Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 176 of 402
Found at i:19262515 original size:159 final size:159
Alignment explanation
Indices: 19262215--19262643 Score: 445
Period size: 159 Copynumber: 2.7 Consensus size: 159
19262205 TCCATATGCT
* * *
19262215 TAGATATGGAATGAACTCTGTATGCCTAAGCCAACCCAT-GAAACGAGCGTACGGGCGCTTAGT-
1 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCC-TCGAAACGAGCGTGCGGGCGCTCA-TC
* * * *
19262278 CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCATGTGTGCTACCAATCC
64 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCATGCGTGCTACCAATCC
** * * *
19262343 TGCTATCATAACCCTCGG-TCTGATCT-GATCA
129 CACTACCACAACCCTCGGTTC-GA-CTAGAGCA
* *
19262374 TAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGCGGGCGCTCATCCG
1 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGGCGCTCATCCG
* * * * * ** **
19262439 ACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGGCTCGATCCCACTC-TGCGTGCTGTCGGTCCC
66 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCCATGCGTGCTACCAATCCC
* *
19262503 ACTACCACAACCCTCGGTTCGACTAGGGCT
130 ACTACCACAACCCTCGGTTCGACTAGAGCA
* * * * * * *
19262533 TAGACATGGAATTAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGCGCGGGCGCTCAGCCG
1 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGGCGCTCATCCG
* ** * *
19262598 GCTGGAGAGGCAGAATGCGCAAGCCGGTAATCGACCTGATCCCCCC
66 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCC
19262644 TACGTGATGC
Statistics
Matches: 221, Mismatches: 44, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
158 6 0.03
159 211 0.95
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGGCGCTCATCCG
GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCATGCGTGCTACCAATCCCA
CTACCACAACCCTCGGTTCGACTAGAGCA
Found at i:19262740 original size:26 final size:26
Alignment explanation
Indices: 19262689--19262741 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19262679 CCGGTCCGAT
*
19262689 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19262715 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19262741 C
1 C
19262742 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19263605 original size:317 final size:317
Alignment explanation
Indices: 19262994--19263802 Score: 839
Period size: 317 Copynumber: 2.6 Consensus size: 317
19262984 CCAAATTTGG
* * * * * * * *
19262994 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCCCAACCG
1 TAGACATGGAATAAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAGCCG
** * * ** * * * * * * *
19263059 GTCGGAGCGGCAGAATGCGTAAGCC-AGAGATCGACCCGGTCCCCCCTGCTTGCTGCCGAT-TCT
66 ACCGAAGAGGCAGAATAAGCAAGCCGAG-GACCGGCTCGATCCCCCCTGCGTGCTGTCGATCT-T
* * **
19263122 GCTGCCGCAACCCTCGATCCGAT-TCGATGGTAGACTGGGAATGAACT-TCGTATGCCTAAGTCA
129 GCTACCGCAACCCTCGATCC-ATCT-AATCTTAGACTGGGAATGAACTCTCGTATGCCTAAGTCA
** * *
19263185 ACCCACGAAACGAGCGTTCGGGCGTTGAGCCAATCAGAGAGCCATAATGCGCAACTCGGGGATCG
192 ACCCACGAAACGAGCGTTCGGGCACTGAGCCAACCAGAGAGCCATAATGCACAACTCGGGGATCG
** * ** *
19263250 GCCCGATCCCACTCTGTGTCCTGTCGGTCCCACTGCCACAACCCTCGGT-TAGACTGGGGCT
257 GCCCGATCCCACTCTACGTCCTGCCGGTCCCACTGCCACAACCCTCAATCCAG-CTGGGGCT
* *
19263311 TAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCACTCAGCC
1 TAGACATGGAATAAACTCCCTACGCCTAAGCCAACCCACGAAACAG-GCATGCGGGCACTCAGCC
* * * *
19263375 GACCGAAGAGGTATAATAAGCAAG-CGAAGGACCGGCTCGATCCCCTTCTGTGTGCTGTCGATCT
65 GACCGAAGAGGCAGAATAAGCAAGCCG-AGGACCGGCTCGATCCCC-CCTGCGTGCTGTCGATCT
* * *
19263439 TGCTACCGCAACCCTC-AGTCCGGTCTGATCTTAGATTGGGAATGAACTCT-GTATGCCTAAGTC
128 TGCTACCGCAACCCTCGA-TCC-ATCTAATCTTAGACTGGGAATGAACTCTCGTATGCCTAAGTC
* * * *
19263502 AACCTACGAAACGAGCGTTCGGGCACTGAG-CGACCGGAGAGGCATAATGCACAAGC-CGGGGAT
191 AACCCACGAAACGAGCGTTCGGGCACTGAGCCAACCAGAGAGCCATAATGCACAA-CTCGGGGAT
* * * * * *
19263565 GGGCCCGGTCCCCCTCTACGTGCTGCCTGTCCCGCTGCCACAACCCTCAATCCAGCTGGGGCT
255 CGGCCCGATCCCACTCTACGTCCTGCCGGTCCCACTGCCACAACCCTCAATCCAGCTGGGGCT
* * * *
19263628 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGGGCACTCAGTCG
1 TAGACATGGAATAAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAGCCG
* ** * * * *
19263693 ACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCTTGC
66 ACCGAAGAGGCAGAATAAGCAAGCCGAGGACCGGCTCGATCCCCCCTGCGTGCTGTCGATCTTGC
* *
19263758 TGCCGCATCCCTCGATCCATCTAATCTTAGACTGGGAATGAACTC
131 TACCGCAACCCTCGATCCATCTAATCTTAGACTGGGAATGAACTC
19263803 CATATGCTTA
Statistics
Matches: 410, Mismatches: 69, Indels: 28
0.81 0.14 0.06
Matches are distributed among these distances:
315 24 0.06
316 35 0.09
317 249 0.61
318 99 0.24
319 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (317 bp):
TAGACATGGAATAAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAGCCG
ACCGAAGAGGCAGAATAAGCAAGCCGAGGACCGGCTCGATCCCCCCTGCGTGCTGTCGATCTTGC
TACCGCAACCCTCGATCCATCTAATCTTAGACTGGGAATGAACTCTCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTTCGGGCACTGAGCCAACCAGAGAGCCATAATGCACAACTCGGGGATCGGCCC
GATCCCACTCTACGTCCTGCCGGTCCCACTGCCACAACCCTCAATCCAGCTGGGGCT
Found at i:19263760 original size:158 final size:159
Alignment explanation
Indices: 19262994--19263776 Score: 660
Period size: 159 Copynumber: 4.9 Consensus size: 159
19262984 CCAAATTTGG
* * * *
19262994 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCCCAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
** * * * * * * * *
19263059 GTCGGAGCGGCAGAATGCGTAAGCCAGAGATCGACCCGGTCCCCCCTGCTTGCTGCCGAT-TCTG
66 ACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCT-TG
* *
19263123 CTGCCGCAACCCTCGATCC-GATTCGATGG--
130 CTGCCGCAACCCTCGATCCAGACT-G-GGGCT
* * * ** *
19263152 TAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * * * * * * *
19263216 AATCAGAGAGCCATAATGCGCAA-CTCGGGGATCGGCCCGATCCCACTCTGTGTCCTGTCGGTCC
65 GACCGGAGAGGCATAATGCGCAAGC-CGGGGATCGGCCCGGTCCC-CCCTGCGTGCTGTCGATCT
** * * *
19263280 CACTGCCACAACCCTCGGT-TAGACTGGGGCT
128 TGCTGCCGCAACCCTCGATCCAGACTGGGGCT
* *
19263311 TAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* * ** * * * * * *
19263376 ACCGAAGAGGTATAATAAGCAAG-CGAAGGACCGGCTCGATCCCCTTCTGTGTGCTGTCGATCTT
66 ACCGGAGAGGCATAATGCGCAAGCCG-GGGATCGGCCCGGTCCCC-CCTGCGTGCTGTCGATCTT
* * * **
19263440 GCTACCGCAACCCTC-AGTCCGGTCT-GATCT
129 GCTGCCGCAACCCTCGA-TCCAGACTGGGGCT
* * * * * *
19263470 TAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTTCGGGCACTGAG-C
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * *
19263533 GACCGGAGAGGCATAATGCACAAGCCGGGGATGGGCCCGGTCCCCCTCTACGTGCTGCCTG-TCC
65 GACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTC-GATCT
* * *
19263597 CGCTGCCACAACCCTCAATCCAG-CTGGGGCT
128 TGCTGCCGCAACCCTCGATCCAGACTGGGGCT
* * * *
19263628 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGCGGGCACTCAGTC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCAGCC
* * *
19263692 GACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCTTG
65 GACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCTTG
*
19263757 CTGCCGCATCCCTCGATCCA
130 CTGCCGCAACCCTCGATCCA
19263777 TCTAATCTTA
Statistics
Matches: 487, Mismatches: 115, Indels: 46
0.75 0.18 0.07
Matches are distributed among these distances:
157 8 0.02
158 233 0.48
159 242 0.50
160 4 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
ACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCTTGC
TGCCGCAACCCTCGATCCAGACTGGGGCT
Found at i:19269948 original size:183 final size:184
Alignment explanation
Indices: 19269636--19270200 Score: 600
Period size: 196 Copynumber: 3.0 Consensus size: 184
19269626 TCTGACGGGG
* * * * *
19269636 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCACCCCACGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * *
19269701 TCGGTCAGAGAGGCAGAATGCACAAG-TCGAGGATCGGCCCGATCCCCCCTACGTGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
* * **
19269765 CTGCTGCCGCAA-CCTTGGTCCGATTCAATCTTAGGTTGAGAATGAACTCCGTAT
130 CTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGAACTCCGTAT
* * * * *
19269819 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGATCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCA
* * * * * * * *
19269883 ACCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCTCGGTCCTCACTATGTGCTGTCGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGAT-
*
19269948 CTGCTGCTGGTCCTGCTGTCGTAACCCTCGGTCCAATCCAATCTTAGACT-AGGAATGAACTCCG
129 C--CTGCT-G--C--C-G-C--AACCCTCGGTCCGATCCAATCTTAGACTGA-GAATGAACTCCG
19270012 TAT
182 TAT
* * *
19270015 GCTTATACATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA-GCGCTCA
* * *
19270079 GCAGGCCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
* * * * *
19270144 CTGCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGAACTCCGTAT
19270199 GC
1 GC
19270201 CTAAGTCAAC
Statistics
Matches: 310, Mismatches: 53, Indels: 37
0.77 0.13 0.09
Matches are distributed among these distances:
182 1 0.00
183 101 0.33
184 44 0.14
186 6 0.02
187 2 0.01
188 1 0.00
189 1 0.00
191 1 0.00
192 2 0.01
193 5 0.02
195 5 0.02
196 140 0.45
197 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGAACTCCGTAT
Found at i:19270370 original size:159 final size:159
Alignment explanation
Indices: 19270015--19270453 Score: 383
Period size: 159 Copynumber: 2.8 Consensus size: 159
19270005 AACTCCGTAT
* *
19270015 GCTTATACATGGAATGAAC-CCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCAGGCGCTC
1 GCTTAGACATGGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAACTGAGCGTGCAGGCACTC
* ** **
19270078 AGCAGGCCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGAT
65 AACAGGCCGGAGAGGCAGAATACGCAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTACCGAT
* * *
19270143 CCTGCAGTCGCAACCCTCAGTCCGGTCCAA
130 CCCGCAGCCACAACCCTCAGTCCGGTCCAA
* * * * * * *
19270173 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACT-AGCGTTCGGGCATTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTGAGCGTGCAGGCACTC
* * * *
19270236 AACCGGTCGGAGAGGCATAATACGCAAG-TCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACC-
65 AACAGGCCGGAGAGGCAGAATACGCAAGCT-GAGGATCGGCCCGGTCCCCC-CTACGTGCTACCG
* ** ***
19270299 AGTCCCGCTGCCACAACCCTTGGTCCGG-CTGGG
128 A-TCCCGCAGCCACAACCCTCAGTCCGGTC-CAA
* * * **
19270332 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-GGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTGAGCGTGCAGGCACTCA
* * * * * * * * *
19270396 ACCGGCCAGATAGGCAGAATGCACAAGC-CAGGGATTGACCCGGTCCTCCCTACGTGCT
66 ACAGGCCGGAGAGGCAGAATACGCAAGCTGA-GGATCGGCCCGGTCCCCCCTACGTGCT
19270454 GTCGATCTTG
Statistics
Matches: 222, Mismatches: 48, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
157 2 0.01
158 100 0.45
159 119 0.54
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTGAGCGTGCAGGCACTCA
ACAGGCCGGAGAGGCAGAATACGCAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTACCGATC
CCGCAGCCACAACCCTCAGTCCGGTCCAA
Found at i:19270520 original size:26 final size:26
Alignment explanation
Indices: 19270491--19270541 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19270481 CCGGTCTGAT
19270491 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
19270517 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19270542 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:19271371 original size:158 final size:157
Alignment explanation
Indices: 19270884--19271382 Score: 484
Period size: 158 Copynumber: 3.2 Consensus size: 157
19270874 ACTCCGTATG
* *
19270884 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * *
19270949 CAATCGGAGAGGCAGAATGTGTAAGTCGAGGACCGGCTCGATCCCCCCTGCGTGCTATCGATCCT
66 CAATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCGGTCCTCCCTGCGTGCTCT-GATCCT
* * * * *
19271014 GCAGTGGCAACCCTTGGTCTGGTCCGAT
130 GCTGTCGCAACCCTCGGTCCGGTCTGAT
* * ** ** *
19271042 CTTAGA-TTGGGAATGAACTCCGTATGCCTATGTTAACCCACGAAACGAGCGTTTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
19271106 CCAATCGGAGAGGCATAATACGTAAGTCGAGGATCAGCTCGGTCCCTCTCTGCGTGCTACCGGTC
65 CCAATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCGGT-CCTCCCTGCGTGCT-CTGATC
* ** * * **
19271171 CTACTACCACAACCCTCGGTCCAG-CTAGGG
128 CTGCTGTCGCAACCCTCGGTCCGGTCT-GAT
* * * * **
19271201 CTTA-ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * ** * * * *
19271265 CGACCGGATAGGCAGAATGCACAAGTTGGGGATTGGCTCGGTCCTCCCTGCATGCTGCTGATCCT
66 CAATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCGGTCCTCCCTGCGTGCT-CTGATCCT
19271330 GCTGTCGCAACCCTCGGTCCGGTCTGAT
130 GCTGTCGCAACCCTCGGTCCGGTCTGAT
19271358 CTTAGAC-TGGGAATGAACTCCGTAT
1 CTTAGACAT-GGAATGAACTCCGTAT
19271383 ACTTAGACTG
Statistics
Matches: 264, Mismatches: 69, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 42 0.16
158 186 0.70
159 36 0.14
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCGGTCCTCCCTGCGTGCTCTGATCCTG
CTGTCGCAACCCTCGGTCCGGTCTGAT
Found at i:19271387 original size:26 final size:26
Alignment explanation
Indices: 19271358--19271408 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19271348 CCGGTCTGAT
19271358 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
19271384 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19271409 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:19271761 original size:879 final size:867
Alignment explanation
Indices: 19269819--19271892 Score: 2642
Period size: 868 Copynumber: 2.4 Consensus size: 867
19269809 AACTCCGTAT
* * * * **
19269819 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGATCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCA
* * * **
19269883 ACCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCTCGGTCCTCACTATGTGCTGTCGATC
65 ACCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGCCT-GATCCCCACTGCGTGCTGTCGATC
* ** ** * *
19269948 CTGCTGCTGGTCCTGCTGTCGTAACCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCGT
129 CTGCTGCTGGTCCTGCTGCCGTAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
19270013 ATGCTTATACATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTC
194 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
19270078 AG-CAGGCCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGA
259 AGCCA-ACCGGAGAGGCAGAATGTGCAAGCTGAGGACCGGCCCGATCCCCCCTACGTGCTATCGA
19270142 TCCTGCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
323 TCCTGCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * **
19270207 CAACCCACGAAACTAGCGTTCGGGCATTGAACCGGTCGGAGAGGCATAATACGCAAGTCGAGGAT
388 CAACCCACGAAACGAGCGTTCGGGCACTGAACCAATCGGAGAGGCATAATACGCAAGTCGAGGAT
* * * * * *
19270272 CGGCCCGGTCCCCCTCTGCGTGCTACCAGTCCCGCTGCCACAACCCTTGGTCCGGCTGGGGCTTA
453 CAGCCCGGTCCCCCTCTGCGTGCTACCAGTCCCACTACCACAACCCTCGGTCCAGCTAGGGCTTA
* *
19270337 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAACCGGC
518 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGTGCTCAACCGAC
* *
19270402 CAGATAGGCAGAATGCACAAGCCAGGGATTGACCCGGTCCTCCCTACGTGCTGTCGATCTTGCTA
583 CAGATAGGCAGAATGCACAAGCCAGGGATTGACCCGGTCCTCCCTACATGCTGTCGATCCTGCTA
19270467 TCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGGATG
648 TCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGGATG
* *
19270532 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATACAGGCGTTCAGTCGGCCAAAGAGGCAT
713 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATACAGGCCTTCAGCCGGCCAAAGAGGCAT
* * * * *
19270597 AATGCGAAAGCCGAGGATCAGTCCGGTCCCCCTCTACGTGTTGCCGATCCCGCTGCAGGTCCTGC
778 AATGCGAAAGCCAAGGATCAGCCCAGTCCCCCTCTACGTGCTGCCGATCCCACTGCAGGTCCTGC
19270662 TACCACAACCCTCAATCCTGCTGGG
843 TACCACAACCCTCAATCCTGCTGGG
* *
19270687 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAA
* * ** *
19270752 CTGACCGGAGAGACAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
66 CCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATC-GCCTGATCCCCACTGCGTGCTGTCGATCC
* * * * * *
19270817 TGCTGTTGGTCCTGCTGCCGCAACCC-TCGATCTGGTCCGATGTTAGATTGGGAATGAACTCCGT
130 TGCTGCTGGTCCTGCTGCCGTAACCCTTAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
19270881 ATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTC
194 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
19270946 AGCCAATCGGAGAGGCAGAATGTGTAAG-TCGAGGACCGGCTCGATCCCCCCTGCGTGCTATCGA
259 AGCCAACCGGAGAGGCAGAATGTGCAAGCT-GAGGACCGGCCCGATCCCCCCTACGTGCTATCGA
* ** * * * *
19271010 TCCTGCAGTGGCAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTATGT
323 TCCTGCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
19271075 TAACCCACGAAACGAGCGTTTGGGCACTGAGCCAATCGGAGAGGCATAATACGTAAGTCGAGGAT
388 CAACCCACGAAACGAGCGTTCGGGCACTGAACCAATCGGAGAGGCATAATACGCAAGTCGAGGAT
* * * *
19271140 CAGCTCGGTCCCTCTCTGCGTGCTACCGGTCCTACTACCACAACCCTCGGTCCAGCTAGGGCTTA
453 CAGCCCGGTCCCCCTCTGCGTGCTACCAGTCCCACTACCACAACCCTCGGTCCAGCTAGGGCTTA
** *
19271205 -ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAGCCGAC
518 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGTGCTCAACCGAC
* *** * * *
19271269 CGGATAGGCAGAATGCACAAGTTGGGGATTGGCTCGGTCCTCCCTGCATGCTG-CTGATCCTGCT
583 CAGATAGGCAGAATGCACAAGCCAGGGATTGACCCGGTCCTCCCTACATGCTGTC-GATCCTGCT
*
19271333 GTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGGAT
647 ATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGGAT
** * * * *
19271398 GAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTTAACCGACCGGAAGGCCG
712 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATACAGGC-CTT-------C---A-GCCG
* * * * * **
19271463 GTCAGAGAGGCATAATGCGTAAGCCAAGGATCAGCCCAGTCCCCTTTTTTGTGCTGCCGATCCCA
765 GCCAAAGAGGCATAATGCGAAAGCCAAGGATCAGCCCAGTCCCCCTCTACGTGCTGCCGATCCCA
* * *
19271528 CTGCCA-GTCCTGCTGCCACAACCCTCGATCC-GATTGGG
830 CTG-CAGGTCCTGCTACCACAACCCTCAATCCTG-CTGGG
*
19271566 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAA
* * * * * *
19271631 TCGATCGGACAGGTAGAATGCGTAAG-TCGGGGATCAGTCTGATCCCCTCTGCGTGCTGTCAATC
66 CCGATCGGAGAGGTAGAATGCGCAAGCT-GGGGATC-GCCTGATCCCCACTGCGTGCTGTCGATC
* * *
19271695 CTACTGCTGGTCCTGCTGCCATAACCCTTAGTCCGGTCCGATCTTAGACTGGGATTGAACTCCGT
129 CTGCTGCTGGTCCTGCTGCCGTAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * * *
19271760 ATGCTTAGACGTCGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGAGTGCGGGTGCTC
194 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * ** * *
19271825 AGCCGACCGGAGAGGCAG-A-GTGCATAAGCCG-GTGATTGGCCCGGTCCCCCCTACGTGCTGTC
259 AGCCAACCGGAGAGGCAGAATGTGC--AAGCTGAG-GACCGGCCCGATCCCCCCTACGTGCTATC
19271887 GATCCT
321 GATCCT
19271893 ACTACTGGTC
Statistics
Matches: 1029, Mismatches: 151, Indels: 41
0.84 0.12 0.03
Matches are distributed among these distances:
866 1 0.00
867 216 0.21
868 437 0.42
869 6 0.01
875 1 0.00
877 3 0.00
878 5 0.00
879 356 0.35
880 4 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (867 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAA
CCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGCCTGATCCCCACTGCGTGCTGTCGATCCT
GCTGCTGGTCCTGCTGCCGTAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAACCGGAGAGGCAGAATGTGCAAGCTGAGGACCGGCCCGATCCCCCCTACGTGCTATCGATCC
TGCAGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTTCGGGCACTGAACCAATCGGAGAGGCATAATACGCAAGTCGAGGATCAG
CCCGGTCCCCCTCTGCGTGCTACCAGTCCCACTACCACAACCCTCGGTCCAGCTAGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGTGCTCAACCGACCAG
ATAGGCAGAATGCACAAGCCAGGGATTGACCCGGTCCTCCCTACATGCTGTCGATCCTGCTATCG
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTCAACCCACAAAACGAGCATACAGGCCTTCAGCCGGCCAAAGAGGCATAAT
GCGAAAGCCAAGGATCAGCCCAGTCCCCCTCTACGTGCTGCCGATCCCACTGCAGGTCCTGCTAC
CACAACCCTCAATCCTGCTGGG
Found at i:19271903 original size:196 final size:194
Alignment explanation
Indices: 19271566--19272428 Score: 836
Period size: 196 Copynumber: 4.4 Consensus size: 194
19271556 TCCGATTGGG
* * * * *
19271566 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * * * * * *
19271631 TCGATCGGACAGGTAGAATGCGTAAGTCGGGGATCAGTCTGATCCCCTCTGCGTGCTGTCAATCC
66 CCGACCGAAGAGGCAGAGTGC-TAAGCCGGGAATGA-CCTGGTCCCCCCTACGTGCTGTCGATCC
* * ** *
19271696 TACTGCTGGTCCTGCTGCCATAACCCTTAGTCCGGTCCGATCTTAGACTGGGATTGAACTCCGTA
129 TACTGCTGGTCCTACTACCGCAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
19271761 T
194 T
* * * * * * * *
19271762 GCTTAGACGTCGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGAGTGCGGGTGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
19271827 CCGACCGGAGAGGCAGAGTGCATAAGCCGGTGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAGTGC-TAAGCCGG-GAATGACCTGGTCCCCCCTACGTGCTGTCGATCC
* * * * * *
19271892 TACTACTGGTCCTACTACCGCAACTCTT-GATCCGATCTGATCTTAGAATGGGAATGAACTCTGT
129 TACTGCTGGTCCTACTACCGCAACCCTTAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
19271956 AT
193 AT
* * * * * * *
19271958 GCTTACACATGGAATAAACTCCGTATGCCCAAGCCTACCCACGAAATGAGCGTACGGGCACTCGG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
19272023 TCGATCGAAGAGGTAGAACGTG-TAA-CCTGGGGAATGACCTGGTCCCCCCTGCGGGCTGTCGAT
66 CCGACCGAAGAGGCAG-A-GTGCTAAGCC--GGGAATGACCTGGTCCCCCCTACGTGCTGTCGAT
* * * * *
19272086 CCTACTGCTGGTCCTGCTACCGTAACCCTTAATCCGGTCTGATCTTAGATTGGGAATGAACTCCG
127 CCTACTGCTGGTCCTACTACCGCAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
19272151 TAT
192 TAT
* *
19272154 GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
19272219 CC-AGCTGAAGAGGCAGAATGCGTAAGCCGAGGACCGATCTGAT-CCCCCTACGTGCTGTCTATC
66 CCGA-CCGAAGAGGCAGAGTGC-TAAGCCG-GGAATGACCTGGTCCCCCCTACGTGCTGTCGATC
* * ** * * * *
19272282 CTTCTGCTGGTCCTACTATCGCAACCCTCGGTTCGGCCCGATCTTAGACTAGGAATGAACTCTGT
128 CTACTGCTGGTCCTACTACCGCAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
19272347 AT
193 AT
* ** * *
19272349 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTTCGGGCGCTGAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
19272414 CCAACCGGAGAGGCA
66 CCGACCGAAGAGGCA
19272429 TAATGAGTAA
Statistics
Matches: 540, Mismatches: 114, Indels: 27
0.79 0.17 0.04
Matches are distributed among these distances:
194 2 0.00
195 146 0.27
196 382 0.71
197 7 0.01
198 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.22
Consensus pattern (194 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAGTGCTAAGCCGGGAATGACCTGGTCCCCCCTACGTGCTGTCGATCCTA
CTGCTGGTCCTACTACCGCAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:19272362 original size:26 final size:26
Alignment explanation
Indices: 19272324--19272376 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19272314 TCGGCCCGAT
*
19272324 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19272350 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
19272376 C
1 C
19272377 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19272475 original size:392 final size:392
Alignment explanation
Indices: 19271566--19272479 Score: 1070
Period size: 392 Copynumber: 2.3 Consensus size: 392
19271556 TCCGATTGGG
* *
19271566 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-TCGGGCACTGA
* * * * * * *
19271630 ATCGATCGGACAGGTAGAATGCGTAAGTCGGGGATCAGTCTGAT-CCCCTCTGCGTGCTGTCAAT
65 GTCGATCGGAGAGGTAGAATGAGTAA-ACGGGGATTAGCCTGATCCCCCTCTGCGTGCTGTCGAT
* * *
19271694 CCTACTGCTGGTCCTGCTGCCATAACCCTTAGTCCGGTCCGATCTTAGACTGGGATTGAACTCCG
129 CCTACTGCTGGTCCTGCTACCATAACCCTTAATCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * *
19271759 TATGCTTAGACGTCGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGAGTGCGGGTGCT
194 TATGCTTAGACATCGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGAGTGCGGGTGCT
* * ** * *
19271824 CAGCCGACCGGAGAGGCAGAGTGCATAAGCCGGTGATTGGCCCGGTCCCCCCTACGTGCTGTCGA
259 CAGCCGACCGAAGAGGCAGAATGCATAAGCCGGTGACCGACCCGATCCCCCCTACGTGCTGTCGA
* * * * *
19271889 TCCTACTACTGGTCCTACTACCGCAACTCTTGATCCGATCTGATCTTAGAATGGGAATGAACTCT
324 TCCTACTACTGGTCCTACTACCGCAACCCTCGATCCGACCCGATCTTAGAATAGGAATGAACTCT
19271954 GTAT
389 GTAT
* * * * * *
19271958 GCTTACACATGGAATAAACTCCGTATGCCCAAGCCTACCCACGAAATGAGCGTACGGGCACTCG-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCACT-GA
* * * * * * *
19272022 GTCGATCGAAGAGGTAGAACGTGTAACCTGGGGAAT-GACCTGGTCCCCC-CTGCGGGCTGTCGA
65 GTCGATCGGAGAGGTAGAATGAGTAAAC-GGGGATTAG-CCTGATCCCCCTCTGCGTGCTGTCGA
* * *
19272085 TCCTACTGCTGGTCCTGCTACCGTAACCCTTAATCCGGTCTGATCTTAGATTGGGAATGAACTCC
128 TCCTACTGCTGGTCCTGCTACCATAACCCTTAATCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
19272150 GTATGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGC
193 GTATGCTTAGACATCGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGAGTGCGGGTGC
* * * *
19272215 TCAGCC-AGCTGAAGAGGCAGAATGCGTAAGCCGAG-GACCGATCTGAT-CCCCCTACGTGCTGT
258 TCAGCCGA-CCGAAGAGGCAGAATGCATAAGCCG-GTGACCGACCCGATCCCCCCTACGTGCTGT
* * * * * * * *
19272277 CTATCCTTCTGCTGGTCCTACTATCGCAACCCTCGGTTCGGCCCGATCTTAGACTAGGAATGAAC
321 CGATCCTACTACTGGTCCTACTACCGCAACCCTCGATCCGACCCGATCTTAGAATAGGAATGAAC
19272342 TCTGTAT
386 TCTGTAT
** *
19272349 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTTCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCACTGAG
* * * * * ** *
19272414 CCAACCGGAGAGGCATAATGAGTAAACAGGGGATTAGCCCAATCCCCCTCTGTGTGCTGTCGATC
66 TCGATCGGAGAGGTAGAATGAGTAAAC-GGGGATTAGCCTGATCCCCCTCTGCGTGCTGTCGATC
19272479 C
130 C
19272480 CGCTGCCATA
Statistics
Matches: 430, Mismatches: 82, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
390 1 0.00
391 163 0.38
392 261 0.61
393 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (392 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCACTGAG
TCGATCGGAGAGGTAGAATGAGTAAACGGGGATTAGCCTGATCCCCCTCTGCGTGCTGTCGATCC
TACTGCTGGTCCTGCTACCATAACCCTTAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACATCGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGAGTGCGGGTGCTCA
GCCGACCGAAGAGGCAGAATGCATAAGCCGGTGACCGACCCGATCCCCCCTACGTGCTGTCGATC
CTACTACTGGTCCTACTACCGCAACCCTCGATCCGACCCGATCTTAGAATAGGAATGAACTCTGT
AT
Found at i:19273440 original size:26 final size:26
Alignment explanation
Indices: 19273389--19273441 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19273379 GGCTCAAACT
**
19273389 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19273415 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19273441 C
1 C
19273442 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19274461 original size:170 final size:172
Alignment explanation
Indices: 19274058--19274462 Score: 516
Period size: 171 Copynumber: 2.4 Consensus size: 172
19274048 CTGATCTCGC
* * *
19274058 TGCCGGTCTTGCTGCCACAACCCTCGGTCTGGT-TAGGGCTTAGACATGGAATGTACTCCGTATG
1 TGCCGGTCCTGCTGCCACAACCCTCGGTCTGGTCTAGGGCTTAGACATGGAATGAACTCTGTATG
* * ** * * *
19274122 CCTAAGCCAACCCACGAAATGAGCGTGTGGGTGCTCAACCGATCGAGAAGGCAGAATGTGCAAGC
66 CCTAAGCCAACCCACAAAATGAGCATGCAGGCGCTCAACCAATCGAGAAGGCAGAATGCGCAAGC
*
19274187 TGAGGATCGGCTCGACCCCCCTCTACGTGCTGTCGATCCCGT
131 CGAGGATCGGCTCGACCCCCCTCTACGTGCTGTCGATCCCGT
* * * *
19274229 TGCCGGTCCTGCTGCCACAACACTCGGTC-CGACTGGGGCTTAGACATGGAATGAACTCTGTATG
1 TGCCGGTCCTGCTGCCACAACCCTCGGTCTGGTCTAGGGCTTAGACATGGAATGAACTCTGTATG
*
19274293 CCTAAGCCAACCCACAAAATGAGCATGCAGGCGCTCAACCAATCGA-AGAGGCAGAATGCGCATG
66 CCTAAGCCAACCCACAAAATGAGCATGCAGGCGCTCAACCAATCGAGA-AGGCAGAATGCGCAAG
* * * * *
19274357 CCGGGGATCGGTTCGATCCCCC-CTGCGTGCTGTCGATCCTGT
130 CCGAGGATCGGCTCGACCCCCCTCTACGTGCTGTCGATCCCGT
* * * **
19274399 TGCTGGTCCTGTTGCCACAACCCTCGATCTGGTCT-GATCTTAGAC-TAGGAATGAACTCTGTAT
1 TGCCGGTCCTGCTGCCACAACCCTCGGTCTGGTCTAGGGCTTAGACAT-GGAATGAACTCTGTAT
19274462 G
65 G
19274463 TGTAGCCATG
Statistics
Matches: 201, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
169 1 0.00
170 70 0.35
171 130 0.65
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (172 bp):
TGCCGGTCCTGCTGCCACAACCCTCGGTCTGGTCTAGGGCTTAGACATGGAATGAACTCTGTATG
CCTAAGCCAACCCACAAAATGAGCATGCAGGCGCTCAACCAATCGAGAAGGCAGAATGCGCAAGC
CGAGGATCGGCTCGACCCCCCTCTACGTGCTGTCGATCCCGT
Found at i:19274964 original size:157 final size:159
Alignment explanation
Indices: 19274614--19274964 Score: 352
Period size: 159 Copynumber: 2.2 Consensus size: 159
19274604 CCCTCAGTCT
* * * * * * *
19274614 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCTACAAAATGAGCGTGCGGG
1 GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACATGCGGG
* * * * * * * * *
19274679 TGCTGAACCAGTCGGAGAGGCATAATGCGTAAGTCGGGAATCGGCTCGGTCCCTCTCTGCGTGCT
66 CGCTCAACCAGTCAGAGAGGCAGAATGCGCAAGTCGGGAATCAGCCCGGTCCCTCCCTACGTGCT
* * *
19274744 GCCGATCCCGCTGCCACAACCCTCGGTCC
131 ACCGATCCCGCTGCCACAACCCGCGATCC
* ** * * *
19274773 -GACTGGGGCTTAGAC-ATGGAATGAACGCCCTATGCCTAAGCCAACCCACAAAACGAACATTCG
1 GGTCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACATGCG
** * *
19274836 GGCGCTCAGTCGGTCAGAGAGGCAGAA-GCGCAAG-CTGGGGATCAGCCCGGTCCC-CCCTACGT
64 GGCGCTCAACCAGTCAGAGAGGCAGAATGCGCAAGTC-GGGAATCAGCCCGGTCCCTCCCTACGT
* * *
19274898 GCTACCGATCCTGCTGTCGCAACCCGCGATCC
128 GCTACCGATCCCGCTGCCACAACCCGCGATCC
19274930 GGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
1 GGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
19274965 TTAGACTAGG
Statistics
Matches: 150, Mismatches: 37, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
157 57 0.38
158 28 0.19
159 65 0.43
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACATGCGGG
CGCTCAACCAGTCAGAGAGGCAGAATGCGCAAGTCGGGAATCAGCCCGGTCCCTCCCTACGTGCT
ACCGATCCCGCTGCCACAACCCGCGATCC
Found at i:19274967 original size:26 final size:26
Alignment explanation
Indices: 19274938--19274990 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19274928 CCGGTCTGAT
19274938 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19274964 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19274990 C
1 C
19274991 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19275965 original size:159 final size:159
Alignment explanation
Indices: 19275643--19276139 Score: 396
Period size: 159 Copynumber: 3.1 Consensus size: 159
19275633 GGCTCAAAAT
* * *
19275643 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACTAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19275708 CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCCACGTGCTGTCGATCC
66 CAGCCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCCCACGTGCTGCCGATCC
* * * *
19275773 TGCTGCCATAACCCTCGGTCCGGTCTGAT
131 TGCTACCACAACCCTCAGTCCGGTCTGAG
* * * * * *
19275802 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
19275867 CAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCTCCTCTGCGTGCTGCCGAT-T
66 CAGCCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCCCACGTGCTGCCGATCC
* * *
19275931 TCGCTACCACAACCTTCAGTCTGG-CTGGGG
131 T-GCTACCACAACCCTCAGTCCGGTCT-GAG
* * * * * *
19275961 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAATGC-ACAAAACGGGCGTGCGGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAA-CCAACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * * ** * ** *
19276024 ACTGGTC-AGAGAGGTAGAATGCGTAAGCTGAGGATCGGCCTAGT-CCCCGCTGCGTGCT-ACGA
64 GCCAGCCGA-AGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCCCACGTGCTGCCGA
* * ** * * *
19276086 GTCCTACTACCGCAACCCTTGGTCCGATCCGAT
128 -TCCTGCTACCACAACCCTCAGTCCGGTCTGAG
19276119 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
19276140 ATTTGCTTAG
Statistics
Matches: 267, Mismatches: 62, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 52 0.19
159 209 0.78
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCCCACGTGCTGCCGATCC
TGCTACCACAACCCTCAGTCCGGTCTGAG
Found at i:19276353 original size:26 final size:26
Alignment explanation
Indices: 19276315--19276367 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19276305 TCGATCCAAT
19276315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19276341 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19276367 C
1 C
19276368 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19276438 original size:196 final size:196
Alignment explanation
Indices: 19276110--19276462 Score: 548
Period size: 196 Copynumber: 1.8 Consensus size: 196
19276100 ACCCTTGGTC
* * *
19276110 CGATCCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGGATGAACTCCGTATGCCTA
1 CGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
19276175 AGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGG
66 AGCCAACCCACAAAACGAGCATGCGGGCGTTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGG
19276240 GATCGACCCGGTCCCCCCTACGTGCTGCCAATCCTGTTGCTAGTCCTGCTGGCGCAACCTTCGAT
131 GATCGACCCGGTCCCCCCTACGTGCTGCCAATCCTGTTGCTAGTCCTGCTGGCGCAACCTTCGAT
19276305 T
196 T
* *
19276306 CGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCTGTATGCCT
1 CGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCT
* * * *
19276370 AAGCCAACCCATAAAACGAGCGTGCGGGCGCTT-AGCCGACCGGAGAGGCAGAATGCGTAAGTCG
65 AAGCCAACCCACAAAACGAGCATGCGGGCG-TTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG
* *
19276434 GGGATCGGCCCGGTCCCCCCTATGTGCTG
129 GGGATCGACCCGGTCCCCCCTACGTGCTG
19276463 TCGATCCTAC
Statistics
Matches: 141, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
196 138 0.98
197 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (196 bp):
CGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCCACAAAACGAGCATGCGGGCGTTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGG
GATCGACCCGGTCCCCCCTACGTGCTGCCAATCCTGTTGCTAGTCCTGCTGGCGCAACCTTCGAT
T
Found at i:19283239 original size:26 final size:26
Alignment explanation
Indices: 19283203--19283254 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19283193 GCTCAAAATT
*
19283203 TTAGACTTGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
19283229 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
19283255 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:19283538 original size:159 final size:158
Alignment explanation
Indices: 19283227--19283667 Score: 528
Period size: 159 Copynumber: 2.8 Consensus size: 158
19283217 AACTCCGTAT
19283227 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
19283292 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAATCCCCCCCTGCGTGTTGTCAATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAT-CCCCCCTGCATGCTGCCAATC
* * * *
19283357 CTGCTACCGCAACCCTCGGTCTGGTCT-GA
130 CCGCTACCACAACACTCAGTCTGGT-TAGA
* * * * * * *
19283386 TCTTAGAC-TAGGAAAGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
** ** * * **
19283450 GCCAACCAAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCTGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCATGCTGCCAAT
* *
19283515 CCCGCTGCCACAACACTCAGTCTGGTTAGG
