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAA-TCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * *
19218328 G-CCGACCAGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTTGG
64 GTCGGTCGA-AGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCTC-CTGCGTGCTATCGA
* * * * **
19218392 TCCTGCTGCCACAACCCTCGATTTGGT-TGGGG
127 TCCTGCTACCATAACCCTCGGTTCGGTCT--AT
* * * *
19218424 CTTAGACATGGAATGAACTCCCTATGCCTAATCCAAGCCACGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * *
19218489 CGGTCGAAGAGGCAGAATGCACAAGCCGGGGATTGGCTCGGTCCCTCCTGCGTGCTATCGATCCT
66 CGGTCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCTCCTGCGTGCTATCGATCCT
19218554 GCTACCATAACCCTCGGTTCGGTCCTAT
131 GCTACCATAACCCTCGGTTCGGT-CTAT
19218582 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
19218609 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 63, Indels: 24
0.76 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 148 0.55
159 111 0.41
160 7 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGGTCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCTCCTGCGTGCTATCGATCCT
GCTACCATAACCCTCGGTTCGGTCTAT
Found at i:19218618 original size:26 final size:26
Alignment explanation
Indices: 19218582--19218634 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19218572 TCGGTCCTAT
19218582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19218608 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19218634 C
1 C
19218635 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19219598 original size:26 final size:26
Alignment explanation
Indices: 19219569--19219621 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19219559 CTGGTCTGAT
*
19219569 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19219595 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19219621 C
1 C
19219622 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19225481 original size:26 final size:26
Alignment explanation
Indices: 19225452--19225502 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19225442 CCGATTTGAT
**
19225452 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACAAGGAATGAACTCCGTATA
19225478 CTTAGACAAGGAATGAACTCCGTAT
1 CTTAGACAAGGAATGAACTCCGTAT
19225503 GTCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATA
Found at i:19226357 original size:26 final size:26
Alignment explanation
Indices: 19226317--19226369 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19226307 CTGGTCTGAT
19226317 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
19226343 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCATATG
19226369 C
1 C
19226370 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:19227081 original size:499 final size:507
Alignment explanation
Indices: 19226121--19227086 Score: 1084
Period size: 499 Copynumber: 1.9 Consensus size: 507
19226111 CCAGTCTTGC
* *
19226121 TGCCACAACCCTCGGTCCACCTGGGGCTTGGACATGGAATGAACTCCGTATACCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCACCTGGGGCTTGGACATGGAATGAACTCCCTACACCTAAGCCAACCC
** * ** * * **
19226186 ATGAAATGAGCTTGCGGGCGCTCAGCCGGTTAGAGAGGTAGAATGCGTAAATCGGGGATCGACGT
66 ACAAAATGAGCTTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAATCGGGGATAGACCC
* * * *
19226251 GGTCCCCCTTGCGTGATACCGATCCTGCTACTGGTCCTGCTGCCAGAACCCTCGATCTGGTCTGA
131 GGTCCCCCCTACGTGATACCGATCC-GCTACTGG--CTGCTGCCA-AACCCTCGATCTAGTCCGA
19226316 TCTTAGACTGGCAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
192 TCTTAGACTGGCAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
19226381 TACAAAACGAGTGTGCGGGCAGACAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGGTAGACC
257 CACAAAACGAGCGTACGGGCACACAACCGGTCAGAAAGGCAGAATGCACAAGCCGGGGATAGACC
* * * * * * * *
19226446 AGTTCCCCCCTTGCGTGCTGTCAATCTGGTCGTCGCAACCCTTGGTTCGGGCCAATCTTAGACTG
322 AGATCCCCCCCTGCGTACTATCAATCTGCTCGCCGCAACCCTCGGTCCGGGCCAATCTTAGACTG
* * *
19226511 GGAATGAACTCTGTATGCCTAAGTCAACCTACGAAATGAGCGTGTGGGCGCTGTGCCGACCGAAA
387 GGAATAAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGTGTGGGCGCTGAGCCGACCGAAA
19226576 AGGCATAATGCACAAATCGGGGATCGCCCGACCCCTCTCCATGCCGTCGGTCCCAT
452 AGGCATAATGCACAAATCGGGGATCGCCCGACCCCTCTCCATGCCGTCGGTCCCAT
* *
19226632 TGCCACAACCCTCGGTCCGA-CTGGGGCTTTGACATGGAATGAACTCCCTACGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCC-ACCTGGGGCTTGGACATGGAATGAACTCCCTACACCTAAGCCAACC
* * *
19226696 CACAAAATG-GGTGTACGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAA-CTGGGGATTAG
65 CACAAAATGAGCT-TACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAATC-GGGGA-TAG
* * *
19226759 -CCCGGTCCCCCCTACGTGCTACCGAT-C-CTACT-G-T-C-G-C-AACCCTTGGTCTAGTCCGA
127 ACCCGGTCCCCCCTACGTGATACCGATCCGCTACTGGCTGCTGCCAAACCCTCGATCTAGTCCGA
* ** * * ** * *
19226815 TCTTAGACTGGGAATGAACTCGGTATGTTTAGA-TTGGGGTTGAGCTTCGTATGCCTAAGCCAAC
192 TCTTAGACTGGCAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
19226879 CCACGAAACGAGCGTACGGGCACTCAGCCGGTCAGAAAGGCTGAATGCACAAGCTGGGGATCGAC
256 CCACAAAACGAGCGTACGGGCACACAACCGGTCAGAAAGGCAGAATGCACAAGCCGGGGATAGAC
* * * ****
19226944 CCGATCCCCCCCTGTGTACTATCGATCCTGCT-GCCGCAACCCTCGGTCCGGTTGGATCTTAGAC
321 CAGATCCCCCCCTGCGTACTATCAAT-CTGCTCGCCGCAACCCTCGGTCCGGGCCAATCTTAGAC
* *
19227008 TGGGAATAAACTCCGTATG-CTGAAGTCAATCC-ACGAAATGAGCGT-TCGGGCGTTGAGCCGAT
385 TGGGAATAAACTCCGTATGCCT-AAGTCAA-CCTACGAAATGAGCGTGT-GGGCGCTGAGCCGAC
* *
19227070 TGAAGAGGCATAATGCA
447 CGAAAAGGCATAATGCA
19227087 TAAGCCGAGG
Statistics
Matches: 378, Mismatches: 68, Indels: 30
0.79 0.14 0.06
Matches are distributed among these distances:
498 4 0.01
499 227 0.60
500 6 0.02
501 1 0.00
502 1 0.00
503 1 0.00
504 1 0.00
507 1 0.00
508 5 0.01
510 4 0.01
511 124 0.33
512 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (507 bp):
TGCCACAACCCTCGGTCCACCTGGGGCTTGGACATGGAATGAACTCCCTACACCTAAGCCAACCC
ACAAAATGAGCTTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAATCGGGGATAGACCC
GGTCCCCCCTACGTGATACCGATCCGCTACTGGCTGCTGCCAAACCCTCGATCTAGTCCGATCTT
AGACTGGCAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA
AAACGAGCGTACGGGCACACAACCGGTCAGAAAGGCAGAATGCACAAGCCGGGGATAGACCAGAT
CCCCCCCTGCGTACTATCAATCTGCTCGCCGCAACCCTCGGTCCGGGCCAATCTTAGACTGGGAA
TAAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGTGTGGGCGCTGAGCCGACCGAAAAGGC
ATAATGCACAAATCGGGGATCGCCCGACCCCTCTCCATGCCGTCGGTCCCAT
Found at i:19228068 original size:26 final size:26
Alignment explanation
Indices: 19228039--19228091 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19228029 TTGATTCGAT
19228039 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
19228065 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
19228091 C
1 C
19228092 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:19228366 original size:26 final size:26
Alignment explanation
Indices: 19228330--19228382 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19228320 CCGATTCGAT
19228330 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19228356 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19228382 C
1 C
19228383 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19228557 original size:26 final size:26
Alignment explanation
Indices: 19228527--19228579 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19228517 CCGGTCTGAT
*
19228527 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
19228553 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
19228579 C
1 C
19228580 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:19229062 original size:26 final size:26
Alignment explanation
Indices: 19229026--19229078 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19229016 CTGGTTCAGT
19229026 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19229052 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19229078 C
1 C
19229079 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19229579 original size:154 final size:154
Alignment explanation
Indices: 19229248--19229585 Score: 362
Period size: 154 Copynumber: 2.2 Consensus size: 154
19229238 ACTCCATATA
* * * * * *
19229248 CTTAGACATGGGATGAACTCCGTATGCCTAAGGCAACGCACGAAAC-GAATGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCCTATG---AAGCCAACCCACGAAACGGCA--TGCGGGCGCTCAG
* * *
19229312 TCGATCGGAGAGGCAGAATGAACAAGTCGGGGACCGACCTGGTCCCCCCTGCGTTCTGTCGATCC
61 CCGATCGGAGAGGCAGAATGAACAAGTCGGGGACCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
19229377 TACTACGACAACCCTCGGTCTAGCTGGGG
126 TACTACGACAACCCTCGATCCAGCTGGAG
19229406 CTTAGACATGGAATGAACTCCCTATGAAGCCAACCCACGAAACGGCATGCGGGCGCTCAGCCGAT
1 CTTAGACATGGAATGAACTCCCTATGAAGCCAACCCACGAAACGGCATGCGGGCGCTCAGCCGAT
*** * * *
19229471 CGGAGAGGCAGAATGCGTAAG-CTGGGGATCGACCCGGTCCCCCCTGGGTGCTGTCGATCCTGCT
66 CGGAGAGGCAGAATGAACAAGTC-GGGGACCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACT
* * *
19229535 ACCG-TAACCCTCGATCCGGTCT-GAT
130 A-CGACAACCCTCGATCCAG-CTGGAG
*
19229560 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
19229586 CTTAGACTGG
Statistics
Matches: 153, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
153 2 0.01
154 106 0.69
155 19 0.12
156 2 0.01
158 24 0.16
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCCTATGAAGCCAACCCACGAAACGGCATGCGGGCGCTCAGCCGAT
CGGAGAGGCAGAATGAACAAGTCGGGGACCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTA
CGACAACCCTCGATCCAGCTGGAG
