Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 177 of 402
Found at i:19343588 original size:184 final size:184
Alignment explanation
Indices: 19343273--19343642 Score: 544
Period size: 184 Copynumber: 2.0 Consensus size: 184
19343263 TCTGGCTTGG
* * * *
19343273 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATTGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAG
* * * *
19343338 CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGCTGATCC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGCTGATCC
* *
19343403 TGCTGCCGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTAT
131 TGCTGCCGTAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
19343457 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAG
* * * * * *
19343522 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCGGGTCCCCCCTGCGTGCT-ATCGATC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGCT-GATC
* *
19343586 CTGCTGCTGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTGCCGTAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
19343641 GC
1 GC
19343643 CTAAGTCAAC
Statistics
Matches: 165, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
183 1 0.01
184 164 0.99
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGCTGATCC
TGCTGCCGTAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:19343801 original size:159 final size:156
Alignment explanation
Indices: 19343457--19343959 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 156
19343447 AACTCTGTAT
* * *
19343457 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA-CAGCGTGCGGGTGCTCAG
* * * *
19343522 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCGGGTCCCCCCTGCGTGCTATCGATCC
65 CCGGTCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
***
19343587 TGCTGCTGTAACCCTCGATCTGGTCTGA
129 TGCTGCCACAACCCTCGATCTGGTCTGA
* * * * *
19343615 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAAC-AGCGTGCGGGTGCTCA
* * * * * * *
19343679 GCCAGCCAGAGAGGCATAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGT
64 GCCGGTC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTACCGAT
* * *
19343744 CTTGCTGCCACAACCCTCGGTCTGGT-TGGG
127 CCTGCTGCCACAACCCTCGATCTGGTCT-GA
* * * *
19343774 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAG-CGTGCGGGTGCTCAG
* * * * ****
19343839 CCGGTCGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTAAATCC
65 CCGGTC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
* * * *
19343904 TACTGCCGCAACCCTCGGT-TCGATCTGA
129 TGCTGCCACAACCCTCGATCT-GGTCTGA
* *
19343932 TCTTAGAC-TGGGAATCAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
19343960 TTAGACTAGG
Statistics
Matches: 279, Mismatches: 56, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 146 0.52
159 129 0.46
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGCGTGCGGGTGCTCAGC
CGGTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTG
CTGCCACAACCCTCGATCTGGTCTGA
Found at i:19343919 original size:501 final size:507
Alignment explanation
Indices: 19343103--19344064 Score: 1272
Period size: 501 Copynumber: 1.9 Consensus size: 507
19343093 ACTCCGTATG
* *
19343103 CTTAGACTTGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCACC
1 CTTAGACTTGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTAACC
* * *
19343168 CGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCC
66 AGACCAGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCG----
* *
19343233 CACTGCCAGTCCTGCTGCCACAACCCTCAGTCTGGCTTGGGCTTAGATATGGAATGAACTCCGTA
127 C-CTGCCAGTCCTGCTGCCACAACCCTCAGTCTGGCTTGGGCTTAGACATGGAATGAACTCCCTA
** * *
19343298 TGCCTAAGCCAACCCACGAATTGAGCGTACGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAA
191 TGCCTAAGCCAACCCACGAACGGAGCGTACGGGCACTCAGCCAGCCGGAGAGACAGAATGCGCAA
* * * * *
19343363 GTCGGGGATCGGCCCGATCCCCCCTACGTGCTGCTGATCCTGCTGCCGTAACCCTCGG-TCTGAT
256 GCCGGGGATCGGCCCGATCCCCCCTACATGCTGCTAATCCTACTGCCGCAACCCTCGGTTC-GAT
* **
19343427 CTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-ATGGAATGAACTCCATATGCCTAAGC
320 CTGATCTTAGACTGGGAATCAACTCCATATGCTTAGACTA-GGAATGAACT-CATATGCCTAAGC
* * * ** *
19343491 CAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGTC-GAAGAGGCAGAATGCGCAAGCCGGGGA
383 CAACCCACGAAAGGAGCATACGGGCGCTCAGCCGACCAG-AGAGGCAGAATGAGCAAGCCGGGGA
*
19343555 CCGACCGGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGTAACCCTCGATCTGGTCTGAT
447 CCGAACGGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGTAACCCTCGATCTGGTCTGAT
* * **
19343616 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTAAG
1 CTTAGACTTGGG-ATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTAA-
*
19343680 CCAG-CCAGAGAGGCATAATGCACAAGCC-GAGGATCGGCCCGGT-CCCC-CT-C-TGC-GT-G-
64 CCAGACCAGAGAGGCATAATGCACAAGCCAG-GGATCAGCCCGGTCCCCCTCTACGTGCTGTCGC
* * * *
19343736 CTGCCGGTCTTGCTGCCACAACCCTCGGTCTGG-TTGGGGGTTAGACATGGAATGAACTCCCTAT
128 CTGCCAGTCCTGCTGCCACAACCCTCAGTCTGGCTT-GGGCTTAGACATGGAATGAACTCCCTAT
* * * * *
19343800 GCCTAAGCCAACCCATGAAACGGA-CGTGCGGGTACTCAGCCGGTCGGAGAGACAGAATGCGCAA
192 GCCTAAGCCAACCCACG-AACGGAGCGTACGGGCACTCAGCCAGCCGGAGAGACAGAATGCGCAA
19343864 GCCGGGGATCGGCCCGATCCCCCCTACATGCTG-TAAATCCTACTGCCGCAACCCTCGGTTCGAT
256 GCCGGGGATCGGCCCGATCCCCCCTACATGCTGCT-AATCCTACTGCCGCAACCCTCGGTTCGAT
* *
19343928 CTGATCTTAGACTGGGAATCAACTCCATATGCTTAGACTAGGGATGAACTCGTATGCCTAAGCCA
320 CTGATCTTAGACTGGGAATCAACTCCATATGCTTAGACTAGGAATGAACTCATATGCCTAAGCCA
* * *
19343993 ACCCACGAAAGGAGCATACGGGCGCTCAGCCGACCAGAGAGGCAGGATGAGCAAGTCGGGGATCG
385 ACCCACGAAAGGAGCATACGGGCGCTCAGCCGACCAGAGAGGCAGAATGAGCAAGCCGGGGACCG
19344058 AACGGGT
450 AACGGGT
19344065 AGTAGGTGGG
Statistics
Matches: 395, Mismatches: 45, Indels: 31
0.84 0.10 0.07
Matches are distributed among these distances:
500 77 0.19
501 204 0.52
502 7 0.02
507 1 0.00
508 2 0.01
509 3 0.01
510 1 0.00
511 2 0.01
512 9 0.02
513 86 0.22
514 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (507 bp):
CTTAGACTTGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTAACC
AGACCAGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGCCTG
CCAGTCCTGCTGCCACAACCCTCAGTCTGGCTTGGGCTTAGACATGGAATGAACTCCCTATGCCT
AAGCCAACCCACGAACGGAGCGTACGGGCACTCAGCCAGCCGGAGAGACAGAATGCGCAAGCCGG
GGATCGGCCCGATCCCCCCTACATGCTGCTAATCCTACTGCCGCAACCCTCGGTTCGATCTGATC
TTAGACTGGGAATCAACTCCATATGCTTAGACTAGGAATGAACTCATATGCCTAAGCCAACCCAC
GAAAGGAGCATACGGGCGCTCAGCCGACCAGAGAGGCAGAATGAGCAAGCCGGGGACCGAACGGG
TCCCCCCTGCGTGCTATCGATCCTGCTGCTGTAACCCTCGATCTGGTCTGAT
Found at i:19344693 original size:26 final size:26
Alignment explanation
Indices: 19344655--19344733 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
19344645 GGCTCAAAAT
19344655 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
19344681 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
19344707 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
19344733 C
1 C
19344734 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:19345180 original size:26 final size:26
Alignment explanation
Indices: 19345151--19345201 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19345141 CGATCCGATC
19345151 TTAGACT-GGGAATGAACTCCGTATGG
1 TTAGACTAGGG-ATGAACTCCGTATGG
19345177 TTAGACTAGGGATGAACTCCGTATG
1 TTAGACTAGGGATGAACTCCGTATG
19345202 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGGATGAACTCCGTATGG
Found at i:19345947 original size:159 final size:157
Alignment explanation
Indices: 19345558--19346002 Score: 369
Period size: 159 Copynumber: 2.8 Consensus size: 157
19345548 TCCATATGCT
* * *
19345558 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACTG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC-C
* * * * * * **
19345623 GACGGAGAGGTAGAATGCTTAAGTCGGGGATAGACCCAGTCCCTCCTGCGTGCTGTCGATCCTAC
65 GACGGAGAGGCAAAATGCTCAAATCGGGGATAGACCCAGTCCCCCCTACGTGCTACCGATCCTAC
* * * *
19345688 TACCACAACTCTCAGTTCGGTCCGATCT
130 TACCACAACCCTCAGTCCGCTCCGATCG
* * * * * *
19345716 TAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACT-GAGC
1 TAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
* * * * *
19345779 TAGCTGGAGAGGCATAATGCTCAAATCGGGGATCGA-CCTGATCCCCCTCTACGTGCTACCGGT-
65 GA-C-GGAGAGGCAAAATGCTCAAATCGGGGATAGACCCAG-TCCCCC-CTACGTGCTACCGATC
* * * ** *
19345842 CTCGCTGCCACAACCCTCCGTCCAGCTGGGGT-G
126 CT-ACTACCACAACCCTCAGTCC-GCTCCGATCG
* * *
19345875 TAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
* ** ** * * ** *
19345940 ATCGGAGAGGCAAAATGCGCAAGCCGAAGATAGGCCCGGTCCCCCCTGTGTGCTGCCGATCCT
66 A-CGGAGAGGCAAAATGCTCAAATCGGGGATAGACCCAGTCCCCCCTACGTGCTACCGATCCT
19346003 GCTATCGTAA
Statistics
Matches: 221, Mismatches: 55, Indels: 21
0.74 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 6 0.03
158 95 0.43
159 107 0.48
160 12 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
ACGGAGAGGCAAAATGCTCAAATCGGGGATAGACCCAGTCCCCCCTACGTGCTACCGATCCTACT
ACCACAACCCTCAGTCCGCTCCGATCG
Found at i:19346060 original size:26 final size:26
Alignment explanation
Indices: 19346031--19346083 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19346021 CTAGTCTGAT
*
19346031 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
19346057 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
19346083 C
1 C
19346084 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:19346680 original size:26 final size:26
Alignment explanation
Indices: 19346651--19346702 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19346641 ATGCCGTCGG
19346651 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
19346677 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
19346703 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:19347206 original size:26 final size:26
Alignment explanation
Indices: 19347177--19347228 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19347167 CCGGTCCGAT
* *
19347177 CTTAGATTGGTAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19347203 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19347229 TCTAAGTCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19347937 original size:26 final size:26
Alignment explanation
Indices: 19347899--19347951 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19347889 GGCTCAAAAT
19347899 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19347925 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19347951 C
1 C
19347952 CTACGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19348441 original size:26 final size:26
Alignment explanation
Indices: 19348401--19348452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19348391 TAGTCTGATG
19348401 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
19348427 TTAGACTAGGG-ATGAACTTCGTATGC
1 TTAGACT-GGGAATGAACTCCGTATGC
19348453 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:19348819 original size:26 final size:26
Alignment explanation
Indices: 19348781--19348833 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19348771 CTAGTCCGAT
19348781 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19348807 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19348833 C
1 C
19348834 CTATACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19349311 original size:26 final size:26
Alignment explanation
Indices: 19349282--19349332 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19349272 TCGATCCGAT
19349282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19349308 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19349333 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19349702 original size:26 final size:26
Alignment explanation
Indices: 19349661--19349713 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19349651 CCGGTCCGAT
19349661 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19349687 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
19349713 C
1 C
19349714 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19349761 original size:367 final size:343
Alignment explanation
Indices: 19348965--19349787 Score: 875
Period size: 367 Copynumber: 2.3 Consensus size: 343
19348955 CCGGTCAGAT
* * * *
19348965 CTTAGACTGGGAATTAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTAAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
19349030 C-AGCC-GAAGATGCATAATGCGCAAGCTGGGGATCGACTCGTTCCCCCTTTGCGTGCTGTCGAT
65 CGAGCCAG-AGAGGCATAATGCGCAAGCTGGGGATCGACTCGATCCCCCTCTACGTGCTGTCGAT
*
19349093 CCCGTTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCC
129 CCCGTTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCC
*
19349158 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGTCGGGGATC
194 AACCCACGAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGTCGGGGATC
* * *
19349223 GACCCGATCCCCCTTGCGTGCTGTCGATCCTGCTATCGTAACCCTCGATTCGATCCGATCTTAGA
259 GACCCGATCCCCCTTGCGTGCTCTCGATCCTGCTACCGTAACCCTCGATCCGATCCGATCTTAGA
*
19349288 CTGGGAATGAACTCCGTATG
324 CTGGGAATGAACTCCATATG
* * * *
19349308 CTTAGACTGGGGATGAACTCCGTAT-CCTAAGTCAACCCATGAAACGAGTGTACGGGCACTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA--
* *
19349372 CGGCCGGAGAGGTCGGCCAGAGAGGCATAATGTGCAAGCTGGGGATCAGCCT-GATCCCCCTCTA
63 --GCC---GA-----GCCAGAGAGGCATAATGCGCAAGCTGGGGATC-GACTCGATCCCCCTCTA
* *
19349436 CGTGCTGTCGATCCCGCTGTCGATCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGTCATA
117 CGTGCTGTCGAT--C-C---CG-T--TG---CCACAACCCTCAGTCCGACTGGGGCTTAGACATA
** * * *
19349501 GAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCTG-GCTGGAG
170 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGATC-GGAG
* * * *
19349565 AGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCTGAT
234 AGGCAAAATGCGCAAGTCGGGGATCGACCCGAT-CCCCCT---TGC-GT-G---CT-CT-C-GAT
* *
19349630 CCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
287 CCTGCTACCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
* *
19349687 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*** *
19349752 CGA-CCAGAGAGGCAGGTTGCGCAAGCCGGGGATCGA
65 CGAGCCAGAGAGGCATAATGCGCAAGCTGGGGATCGA
19349788 ACGGGTGGTA
Statistics
Matches: 392, Mismatches: 46, Indels: 61
0.79 0.09 0.12
Matches are distributed among these distances:
342 31 0.08
343 19 0.05
344 3 0.01
346 3 0.01
350 1 0.00
355 49 0.12
356 4 0.01
357 1 0.00
358 1 0.00
361 2 0.01
362 1 0.00
364 2 0.01
366 2 0.01
367 142 0.36
368 6 0.02
371 3 0.01
372 2 0.01
373 3 0.01
376 5 0.01
377 1 0.00
378 1 0.00
379 79 0.20
380 31 0.08
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GAGCCAGAGAGGCATAATGCGCAAGCTGGGGATCGACTCGATCCCCCTCTACGTGCTGTCGATCC
CGTTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGTCGGGGATCGA
CCCGATCCCCCTTGCGTGCTCTCGATCCTGCTACCGTAACCCTCGATCCGATCCGATCTTAGACT
GGGAATGAACTCCATATG
Found at i:19350923 original size:158 final size:156
Alignment explanation
Indices: 19350420--19350923 Score: 431
Period size: 159 Copynumber: 3.2 Consensus size: 156
19350410 GCTCCGTATG
* * *
19350420 CTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCAACGAAACGAACTTCGGAGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-ACGAAACGAGCTGCGG-GCGCTCAA
* * * * * * *
19350485 GTCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTAGT-TCCCCTGC-ATGTTGTTGAT
64 -CCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCC-GGTCCCCCCTGCGA-GCTGCTGAT
* * * *
19350548 CCTACTGCCACAACCCTCAGTTTGGTCCGAT
126 CCTGCTGCCACAACCCTCGGTTCGATCCGAT
* * * * * * * *
19350579 CTTAGACCTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCTTGCAGGCGATGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC-TGCGGGCGCTCAA
* * * * * * * * *
19350644 CCGACCGAAAAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGCTGGTC
64 CCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGG-CCGGTCCCCC-CTGCGAGCTGCTGATC
* * * * * **
19350709 CCGCTGCCACAACCCTTGG-TCCAGCTTGGG
127 CTGCTGCCACAACCCTCGGTTCGATC-CGAT
* * * *
19350739 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCCCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC-TGCGGGCGCTCAAC
* * *