129 CCCGCTACCACAACACTCAGTCTGGTTAGA
* * *
19283545 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
19283610 CCGGCTGGAGAGGCAGAATACGCAAGCCGGGGATC-AGCCCGATCCCCCCTGCATGCTG
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCCCCTGCATGCTG
19283668 TCGATCCTGC
Statistics
Matches: 232, Mismatches: 45, Indels: 11
0.81 0.16 0.04
Matches are distributed among these distances:
158 18 0.08
159 213 0.92
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGCCAATCC
CGCTACCACAACACTCAGTCTGGTTAGA
Found at i:19284367 original size:158 final size:156
Alignment explanation
Indices: 19284122--19284605 Score: 506
Period size: 158 Copynumber: 3.1 Consensus size: 156
19284112 ATGGAATGAG
* * * *
19284122 CTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAA
1 CTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTG-AGGCACTCAACCGGTCGGAGAGGCAAAA
* * * * *
19284187 TGCGCAAGTCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCTTTGG
65 TGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGG
19284252 TCTGGTCTGATCTTAGACTGGGAATAAA
130 TC-GGTCTGATCTTAGACTGGGAATAAA
* * * * * * * *
19284280 CTCTGTATACCTAAGTCAACCGATGAAACGAGCGTGTAGGCACTGAACCGGTCGAAGAGGCATAA
1 CTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTG-AGGCACTCAACCGGTCGGAGAGGCAAAA
* * * * * *
19284345 TGCGCAAGCCGGGGATCGGCCCGGTTCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGG
65 TGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGG
* * **
19284410 TCCGACTAGGGCTTAGACAT-GGAATAAA
130 TCGGTCT-GATCTTAGAC-TGGGAATAAA
* ** * * *
19284438 CTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGAGGGCACTCAACC-GACAGGAGAGGCAGA
1 CTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGA-GGCACTCAACCGGTC-GGAGAGGCAAA
* ** *
19284502 ATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTATGTGCTG-CTGATCCTGCTGCTGCAACCCTT
64 ATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTT
* * *
19284566 GATCCGGTTTGATCTTAGACTGGGAATGAA
128 GGT-CGGTCTGATCTTAGACTGGGAATAAA
19284596 CTCCGTATGC
1 CTCCGTATGC
19284606 TTAAACTAGG
Statistics
Matches: 260, Mismatches: 59, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 8 0.03
158 248 0.95
159 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGCACTCAACCGGTCGGAGAGGCAAAAT
GCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGT
CGGTCTGATCTTAGACTGGGAATAAA
Found at i:19285491 original size:26 final size:26
Alignment explanation
Indices: 19285462--19285515 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
19285452 GATCCGATCT
19285462 TAGACT-GGGAATGAACT-TCGTATGCC
1 TAGACTAGGG-ATGAACTCT-GTATGCC
19285488 TAGACTAGGGATGAACTCTGTATGCC
1 TAGACTAGGGATGAACTCTGTATGCC
19285514 TA
1 TA
19285516 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCTGTATGCC
Found at i:19286562 original size:159 final size:158
Alignment explanation
Indices: 19286207--19286707 Score: 484
Period size: 159 Copynumber: 3.2 Consensus size: 158
19286197 AACTCCGTAT
* *
19286207 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACT-AGCGTG-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGGCTAAGACAACCCACGAAA-TGAGCGTGCGGGCGCTCA
* * * ***
19286270 GTCGGTCGGAGAGGCAGAATGC-TAAAGCCGGGGATC-GGCCTGGTCCCCCCTGCGTGCTGTTGA
65 GCCGGTCGAAGAGGCAGAATGCGT-AAGCCGGGGATCGGGCC-GGTCCCCCCTACGTGCTGCCAA
** *
19286333 TCTTGCTACCGTAACCCTCGGTCTGATCTGA
128 TCTTGCTACCACAACCCTCGGTCTGAGCTGA
* * * * *
19286364 TCTTACAC-TGGGAATGAACTCCGTAT-GCATAAGTCAACCCAGGAAATGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGGC-TAAGACAACCCACGAAATGAGCGTGCGGGCGCTC
* *
19286427 AGCCGGTCGAAGAGGCATAATGCGTAAGCCGAGGATCGGGCCGGTCCCCCTCTACGTGCTGCCAA
64 AGCCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGGCCGGTCCCCC-CTACGTGCTGCCAA
*
19286492 TCTTGCTACCACAACCCTCGGT-TCG-GCTGGG
128 TCTTGCTACCACAACCCTCGGTCT-GAGCT-GA
* * * *
19286523 GCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAATGGGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGGCTAAGACAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
19286588 CCAGCCGGAA-AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATC
66 CCGGTC-GAAGAGGCAGAATGCGTAAGCCGGGGATCGGGCCGGTCCCCCCTACGTGCTGCCAATC
* ** * * *
19286652 CTGCTGTCGCAACCCTCGGTCTG-GTTCCA
130 TTGCTACCACAACCCTCGGTCTGAGCT-GA
*
19286681 TCTTAGAC-TGGGAATGAACTCCGTATG
1 GCTTAGACAT-GGAATGAACTCCGTATG
19286708 CTTAGACTTG
Statistics
Matches: 283, Mismatches: 47, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
156 3 0.01
157 43 0.15
158 104 0.37
159 127 0.45
160 6 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGGCTAAGACAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGGCCGGTCCCCCCTACGTGCTGCCAATCT
TGCTACCACAACCCTCGGTCTGAGCTGA
Found at i:19286723 original size:26 final size:26
Alignment explanation
Indices: 19286682--19286734 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19286672 CTGGTTCCAT
*
19286682 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19286708 CTTAGACTTGGG-ATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19286734 C
1 C
19286735 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19287020 original size:12 final size:12
Alignment explanation
Indices: 19287005--19287044 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
19286995 ATGCTACTGA
19287005 TCCTGCTGCTGG
1 TCCTGCTGCTGG
19287017 T-C--CTGCTGG
1 TCCTGCTGCTGG
*
19287026 TCCTGCTGGTGG
1 TCCTGCTGCTGG
19287038 TCCTGCT
1 TCCTGCT
19287045 ACCGTAACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
9 8 0.33
10 1 0.04
11 1 0.04
12 14 0.58
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.35
Consensus pattern (12 bp):
TCCTGCTGCTGG
Found at i:19287024 original size:9 final size:9
Alignment explanation
Indices: 19287010--19287035 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
19287000 ACTGATCCTG
19287010 CTGCTGGTC
1 CTGCTGGTC
19287019 CTGCTGGTC
1 CTGCTGGTC
19287028 CTGCTGGT
1 CTGCTGGT
19287036 GGTCCTGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.31, G:0.35, T:0.35
Consensus pattern (9 bp):
CTGCTGGTC
Found at i:19287029 original size:21 final size:21
Alignment explanation
Indices: 19287005--19287044 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
19286995 ATGCTACTGA
19287005 TCCTGCTGCTGGTCCTGCTGG
1 TCCTGCTGCTGGTCCTGCTGG
*
19287026 TCCTGCTGGTGGTCCTGCT
1 TCCTGCTGCTGGTCCTGCT
19287045 ACCGTAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.35
Consensus pattern (21 bp):
TCCTGCTGCTGGTCCTGCTGG
Found at i:19287497 original size:159 final size:157
Alignment explanation
Indices: 19287095--19287597 Score: 456
Period size: 158 Copynumber: 3.2 Consensus size: 157
19287085 AACTCTGTAT
* * *
19287095 GCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGA-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAG
* * * * **
19287160 CCGGTCGAAGAGGTAGAATGCGTAAGCCGGGGA-CCGACCGGGTCCCCCCTGCGTGCTATCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACC-GGTCCCCCCTGCGTGCTGCCGATC
* * * * *
19287224 CTGTTGCTGTAACCTTTGGTCTGGTCTGA
129 CTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * * * * * * *
19287253 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTGTGGTTGCTAA
1 GCTTAGAAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAA-CGTGCGGGTGCTCA
* * * * * * *
19287317 GCCAG-CTAGAGAGGCATAATGCACAAGCCGAGGATCGGGCCGGTCCCCCTCTGCGTGCTGCCGG
64 GCCGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGACCGGTCCCCC-CTGCGTGCTGCCGA
* * *
19287381 TCTTGCTGCCACAACCCTCGGTCTGGT-TGGG
127 TCCTGCTGCCGCAACCCTCGGTCTGGTCT-GA
* * * *
19287412 GGTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTACTCAG
1 GCTTAGA-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAG
* * * * * **
19287477 CCGGTCGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGCAAATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACCGGTCCCCCCTGCGTGCTGCCGATCC
* * *
19287542 TGCTGCCGCAACCCTCGGTCCGATCCGA
130 TGCTGCCGCAACCCTCGGTCTGGTCTGA
* * *
19287570 TCTTAGACTGGGAATCAACTCCATATGC
1 GCTTAGAAT-GGAATGAACTCCATATGC
19287598 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 68, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 135 0.51
159 123 0.46
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGAATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACCGGTCCCCCCTGCGTGCTGCCGATCCT
GCTGCCGCAACCCTCGGTCTGGTCTGA
Found at i:19287607 original size:26 final size:25
Alignment explanation
Indices: 19287571--19287622 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19287561 CCGATCCGAT
19287571 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCC-TATG
* *
19287597 CTTAGACTGGGGATGAACTCCTATG
1 CTTAGACTGGGAATCAACTCCTATG
19287622 C
1 C
19287623 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATCAACTCCTATG
Found at i:19288330 original size:26 final size:26
Alignment explanation
Indices: 19288292--19288344 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19288282 GGCTCAAAAT
19288292 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19288318 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19288344 C
1 C
19288345 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19288552 original size:158 final size:158
Alignment explanation
Indices: 19288317--19288719 Score: 481
Period size: 158 Copynumber: 2.6 Consensus size: 158
19288307 AACTCCATAT
**
19288317 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* *
19288382 CTGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAATCCCCC-CTATATGCTATCAATC
66 CTGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAATCCCCCTC-ATATGCTATCAATC
* * * * *
19288446 CTA-TTGCCGCAACCCTC-AGTCTGGTTTGA
130 C-AGCTGCCACAACCCTCGA-TCCGGCTGGA
* * ** * * * *
19288475 TCTTAGACATGGAATGAACTCCGTATGCATAAGTTAACCCATGAAACAAGCGTACGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * *
19288540 TTGGCCGAAGAGGCATAATACGCAAGCCGGGGATCGGCCCAATCCCCCTCGTGTGCTGTCAGTCC
66 CTGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAATCCCCCTCATATGCTATCAATCC
*
19288605 AGCTGCCACAACCCTCGATCCGGCTGGG
131 AGCTGCCACAACCCTCGATCCGGCTGGA
* *
19288633 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
*
19288698 CCGGCC-AGAGAGGCAGAATGCA
66 CTGGCCGA-AGAGGCAGAATGCA
19288720 TAATCCAAGG
Statistics
Matches: 200, Mismatches: 41, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
157 2 0.01
158 196 0.98
159 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CTGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAATCCCCCTCATATGCTATCAATCC
AGCTGCCACAACCCTCGATCCGGCTGGA
Found at i:19288833 original size:26 final size:26
Alignment explanation
Indices: 19288793--19288843 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19288783 CGATCCGATC
19288793 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
19288819 TTAGACTAGGG-ATGAACTCCGTATG
1 TTAGACT-GGGAATGAACTCCATATG
19288844 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:19289567 original size:159 final size:157
Alignment explanation
Indices: 19289201--19289597 Score: 417
Period size: 159 Copynumber: 2.5 Consensus size: 157
19289191 TCCGTATGCT
* * *
19289201 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCA
* * * **
19289266 GACGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCAGTCCCCCTGCGTGCTGTCGATCCTACT
66 GACGGAGAGGCAGAATGCGCAAATCGGGGATCGACCCAGTCCCCCTACGTGCTACCGATCCTACT
* * *
19289331 GCCACAACTCTCAGTCCGATCCGATCT
131 GCCACAACCCTCAGTCCGATCCGAGCG
* * * * * *
19289358 TAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAGCT
1 TAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
** * *
19289422 AGTTGGAGAGGCATAATGCGCAAATCGGGGATCGACCC-GATCCCCCTCTACGTGCTACCGGT-C
65 AGACGGAGAGGCAGAATGCGCAAATCGGGGATCGACCCAG-T-CCCC-CTACGTGCTACCGATCC
* * * * *
19289485 TCGCTGCCACAACCCTCGGTCC-AGCTGGGGCG
127 T-ACTGCCACAACCCTCAGTCCGATC-CGAGCG
* * * * *
19289517 TAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCC-
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCA
19289581 GATCGGAGAGGCAGAAT
66 GA-CGGAGAGGCAGAAT
19289598 ATACAAGCCG
Statistics
Matches: 194, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 87 0.45
158 9 0.05
159 95 0.49
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCA
GACGGAGAGGCAGAATGCGCAAATCGGGGATCGACCCAGTCCCCCTACGTGCTACCGATCCTACT
GCCACAACCCTCAGTCCGATCCGAGCG
Found at i:19290323 original size:26 final size:26
Alignment explanation
Indices: 19290294--19290344 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19290284 ATGCCGTCGG
19290294 TTAGACATGGAATGAACTCCGTATGT
1 TTAGACATGGAATGAACTCCGTATGT
19290320 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
19290345 CCAAAACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:19290836 original size:26 final size:26
Alignment explanation
Indices: 19290807--19290858 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19290797 CTAGTCCGAT
*
19290807 CTTAGACTGGTAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
19290833 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19290859 TCTAAGTCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19291566 original size:26 final size:26
Alignment explanation
Indices: 19291528--19291580 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19291518 GGCTCAAAAT
19291528 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19291554 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19291580 C
1 C
19291581 CTACGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19292737 original size:159 final size:159
Alignment explanation
Indices: 19292574--19292939 Score: 368
Period size: 159 Copynumber: 2.3 Consensus size: 159
19292564 CCTGCTGCAG
* * *
19292574 CAACCCTCGATCCGGTCAGATCTTAGACTGGGAATTAACTTCGTATGCCTAAGTCAACCCACGAA
1 CAACCCTCGATCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * *
19292639 ACGAGCGTGCGGGTGCTAAGCC-AGCCAAAGATGCATAATGCGCAAG-CTGGGGATCGACTC-GT
66 ACAAGCGTGCGGGCGCTAAGCCGA-CCAAAGAGGCAAAATGCGCAAGTC-GGGGATCGAC-CAGA
* *
19292701 TCCCC-CTTTGCGTGCTGTCGATCCCATTACCA
128 TCCCCTC-ATGCGTGCTGTCGATCCCACTACCA
* ** * *
19292733 CAACCCTC-AGTCCGG-CTGGGGCTTAGACAT-AGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CAACCCTCGA-TCCGGTC-AGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * ** *
19292795 GAAACAAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCTCAAGTCGGGGATCGACCAGA
63 GAAACAAGCGTGCGGGCGCTAAGCCGACCAAAGAGGCAAAATGCGCAAGTCGGGGATCGACCAGA
** * *
19292860 TCCCCTCATGCGTGCTGTCGATCCTGCTATCG
128 TCCCCTCATGCGTGCTGTCGATCCCACTACCA
* * * *
19292892 TAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGATCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGC
19292940 TTAGACTAGG
Statistics
Matches: 165, Mismatches: 32, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
158 4 0.02
159 155 0.94
160 6 0.04
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (159 bp):
CAACCCTCGATCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACAAGCGTGCGGGCGCTAAGCCGACCAAAGAGGCAAAATGCGCAAGTCGGGGATCGACCAGATCC
CCTCATGCGTGCTGTCGATCCCACTACCA
Found at i:19292942 original size:26 final size:26
Alignment explanation
Indices: 19292913--19292963 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19292903 TCGATCCGAT
19292913 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
19292939 CTTAGACTAGGGATGAACTCCGTAT
1 CTTAGACTAGGGATGAACTCCGTAT
19292964 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:19293333 original size:26 final size:26
Alignment explanation
Indices: 19293292--19293344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19293282 CCGGTCCGAT
19293292 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
19293318 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
19293344 C
1 C
19293345 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:19294406 original size:159 final size:157
Alignment explanation
Indices: 19294049--19294550 Score: 400
Period size: 159 Copynumber: 3.2 Consensus size: 157
19294039 AACTCCGTAT
* * * * *
19294049 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGCGTTCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGATCAG
* * * * * * * *
19294114 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTAGTCCCCCTGCGTGTTGTTGATCCT
66 CCGACCGAAAAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTGCGTGCTGCTGATCCC
**
19294179 ACTGCCACAACCCTCAGTTTGGTCCGA
131 ACTGCCACAACCCTCAGTCCGGTCCGA
* * * * *
19294206 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCAGGCGATGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGATCA
* * * * *
19294270 GCCGACCGAAAAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCT-CTATGTGCTGCTGG
65 GCCGACCGAAAAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTGC---GTGCTGCTGA
* ** * *
19294334 TCCCGCTGCCACAACCCTTGGTCCGG-CTTGG
127 TCCCACTGCCACAACCCTCAGTCCGGTC-CGA
* * * * * * *
19294365 GCTTAGACATGGAATGAACGCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGATCAG
** * * * * * * * * *
19294430 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGGTCCTCCCTGCGAGCTGCCGATCC
66 CCGACCGAAAAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCC-CCCTGCGTGCTGCTGATCC
* ** * ** * *