Found at i:19229589 original size:26 final size:26
Alignment explanation
Indices: 19229560--19229612 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19229550 CCGGTCTGAT
19229560 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19229586 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19229612 C
1 C
19229613 CTAATTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19229926 original size:354 final size:338
Alignment explanation
Indices: 19229220--19229940 Score: 838
Period size: 354 Copynumber: 2.1 Consensus size: 338
19229210 GTCCAGTCTG
* *
19229220 ATCTTAGACTGGGAATGAACTCCATATACTTAGACATGGGATGAACTCCGTATGCCTAAGGCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGGATGAACTCCGTATGCCTAAGGCAAC
* * * ** * * * *
19229285 GCACGAAACGAATGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGAACAAGTCGGGGACCGAC
66 GCACGAAACGAACGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGAACAAGCCGGGGACCAAC
* * *
19229350 CTGGTCCCCCCTGCGTTCTGTCGATCCTACTACGACAACCCTCGGTCTAGCTGGGGCTTAGACAT
131 CCGGTCCCCCCTGCGTTCTGTCGATCCTACTACCACAACCCTCGGTCTAGCTAGGGCTTAGACAT
*
19229415 GGAATGAACTCCCTATGAAGCCAACCCACGAAACGGCATGCGGGCGCTCAGCCGATCGGAGAGGC
196 GGAATGAACTCCCTATGAAGCCAACCCACGAAACGGCATGCGGGCGCTCAACCGATCGGAGAGGC
* * * *** * *
19229480 AGAATGCGTAAGCTGGGGATCGACCCGGTCCCCCCTGGGTGCTGTCGATCCTGCTACCGTAACCC
261 AGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTACTACCATAACCC
* * *
19229545 TCGATCCGGTCTG
326 TCAATCCGATCTA
**
19229558 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAATTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGGATGAACTCCGTATGCCTAAGGC-A
* * * *
19229622 AC-CACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCATAATGAGCAAGCCGGGGATCA
64 ACGCACGAAACGAACGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGAACAAGCCGGGGACCA
* * * *
19229686 ACCCGGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCGGTCCTTCTGCCACAACCCTCGGTCTGG
129 ACCCGGT--CCC-C--C---CTG-CG-T--T-CTGTCGATCCTACTACCACAACCCTCGGTCTAG
* * *
19229751 CTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCG
181 CTAGGGCTTAGACATGGAATGAACTCCCTATG---AAGCCAACCCACGAAACG-GCATGCGGGCG
* * *
19229816 CTCAACCGA-CGTAGAGGCAGAATGCGCAAGCCGAGGATC-AGCCCGGTTCCCCCTACATGTTGT
242 CTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCCCCTACATGCTGT
* *
19229879 TGATCCTACTACCATAACCCTCAATCTGATCTA
306 CGATCCTACTACCATAACCCTCAATCCGATCTA
19229912 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
19229941 CTAAGTCAAC
Statistics
Matches: 319, Mismatches: 44, Indels: 24
0.82 0.11 0.06
Matches are distributed among these distances:
337 1 0.00
338 111 0.35
339 3 0.01
340 3 0.01
341 1 0.00
343 1 0.00
346 3 0.01
347 2 0.01
348 1 0.00
350 1 0.00
351 58 0.18
353 1 0.00
354 115 0.36
355 18 0.06
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (338 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGGATGAACTCCGTATGCCTAAGGCAAC
GCACGAAACGAACGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGAACAAGCCGGGGACCAAC
CCGGTCCCCCCTGCGTTCTGTCGATCCTACTACCACAACCCTCGGTCTAGCTAGGGCTTAGACAT
GGAATGAACTCCCTATGAAGCCAACCCACGAAACGGCATGCGGGCGCTCAACCGATCGGAGAGGC
AGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTACTACCATAACCC
TCAATCCGATCTA
Found at i:19230270 original size:26 final size:26
Alignment explanation
Indices: 19230229--19230281 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19230219 TCGTTTCGAT
19230229 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
19230255 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19230281 C
1 C
19230282 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19230646 original size:26 final size:26
Alignment explanation
Indices: 19230608--19230660 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19230598 CCGGTTTGAT
19230608 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19230634 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19230660 C
1 C
19230661 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19232795 original size:159 final size:159
Alignment explanation
Indices: 19232506--19232801 Score: 373
Period size: 159 Copynumber: 1.9 Consensus size: 159
19232496 AACTCTGTAT
** *
19232506 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAATGAGCTTCCGGATGTCTAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCATCCGGATGTCTAG
* * *
19232571 CTGGCCGGAAAGACAGAATGCACAAGTTGAGGACCGACCCGATCCCCATCTACGTGCTGTCGATC
66 CCGGCCGGAAAGACAGAATGCACAAGTGGAGGACCGACCCGATCCCCATCTACGTGCTGCCGATC
19232636 CTACTACCACAACACTCGGTCTGGCTGGG
131 CTACTACCACAACACTCGGTCTGGCTGGG
* * * * *
19232665 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTG-CTCA
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCATCCGGATGTCT-A
* * ** * * * *
19232729 GCCGGCCGGAGAGGCAGAATGCACAAGTCGGA-GATTGGCCTGGTCACCCCT-TACGTGCTGCCG
65 GCCGGCCGGAAAGACAGAATGCACAAGT-GGAGGACCGACCCGATC-CCCATCTACGTGCTGCCG
19232792 ATCCTACTAC
128 ATCCTACTAC
19232802 TGGTCCTACT
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
158 2 0.02
159 107 0.93
160 6 0.05
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCATCCGGATGTCTAG
CCGGCCGGAAAGACAGAATGCACAAGTGGAGGACCGACCCGATCCCCATCTACGTGCTGCCGATC
CTACTACCACAACACTCGGTCTGGCTGGG
Found at i:19233286 original size:159 final size:157
Alignment explanation
Indices: 19232862--19233289 Score: 414
Period size: 159 Copynumber: 2.7 Consensus size: 157
19232852 AACTTCGTAC
* * * * * *
19232862 GCTTAGACACGGAACGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
* * * * * *
19232927 CTGACCGAAGAGGCAGAATGCATAAGTCGAGGACCAGCCCGGTCCCCCCTACATGCTGTCGATCC
66 CTGACCG-AGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTATCGATCC
* * * *
19232992 TGTTGCCACAACCCTCGGTCTGGTCTGA
130 CGTTACCACAACCCTCGATCCGGTCTGA
* * * * * * *
19233020 TCTTAGAC-TGCGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCT-TACGGGCGCTG
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GGTGTGCGGGCGCTC
* * * * * * ** * *
19233083 AGCCGATCGGAGAGGCATAATACGCAAGCTGGGGATC-GACCCGATCCTCCTTTGCGTGCTATCG
64 AGCTGA-CCGAGAGGCAGAATGCACAAGCCGGGGATCAG-CCCGATCC-CCCCTACATGCTATCG
* *
19233147 GTCCCGTTACCACAACCCTCGATCCGG-CTGGG
126 ATCCCGTTACCACAACCCTCGATCCGGTCT-GA
* *
19233179 GCTTAGACATGGAATGAACTCCCTTTGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
*
19233244 CTGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCC
66 CTGACC-GAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCC
19233290 TCTTACGTGC
Statistics
Matches: 209, Mismatches: 51, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 84 0.40
159 120 0.57
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
CTGACCGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTATCGATCCC
GTTACCACAACCCTCGATCCGGTCTGA
Found at i:19234101 original size:26 final size:25
Alignment explanation
Indices: 19234072--19234125 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 25
19234062 GCTCAAACTT
*
19234072 TTAGACATGGAATGAACTCCATATGC
1 TTAGACATAGAATGAACTCC-TATGC
19234098 TTAGACATAGAATGAACTCCTATGC
1 TTAGACATAGAATGAACTCCTATGC
19234123 TTA
1 TTA
19234126 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (25 bp):
TTAGACATAGAATGAACTCCTATGC
Found at i:19235385 original size:26 final size:26
Alignment explanation
Indices: 19235347--19235399 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19235337 CTGATCTGAT
19235347 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
19235373 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
19235399 C
1 C
19235400 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:19236527 original size:158 final size:159
Alignment explanation
Indices: 19236206--19236540 Score: 383
Period size: 158 Copynumber: 2.1 Consensus size: 159
19236196 CCTGCTGCTA
* * * *
19236206 GGAATGAAGTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGTGGGCACTGAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGGTCGGAG
* *
19236271 AGGCATAATGCGTAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTACCAGTCCCGCTACCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTACCAGTCCCGCTACCAC
* * *
19236336 AACACTCGATTCGGTTGGGGCTTAGACAT
131 AACACTCGATCCGGTTGAGGCTGAGACAT
* ** **
19236365 GGAATGAACTCCCTATGCCTAAG-CAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGGTCGGAG
* * * ** * * *
19236429 AGGCAGAATGTGCAAGTCGGGGATCGGCTCGGTCCCCC-CTGCGTGCTGCC-GATCCTGCTACCG
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTACCAG-TCCCGCTACCA
* *
19236492 CAACCCTTCGATCCGGTCTGATG-TGAGAC-T
130 CAACAC-TCGATCCGGT-TGAGGCTGAGACAT
19236522 GGGAATGAACTCCGTATGC
1 -GGAATGAACTCCGTATGC
19236541 TTAGACTGGG
Statistics
Matches: 147, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
156 1 0.01
157 26 0.18
158 96 0.65
159 24 0.16
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGGTCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTACCAGTCCCGCTACCAC
AACACTCGATCCGGTTGAGGCTGAGACAT
Found at i:19236546 original size:26 final size:26
Alignment explanation
Indices: 19236517--19236566 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19236507 GTCTGATGTG
*
19236517 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAAATCCGTATGCTT
* *
19236543 AGACTGGGGATGAAATCTGTATGC
1 AGACTGGGAATGAAATCCGTATGC
19236567 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAAATCCGTATGCTT
Found at i:19237277 original size:26 final size:26
Alignment explanation
Indices: 19237248--19237324 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
19237238 GCTCAAACTT
19237248 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
*
19237274 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
19237300 TTAGACATGGAATGAACTCC-TATGC
1 TTAGACATGGAATGAACTCCGTATGC
19237325 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 5 0.10
26 44 0.90
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:19238162 original size:26 final size:26
Alignment explanation
Indices: 19238106--19238164 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
19238096 CTCCATCCGG
**
19238106 TCTG-ATG-TTAGACTGGGAATGAGC
1 TCTGTATGCTTAGACTGGGAATGAAA
* *
19238130 TCCGTATGCTTAGACTGGGGATGAAA
1 TCTGTATGCTTAGACTGGGAATGAAA
19238156 TCTGTATGC
1 TCTGTATGC
19238165 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 3 0.11
25 3 0.11
26 22 0.79
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.31
Consensus pattern (26 bp):
TCTGTATGCTTAGACTGGGAATGAAA
Found at i:19238875 original size:26 final size:26
Alignment explanation
Indices: 19238846--19238922 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
19238836 GCTCAAACTT
19238846 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
*
19238872 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
19238898 TTAGACATGGAATGAACTCC-TATGC
1 TTAGACATGGAATGAACTCCGTATGC
19238923 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 5 0.10
26 44 0.90
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:19239565 original size:355 final size:354
Alignment explanation
Indices: 19238880--19239567 Score: 726
Period size: 355 Copynumber: 1.9 Consensus size: 354
19238870 GCTTAGACAT
** *
19238880 GGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAG
1 GGAATGAACTCCATATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAG
* ** *** * *
19238945 CGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTAGTCCCCCTC
66 CGTACGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCTAAAGACCGACCTAGTCCCCCTC
* ** * *
19239010 TGTGTGCTATCGGTTACACTACCACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTC
131 TGCGTGCTATCGAATACACTACCACAACCCTCGGTCAGACTAGAGCTTAGACATGGAATGAACTC
* * * * * * * * * * *
19239075 CCTATGCCTAAGCCAACCCGCGAAACAGGCGTCTGGGCGCTTAGTCGGTCGGAGGGCAGAATGCG
196 CCTATGCCAAAGCCAACCCACGAAACAGACGTATGGACGCTGAGCCAGCCAGAGGGCAGAATGCA
* * * * * **
19239140 TAAGCCGGGGATCGGCCCTGTCCCCCACAGTGTGTTGTCGATCCTACTACTGGTCCTACTACTGC
261 TAAGCCGGGGATCGGCCCTGTCCCCCACAGTATGCTGCCGATCCCACTACCGGTCCTACTACCAC
19239205 AACCCTCGGCCCTATCCGATCTTAGCCTG
326 AACCCTCGGCCCTATCCGATCTTAGCCTG
19239234 GGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
1 GGAATGAACTCCATATGCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGA
* * *
19239299 GCGTGCGGGCGCTCAGCCGACCTAAGAGGCAGAATGCACAAG-TCAAAGACCGACCTGGTCCCCC
65 GCGTACGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCT-AAAGACCGACCTAGTCCCCC
* * * * *
19239363 -CTGCGTGCTGTC-AATCCTGCTACCACAACCCTCGGTCCAGTCT-GATCTTAGAC-TGGGAATG
129 TCTGCGTGCTATCGAATAC-ACTACCACAACCCTCGGT-CAGACTAGAGCTTAGACAT-GGAATG
* * * ** * *
19239424 AACTCCGTATGCCAAAGTCAACCCACGAAATGAGATTTAT-GATGCTGAGCCAGCCAGAGAGGTA
191 AACTCCCTATGCCAAAGCCAACCCACGAAA-CAGACGTATGGACGCTGAGCCAGCCAGAG-GGCA
* * * * * *
19239488 TAATGCATAAGCCGGGGATTGGCTC-GATCCCCCTC-TTCATGCTGCCGATCCCGCTACCGGTCC
254 GAATGCATAAGCCGGGGATCGGCCCTG-TCCCCCACAGT-ATGCTGCCGATCCCACTACCGGTCC
* *
19239551 TCCTGCCACAACCCTCG
317 TACTACCACAACCCTCG
19239568 ATCCGATTGG
Statistics
Matches: 268, Mismatches: 57, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
353 3 0.01
354 118 0.44
355 147 0.55
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (354 bp):
GGAATGAACTCCATATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAG
CGTACGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCTAAAGACCGACCTAGTCCCCCTC
TGCGTGCTATCGAATACACTACCACAACCCTCGGTCAGACTAGAGCTTAGACATGGAATGAACTC
CCTATGCCAAAGCCAACCCACGAAACAGACGTATGGACGCTGAGCCAGCCAGAGGGCAGAATGCA
TAAGCCGGGGATCGGCCCTGTCCCCCACAGTATGCTGCCGATCCCACTACCGGTCCTACTACCAC
AACCCTCGGCCCTATCCGATCTTAGCCTG
Found at i:19240090 original size:26 final size:26
Alignment explanation
Indices: 19240034--19240092 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
19240024 CTCCATCCGG
**
19240034 TCTG-ATG-TTAGACTGGGAATGAGC
1 TCTGTATGCTTAGACTGGGAATGAAA
* *
19240058 TCCGTATGCTTAGACTGGGGATGAAA
1 TCTGTATGCTTAGACTGGGAATGAAA
19240084 TCTGTATGC
1 TCTGTATGC
19240093 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 3 0.11
25 3 0.11
26 22 0.79
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.31
Consensus pattern (26 bp):
TCTGTATGCTTAGACTGGGAATGAAA
Found at i:19240804 original size:26 final size:26
Alignment explanation
Indices: 19240766--19240818 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19240756 GGCTCAAACT
19240766 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19240792 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
19240818 C
1 C
19240819 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19241144 original size:26 final size:26
Alignment explanation
Indices: 19241108--19241157 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19241098 CCAGTTAGAT
*
19241108 CTTAGACTGGGGATGAACTCCGTAAG
1 CTTAGACTGGGGATAAACTCCGTAAG
19241134 CTTAGACTGGGGATAAACTCCGTA
1 CTTAGACTGGGGATAAACTCCGTA
19241158 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTCCGTAAG
Found at i:19241342 original size:25 final size:26
Alignment explanation
Indices: 19241305--19241356 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
19241295 CTGGTCCGAT
19241305 CTTAGACTGGGAAT-AACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19241330 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19241356 C
1 C
19241357 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19241835 original size:26 final size:26
Alignment explanation
Indices: 19241806--19241859 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
19241796 AATTTGATCT
19241806 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
19241832 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
19241858 TA
1 TA
19241860 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:19242221 original size:26 final size:26
Alignment explanation
Indices: 19242183--19242235 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19242173 CCGGTTTGAT
* *
19242183 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19242209 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
19242235 C
1 C
19242236 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19242403 original size:26 final size:26
Alignment explanation
Indices: 19242367--19242419 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19242357 CTAGTCTGAT
19242367 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
19242393 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
19242419 C
1 C
19242420 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:19243129 original size:26 final size:26
Alignment explanation
Indices: 19243091--19243143 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19243081 GGCTCAAACT
19243091 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19243117 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19243143 C
1 C
19243144 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19243474 original size:26 final size:26
Alignment explanation
Indices: 19243433--19243485 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19243423 TCGGTCTGAT
19243433 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19243459 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
19243485 C
1 C
19243486 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19244207 original size:26 final size:26
Alignment explanation
Indices: 19244169--19244221 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19244159 GGCTCAAACT
19244169 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19244195 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19244221 C
1 C
19244222 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19245282 original size:26 final size:26
Alignment explanation
Indices: 19245253--19245320 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
19245243 TTAGACTGGG
**
19245253 AATGAACTTTGTATGCTTAGACATAA
1 AATGAACTCCGTATGCTTAGACATAA
**
19245279 AATGAACTCCGTATGCTTAGACATGG
1 AATGAACTCCGTATGCTTAGACATAA
19245305 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
19245321 CTAAGCCAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (26 bp):
AATGAACTCCGTATGCTTAGACATAA
Found at i:19245662 original size:26 final size:26
Alignment explanation
Indices: 19245611--19245663 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19245601 CCGGTCTGAT
*
19245611 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19245637 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
19245663 C
1 C
19245664 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19246388 original size:26 final size:25
Alignment explanation
Indices: 19246347--19246398 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19246337 CTAGTCTGAT
*
19246347 CTTAGACTGGAGTGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