19350804 CGGCCGGAGAGGTAGAATGCACAAGTCGGGGATCGACTCGGTCCCCCCTGCGAGCTGCCGATCCT
65 CGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGC-CGGTCCCCCCTGCGAGCTGCTGATCCT
** *
19350869 GCTGCTGCAACCCTCGGTTCGATCCAAT
129 GCTGCCACAACCCTCGGTTCGATCCGAT
19350897 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
19350924 TTAGACATGG
Statistics
Matches: 261, Mismatches: 74, Indels: 21
0.73 0.21 0.06
Matches are distributed among these distances:
157 1 0.00
158 82 0.31
159 114 0.44
160 64 0.25
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTGCGGGCGCTCAACC
GGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCGGTCCCCCCTGCGAGCTGCTGATCCTGC
TGCCACAACCCTCGGTTCGATCCGAT
Found at i:19350935 original size:26 final size:26
Alignment explanation
Indices: 19350897--19350949 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19350887 TCGATCCAAT
19350897 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19350923 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19350949 C
1 C
19350950 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19351324 original size:487 final size:483
Alignment explanation
Indices: 19350391--19352018 Score: 1635
Period size: 487 Copynumber: 3.3 Consensus size: 483
19350381 TGTGACTCAA
* * *
19350391 AATCTTAGGCTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
19350456 CCCAACGAAACGAAC-TTCGGAGCGCTCAAGTCGGTCGGAGAGGCAGAATGCACAAGCCGGGGA-
66 CCC-ACAAAACGAACGTGCGG-GCGCTC-AGCCGGCCAGAGAGGCAGAATGCACAAGCCGGGGAC
* ** * * * * * * *
19350519 TCGGCCTAGT-TCCCCTGCATG-TT-GTTGATCCTACTGCCACAACCCTCAGTTTGGTCCGATCT
128 T-GACCCGGTCCCCCCTGCGTGCTTCGTTCATGCTA-T--CGCAACCCTCGGTCTGGTCCGATCT
*
19350581 TAGACCTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCTTGCAGGCGATGAGCC
189 TAGA-CTGGGAATGAACTCCGTATGCATAAGTCAACCCAC-GAA--A-C--G-A-GCG-T-----
* * * * * * *
19350646 GACCGAAAAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTACGTGCTG-CTGGTCC
239 G-CCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCCAGTTCCCCTCTTCGTGCTGTC-GGTCC
*
19350710 CGCTGCCACAACCCTTGGTCC-AGCTTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
302 CGCTGCCACAACCCTTGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
19350774 ACCCACGAAATGGGCATGCGGGCCCTCAACCGGCCGGAGAGGTAGAATGCACAAGTCGGGGATCG
366 ACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCACAAGT-GGGGATCG
* *
19350839 ACTCGGTCCCCCCTGCGAGCTGCCGATCCTGCTGCTGCAACCCTCGGTTCGATCC
430 ACCCGGT-CCCCCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTTCGATCC
19350894 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * ** *
19350959 CCCACAAAACGAGCGTGTGGGTGCTCAGTCAGCCTGAGAGGCAGAATGCGTAAGTCGGGGACTGA
66 CCCACAAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACTGA
* * *
19351024 CCCGGTCCCCCCTTGCGTGCTATCGTTTATGCTATCGCAACCCTCGGTCTAGTTCGATCTTAGAC
131 CCCGGTCCCCCC-TGCGTGCT-TCGTTCATGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGAC
* *
19351089 TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCCGAAGAGGCGTAATGCGT
194 TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCCGAAGAGGCATAATGCGT
*
19351154 AAGCCGGGGATCGGCCCAATTCCCCTCTTCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCCG
259 AAGCCGGGGATCGGCCCAGTTCCCCTCTTCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCCG
*
19351219 ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCGTGCGGGC
324 ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGC
* *
19351284 GCTCAGCCGGCCGGAGAGGTAGAATGCACAAGATGGGGATCGACCCGGTACCCCATGCGTGCTGT
389 GCTCAGCCGGCCGGAGAGGTAGAATGCACAAG-TGGGGATCGACCCGGT-CCCCCTGCGTGCTGC
* *
19351349 CGATCCTGCTGCTGGTACTGCTACCGTAACTCTCGGTCCGATCC
452 CGAT-C--CTGCT-G--CTG----C--AACCCTCGGTTCGATCC
*
19351393 CATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * * * *
19351458 CCCACGAAACAAACGTGCGGTTGGTCAGCCGGTCAGAAAGGCAGAATGCACAAGCTGGGGACGGA
66 CCCACAAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACTGA
* * * * *
19351523 CCCGATCCCCCCTGCGTGCTTTCGATCCTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGATT
131 CCCGGTCCCCCCTGCGTGC-TTCGTTCATGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACT
* * *
19351588 GGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCCAGTTGGA
195 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGC-----C---G--A-----A
* * * * * * *
19351653 GAGGCATAATGCGTAAGCTGGGGATCGG-ACTGGTCCCCATCCAT-GTGTTGTCGATCCCGCTGC
245 GAGGCATAATGCGTAAGCCGGGGATCGGCCCAGTTCCCC-T-CTTCGTGCTGTCGGTCCCGCTGC
* *
19351716 CACAACCCTCGGTCCCG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
308 CACAACCCTTGGT-CCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * ** * *
19351780 GAAACGGGCGTGCAGGCGCTCAGCTGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGG
372 GAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCACAAG-TGGGGATCGACCCGG
* * * * * *
19351845 TCCCCCTACGTGCTGCTGATCTTGCTG-TCACAACCCTC-ATTCCAGTCC
436 TCCCCCTGCGTGCTGCCGATCCTGCTGCT-GCAACCCTCGGTTCGA-TCC
* * * * * *
19351893 AATCTTAAACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTTCGTATACCTAAGTCA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * *
19351957 ACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGCATGCGCAAGCCGGGGA
65 ACCCACAAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCACAAGCCGGGGA
19352019 TCGAGTGGGT
Statistics
Matches: 952, Mismatches: 129, Indels: 91
0.81 0.11 0.08
Matches are distributed among these distances:
487 192 0.20
488 5 0.01
490 5 0.01
491 1 0.00
493 4 0.00
494 3 0.00
495 1 0.00
496 1 0.00
497 1 0.00
498 87 0.09
499 145 0.15
500 115 0.12
501 36 0.04
502 54 0.06
503 98 0.10
504 1 0.00
505 3 0.00
506 9 0.01
508 2 0.00
509 4 0.00
511 1 0.00
512 21 0.02
513 158 0.17
514 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (483 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACAAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCACAAGCCGGGGACTGA
CCCGGTCCCCCCTGCGTGCTTCGTTCATGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCCGAAGAGGCATAATGCGTAA
GCCGGGGATCGGCCCAGTTCCCCTCTTCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCCGAC
TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGC
TCAGCCGGCCGGAGAGGTAGAATGCACAAGTGGGGATCGACCCGGTCCCCCTGCGTGCTGCCGAT
CCTGCTGCTGCAACCCTCGGTTCGATCC
Found at i:19351425 original size:26 final size:26
Alignment explanation
Indices: 19351396--19351448 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19351386 CCGATCCCAT
19351396 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19351422 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19351448 C
1 C
19351449 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19351690 original size:158 final size:157
Alignment explanation
Indices: 19351422--19351922 Score: 462
Period size: 159 Copynumber: 3.2 Consensus size: 157
19351412 ACTCCGTATG
* * * *
19351422 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAACGTGCGGTTGGTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* ** *
19351486 CCGGTCAGAAAGGCAGAATGCACAAGCTGGGGA-CGGACCCGATCCCCCCTGCGTGCTTTCGATC
65 CCGGTCAGAGAGGCAGAATGCGTAAGCTGGGGATCGGA-CCGGTCCCCCCT-CGTGCTTTCGATC
* * *
19351550 CTGCTATCGCAACCCTCGGTCCGGTCCGAT
128 CTGCTGTCACAACCCTCGGTCCAGTCCGAT
* * * * *
19351580 CTTAGATTGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * *
19351645 CAGTTGGAGAGGCATAATGCGTAAGCTGGGGATCGGACTGGTCCCCATCCAT-GTG-TTGTCGAT
66 CGGTCAGAGAGGCAGAATGCGTAAGCTGGGGATCGGACCGGTCCCC--CC-TCGTGCTT-TCGAT
* * * * **
19351708 CCCGCTGCCACAACCCTCGGTCCCG-CTGGGG
127 CCTGCTGTCACAACCCTCGGTCCAGTC-CGAT
* * * * *
19351739 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
19351803 CTGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGT-CCCCCTACGTGC-TGCTGATC
65 CCGGTCAGAGAGGCAGAATGCGTAAGCTGGGGATCGGACCGGTCCCCCCT-CGTGCTTTC-GATC
* ** *
19351866 TTGCTGTCACAACCCTCATTCCAGTCCAAT
128 CTGCTGTCACAACCCTCGGTCCAGTCCGAT
*
19351896 CTTA-AACTGGGAATGAACTCCATATGC
1 CTTAGAA-TGGGAATGAACTCCGTATGC
19351923 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 56, Indels: 31
0.76 0.16 0.09
Matches are distributed among these distances:
155 2 0.01
156 5 0.02
157 48 0.18
158 93 0.34
159 120 0.44
160 3 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGTCAGAGAGGCAGAATGCGTAAGCTGGGGATCGGACCGGTCCCCCCTCGTGCTTTCGATCCTG
CTGTCACAACCCTCGGTCCAGTCCGAT
Found at i:19352486 original size:220 final size:220
Alignment explanation
Indices: 19352105--19352550 Score: 696
Period size: 220 Copynumber: 2.0 Consensus size: 220
19352095 TCATACAATG
* *
19352105 GTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACAAACCGTTTTCTATTTTTCCTTATTTTC
1 GTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACAAACCGTTTTCTATTTTTCCTGATTTTC
* * *
19352170 AAAATTTTTACGGTTCGGGATTTTTAAAAATTTTTTTAGAAAGTGTTTTGTATCCAAATTTGGTA
66 AAAATTTTTACGGTTCAGGATTTTTAAAAATTTTTTTAGAAAGAGTTTTGTACCCAAATTTGGTA
* * * *
19352235 GAGGTGATTCTTGTATTTTTGTTGGCATGCAC-AAAAAATTTAGTTAAAAACTCGAAGTGGAGAA
131 GAGGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAGAA
* *
19352299 GATTTTGTGAGCGTTTAAAAAAAGT
196 GATTTTGTGACCGCTTAAAAAAAGT
* *
19352324 GTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACCCGTTTTCTATTTTTCGTGATTTTT
1 GTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACAAACCGTTTTCTATTTTTCCTGA-TTTT
* * * * *
19352389 GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGT
65 CAAAATTTTTACGGTTCAGGATTTTTAAAAATTTTTTTAGAAAGAGTTTTGTACCCAAATTTGGT
*
19352454 AGAGGTGGTCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAGA
130 AGAGGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAGA
*
19352519 AGATTTTGTGACCGCTTGAAAAAAGT
195 AGATTTTGTGACCGCTTAAAAAAAGT
19352545 GTCCCC
1 GTCCCC
19352551 ATGTCAGACA
Statistics
Matches: 205, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
219 56 0.27
220 91 0.44
221 58 0.28
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (220 bp):
GTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACAAACCGTTTTCTATTTTTCCTGATTTTC
AAAATTTTTACGGTTCAGGATTTTTAAAAATTTTTTTAGAAAGAGTTTTGTACCCAAATTTGGTA
GAGGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAGAA
GATTTTGTGACCGCTTAAAAAAAGT
Found at i:19358893 original size:26 final size:26
Alignment explanation
Indices: 19358864--19358916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19358854 CCGGTCCGAT
19358864 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19358890 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19358916 C
1 C
19358917 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19359760 original size:26 final size:26
Alignment explanation
Indices: 19359724--19359776 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19359714 CTGGTCCAAT
*
19359724 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19359750 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19359776 C
1 C
19359777 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19360844 original size:158 final size:158
Alignment explanation
Indices: 19360469--19360914 Score: 420
Period size: 159 Copynumber: 2.8 Consensus size: 158
19360459 AACTCCATAT
* * * *
19360469 GCTTAGACATGGAATGAACTCTGTACGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAC
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGTGTGCGGGCGCTCAA
** * * * *
19360534 TCGGTTAGAGAGGCAGAATGCTCAAGCCGGGGATCGGCCCGGTCACCCTCTGCGTGCTGTCGATC
65 TCGGTCGGAGAGGCAGAATGCTCAAGCCGGGGATCGGCCCGGTCACCCCCTGAGTGCTGCCAATC
* * **
19360599 CCGCTACCACAACCCTCGGTCTGGCTGGG
130 CCGCTACCACAACCCTCGATCAGGCTGAA
* * * * * *
19360628 GCTTAGATATGTAATGAACTCCCTATGCCTAGGCCAACCCAT-GAAACGGGTGTACGGGCGCTCA
1 GCTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCC-TCGAAACGAGTGTGCGGGCGCTCA
* *
19360692 GTCGGTCGGAGAGGTAGAATGCGT-AAGCCGGGGATCGGCCCGGTTC-CCCCCT-AGTGCTGCCA
64 ATCGGTCGGAGAGGCAGAATGC-TCAAGCCGGGGATCGGCCCGG-TCACCCCCTGAGTGCTGCCA
* * * * *
19360754 ATCCTGCTGCCGCAATCCTCGATCCAGTCT-AA
127 ATCCCGCTACCACAACCCTCGAT-CAGGCTGAA
* * * *
19360786 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGTGTGCGGGCGCTCAA
* * * ** * * * *
19360851 TCGATCGGAGAGGCAG-ATGCACAAGTCGACGATTGGCCCAGTC-CCCCCTGCGTGCTGCCTATC
65 TCGGTCGGAGAGGCAGAATGCTCAAGCCGGGGATCGGCCCGGTCACCCCCTGAGTGCTGCCAATC
19360914 C
130 C
19360915 TGCGGCTGAT
Statistics
Matches: 231, Mismatches: 47, Indels: 20
0.78 0.16 0.07
Matches are distributed among these distances:
156 8 0.03
157 32 0.14
158 89 0.39
159 99 0.43
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGTGTGCGGGCGCTCAAT
CGGTCGGAGAGGCAGAATGCTCAAGCCGGGGATCGGCCCGGTCACCCCCTGAGTGCTGCCAATCC
CGCTACCACAACCCTCGATCAGGCTGAA
Found at i:19360985 original size:26 final size:26
Alignment explanation
Indices: 19360956--19361008 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19360946 CCGATCCGAT
19360956 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19360982 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19361008 C
1 C
19361009 CTAAGCCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19361277 original size:159 final size:159
Alignment explanation
Indices: 19360982--19361280 Score: 379
Period size: 159 Copynumber: 1.9 Consensus size: 159
19360972 ACTCCGTATG
* **
19360982 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** * * **
19361047 CGGTCGGAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGGTCCCCACCTGCGTGCTGTGGATCC
66 CGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCGGTCCCCACCTGCGTGATGCAGATCC
**
19361112 TGCTGCCACAACTCTTAGTTTGATCTGAT
131 CCCTGCCACAACTCTTAGTTTGATCTGAT
* * *
19361141 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * ** *
19361205 CCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGGTCCCC-CTCTGCGTGATGCCAG-
65 CCGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCGGTCCCCAC-CTGCGTGATG-CAGA
19361268 TCCCCCTGCCACA
128 TCCCCCTGCCACA
19361281 GCGCTCGATC
Statistics
Matches: 118, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
158 2 0.02
159 115 0.97
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCGGTCCCCACCTGCGTGATGCAGATCC
CCCTGCCACAACTCTTAGTTTGATCTGAT
Found at i:19362558 original size:26 final size:26
Alignment explanation
Indices: 19362522--19362574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19362512 CTGGTCTAAT
*
19362522 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19362548 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19362574 C
1 C
19362575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19363634 original size:26 final size:26
Alignment explanation
Indices: 19363583--19363635 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19363573 CCGATTTGAT
*
19363583 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19363609 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19363635 C
1 C
19363636 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19364528 original size:26 final size:26
Alignment explanation
Indices: 19364492--19364543 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19364482 TCTAGTCTGA
19364492 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
* *
19364518 TCTTAGACTGGGGATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
19364544 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:19364727 original size:26 final size:26
Alignment explanation
Indices: 19364676--19364728 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19364666 CCGGTCTGAT
*
19364676 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19364702 CTTAGAC-ATGGAATGAACTCCTTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
19364728 C
1 C
19364729 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19365203 original size:158 final size:158
Alignment explanation
Indices: 19364702--19365203 Score: 530
Period size: 158 Copynumber: 3.2 Consensus size: 158
19364692 ACTTCGTATG
*
19364702 CTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 CTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * *
19364766 CCGACCGGAGAGGCAGAATGCGTAAGCCTGGGATCGAC-CTAATCCCCCTTTAGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTC-GATCCCCCCTTCGTGCTGTCGATC
*
19364830 CTGCTACCACAACCCTCGATCCGGTCCGAT
129 CTGCTGCCACAACCCTCGATCCGGTCCGAT
* * * * * * *
19364860 CTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAACATTCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * * * * * *
19364924 CC-AGCCGGAGAAGCATAATGTGCAAGTCGGGGATCGGCTCGATTCCCCTCTACATGCTG-CCAG
65 CCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGA-TCCCCCCTTCGTGCTGTCGA-
* ** **
19364987 TCCCGCTGCCACAACCCTCTG-TCCGGTTGGGG
127 TCCTGCTGCCACAACCCTC-GATCCGGTCCGAT
** * **
19365019 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * * *
19365084 CGACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTTCGTGCTGTCGATCTT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTTCGTGCTGTCGATCCT
* * *
19365149 GCTGCCGCAACCTTCGATCCAGTCCGAT
131 GCTGCCACAACCCTCGATCCGGTCCGAT
*
19365177 CTTAGACAGGGAATGAACTCTGTATGC
1 CTTAGACATGGAATGAACTCTGTATGC
19365204 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 64, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 141 0.52
159 120 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTTCGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCCGGTCCGAT
Found at i:19365218 original size:26 final size:26
Alignment explanation
Indices: 19365177--19365229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19365167 CCAGTCCGAT
*
19365177 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
19365203 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
19365229 C
1 C
19365230 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:19366093 original size:25 final size:26
Alignment explanation
Indices: 19366045--19366093 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
19366035 GGTCTGATCA
* *
19366045 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
19366071 TAGAGTGGG-ATGAACTCCATATG
1 TAGACTGGGAATGAACTCCATATG
19366094 TCTAGTCAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 12 0.60
26 8 0.40
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:19366970 original size:26 final size:26
Alignment explanation
Indices: 19366941--19366993 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19366931 CCAATCTGAT
* *
19366941 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
* *
19366967 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
19366993 C
1 C
19366994 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:19368725 original size:163 final size:157
Alignment explanation
Indices: 19368350--19368931 Score: 453
Period size: 159 Copynumber: 3.6 Consensus size: 157
19368340 GCCGGTCCTA
* * * * *
19368350 CTGCTACAACCCTC-GGTCGGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAAC
1 CTGCCACAACCCTCAGTTC-GACTAGGGCTTAGATATGGAATGAACTCCCTATGCCTAA-GCAAC
* * * * ** * * *
19368414 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGA-AGGTAGAATACATAAGCCG-GGA-CGAC
64 CCATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGA-GCAGAATGCGCAAGCTGCGGATTGGC
* * * *
19368476 CCGGTCCCCCT-TGCATGGCTGTCGATCCTG
128 CCGATCCTCCTCTACAT-GCTGTCGATCCCG
* * * * * * ** * *
19368506 TTGCTGTA-AACCCTCGGTCTGGTCCA-ATCTTAGACTA-GGAATGAACTTCGTATGCCTAAGTC
1 CTGC--CACAACCCTCAGT-TCGACTAGGGCTTAGA-TATGGAATGAACTCCCTATGCCTAAG-C
* * * * ** *
19368568 AAGCCATGAAACGAGCGTGCGGGGCACTGAGCCGGCCGGAGAGCATAATGCATTTAAGCCTCGGG
61 AACCCATGAAACGAGCGTAC-GGGCACTCAGCCGGCCGGAGAGCAGAATGC--GCAAG-CT-GCG
19368633 GATTGGCCCGATCC-CCTTCTACATGCTGTCGATCCCG
121 GATTGGCCCGATCCTCC-TCTACATGCTGTCGATCCCG
* *
19368670 CTGCCGCAACCCTCAGTTTGACTAGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTTCGACTAGGGCTTAGATATGGAATGAACTCCCTATGCCTAAG-CAACC
* * * * * *
19368735 CATGAAACGGGCATACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGCGTATTGGCC
65 CATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGA-GCAGAATGCGCAAGCTGCGGATTGGCC
* *
19368800 CGATCCTCCTCTGCATGCTGTCGGTCCCG
129 CGATCCTCCTCTACATGCTGTCGATCCCG
* * ** * * *
19368829 TTGCCACAACCCTCGGTTCGGTTTGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCTAACC
1 CTGCCACAACCCTCAGTTCGACTAGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGC-AACC
* *
19368894 CATGAAACGAACGTACGGGCACTCAGCAGGCCGGAGAG
65 CATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGAG
19368932 GCAAATGTAC
Statistics
Matches: 338, Mismatches: 66, Indels: 42
0.76 0.15 0.09
Matches are distributed among these distances:
156 4 0.01
157 54 0.16
158 31 0.09
159 119 0.35
160 8 0.02
161 4 0.01
162 24 0.07
163 66 0.20
164 24 0.07
165 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTGCCACAACCCTCAGTTCGACTAGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCAACCC
ATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGAGCAGAATGCGCAAGCTGCGGATTGGCCCG
ATCCTCCTCTACATGCTGTCGATCCCG
Found at i:19368857 original size:159 final size:156
Alignment explanation
Indices: 19368355--19369270 Score: 628
Period size: 158 Copynumber: 5.7 Consensus size: 156
19368345 TCCTACTGCT
* * *
19368355 ACAACCCTCGGTCGGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCATGA
1 ACAACCCTCGGTCGG-CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * * * * * *
19368420 AACGAGCGTGCGGGCGCTCAGCCGGCCGGA-AGGTAGAATACATAAGCCGGGA-CGACCCGGTCC
65 AACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATGCATAAGCTGGGATTGGCCCGATCC
* *
19368483 CC-CTTGCATGGCTGTCGATCCTGTTGCTGT
130 CCTC-TGCAT-GCTGTCGATCCCGTTGC--C
* ** * * * *
19368513 A-AACCCTCGGTCTGGTCCA-ATCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAAGCCAT
1 ACAACCCTCGGTC-GG-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * *
19368575 GAAACGAGCGTGCGGGGCACTGAGCCGGCCGGAGA-GCATAATGCATTTAAGCCTCGGGGATTGG
63 GAAACGAGCGTAC-GGGCACTCAGCCGGCCGGAGAGGCAGAATGCA--TAAG-CT--GGGATTGG
* *
19368639 CCCGATCCCCTTCTACATGCTGTCGATCCCGCTGCC
122 CCCGATCCCC-TCTGCATGCTGTCGATCCCGTTGCC
* * * * *
19368675 GCAACCCTCAGTTTGACTAGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 ACAACCCTC-GGTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * * * ** *
19368740 AACGGGCATACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGCGTATTGGCCCGATC
65 AACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATGCATAAGCTG-GGATTGGCCCGATC
*
19368805 CTCCTCTGCATGCTGTCGGTCCCGTTGCC
129 C-CCTCTGCATGCTGTCGATCCCGTTGCC
* * * *
19368834 ACAACCCTCGGTTCGGTTTGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCTAACCCATGA
1 ACAACCCTCGG-TCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * * * * *
19368899 AACGAACGTACGGGCACTCAGCAGGCCGGAGAGGCA-AATGTACAAGCCGAGGATCGACCCGATC
65 AACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATGCATAAGCTG-GGATTGGCCCGATC
* ** * *
19368963 CCCCCTGTGTGCTGTTGATCCTGCTGCTGGTCTTAC
129 CCCTCTGCATGCTGTCGATCC--C-G-TTG-C---C
* * * * ** **
19368999 TACCGTAACCCTCGATCCGATCCGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACC
1 -A-C--AACCCTCGGTCGGCT-AGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACC
* * * * ** * * * **
19369063 CACGAAACGAGCGTACGAGCGCTCAGCCAGCTAGAGAGGTAGAATGCATAGGCCGGGATCAGCCC
60 CATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATGCATAAGCTGGGATTGGCCC
* * *
19369128 GGTCCCTCTCTGCATACTG-CCAGTCCCGTTGCC
125 GATCCC-CTCTGCATGCTGTCGA-TCCCGTTGCC
* * * *
19369161 ACAACCCTCTGTCCGGCTATGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCACGA
1 ACAACCCTCGGT-CGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * ** * ** *
19369226 AACGGGCATGTGGGCACTCAACCGATCGGAGAGGCTGAATGCATA
65 AACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATGCATA
19369271 TGCCAGGGAT
Statistics
Matches: 586, Mismatches: 133, Indels: 78
0.74 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 75 0.13
158 129 0.22
159 125 0.21
160 10 0.02
161 7 0.01
162 21 0.04
163 64 0.11
164 28 0.05
165 6 0.01
166 4 0.01
167 2 0.00
168 6 0.01
169 87 0.15
170 21 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
ACAACCCTCGGTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
ACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATGCATAAGCTGGGATTGGCCCGATCCC
CTCTGCATGCTGTCGATCCCGTTGCC
Found at i:19369897 original size:159 final size:157
Alignment explanation
Indices: 19369524--19369984 Score: 396
Period size: 159 Copynumber: 2.9 Consensus size: 157
19369514 CGGTCCTACT
* * * *
19369524 GCCACAACCCTCGGTCTGACTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTTGATCAGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * *
19369589 CGAAAAGAGCGTGCGGGCACTCAGTCGGTCGGAGAGGCAGAATACACAAGTCAGGGATCGGCCTG
66 CGAAAAGAGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATACACAAGCCAGGGATCGGCC-G
* * * *
19369654 GTTCCCCCTGCGTGACGTCGATCCTGCT
130 GATCCCCCTGCGTGACGCCGATCCCGCG
* * * ** * * *
19369682 GTCACAACCCTTGGTTCAGTCT-GATCTTAGAC-TGGGAATGAACTTCGAATGCCTAAGTCAACC
1 GCCACAACCCTT-GATCAGACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * * *
19369745 CATGAAATGAGCGTGCGGGCGCTGAGCCAGTCGGAGAGGCATAATGCATAAGCCGGGGATCAGTC
64 CACGAAAAGAGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATACACAAGCCAGGGATC-GGC
19369810 C-GATCCCTCTCTGCAAGCTG-C-CCGA-CCCGCG
128 CGGATCCC-C-CTGC--G-TGACGCCGATCCCGCG
* * *
19369841 GCCACAACCCTTGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCCACAACCCTTGATCAGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * * * * *
19369906 CGAAACGGGCATGTGGGCACTCAGTCAGTCGAAGAGGTAGAATGCGCAAACCAGGGATCGACCTG
66 CGAAAAGAGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATACACAAGCCAGGGATCGGCC-G
19369971 G-TCCCCCATGCGTG
130 GATCCCCC-TGCGTG
19369985 CTGTCGATCT
Statistics
Matches: 237, Mismatches: 53, Indels: 29
0.74 0.17 0.09
Matches are distributed among these distances:
155 2 0.01
156 1 0.00
157 7 0.03
158 107 0.45
159 111 0.47
160 5 0.02
161 2 0.01
162 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
GCCACAACCCTTGATCAGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAAAGAGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATACACAAGCCAGGGATCGGCCGG
ATCCCCCTGCGTGACGCCGATCCCGCG
Found at i:19370060 original size:26 final size:26
Alignment explanation
Indices: 19370024--19370076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19370014 CTAGTTAGAT
19370024 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
19370050 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19370076 C
1 C
19370077 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19370248 original size:26 final size:26
Alignment explanation
Indices: 19370219--19370271 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19370209 CCGATCCAAT
19370219 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19370245 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19370271 C
1 C
19370272 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19370591 original size:159 final size:157
Alignment explanation
Indices: 19370244--19370660 Score: 448
Period size: 159 Copynumber: 2.6 Consensus size: 157
19370234 AACTCCGTAT
* * * *
19370244 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGGGTGCGGACACTCAG
* * * * * * *
19370309 TCGATCGAAGATGTAGAATGCGTAAGCCAGGGATCAGCCCGATCCCCCTGCGTGCTATCGATACT
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTACGTGCTATCGATACT
* ** * * *
19370374 GCTGTCGTAACGCTCGGTCTGATCTGA
131 GCTGCCACAACCCTCGGTCTCAGCTGA
* * * * * *
19370401 TCTTAGAC-TGGGAATGTACTCCGC-ATGCCTAAGTCAACCCACGAAATGAGGGTTCGGTCACTG
1 GCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAATGAGGGTGCGGACACTC
* * * * *
19370464 AGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCTCTCTACGTGCTGTCGG
64 AGTCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCC-C-CTACGTGCTATCGA
19370529 T-CTCGCTGCCACAACCCTCGGTC-CAGCTGA
127 TACT-GCTGCCACAACCCTCGGTCTCAGCTGA
*
19370559 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GGAGTGCGGACGCTC
1 -GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGG-GTGCGGACACTC
* * *
19370623 AGTCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCG
64 AGTCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
19370661 ACCCAGTCCC
Statistics
Matches: 211, Mismatches: 40, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 90 0.43
158 11 0.05
159 108 0.51
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGGGTGCGGACACTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTACGTGCTATCGATACT
GCTGCCACAACCCTCGGTCTCAGCTGA
Found at i:19370765 original size:25 final size:26
Alignment explanation
Indices: 19370719--19370770 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19370709 CTGGTTCGAT
19370719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19370745 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19370770 C
1 C
19370771 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19371141 original size:26 final size:26
Alignment explanation
Indices: 19371112--19371164 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19371102 CCGATCCAGT
19371112 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
19371138 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
19371164 C
1 C
19371165 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:19372372 original size:26 final size:26
Alignment explanation
Indices: 19372334--19372386 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19372324 GGCTTAAACT
*
19372334 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATCAACTTC-GTATG
19372360 CTTAGACAT-GGAATCAACTTCGTATG
1 CTTAGAC-TGGGAATCAACTTCGTATG
19372386 C
1 C
19372387 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTTCGTATG
Found at i:19372944 original size:159 final size:159
Alignment explanation
Indices: 19372359--19372956 Score: 513
Period size: 159 Copynumber: 3.8 Consensus size: 159
19372349 AACTCTGTAT
* * * **
19372359 GCTTAGACATGGAATCAACTTCGTATGCCTAAGCCAACCCACGAATCGAGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * * *
19372424 TCGGGCGGAGAGGCAGAATGCGCAAGTCGGGGAATTGTA--CGATCCCCCTCTGCGTGTTGTCAG
66 -CCGGCGGAGAGGCAGAATGCACAAGCCGGGG-ATTGGACTCGATCCCCTTCTGCGTGCTGTCAG
** *
19372487 TCCTGCTGCCACAACCCTTTGTCCGGTTGGG
129 TCCTGCTGCCACAACCCTCGGTCCGGCTGGG
* ** * * *
19372518 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATAAAACGGGTGTGC-AGACGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGA-GCTCA
* * * * ** * * * * *
19372582 GCCTGCCAGAAAGGTAGAATGTGCAAGCCGGGGATCGGCCTGGTTCCCC--CTGCATGCTGTC-G
65 GCC-GGCGGAGAGGCAGAATGCACAAGCCGGGGATTGGACTCGATCCCCTTCTGCGTGCTGTCAG
*** * *
19372644 ATCCTGCT-TTGCAACCCTCGGTCTGGTCT-GA
129 -TCCTGCTGCCACAACCCTCGGTCCGG-CTGGG
** * *
19372675 TTTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTA-CTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTC
* * * * * *
19372738 AACCGGCTGAAGAGGTATAATGCACAAGCCGGGGA-TCGACTCGATCCCCTTCTGCGTGCTATCA
64 AGCCGGC-GGAGAGGCAGAATGCACAAGCCGGGGATTGGACTCGATCCCCTTCTGCGTGCTGTCA
** *
19372802 GTCCCACTGCCACAACCCTCGGTCCAGCTGGG
128 GTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
* * *
19372834 GCTTAGACATGGAATGAACT-CGCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAGCTTA
1 GCTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
* *
19372898 GCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCT-GAT-CCCTCCTGCGTGCTG
65 GCCGG-CGGAGAGGCAGAATGCACAAGCCGGGGATTGGACTCGATCCCCTTCTGCGTGCTG
19372957 CCGATCCTGC
Statistics
Matches: 339, Mismatches: 80, Indels: 41
0.74 0.17 0.09
Matches are distributed among these distances:
156 12 0.04
157 85 0.25
158 57 0.17
159 173 0.51
160 12 0.04
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
CCGGCGGAGAGGCAGAATGCACAAGCCGGGGATTGGACTCGATCCCCTTCTGCGTGCTGTCAGTC
CTGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:19372964 original size:316 final size:316
Alignment explanation
Indices: 19372360--19373016 Score: 792
Period size: 316 Copynumber: 2.1 Consensus size: 316
19372350 ACTCTGTATG
* *
19372360 CTTAGAC-ATGGAATCAACTTCGTATGCCTAAGCCAACCCACGAATCGAGCGTGCGGGCTCTCAG
1 CTTAGACTA-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAG
* * * * * * * *
19372424 TCGGGCGGAGAGGCAGAATGCGCAAGTCGGGGAATTGTACGATCCCCCTCTGCGTGTTGTCAGTC
65 ACCGGCGAAGAGGCAGAATGCACAAGCCGGGGAATCGTACGATCCCCCTCTGCGTGCTATCAGTC
** ** * *
19372489 CTGCTGCCACAACCCTTTGTCCGGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCA
130 CCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCA
* * * **
19372554 ACCCATAAAACGGGTGTGCAGACGCTCAGCCTGCCAGAAAGGTAGAATGTGCAAGCCGGGGATCG
195 ACCCATAAAACGGGCGTGCAGACGCTCAGCCGGCCAGAAAGGCAGAATGCACAAGCCGGGGATCG
* * * *
19372619 GCCTGGTTCCCCCTGCATGCTGTCGATCCTGCTTTGCAACCCTCGGT-CTGGTCTGAT
260 GCCTGGATCCCCCTGCATGCTGCCGATCCTGCTTTGCAACCCTCGGTCCAGTTC-GAT
* * * *
19372676 TTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-TACTGA-
1 CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCT-CTCAG
* * *
19372739 ACCGGCTGAAGAGGTATAATGCACAAGCCGGGG-ATCG-ACTCGATCCCCTTCTGCGTGCTATCA
65 ACCGGC-GAAGAGGCAGAATGCACAAGCCGGGGAATCGTA--CGATCCCCCTCTGCGTGCTATCA
19372802 GTCCCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCGC-TATGCCTAA
127 GTCCCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTC-CTTATGCCTAA
* * * * * *
19372866 GCCAACCCATGAAACGGGCGTGCGGGA-GCTTAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGG
191 GCCAACCCATAAAACGGGCGTGC-AGACGCTCAGCCGGCCAGAAAGGCAGAATGCACAAGCCGGG
* * *
19372930 GATTGGCCT-GATCCCTCCTGCGTGCTGCCGATCCTGCTTTGCAACGCTCGGTCCAGTTCGAT
255 GATCGGCCTGGATCCC-CCTGCATGCTGCCGATCCTGCTTTGCAACCCTCGGTCCAGTTCGAT
*
19372992 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTAGGAATGAACTTCGTAT
19373017 ACTTAGATTG
Statistics
Matches: 288, Mismatches: 44, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
314 1 0.00
315 13 0.05
316 266 0.92
317 8 0.03
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (316 bp):
CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAGA
CCGGCGAAGAGGCAGAATGCACAAGCCGGGGAATCGTACGATCCCCCTCTGCGTGCTATCAGTCC
CACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAA
CCCATAAAACGGGCGTGCAGACGCTCAGCCGGCCAGAAAGGCAGAATGCACAAGCCGGGGATCGG
CCTGGATCCCCCTGCATGCTGCCGATCCTGCTTTGCAACCCTCGGTCCAGTTCGAT
Found at i:19373021 original size:26 final size:26
Alignment explanation
Indices: 19372992--19373042 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19372982 CCAGTTCGAT
*
19372992 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
19373018 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19373043 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:19373752 original size:26 final size:26
Alignment explanation
Indices: 19373714--19373766 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19373704 GGCTCAAACT
* *
19373714 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
19373740 CTTAGAC-GTGGAATGAAATCCATATG
1 CTTAGACTG-GGAATGAAATCCATATG
19373766 C
1 C
19373767 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:19374445 original size:26 final size:26
Alignment explanation
Indices: 19374407--19374459 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19374397 CCGATCTGAT
*
19374407 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19374433 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
19374459 C
1 C
19374460 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19374946 original size:197 final size:197
Alignment explanation
Indices: 19374602--19374992 Score: 477
Period size: 197 Copynumber: 2.0 Consensus size: 197
19374592 TTAGACTGGG
* * *
19374602 AATGAACTCCGCATGCCTTAGTCAACCCACGAAACGAGCATTCGGGCACAGAGCCGATCGGAGAG
1 AATGAACTCCACATGCCTAAGTCAACCCACGAAACAAGCATTCGGGCACAGAGCCGATCGGAGAG
* * * *
19374667 GCATAATGCACAAACCGGGGATTGACCCGGTCCTCCTCTGCGTACTGTTGGTCTCGCTGCCACAA
66 GCATAATGCACAAACCGGGGATCGACCCGGTCCTCCTCTGCGTACTGTCGATCCCGCTGCCACAA
* * * *
19374732 CCCTCGGTCCAGCTGGGGCTTAGACATGAAATAAACTCCCTAATGCCTAAGCCAAGCCATGAAAC
131 CCCTCAGTCCAGCTGGGGCTTAGACATGAAATAAACTCCCT-ATGCATAAGCCAACCCACGAAAC
19374797 GGC
195 GGC
* * * **
19374800 AATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGTGCTA-AG-CGA-CTGGAG
1 AATGAACTCCACATGCCTAAGTCAACCCACGAAACAAGCATTCGGGCAC-AGAGCCGATC-GGAG
* ** * *
19374862 AGGCATAATGCGCAAGTC-GGGATCGACCGGGTCC-CCTTTCTGCGTGCTGTCGATCCCGCTGCC
64 AGGCATAATGCACAAACCGGGGATCGACCCGGTCCTCC--TCTGCGTACTGTCGATCCCGCTGCC
** * *
19374925 ACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGA
127 ACAACCCTCAGTCCAGCTGGGGCTTAGACATGAAATAAACTCCCTATGCATAAGCCAACCCACGA
19374990 AAC
192 AAC
19374993 AGGCGTGCGG
Statistics
Matches: 164, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
195 2 0.01
196 35 0.21
197 83 0.51
198 43 0.26
199 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (197 bp):
AATGAACTCCACATGCCTAAGTCAACCCACGAAACAAGCATTCGGGCACAGAGCCGATCGGAGAG
GCATAATGCACAAACCGGGGATCGACCCGGTCCTCCTCTGCGTACTGTCGATCCCGCTGCCACAA
CCCTCAGTCCAGCTGGGGCTTAGACATGAAATAAACTCCCTATGCATAAGCCAACCCACGAAACG
GC
Found at i:19375088 original size:158 final size:157
Alignment explanation
Indices: 19374800--19375095 Score: 344
Period size: 158 Copynumber: 1.9 Consensus size: 157
19374790 ATGAAACGGC
* * * * **
19374800 AATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGTGCTAAGCGACTGGAGAGG
1 AATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGTGCGGGTGCTAAGCGACCAGAGAGG
* * * * * * *
19374865 CATAATGCGCAAGTCGGGATCGACCGGGTCCCCTTTCTGCGTGCTGTCGATCCCGCTGCCACAAC
66 CAGAATGCGCAAGCCGGGATCGACCCGATCCCC-TCCTGCGTGCTGCCGATCCCACTGCCACAAC
19374930 CCTCAGTCTGGCTGGGGCTTAGACATGG
130 CCTCAGTCTGGCTGGGGCTTAGACATGG
* * * *
19374958 AATGAACTCCCTATGCATAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGCCGGCCAGAGAG
1 AATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGTGCGGGTGCTAAG-CGACCAGAGAG
* * * **
19375023 GTAGAATGCGTAAGCCGGGCATC-AGCCCGATCCCC-CCTGCGTGCTGCCGATCCTACTGCTGCA
65 GCAGAATGCGCAAGCCGGG-ATCGA-CCCGATCCCCTCCTGCGTGCTGCCGATCCCACTGCCACA
19375086 ACCCTCAGTC
128 ACCCTCAGTC
19375096 CGATCCGATC
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 78 0.69
159 24 0.21
160 11 0.10
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
AATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGTGCGGGTGCTAAGCGACCAGAGAGG
CAGAATGCGCAAGCCGGGATCGACCCGATCCCCTCCTGCGTGCTGCCGATCCCACTGCCACAACC
CTCAGTCTGGCTGGGGCTTAGACATGG
Found at i:19375134 original size:25 final size:24
Alignment explanation
Indices: 19375098--19375155 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
19375088 CCTCAGTCCG
19375098 ATCCG-AT-CTTAGACTAGGAATGA
1 ATCCGTATGCTTAGA-TAGGAATGA
* *
19375121 ATCCGTATGCTTAGATTGGGATGA
1 ATCCGTATGCTTAGATAGGAATGA
19375145 ACTCCGTATGC
1 A-TCCGTATGC
19375156 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 5 0.17
24 10 0.33
25 15 0.50
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (24 bp):
ATCCGTATGCTTAGATAGGAATGA
Found at i:19375750 original size:158 final size:157
Alignment explanation
Indices: 19375588--19375978 Score: 373
Period size: 158 Copynumber: 2.5 Consensus size: 157
19375578 ACCAATCCAA
* *
19375588 TCCCCCCTGCGTACTGTCGATCCTGCTACCGCAACCCTCGGTTCC-GTCCGATCTTAGACTGGGA
1 TCCCCCCTGCGT-CTGTCGATCCTGCTACCGTAACCCTC-GATCCAGTCCGATCTTAGACTGGGA
* * * * *
19375652 ATGAACTCCATATGCCTAAGTCAACCCATGAAA-TGAGCGTACGGGCACTGAGCCAATCGGAGAG
64 ATGAACTCCATATGCCTAAGCCAACCCATGAAACAG-GCGTACAGGCACTGAACCAACCGGAGAG
*
19375716 GCATAATGCGCAAGC-AAGAGATC-AGCCTGG
128 GCAAAATGCGCAA-CTAAGAGATCGA-CCTGG
* * * ** * * * * * *
19375746 TCCCCATCTGCGTGTGTCGGTCCCACT-GCGATAACCCTAGCTCCAG-CTGGGTCATAGACAT-G
1 TCCCC-CCTGCGTCTGTCGATCCTGCTACCG-TAACCCTCGATCCAGTC-CGATCTTAGAC-TGG
* * * *
19375808 GAATAAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACAGGCACTTAACCGACCGGAGA
62 GAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTACAGGCACTGAACCAACCGGAGA
* ** * *
19375873 GGCAAAATTCGCAACTCGGGGATCGATCTGG
127 GGCAAAATGCGCAACTAAGAGATCGACCTGG
* *
19375904 TCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCGGTTCGATCTTAGACTGGGAA
1 TCCCCCCTGCGT-CTGTCGATCCTGCTACCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAA
19375969 TGAACTCCAT
65 TGAACTCCAT
19375979 TTGCTTAGAC
Statistics
Matches: 179, Mismatches: 42, Indels: 24
0.73 0.17 0.10
Matches are distributed among these distances:
157 15 0.08
158 153 0.85
159 11 0.06
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (157 bp):
TCCCCCCTGCGTCTGTCGATCCTGCTACCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAAT
GAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTACAGGCACTGAACCAACCGGAGAGGCA
AAATGCGCAACTAAGAGATCGACCTGG
Found at i:19376868 original size:26 final size:26
Alignment explanation
Indices: 19376832--19376884 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19376822 TCGGTTCGAT
19376832 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19376858 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19376884 C
1 C
19376885 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19377878 original size:26 final size:26
Alignment explanation
Indices: 19377842--19377894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19377832 CTGGTCTGAT
*
19377842 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19377868 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19377894 C
1 C
19377895 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19378012 original size:184 final size:183
Alignment explanation
Indices: 19377647--19378013 Score: 405
Period size: 184 Copynumber: 2.0 Consensus size: 183
19377637 TAACTCTCAG
*
19377647 TCTGGTCTGATCCTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCT
1 TCTGGTCTGATCCTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCC
** * * * * * * **
19377712 TAAGCCTACCCATGAAATGAACGTACGGGCGCTCAGTCGGCCCGAGAGGCAAAATGCGTAAGCCA
66 TAAGCAAACCCATGAAACGAACGTACAGGCGCTCAGCCGGCCAGAAAAGCAAAATGCACAAGCCA
* * * **
19377777 AGGATCGACTCGGTCCCCACTGCGTGCTGTCAATCTTGCTGTCGTAACCCTCGA
131 AGGATCGA-TCGGTCCCCACTACGTGCTGTCAATCCTGCTGCCACAACCCTCGA
* * * *
19377831 TCTGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGC
1 TCTGGTCTGATCCTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGC
* * * * * *
19377895 CTAAGTAAACCCATGAAACGAGCGTGCAGGCGCTTAGCCGGCCAGAAAAGCATAATGCACAAGTC
65 CTAAGCAAACCCATGAAACGAACGTACAGGCGCTCAGCCGGCCAGAAAAGCAAAATGCACAAGCC
* * * **
19377960 GAGGATCTG-TCGGTCCCCCTCTACGTGTTGTTGATCCTGCTGCCACAACCCTCG
130 AAGGATC-GATCGGT-CCCCACTACGTGCTGTCAATCCTGCTGCCACAACCCTCG
19378014 GTCCGGTTGG
Statistics
Matches: 149, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
183 6 0.04
184 142 0.95
185 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (183 bp):
TCTGGTCTGATCCTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCC
TAAGCAAACCCATGAAACGAACGTACAGGCGCTCAGCCGGCCAGAAAAGCAAAATGCACAAGCCA
AGGATCGATCGGTCCCCACTACGTGCTGTCAATCCTGCTGCCACAACCCTCGA
Found at i:19379040 original size:26 final size:26
Alignment explanation
Indices: 19379011--19379063 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19379001 CCGATATGAT
19379011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19379037 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19379063 C
1 C
19379064 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19379430 original size:26 final size:26
Alignment explanation
Indices: 19379392--19379444 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19379382 CTGATCCAAT
19379392 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19379418 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19379444 C
1 C
19379445 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19379593 original size:355 final size:357
Alignment explanation
Indices: 19378830--19380184 Score: 907
Period size: 355 Copynumber: 3.8 Consensus size: 357
19378820 GGTCTCGCTG
* * * * * * *
19378830 CCACAACCCTCGATCCGGTTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCAT
1 CCACAACCCTCGATCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * ** *
19378895 GAAATGGGCGTGTGGGTGCTCAGCCA-CCGGAGAGGCAGAATGTGCAAGTTGGGGATC-AGCCCA
66 GAAACGAGCGTGTGGGTGCTCA-CCAGGCAGAGAGGTAGAATGCACAAGTCGGGGATCGA-CCC-
* * * *
19378958 GTC-CCCCCTGCGTGCTGACGAT-C-C-----TACTG-T--CGCAACCCTCGGTCCGATATGATC
128 GTCTCCCCCTGCATGCT-ACG-TCCTCTGTGGTCCTGCTACCGCAACCCTCGGTCTGATCTGATC
* *
19379012 TTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCC
191 TTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCGTAAGTCAACCC
* * ** * * * * **
19379076 ACGAAACGAGCGTGTGATCGCTCAGCTAGCTGGAGAGGCTGATCTGAGAGGCATAATGCACAAG-
255 ATGAAACAAGC--GTG--CGGGCACCCAGC---CGA--CCGA----AGAGGCATAATGTGCAAGC
** * * * * * *
19379140 TTAGGGATCAGCCCGGTCCCCCTCTACGTGC-TTTCGATCCCGCTATCGGTCTTGCTG
307 CGA-GGATCAGCCCGATCCCCCTCT-CGT-CATGTC-ATCCCAC-GTC-G-CCTGCTA
* * * * * *
19379197 CCACCACCTTCGGT-TCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGATCT-GGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
** * *
19379261 TAAAACAAGCGTGCGGGTGCTCAGCCAGGCAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCG
65 CGAAACGAGCGTGTGGGTGCTCA-CCAGGCAGAGAGGTAGAATGCACAAGTCGGGGATCGACCC-
* * **
19379326 GTCTCCCCCTGCATGCTATCGGTCCTACTGCTGGTCCTGCTGCCGCAACCCTTGGTCTGATCCAA
128 GTCTCCCCCTGCATGCTA-C-GTCCT-CTG-TGGTCCTGCTACCGCAACCCTCGGTCTGATCTGA
19379391 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCGTAAGTCAACC
189 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCGTAAGTCAACC
** * *
19379456 CATGAAACAAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATACTGTGTAAGCCGAGGATCAGCC
254 CATGAAACAAGCGTGCGGGCACCCAGCCGACCGAAGAGGCATAATGTGCAAGCCGAGGATCAGCC
* * *
19379521 TGATCCCCCTCT-G-CATG-C-TGCCA-GTC-CC-GCTG
319 CGATCCCCCTCTCGTCATGTCATCCCACGTCGCCTGCTA
* * * * * *
19379553 CCAC-ACGCTCGATCTGGCTATGGCTTAGACATGTAATGAACACCCTATGCCTAATCCAACCCAC
1 CCACAACCCTCGATCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * ** *
19379617 GAAAGGGGCATGTGGGTGCTCAACTGGCCGAAAAGGTAGAATGCGTAAGCCGGGGATC-AGCCCG
66 GAAACGAGCGTGTGGGTGCTCACCAGGCAG-AGAGGTAGAATGCACAAGTCGGGGATCGA-CCCG
* * * * * * *
19379681 -AT-CCCC--CATGCATAC-T--T-T-TGATCCTAG-TACCGCAACACTCGATTTGGTCTGCTCT
129 TCTCCCCCTGCATGC-TACGTCCTCTGTGGTCCT-GCTACCGCAACCCTCGGTCTGATCTGATCT
* * *
19379736 TAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCA
192 TAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCGTAAGTCAACCCA
* ** * * * *
19379800 TGAAACAAGCGTACGGGTGCCCAGCTGACCGGAGAGGCATAATGTGCAAGCCGGGGATTAGCCCG
256 TGAAACAAGCGTGCGGGCACCCAGCCGACCGAAGAGGCATAATGTGCAAGCCGAGGATCAGCCCG
* * *
19379865 GTCTCCCTCTGCGTCCTGTCGATCCCACTGTCGGTCCTGCTA
321 ATCCCCCTCT-CGTCATGTC-ATCCCAC-GTC-G-CCTGCTA
* *
19379907 CCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCAC
1 CCACAACCCTCGATCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** **** * ** * * *
19379972 GAAATGAGCGTGTGGGCACTCACCTAATTGGAGAGGCAGAATGCACAAGTTAGGGATTGGCTC-T
66 GAAACGAGCGTGTGGGTGCTCACC-AGGCAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGT
* * ** *
19380036 ATCCCCCTTGCGTGCTACCGATCCTGCTGTTGGTCCTGCTACTACAACCCTCGGTCCGATCTGAT
130 CTCCCCC-TGCATGCTA-CG-TCCT-CTG-TGGTCCTGCTACCGCAACCCTCGGTCTGATCTGAT
* *
19380101 CTTAGACTGGGAATGAACTCCGTATCCTTAGACATGGAATGAACTCCGTATG-GCTAAGCCAACC
190 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCG-TAAGTCAACC
* *
19380165 CACGAAACGAGCGTGCGGGC
254 CATGAAACAAGCGTGCGGGC
19380185 GCTCAGCCAG
Statistics
Matches: 772, Mismatches: 157, Indels: 118
0.74 0.15 0.11
Matches are distributed among these distances:
341 1 0.00
342 145 0.19
343 1 0.00
344 2 0.00
345 3 0.00
346 2 0.00
348 5 0.01
350 9 0.01
351 2 0.00
352 4 0.01
353 3 0.00
354 14 0.02
355 181 0.23
356 14 0.02
357 1 0.00
358 2 0.00
359 5 0.01
360 2 0.00
361 1 0.00
362 3 0.00
363 1 0.00
364 2 0.00
365 2 0.00
366 2 0.00
367 171 0.22
368 66 0.09
369 16 0.02
370 2 0.00
372 4 0.01
374 2 0.00
377 7 0.01
378 4 0.01
379 4 0.01
381 88 0.11
382 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (357 bp):
CCACAACCCTCGATCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGTGGGTGCTCACCAGGCAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGTC
TCCCCCTGCATGCTACGTCCTCTGTGGTCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAA
CAAGCGTGCGGGCACCCAGCCGACCGAAGAGGCATAATGTGCAAGCCGAGGATCAGCCCGATCCC
CCTCTCGTCATGTCATCCCACGTCGCCTGCTA
Found at i:19379768 original size:26 final size:26
Alignment explanation
Indices: 19379734--19379786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19379724 TTGGTCTGCT
*
19379734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19379760 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19379786 C
1 C
19379787 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19380130 original size:26 final size:26
Alignment explanation
Indices: 19380101--19380151 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19380091 CCGATCTGAT
19380101 CTTAGAC-TGGGAATGAACTCCGTATC
1 CTTAGACAT-GGAATGAACTCCGTATC
19380127 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
19380152 GGCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:19380315 original size:197 final size:196
Alignment explanation
Indices: 19379931--19380315 Score: 538
Period size: 196 Copynumber: 2.0 Consensus size: 196
19379921 CTGGCTAGGG
* * *
19379931 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAATGAGCGTGTGGGCACTCACC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCACC
*** * ** * * *
19379996 TAATTGGAGAGGCAGAATGCACAAGTTAGGGATTGGCTCTATCCCCCTTGCGTGCTACCGATCCT
66 TAACCAGAGAGGCAGAATGCACAAGTCAGGGACCGGCCCGATCCCCCCTGCGTGCTACCGATCCT
* * *
19380061 GCTGTTGGTCCTGCTACTACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
131 GCTGTTGGTCCTGCTACCACAAACCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
19380126 C
196 C
* *
19380127 CTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA-C
* ** *
19380192 C-AGCCAGAGAGGCAGAATGCGTAAGTCGGGGACCGGCCCGATCCTCCCCTGCGTGCTACCGATC
65 CTAACCAGAGAGGCAGAATGCACAAGTCAGGGACCGGCCCGATCC-CCCCTGCGTGCTACCGATC
* *
19380256 CTGCTGTTGGTCCTGCTACCGCAAACCTTGGTCCGATCCGATCTTAGACTGGGAATGAAC
129 CTGCTGTTGGTCCTGCTACCACAAACCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC
19380316 AACGTATGCT
Statistics
Matches: 164, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
196 89 0.54
197 75 0.46
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (196 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCACC
TAACCAGAGAGGCAGAATGCACAAGTCAGGGACCGGCCCGATCCCCCCTGCGTGCTACCGATCCT
GCTGTTGGTCCTGCTACCACAAACCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
C
Found at i:19380810 original size:26 final size:26
Alignment explanation
Indices: 19380774--19380826 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19380764 CCGGCCCGAT
* *
19380774 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19380800 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19380826 C
1 C
19380827 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19381576 original size:26 final size:26
Alignment explanation
Indices: 19381532--19381584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19381522 TCGATTTGAT
19381532 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
19381558 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATCAACTCCATATG
19381584 C
1 C
19381585 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:19382389 original size:525 final size:523
Alignment explanation
Indices: 19381347--19383169 Score: 1159
Period size: 513 Copynumber: 3.5 Consensus size: 523
19381337 GTCGGTCCCG
* *
19381347 CTGCCACAACCTTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACC
1 CTGCCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACC
** * * * * * *
19381412 CACGAAACGGGTGTGCGGGCGCTCAGTCGATCGGAAAGGCAGAATGCGTAAGTCGGGGATCGGCC
66 CACGAAACAAGCGTGCGGGCGCTCAGTCGACCGGAAAGGCAAAATGCGCAAGCCGAGGATCGGCC
* * * ** *
19381477 GAATCCCCCATGCATGCTGTCGATCCTGCTGCCGCAACCCTTTGTTCGATTTGATCTTAGACTGG
131 GAATCCCCCATGCATGCTGTCGATCCTACTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGA
19381542 GAATCAACTCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAG
196 GAATCAACTCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAG
* **
19381607 CGTGCGGGCGCTCAGCCAGCTAGAGAGGTCGATGGACAGGCAGAATGCGCAAGTCGGGGATCAAC
261 CGTGCGGGCACTCAGCCAGCTAGAGAGGTCGATGGACAGGCAGAATGCGCAAGTCAAGGATCAAC
* * * ** *
19381672 CTGGTCCCCCCTGCGTCCTGTCGATCCTGTTGCTGGTCCTGCTGCCGTAACCCTTGATCCAATCT
326 CCGGTCCCCCCTGCGTCATGTCGA--CTGTTGCTGATCCTGCTGCCACAACCCTCGATCCAATCT
** ** * *
19381737 GATTTTAGACTGGGAATGAACTCTGTATACCTAATTCAACCCACGAAACAAGCGTTCAGGCACTG
389 GAGCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCCACGAAACAAGCGTGCAGGCACTC
* * *
19381802 AGTCGATCGGAGAGGCATAATGCACAAGTCGGGGATTAGCTCGGCCCCCCTCTGCGTGCTACCGG
454 AGCCGATCGGAGAGGCAGAATGCACAAGTCGGGGATGAGCTCGGCCCCCCTCTGCGTGCTACCGG
19381867 TATGA
519 TATGA
* * * *
19381872 CTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACC
1 CTGCCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACC
* * * * *
19381937 CACGAAACAAGCGTGTGGGTGCTCAG-CAGGCCGGAGAGGCAAAATGTGCAAGCCGAGGATCGGC
66 CACGAAACAAGCGTGCGGGCGCTCAGTC-GACCGGAAAGGCAAAATGCGCAAGCCGAGGATCGG-
* * * *
19382001 CCG-GTCCCCC-TGCGTGCTGAT-GATCCTAC-GTCGCAA-CCTTCGGTCCGATCCGATTTTAGA
129 CCGAATCCCCCATGCATGCTG-TCGATCCTACTGCCGCAACCCTT-GGTCCGATCCGATCTTAGA
* * * *
19382061 CTGAGAATGAACTTCGTATGCTTAGACTAGGGATGAAC-CTCGTATGCCTAAGTCAACCCATGAA
192 CTGAGAATCAACTCCATATGCTTAGACTAGGGATGAACTC-CATATGCCTAAGTCAACCCATGAA
* * * * *
19382125 ACGAGCGTGTGGGCACTCAGCC-GACTGGAGAGG-CTGATCGGAGAGGTATAATGCGCAAGTCAA
256 ACGAGCGTGCGGGCACTCAGCCAG-CTAGAGAGGTC-GAT-GGACAGGCAGAATGCGCAAGTCAA
* * * *
19382188 GGATCAGCCCGGT-CCCCCT-C-T-ATGT-G-CTG-T-C-GATCCTGCTGCCACCACCCTCGGTT
318 GGATCAACCCGGTCCCCCCTGCGTCATGTCGACTGTTGCTGATCCTGCTGCCACAACCCTCGATC
* * * * ** *
19382244 CGA-CTGGGGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGTGTGC
383 CAATCT-GAGCTTAGAC-TGGGAATGAACTCTGTATACCTAAGCCAACCCACGAAACAAGCGTGC
*** * *
19382307 AGGCACTCAGCC-AGTCGGAGAGGCAGAATGTGTAAGTCGGGGATCGA-CTCGGTCTCCCC-CTA
446 AGGCACTCAGCCGA-TCGGAGAGGCAGAATGCACAAGTCGGGGAT-GAGCTCGG-CCCCCCTCTG
* * *
19382369 CATGCTACCGATCCTG-
508 CGTGCTACCGGT-ATGA
* *
19382385 CTACCGCAACCCTAGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGA
1 CTGCCACAACCC----T-CAG-----TC-T-GACT----A-G------G---GCTTAGACATGGA
** * * * * * * *
19382450 ATGAACTCTGTATGCCTAAGCTAACCCACAAAACAAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
40 ATGAACTCCCTATGCCGAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGACCGGAAAGG
* * * * * * * *
19382515 CAAAATTCGTAAGTCG-GAGACCGGTC-AGGTCCACCC---C-TGC-GT-G------CTGTCGTA
105 CAAAATGCGCAAGCCGAG-GATCGGCCGA-ATCC-CCCATGCATGCTGTCGATCCTACTGCCGCA
* * * * * *
19382566 ACCCTCGGTCTGATCCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACT
167 ACCCTTGGTCCGATCCGATCTTAGACTGAGAATCAACTCCATATGCTTAGACTA-GGGATGAACT
** * * * * * * *
19382630 CTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGGC-CG-GA----GA-GG
231 CCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGCTAGAGAGGTCGATGG
* * * * * *
19382688 -CA---A-AATGTGTAAGTCAAGGGTCGACCCGATCCCCCCT--G-C--GT-G-CTG-T--AGAT
296 ACAGGCAGAATGCGCAAGTCAAGGATCAACCCGGTCCCCCCTGCGTCATGTCGACTGTTGCTGAT
* * * * * * * *
19382738 CCTGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAGTGAACTCTGTATGCCTAAGTC
361 CCTGCTGCCACAACCCTCGATCCAATCTGAGCTTAGACTGGGAATGAACTCTGTATACCTAAGCC
* * * * * * * * * ** **
19382803 AACCCACAAAACGAA-CGTGCGGGCGCTAAGCTGACCGGAGAAGCATAATGCATAAACCAAGGAT
426 AACCCACGAAAC-AAGCGTGCAGGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGTCGGGGAT
* * * ** * * * * *
19382867 CAACCCGATCCCCCTCTACGTGCTGCCAGTCTCA
490 GAGCTCGGCCCCCCTCTGCGTGCTACCGGTATGA
* * * * * *
19382901 CTGCCAGAACTCTC-GATCTGGCTAGGGCTTAGACATGGAATGAACACCCTACGCCTAAGCCAAC
1 CTGCCACAACCCTCAG-TCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAAC
* * * * * * * * *
19382965 CCATGAAACAGGCGTGCGGGTGCTCAGCCGACCGGAAAGGCAGAATGCACAAGTCGTGGATCAGC
65 CCACGAAACAAGCGTGCGGGCGCTCAGTCGACCGGAAAGGCAAAATGCGCAAGCCGAGGATCGGC
* * * * * *
19383030 TCG-GTACCCCC-TGCGTGTTGTCGATCCTACTGTCGCAACCCTCAGGT-CGATCTGATCTTAGA
130 -CGAAT-CCCCCATGCATGCTGTCGATCCTACTGCCGCAACCCT-TGGTCCGATCCGATCTTAGA
* * * * * *
19383092 TTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
192 CTGAGAATCAACTCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAA
*
19383157 CAAGCGTGCGGGC
257 CGAGCGTGCGGGC
19383170 GTTCAGCCGG
Statistics
Matches: 1032, Mismatches: 188, Indels: 180
0.74 0.13 0.13
Matches are distributed among these distances:
490 87 0.08
491 4 0.00
492 1 0.00
493 3 0.00
494 2 0.00
495 1 0.00
499 1 0.00
500 1 0.00
501 94 0.09
502 3 0.00
504 3 0.00
505 1 0.00
506 3 0.00
510 1 0.00
511 1 0.00
512 4 0.00
513 127 0.12
514 10 0.01
515 9 0.01
516 127 0.12
517 26 0.03
518 9 0.01
519 1 0.00
520 3 0.00
521 2 0.00
522 10 0.01
523 116 0.11
524 49 0.05
525 117 0.11
526 3 0.00
528 2 0.00
529 4 0.00
530 97 0.09
531 5 0.00
535 2 0.00
536 2 0.00
537 3 0.00
538 3 0.00
539 91 0.09
540 4 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (523 bp):
CTGCCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACC
CACGAAACAAGCGTGCGGGCGCTCAGTCGACCGGAAAGGCAAAATGCGCAAGCCGAGGATCGGCC
GAATCCCCCATGCATGCTGTCGATCCTACTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGA
GAATCAACTCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAG
CGTGCGGGCACTCAGCCAGCTAGAGAGGTCGATGGACAGGCAGAATGCGCAAGTCAAGGATCAAC
CCGGTCCCCCCTGCGTCATGTCGACTGTTGCTGATCCTGCTGCCACAACCCTCGATCCAATCTGA
GCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCCACGAAACAAGCGTGCAGGCACTCAG
CCGATCGGAGAGGCAGAATGCACAAGTCGGGGATGAGCTCGGCCCCCCTCTGCGTGCTACCGGTA
TGA
Found at i:19382450 original size:26 final size:26
Alignment explanation
Indices: 19382412--19382464 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19382402 CCAGTCCAAT
19382412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19382438 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19382464 C
1 C
19382465 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19383122 original size:26 final size:26
Alignment explanation
Indices: 19383086--19383138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19383076 TCGATCTGAT
*
19383086 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19383112 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19383138 C
1 C
19383139 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19383485 original size:168 final size:170
Alignment explanation
Indices: 19383112--19383732 Score: 582
Period size: 168 Copynumber: 3.7 Consensus size: 170
19383102 ACTCCGTATG
* * *
19383112 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * *
19383177 CGGCCAGAAAGGCATAATGCGCAAGCCGGGGATTAGCTCGATCCCCCTCC-GCGTGCTGCCGATC
66 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATGA-CCCGAT-CCCCTCCTACGTGCTGCTGATG
** * * * * * **
19383241 CCACTG-TCGGTCCTGCTACCACAACCCTCGGTC-CAGCTAGGG
129 CTGCTGCT-GGTCCTGCTACCGCAACCCTTGGTCTGATC-CGAT
* * *
19383283 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGAGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
*
19383347 CCGGCCAGAGAGGCAGAATGCGCAA-CC-GGGATGACCCGGTCCCCTCCTACGTGCTGCTGATGC
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATGACCCGATCCCCTCCTACGTGCTGCTGATGC
* *
19383410 TGCTGCTGGTCCTGCTACTGCAATCCTTGGTCTGATCCGAT
130 TGCTGCTGGTCCTGCTACCGCAACCCTTGGTCTGATCCGAT
* * *
19383451 CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
* *
19383516 TGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGAT--CC-CCTA-----TG-TG-TGC
66 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGAT-GACCCGATCCCCTCCTACGTGCTGCTGATGC
* *
19383571 TG-T-C-GATCCTGCTACCGCAACCCTTAGT-TCGATCCGAT
130 TGCTGCTGGTCCTGCTACCGCAACCCTTGGTCT-GATCCGAT
* * * ** * * * **
19383609 CTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGGTGCTGAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
* * * * * *
19383674 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCC-CTCTGCGTGCTGC
66 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGAT-GACCCGATCCCCTC-CTACGTGCTGC
19383733 CGGTCCCACT
Statistics
Matches: 378, Mismatches: 54, Indels: 40
0.80 0.11 0.08
Matches are distributed among these distances:
157 1 0.00
158 119 0.31
159 1 0.00
160 4 0.01
161 7 0.02
162 2 0.01
163 2 0.01
166 2 0.01
167 8 0.02
168 126 0.33
169 13 0.03
170 7 0.02
171 85 0.22
172 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATGACCCGATCCCCTCCTACGTGCTGCTGATGCT
GCTGCTGGTCCTGCTACCGCAACCCTTGGTCTGATCCGAT
Found at i:19383698 original size:158 final size:158
Alignment explanation
Indices: 19383419--19383719 Score: 417
Period size: 158 Copynumber: 1.9 Consensus size: 158
19383409 CTGCTGCTGG
* * *
19383419 TCCTGCTACTGCAATCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
1 TCCTGCTACCGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATCAACTACGTATGCCTAAGC
* * * *
19383484 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGAT
66 CAACCCATAAAACGAGCGTGCAGGTGCTAAGCTGACCAGAGAGGCAGAATGCGCAAGCCGGGGAT
*
19383549 CGACCTGATCCCCTATGTGTGCTGTCGA
131 CGACCCGATCCCCTATGTGTGCTGTCGA
* *
19383577 TCCTGCTACCGCAACCCTTAGT-TCGATCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAG
1 TCCTGCTACCGCAACCCTTGGTCT-GATCCGATCTTAGACTGGGAATCAACTACGTATGCCTAAG
* * * * * *
19383641 TCAACCCATAAAATGAGCGTGCAGGTGCTGAATC-GACCGGAGAGGCATAATGCGCAAGTCGGGG
65 CCAACCCATAAAACGAGCGTGCAGGTGCT-AAGCTGACCAGAGAGGCAGAATGCGCAAGCCGGGG
*
19383705 ATCGGCCCGATCCCC
129 ATCGACCCGATCCCC
19383720 CTCTGCGTGC
Statistics
Matches: 124, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
157 1 0.01
158 121 0.98
159 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
TCCTGCTACCGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATCAACTACGTATGCCTAAGC
CAACCCATAAAACGAGCGTGCAGGTGCTAAGCTGACCAGAGAGGCAGAATGCGCAAGCCGGGGAT
CGACCCGATCCCCTATGTGTGCTGTCGA
Found at i:19383805 original size:159 final size:158
Alignment explanation
Indices: 19383443--19383951 Score: 409
Period size: 158 Copynumber: 3.2 Consensus size: 158
19383433 TCCTTGGTCT
* * * *
19383443 GATCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
1 GATCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGG
* * * *
19383508 TGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCTATGTGTGCTG
66 TGCTAAGCTGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTATGCGTGCTG
* ** * *
19383573 TCGATCCTGCTACCGCAACCCTTAGTTC
131 CCGATCCCACTACCACAACCCTCAGTTC
* * * *
19383601 GATCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGG
1 GATCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGG
* * * * * *
19383666 TGCTGAATC-GACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGC
66 TGCT-AAGCTGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCTATGCGTGC
* * *
19383730 TGCCGGTCCCACTACCACAACCGTCGGTTC
129 TGCCGATCCCACTACCACAACCCTCAGTTC
* * * * * * * *
19383760 G-GCTGGGGCTTAGTCAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGGGTGT
1 GATC-CGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGA-GCGTGC
* * * * * * * * *** *
19383822 GGGTGCTCAA-CCGGCCAGAGAGGTAGAGTGCGTAA-TCGAGGATCGACCCGATCCCCCCGGCAT
63 AGGTGCT-AAGCTGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTATGCGT
* ** ** * * *
19383885 GCTACCGATCCTGCTGTCGCAACCCACAGTCC
127 GCTGCCGATCCCACTACCACAACCCTCAGTTC
* * *
19383917 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
1 GATCCGAGCTTAGACTGGGAATGAACTCCGTATGC
19383952 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 67, Indels: 17
0.77 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 53 0.19
158 117 0.42
159 104 0.38
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GATCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGG
TGCTAAGCTGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTATGCGTGCTG
CCGATCCCACTACCACAACCCTCAGTTC
Found at i:19383969 original size:26 final size:26
Alignment explanation
Indices: 19383925--19383977 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19383915 CCGGTCCGAT