19294495 TACTGCTGCAACCCTCGGTTTGATCCAA
130 CACTGCCACAACCCTCAGTCCGGTCCGA
*
19294523 TCTTAGAC-TGTGAATGAACTCCGTATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
19294551 TTAGACATGG
Statistics
Matches: 267, Mismatches: 68, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
156 2 0.01
157 95 0.36
158 48 0.18
159 116 0.43
160 5 0.02
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGATCAG
CCGACCGAAAAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTGCGTGCTGCTGATCCC
ACTGCCACAACCCTCAGTCCGGTCCGA
Found at i:19294563 original size:26 final size:26
Alignment explanation
Indices: 19294524--19294576 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19294514 TTGATCCAAT
19294524 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
19294550 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGTGAATGAACTCCGTATG
19294576 C
1 C
19294577 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:19295052 original size:26 final size:26
Alignment explanation
Indices: 19295023--19295075 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19295013 CCGATCCCAT
19295023 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
19295049 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19295075 C
1 C
19295076 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19296115 original size:221 final size:220
Alignment explanation
Indices: 19295733--19296179 Score: 669
Period size: 221 Copynumber: 2.0 Consensus size: 220
19295723 TCATACAATG
* *
19295733 GTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACAAACCGTTTTCTATTTTTCCTTATTTTC
1 GTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACAAACCGTTTTCTATTTTTCCTGATTTTC
* * *
19295798 AAAATTTTTACGGTTCGGGATTTTTAAAAATTTTTTTAGAAAGTGTTTTGTATCCAAAGTTGGTA
66 AAAATTTTTACGGTTCGAGATTTTTAAAAATTTTTTTAGAAAGAGTTTTGTACCCAAAGTTGGTA
* * * * *
19295863 GAGGTGATTCTTGTATTTTTTTTGGCATGCACAAAAAAAATGAGCTAAAAACTCGAAGTGGAGAA
131 GAGGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAAATCAACTAAAAACTCGAAGTGGAGAA
*
19295928 GATTTTATGACCGTTTAAAAAAAGT
196 GATTTTATGACCGCTTAAAAAAAGT
* *
19295953 GTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACCCGTTTTCTATTTTTCGTGATTTTT
1 GTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACAAACCGTTTTCTATTTTTCCTGA-TTTT
* ** * * * *
19296018 GAAGCTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGT
65 CAAAATTTTTACGGTTCGAGATTTTTAAAAATTTTTTTAGAAAGAGTTTTGTACCCAAAGTTGGT
* *
19296083 AGAGGTGGTCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGGAGA
130 AGAGGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAAATCAACTAAAAACTCGAAGTGGAGA
* *
19296148 AGATTTTGTGACCGCTTGAAAAAAGT
195 AGATTTTATGACCGCTTAAAAAAAGT
19296174 GTCCCC
1 GTCCCC
19296180 ATGTCAGACA
Statistics
Matches: 202, Mismatches: 24, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
220 56 0.28
221 146 0.72
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (220 bp):
GTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACAAACCGTTTTCTATTTTTCCTGATTTTC
AAAATTTTTACGGTTCGAGATTTTTAAAAATTTTTTTAGAAAGAGTTTTGTACCCAAAGTTGGTA
GAGGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAAATCAACTAAAAACTCGAAGTGGAGAA
GATTTTATGACCGCTTAAAAAAAGT
Found at i:19302329 original size:26 final size:26
Alignment explanation
Indices: 19302291--19302343 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19302281 GGCTCAAAAT
19302291 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19302317 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19302343 C
1 C
19302344 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19302516 original size:26 final size:26
Alignment explanation
Indices: 19302487--19302539 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19302477 CCGGTCTGAT
19302487 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19302513 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19302539 C
1 C
19302540 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19303234 original size:159 final size:158
Alignment explanation
Indices: 19303049--19303392 Score: 366
Period size: 159 Copynumber: 2.2 Consensus size: 158
19303039 CCAGTCTGAT
** * ** * * *
19303049 CTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAACCCATGAAACGAGCGTTTGGGCATTGAAC
1 CTTAGACTGGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAAC
* * *
19303114 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CTGCGTGCTGCCAATCC
19303179 CGCTGCCACAACCCTTGATCCGGTTGGGG
130 CGCTGCCACAACCCTTGATCCGGTTGGGG
* * * * *
19303208 CTTAGACAT-GGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAA
* * * * * * *
19303272 TCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGGGTGTTGTCAATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCC
* * * *****
19303337 TGCTGCCGCAACCCTTGGTCCGGTCCAAT
130 CGCTGCCACAACCCTTGATCCGGTTGGGG
* *
19303366 CTTAGACTGGGAATGAGCTCCGTATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
19303393 TTAGACTGGG
Statistics
Matches: 149, Mismatches: 34, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.01
158 56 0.38
159 91 0.61
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAAC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCCC
GCTGCCACAACCCTTGATCCGGTTGGGG
Found at i:19303412 original size:25 final size:26
Alignment explanation
Indices: 19303366--19303417 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19303356 CCGGTCCAAT
*
19303366 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19303392 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19303417 C
1 C
19303418 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19304128 original size:26 final size:25
Alignment explanation
Indices: 19304087--19304138 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19304077 GGCTCAAACT
19304087 CTTAGACTCGAATGAACTCCATATG
1 CTTAGACTCGAATGAACTCCATATG
* *
19304112 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TCGAATGAACTCCATATG
19304138 C
1 C
19304139 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
CTTAGACTCGAATGAACTCCATATG
Found at i:19304466 original size:158 final size:156
Alignment explanation
Indices: 19304111--19304559 Score: 415
Period size: 158 Copynumber: 2.8 Consensus size: 156
19304101 AACTCCATAT
* * * *
19304111 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAAC-GAGTGTGCAGGCGCTCA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GTGTGCGGGCGCTCA
* ** * * * ** *
19304175 CTCGGTTAGAGAGGCAGAATGCTCAAGCCGGGGATCGACCCAGTCCCTTTCTGCGTGCTGCCGAT
65 ATCGGTCGGAGAGGCAGAATGCT-AAGTC-GGGATCGGCCCGGTCCC-CCCTGCGTGCTGCCAAT
*** * **
19304240 CCCATTACCACAACCCTCGGTCCTACTGGG
127 CCTGCTACCACAACCCTCGATCCTACTGAA
* * * *
19304270 GCTTAGATATGTAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGTGTACGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGTGTGCGGGCGCTCAA
*
19304335 TCGGTCGGAGAGGCAGAATGCGTAAGTCGGGTATCGGCCCGGTCCCCCCTACGTGCTGCCAATCC
66 TCGGTCGGAGAGGCAGAATGC-TAAGTCGGG-ATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCC
*
19304400 TGCTACCACAATCCTCGATCC-AGTCT-AA
129 TGCTACCACAACCCTCGATCCTA--CTGAA
* * * *
19304428 TCTTAGAT-TGGGAATGAACTCCGTATGCCTAAGTCAACCC-TCGAAACAAGCGTGCGGGCGCTC
1 GCTTAGATAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAT-GAAACAGGTGTGCGGGCGCTC
* * * * * * * *
19304491 AACCGATCGGAGAGGTAG-ATGCACAAGTCGACGATTGGCCCGGTCCCCCTTGCGTGCTGCCTAT
64 AATCGGTCGGAGAGGCAGAATGC-TAAGTCG-GGATCGGCCCGGTCCCCCCTGCGTGCTGCCAAT
19304555 CCTGC
127 CCTGC
19304560 GGCTGATCCT
Statistics
Matches: 240, Mismatches: 42, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
157 45 0.19
158 101 0.42
159 92 0.38
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGTGTGCGGGCGCTCAA
TCGGTCGGAGAGGCAGAATGCTAAGTCGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCCTG
CTACCACAACCCTCGATCCTACTGAA
Found at i:19304636 original size:26 final size:26
Alignment explanation
Indices: 19304598--19304650 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19304588 CCAATCCAAT
19304598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19304624 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19304650 C
1 C
19304651 CTAAGCCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19304919 original size:159 final size:159
Alignment explanation
Indices: 19304624--19305059 Score: 359
Period size: 159 Copynumber: 2.7 Consensus size: 159
19304614 ACTCCGTATG
** *
19304624 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACAAAACGAGCATGCGAGCGCTCAGC
** * * **
19304689 CGGTCGGAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCAGTCCCCACCTGCGTGCTGTGGATCC
66 CGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAGTCCCCACCTGCGTGATGCAGATCC
**
19304754 TGCTACCACAACTCTTAGTTCGATCTGAT
131 CCCTACCACAACTCTTAGTTCGATCTGAT
* ** * *
19304783 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-GACCCACAAAACGAGTGTGCGAGTGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAG-CCCACAAAACGAGCATGCGAGCGCTCA
* * ** * *
19304846 GCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGGTCCCC-CTCTGCGTGATGCCAG
64 GCCGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAGTCCCCAC-CTGCGTGATG-CAG
* * **
19304910 -TCCCCCTACCACAGCACTC-GA-TCCGAT-TGGGG
127 ATCCCCCTACCACA--ACTCTTAGTTCGATCT-GAT
* *** * * * *
19304942 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATGCACGATAGGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACAAAACGAGCATGCGAGCGCTCAGC
** * * * ** *
19305007 CGGTCGAAAAGGCAGAAT-ACGTAAGCGGGGGATCGGCCCGGTCCCC-CCTGCGT
66 CGACCGGAGAGGCAGAATGA-GCAAGCCAGGGATCGGCCCAGTCCCCACCTGCGT
19305060 ACGGTCGATC
Statistics
Matches: 219, Mismatches: 48, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
158 10 0.05
159 202 0.92
160 3 0.01
161 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACAAAACGAGCATGCGAGCGCTCAGC
CGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAGTCCCCACCTGCGTGATGCAGATCC
CCCTACCACAACTCTTAGTTCGATCTGAT
Found at i:19305747 original size:11 final size:11
Alignment explanation
Indices: 19305731--19305763 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
19305721 CGGTTAGAAT
19305731 CTCCGGTGATG
1 CTCCGGTGATG
19305742 CTCCGGTGATG
1 CTCCGGTGATG
*
19305753 CTCCAGTGATG
1 CTCCGGTGATG
19305764 GTGCCTCGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.12, C:0.27, G:0.33, T:0.27
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:19306205 original size:26 final size:26
Alignment explanation
Indices: 19306176--19306228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19306166 CCGGTCTAAT
19306176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19306202 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19306228 C
1 C
19306229 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19306929 original size:26 final size:26
Alignment explanation
Indices: 19306888--19306943 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
19306878 CCGGTCTAAT
*
19306888 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19306914 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
19306940 CTTA
1 CTTA
19306944 TGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19307284 original size:26 final size:26
Alignment explanation
Indices: 19307255--19307307 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19307245 TCGATCTGAT
*
19307255 CTTAGATC-GGGAATGAACTTCGTATG
1 CTTAGA-CAGGGAATGAACTCCGTATG
*
19307281 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
19307307 C
1 C
19307308 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:19308190 original size:26 final size:26
Alignment explanation
Indices: 19308161--19308212 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19308151 GTTGGTCTGA
19308161 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
* *
19308187 TCTTAGACTGGGGATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
19308213 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:19308666 original size:158 final size:156
Alignment explanation
Indices: 19308405--19308896 Score: 431
Period size: 158 Copynumber: 3.1 Consensus size: 156
19308395 GCTTATACAT
* * *
19308405 GGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAGCCGACCGGAG
1 GGAATGAACT-CTTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCACTCAGCCGACCGGAG
* * * * * * *
19308470 AGGCAGAATGCGTAAGCCTGGGACCGACCTAATCCCCCTTTGGTACTGTCGATCCTGCTACCACA
65 AGGCAGAATGCGCAAGCCGGGGATCGGCC-GATTCCCCTTTGGTACTGTCGATCCTGCTGCCACA
19308535 ACCCTCGATCCGATCAGATCTTAGACTA
129 ACCCTCGATCCGATCAGATCTTAGACTA
* * * *
19308563 GGAATGAACTCTATATGCCTAAGTCAACCCATGAAATGAACATTCGGGCACTGAGCC-AGCCGGA
1 GGAATGAACTCT-TATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCACTCAGCCGA-CCGGA
* * * *** * *
19308627 GAAGCATAATGTGCAAGCCGGGGATCGGCTCGATTCCCCTCTACATACTG-CCACTCCCGCTGCC
64 GAGGCAGAATGCGCAAGCCGGGGATCGGC-CGATTCCCCT-TTGGTACTGTCGA-TCCTGCTGCC
* ** **
19308691 ACAACCCTCTG-TTCGATTGGGGCTTAGAC-A
126 ACAACCCTC-GATCCGATCAGATCTTAGACTA
* * * * * * *
19308721 TGGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGACGTGCGGGCGCTCAACCGACCAGA
1 -GGAATGAACT-CTTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCACTCAGCCGACCGGA
* * ** * * *
19308786 GAGGTAGAATGCGCAAGCCGGGGATCGGCCCG-GTCCCCCCTGCGTGCTGTCGATCTTGCTGCCG
64 GAGGCAGAATGCGCAAGCCGGGGATCGG-CCGATTCCCCTTTG-GTACTGTCGATCCTGCTGCCA
*
19308850 CAACCCTCGATCC-AGTCCGATCTTAGA-TA
127 CAACCCTCGATCCGA-TCAGATCTTAGACTA
19308879 GGAATGAACTCTGTATGC
1 GGAATGAACTCT-TATGC
19308897 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 58, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 20 0.08
158 121 0.47
159 114 0.44
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCTTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCACTCAGCCGACCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGGCCGATTCCCCTTTGGTACTGTCGATCCTGCTGCCACAAC
CCTCGATCCGATCAGATCTTAGACTA
Found at i:19309665 original size:159 final size:157
Alignment explanation
Indices: 19309399--19309739 Score: 445
Period size: 159 Copynumber: 2.2 Consensus size: 157
19309389 GGTCTGATCC
* * * *
19309399 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAACCA
* * * *
19309464 GCAGGAGAGGCATAATGCACAAGTCGAGGATTGGCTCGGTCCCCCTCTGCGTGCTGTCGGTCCCA
66 GCAGGAGAGGCAGAATGCACAAGTCGAGGATTCGATCGGTCCCCC-CTGCGTGCTGTCGATCCCA
19309529 CTACCACAACCCTCGGTCCG-GCTGGAGCT
130 C-ACCACAACCCTCGGTCCGAGCT-GAGCT
* *
19309558 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAGCTCAACC
1 TAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAACC
* * ** * *
19309622 GGCTGGAGAGGCAGAATGTGCAAGTCGGGGA-TCGATCGGGTCCCCCCTGCGTGCTGTCGATCCT
65 AGCAGGAGAGGCAGAATGCACAAGTCGAGGATTCGATC-GGTCCCCCCTGCGTGCTGTCGATCCC
* * *
19309686 ACACCGCAACCCTCGGTCCGATCTGATCT
129 ACACCACAACCCTCGGTCCGAGCTGAGCT
19309715 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
19309740 TTAGAGTGAG
Statistics
Matches: 158, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
156 1 0.01
157 43 0.27
158 24 0.15
159 89 0.56
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAACCA
GCAGGAGAGGCAGAATGCACAAGTCGAGGATTCGATCGGTCCCCCCTGCGTGCTGTCGATCCCAC
ACCACAACCCTCGGTCCGAGCTGAGCT
Found at i:19309742 original size:26 final size:26
Alignment explanation
Indices: 19309713--19309764 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19309703 CCGATCTGAT
19309713 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
19309739 CTTAGAGTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
19309765 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:19310815 original size:26 final size:26
Alignment explanation
Indices: 19310779--19310831 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19310769 CCGATCCTAT
*
19310779 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19310805 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19310831 C
1 C
19310832 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19311087 original size:355 final size:341
Alignment explanation
Indices: 19310436--19311120 Score: 799
Period size: 355 Copynumber: 2.0 Consensus size: 341
19310426 TGGCTCAAAC
* *
19310436 TCTTAGACTGGGAATGAACTCTGTATGCTTATACATGGAATGAATTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * *
19310501 CACGAAACGAGCGTGCGGGCGCTCAGCCGACAAGAGAGATAGAATGTGCAAGTCGGGGATCGGCT
66 CACGAAACGAGCGTACGGGCGCTCAGCCGACAAGAGAGATAGAATGCACAAGCCAGGGATCGGCT
* * * * * ** **
19310566 CGGTCCTCCTCTACGTGCTGCCGGTCCTGTTGCCACAACCCTCATTTTGGTTGGGGCTTAGACAT
131 CGGTCCTCCCCTACGTACTGCCGGTCCAGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACAT
* * *
19310631 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCTGACCGGAGA
196 GAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTACGGGCACTCAGCCGACCGGAGA
* * *
19310696 GGCAGAATACGCAAGCTGGGGATCGGCCTAGTCCCCCCTGCGTGCTACCGATCTTACTGCCGCAA
261 GGCAGAATACGCAAGCTGGGGATCGACCTAGT-CCCCCTGCGTGCTACCGATCCTACTACCGCAA
19310761 CCCTCGATCCGATCCTA
325 CCCTCGATCCGATCCTA
* *
19310778 TCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * *
19310842 CCACGAAACGAGCGTACGGGCGCACTGCCGGTTGGAGAGGCCGATCGAG-GAGGTAGAATGCATA
65 CCACGAAACGAGCGTACGGGCG--CT--C--------A-GCCGA-CAAGAGAGATAGAATGCACA