19246372 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
19246398 C
1 C
19246399 CAAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:19246559 original size:26 final size:26
Alignment explanation
Indices: 19246522--19246572 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19246512 GCTCAAACTC
19246522 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
19246548 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
19246573 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:19246561 original size:175 final size:169
Alignment explanation
Indices: 19246204--19246669 Score: 531
Period size: 175 Copynumber: 2.7 Consensus size: 169
19246194 CAGCTGGGGC
* * *
19246204 TTAGACGTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
* * ** * * * *
19246269 GGCTGGAGAGGCAG-ATGCATAAGCTGAGGATCGG-CTCAGTCCCCCCCTGCATGCTAACGATCT
66 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGT-CCCCCCTGCATGCTAACGATCC
** * *
19246332 TGCTGCTAGTCTGATCTTAGACTGGAGTGAACTCCGTATGC
129 TGCTGCTAGTCAAATCTTAGACTGGAATGAACTCCGTATGA
* * * * * * *
19246373 TTAGACATGGAATGAACTCCGTATGCCAAAGCTAACCCATGAAACTAGCATGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
* * **
19246438 GACCGGTGAGGCAGAATGCGCAAGCCGGGGACCGGCCTGGTCCCACCCTGCATGCTGTCGATCCT
66 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCC-CCCTGCATGCTAACGATCCT
19246503 GCTGCCGTAGCTCAAACTCTTAGACTGGGAATGAACTCCGTATGA
130 GCTG-C-TAG-TCAAA-TCTTAGACT-GGAATGAACTCCGTATGA
* *
19246548 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGAGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
* * * * * *
19246613 GATCGAAGAGGTAAAATGCGCAAGCCGGGGATTGGCCTGATCCCCCTCTGCATGCTA
66 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCC-CTGCATGCTA
19246670 CTGGTCCCGC
Statistics
Matches: 244, Mismatches: 44, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
169 69 0.28
170 38 0.16
171 3 0.01
172 3 0.01
173 3 0.01
174 11 0.05
175 117 0.48
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.20
Consensus pattern (169 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCATGCTAACGATCCTG
CTGCTAGTCAAATCTTAGACTGGAATGAACTCCGTATGA
Found at i:19246842 original size:26 final size:26
Alignment explanation
Indices: 19246813--19246865 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19246803 CCAGTTCGAT
*
19246813 CTTAGACTTGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
19246839 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19246865 C
1 C
19246866 CTAATTGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19247365 original size:159 final size:158
Alignment explanation
Indices: 19246987--19247442 Score: 434
Period size: 158 Copynumber: 2.9 Consensus size: 158
19246977 GTCCTACTGC
* * * * * *
19246987 CGCAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCCAAGCCAACACATG
1 CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCACG
* * *
19247052 AAACGAGCGTGTGGGTGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGAT
66 AAACGAGCGTGTGGGTGCTCAACCGACCGGAGAAGCAGAATGCACAAGCCGGGGACCGACCCGAT
* ***
19247117 CCCCCCTGCGTGCTGTCGATCTTGCTAT
131 CCCCCCTGAGTGCTGTCGATCCCACTAT
* * *
19247145 CGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG-TCAACCCAC
1 CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCT-AACCCAC
* * ** * * *
19247209 GAAATGAGCGT-TCGGGTGCTGAGTCGGCCGGAGAAGCATAATGCACAAGCCGGGGATCGACCCG
65 GAAACGAGCGTGT-GGGTGCTCAACCGACCGGAGAAGCAGAATGCACAAGCCGGGGACCGACCCG
* *
19247273 ATCCCCCTCTGAGTGCTGTCGGTCCCACTGT
129 ATCCCCC-CTGAGTGCTGTCGATCCCACTAT
* *
19247304 -GACAACCCTCAGTCCGG-CTGGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCC
1 CG-CAACCCTCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCTAACCC
* * * * * *
19247366 ACG----G-GCGTGCGGGCT-CTCAGCCGATCGGAGAGGCAGAATG-AGCAAGCCGGGGATCGGC
63 ACGAAACGAGCGTGTGGG-TGCTCAACCGACCGGAGAAGCAGAATGCA-CAAGCCGGGGACCGAC
* *
19247424 CCGAT-TCCCCTGCGTGCTG
126 CCGATCCCCCCTGAGTGCTG
19247443 CCATAACCCT
Statistics
Matches: 248, Mismatches: 40, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
152 9 0.04
153 4 0.02
154 46 0.19
155 2 0.01
157 1 0.00
158 116 0.47
159 68 0.27
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCACG
AAACGAGCGTGTGGGTGCTCAACCGACCGGAGAAGCAGAATGCACAAGCCGGGGACCGACCCGAT
CCCCCCTGAGTGCTGTCGATCCCACTAT
Found at i:19247727 original size:26 final size:26
Alignment explanation
Indices: 19247677--19247729 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19247667 CCGAGCCGAT
*
19247677 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTACGTATG
*
19247703 CTTAGACAT-GGAATGAACTATGTATG
1 CTTAGA-ATGGGAATGAACTACGTATG
19247729 C
1 C
19247730 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTACGTATG
Found at i:19247993 original size:157 final size:157
Alignment explanation
Indices: 19247712--19248001 Score: 343
Period size: 157 Copynumber: 1.8 Consensus size: 157
19247702 GCTTAGACAT
* *
19247712 GGAATGAACTATGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGAAG
1 GGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGGTCGAAG
* * * *
19247777 AGGCAGAATGCGTAAGTCAAGGATCGACCCGATCCCCCTGCATGCTATCGATCCTGCTGCCGCAA
66 AGGCAGAATGCGCAAGTCAAGGATCGACCCGATCCCCCTGCATGCTACCGATCCCGCTGCCACAA
19247842 CCCTCGGTCTGGTCCAATGTTAGATTG
131 CCCTCGGTCTGGTCCAATGTTAGATTG
* * * ** ** * *
19247869 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT-TTGGCGTTGAGCCGGTCGGAG
1 GGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGGTCGAAG
* * ** * *
19247933 AGGCATAAT-CGCAAGTCGAGGATC-AGCTTGGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCA
66 AGGCAGAATGCGCAAGTCAAGGATCGA-CCCGAT-CCCC-CTGCATGCTACCGATCCCGCTGCCA
19247996 CAACCC
128 CAACCC
19248002 CCAGTCCGAC
Statistics
Matches: 109, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
154 1 0.01
155 16 0.15
156 27 0.25
157 65 0.60
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGGTCGAAG
AGGCAGAATGCGCAAGTCAAGGATCGACCCGATCCCCCTGCATGCTACCGATCCCGCTGCCACAA
CCCTCGGTCTGGTCCAATGTTAGATTG
Found at i:19248227 original size:26 final size:26
Alignment explanation
Indices: 19248175--19248227 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
19248165 CTGGTCCGAT
* * *
19248175 CTTAGACTAGGAATTAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
**
19248201 CTTAGACTAGGGGTGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
19248227 C
1 C
19248228 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:19248400 original size:708 final size:691
Alignment explanation
Indices: 19247019--19248403 Score: 1470
Period size: 708 Copynumber: 2.0 Consensus size: 691
19247009 TCTTAGATTG
* * ** *
19247019 GGAATGAACTTCGTATGCCCAAGCCAACACATGAAACGAGCGTGTGGGTGCTCAACCGATCGGAG
1 GGAATGAACTTCGTATGCCCAAGCCAACACACGAAACGAGCGTGCGGGCACTCAACCGATCGAAG
** * * * * *
19247084 AGGCAGAATGCACAAGCCGGGGACCGGCCCGATCCCCCCTGCGTGCTGTCGATCTTGCTATCGCA
66 AGGCAGAATGCACAAGCCAAGGACCGACCCGATCCCCCCTGCATGCTATCGATCCTGCTACCGCA
** * *
19247149 ACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAT
131 ACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAT
* *
19247214 GAGCGTTCGGGTGCTGAGTCGGCCGGAGAAGCATAATGCACAAGCCGGGGATCGACCCGATCCCC
196 GAGCGTTCGGGT-CTGAGCCGGCCGGAGAAGCATAATGCACAAGCCGAGGATCGACCCGATCCCC
** * ** * *
19247279 CTCTGAGTGCTGTCGGTCCCACTGTGACAACCCTCAGTCCGGCTGGAGCTTAGACATGGAATGAA
260 CTCTGAGTGCTACCGATCCCACTGCCACAACCCCCAGTCCGACTGGAGCTTAGACATGGAATGAA
* * ** * * *
19247344 CTCCCTATGCCTAAGCTAACCCACGGGCGTGCGGGCTCTCAGCCGATCGGAGAGGCAGAATGAGC
325 CTCCCTATGCCTAAGCCAACCCACGGGCGTACAAGCGCTCAGCCGACCAGAGAGGCAGAATGAGC
* * *
19247409 AAGCCGGGGATCGGCCCGATTCCCCTGCGTGCTGCCATAACCCTTGGTCCGATTAGATCTTAGAC
390 AAGCCAGGGATCGGCCCGATTCCCCTGCGTGCTGCCACAACCCTTGGTCCGATCAGATCTTAGAC
* * *
19247474 TGGGAATATACTTCGTATGCTTAAACTGGGGATGAATTCCGTAGGCCTAAGTCAACCCACGAAAT
455 TAGGAATATACTTCGTATGCTTAAACTGGGGATGAACTCCGCAGGCCTAAGTCAACCCACGAAAT
* * * * * * *
19247539 GAGCGTGCAGGTGCTCAACCGGCCGGAGAGGTCGATCGGAGAGGTAGAATGCATAAGTCGAGGAT
520 GAGCATACAGGCGCTCAACCGGCAGGAGAGGCCGATCGGAGAGGCAGAATGCACAAGTCGAGGAT
* * * * * * * *
19247604 TGACCCGGTCCCCCCTTACGTGCTGCCGATCCTGCTGCTGGTCCTGCTATCGCAACCCTTGGTCC
585 AGACCCAGTCCCCCCTTA-GTGCTACCGATCCTGCTGCTGGTCCTACTACCACAACCCTCGATCC
*
19247669 GAGCCGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACAT
649 GAGCCGAGCTTAGAATGGGAATGAACTCCGTATGCTTAGACAT
* * * *
19247712 GGAATGAACTAT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGAA
1 GGAATGAACT-TCGTATGCCCAAGCCAACACACGAAACGAGCGTGCGGGCACTCAACCGATCGAA
** * * *
19247776 GAGGCAGAATGCGTAAGTCAAGGATCGACCCGAT-CCCCCTGCATGCTATCGATCCTGCTGCCGC
65 GAGGCAGAATGCACAAGCCAAGGACCGACCCGATCCCCCCTGCATGCTATCGATCCTGCTACCGC
* *
19247840 AACCCTCGG-TCTGGTCCAATGTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
130 AACCCTCGGTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
* * * * * ** *
19247904 ATGAGCGTTTGGCGT-TGAGCCGGTCGGAGAGGCATAAT-CGCAAGTCGAGGATC-AGCTTGGTC
194 ATGAGCGTTCGG-GTCTGAGCCGGCCGGAGAAGCATAATGCACAAGCCGAGGATCGA-CCCGATC
* * *
19247966 CCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCCCAGTCCGACTGGGGCTTAGACATGGAAT
257 CCCCTCTGAGTGCTACCGATCCCACTGCCACAACCCCCAGTCCGACTGGAGCTTAGACATGGAAT
*
19248031 GAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTACAAGCGCTCAGCCGACCAGAGAGGCA
322 GAACTCCCTATGCCTAAGCCAA-CC-C---ACGGGCGTACAAGCGCTCAGCCGACCAGAGAGGCA
* *