*
19383925 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATCAACTTC-GTATG
*
19383951 CTTAGACTGGGGATCAACTTCGTATG
1 CTTAGACTGGGAATCAACTTCGTATG
19383977 C
1 C
19383978 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTTCGTATG
Found at i:19384750 original size:26 final size:26
Alignment explanation
Indices: 19384706--19384755 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
19384696 CAGTTCGATG
** *
19384706 TTAGACTGGGAATGGACTCCGTATGC
1 TTAGACTGGGAATAAACTCAGTATGC
*
19384732 TTAGACTGGGGATAAACTCAGTAT
1 TTAGACTGGGAATAAACTCAGTAT
19384756 AACTCAGTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCAGTATGC
Found at i:19385259 original size:26 final size:26
Alignment explanation
Indices: 19385230--19385306 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
19385220 CTGATCCGAT
*
19385230 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
19385256 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
19385282 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGGATGAACTCCGTAT
19385307 ACCTAAGTCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:19385665 original size:26 final size:26
Alignment explanation
Indices: 19385636--19385688 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19385626 CTGGTCCAAT
*
19385636 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19385662 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19385688 C
1 C
19385689 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19385964 original size:159 final size:157
Alignment explanation
Indices: 19385662--19386322 Score: 621
Period size: 159 Copynumber: 4.2 Consensus size: 157
19385652 ACTCTGTATG
* * * *
19385662 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAAC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** ** * *
19385727 CGATCGGAGAGGCAGAATTCACAAGTCGGGGATCGATAAGGTCCACCCCTGCGTGCTGTCGATCT
66 CGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGA-CCGATCC-CCCCTGCGTGCTGTCGATCC
* *
19385792 TGCTGCCATAACCCTCGGTCCGATCTGAT
129 TACTGCCACAACCCTCGGTCCGATCTGAT
*
19385821 CTTAGACAGGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
19385886 CGACCGAAGAGGCAGAATGCGTAAGTCAGGGATCGGACCGATCCCTCCCTGCATGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGTAAGTCGGGGATC-GACCGATCCC-CCCTGCGTGCTGTCGATCC
* ** * *
19385951 TACTACTGCAACCCTCGGTCTGATCCGAT
129 TACTGCCACAACCCTCGGTCCGATCTGAT
* * * * *
19385980 CCTAGACCGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
19386045 CGACCGGGGAGGCATAATGCGTAAGTCGAGGATCGACCTAATCCCCCTCTGCGTGCTG-CCAGTC
66 CGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACC-GATCCCCC-CTGCGTGCTGTCGA-TC
* * * * **
19386109 CTGCTGCCACAACCCTCGATCTG-GCTAGGG
128 CTACTGCCACAACCCTCGGTCCGATCT-GAT
* * * ** * * *
19386139 CTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCGTGAAACGGGCGTACGGGCACTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
19386204 TTGTCGGAA-AGGTA-AATACGTAAGTCGGGGATCAGCCCGGTCCCTCCTGCGTGCTATCGATCC
66 -CGACCGAAGAGGCAGAATGCGTAAGTCGGGGATC-GACCGATCCCCCCTGCGTGCTGTCGATCC
*** *
19386267 TACTGTTGCAACCCTCGGTTC-AGTCTGAT
129 TACTGCCACAACCCTCGGTCCGA-TCTGAT
* *
19386296 CTTAGACTGGAAATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
19386323 TTAGACTGGG
Statistics
Matches: 403, Mismatches: 88, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
157 49 0.12
158 36 0.09
159 313 0.78
160 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACCGATCCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCCGATCTGAT
Found at i:19386337 original size:26 final size:26
Alignment explanation
Indices: 19386296--19386348 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19386286 TCAGTCTGAT
19386296 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
19386322 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
19386348 C
1 C
19386349 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:19386691 original size:26 final size:26
Alignment explanation
Indices: 19386662--19386714 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19386652 CTGGTCTGAT
*
19386662 CTTAGAC-TGGTAATGAACTCTGTATG
1 CTTAGACAT-GTAATGAACTCCGTATG
19386688 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGACATGTAATGAACTCCGTATG
19386714 C
1 C
19386715 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACATGTAATGAACTCCGTATG
Found at i:19386806 original size:366 final size:366
Alignment explanation
Indices: 19386289--19386978 Score: 849
Period size: 366 Copynumber: 1.9 Consensus size: 366
19386279 CCTCGGTTCA
*
19386289 GTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
1 GTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
19386354 TCAACCCATGAAACAAGCGTACGAGCACTCAGCCGGCCGGAGAGGCATAATGCATAAGCCGATGA
66 CCAACCCATGAAACAAGCGTACGAGCACTCAGCCAGCCGGAGAGGCAGAATGCAAAAGCCGAGGA
* * * * * * *
19386419 TTAGCTCGGACCCCTCTGCGTGCAGCTGATCCCT-CTG-TCGGTCTTGCTGCCACAACCCTTGGT
131 TTAGATCCGACCCCCCTGCGTGCAGC-CATCCCTGCTGCT-GGTCCTGCTACCACAACCCTCGGT
* * * * ** *
19386482 CTAGCT-AGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTG
194 C-AGCTCAGAGCTTAGAC-TGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAACGTA
**
19386545 CGGGTGCTCAG-TCGACC-GAAGAGGCAGAATGTGCAAGTCG-GGAATCGACCCGATCCCCCCTG
257 CGGGTGCTCAGCT-GACCAG-AGAGGCAGAATACGCAAGTCGAGGAAT-GACCCGATCCCCCCTG
19386607 CGTGCTACCGATCGTGCTGCTGGTCCTGCTACTGCAACCCTCGATCTG
319 CGTGCTACCGATCGTGCTGCTGGTCCTGCTACTGCAACCCTCGATCTG
* * *
19386655 GTCTGATCTTAGACTGGTAATGAACTCTGTATGCTTAGACAT-GTAATGAACTCCGTATGCCTAA
1 GTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* * * ** * *
19386719 GCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCAAAAGTCGGGG
65 GCCAACCCATGAAACAAGCGTACGAGCACTCAGCCAGCCGGAGAGGCAGAATGCAAAAGCCGAGG
* ** *
19386784 A-TCGATCCGATCCCCCCTGCGTGTTGCCATTCCTGCTGCTGGTCCTGCTACCACAACCCTCGGT
130 ATTAGATCCGA-CCCCCCTGCGTGCAGCCATCCCTGCTGCTGGTCCTGCTACCACAACCCTCGGT
* * * *
19386848 CCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAACGTACG
194 CAGCTCAGAGCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAACGTACG
* * *
19386913 GGTGCTCAGCTGGCCAGAGAGGCAGAATACGCAAGTCGAGGACTGACCCGATCCCCCCTGTGTGC
259 GGTGCTCAGCTGACCAGAGAGGCAGAATACGCAAGTCGAGGAATGACCCGATCCCCCCTGCGTGC
19386978 T
324 T
19386979 GTCGATCCTA
Statistics
Matches: 272, Mismatches: 43, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
365 14 0.05
366 250 0.92
367 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (366 bp):
GTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCCATGAAACAAGCGTACGAGCACTCAGCCAGCCGGAGAGGCAGAATGCAAAAGCCGAGGA
TTAGATCCGACCCCCCTGCGTGCAGCCATCCCTGCTGCTGGTCCTGCTACCACAACCCTCGGTCA
GCTCAGAGCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAACGTACGGG
TGCTCAGCTGACCAGAGAGGCAGAATACGCAAGTCGAGGAATGACCCGATCCCCCCTGCGTGCTA
CCGATCGTGCTGCTGGTCCTGCTACTGCAACCCTCGATCTG
Found at i:19386825 original size:196 final size:196
Alignment explanation
Indices: 19386491--19386884 Score: 569
Period size: 196 Copynumber: 2.0 Consensus size: 196
19386481 TCTAGCTAGG
* *
19386491 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* *** *
19386556 TCGACCGAAGAGGCAGAATGTGCAAGTCGGGAATCGACCCGATCCCCCCTGCGTGCTACCGATCG
66 CCGACCGAAGAGGCAGAATGCAAAAGTCGGGAATCGACCCGATCCCCCCTGCGTGCTACCGATCC
** * * *
19386621 TGCTGCTGGTCCTGCTACTGCAACCCTCGATCTGGTCTGATCTTAGACTGGTAATGAACT-CTGT
131 TGCTGCTGGTCCTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTAC-GT
19386685 AT
195 AT
*
19386687 GCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
19386752 CC-AGCCGGAGAGGCAGAATGCAAAAGTCGGGGATCGATCCGATCCCCCCTGCGTGTTGCC-ATT
66 CCGA-CCGAAGAGGCAGAATGCAAAAGTCGGGAATCGACCCGATCCCCCCTGCGTGCTACCGA-T
*
19386815 CCTGCTGCTGGTCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACG
129 CCTGCTGCTGGTCCTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTACG
19386880 TAT
194 TAT
19386883 GC
1 GC
19386885 CTAAGCCAAC
Statistics
Matches: 176, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
195 2 0.01
196 173 0.98
197 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGACCGAAGAGGCAGAATGCAAAAGTCGGGAATCGACCCGATCCCCCCTGCGTGCTACCGATCC
TGCTGCTGGTCCTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTACGTA
T
Found at i:19387105 original size:158 final size:158
Alignment explanation
Indices: 19386838--19387359 Score: 582
Period size: 158 Copynumber: 3.3 Consensus size: 158
19386828 CTGCTACCAC
*
19386838 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * *
19386903 CGAACGTACGGGTGCTCAGCTGGCCAGAGAGGCAGAATACGCAAGTCGAGGA-CTGACCCGATCC
66 CGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCGATCC
*
19386967 CCCCTGTGTGCTGTCGATCCTACTGCCGT
130 CCCCTGTGTGCTGTCGATCCTGCTGCCGT
* * * * * *
19386996 AACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCATGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * *
19387061 CGAGCGTACAGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCC
66 CGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCC
* * * * * **
19387126 CCTCTGCGTACTGTCGGTCCCGTTGCCAC
131 CC-CTGTGTGCTGTCGATCCTGCTGCCGT
* * * ** *
19387155 AACTCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 AACCCTCGGTCCGGTC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* ** * * * * *
19387218 AACGGGCGTGTGGGCACTCAACCGGTCAGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGATC
64 AACGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC
* * *
19387283 CCTCCGGTGTGCTGTCGATCCTGCTGTCGT
129 CCCCCTGTGTGCTGTCGATCCTGCTGCCGT
**
19387313 AACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
19387360 TTAGACATGG
Statistics
Matches: 291, Mismatches: 67, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 167 0.57
159 122 0.42
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCC
CCCTGTGTGCTGTCGATCCTGCTGCCGT
Found at i:19387283 original size:317 final size:323
Alignment explanation
Indices: 19386699--19387359 Score: 759
Period size: 317 Copynumber: 2.0 Consensus size: 323
19386689 TTAGACATGT
* * *
19386699 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGCCAGCCGGAGAG
* *
19386764 GCAGAATGCAAAAGTCGGGGATCGATCCGATCCCCCCTGCGTGTTGCCATTCCTGCTGCTGGTCC
66 GCAGAATGCAAAAGCCGGGGATCGACCCGATCCCCCCTGCG-GTT--CA-T-CTGCTGCTGGTCC
* * *
19386829 TGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAA
126 CGCTACCACAACCCTCGGTCCGGTCCGAGCTTAGACTGGGAATGAACTACCTATGCCTAAGCCAA
** * * * *
19386894 CCCACGAAACGAACGTACGGGTGCTCAGCTGGCCAGAGAGGCAGAATACGCAAGTCGAGGACTGA
191 CCCACGAAACGAACGTACGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCGAGGACTGA
*
19386959 CCCGATCCCCCCTGTGTGCTGTCGATCCTACTGCCGTAACCCTCAGTCCAGTCCAATCTTAGACT
256 CCCGATCCCCCCGGTGTGCTGTCGATCCTACTGCCGTAACCCTCAGTCCAGTCCAATCTTAGACT
19387024 GGG
321 GGG
* * *
19387027 AATGAACTCCGTATGCCTAAGTCAATCCATGAAACGAGCGTACAGGCGCTGAGCC-GACCGGAGA
1 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGCCAG-CCGGAGA
* ** *
19387091 GGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGC-G-T-A-CTG-T-C-GGTCCCGT
65 GGCAGAATGCAAAAGCCGGGGATCGACCCGATCCCCC-CTGCGGTTCATCTGCTGCTGGTCCCGC
* * * * * *
19387149 TGCCACAACTCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
129 TACCACAACCCTCGGTCCGGTC-CGAGCTTAGAC-TGGGAATGAACTACCTATGCCTAAGCCAAC
** ** * * * *
19387212 CCACGAAACGGGCGTGTGGGCACTCAACCGGTCAGAGAGGTAGAATGCACAAGCCGGGGA-TCGA
192 CCACGAAACGAACGTACGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCGAGGACT-GA
* * * * *** *
19387276 CCCGATCCCTCCGGTGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTTTGGTCCGATCTTAGACT
256 CCCGATCCCCCCGGTGTGCTGTCGATCCTACTGCCGTAACCCTCAGTCCAGTCCAATCTTAGACT
19387341 GGG
321 GGG
19387344 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
19387360 TTAGACATGG
Statistics
Matches: 284, Mismatches: 44, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
316 2 0.01
317 180 0.63
318 2 0.01
319 1 0.00
320 3 0.01
323 1 0.00
326 1 0.00
327 2 0.01
328 88 0.31
329 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (323 bp):
AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGCCAGCCGGAGAG
GCAGAATGCAAAAGCCGGGGATCGACCCGATCCCCCCTGCGGTTCATCTGCTGCTGGTCCCGCTA
CCACAACCCTCGGTCCGGTCCGAGCTTAGACTGGGAATGAACTACCTATGCCTAAGCCAACCCAC
GAAACGAACGTACGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCGAGGACTGACCCGA
TCCCCCCGGTGTGCTGTCGATCCTACTGCCGTAACCCTCAGTCCAGTCCAATCTTAGACTGGG
Found at i:19387362 original size:26 final size:26
Alignment explanation
Indices: 19387333--19387384 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19387323 TTGGTCCGAT
19387333 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19387359 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19387385 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19387746 original size:156 final size:155
Alignment explanation
Indices: 19387358--19387965 Score: 475
Period size: 159 Copynumber: 3.8 Consensus size: 155
19387348 AACTCCGTAT
* * * ** *
19387358 GCTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTG-CGGCGCTCAG
** * * * * * * * *
19387423 TCGACCGAAGAGGA-AGAATGCGTAAGCCAGGGATTGGCTCGGTCCCCCTCTATGTGCTGCCGAT
65 TCGGTCGGAGA-GATAGAATGCGCAAGCCGGGGATCGGCCCAGT-CCCC-CTACGTGCTGTCGAT
* ***
19387487 CCCGTTGCCACAACCCTCGGTCTGG-CTGGG
127 -CCGCTGCCACAACCCTCGGTCTGGTC-CAA
* * * *
19387517 GCTTAGACATGGAATCAACTCCCTATACCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGCGCTCAG
* * *
19387582 CCGGTCGGAGAGATAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTACGTGTTGTCGATCTT
65 TCGGTCGGAGAGATAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTACGTGCTGTCGATC-C
* *
19387647 GCTGTCGCAACCCTCGGTCTGGTCCAA
129 GCTGCCACAACCCTCGGTCTGGTCCAA
* * * * * * *
19387674 TCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGATCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCG-GCGCTCAG
** **
19387738 TCGGTCGGAGAGGTCGACTGAAGAGGCAGAATGTACAAGCCGGGGATCAACCCAGTCCTCCTCTA
65 TCGGTCGGAGA----GA-T--------AGAATGCGCAAGCCGGGGATCGGCCCAGTCC-CC-CTA
* ****
19387803 CGTGCTGTCGGTCCGCTGCCACAACCCTCGGTCTGGTTGGG
115 CGTGCTGTCGATCCGCTGCCACAACCCTCGGTCTGGTCCAA
* *
19387844 GCTTAGACGTGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGGGCGTGCGGCTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGC-GCTCAG
* ** * * * *
19387909 TCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTGCGTGCT
65 TCGGTCGGAGAGATAGAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCCTACGTGCT
19387966 ACCGTAACCC
Statistics
Matches: 355, Mismatches: 71, Indels: 48
0.75 0.15 0.10
Matches are distributed among these distances:
155 1 0.00
156 55 0.15
157 46 0.13
158 31 0.09
159 89 0.25
160 2 0.01
161 1 0.00
167 1 0.00
169 27 0.08
170 32 0.09
171 70 0.20
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCGCTCAGT
CGGTCGGAGAGATAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTACGTGCTGTCGATCCGC
TGCCACAACCCTCGGTCTGGTCCAA
Found at i:19387887 original size:171 final size:169
Alignment explanation
Indices: 19387604--19387921 Score: 406
Period size: 171 Copynumber: 1.9 Consensus size: 169
19387594 ATAGAATGCG
** * * * *
19387604 CAAGCCGGGGATCGGCCCAGTCCCCCTACGTGTTGTCGATCTTGCTGTCGCAACCCTCGGTCTGG
1 CAAGCCGGGGATCAACCCAGTCCCCCTACGTGCTGTCGATCTCGCTGCCACAACCCTCGGTCTGG
* * * *
19387669 TCCAATCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGC-G
66 TCCAAGCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCG-GCTG
*
19387733 ATCAGTCGGTCGGAGAGGTCGACTGAAGAGGCAGAATGTA
130 ATCAGTCAGTCGGAGAGGTCGACTGAAGAGGCAGAATGTA
*
19387773 CAAGCCGGGGATCAACCCAGTCCTCCTCTACGTGCTGTCGGTC-CGCTGCCACAACCCTCGGTCT
1 CAAGCCGGGGATCAACCCAGTCC-CC-CTACGTGCTGTCGATCTCGCTGCCACAACCCTCGGTCT
**** * * *
19387837 GGTTGGGGCTTAGACGTGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGGGCGTGCGGC
64 GGTCCAAGCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGC
*
19387902 TGCTCAGTCAGTCGGAGAGG
128 TGATCAGTCAGTCGGAGAGG
19387922 CAGAATGCGC
Statistics
Matches: 125, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
169 21 0.17
170 32 0.26
171 72 0.58