* *
19310906 AGCCAGGGATCAGGC-CGGTCC-CCCCTATGTACTGCTGGTCCAGCTGCCACAACCCTCAGTCCG
116 AGCCAGGGATC-GGCTCGGTCCTCCCCTACGTACTGCCGGTCCAGCTGCCACAACCCTCAGTCCG
* *
19310969 ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTAAACCCACGAAATGGGCGTACAGGG
180 ACTGGGGCTTAGACAT-GAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTAC-GGG
* * * * *
19311034 -GCTCAGCCGACCGGAGGGGCAGAATGCGTAAG-TCGGGGATCGA-CTCGGTCCCCCTGCGTGCT
243 CACTCAGCCGACCGGAGAGGCAGAATACGCAAGCT-GGGGATCGACCT-AGTCCCCCTGCGTGCT
*
19311096 ATCGATCCTACTACCGCAACCCTCG
306 ACCGATCCTACTACCGCAACCCTCG
19311121 TCTTAGACTG
Statistics
Matches: 286, Mismatches: 37, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
341 1 0.00
342 79 0.28
344 2 0.01
346 1 0.00
354 86 0.30
355 108 0.38
356 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (341 bp):
TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTACGGGCGCTCAGCCGACAAGAGAGATAGAATGCACAAGCCAGGGATCGGCT
CGGTCCTCCCCTACGTACTGCCGGTCCAGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACAT
GAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTACGGGCACTCAGCCGACCGGAGA
GGCAGAATACGCAAGCTGGGGATCGACCTAGTCCCCCTGCGTGCTACCGATCCTACTACCGCAAC
CCTCGATCCGATCCTA
Found at i:19311858 original size:26 final size:26
Alignment explanation
Indices: 19311820--19311872 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19311810 GGCTAAAACT
19311820 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19311846 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19311872 C
1 C
19311873 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19312047 original size:26 final size:26
Alignment explanation
Indices: 19312003--19312055 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19311993 CCGATCCGAT
*
19312003 CTTAGACTAGGAATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
19312029 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
19312055 C
1 C
19312056 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:19312800 original size:26 final size:26
Alignment explanation
Indices: 19312771--19312823 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19312761 CCAGCCCGAT
*
19312771 CTTAGA-ATGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACACCATATG
*
19312797 CTTATACATGGAATGAACACCATATG
1 CTTAGACATGGAATGAACACCATATG
19312823 C
1 C
19312824 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCATATG
Found at i:19313875 original size:159 final size:158
Alignment explanation
Indices: 19313373--19314343 Score: 745
Period size: 159 Copynumber: 6.0 Consensus size: 158
19313363 TATCGATCCC
*** * *
19313373 GCTGTCGGTCCTACTGCTACAACCCTCGGTATGACTGGGGCTTAGACATGGAATGAACTCCGC-A
1 GCTGTCGGTCCCGTTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCC-CTA
** * * * *
19313437 TGCCTAAGGTAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCTGGAGAGGTAGAATGCATAA
65 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAA
* * *
19313502 GCCGGGGA-CCGACCCGGTCCCCCCTTGCGT
130 GCCGGGGATCAG-CCCGAT-CCCCTTTGCGT
* * * * * ** * *
19313532 GCTGTCGATCCTGTTACCACAACCCTCGATCTGGTCT-GATCTTAGAC-TAGGAATGAACTTCGT
1 GCTGTCGGTCCCGTTGCCACAACCCTCGGTCT-GACTGGGGCTTAGACAT-GGAATGAACTCCCT
** * * * * * * * ***
19313595 ATGCCTAAGTTAAGCCACGAAATGAGCGTGCGGGCACTGAGCCGACCGGAAAGGCATAATGTGTA
64 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACA
* ** *
19313660 AGCCTCGGGATTGGCCTGATCCCCTTCTGCGT
129 AGCC-GGGGATCAGCCCGATCCCCTT-TGCGT
** * * *
19313692 GCTGTCAATCCCGCTGCCGCAACCCTCGGTCTGACTGGGGCTTAGATATGGAATGAACTCCCTAT
1 GCTGTCGGTCCCGTTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * * * *
19313757 GCCTAAGCCAACCCATGAAACGGGCATACGGGTGCTCATCCGGTCGGAGAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAG
* * *
19313822 CTGGGGATTAGCCCGATCCTCCTTTGCAT
131 CCGGGGATCAGCCCGATCC-CCTTTGCGT
** **
19313851 GCTGTCGGTCCCGTTGCCACAACCCTCAAT-TCGGTTGGGGCTTAGACATGGAATGAACTCCCTA
1 GCTGTCGGTCCCGTTGCCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * * * *
19313915 CGCCTAAGCTAACCCATGAAACGAACGTACGGGCGCTCAGCAGGCCGGAGAGGCA-AATGTACAA
65 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAA
* * ** *
19313979 GCTGGGGATC-GACCCGGTCCCCCCTGTGT
130 GCCGGGGATCAG-CCCGATCCCCTTTGCGT
* * * * **
19314008 GCTGCCGATCCTACTGCTGGTCTTGCTACCGTAACCCTCGGTCTGA-TCCGATCTTAGAC-TGGG
1 GCTGTCGGT-C--C--C--G--TTGCCA-C--AACCCTCGGTCTGACT-GGGGCTTAGACAT-GG
* * * * * *
19314071 AATGAAATCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGAGCTCAGCCAGCCAGAGAG
52 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
* * * * *
19314136 GTAGAATGCGCAGGCCGGGGATCAGCCCGGTCCCTCTCTGCGT
117 GCAGAATGCACAAGCCGGGGATCAGCCCGATCCC-CTTTGCGT
* * * * *
19314179 GCTGCCAGTCCCGTTGCCACAACCCTCTGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGGTCCCGTTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * *
19314244 GCCTAAGCCAAGCCACGAAACGGGCGTGCGGGCACTCAACCGGCCGGAGAGGCTGAATGCACATG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAG
**
19314309 CCGGGGATCAGCCCGATCCCCCCTGCGT
131 CCGGGGATCAGCCCGATCCCCTTTGCGT
19314337 GCTGTCG
1 GCTGTCG
19314344 ATCCTGCTGT
Statistics
Matches: 636, Mismatches: 145, Indels: 63
0.75 0.17 0.07
Matches are distributed among these distances:
157 13 0.02
158 38 0.06
159 330 0.52
160 118 0.19
161 3 0.00
162 6 0.01
164 2 0.00
166 6 0.01
167 1 0.00
168 3 0.00
169 76 0.12
170 26 0.04
171 14 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTGTCGGTCCCGTTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAG
CCGGGGATCAGCCCGATCCCCTTTGCGT
Found at i:19314973 original size:159 final size:158
Alignment explanation
Indices: 19314561--19315000 Score: 458
Period size: 158 Copynumber: 2.8 Consensus size: 158
19314551 GGTCTTGCTA
* *
19314561 CCACAACCCTCGGTCCGACTAGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * *
19314626 GAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCACAAGTCAGGGATCGGCCTGG
65 GAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGA
* * * *
19314691 TCCCTCCTGCGTGACGTCGATCCTACTGT
130 TCCCTCCTACATGACGCCGATCCTACTGG
* * * * ** *
19314720 CC-CAACCCTTGGTTCAGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCA
1 CCACAACCC-TCGATCCGACTGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * *
19314783 TGAAACGAGCGTACGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCG
64 TGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCG
19314848 ATCCCTCTCTACATG-CTGCCTGAT-CTAC-GG
129 ATCCCTC-CTACATGAC-GCC-GATCCTACTGG
* * *
19314878 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * * *
19314943 GAAACGGGCATGTGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAACCGGGGATC
65 GAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATC
19315001 GACCTGGTCC
Statistics
Matches: 228, Mismatches: 45, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 114 0.50
159 109 0.48
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
CCACAACCCTCGATCCGACTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
AAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGAT
CCCTCCTACATGACGCCGATCCTACTGG
Found at i:19315012 original size:159 final size:158
Alignment explanation
Indices: 19314561--19315013 Score: 468
Period size: 159 Copynumber: 2.9 Consensus size: 158
19314551 GGTCTTGCTA
* *
19314561 CCACAACCCTCGGTCCGACTAGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * *
19314626 GAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCACAAGTCAGGGATCGGCCTGG
65 GAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCTGG
* * * *
19314691 TCCCTCCTGCGTGACGTCGATCCTACTGT
130 TCCCTCCTACATGACGCCGATCCTACTGG
* * * * ** *
19314720 CC-CAACCCTTGGTTCAGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCA
1 CCACAACCC-TCGATCCGACTGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
19314783 TGAAACGAGCGTACGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGTAAGCCGGGGATC-AGCCC
64 TGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCT
*
19314847 GATCCCTCTCTACATG-CTGCCTGAT-CTAC-GG
128 GGTCCCTC-CTACATGAC-GCC-GATCCTACTGG
* * *
19314878 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * * *
19314943 GAAACGGGCATGTGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAACCGGGGATCGACCTGG
65 GAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCTGG
19315008 TCCCTC
130 TCCCTC
19315014 ATGCGTGCTG
Statistics
Matches: 237, Mismatches: 47, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 113 0.48
159 118 0.50
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CCACAACCCTCGATCCGACTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
AAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCTGGT
CCCTCCTACATGACGCCGATCCTACTGG
Found at i:19315089 original size:26 final size:26
Alignment explanation
Indices: 19315060--19315112 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19315050 CCGGTTAGAT
19315060 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19315086 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19315112 C
1 C
19315113 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19315601 original size:668 final size:670
Alignment explanation
Indices: 19314037--19315816 Score: 2093
Period size: 668 Copynumber: 2.6 Consensus size: 670
19314027 GTCTTGCTAC
* * *
19314037 CGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCAACCCACG
1 CGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACA
* * * * * * * * * *
19314102 AAACGAACGTGCGGGAGCTCAGCCAGCCAGAGAGGTAGAATGCGCAGGCCGGGGATCAGCCCGGT
65 AAACGAGCGTACGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGAT
* * *
19314167 CCCTCTCTGCGTGCTGCCAGTCCCGTTGCCACAACCCTCT-GTCCGGCTGGGGCTTAGACATGGA
130 CCCTCTCTACGTGCTGCCGGTCTCG-TGCCACAACCCT-TGGTCCGGCTGGGGCTTAGACATGGA
* ** **
19314231 ATGAACTCCCTATGCCTAAGCCAAGCCACGAAACGGGCGTGCGGGCACTCAACCGGCCGGAGAGG
193 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGTCGGCCGGAGAGG
* * * * * *
19314296 CT-GAATGCACATGCCGGGGATC-AGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAA
258 -TAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCATGCGTGCTGTCGAT-CTGCTATCGCAA
* * *
19314359 CCTCGATCTGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTCCA
320 CCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TTGGGATGAACTCCG
* * * *
19314424 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGAGGCGGTCGGAGA
384 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA---GACC---GA---GGTCGGAGA
* * * ** * **
19314489 GGCATAATGCGCAAGCTGAGGATCAGCCCGATCCCTTTCTGTGTGTTGTCGATCGCGCTGCCGGT
440 GCCAGAATGCACAAGCTGAGGATCAGCCCGATCCCTCCCTGCGTGTACTCGATCGCGCTGCCGGT
* * * *
19314554 CTTGCTACCACAACCCTCGGTCCGACTAGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCC
505 CCTGCTACCACAACCCTCGGTCCGACCAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * ** * * * *
19314619 AACCCATGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCACAAGTCAGGGATC
570 AACCCACGAAACGAGCATGCGGGCACTCAGCCGACCGAAGACGCAAAATGCACAAGCCAGGGACC
* * *
19314684 GGCCTGGTCCCTCCTGCGTGACGTCGATCCTACTGT
635 GGCCCGATCCCTCCTGCGTGACATCGATCCTACTGT
** * * *
19314720 CCCAACCCTTGGT-TCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC-CA
1 CGTAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCACA
*
19314783 TGAAACGAGCGTACGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCG
65 --AAACGAGCGTACGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCG
* * * *
19314848 ATCCCTCTCTACATGCTGCCTGATCTACG-GCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
128 ATCCCTCTCTACGTGCTGCC-GGTCT-CGTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATG
* * *
19314912 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTGGGTGCTCAGTCGGTCGGAGA
191 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGTCGGCCGGAGA
* * * * *
19314977 GGTAGAATGCGCAAACCGGGGATCGACCTGGTCCCTCATGCGTGCTGTCGATCTTGCTATCACCA
256 GGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCATGCGTGCTGTCGATC-TGCTATCGCAA
* *
19315042 CACTCGATCCGGTTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCC
320 C-CTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATT-GGGATGAACTCC
* *
19315107 GTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAG-CC-A-GTCGGATAGCCAGAAT
383 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGACCGAGGTCGGAGAGCCAGAAT
* * *
19315169 GCATAAGCTG-GGATC-GACCCGGTCCC-CCCTGCGTGCTACT-GATC-CTGCTGCTGGTCCTGC
448 GCACAAGCTGAGGATCAG-CCCGATCCCTCCCTGCGTG-TACTCGATCGC-GCTGCCGGTCCTGC
* * *
19315229 TATCGCAACCCTCGGTCCGATCCA-ATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
510 TACCACAACCCTCGGTCCGA-CCAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
19315293 CACGAAACGAGCATGCGGGTACTCAGTCGACCGAAGACGTAGAATGCATAAGCCAGGGACCGGCC
574 CACGAAACGAGCATGCGGGCACTCAGCCGACCGAAGACGCAAAATGCACAAGCCAGGGACCGGCC
*
19315358 CGATCCC-CCTGCGTG-CTATCGATCCTGCTGT
639 CGATCCCTCCTGCGTGAC-ATCGATCCTACTGT
* * * *
19315389 CGTAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGTACTTCGCATGCCTAAGTCAACCACAA
1 CGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCACAA
* * * * * * * *
19315454 AATGAGGGTTCGGTCGCTGAGCCGGTCGGAGAGGCATAATCCGCAAGCCGAGGATCGGCCCGATC
66 AACGAGCGTACGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATC
* *
19315519 CCTCTCTACGTGCTGTCGGTCTCGCTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAAT
131 CCTCTCTACGTGCTGCCGGTCTCG-TGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAAT
* * *
19315584 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGATGCTCAGTCGGCCAGAGAGGCA
195 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGTCGGCCGGAGAGGTA
* * * * *
19315649 GAATGCGCAAGTCAGGGATCGACCCGGTCCCCCATGCGTGCTGCCGATCCGACTACCGCAACCCT
260 GAATGCGCAAGCCGGGGATCGACCCGGTCCCCCATGCGTGCTGTCGATCTG-CTATCGCAA-CCT
* *
19315714 CGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATG
323 CGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGATGAACTCCGTATG
*
19315779 CCTAAGTCAACCCACGAAATGAGC-TGAAGGGTGCTCAG
388 CCTAAGTCAACCCACGAAATGAGCGTG-CGGGTGCTCAG
19315817 TCGACCAGAG
Statistics
Matches: 937, Mismatches: 137, Indels: 62
0.82 0.12 0.05
Matches are distributed among these distances:
666 4 0.00
667 55 0.06
668 263 0.28
669 71 0.08
670 139 0.15
671 17 0.02
672 21 0.02
676 1 0.00
680 2 0.00
681 2 0.00
682 6 0.01
683 259 0.28
684 95 0.10
685 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (670 bp):
CGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCACAA
AACGAGCGTACGGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATC
CCTCTCTACGTGCTGCCGGTCTCGTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGTCGGCCGGAGAGGTAG
AATGCGCAAGCCGGGGATCGACCCGGTCCCCCATGCGTGCTGTCGATCTGCTATCGCAACCTCGA
TCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGATGAACTCCGTATGCCT
AAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGACCGAGGTCGGAGAGCCAGAATGCACAAGC
TGAGGATCAGCCCGATCCCTCCCTGCGTGTACTCGATCGCGCTGCCGGTCCTGCTACCACAACCC
TCGGTCCGACCAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
ATGCGGGCACTCAGCCGACCGAAGACGCAAAATGCACAAGCCAGGGACCGGCCCGATCCCTCCTG
CGTGACATCGATCCTACTGT
Found at i:19315732 original size:158 final size:153
Alignment explanation
Indices: 19315232--19315754 Score: 428
Period size: 158 Copynumber: 3.3 Consensus size: 153
19315222 GTCCTGCTAT
*
19315232 CGCAACCCTCGGTCCGATCCAATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CGCAACCCTCGGTCCGATCCAATCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * ** *
19315296 GAAACGAGCATGCGGGTACTCAGTCGACCGAAGACGTAGAATGCATAAGCCAGGGACCGGCCCGA
65 GAAACGGGCGTGC-GGTGCTCAGTCGGCCG-AGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGA
* *
19315361 TCCCCCTGCGTGCTATCGATCCTGCTGT
127 TCCCCCTGCGTGCTGTCGATCC-GCTGC
* * * * *
19315389 CGTAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGTACTTCGC-ATGCCTAAGTCAA-CCAC
1 CGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAAC-TCCCTATGCCTAAGCCAACCCAC
* * * * * * * * *
19315452 AAAATGAGG-GTTCGGTCGCTGAGCCGGTCGGAGAGGCATAATCCGCAAGCCGAGGATCGGCCCG
65 GAAACG-GGCGTGCGGT-GCTCAGTCGG-CCGAGAGGCAGAATGCGCAAGCAG-GGATCGGCCCG
* *
19315516 ATCCCTCTCTACGTGCTGTCGGTCTCGCTGC
126 ATCCC-C-CTGCGTGCTGTCGATC-CGCTGC
* * * ****
19315547 CACAACCCTTGGTCC-AGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CGCAACCCTCGGTCCGATC-CAATCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCA
*
19315610 CGAAACGGGCGTGCGGATGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCG
64 CGAAACGGGCGTGCGG-TGCTCAGTCGGCC-GAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCG
* * *
19315675 GTCCCCCATGCGTGCTGCCGATCCGACTAC
126 ATCCCCC-TGCGTGCTGTCGATCCG-CTGC
* * * * *
19315705 CGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCCTATGC
19315755 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 65, Indels: 41
0.73 0.17 0.11
Matches are distributed among these distances:
155 5 0.02
156 44 0.16
157 61 0.22
158 113 0.40
159 54 0.19
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (153 bp):
CGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACG
AAACGGGCGTGCGGTGCTCAGTCGGCCGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCC
CCTGCGTGCTGTCGATCCGCTGC
Found at i:19315774 original size:25 final size:26