19248096 GAATGCA-CAAGCTAGGGATCGGCCC-ATTCCCCGTTGCATGCTGTCGATCCTGTTCCCGCAACC
382 GAATG-AGCAAGCCAGGGATCGGCCCGATT-CCC----C-TGC-GT-G---CTG---CCACAACC
* * * *
19248159 CTTGGTCTGGTCCGATCTTAGACTAGGAAT-TAACTTCGTATGCTTAGACTAGGGG-TGAACTCC
432 CTTGGTCCGATCAGATCTTAGACTAGGAATAT-ACTTCGTATGCTTAAACT-GGGGATGAACTCC
* * ** * *
19248222 GCATGCCTAAGTCAACCTACGAAATGAGCATATGGGCGCTTAGCCGGCAGGAGAGGCCGA-CTGG
495 GCAGGCCTAAGTCAACCCACGAAATGAGCATACAGGCGCTCAACCGGCAGGAGAGGCCGATC-GG
* * *
19248286 AGAGGCATAATGCGCAAGTCGGGGATCAG-CCCAGTCCCCCTCTGT-GTGCTACCGATCGC-GCT
559 AGAGGCAGAATGCACAAGTCGAGGAT-AGACCCAGTCCCCC-CT-TAGTGCTACCGATC-CTGCT
* * * * *
19248348 GCTTGTCCTACTGCCATAACCCTCGATCCGA-CTGGGGCTTAGACAT-GGAATGAACT
620 GCTGGTCCTACTACCACAACCCTCGATCCGAGC-CGAGCTTAGA-ATGGGAATGAACT
19248404 TTGTATGCCT
Statistics
Matches: 562, Mismatches: 97, Indels: 51
0.79 0.14 0.07
Matches are distributed among these distances:
689 1 0.00
690 92 0.16
691 24 0.04
692 92 0.16
693 82 0.15
694 4 0.01
695 52 0.09
696 1 0.00
699 1 0.00
700 3 0.01
701 2 0.00
702 1 0.00
705 3 0.01
707 3 0.01
708 190 0.34
709 10 0.02
710 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (691 bp):
GGAATGAACTTCGTATGCCCAAGCCAACACACGAAACGAGCGTGCGGGCACTCAACCGATCGAAG
AGGCAGAATGCACAAGCCAAGGACCGACCCGATCCCCCCTGCATGCTATCGATCCTGCTACCGCA
ACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAT
GAGCGTTCGGGTCTGAGCCGGCCGGAGAAGCATAATGCACAAGCCGAGGATCGACCCGATCCCCC
TCTGAGTGCTACCGATCCCACTGCCACAACCCCCAGTCCGACTGGAGCTTAGACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCACGGGCGTACAAGCGCTCAGCCGACCAGAGAGGCAGAATGAGCA
AGCCAGGGATCGGCCCGATTCCCCTGCGTGCTGCCACAACCCTTGGTCCGATCAGATCTTAGACT
AGGAATATACTTCGTATGCTTAAACTGGGGATGAACTCCGCAGGCCTAAGTCAACCCACGAAATG
AGCATACAGGCGCTCAACCGGCAGGAGAGGCCGATCGGAGAGGCAGAATGCACAAGTCGAGGATA
GACCCAGTCCCCCCTTAGTGCTACCGATCCTGCTGCTGGTCCTACTACCACAACCCTCGATCCGA
GCCGAGCTTAGAATGGGAATGAACTCCGTATGCTTAGACAT
Found at i:19248951 original size:159 final size:155
Alignment explanation
Indices: 19248582--19248943 Score: 358
Period size: 158 Copynumber: 2.3 Consensus size: 155
19248572 ACTCTGTATG
*
19248582 CTTAGACATGGAATGAACTCGGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAAC
1 CTTAGACATGGAATGAACTC-GTATGCCTAAGCCAACCCATGAAACGAGCGT--GGGAACTCAAC
* * * *
19248647 CACTCGGAGAGGTAGAATGCGCAAGCTGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
63 CACTCGGAGAGGCAGAATGCGCAAGCTGGGGACAGACCCGATCCCCCCTGCATGCTGTCGATCCC
*
19248712 GCTGCCGCAACCCTCGGTCTGATCCGAT
128 GCTGCCACAACCCTCGGTCTGATCCGAT
* * ** * ** *
19248740 CTTAGAC-TGGGACTGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGAAGTTTAG
1 CTTAGACAT-GGAATGAACTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTG-GGAACTCAAC
* * *
19248804 CAGGTCGGAGAGGCATAATGCGCAAGCTGTGGATCAG-CCCGATCCCCCTCTGCATGCTG-CAGG
63 CA-CTCGGAGAGGCAGAATGCGCAAGCTGGGGA-CAGACCCGATCCCCC-CTGCATGCTGTC--G
* * ** *
19248867 A-CCCGCTAG-CACAACTCTCTGTCTGACTGGGGT
123 ATCCCGCT-GCCACAACCCTCGGTCTGA-TCCGAT
19248900 -TTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCATGAAA
1 CTTAGACATGGAATGAACTCG-TATGCCTAAGCCAACCCATGAAA
19248944 TGGGCGTGCG
Statistics
Matches: 166, Mismatches: 27, Indels: 21
0.78 0.13 0.10
Matches are distributed among these distances:
156 1 0.01
157 8 0.05
158 84 0.51
159 66 0.40
160 7 0.04
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGGGAACTCAACCAC
TCGGAGAGGCAGAATGCGCAAGCTGGGGACAGACCCGATCCCCCCTGCATGCTGTCGATCCCGCT
GCCACAACCCTCGGTCTGATCCGAT
Found at i:19248976 original size:159 final size:156
Alignment explanation
Indices: 19248582--19248984 Score: 377
Period size: 159 Copynumber: 2.5 Consensus size: 156
19248572 ACTCTGTATG
* * *
19248582 CTTAGACATGGAATGAACTCGGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAAC
1 CTTAGACATGGAATGAACTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19248647 CACTCGGAGAGGTAGAATGCGCAAGCTGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
65 GAC-CGGAGAGGCAGAATGCGCAAGCTGGGGACAGACCCGATCCCCCCTGCATGCTGTCGATCCC
*
19248712 GCTGCCGCAACCCTCGGTCTGATCCGAT
129 GCTGCCACAACCCTCGGTCTGATCCGAT
* * ** * ** * *
19248740 CTTAGAC-TGGGACTGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGAAGTTTAG
1 CTTAGACAT-GGAATGAACTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * *
19248804 CAGGTCGGAGAGGCATAATGCGCAAGCTGTGGATCAG-CCCGATCCCCCTCTGCATGCTG-CAGG
64 C-GACCGGAGAGGCAGAATGCGCAAGCTGGGGA-CAGACCCGATCCCCC-CTGCATGCTGTC--G
* * ** *
19248867 A-CCCGCTAG-CACAACTCTCTGTCTGACTGGGGT
124 ATCCCGCT-GCCACAACCCTCGGTCTGA-TCCGAT
* *
19248900 -TTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCG-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
*
19248964 TGACCGGGGAGGCAGAATGCG
65 -GACCGGAGAGGCAGAATGCG
19248985 TAAGTCAAGG
Statistics
Matches: 191, Mismatches: 44, Indels: 19
0.75 0.17 0.07
Matches are distributed among these distances:
157 1 0.01
158 88 0.46
159 95 0.50
160 7 0.04
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCG
ACCGGAGAGGCAGAATGCGCAAGCTGGGGACAGACCCGATCCCCCCTGCATGCTGTCGATCCCGC
TGCCACAACCCTCGGTCTGATCCGAT
Found at i:19249291 original size:26 final size:26
Alignment explanation
Indices: 19249253--19249305 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19249243 CTGATCTGAT
*
19249253 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
19249279 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
19249305 C
1 C
19249306 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19250322 original size:26 final size:26
Alignment explanation
Indices: 19250280--19250332 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19250270 GGCTCAAACT
* *
19250280 CTTAGACTGGGATTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19250306 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19250332 C
1 C
19250333 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19250659 original size:26 final size:26
Alignment explanation
Indices: 19250623--19250675 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19250613 TTGGTTAGAT
19250623 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
19250649 CTTAGATTGGGGATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19250675 C
1 C
19250676 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19251371 original size:26 final size:26
Alignment explanation
Indices: 19251329--19251381 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19251319 CCGGTCCGAT
*
19251329 CTTAGACTAGGACTGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
19251355 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
19251381 C
1 C
19251382 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.88
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:19251719 original size:512 final size:512
Alignment explanation
Indices: 19250665--19251773 Score: 1390
Period size: 512 Copynumber: 2.2 Consensus size: 512
19250655 TTGGGGATGG
* * * * * * * * * *
19250665 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTTAGCCGAC-CGAGAGGCGGA
1 ACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCTAGAGAGGCAGA
* * * * * *
19250729 ATGCCCAAGCCGGGGATCAACCTAGTCCCCCTATGTGCTGCTGATCCTGCTACTGGTCCTACTGT
66 ATGCGCAAGCCGGGGATCGACCCAGTCCCCCTACGTGCTGCTGATCCTGCTACTGCTCCTACTAT
*
19250794 CGAAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGTAATGA
131 CGAAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGA
* * * * * *
19250859 ACTCCGTACGCCTAATCCAACCCATGGAATGAGTGTGCTGGCACTTAGCAGGCCGAAAAGGAAGA
196 ACTCCGTACGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCAGGCCGAAAAGGAAGA
* ** **
19250924 ATGCATAAGTTGGGGACCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGTCGCAACCCTCG
261 ATGCACAAGCCGGGGACCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCG
* * * * * *
19250989 GTCCAGTCCAATCTTAGACTTGGAATGAACTTCGTATGCCTAAGTTAACCCATGAAATGAGCGTT
326 GTCCAGTCCAATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTT
* * * * * **
19251054 CGGGCGCTGAGCTGATCGGAGAGCCATAATGCGTAAGCCAGGGATCGGCCTGGTCCTGCTCTGCG
391 CGGGCACTGAGCCGATCGGAGAGCCATAATGCGCAAGCCAGGGATCGACCTGATCCCCCTCTGCG
* *
19251119 TGCTACCGGTCTCGCTACCACAAGCCTCGATCCGACTGGGGCTTAGACTTGGAATGA
456 TGCTACCGGTCTCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGA
*
19251176 ACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG-CGGCTGGAGAGGCAGA
1 ACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCTAGAGAGGCAGA
* * *
19251240 ATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGCTGATCCTGCTACTGCTCCTGCTA
66 ATGCGCAAGCCGGGGATCGACCCAGT-CCCCCTACGTGCTGCTGATCCTGCTACTGCTCCTACTA
* **
19251305 TC-ACAACCCTCGGTCCGGTCCGATCTTAGACTAGGACTGAACTCTGTATGCTTAGACATGGAAT
130 TCGA-AACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAAT
* * ** ** * *
19251369 GAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGGTCAGCTTGCC-ATAGAGGC
194 GAACTCCGTACGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCAGGCCGA-AAAGGA
* * *
19251433 AGAATGCACAAGCCGGGGACCAGCCCGGTCCCCCCTGCGTGCTGTTGATCCTACTACCGTAACCC
258 AGAATGCACAAGCCGGGGACCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCC
** *
19251498 TCGGTCTTGTCTAATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGC
323 TCGGTCCAGTCCAATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGC
* *
19251563 GTAT-GGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGA-CTCGATCCCCCT
388 GT-TCGGGCACTGAGCCGATCGGAGAGCCATAATGCGCAAGCCAGGGATCGACCT-GATCCCCCT