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (169 bp):
CAAGCCGGGGATCAACCCAGTCCCCCTACGTGCTGTCGATCTCGCTGCCACAACCCTCGGTCTGG
TCCAAGCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGCTGA
TCAGTCAGTCGGAGAGGTCGACTGAAGAGGCAGAATGTA
Found at i:19388102 original size:146 final size:146
Alignment explanation
Indices: 19387847--19388111 Score: 313
Period size: 146 Copynumber: 1.8 Consensus size: 146
19387837 GGTTGGGGCT
*
19387847 TAGACGTGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGGGCGTGCGGCTGCTCAGTCA
1 TAGACGTGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGCTGCTCAGTCA
* * * * * *
19387912 GTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGTAACCCT
66 GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCGTAACCCT
19387977 CGATCCAGTCTGATCA
131 CGATCCAGTCTGATCA
* * * * * *
19387993 TAGAC-TGAGAATGAACTTCGTAT-GCTTAAGTCAACCTATGAAACGAGCGTGCGGGC-GCTCCG
1 TAGACGTG-GAATGAACTCCCTATGGC-TAAGCCAACCCACGAAACGAGCGTGC-GGCTGCTCAG
* * * *
19388055 TCGGTCGAAGAGGTAGAATTCGCAAGCCGGGG-TTGACCCGATCCCCCCTTACGTGCT
63 TCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCC-TACGTGCT
19388112 GTCGATCCTG
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
145 16 0.16
146 79 0.81
147 3 0.03
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (146 bp):
TAGACGTGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGCTGCTCAGTCA
GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCGTAACCCT
CGATCCAGTCTGATCA
Found at i:19388212 original size:26 final size:26
Alignment explanation
Indices: 19388161--19388213 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19388151 CCGGTCCGAT
*
19388161 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19388187 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19388213 C
1 C
19388214 CTAAACCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19388384 original size:26 final size:26
Alignment explanation
Indices: 19388346--19388398 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19388336 CCAGTCCAAT
*
19388346 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACACCCTATG
*
19388372 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCCTATG
19388398 C
1 C
19388399 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCCTATG
Found at i:19388441 original size:185 final size:185
Alignment explanation
Indices: 19388139--19388480 Score: 499
Period size: 185 Copynumber: 1.8 Consensus size: 185
19388129 TCCTGCTACA
* * *
19388139 GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAA
1 GCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAA
* * * * *
19388204 CTCTATATGCCTAAACCTACCTACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAA
66 CACCATATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAA
* *
19388269 TGCGCAAGCTGGGGATC-AGCCCGGTCCCTCCCCGCGTGCTACCGATCCTGCTGTC
131 TGCGCAAGCCGAGGATCGA-CCCGGTCCCTCCCCGCGTGCTACCGATCCTGCTGTC
* *
19388324 GCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAA
1 GCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAA
* * * * *
19388389 CACCGTATGCCTAAGCCAACCCATGAAATGAGTGT-CTGGGCGCTCAGCCGATCGGAGAGGCAGA
66 CACCATATGCCTAAACCAACCCACGAAACGAGCGTGC-GGGCGCTCAGCCGATCGGAGAGGCAGA
19388453 ATGCGCAAGCCGAGGATCGACCCGGTCC
130 ATGCGCAAGCCGAGGATCGACCCGGTCC
19388481 TCACCTGCAT
Statistics
Matches: 138, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
184 1 0.01
185 136 0.99
186 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (185 bp):
GCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAA
CACCATATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAA
TGCGCAAGCCGAGGATCGACCCGGTCCCTCCCCGCGTGCTACCGATCCTGCTGTC
Found at i:19388635 original size:136 final size:137
Alignment explanation
Indices: 19388382--19388636 Score: 372
Period size: 137 Copynumber: 1.9 Consensus size: 137
19388372 CTTAGACATG
* * * * *
19388382 GAATGAACACCGTATGCCTAAGCCAACCCATGAAATGAGTGTCTGGGCGCTCAGCCGATCGGAGA
1 GAATGAACACCGTATGCCTAAGCCAACCCATGAAATGAGCGTCTGGGCACTAAGCCGACCGAAGA
19388447 GGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCTCACCTGCATGCTGTCGGTCTGATCTGATCA
66 GGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCTCACCTGCATGCTGTCGGTCTGATCTGATCA
19388512 TAGACTA
131 TAGACTA
* * *
19388519 GAATGAACTCCGTATGCCTAAGTCAACCCGTGAAATGAGCGTGC-GGGCACTAAGCCGACCGAAG
1 GAATGAACACCGTATGCCTAAGCCAACCCATGAAATGAGCGT-CTGGGCACTAAGCCGACCGAAG
* * *
19388583 A-GCAGAATGCGCAAGCCGGGGATCGACCCGGTCC-CCCTCTGCGTGCTGTCGGTC
65 AGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCTCAC-CTGCATGCTGTCGGTC
19388637 CCGATGCCAC
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
135 2 0.02
136 47 0.45
137 55 0.52
138 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (137 bp):
GAATGAACACCGTATGCCTAAGCCAACCCATGAAATGAGCGTCTGGGCACTAAGCCGACCGAAGA
GGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCTCACCTGCATGCTGTCGGTCTGATCTGATCA
TAGACTA
Found at i:19388829 original size:158 final size:157
Alignment explanation
Indices: 19388495--19388851 Score: 414
Period size: 158 Copynumber: 2.3 Consensus size: 157
19388485 CTGCATGCTG
* * * * * ** *
19388495 TCGGTCTGATCTGATCATAGACTAGAATGAACTCCGTATGCCTAAGTCAACCCGTGAAATGAGCG
1 TCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
*
19388560 TGCGGGCACTAAGCCGACCGAAGAGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGC
66 TGCGGGCACTAAGCCGACCGAAGAGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGC
*
19388625 GTGCTGTCGGTCCCGATGCCACAACCC
131 GTGCTGTCGATCCCGATGCCACAACCC
* * * ** *
19388652 TCGATCCCG-CAAGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
1 TCGGTCCGGTC-TGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
* * * * *
19388716 CGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCAGTCCCCC-C
64 CGTGCGGGCACTAAGCCGACCGAAGA-GCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTC
* ** * *
19388780 TGCGTGCTGTTGAT-CTTACTGTCGCAACCC
128 TGCGTGCTGTCGATCCCGA-TGCCACAACCC
19388810 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGC
19388852 TTAGACTGGA
Statistics
Matches: 162, Mismatches: 32, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.01
157 15 0.09
158 112 0.69
159 34 0.21
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
TCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
TGCGGGCACTAAGCCGACCGAAGAGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGC
GTGCTGTCGATCCCGATGCCACAACCC
Found at i:19388854 original size:26 final size:26
Alignment explanation
Indices: 19388825--19388877 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19388815 CCGGTCTGAT
19388825 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
*
19388851 CTTAGACTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
19388877 C
1 C
19388878 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:19389319 original size:26 final size:26
Alignment explanation
Indices: 19389290--19389341 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19389280 TCTGGTCCGA
19389290 TCTTAGAATGGGAATGAACTCCGTAT
1 TCTTAGAATGGGAATGAACTCCGTAT
* *
19389316 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGAATGGGAATGAACTCCGTAT
19389342 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTTAGAATGGGAATGAACTCCGTAT
Found at i:19390042 original size:26 final size:26
Alignment explanation
Indices: 19389999--19390051 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19389989 CTGGTTTGAT
19389999 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19390025 CTTAGACTAGGGAA-GAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
19390051 C
1 C
19390052 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19390418 original size:26 final size:26
Alignment explanation
Indices: 19390380--19390432 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19390370 CTGGTCCGAT
19390380 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19390406 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19390432 C
1 C
19390433 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19391296 original size:26 final size:26
Alignment explanation
Indices: 19391258--19391310 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19391248 CTGGTCTGAT
*
19391258 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19391284 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19391310 C
1 C
19391311 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19391768 original size:26 final size:26
Alignment explanation
Indices: 19391732--19391784 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19391722 TCGATTTGAT
*
19391732 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19391758 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19391784 C
1 C
19391785 ATAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19392493 original size:26 final size:26
Alignment explanation
Indices: 19392455--19392507 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19392445 GGCTCAAACT
19392455 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19392481 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
19392507 C
1 C
19392508 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19392823 original size:157 final size:159
Alignment explanation
Indices: 19392480--19392823 Score: 387
Period size: 157 Copynumber: 2.2 Consensus size: 159
19392470 AACTCCGTAT
* *
19392480 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAA
* * * * *
19392545 CCGGTCGGAGAGGCAAAATGCGCAAGCCAAGGATCGGCCCGGTCCCTCTCTATATGCTGCTGGTC
66 CCGGTCGGAGAGGCAAAATGCACAAGCCAAGGATCGACCCGGTCCCTCCCTACATGCTGCTGATC
* * *
19392610 TTGCTGCCACAACCCTCGGTCCGGCTGAG
131 CTGCTGCCACAACCCTCGGTCCGGCTCAA
* *
19392639 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-ATGCGTGC-AGCACTCT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGAGCACTCA
* * * * * *
19392702 GCCGG-CTGGAGAGGCAGAATGCATAAGCCGAGGATCGACCCGGTCCC-CCCTGCGTGCTG-TCG
65 ACCGGTC-GGAGAGGCAAAATGCACAAGCCAAGGATCGACCCGGTCCCTCCCTACATGCTGCT-G
* * * *
19392764 ATCCTGTTGCCGCAACCCTTGGTCTGG-TCCAA
128 ATCCTGCTGCCACAACCCTCGGTCCGGCT-CAA
*
19392796 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
19392824 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 24, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
156 3 0.02
157 56 0.36
158 45 0.29
159 52 0.33
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAA
CCGGTCGGAGAGGCAAAATGCACAAGCCAAGGATCGACCCGGTCCCTCCCTACATGCTGCTGATC
CTGCTGCCACAACCCTCGGTCCGGCTCAA
Found at i:19392833 original size:26 final size:26
Alignment explanation
Indices: 19392797--19392849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19392787 CTGGTCCAAT
19392797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19392823 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19392849 C
1 C
19392850 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19393770 original size:26 final size:26
Alignment explanation
Indices: 19393732--19393782 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19393722 CTGGTCTGAT
19393732 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19393758 CTTAGACAT-GGAATGAACTCCATAT
1 CTTAGAC-TGGGAATGAACTCCATAT
19393783 ACCTCAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19394287 original size:26 final size:26
Alignment explanation
Indices: 19394236--19394288 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19394226 CTGGTCTGAT
**
19394236 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
19394262 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
19394288 C
1 C
19394289 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19394953 original size:24 final size:24
Alignment explanation
Indices: 19394921--19394972 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
19394911 AGCACCAGCA
19394921 CATGCCCGAGCCCAGCATGTGCAC
1 CATGCCCGAGCCCAGCATGTGCAC
19394945 CATGCCCGAGCCCAGCATGTGCAC
1 CATGCCCGAGCCCAGCATGTGCAC
19394969 CATG
1 CATG
19394973 TGCACATGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.21, C:0.40, G:0.25, T:0.13
Consensus pattern (24 bp):
CATGCCCGAGCCCAGCATGTGCAC
Found at i:19395664 original size:26 final size:26
Alignment explanation
Indices: 19395635--19395686 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19395625 TCTGGTCCGA
* *
19395635 TCTTATACTTGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
19395661 TCTTAGACATGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
19395687 GCGTAAGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Found at i:19395963 original size:159 final size:157
Alignment explanation
Indices: 19395661--19396079 Score: 387
Period size: 159 Copynumber: 2.6 Consensus size: 157
19395651 AACTCCGTAT
* * *
19395661 TCTTAGACATGGAATGAACTCCGTATGCGTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCGTGCGGGCGCACAG
* * *
19395726 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGGCCGATCCCCACTTATGGGCTGTCGATC
64 CCGGCCGGAGACGCAGAATGCGCAAGCCGGGGATCGGGCCGATCCCCACTTATGGGCTGTCGATC
* * * *
19395791 CTGCTGCCGCAACCCTCGGTCTGGTCT-GA
129 CCGCTGCCACAACCCTCGGTC-CGACTGGA
* *
19395820 TCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCAGAG
1 TCTTAGACT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGCGCACAG
* * * * * *
19395885 TCGGCCGGAGACGCATAATGCGCAAGCCGGGGATC-GGCTCGGT-TCC-CTTCTGCATGCTGTCG
64 CCGGCCGGAGACGCAGAATGCGCAAGCCGGGGATCGGGC-CGATCCCCACTTATG--GGCTGTCG
* * * *
19395947 GTCCCGTTGCCACAACCTTCGGTCCGACTGGG
126 ATCCCGCTGCCACAACCCTCGGTCCGACTGGA
* * * * * * * * *
19395979 GCTTAGATATGGAATGAACTCCCTCTGCCTAAGCCAACCCATGAAATGCGCATGCGGGCACTCAG
1 TCTTAGA-CTGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGCGCACAG
* * * * * *
19396044 CCGACCAGAGAGGCAGAATACGCAAGTCAGGGATCG
64 CCGGCCGGAGACGCAGAATGCGCAAGCCGGGGATCG
19396080 ACTCGGTCCC
Statistics
Matches: 211, Mismatches: 41, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 9 0.04
159 195 0.92
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (157 bp):
TCTTAGACTGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTGCGGGCGCACAGCC
GGCCGGAGACGCAGAATGCGCAAGCCGGGGATCGGGCCGATCCCCACTTATGGGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGACTGGA
Found at i:19397373 original size:158 final size:157
Alignment explanation
Indices: 19396889--19397545 Score: 571
Period size: 158 Copynumber: 4.2 Consensus size: 157
19396879 CTGTATGCTC
* * * * * *
19396889 AGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCTACAAAACGAGCGTGCAGGCGCTCAGTCG
1 AGACATGGAATGAACTCC-CTATGCCTAAGTCAACCCACGAAACG-GCGTGCGGGCACTCAGCCG
** ** ** * * **
19396953 GTCGGAGAGGCAGAATGCGCAAG-CCAGGGATCAGCCCTATCCCTCC-TGCGTGCTGTCGATCTT
64 ACCGGAGAGGCAGAATGCGC-AGTCTGGGGATTGGCCCTGTCCC-CCTTGCGTGCTGCCGATCCC
*** * * **
19397016 GCTGCTGTAACCCTTGATCCGATCT-GATCTT
127 GCTGCCACAACCCTCGGTCCGA-CTGGGGCTT
** * * * *
19397047 AGAC-TCAAAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCG
1 AGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACG-GCGTGCGGGCACTCAGCCG
* * * * * * * **
19397111 ATCGAAGAGGCATAATGCGCA-TGCTGAGGATCGG-CCTGTTTCCTCTCTGCGTGCTGCCGGCCC
64 ACCGGAGAGGCAGAATGCGCAGT-CTGGGGATTGGCCCTG-TCCCCCT-TGCGTGCTGCCGATCC
* * *
19397174 CGCTGCCACAACCCTCGGTCTGGCTGGGGCTC
126 CGCTGCCACAACCCTCGGTCCGACTGGGGCTT
* *
19397206 AGACATGGAATGAACTCCCTATGCCTAATTCAACCCACGAAACAGGCGTGCGGGCACTCAACCGA
1 AGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAAC-GGCGTGCGGGCACTCAGCCGA
*
19397271 CCGGAGAGGTAGAATGCGCAGTC-GGGGATTGGCCCCTGTCCCCCTTGCGTGCTGCCGATCCCGC
65 CCGGAGAGGCAGAATGCGCAGTCTGGGGATTGG-CCCTGTCCCCCTTGCGTGCTGCCGATCCCGC
19397335 TGCCACAACCCTCGGTCCGACTGGGGCTT
129 TGCCACAACCCTCGGTCCGACTGGGGCTT
* *
19397364 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGG
1 AGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAAC-GGCGTGCGGGCACTCAGCCGA
* * * * * *
19397429 CCAGAGAGGCAGAATGCGCAAG-CTGGGGATTGGCTCGGTCCCCCCTGCGTGCTACCGATCCTGC
65 CCGGAGAGGCAGAATGCGC-AGTCTGGGGATTGGCCCTGTCCCCCTTGCGTGCTGCCGATCCCGC
* * * **