Alignment explanation
Indices: 19315728--19315779 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19315718 CTGGTTCGAT
19315728 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19315754 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19315779 C
1 C
19315780 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19316150 original size:26 final size:26
Alignment explanation
Indices: 19316121--19316173 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19316111 CCGATCCGGT
*
19316121 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATAAACTCCATATG
19316147 CTTAGACATGGAATAAACTCCATATG
1 CTTAGACATGGAATAAACTCCATATG
19316173 C
1 C
19316174 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:19317878 original size:159 final size:156
Alignment explanation
Indices: 19317365--19317964 Score: 582
Period size: 159 Copynumber: 3.8 Consensus size: 156
19317355 AACTTTGTAT
* *
19317365 GCTTGGACATGGAATCAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCT-CTCA
1 GCTTAGACATGGAATGAAC-TCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-TGCTCA
* * * * * ** *
19317429 GTCGGGCGGAGAGGCAGAATGCGCAAGCCGGGGAATGGCACGATCCCTCTCTATGTGTTGTCGGT
64 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGATCCCT-TCTGCGTGCTGTC-GT
* * *
19317494 CCTGCTGCCACAACCCTTAGTCCGGTTGGG
127 CCTACTGCCACAACCCTCAGTCCGGCTGGG
* ** * * *
19317524 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATAAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * *
19317589 CCTGCCAGAAAGGTAGAATGCGCAAGCCGGGGATTGGCCTGGTTCCC-CCTGCATGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCC-CGATCCCTTCTGCGTGCTGTCG-TC
*** * * *
19317653 CTACT-TTGCAACCCTCGGTCTGGTCT-GA
128 CTACTGCCACAACCCTCAGTCCGG-CTGGG
* * * *
19317681 TCTTAGAC-TGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * *
19317745 GCCGGTCGGAGAGGTATAATGCACAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTGTCAGT
64 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGAT-CCCTTCTGCGTGCTGTC-GT
* *
19317810 CCCACTGCCACAACCCTCAGTCCAGCTGGG
127 CCTACTGCCACAACCCTCAGTCCGGCTGGG
* * *
19317840 GCTTAGACATGGAATGAACTCGCTATCCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
19317905 CCGGCCGGAGAGGCAGAACGCACAAGCCGAGGATTGG-CTGATCCCTCCTGCGTGCTGTCG
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGATCCCTTCTGCGTGCTGTCG
19317965 ATCCGGCTTT
Statistics
Matches: 351, Mismatches: 76, Indels: 31
0.77 0.17 0.07
Matches are distributed among these distances:
156 5 0.01
157 116 0.33
158 40 0.11
159 184 0.52
160 6 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGATCCCTTCTGCGTGCTGTCGTCCTA
CTGCCACAACCCTCAGTCCGGCTGGG
Found at i:19318033 original size:26 final size:26
Alignment explanation
Indices: 19317997--19318047 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19317987 CTGGTCCGAT
*
19317997 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
19318023 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19318048 GCCTAAGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:19320142 original size:26 final size:26
Alignment explanation
Indices: 19320113--19320165 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19320103 CCGGTCCGAT
19320113 CTTAGACTGGGA-ATGAACTCCGTATG
1 CTTAGA-TGGGAGATGAACTCCGTATG
*
19320139 CTTAGATTGGAGATGAACTCCGTATG
1 CTTAGATGGGAGATGAACTCCGTATG
19320165 C
1 C
19320166 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGAGATGAACTCCGTATG
Found at i:19320530 original size:26 final size:26
Alignment explanation
Indices: 19320493--19320545 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19320483 CTGGTTTGAT
*
19320493 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19320519 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19320545 C
1 C
19320546 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19320819 original size:158 final size:158
Alignment explanation
Indices: 19320657--19321015 Score: 352
Period size: 158 Copynumber: 2.3 Consensus size: 158
19320647 CTGCTACCGC
* *
19320657 AACCCTCAGTTCGGTTCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
1 AACCCTCAGTTCGGTTCGATCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
* * * * * *
19320722 -TGAGCGTACGGGCACTGAGCCAATCGGAGAGGCATAATACGCAAG-CAAGGGATCAG-CCTGGT
66 CAG-GCGTACAGGCACTGAACCAACCGGAGAGGCAAAATACGCAAGTC-AGGGACCAGTCC-GGT
* *
19320784 CCCCCTCTGCGTG-TGTCGGTCCCACTGCCAT
128 CCCCC-CTGCGTGCTGCCGATCCCACTGCCAT
* * * * * * *
19320815 AACCCT-AGCTCTAGCTGGGTCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 AACCCTCAGTTC-GGTTCGATCTTAGA-ATGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
* * *
19320878 AACAGGCGTACAGGCACTTAACCAACCGGAGAGGCAAAATTCGCAAGTCGGGGACCAGTCCGGTC
64 AACAGGCGTACAGGCACTGAACCAACCGGAGAGGCAAAATACGCAAGTCAGGGACCAGTCCGGTC
** *
19320943 CCCCCTGCGTGCTGCCGATCCTGCTGCCGT
129 CCCCCTGCGTGCTGCCGATCCCACTGCCAT
* * * * * * *
19320973 AGCCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCAT
1 AACCCTCAGTTCGGTTCGATCTTAGAATGGGAATGAACTCCAT
19321016 TTGCTTAGAC
Statistics
Matches: 157, Mismatches: 36, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
157 12 0.08
158 138 0.88
159 7 0.04
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
AACCCTCAGTTCGGTTCGATCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
CAGGCGTACAGGCACTGAACCAACCGGAGAGGCAAAATACGCAAGTCAGGGACCAGTCCGGTCCC
CCCTGCGTGCTGCCGATCCCACTGCCAT
Found at i:19321922 original size:26 final size:26
Alignment explanation
Indices: 19321893--19321955 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
19321883 TAGACTAGGA
*
19321893 ATGAACTCCGTATGCTTAGATCGGGG
1 ATGAACTCCGTATGCTTAGACCGGGG
19321919 ATGAACTCCGTATGCTTAGACCGGGG
1 ATGAACTCCGTATGCTTAGACCGGGG
19321945 ATGAACTCCGT
1 ATGAACTCCGT
19321956 GTCAACCCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGACCGGGG
Found at i:19322317 original size:170 final size:171
Alignment explanation
Indices: 19322064--19322519 Score: 490
Period size: 159 Copynumber: 2.7 Consensus size: 171
19322054 GCCTAGACAT
* * * * * *
19322064 GGAATGAACTCCTTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAG
*
19322129 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCTTGCTGCT-GG
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCTTGCTGCTCGA
* *
19322193 TCCTGCTACCGTAACCCTCGATCCGGTCCAATCTTAGATTG
131 TCCTGCTACCGCAACCCTCGATCCGGTCCAATCTTAGACTG
* * * * *
19322234 GGAATGAACTTCGTATGCCTAAGCCAACCCATTAAATGAGCATGCGGGTGCTCAGTCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAG
* * *
19322299 AGGCAGAATGCACAAGCCGGGGA-CTGACCCGAT-----CT-C---CT-CC-TTCATGCTG-TCG
66 AGGCAGAATGCGCAAGCCGGGGATC-GACCCGATCCCCCCTACGTGCTGCCGATCTTGCTGCTCG
* **
19322351 ATCCTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTG
130 ATCCTGCTACCGCAACCCTCGATCCGGTCCAATCTTAGACTG
* * * * * * *
19322393 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCAGGTGCTGAGCCAGTTGGAC
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAG
* * * * * * *
19322458 AGGCATATTACGCAAGCCAGGGATCTACCCGATCCCCCTCTATGTGCTGCCGATCTCGCTGC
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCTGCCGATCTTGCTGC
19322520 CACAACCCTC
Statistics
Matches: 228, Mismatches: 42, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
158 1 0.00
159 122 0.54
160 3 0.01
161 2 0.01
164 1 0.00
165 4 0.02
169 3 0.01
170 86 0.38
171 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (171 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCTTGCTGCTCGA
TCCTGCTACCGCAACCCTCGATCCGGTCCAATCTTAGACTG
Found at i:19322506 original size:159 final size:158
Alignment explanation
Indices: 19322184--19322582 Score: 387
Period size: 159 Copynumber: 2.5 Consensus size: 158
19322174 CTGCCGATCT
* * * ** * *
19322184 TGCTGCTGGTCCTGCTACCGTAACCCTCGATCCGGTCCAATCTTAGATTGGGAATGAACTTCGTA
1 TGCTGCCGATCCTGCTACCGCAACCCTCGAT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * *
19322249 TGCCTAAGCCAACCCATTAAATGAGCATGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCACAA
65 TGCCTAAGCCAACCCATGAAATGAGCATGCAGGTGCTCAGCCAGCCGGACAGGCAGAATACACAA
*
19322314 GCCGGGGACTGACCCGATCTCCTCCTTCA
130 GCCAGGGACTGACCCGATCTCCTCCTTCA
*
19322343 TGCTGTCGATCCTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGCCGATCCTGCTACCGCAACCCTCGATC-GGTCTGATCTTAGACTGGGAATGAACTCCGTA
* ** * ** * * *
19322408 TGCCTAAGTCAACCCATGAAATGAGTGTGCAGGTGCTGAGCCAGTTGGACAGGCATATTACGCAA
65 TGCCTAAGCCAACCCATGAAATGAGCATGCAGGTGCTCAGCCAGCCGGACAGGCAGAATACACAA
19322473 GCCAGGGATCT-ACCCGATC-CC-CC-TCTA
130 GCCAGGGA-CTGACCCGATCTCCTCCTTC-A
* * * * * **
19322500 TGTGCTGCCGAT-CTCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT-GGAATGAACTC
1 --TGCTGCCGATCCT-GCTACCGCAACCCTCGATCGGTCT-GATCTTAGAC-TGGGAATGAACTC
*
19322563 CATATGCCTAAGCCAACCCA
61 CGTATGCCTAAGCCAACCCA
19322583 CTAAACGGGA
Statistics
Matches: 198, Mismatches: 34, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 3 0.02
158 8 0.04
159 182 0.92
160 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (158 bp):
TGCTGCCGATCCTGCTACCGCAACCCTCGATCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCCATGAAATGAGCATGCAGGTGCTCAGCCAGCCGGACAGGCAGAATACACAAG
CCAGGGACTGACCCGATCTCCTCCTTCA
Found at i:19322938 original size:26 final size:26
Alignment explanation
Indices: 19322909--19322961 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19322899 CCGGTCTGAT
19322909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19322935 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19322961 C
1 C
19322962 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19323032 original size:183 final size:183
Alignment explanation
Indices: 19322702--19323033 Score: 434
Period size: 183 Copynumber: 1.8 Consensus size: 183
19322692 GGTCCTACTA
* * *
19322702 CCGTAACTCTCAGTCTGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
1 CCGTAACCCTCAATCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
* * ** * * * * *
19322767 AACTCTGTATGCTTAAGCCTACCCATGAAATGAACGTACGGACGCTCAGTCGGTCGGAGAGGCAG
66 AACTCCGTATGCCTAAGCAAACCCATGAAACGAACGTACGGACGCTCAGCCGGTCGAAAAAGCAG
**
19322832 AATGCGTAAGCCGAGGATCAACTCAATCCCCCTGCGTACTGTCAATCTTGCTG
131 AATGCACAAGCCGAGGATCAACTCAATCCCCCTGCGTACTGTCAATCTTGCTG
* * *
19322885 CCGTAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGAT
1 CCGTAACCCTCAATCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAAT
* * *
19322949 GAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTGCAGG-CGCTCAGCCGGTCGAAAAAGC
65 GAACTCCGTATGCCTAAGCAAACCCATGAAACGAACGTAC-GGACGCTCAGCCGGTCGAAAAAGC
* *
19323013 ATAATGCACAAGTCGAGGATC
129 AGAATGCACAAGCCGAGGATC
19323034 CGTCGATCCC
Statistics
Matches: 125, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
182 1 0.01
183 122 0.98
184 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (183 bp):
CCGTAACCCTCAATCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
AACTCCGTATGCCTAAGCAAACCCATGAAACGAACGTACGGACGCTCAGCCGGTCGAAAAAGCAG
AATGCACAAGCCGAGGATCAACTCAATCCCCCTGCGTACTGTCAATCTTGCTG
Found at i:19323233 original size:170 final size:170
Alignment explanation
Indices: 19323057--19323535 Score: 425
Period size: 170 Copynumber: 2.9 Consensus size: 170
19323047 CTACGTGTTG
* * * *
19323057 CTGATCCTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGT-TGGGGCTTAGAC-ATGGAATG
1 CTGATCCTACTGCCGGTCCTGCTACCACAACCCTCAGTCCGGTCT-GAGCTTAGACTA-GGAATG
* * * * *
19323120 AACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGTAG
64 AACTACGTATACCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCCAGAGAGGCAG
19323185 AATGCGCAAGTCGGGGATTGACCCGGTCCCTCCTTTGTGCTA
129 AATGCGCAAGTCGGGGATTGACCCGGTCCCTCCTTTGTGCTA
* * * *
19323227 CTGATCCTACTGCTGGTCCTGCTACCGCAACCTTCAGTCCGGTCTGATCTTAGACTAGGAATGAA
1 CTGATCCTACTGCCGGTCCTGCTACCACAACCCTCAGTCCGGTCTGAGCTTAGACTAGGAATGAA
* * * * * * *
19323292 CTACGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGCTAGCCAGAGAGGCAGAT
66 CTACGTATACCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCCAGAGAGGCAGAA
* * * * *
19323357 TGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGTGTGC-A
131 TGCGCAAGTCGGGGATTGACCCGGTCCCTCCTTTGTGCTA
* * * * * *
19323396 GTCGATCCTACT-----ACC-G-T-----AACCCTCAGTCCGATCCGATCTTAGACTGGGAATGA
1 CT-GATCCTACTGCCGGTCCTGCTACCACAACCCTCAGTCCGGTCTGAGCTTAGACTAGGAATGA
* * * * * **
19323449 ACT-C-TATATGCCTAAGTCAACCCATGAAACGAGCATACAGGCGCTGATCCAGCTGGAGAGGCA
65 ACTACGTATA--CCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCCAGAGAGGCA
* * *
19323512 TAATGCGCAAGTCAGGGATCGACC
128 GAATGCGCAAGTCGGGGATTGACC
19323536 TGATCCCCCT
Statistics
Matches: 258, Mismatches: 46, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 1 0.00
158 98 0.38
163 1 0.00
164 1 0.00
165 2 0.01
169 2 0.01
170 148 0.57
171 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (170 bp):
CTGATCCTACTGCCGGTCCTGCTACCACAACCCTCAGTCCGGTCTGAGCTTAGACTAGGAATGAA
CTACGTATACCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCCAGAGAGGCAGAA
TGCGCAAGTCGGGGATTGACCCGGTCCCTCCTTTGTGCTA
Found at i:19323541 original size:158 final size:158
Alignment explanation
Indices: 19323243--19323636 Score: 391
Period size: 158 Copynumber: 2.5 Consensus size: 158
19323233 CTACTGCTGG
* * * * *
19323243 TCCTGCTACCGCAACCTTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTACGTATGCCTAAGC
1 TCCTACTACCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTACATATGCCTAAGC
* * * * * * *
19323308 CAACCCATGAAATGAGCGTGCAGGTGCTCAGCTAGCCAGAGAGGCAGATTGCGCAAGTCGGGGAT
66 CAACCCATGAAACGAGCATACAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGTCAGGGAT
*
19323373 CGGCCCGATCCCCCCTGTGTGCAGTCGA
131 CGACCCGATCCCCCCTGTGTGCAGTCGA
* *
19323401 TCCTACTACCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACT-CTATATGCCTAAG
1 TCCTACTACCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTAC-ATATGCCTAAG
* * * ** *
19323465 TCAACCCATGAAACGAGCATACAGGCGCTGATCCAGCTGGAGAGGCATAATGCGCAAGTCAGGGA
65 CCAACCCATGAAACGAGCATACAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGTCAGGGA
* ** * *
19323530 TCGACCTGATCCCCCTCTGCATGCTG-CTGG
130 TCGACCCGATCCCCC-CTGTGTGCAGTC-GA
** * * * ** * *
19323560 TCCCGCTGCCACAACCCTCAGTCCGA-CTAGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAA
1 TCCTACTACCGCAACCCTCAGTCCGATC-CGATCTTAGACTA-GGAATGAACTACATATGCCTAA
*
19323623 GCCAACCCACGAAA
64 GCCAACCCATGAAA
19323637 TGGGCGTGTG
Statistics
Matches: 192, Mismatches: 38, Indels: 11
0.80 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 122 0.64
159 68 0.35
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (158 bp):
TCCTACTACCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTACATATGCCTAAGC
CAACCCATGAAACGAGCATACAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGTCAGGGAT
CGACCCGATCCCCCCTGTGTGCAGTCGA
Found at i:19324120 original size:26 final size:26
Alignment explanation
Indices: 19324091--19324143 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19324081 CCGATCTGAT
19324091 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
19324117 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
19324143 C
1 C
19324144 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:19324501 original size:26 final size:26
Alignment explanation
Indices: 19324472--19324524 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19324462 CCGATCCAAT
19324472 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19324498 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19324524 C
1 C
19324525 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19324850 original size:26 final size:26
Alignment explanation
Indices: 19324816--19324868 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19324806 TTGGTCTGCT
19324816 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
19324842 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
19324868 C
1 C
19324869 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:19325317 original size:367 final size:359
Alignment explanation
Indices: 19323909--19325488 Score: 1219
Period size: 367 Copynumber: 4.4 Consensus size: 359
19323899 AGTCTCACTG
* * * * * * * *
19323909 CCACAACCCTCGATCCGGTTGGGGCTGAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCAC
* * * * * *** * * * *
19323974 GAAATGGGCGTGTGGGTGCTCAACCGCCCAGAGAGGTAGAATGTGCAAG-CTGGGGATCAGCCC-
66 GAAACGAGCGTGCGGGCGCTCAGCTAACCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCCG
* * * **
19324037 AGTCCCCC-CTG--CG-T--GCTGAC-GATCCTACTGTCGCAACCCTCGGTCCGATCTGATCTTA
130 A-TCCCCCTCTGCTCGATCCTCTG-CTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTA
19324095 GACTGGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGA
193 GACTGGGAATGAACTCCGTATGCTTAGACTGGA-ATGAACTCCGTATGCCTAAGTCAACCCACGA
* * ** * ** * *
19324160 AACGAGCATGCGATCGCTCAGCCAGCTGGAGAGGCTGATCTGAGAGGCATAATGCACAAGTTGGG
257 AACAAGCGTGCGGGCACTCAGCCAGCCAGAGAGGC--A---GA-ATGCGTAA-GC-C-----GGG
* * * * *
19324225 GATCAGTCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTGCTG
309 GATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTG-CGATCCTGCTA
* * * * * *
19324277 CCACCA-CCTTCGGTTCGACTGGGGCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCA
1 CCACAACCCTT-GGTCCGGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCA
* * * * * * *
19324341 CAAAACAAGCGTGCGGGTGCTCAGCCAAGCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCG
65 CGAAACGAGCGTGCGGGCGCTCAGCTAACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCC-
* * * * **
19324406 GTCTCCCCCTACATGCTGTCGGTCCTACTGCTGGTCCTGCTGCCGCAACCCTTGGTCCGATCCAA
129 G-ATCCCCCT-C-TGC--TCGATCCT-CTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGA
*
19324471 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCGTAAGTCAACC
188 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
19324536 CACGAAACAAGCGTGCGGGCACTGAGCC-GACCAAAGAGGCATAATGCGTAAGCCGAGGATCAAC
252 CACGAAACAAGCGTGCGGGCACTCAGCCAG-CCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGC
* *
19324600 CTGATCCCCCTCTGCATGCTGTC-AGT--C-C--C-A--CTG---
316 CCGATCCCCCTCTGCGTGCTGTCGA-TCCCGCTGCGATCCTGCTA
* * * * * * * * *
19324633 CCACAACGCTCGATCTGGCTAGGGCTTACATATGTAATGAACACCCTATGCCTAAACCAACCCAC
1 CCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCAC
* * ** * * * *
19324698 GAAATGGGCGTGCGGGCGCTCAGCTGGGCCGAAAAGGCAGAATGCACAAG-CTGGGGATCAGCCC
66 GAAACGAGCGTGCGGGCGCTCAGCT-AACCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCC
* * * * * ** * *
19324762 AATCCCCC-CTG--C-ATACT-T-CTGATCCTACTACCGCAACACTCGGTTTGGTCTGCTCTTAG
129 GATCCCCCTCTGCTCGATCCTCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAG
* * *
19324821 ACTGGGACTGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
194 ACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* ** * * * * * * *
19324886 ACAAGCGTGTGGGTGCCCAGCCAACCGGAGAGGCATAATGTGCAAGCCGGGGATTAGCCCGATCC
258 ACAAGCGTGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCC
*
19324951 CCCTCTGCGTGCTGTCGATCCCACTGTCGATCCTGCTA
323 CCCTCTGCGTGCTGTCGATCCCGCTG-CGATCCTGCTA
* *
19324989 CCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCAC
* * * * * * * *
19325054 GAAATGAGCGTGTGGGCACTTAGCTAATCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCTCGA
66 GAAACGAGCGTGCGGGCGCTCAGCTAACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGA
*
19325119 TCCCCCTTGCGTGCTACCGATCCTGCTGCTGGTCCTGCTATCGCAACCCTCGGTCCGATCTGATC
131 TCCCCC-T-C-TGCT--CGATCCT-CTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGATC
* * * * * **
19325184 TTAGACTGGGAATGAACTCCATATCCCTAGACATGGAATGAACTCTGTATGGCTAAACCAACCCA
190 TTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
19325249 CGAAACGAGCGTGCAGGCACTCAACCAGCCAGAGAGGCAGAATGCGTAAGCCGGGGA-CCGACCC
254 CGAAACAAGCGTGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCAG-CCC
* ** * *
19325313 GATCCTCCCT-TGTGTGCTACCGATCCTGCTGCTGGTCCTGCTA
318 GATCC-CCCTCTGCGTGCTGTCGATCCCGCTGC-GATCCTGCTA
** * * ** *
19325356 CCGTAACCCTTGGTCCGGTTCGATCTTAGAC-TGGGAATGAACAACGTATGCCTAAGCCAACCCA
1 CCACAACCCTTGGTCCGGCTAGGGCTTAGACAT-GGAATGAACACCGTATGCCTAAGCCAACCCA
* * ** * *
19325420 TGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCG
65 CGAAACGAGCGTGCGGGCGCTCAGCTAACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCG
19325485 ATCC
130 ATCC
19325489 TCTCCTGTGT
Statistics
Matches: 953, Mismatches: 203, Indels: 113
0.75 0.16 0.09
Matches are distributed among these distances:
343 1 0.00
344 155 0.16
345 2 0.00
346 1 0.00
347 4 0.00
348 1 0.00
350 1 0.00
351 1 0.00
352 2 0.00
353 4 0.00
355 39 0.04
356 143 0.15
357 29 0.03
358 1 0.00
359 5 0.01
362 1 0.00
363 1 0.00
364 4 0.00
365 1 0.00
366 5 0.01
367 274 0.29
368 130 0.14
369 1 0.00
370 6 0.01
372 1 0.00
373 3 0.00
374 2 0.00
375 6 0.01
376 1 0.00
377 2 0.00
378 1 0.00
379 1 0.00
380 2 0.00
381 118 0.12
382 4 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (359 bp):
CCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCTAACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGA
TCCCCCTCTGCTCGATCCTCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
AGCGTGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCC
TCTGCGTGCTGTCGATCCCGCTGCGATCCTGCTA
Found at i:19325394 original size:197 final size:196
Alignment explanation
Indices: 19325015--19325397 Score: 516
Period size: 196 Copynumber: 1.9 Consensus size: 196
19325005 GGCTAGGGCT
* * * ** * * *
19325015 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCACTTAGCTA
1 TAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAACCA
* * * ** * *
19325080 ATCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCTCGATCCCCCTTGCGTGCTACCGATCCTGC
66 ACCAGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCTTGCGTGCTACCGATCCTGC
*
19325145 TGCTGGTCCTGCTATCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATCC
131 TGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATCC
19325210 C
196 C
* *
19325211 TAGACATGGAATGAACTCTGTATGGCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAACCA
1 TAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAACCA
* * * *
19325276 GCCAGAGAGGCAGAATGCGTAAGCCGGGGACCGACCCGATCCTCCCTTGTGTGCTACCGATCCTG
66 ACCAGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCC-CCCTTGCGTGCTACCGATCCTG
* * *
19325341 CTGCTGGTCCTGCTACCGTAACCCTTGGTCCGGT-TCGATCTTAGACTGGGAATGAAC
130 CTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAAC
19325398 AACGTATGCC
Statistics
Matches: 160, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
196 88 0.55
197 72 0.45
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (196 bp):
TAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAACCA
ACCAGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCTTGCGTGCTACCGATCCTGC
TGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATCC
C
Found at i:19325634 original size:159 final size:159
Alignment explanation
Indices: 19325360--19325882 Score: 462
Period size: 159 Copynumber: 3.3 Consensus size: 159
19325350 CTGCTACCGT
* * * * *
19325360 AACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACAACGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACAACGTATGCCGAAGCCAACCCATGAAA
** * * * * *
19325425 CGAGCGTGCGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGAT-CC
66 CGAGCGTGCAAGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCC
* *
19325489 TCTCCTGTGTGCTGTCGATCTTGCTGCCAC
131 TCT-CTGCGTGCTGTCGATCCTGCTGCCAC
*** * *
19325519 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAATTCCGTTTGCCGAAGTCAACCCATGAAA
1 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACAACGTATGCCGAAGCCAACCCATGAAA
* * * * * *
19325584 CGAGCGTGCAAGCGCTGAGCCGACCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCTGATCCC
66 CGAGCGTGCAAGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCC
*
19325649 TCTCTGCGTGCTGTCGGTCCTGCTGCCAC
131 TCTCTGCGTGCTGTCGATCCTGCTGCCAC
**** ** * *
19325678 AACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 AACCCTCGGTCTGGTC-CAATCTTAGAC-TGGGAATGAACAACGTATGCCGAAGCCAACCCATGA
* * * * * * * * * *
19325741 AACGGGCGTGC-GGCCGCTCAACCGGCCGGAGAGGTAGAATACGCAGGTCGGGGATCGACCCGAT
64 AACGAGCGTGCAAG-CGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGAT
* * * * * *
19325805 CCC-CTCGGCATGCTGCCGATCCTGTTGTCGC
128 CCCTCTCTGCGTGCTGTCGATCCTGCTGCCAC
** * * * **
19325836 AACCCTCAATCCGGCCCGATCTTAGACTGGGAATGAACTTCGTATGC
1 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACAACGTATGC
19325883 TTAGACTGGG
Statistics
Matches: 296, Mismatches: 62, Indels: 13
0.80 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 58 0.20
159 231 0.78
160 6 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (159 bp):
AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACAACGTATGCCGAAGCCAACCCATGAAA
CGAGCGTGCAAGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCC
TCTCTGCGTGCTGTCGATCCTGCTGCCAC
Found at i:19325892 original size:26 final size:26
Alignment explanation
Indices: 19325856--19325908 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19325846 CCGGCCCGAT
* *
19325856 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19325882 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19325908 C
1 C
19325909 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19326647 original size:26 final size:26
Alignment explanation
Indices: 19326603--19326655 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19326593 CCGATTTGAT
*
19326603 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCAGTATG
*
19326629 CTTAGACTAGGG-ATGAACTCAGTATG
1 CTTAGACT-GGGAATCAACTCAGTATG
19326655 C
1 C
19326656 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCAGTATG
Found at i:19327520 original size:26 final size:26
Alignment explanation
Indices: 19327482--19327534 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19327472 CCGGTCCAAT
19327482 CTTAGACTGGGAATGAAATCAGTATG
1 CTTAGACTGGGAATGAAATCAGTATG
* *
19327508 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAAATCAGTATG
19327534 C
1 C
19327535 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCAGTATG
Found at i:19327771 original size:173 final size:173
Alignment explanation
Indices: 19327462--19327773 Score: 516
Period size: 173 Copynumber: 1.8 Consensus size: 173
19327452 CTACTACCGC
*
19327462 AACCCTAGGTCCGGTCCAATCTTAGACTGGGAATGAAATCAGTATGCTTAGACATGGAATGAACT
1 AACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAAATCAGTATGCTTAGACATGGAATGAACT
* * * *
19327527 CTGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATT
66 CTGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAGCCGGCCAAAGAGGCAAAATG
19327592 CGTAAGTCGGGGACCGGCCAGGTCCACCCCTGCGTGCTGTCGT
131 CGTAAGTCGGGGACCGGCCAGGTCCACCCCTGCGTGCTGTCGT
* * * * *
19327635 AACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
1 AACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAAATCAGTATGCTTAGACATGGAATGAACT
* *
19327700 CTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAAAGAGGCAAAATG
66 CTGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAGCCGGCCAAAGAGGCAAAATG
19327765 CGTAAGTCG
131 CGTAAGTCG
19327774 AGGATCGACC
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
173 127 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (173 bp):
AACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAAATCAGTATGCTTAGACATGGAATGAACT
CTGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAGCCGGCCAAAGAGGCAAAATG
CGTAAGTCGGGGACCGGCCAGGTCCACCCCTGCGTGCTGTCGT
Found at i:19328066 original size:159 final size:159
Alignment explanation
Indices: 19327680--19328083 Score: 385
Period size: 158 Copynumber: 2.6 Consensus size: 159
19327670 AACTCCGTAT
* *
19327680 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAC-GAGCATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCA
* * ** *
19327744 GCCGGCCAAAGAGGCAAAATGCGTAAGTCGAGGATCGACCCGATCCCCCTTGCGCGCTGTAGATC
66 GCCGACCAAAGAGGCAAAATGCATAAACCGAGGATCGACCCGATCCCCCTTGCGCGCTGCAGATC
** * * *
19327809 CTGCTGTCGTAACCCTCGATCCAGTCTGA
131 CCACTGCCGTAACCATCGATCCAGGCTGA
* * * * *
19327838 TCTTAAAC-TGGGAGTGAACTCCGTATGCCTAAGTCAACCCAC-AAA-ATGAGCGTGCGGGCGTT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA-GAGCGTGCGGGCGCT
* ** * * *
19327900 GAGCCGACCGGAGAGGCATAATGCATAAACCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCA
64 CAGCCGACCAAAGAGGCAAAATGCATAAACCGAGGATCGACCCGATCCCCCT-TGCGCGCTG-CA
* * *
19327965 G-TCCCACTGCCAG-AACTATCGAT-CTGGCTAGG
127 GATCCCACTGCC-GTAACCATCGATCCAGGCT-GA
* * * *
19327997 GCTTAGACATGGAATGAACACCCTACGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCA
* * *
19328061 ACCGACTAGAA-AGGCAGAATGCA
66 GCCGACCA-AAGAGGCAAAATGCA
19328084 CAAGCCGTGG
Statistics
Matches: 194, Mismatches: 41, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 95 0.49
159 85 0.44
160 9 0.05
161 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.26, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCA
GCCGACCAAAGAGGCAAAATGCATAAACCGAGGATCGACCCGATCCCCCTTGCGCGCTGCAGATC
CCACTGCCGTAACCATCGATCCAGGCTGA
Found at i:19328191 original size:26 final size:26
Alignment explanation
Indices: 19328155--19328207 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19328145 TCGATCTGAT
19328155 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19328181 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19328207 C
1 C
19328208 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19328552 original size:171 final size:169
Alignment explanation
Indices: 19328181--19328721 Score: 576
Period size: 171 Copynumber: 3.2 Consensus size: 169
19328171 ACTCCATATG
* * * * *
19328181 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGAACGGGCGCTCAGC
* * * * *
19328246 CGCCCAGAAAGGCATAATGCGCAAGCC-GGGAT-TAGCCCGGTCCC-CCTCTGCATGCTGCTGAT
66 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCTCCTATG--TGCTG-TGAT
** * * * * * * **
19328308 CCCACTG-TCGATCCTGCTGCCACAACCCTCGATCC-AGCTAGGG
127 CCTGCTGCT-GATCCTGCTACCGCAACCCTTGGTCCGATC-CGAT
19328351 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGAACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGAACGGGCGCTCAG
19328415 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTATGTGCTGTTGATC
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCTCCTATGTGCTG-TGATC
* *
19328480 CTGCTGCTGGTCCTGCTACTGCAACCCTTGGTCCGATCCGAT
128 CTGCTGCTGATCCTGCTACCGCAACCCTTGGTCCGATCCGAT
* * *
19328522 CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACAAGC-ATGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGA-ACGGGCGCTCAG
* **
19328586 CTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCT-CTA--TG-TGTG---CT
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCTATGTGCTGTGATCCT
* *
19328644 G-T-C-GATCCTGCTACCGCAACCCTTAGTTCGATCCGAT
130 GCTGCTGATCCTGCTACCGCAACCCTTGGTCCGATCCGAT
* * *
19328681 CTTAGACTAGGAATCAACTCCGTATGCCTAAGTCAACCCAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAT
19328722 AAAATGAGCG
Statistics
Matches: 325, Mismatches: 37, Indels: 29
0.83 0.09 0.07
Matches are distributed among these distances:
159 67 0.21
160 1 0.00
161 1 0.00
162 3 0.01
165 2 0.01
166 2 0.01
167 2 0.01
169 3 0.01
170 88 0.27
171 144 0.44
172 7 0.02
173 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (169 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGAACGGGCGCTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCTATGTGCTGTGATCCTG
CTGCTGATCCTGCTACCGCAACCCTTGGTCCGATCCGAT
Found at i:19328770 original size:159 final size:159
Alignment explanation
Indices: 19328490--19329024 Score: 407
Period size: 159 Copynumber: 3.4 Consensus size: 159
19328480 CTGCTGCTGG
* * * *
19328490 TCCTGCTACTGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
1 TCCTGCTACCGCAACCCTTAGTCCGATCCGATCTTAGACTAGGAATCAACTACGTATGCCTAAGC
* * *
19328555 CAACCCATGAAACAAGCATGCGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGAT
66 CAACCCATAAAACAAGCATGCAGGTGCTAAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGAT
* *
19328620 CGACCCAATCCCTCTATGTGTGCTGTCGA
131 CGACCCAATCCCCCTATGCGTGCTGTCGA
* * *
19328649 TCCTGCTACCGCAACCCTTAGTTCGATCCGATCTTAGACTAGGAATCAACTCCGTATGCCTAAGT
1 TCCTGCTACCGCAACCCTTAGTCCGATCCGATCTTAGACTAGGAATCAACTACGTATGCCTAAGC
** * * ** * *
19328714 CAACCCATAAAATGAGCGTGCAGGTGCTGAATC-GATC-GAAGAGGCATAATGCGCAAGTCGGGG
66 CAACCCATAAAACAAGCATGCAGGTGCT-AAGCTGGCCAG-AGAGGCAGAATGCGCAAGCCGGGG
* * * *
19328777 ATCGGCCCGATCCCCCTCTGCGTGCTGTCGG
129 ATCGACCCAATCCCCCTATGCGTGCTGTCGA
* * * ** * * * ** * * * *
19328808 TCCCGCTACCACAACCATCGGTTC-AGCTGGGGCTTAGTC-ATGGAATGAACTCCCTATGCCTAA
1 TCCTGCTACCGCAACCCTTAGTCCGATC-CGATCTTAGACTA-GGAATCAACTACGTATGCCTAA
* ** ** * * * * *
19328871 GCCAACCCATGAAACAAGGGTGTGGGTGCTCAA-CCGGCCAGAGAGGTAGAGTGCGTAAGCCGAG
64 GCCAACCCATAAAACAAGCATGCAGGTGCT-AAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGGG
* ** ** **
19328935 GATCGACCCGATCCCCC-CGGTATGCTACCGA
128 GATCGACCCAATCCCCCTATGCGTGCTGTCGA
** ** * * * * *
19328966 TCCTGCTGTCGCAACCCACAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTGCTACCGCAACCCTTAGTCCGATCCGATCTTAGACTAGGAATCAACTACGTATGC
19329025 TTAGACTAGG
Statistics
Matches: 292, Mismatches: 76, Indels: 17
0.76 0.20 0.04
Matches are distributed among these distances:
158 53 0.18
159 236 0.81
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
TCCTGCTACCGCAACCCTTAGTCCGATCCGATCTTAGACTAGGAATCAACTACGTATGCCTAAGC
CAACCCATAAAACAAGCATGCAGGTGCTAAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGAT
CGACCCAATCCCCCTATGCGTGCTGTCGA
Found at i:19329027 original size:26 final size:26
Alignment explanation
Indices: 19328998--19329050 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19328988 CCGGTTCGAT
*
19328998 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATCAACTCCGTATG
*
19329024 CTTAGACTAGGGATCAACTTCGTATG
1 CTTAGACTAGGGATCAACTCCGTATG
19329050 C
1 C
19329051 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATCAACTCCGTATG
Found at i:19329801 original size:26 final size:26
Alignment explanation
Indices: 19329756--19329806 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19329746 CCAGTTCGAT
** *
19329756 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATAAACTCAGTATG
*
19329782 CTTAGACTGGGGATAAACTCAGTAT
1 CTTAGACTGGGAATAAACTCAGTAT