* * * * *
19251626 TTGCGTGCTGCCGGTC-CTGCTGCCACAACCCTC-AGTTCGGCTGGGGCTTAGACATGGAATGA
451 CTGCGTGCTACCGGTCTC-GCTACCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAATGA
* * * *
19251688 ACTCCCTATACCTAAGCCAACCCATGAAACGGGTGTGTGGGTGCTCAGCCGG-TCAGAGAGGCAG
1 ACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCT-AGAGAGGCAG
* *
19251752 AATGTGCAAGCTGGGGATCGAC
65 AATGCGCAAGCCGGGGATCGAC
19251774 TCGATCTACG
Statistics
Matches: 510, Mismatches: 78, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
510 3 0.01
511 77 0.15
512 398 0.78
513 32 0.06
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (512 bp):
ACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCTAGAGAGGCAGA
ATGCGCAAGCCGGGGATCGACCCAGTCCCCCTACGTGCTGCTGATCCTGCTACTGCTCCTACTAT
CGAAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGA
ACTCCGTACGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCAGGCCGAAAAGGAAGA
ATGCACAAGCCGGGGACCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCG
GTCCAGTCCAATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTT
CGGGCACTGAGCCGATCGGAGAGCCATAATGCGCAAGCCAGGGATCGACCTGATCCCCCTCTGCG
TGCTACCGGTCTCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGA
Found at i:19251866 original size:26 final size:26
Alignment explanation
Indices: 19251825--19251880 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19251815 CTGATTCGAT
19251825 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
19251851 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19251877 CTTA
1 CTTA
19251881 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19252416 original size:159 final size:159
Alignment explanation
Indices: 19252230--19252578 Score: 400
Period size: 159 Copynumber: 2.2 Consensus size: 159
19252220 CTTAGACATA
* * * * * *
19252230 GAATGAACTCCCTATGCCTAAGCCAACCCACTAAATGGGCGTGGGGGTGTTTAGCTGGCCGAAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGCCGAAGA
* * * * * * * * * * *
19252295 GGCATAATGCACAAGTCGGGGATCGACTCGGTCCCCCTTTGCGCGCTGTTGGTCCTGCTGCCACA
66 GGCATAATCCACAAGCCGAGGATCAACCCGATCCCCCTCTGAGCGCTATCGGTCCCGCTGCCACA
19252360 ACCCTCCGTTCGGTCCGATCTTAGACTGG
131 ACCCTCCGTTCGGTCCGATCTTAGACTGG
** * *
19252389 GAATGAACTCTGTATGCCTAA-CTCAACCCACAAAATGAGCGTTCGGGTGCTGAGCCGGCCGGAG
1 GAATGAACTCCCTATGCCTAAGC-CAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGCCGAAG
*
19252453 AGGCATAATCCACAAGCCGAGGATCAACCCGATCCCCCTCTGAGTGCTATCGGTCCCGCTGCCAC
65 AGGCATAATCCACAAGCCGAGGATCAACCCGATCCCCCTCTGAGCGCTATCGGTCCCGCTGCCAC
* * * *
19252518 AACCCT-TGGTCTGG-CTGGAGCTTAGACAT-G
130 AACCCTCCGTTC-GGTC-CGATCTTAGAC-TGG
19252548 GAATGAACTCCCTATGCCTAAGCCAACCCAC
1 GAATGAACTCCCTATGCCTAAGCCAACCCAC
19252579 GGGCGTGCGG
Statistics
Matches: 157, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
158 5 0.03
159 150 0.96
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (159 bp):
GAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGCCGAAGA
GGCATAATCCACAAGCCGAGGATCAACCCGATCCCCCTCTGAGCGCTATCGGTCCCGCTGCCACA
ACCCTCCGTTCGGTCCGATCTTAGACTGG
Found at i:19252939 original size:26 final size:26
Alignment explanation
Indices: 19252889--19252941 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19252879 CCGAGCCGAT
*
19252889 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTACGTATG
*
19252915 CTTAGACAT-GGAATGAACTATGTATG
1 CTTAGA-ATGGGAATGAACTACGTATG
19252941 C
1 C
19252942 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTACGTATG
Found at i:19253809 original size:26 final size:26
Alignment explanation
Indices: 19253771--19253823 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19253761 TCGATCCAAT
19253771 CTTAGACTGGGAATGAACTCT-GTATG
1 CTTAGACTGGGAATGAACT-TAGTATG
19253797 CTTAGACAT-GGAATGAACTTAGTATG
1 CTTAGAC-TGGGAATGAACTTAGTATG
19253823 C
1 C
19253824 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTAGTATG
Found at i:19254051 original size:158 final size:157
Alignment explanation
Indices: 19253797--19254298 Score: 450
Period size: 158 Copynumber: 3.2 Consensus size: 157
19253787 ACTCTGTATG
** * ** *
19253797 CTTAGACATGGAATGAACTTAGTATGCCTAAGCCAACCCATGAAACGAGCGT-ACGAGCACTCAA
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGA-CACTCAG
* * * * * *
19253861 CCG-CTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGTTGTCGATC
64 CAGAC-CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
19253925 CTGCTGCCACAACCCTCGGTCTGATCCGAT
128 CTGCTGCCACAACCCTCGGTCTGATCCGAT
* * *
19253955 CTTAGACTGAGACTGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGA-AGCTGAG
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGACA-CTCAG
* * * * *
19254019 CCAG-CTAGAGAGGCATAATGCGCAAGCCGGGGATCGACCTGATCCCCCTCTGTGTGCTG-CAGG
64 -CAGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTC--G
* * ** *
19254082 A-CCGGCTAG-CACAACTCTCGGTCTGACTGGGGT
125 ATCCTGCT-GCCACAACCCTCGGTCTGA-TCCGAT
19254115 -TTAGACATGGAATGAACT-CGCTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGACACTCAG
1 CTTAGAC-TGGAATGAACTCCG-TATGCCTAAGCCAACCCATGAAATGAGCGTGTGGACACTCAG
* * * * * *
19254178 CTGACCGGGGAGGCAGAATGCGCAAGTCAGGGATC-GCCTCGATCCCTCCTGCGTGCTGTCGATC
64 CAGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-CGATCCCCCCTGCGTGCTGTCGATC
* * * * *
19254242 CT-ATGACCGCAACCCTCGATCCGATTCGAT
128 CTGCTG-CCACAACCCTCGGTCTGATCCGAT
*
19254272 CTTAGACTGGGAATGAACTCCTTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
19254299 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 49, Indels: 42
0.75 0.13 0.12
Matches are distributed among these distances:
156 1 0.00
157 10 0.04
158 134 0.49
159 120 0.44
160 9 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGACACTCAGCA
GACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCTGATCCGAT
Found at i:19254308 original size:26 final size:26
Alignment explanation
Indices: 19254272--19254324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19254262 CCGATTCGAT
*
19254272 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19254298 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19254324 C
1 C
19254325 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19254520 original size:26 final size:26
Alignment explanation
Indices: 19254469--19254521 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19254459 CTGATCTGAT
*
19254469 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
19254495 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
19254521 C
1 C
19254522 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19254776 original size:698 final size:702
Alignment explanation
Indices: 19253769--19255050 Score: 1626
Period size: 698 Copynumber: 1.8 Consensus size: 702
19253759 ATTCGATCCA
* * *
19253769 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTAGTATGCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAC
* * * * * *
19253834 CCATGAAACGAGCGTACGAGCACTCAACCGCTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGC
66 CCACGAAACGAGCGTACGAGCACTCAACCGCTCGAAGAGGTAGAATGCGCAAACCGGGGACCAGC
* * *
19253899 CCGGTCCCCCCTGCGTGTTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTG
131 CCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCAATCTTAGACTG
* **
19253964 AGACTGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGAAGCTGAGCCAGCTAGAG
196 AGAATGAACTCCGTATGCCTAAGTCAACCCAAAAAATGAGCGTGTGGAAGCTGAGCCAGCTAGAG
* **
19254029 AGGCATAATGCGCAAGCCGGGGATCGACCTGATCCCCCTCTGTGTGCTGCAGGAC-CGGCTAG-C
261 AGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGCAGGACTC-GCT-GCC
* * * *
19254092 ACAACTC-TCGGTCTGACTGGGGTTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCATG
324 ACAAC-CGTCGCTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
** * * *
19254156 AAATGAGCGTGTGGACACTCAG-CTGACCGGGGAGGCAGAATGCGCAAGTCAG-GGATC-GCCTC
388 AAATGAGCGTACGGACACTCAGTCAGA-AGGAGAGGCAGAATGCGCAAG-CAGAGGATCAG-CTC
19254218 GATCCCTCC-TGCGTGCTGTCGATCCT-ATGACCGCAACCCTCGATCC-G-AT-TC-GATCTTAG
450 GATCCC-CCTTGCGTGCTGTCGATCCTGATG-CCGCAACCCTCGATCCGGTATGTCTGATCTTAG
*
19254277 ACTGGGAATGAACTCCT-TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
513 ACTGGGAATGAACT-CTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGGCAACCCACGA
*
19254341 AATGAGCATGCGGGCTGAAAAAGCCAATCGGAAAGCCAGAAATCACAAGCCGGGGATCAGTTCGG
577 AACGAGCATGCGGGCTGAAAAAGCCAATCGGAAAGCCAGAAATCACAAGCCGGGGATCAGTTCGG
19254406 ACCCCTCGCGTGCTACCGATCCTGCTGCCGGTCCTACTGTAGCAACCCTCAGTCTGATCTG
642 ACCCCTCGCGTGCTACCGATCCTGCTGCCGGTCCTACTGTAGCAACCCTCAGTCTGATCTG
*
19254467 ATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAC
* * * * * * *
19254532 CCACGAAACGAGCGTGCG-GTCGCTTAGCCGGTTGAAGAGGTAGAATGCGTAAACCGGGGACCAG
66 CCACGAAACGAGCGTACGAG-CACTCAACCGCTCGAAGAGGTAGAATGCGCAAACCGGGGACCAG
** * * * * * *
19254596 CTTGATCCTCCCTGCGTGCTGTCTATCCTGCTGCCACAACCCTCGTTCTGGTCCAATCTTTGATT
130 CCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCAATCTTAGACT
* * * ** * * *
19254661 GGGAATGAACTCTGTATGCCTAAGTCAACCTAAAAAATGAGCGT-TCGGGCGTTGAG-TAGGTCA
195 GAGAATGAACTCCGTATGCCTAAGTCAACCCAAAAAATGAGCGTGT-GGAAGCTGAGCCAGCT-A
** * * * * * *
19254724 TCGAGGCATAATGGGCAAGCTGGGGATC-AGCCCGGTCCCTCTCTACGTGCTGCCGGTCTCGCTG
258 GAGAGGCATAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCTCTACGTGCTGCAGGACTCGCTG
* *
19254788 CCACAACCGTTGCTCCGACTGGGGCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCAT
322 CCACAACCGTCGCTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * *
19254853 GAAATGGGCTTACGGGCGCTCAGTCAGAAGGAGAGGTAGAATGCGTAAGCCGAGGATCAGCTCGA
387 GAAATGAGCGTACGGACACTCAGTCAGAAGGAGAGGCAGAATGCGCAAGCAGAGGATCAGCTCGA
* * * *
19254918 TCCCCCTTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGGTCTGGTCTGATCTTAGACT
452 TCCCCCTTGCGTGCTGTCGATCCTGATGCCGCAACCCTCGATCCGGTAT-GTCTGATCTTAGACT
** *
19254983 GGGAATGAACTCTATATGCTTAGACTGGGGATGAACTTTGTATGCCTAAGGCAACCCATGAAACG
516 GGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGGCAACCCACGAAACG
19255048 AGC
581 AGC
19255051 GTCCGGACGC
Statistics
Matches: 489, Mismatches: 77, Indels: 31
0.82 0.13 0.05
Matches are distributed among these distances:
697 12 0.02
698 393 0.80
699 8 0.02
700 1 0.00
702 4 0.01
703 71 0.15
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (702 bp):
ATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAC
CCACGAAACGAGCGTACGAGCACTCAACCGCTCGAAGAGGTAGAATGCGCAAACCGGGGACCAGC
CCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCAATCTTAGACTG
AGAATGAACTCCGTATGCCTAAGTCAACCCAAAAAATGAGCGTGTGGAAGCTGAGCCAGCTAGAG
AGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGCAGGACTCGCTGCCAC
AACCGTCGCTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
TGAGCGTACGGACACTCAGTCAGAAGGAGAGGCAGAATGCGCAAGCAGAGGATCAGCTCGATCCC
CCTTGCGTGCTGTCGATCCTGATGCCGCAACCCTCGATCCGGTATGTCTGATCTTAGACTGGGAA
TGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCAT
GCGGGCTGAAAAAGCCAATCGGAAAGCCAGAAATCACAAGCCGGGGATCAGTTCGGACCCCTCGC
GTGCTACCGATCCTGCTGCCGGTCCTACTGTAGCAACCCTCAGTCTGATCTG
Found at i:19256066 original size:26 final size:26
Alignment explanation
Indices: 19256030--19256082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19256020 TTGGTTAGAT
19256030 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
19256056 CTTAGACTGGGGATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19256082 C
1 C
19256083 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19257288 original size:25 final size:26
Alignment explanation
Indices: 19257248--19257299 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
19257238 CTGATCCAAT
19257248 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCATATG
19257273 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
19257299 C
1 C
19257300 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19257988 original size:26 final size:26
Alignment explanation
Indices: 19257950--19258002 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19257940 GGCTTAAACT
19257950 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19257976 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19258002 C
1 C
19258003 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19258273 original size:157 final size:157
Alignment explanation
Indices: 19257976--19258316 Score: 395
Period size: 157 Copynumber: 2.2 Consensus size: 157
19257966 ACTCCGTATG
* * * **
19257976 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* * * *
19258041 CGGCCGGAGAGTCAGAATGCGCAAGTCGGGGATTGACCCGATCCCCTCTGCGTGCTGCTGTTCCA
66 CAGCCGGAGAGTCAGAATGCACAAGTCGGGGATCGACCCGATCCCCTCTGCGTGCTGCTGATCCA
* * * *
19258106 CTGCCACAACCCTTGACCCGGTTGGGT
131 CTACCACAACCCTCGACCCGGTTCGAT
* *
19258133 CTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACATGCGGGCACTCAG
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CATGCGGGCACTCAG
* * * *
19258197 CCAGCCGGAGAGGT-AGAATGCACAAG-CTGGGGATCGGCCTGGTCCCC-CTGCGTGCT-ATCGA
65 CCAGCCGGAGA-GTCAGAATGCACAAGTC-GGGGATCGACCCGATCCCCTCTGCGTGCTGCT-GA
* **
19258258 TCCTACTACCGCAACCCTCGGTCCGGTTCGAT
127 TCC-ACTACCACAACCCTCGACCCGGTTCGAT
*
19258290 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTTGGAATGAACTCCGTATGC
19258317 TTAGACTGAG
Statistics
Matches: 155, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
155 1 0.01
156 15 0.10
157 137 0.88
158 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
CAGCCGGAGAGTCAGAATGCACAAGTCGGGGATCGACCCGATCCCCTCTGCGTGCTGCTGATCCA
CTACCACAACCCTCGACCCGGTTCGAT
Found at i:19258319 original size:26 final size:26
Alignment explanation
Indices: 19258290--19258342 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19258280 CCGGTTCGAT
19258290 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
19258316 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
19258342 C
1 C
19258343 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:19258529 original size:26 final size:26
Alignment explanation
Indices: 19258500--19258552 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19258490 CCGGTCCGAT
19258500 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
19258526 CTTAGACATGGGATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19258552 C
1 C
19258553 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19259310 original size:547 final size:548
Alignment explanation
Indices: 19257949--19259331 Score: 1556
Period size: 547 Copynumber: 2.5 Consensus size: 548
19257939 TGGCTTAAAC
19257949 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAAC
* * * *
19258013 CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGA-GTCAGAATGCGCAAGTCGGGGATTGA
65 CCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCGGAGAGGT-AGAATGCGTAAGCCGGGGATCG-
* * * * * * *
19258077 CCCGAT-CCCCTCTGCGTGCTGCT-GTTCCACTGCCACAACCCT-TGACCCGGTTGGGTCTTAGA
128 CCCGGTCCCCCTCTGCGTGTTGCTGGTCCCGCTGCCACAACCCTCAG-TCCGGTTGGGGCTTAGA
* * * * * *
19258139 CTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACATGCGGGCACTCAGCC-AGCC
192 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAACCGA-CC
* * * * * * *
19258203 GGAGAGGTAGAATGCA-CAAGCTGGGGATCGGCCTGGTCCCCCTGCGTGCTATCGATCCTACTAC
256 GGAGAGGCAGAATG-AGCAAGCTGGGGATCGACCCGAT---CCTACGTACCATCGATCCTACTAC
* *
19258267 CGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGA
317 CGCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGAGGATGA
* ** **
19258332 ACTCCGTATGCCAAAGTCAACCCATCAAACGAGCATTCGGGTGCTCAGCTGACCGGAGAGGCCGG
382 ACTCCGTATGCCAAAGTCAACCCATAAAACGAGCATTCGGCCGCTCAGCTGACCGGAGAGGCCAA
* * ** * * *
19258397 TCGGAGAGGCAGAATGCGCAAGTTAGGGATCGACCCGATCCCCCCTTACGCGCTACCGATCCTGC
447 CCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTTACGCGATACAGATCCTAC
* * *
19258462 TACTAGTCCTGCTTTCGCAACCCTTGGTCCGGTCCGA
512 TACTAGTCCTACTATCGCAACCCTCGGTCCGGTCCGA
* *
19258499 TCTTAGACAT-GGAATGAACTCCGTATGCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAAC
1 TCTTAGAC-TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
* * * * * * * **
19258563 CCACGACACAAGTGTGCGGGTG-TTCAACCGGCCGAAGAGGTACAATACGTAAGCCAAGGATCAG
65 CCACGAAACGAGCGTGCGGGTGCTT-AGCCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATC-G
* * * *
19258627 CCCGGTCCCCCTCTGCATGCTAT-C-GGTCCCGCTGCCACAGCCCTCGGTCCGATTGGGGCTTAG
128 CCCGGTCCCCCTCTGCGTG-T-TGCTGGTCCCGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAG
** * * *
19258690 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTAGGTGCTCAACCGGCC
191 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAACCGACC
* * ** *
19258755 GGAGAGGCAGAATGAGCAAGCTAGGGATCGACCCGAT-CTACGTACCGTCGATCCTACTGTCGTA
256 GGAGAGGCAGAATGAGCAAGCTGGGGATCGACCCGATCCTACGTACCATCGATCCTACTACCGCA
* *
19258819 ACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGTTTAGACTGGGGATGAACTC
321 ACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTC
* * * ** * *
19258884 CGTGTGCCTAAGTGAACCCATAAAACGAGTGTAT-GGCCGCTCAGCCT-ACCGTAGAGGTCAACC
386 CGTATGCCAAAGTCAACCCATAAAACGAGCAT-TCGGCCGCTCAG-CTGACCGGAGAGGCCAACC
* * * * * *
19258947 AGAGAGGCAGAATGTC-CAAGCCAGGGATCGGCCTGATCCCTCC-TGCGTGATGCAGATCCTACT
449 AGAGAGGCAGAATG-CGCAAGCCAGGGATCGACCCGATCCCCCCTTACGCGATACAGATCCTACT
** * * **
19259010 GTTGGTCCTACTATCGTAACCCTCGGTCCGGTTTGA
513 ACTAGTCCTACTATCGCAACCCTCGGTCCGGTCCGA
*
19259046 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
* * * * * *
19259111 CATGAAACGAGCCTGCGGGCGCTTTGCCAGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGTCC
66 CACGAAACGAGCGTGCGGGTGCTTAGCCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCG-CC
*
19259176 TGGTCCCCCTCTGCGTGTTGCTGGTCCCGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACAT
130 CGGTCCCCCTCTGCGTGTTGCTGGTCCCGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACAT
* * * * * *
19259241 AGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGGGGGCGCTTAATCGACCGAAG
195 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAACCGACCGGAG
* * *
19259306 AGGCATAATGCGCAAGCCGGGGATCG
260 AGGCAGAATGAGCAAGCTGGGGATCG
19259332 GCTCGGTCCC
Statistics
Matches: 692, Mismatches: 121, Indels: 43
0.81 0.14 0.05
Matches are distributed among these distances:
545 1 0.00
546 4 0.01
547 278 0.40
548 163 0.24
549 5 0.01
550 107 0.15
551 17 0.02
552 115 0.17
553 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (548 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGTGCTTAGCCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGCCC
GGTCCCCCTCTGCGTGTTGCTGGTCCCGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAACCGACCGGAGA
GGCAGAATGAGCAAGCTGGGGATCGACCCGATCCTACGTACCATCGATCCTACTACCGCAACCCT
CAGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTAT
GCCAAAGTCAACCCATAAAACGAGCATTCGGCCGCTCAGCTGACCGGAGAGGCCAACCAGAGAGG
CAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTTACGCGATACAGATCCTACTACTAGTCC
TACTATCGCAACCCTCGGTCCGGTCCGA
Found at i:19259363 original size:159 final size:158
Alignment explanation
Indices: 19259072--19259535 Score: 519
Period size: 159 Copynumber: 2.9 Consensus size: 158
19259062 AACTCCATAT
* * * *
19259072 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCCTGCGGGCGCTT--
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCCTGCGGGCGCTTAA
* * * * * ** * *
19259135 TGCCAGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGTCCTGGTCCCCCTCTGCGTGTTGCTGG
66 T-CGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-GGTCCCCCTCTGCGTGCAGCCGA
19259200 TCCCGCTGCCACAACCCTCAGTCCGG-TTGGG
128 TCCCGCTGCCACAACCCTCAGTCCGGCTT-GG
* * * *
19259231 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGGGGGCGCTTAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCCTGCGGGCGCTTAA
* * * *
19259296 TCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTTTGCGTGCAGCCGATC
66 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CGGTCCCCCTCTGCGTGCAGCCGATC
* * *
19259361 CCGCTACCACAACCCTCGGTTCGGCTTGG
130 CCGCTGCCACAACCCTCAGTCCGGCTTGG
* * *
19259390 GCTTAGAGATGGAATGAACTCCCTATGCCTAAGCGAACCCACGAAACGGGCTTGCGGGCG-TTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCCTGCGGGCGCTT-A
*
19259454 ATCG-CTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCC-CTGCGTGCTA-CCG
65 ATCGAC-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCGGTCCCCCTCTGCGTGC-AGCCG
* * *
19259516 ATCCTGCTGTCGCAACCCTC
127 ATCCCGCTGCCACAACCCTC
19259536 GGTTCAGTCT
Statistics
Matches: 259, Mismatches: 38, Indels: 17
0.82 0.12 0.05
Matches are distributed among these distances:
158 29 0.11
159 223 0.86
160 6 0.02
161 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCCTGCGGGCGCTTAA
TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGGTCCCCCTCTGCGTGCAGCCGATCC
CGCTGCCACAACCCTCAGTCCGGCTTGG
Found at i:19259585 original size:26 final size:26
Alignment explanation
Indices: 19259549--19259601 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19259539 TCAGTCTGAT
19259549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19259575 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19259601 C
1 C
19259602 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19260502 original size:159 final size:157
Alignment explanation
Indices: 19260087--19260532 Score: 468
Period size: 159 Copynumber: 2.8 Consensus size: 157
19260077 GGCTCAAAAT
* * * *
19260087 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
* * * * * * * *
19260152 CAGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAG-TCGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCC
* * *
19260217 GCTATCACAACCCTCAGTCTGGTCTGAT
130 ACTACCACAACCCTCAGTCTGGTCTGAG
* * *** * *
19260245 CTTAGACTAGGAATGAACTCCGTATGCATAATTGAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
* * * * ** *
19260310 CGACCGAAGAGGCATAATGCGCAAGTCAAGGATCGGTACGGTCCCCCTCTACGTGCTGCTTG-TC
66 CGGCCGGAGAGGCAGAATGCGCAAGTC-GGGATCGGCCCGGTCCCCC-CTACGTGCTG-TCGATC
* *
19260374 CCACTGCCACAACCCTCAGTCTGG-CTGGGG
128 CCACTACCACAACCCTCAGTCTGGTCT-GAG
*
19260404 CTTAGAA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGAGCTCA
1 CTTAGAATA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGAGCTCA
* * * *
19260467 ACCGGCCGGAGAGGCAGAATGCGCAAGTACGGGATCGGCCCGGTCCCCCCTGCGAGCTGCCGATC
64 GCCGGCCGGAGAGGCAGAATGCGCAAGT-CGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
19260532 C
128 C
19260533 TGCTACCGCA
Statistics
Matches: 233, Mismatches: 47, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 105 0.45
159 123 0.53
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
CTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGTCGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCCA
CTACCACAACCCTCAGTCTGGTCTGAG
Found at i:19260598 original size:26 final size:26
Alignment explanation
Indices: 19260562--19260614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19260552 CCACTCTGAT
*
19260562 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19260588 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19260614 C
1 C
19260615 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19261655 original size:26 final size:26
Alignment explanation
Indices: 19261626--19261676 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19261616 CTGGTCCGAT
*
19261626 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
19261652 CTTAAACTGGGGATGAACTCTGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
19261677 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:19261920 original size:342 final size:343
Alignment explanation
Indices: 19261292--19262045 Score: 853
Period size: 342 Copynumber: 2.2 Consensus size: 343
19261282 CTCTTAGTAT
* * * *
19261292 GGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGA
1 GGAATGAACTCCGTATGCTTAAACATGGAATGAACTCTGTATACCTAAGCCAACCCACAAAACGA
* * * * * * * **
19261357 GCGTGCGGGCGCTCAGCCTGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGGTCCTTCT
66 GCGTGCGGGCACACAGCCTGCCGGAGAGGCAGAATGAACAAGCCGAGGATCGACCCGGTCCCCCT
* *
19261422 TTATGTACTGCCAGTCCCGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT
131 CTATGTACTGCCAGTCCCGTTGCCACAACACTCGGTCCGACTGGGGCTTAGACATGGAATGAACT
*
19261487 CCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATG
196 CCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATG
* *
19261552 CGTAAGTCGAGGATCAACCTGGTCCCCCTTACGTGCTG-CTGATCCTGCTACCGCAACCTTTGGT
261 CGCAAGCCGAGGATCAACCTGGTCCCCCTTACGTGCTGTC-GATCCTGCTACCGCAACCTTTGGT
19261616 CTGGTCCGATCTTAGACTG
325 CTGGTCCGATCTTAGACTG
* * *
19261635 GGAATGAACTCCGTATGCTTAAAC-TGGGGATGAACTCTGTATACCTAAGTCAACCCACGAAACG
1 GGAATGAACTCCGTATGCTTAAACAT-GGAATGAACTCTGTATACCTAAGCCAACCCACAAAACG
* * *
19261699 AGCGTTCGGGCACAGAG-CTGGCCGGAGAGGCATAAT-AAGCAAGCCGAGGATC-AGCCCGGTCC
65 AGCGTGCGGGCACACAGCCT-GCCGGAGAGGCAGAATGAA-CAAGCCGAGGATCGA-CCCGGTCC
* * * *
19261761 CCCTCTGTGT-GTGTCAGTCTCGTTGCCACAACACTCGGTCCTG-CTGGGGCTTAGACATGGAAT
127 CCCTCTATGTACTGCCAGTCCCGTTGCCACAACACTCGGTCC-GACTGGGGCTTAGACATGGAAT
* * * *
19261824 TAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGTTCAGCCTG-CCGGAGAGGC
191 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCC-GACCGGAGAGGC
* *
19261888 AGAATGCGCAAGCC-AGGGATCGA-CTCGGTCCCCCTTGCGTGCTGTCGATCCTGCTTCTGGTCC
255 AGAATGCGCAAGCCGA-GGATCAACCT-GGTCCCCCTTACGTGCTGTCGA------------TCC
* * * * * * *
19261951 TGCTGCCGCGACCCTCGGTCCGATCTGATCTTAGACTG
306 TGCTACCGCAACCTTTGGTCTGGTCCGATCTTAGACTG
* * *
19261989 GGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 GGAATGAACTCCGTATGCTTAAACATGGAATGAACTCTGTATACCTAAGCCAACCCA
19262046 TGAAATGAGC
Statistics
Matches: 343, Mismatches: 46, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
341 3 0.01
342 146 0.43
343 109 0.32
354 84 0.24
355 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (343 bp):
GGAATGAACTCCGTATGCTTAAACATGGAATGAACTCTGTATACCTAAGCCAACCCACAAAACGA
GCGTGCGGGCACACAGCCTGCCGGAGAGGCAGAATGAACAAGCCGAGGATCGACCCGGTCCCCCT
CTATGTACTGCCAGTCCCGTTGCCACAACACTCGGTCCGACTGGGGCTTAGACATGGAATGAACT
CCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATG
CGCAAGCCGAGGATCAACCTGGTCCCCCTTACGTGCTGTCGATCCTGCTACCGCAACCTTTGGTC
TGGTCCGATCTTAGACTG
Found at i:19262009 original size:26 final size:26
Alignment explanation
Indices: 19261980--19262032 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19261970 CCGATCTGAT
19261980 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
19262006 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
19262032 C
1 C
19262033 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:19262239 original size:207 final size:208
Alignment explanation
Indices: 19261882--19262265 Score: 547
Period size: 207 Copynumber: 1.8 Consensus size: 208
19261872 AGCCTGCCGG
* * * * *
19261882 AGAGGCAGAATGCGCAAGCCAGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATCCTGCTTCTG
1 AGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCCCCCCT-CGTGCTATCGATCCTGCTACTA
* ** * **
19261947 GTCCTGCTGCCGCGACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
65 GTCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGA
*
19262012 CATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGTGCTCAGCCGGCTG
130 CATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGTGCTCAGCCGGCTG
19262077 GAGCGGCCGGTCGA
195 GAGCGGCCGGTCGA
* * * *
19262091 AGAGGCAGAATTCGTAAGCCAGGGATCGGC-CTGATCCCCCCT-GTGTTATCGATCCTGCTACTA
1 AGAGGCAGAATGCGCAAGCCAGGGATCGACTC-GATCCCCCCTCGTGCTATCGATCCTGCTACTA
** * *
19262154 GTCCTGCTGTTGCAACCCTTGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGA
65 GTCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGA
*
19262219 TATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTA
130 CATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTA
19262266 CGGGCGCTTA
Statistics
Matches: 153, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
207 117 0.76
208 1 0.01
209 35 0.23
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (208 bp):
AGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCCCCCCTCGTGCTATCGATCCTGCTACTAG
TCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGAC
ATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGTGCTCAGCCGGCTGG
AGCGGCCGGTCGA
Done.