19329807 AACTCAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCAGTATG
Found at i:19330310 original size:26 final size:26
Alignment explanation
Indices: 19330281--19330359 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
19330271 CTGATCCGAT
*
19330281 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
19330307 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
19330333 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
19330359 C
1 C
19330360 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:19330718 original size:26 final size:26
Alignment explanation
Indices: 19330689--19330741 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19330679 CTGGTCCAAT
*
19330689 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19330715 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19330741 C
1 C
19330742 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19331017 original size:159 final size:159
Alignment explanation
Indices: 19330717--19331125 Score: 457
Period size: 159 Copynumber: 2.6 Consensus size: 159
19330707 TCTGTATGCT
* * * *
19330717 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATAAGCGTGTGGGCGCTCAACCG
1 TAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCG
* * * * * *
19330782 ACCGGAGAGGCAGAATTCATAAGTCGAGGATCGATAAGGTCAACCCCTGCGTGCTGTCGATCCTG
66 ATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACAAGATCAACCCCTGCGTGCTGTCGATCCTA
* * ** *
19330847 CTGCCATAACCCTTGGTCCGATCCGATCT
131 CTACCACAACCCTCAGTCCGATCCGATCC
* * * *
19330876 TTGACAAGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCT
1 TAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACC-
* ** *
19330941 G-TCGGAGAGGCAGAATGCGTAAGTC-AGGGATCGGCCCGATC-CCTCCCTGCGTGCTGTCGATC
65 GATCGGAGAGGCAGAATGCGTAAGTCGA-GGATCGACAAGATCAAC-CCCTGCGTGCTGTCGATC
** *
19331003 CTACTACTGCAACCCTCAGTCTGATCCGATCC
128 CTACTACCACAACCCTCAGTCCGATCCGATCC
** * * * *
19331035 TAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCTGAACCG
1 TAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCG
*
19331100 ATCGG-GAGGCATAATGCGGTAAGTCG
66 ATCGGAGAGGCAGAATGC-GTAAGTCG
19331126 NNNNNNNNNN
Statistics
Matches: 207, Mismatches: 37, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
158 14 0.07
159 192 0.93
160 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (159 bp):
TAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCG
ATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACAAGATCAACCCCTGCGTGCTGTCGATCCTA
CTACCACAACCCTCAGTCCGATCCGATCC
Found at i:19332725 original size:26 final size:26
Alignment explanation
Indices: 19332687--19332739 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19332677 TCGGTCCAAT
19332687 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19332713 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19332739 C
1 C
19332740 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19332847 original size:196 final size:196
Alignment explanation
Indices: 19332452--19332826 Score: 527
Period size: 196 Copynumber: 1.9 Consensus size: 196
19332442 CCGCTGCGTG
* *
19332452 CTGCGAGTCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATTTG
1 CTGCGAGTCCTGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATG
* * * * *
19332517 CTTAGACTGGGGATGTACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGC
* * * *
19332582 TGGCTGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCAATCCT
131 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCAATCCT
19332647 A
196 A
* ** * * *
19332648 CTGCTAGTCCTGCTGGCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
1 CTGCGAGTCCTGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATG
* * *
19332713 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGCGCTCAG
66 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAG
* * *
19332777 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCT
130 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCT
19332827 GTGTGCTGTC
Statistics
Matches: 155, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
196 154 0.99
197 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (196 bp):
CTGCGAGTCCTGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCAATCCT
A
Found at i:19333091 original size:13 final size:13
Alignment explanation
Indices: 19333073--19333097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19333063 AAAAGTGTCT
19333073 CCATTTCAAACAA
1 CCATTTCAAACAA
19333086 CCATTTCAAACA
1 CCATTTCAAACA
19333098 TTGTAATGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (13 bp):
CCATTTCAAACAA
Found at i:19338901 original size:26 final size:26
Alignment explanation
Indices: 19338872--19338924 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19338862 CCAGTCCGAT
19338872 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19338898 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19338924 C
1 C
19338925 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19339632 original size:26 final size:26
Alignment explanation
Indices: 19339595--19339646 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19339585 GCTCAAAATT
19339595 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
19339621 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
19339647 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:19339996 original size:159 final size:158
Alignment explanation
Indices: 19339619--19340065 Score: 558
Period size: 159 Copynumber: 2.8 Consensus size: 158
19339609 AACTCCGTAT
19339619 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
19339684 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCTGCATGTTGTCAATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCAATCC
* ** * *
19339749 TGCTACTGCAACCCTCAGTCTGGTCTGA
131 CGCTACCACAACACTCAGTCCGGTCTGA
* * * * * * *
19339777 TCTTAGAC-TAGGAAAGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
** * * * **
19339841 GCCAACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTGTCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCATGCTGTCAAT
* * *
19339906 CCCGCTGCCACAACACTCGGTCCGGT-TAGG
129 CCCGCTACCACAACACTCAGTCCGGTCT-GA
* *
19339936 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * *
19340001 CCGGCTGGAGAGGCAGAATACGCAAGTCGGGGATC-AGCCCGGTCCCCCCTGCATGCTGTCAATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCCTGCATGCTGTCAATC
19340065 C
130 C
19340066 TGCTGCCGCA
Statistics
Matches: 239, Mismatches: 45, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
157 1 0.00
158 113 0.47
159 124 0.52
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCAATCC
CGCTACCACAACACTCAGTCCGGTCTGA
Found at i:19340854 original size:158 final size:159
Alignment explanation
Indices: 19340500--19340882 Score: 394
Period size: 159 Copynumber: 2.4 Consensus size: 159
19340490 ACTCCATATA
* * * *
19340500 CTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * * *
19340565 CGGTCGAAGAGGCAAAATGCGCAAGTCGGGGATCGGTCCGGTCCCCCCCTGCGTGCTGTCGATCC
66 CGGTCGAAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCCTACGTGCTATCGATCC
* * * * * *
19340630 TGCTATCGCAACCTTTGGTCCGGTCTGAT
131 CGCTACCACAACCCTTGGTCCGGACTGAG
* * * * *
19340659 CTTAGAC-TGAGAATGAACTCTGTATGCCTAAGTCAACCGATGAAACGAGCGTGCAGGCACTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * * * * * * *
19340723 CCGGTTGGAGAGGCATAATGTGCAAGCCGAGGATCAGCCCGGT-TCCCTCTATGTGCTATCGGTC
65 CCGGTCGAAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCCTACGTGCTATCGATC
* *
19340787 CCGCTGCCACAACCCTTGGTCC-GACTAGGG
130 CCGCTACCACAACCCTTGGTCCGGACT-GAG
* * * * **
19340817 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGGTGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
19340882 C
66 C
19340883 AACAGGAGAG
Statistics
Matches: 179, Mismatches: 42, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
157 3 0.02
158 87 0.49
159 89 0.50
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
CGGTCGAAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCCTACGTGCTATCGATCC
CGCTACCACAACCCTTGGTCCGGACTGAG
Found at i:19340951 original size:158 final size:155
Alignment explanation
Indices: 19340500--19341000 Score: 413
Period size: 158 Copynumber: 3.2 Consensus size: 155
19340490 ACTCCATATA
* *
19340500 CTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTG-GGGCACTCAGC
* * * **
19340565 CGGTCGAAGAGGCAAAATGCGCAAG-TCGGGGATCGGTCCGGTCCCCCCCTGCGTGCTGTCGATC
65 C-GACGGAGAGGCAAAATGCGCAAGCT-AGGGATCGG-CCGGT-CCCCCCTATGTGCTGTCGATC
** * * *
19340629 CTGCTATCGCAACCTTTGGTCCGGTCTGAT
126 CTGCTGCCGCAACCCTTGGTCCGGACTGAG
* * * * * * *
19340659 CTTAGAC-TGAGAATGAACTCTGTATGCCTAAGTCAACCGATGAAACGAGCGTGCAGGCACTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTG-GGGCACTCAG
** * * * * * * * *
19340723 CCGGTTGGAGAGGCATAATGTGCAAGC-CGAGGATCAGCCCGGTTCCCTCTATGTGCTATCGGTC
64 CC-GACGGAGAGGCAAAATGCGCAAGCTAG-GGATC-GGCCGGTCCCCCCTATGTGCTGTCGATC
* * *
19340787 CCGCTGCCACAACCCTTGGTCC-GACTAGGG
126 CTGCTGCCGCAACCCTTGGTCCGGACT-GAG
* * *
19340817 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGGTGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGG-GGCACTCAGC
* *
19340882 CAACAGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCTGGTCCCCCCTATGTGCTG-CTGATCC
65 CGAC-GGAGAGGCAAAATGCGCAAGCTAGGGATCGGCC-GGTCCCCCCTATGTGCTGTC-GATCC
* * * * *
19340946 TGCTGCTGCAACCCTCGATCCGG-TTCGAT
127 TGCTGCCGCAACCCTTGGTCCGGACT-GAG
*
19340975 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19341001 ATTAGACTAG
Statistics
Matches: 268, Mismatches: 61, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
157 8 0.03
158 171 0.64
159 88 0.33
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGGGGCACTCAGCC
GACGGAGAGGCAAAATGCGCAAGCTAGGGATCGGCCGGTCCCCCCTATGTGCTGTCGATCCTGCT
GCCGCAACCCTTGGTCCGGACTGAG
Found at i:19341701 original size:26 final size:25
Alignment explanation
Indices: 19341672--19341729 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
19341662 GGGTCAAAAT
19341672 CTTAAGC-TGAGAATGAACTTCGTATG
1 CTTAAGCATG-GAATGAAC-TCGTATG
19341698 CTT-AGACATGGAATGAACTCGTATG
1 CTTAAG-CATGGAATGAACTCGTATG
*
19341723 CCTAAGC
1 CTTAAGC
19341730 CAAACCATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 12 0.43
26 14 0.50
27 2 0.07
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (25 bp):
CTTAAGCATGGAATGAACTCGTATG
Found at i:19341887 original size:26 final size:26
Alignment explanation
Indices: 19341858--19341911 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
19341848 GGTCCAATCT
19341858 TAGACTGGGAATGAACT-TCGTATGCC
1 TAGACTGGGAATGAACTCT-GTATGCC
*
19341884 TAGACTGGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
19341910 TA
1 TA
19341912 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCC
Found at i:19342615 original size:26 final size:26
Alignment explanation
Indices: 19342577--19342629 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19342567 GGCTCAAAAT
19342577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19342603 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19342629 C
1 C
19342630 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19342978 original size:159 final size:158
Alignment explanation
Indices: 19342602--19343103 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 158
19342592 AACTCCGTAT
* * * *
19342602 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACTAGCGTG-GGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * * * * *
19342666 CCGGTCGGAGAGGCAGAATGCTAAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTTGATCT
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTTACGTGTTGTCGATCC
* * ** * * * * * * *
19342731 TGCTACCGTAGCCTTCGGT-CTGATATGA
131 AGCTGCCACAACCCTCAGTCCGGCT-GGG
* * * * *
19342759 TCTTACAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
19342823 GCC-GACCGAAGAGGCATAATGCGTAAGCCGAGGATCGGGCCGGTCCCCCTCTACGTGTTGTCGA
65 GCCAG-CCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCT-TACGTGTTGTCGA
19342887 TCCAGCTGCCACAACCCTCAGTCCGGCTGGG
128 TCCAGCTGCCACAACCCTCAGTCCGGCTGGG
* *
19342918 GCTTAGACATGGAATGAACTCCCTATGGC-TAAGCCTACCCACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTAT-GCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
19342982 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCTTGCGTGTTGTCGATC
65 GCCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTTACGTGTTGTCGATC
* * * * * * * *
19343047 CTGCTGTCGCAACCCTCGGTCTGGTTCGA
130 CAGCTGCCACAACCCTCAGTCCGGCTGGG
* *
19343076 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
19343104 TTAGACTTGG
Statistics
Matches: 281, Mismatches: 55, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 50 0.18
158 104 0.37
159 119 0.42
160 7 0.02
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTTACGTGTTGTCGATCC
AGCTGCCACAACCCTCAGTCCGGCTGGG
Found at i:19343118 original size:26 final size:26
Alignment explanation
Indices: 19343077--19343129 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19343067 CTGGTTCGAT
*
19343077 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19343103 CTTAGACTTGGG-ATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19343129 C
1 C
19343130 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19343418 original size:355 final size:348
Alignment explanation
Indices: 19342767--19343801 Score: 1167
Period size: 355 Copynumber: 3.0 Consensus size: 348
19342757 GATCTTACAC
* * * *
19342767 TGGGAATGAACTCCGTATGCATAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTGAGCCGACCGA
1 TGGG-ATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGA
* * * *
19342832 AGAGGCATAATGCGTAAGCCGAGGATCGGGCCGGTCCCCCTCTACGTG-TT-G-T-C-GA-TCCA
65 AGAGGCATAATGCGCAAGCCG-GGATCAGCCCGGTCCCCCTCTACGTGCTTCGATCCTGAGTCCT
* * * * * *
19342891 GCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCTAC
129 GCTGCCACAACCCTCAGTCTGGCTTGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAAC
*
19342956 CCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
194 CCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * * *
19343021 CCGGTCCCTCTTGCGTGTTG-TCGATCCTGCTGTCGCAACCCTCGGTCTGGTTCGATCTTAGACT
259 CCGGTCCCCCCTGCGTGCTGCT-GATCCTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACT
*
19343085 GGGAATGAACTCCGTATGCTTAGACT
323 GGGAATGAACTCCGTATGCTTAGACA
* * * * *
19343111 TGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCACCCGACCGGA
1 TGGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAA
19343176 GAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCACTGCCA
66 GAGGCATAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCTCTACGTGCT-TCGAT--C-CTG--A
19343241 GTCCTGCTGCCACAACCCTCAGTCTGGCTTGGGCTTAGATATGGAATGAACTCCGTATGCCTAAG
124 GTCCTGCTGCCACAACCCTCAGTCTGGCTTGGGCTTAGATATGGAATGAACTCCGTATGCCTAAG
** * *
19343306 CCAACCCACGAATTGAGCGTACGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGA
189 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * * *
19343371 TCGGCCCGATCCCCCCTACGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCT-GATCTGATCTT
254 TCGGCCCGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGGTCTGGTTC-GATCTT
*
19343435 AGACTGGGAATGAACTCTGTATGCTTAGACA
318 AGACTGGGAATGAACTCCGTATGCTTAGACA
* * * * **
19343466 TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGTCGAA
1 TGGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAA
* * * *
19343531 GAGGCAGAATGCGCAAGCCGGGGA-CCGACCGGGTCCCCC-CTGCGTGCTATCGATCCT--G--C
66 GAGGCATAATGCGCAAGCC-GGGATCAG-CCCGGTCCCCCTCTACGTGCT-TCGATCCTGAGTCC
* ** * *
19343590 TGCTG---TAACCCTC-GATCTGG-TCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGT
128 TGCTGCCACAACCCTCAG-TCTGGCT-TGGGCTTAGA-TATGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
19343649 CAACCCACGAAACAAGCGTGCGGGTGCTAAGCCAGCCAGAGAGGCATAATGCACAAGCCGAGGAT
190 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * * * * ***
19343714 CGGCCCGGTCCCCCTCTGCGTGCTGCCGGTCTTGCTGCCACAACCCTCGGTCTGGTTGGGGGTTA
255 CGGCCCGGTCCCCC-CTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTA
*
19343779 GACAT-GGAATGAACTCCCTATGC
319 GAC-TGGGAATGAACTCCGTATGC
19343802 CTAAGCCAAC
Statistics
Matches: 588, Mismatches: 81, Indels: 45
0.82 0.11 0.06
Matches are distributed among these distances:
341 2 0.00
342 110 0.19
343 150 0.26
344 9 0.02
345 7 0.01
346 1 0.00
347 2 0.00
351 3 0.01
352 2 0.00
354 19 0.03
355 282 0.48
356 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (348 bp):
TGGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAA
GAGGCATAATGCGCAAGCCGGGATCAGCCCGGTCCCCCTCTACGTGCTTCGATCCTGAGTCCTGC
TGCCACAACCCTCAGTCTGGCTTGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
GGTCCCCCCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACA
Found at i:19343483 original size:26 final size:26
Alignment explanation
Indices: 19343432--19343484 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19343422 CTGATCTGAT
**
19343432 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19343458 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19343484 C
1 C
19343485 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.