19397493 TGTCGCAACCCTCGATCCGATCT-GATCTT
129 TGCCACAACCCTCGGTCCGA-CTGGGGCTT
*
19397522 AGAC-TGGGAATGAACTCCGTATGC
1 AGACAT-GGAATGAACTCCCTATGC
19397546 TTAGATTAGG
Statistics
Matches: 408, Mismatches: 74, Indels: 34
0.79 0.14 0.07
Matches are distributed among these distances:
157 7 0.02
158 276 0.68
159 118 0.29
160 7 0.02
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.19
Consensus pattern (157 bp):
AGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGCGTGCGGGCACTCAGCCGAC
CGGAGAGGCAGAATGCGCAGTCTGGGGATTGGCCCTGTCCCCCTTGCGTGCTGCCGATCCCGCTG
CCACAACCCTCGGTCCGACTGGGGCTT
Found at i:19397548 original size:26 final size:26
Alignment explanation
Indices: 19397519--19397574 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
19397509 CCGATCTGAT
19397519 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
* *
19397545 CTTAGATTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
19397571 CTTA
1 CTTA
19397575 ATTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:19398221 original size:155 final size:156
Alignment explanation
Indices: 19398060--19398418 Score: 352
Period size: 157 Copynumber: 2.3 Consensus size: 156
19398050 CCTGTTGCTG
* * *
19398060 AACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA-CCACGAAA
1 AACCCTCGATCCG-TCTGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA
* * * * *
19398124 CGAGCGTGCGGGCGTTGAGCGC-C-GGAG-AGCATAATGCATTAAGCCGGGGATCGGCTCGGTCC
65 CGAGCGTGCGGGCGCTCAGC-CACTGGAGAAGCAGAATGC-GTAAGCCGGGGATCGGCTCGATCC
*
19398186 CC-CCTATGTGCTGCCGGTCCCACTGCCAC
128 CCTCC-ATGTGCTGCCGATCCCACTGCCAC
* * ** ** *
19398215 AACCCTCGATCTGGCTAGGGCTTAGAAT-GGAATGAACTCCCTATACCTAAGCCAACCCACGAAA
1 AACCCTCGATCCGTCT-GATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA
* * * *
19398279 CGGGCGTTCGGGCGCTCAGCCAACTGGAGAAGCAGAATGCGTAAGTCGGGGATTGGCTCGATCCC
65 CGAGCGTGCGGGCGCTCAGCC-ACTGGAGAAGCAGAATGCGTAAGCCGGGGATCGGCTCGATCCC
* * *** * *
19398344 CTCCGTGTGCTGTCGATCCTGTTGTCGC
129 CTCCATGTGCTGCCGATCCCACTGCCAC
* *
19398372 AACCCTCGATTCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGC
1 AACCCTCGA-TCCGTCTGATCTTAGAATGGGAATGAACTCTGTATGC
19398419 TTAGACTGGG
Statistics
Matches: 160, Mismatches: 35, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
154 26 0.16
155 43 0.27
156 1 0.01
157 59 0.37
158 31 0.19
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (156 bp):
AACCCTCGATCCGTCTGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCACTGGAGAAGCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCT
CCATGTGCTGCCGATCCCACTGCCAC
Found at i:19398396 original size:157 final size:154
Alignment explanation
Indices: 19397970--19398411 Score: 346
Period size: 157 Copynumber: 2.8 Consensus size: 154
19397960 CCATTTGAAT
* * * * * * *
19397970 GAGCGTGCAGGCGCTCAGTCGGTCGGAGAGGTATACATGC-GTAAGCCGGGGAT-GCCTGGGT-C
1 GAGCGTGCGGGCGCTCAG-C-GCCGGAGA-GCAGA-ATGCAGTAAGCCGGGGATCGGCTCGATCC
** * * * * *
19398032 CCCCTGCGTGCTATCGATCCTGTTGCTG-AACCCTCGGTCCGATCTGATCTTAGACTGGGAATGA
62 CCCCTATGTGCTGTCGATCCTGTTGC-GCAACCCTCGATTCGGTCTGATCTTAGAATGGGAATGA
** * *
19398096 ACTCTGTATGCCTAAGTCAACCACGAAAC
126 ACTCCCTATACCTAAGCCAACCACGAAAC
* * * * *
19398125 GAGCGTGCGGGCGTTGAGCGCCGGAGAGCATAATGCATTAAGCCGGGGATCGGCTCGGTCCCCCC
1 GAGCGTGCGGGCGCTCAGCGCCGGAGAGCAGAATGCAGTAAGCCGGGGATCGGCTCGATCCCCCC
* * *** * **
19398190 TATGTGCTGCCGGTCCCACTGCCACAACCCTCGA-TCTGG-CTAGGGCTTAGAAT-GGAATGAAC
66 TATGTGCTGTCGATCCTGTTG-CGCAACCCTCGATTC-GGTCT-GATCTTAGAATGGGAATGAAC
19398252 TCCCTATACCTAAGCCAACCCACGAAAC
128 TCCCTATACCTAAGCCAA-CCACGAAAC
* * * *
19398280 GGGCGTTCGGGCGCTCAGC-CAACTGGAGAAGCAGAATGC-GTAAGTCGGGGATTGGCTCGATCC
1 GAGCGTGCGGGCGCTCAGCGC--C-GGAG-AGCAGAATGCAGTAAGCCGGGGATCGGCTCGATCC
* *
19398343 CCTCC-GTGTGCTGTCGATCCTGTTGTCGCAACCCTCGATTCGGTCTGATCTTAGATTGGGAATG
62 CC-CCTATGTGCTGTCGATCCTGTTG-CGCAACCCTCGATTCGGTCTGATCTTAGAATGGGAATG
19398407 AACTC
125 AACTC
19398412 TGTATGCTTA
Statistics
Matches: 224, Mismatches: 47, Indels: 29
0.75 0.16 0.10
Matches are distributed among these distances:
151 4 0.02
152 16 0.07
153 13 0.06
154 46 0.21
155 57 0.25
156 1 0.00
157 61 0.27
158 26 0.12
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (154 bp):
GAGCGTGCGGGCGCTCAGCGCCGGAGAGCAGAATGCAGTAAGCCGGGGATCGGCTCGATCCCCCC
TATGTGCTGTCGATCCTGTTGCGCAACCCTCGATTCGGTCTGATCTTAGAATGGGAATGAACTCC
CTATACCTAAGCCAACCACGAAAC
Found at i:19398421 original size:26 final size:26
Alignment explanation
Indices: 19398392--19398444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19398382 TCGGTCTGAT
* *
19398392 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19398418 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19398444 C
1 C
19398445 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19404997 original size:26 final size:26
Alignment explanation
Indices: 19404959--19405011 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19404949 GGCTCAAAAT
19404959 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19404985 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19405011 C
1 C
19405012 CTAAGCTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19405336 original size:26 final size:26
Alignment explanation
Indices: 19405300--19405355 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
19405290 CTGATCTGAT
*
19405300 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* * *
19405326 CTTAGATTGGGGATGAACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
19405352 CTTA
1 CTTA
19405356 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:19406200 original size:158 final size:157
Alignment explanation
Indices: 19405706--19406525 Score: 445
Period size: 159 Copynumber: 5.2 Consensus size: 157
19405696 ACTCCGTATG
* * * * * *
19405706 CTTAGATATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCGTACAGGCGCTCAAC
1 CTTAGATA-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAAC
* * *** * * * * * *
19405771 CGGCCAGAGAGGCAGAATGTACAAGCCGGGGATCGGCCTGATCCCCCCCAGCGTGCTATCGATCC
65 CGACAAGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCGAT-CCCTCCTGCGTGCTATCGATCC
* * * *
19405836 TGCTG-CTGCAACCATCGGTTCGGTCCGAT
129 TGCTGTC-GCAACCCTCGGTCCGATTCGAT
** * * * * * * ** * *
19405865 CTTAGACT-GAGAATGAACTCTGTATGCATAAGTCAACCTATGAAAAGAGTGTGCGGGTGCTGAG
1 CTTAGA-TAG-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAA
* * ** * * * * * * *
19405929 CCGGC-CGAAGAGGCCTAATGTGCAAG-CCAGGGATCAACCC-AGTCCCCCTCTACGTGCTACCA
64 CCGACAAG-AGAGGCAGAATGCGTAAGTCGA-GGATCAGCCCGA-TCCCTC-CTGCGTGCTATC-
** * * * * * **
19405991 GA-CCCACTGCCACAACCCTCGGT-CTAGCTGGGG
124 GATCCTGCTGTCGCAACCCTCGGTCCGA-TTCGAT
* *
19406024 CTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAAC
1 CTTAGATA-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAAC
* * * *
19406089 CGACAAGAGAGGTAGAATGCGTAAGTCGAGGATCAGCCTGATCCCTCCTGCGTGCTACCGATCAT
65 CGACAAGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCT
*
19406154 GCTGTCGCAACCCTCGGTCCGATTTGAT
130 GCTGTCGCAACCCTCGGTCCGATTCGAT
* * * * * * * *
19406182 CTTAGACTACGAATGAACTTCGTATGCATAAGTCTACCCATGAAACGAGCGTGCAGGCACTGACC
1 CTTAGA-TAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAAC
* * * * * * * * *
19406247 CAACCAA-AGAGGCATAATGCGTAAGTCAAGGATTAGCCCGGTCCCCCTCTGTGTGCTGTCGGTC
65 CGA-CAAGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCGATCCCTC-CTGCGTGCTATCGATC
* * * * * * ** * **
19406311 CCGCTGCCACAACCCTTGTTTCGGCTGGGG
128 CTGCTGTCGCAACCCTCGGTCCGATTCGAT
* * * * * * *
19406341 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGAGCGGGCACTTAGC
1 CTTAGATA-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAAC
* * * * * *
19406406 TTG-CCAGACAGGCAGAATGC-TCAAGCCGGGGATCAGCCCGATCCCTCATGCGTGCTATCGATC
65 -CGACAAGAGAGGCAGAATGCGT-AAGTCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATC
* * *
19406469 CTACTGTCGTAACCCTCGGTCTGATTCGAT
128 CTGCTGTCGCAACCCTCGGTCCGATTCGAT
* *
19406499 GTTAGATTAGGAATGAACTCCGTATGC
1 CTTAGA-TAGGAATGAACTCCCTATGC
19406526 TTAGACTGGG
Statistics
Matches: 486, Mismatches: 151, Indels: 49
0.71 0.22 0.07
Matches are distributed among these distances:
157 2 0.00
158 181 0.37
159 294 0.60
160 9 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGATAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACC
GACAAGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCTG
CTGTCGCAACCCTCGGTCCGATTCGAT
Found at i:19406293 original size:317 final size:314
Alignment explanation
Indices: 19405705--19406525 Score: 885
Period size: 317 Copynumber: 2.6 Consensus size: 314
19405695 AACTCCGTAT
* * * * * *
19405705 GCTTAGATATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCGTACAGGCGCTCAA
1 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
* * *
19405770 CCGGCCAGAGAGGCAGAATG-TACAAGCCGGGGATCGGCCTGATCCCCCCCAGCGTGCTATCGAT
66 CC-GCCAGAGAGGCAGAATGCT--AAGCCGGGGATCAGCCTGAT-CCCTCCTGCGTGCTATCGAT
* * * *
19405834 CCTGCTG-CTGCAACCATCGGTTCGGTCCGATCTTAGACTGAGAATGAAC-TCTGTATGCATAAG
127 CCTGCTGTC-GCAACCCTCGGTCCGATTCGATCTTAGACT-AGAATGAACTTC-GTATGCATAAG
* * * ** * ** * * * *
19405897 TCAACCTATGAAAAGAGTGTGCGGGTGCTGAGCCGGCCGAAGAGGCCTAATGTGCAAGCCAGGGA
189 TCAACCCATGAAAAGAGCGTGCAGGCACTGACCCAACCAAAGAGGCATAATGCGCAAGCCAAGGA
19405962 TCAACCCAGTCCCCCTCTACGTGCTACCAGACCCACTGCCACAACCCTCGGTCT-AGCTGGG
254 TCAACCCAGTCCCCCTCTACGTGCTACCAGACCCACTGCCACAACCCT-GGTCTCAGCTGGG
* * *
19406023 GCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAA
1 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
* * * * * *
19406088 CCGACAAGAGAGGTAGAATGCGTAAGTCGAGGATCAGCCTGATCCCTCCTGCGTGCTACCGATCA
66 CCG-CCAGAGAGGCAGAATGC-TAAGCCGGGGATCAGCCTGATCCCTCCTGCGTGCTATCGATCC
* *
19406153 TGCTGTCGCAACCCTCGGTCCGATTTGATCTTAGACTACGAATGAACTTCGTATGCATAAGTCTA
129 TGCTGTCGCAACCCTCGGTCCGATTCGATCTTAGACTA-GAATGAACTTCGTATGCATAAGTCAA
* * * * *
19406218 CCCATGAAACGAGCGTGCAGGCACTGACCCAACCAAAGAGGCATAATGCGTAAGTCAAGGATTAG
193 CCCATGAAAAGAGCGTGCAGGCACTGACCCAACCAAAGAGGCATAATGCGCAAGCCAAGGATCAA
* ** ** * * * * * *
19406283 CCCGGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTTGTTTCGGCTGGG
258 CCCAGTCCCCCTCTACGTGCTACCAGACCCACTGCCACAACCCTGGTCTCAGCTGGG
* * * * *
19406340 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGAGCGGGCACTTAG
1 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
* * * *
19406405 CTTGCCAGACAGGCAGAATGCTCAAGCCGGGGATCAGCCCGATCCCTCATGCGTGCTATCGATCC
66 C-CGCCAGAGAGGCAGAATGCT-AAGCCGGGGATCAGCCTGATCCCTCCTGCGTGCTATCGATCC
* * * * * *
19406470 TACTGTCGTAACCCTCGGTCTGATTCGATGTTAGATTAGGAATGAACTCCGTATGC
129 TGCTGTCGCAACCCTCGGTCCGATTCGATCTTAGACTA-GAATGAACTTCGTATGC
19406526 TTAGACTGGG
Statistics
Matches: 417, Mismatches: 77, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
316 5 0.01
317 317 0.76
318 94 0.23
320 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (314 bp):
GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
CCGCCAGAGAGGCAGAATGCTAAGCCGGGGATCAGCCTGATCCCTCCTGCGTGCTATCGATCCTG
CTGTCGCAACCCTCGGTCCGATTCGATCTTAGACTAGAATGAACTTCGTATGCATAAGTCAACCC
ATGAAAAGAGCGTGCAGGCACTGACCCAACCAAAGAGGCATAATGCGCAAGCCAAGGATCAACCC
AGTCCCCCTCTACGTGCTACCAGACCCACTGCCACAACCCTGGTCTCAGCTGGG
Found at i:19406401 original size:159 final size:158
Alignment explanation
Indices: 19405971--19406385 Score: 404
Period size: 158 Copynumber: 2.6 Consensus size: 158
19405961 ATCAACCCAG
* * * ** *
19405971 TCCCCCTCTACGTGCTACCAGA-CCCACTGCCACAACCCTCGGTCTAGCTGGGGCTTAGACATGG
1 TCCCCC-CTGCGTGCTACC-GATCACGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAAATGG
* *
19406035 AATGAACTCCCTATGCCGAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACCGACAAGAGAG
64 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACCAACAAGAGAG
* * *
19406100 GTAGAATGCGTAAGTCGAGGATCAGCCTGA
129 GCAGAATGCGTAAGTCAAGGATCAGCCCGA
* * * * ** * ** * *
19406130 TCCCTCCTGCGTGCTACCGATCATGCTGTCGCAACCCTCGGTCCGATTTGATCTTAG-ACTACGA
1 TCCCCCCTGCGTGCTACCGATCACGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAAAT-GGA
* * * * * * *
19406194 ATGAACTTCGTATGCATAAGTCTACCCATGAAACGAGCGTGCAGGCACTGACCCAACCAA-AGAG
65 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACCAA-CAAGAGAG
* * *
19406258 GCATAATGCGTAAGTCAAGGATTAGCCCGG
129 GCAGAATGCGTAAGTCAAGGATCAGCCCGA
* ** * * * * *
19406288 TCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTTGTTTCGGCTGGGGCTTAGAAATGGA
1 TCCCCC-CTGCGTGCTACCGATCACGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAAATGGA
19406353 ATGAACTCCCTATGCCTAAGCCAACCCATGAAA
65 ATGAACTCCCTATGCCTAAGCCAACCCATGAAA
19406386 TGGGCGAGCG
Statistics
Matches: 195, Mismatches: 56, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
157 3 0.02
158 117 0.60
159 73 0.37
160 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (158 bp):
TCCCCCCTGCGTGCTACCGATCACGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAAATGGAA
TGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACCAACAAGAGAGGC
AGAATGCGTAAGTCAAGGATCAGCCCGA
Found at i:19406743 original size:159 final size:158
Alignment explanation
Indices: 19406524--19406818 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 158
19406514 AACTCCGTAT
* *
19406524 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCT-AA
** * * * *
19406589 -CCGGTAGAAGAGGCATAATGCGTAAGTCAGGGATCAG-CCTGGTCCCCCTCTGTATGCTGTCGA
65 GCCAATAGAAGAGGCAGAATGCGCAAGTCAGGGATCAGTCC-GGTCCCCC-CTATATGCTGCCGA
19406652 TCCTGCTACCATAACCCTCAGTCCACCTGGG
128 TCCTGCTACCATAACCCTCAGTCCACCTGGG
* * *
19406683 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTAA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTAA
* * * * *
19406747 GCCAATCGAAGATGCAGAATGTGCAAGTCAGGGATCGGTCCGGTCCCCCCTATGTGCTGCCGATC
65 GCCAATAGAAGAGGCAGAATGCGCAAGTCAGGGATCAGTCCGGTCCCCCCTATATGCTGCCGATC
19406812 CTGCTAC
130 CTGCTAC
19406819 TGGTCCTGCT
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
158 22 0.19
159 92 0.79
160 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTAAG
CCAATAGAAGAGGCAGAATGCGCAAGTCAGGGATCAGTCCGGTCCCCCCTATATGCTGCCGATCC
TGCTACCATAACCCTCAGTCCACCTGGG
Found at i:19406813 original size:343 final size:349
Alignment explanation
Indices: 19406192--19406933 Score: 803
Period size: 343 Copynumber: 2.1 Consensus size: 349
19406182 CTTAGACTAC
* * *
19406192 GAATGAACTTCGTATGCATAAGTCTACCCATGAAACGAGCGTGCAGGCACTGACCCAACCAAAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGG--CTGACCCAACCAAAGA
* * * *
19406257 GGCATAATGCGTAAGTCAAGGATTAGCCCGGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACA
64 GGCATAATGCGTAAGTCAAGGATCAGCCCGGTCCCCCTCTGTATGCTGTCGATCCCGCTACCACA
* * ** *
19406322 ACCCTTGTTTCGGCTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT
129 ACCCTAGTTCCACCTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
* * * * *
19406387 GGGCGAGCGGGCACTTAGCTTGCCAGACAGGCAGAATGCTCAAGCCGGGGATCAGCCCGATCCCT
194 GAGCGAGCGGGCACTAAGCATGCCAGACAGGCAGAATGCTCAAGCCAGGGATCAGCCCGATCCCC
* * * * * *
19406452 CATGCGTGCTATCGAT-C-CTACT-G-T-C-G-T-AACCCTCGGTCTGATTCGATGTTAGATTAG
259 CATACGTGCTACCGATCCGCTACTGGCTGCTGCTCAACCCTCGGTCCGATCCAATCTTAGATTAG
19406509 GAATGAACTCCGTATGCTTAGAC-TGG
324 GAATGAACTCCGTATGCTTAGACAT-G
* *
19406535 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGG-TG-CTCAACCGGTAGAA
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCTGACCCAACC---A-AA
* * *
19406598 GAGGCATAATGCGTAAGTCAGGGATCAGCCTGGTCCCCCTCTGTATGCTGTCGATCCTGCTACCA
62 GAGGCATAATGCGTAAGTCAAGGATCAGCCCGGTCCCCCTCTGTATGCTGTCGATCCCGCTACCA
* * **
19406663 TAACCCTCAG-TCCACCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGA
127 CAACCCT-AGTTCCACCTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * ** * * * * * *
19406727 AACGAGTGTGCGGGTGCTAAGCCAAT-CGA-AGATGCAGAATG-TGCAAGTCAGGGATCGGTCCG
191 AACGAGCGAGCGGGCACTAAG-C-ATGCCAGACAGGCAGAATGCT-CAAGCCAGGGATCAGCCCG
* * * *
19406789 GTCCCCCCTATGTGCTGCCGATCCTGCTACTGGTCCTGCTGCTGCAACCCTCGGTCCGATCCAAT
253 ATCCCCCATACGTGCTACCGATCC-GCTACTGG--CTGCTGCT-CAACCCTCGGTCCGATCCAAT
*
19406854 CTTAGATTGGGAATGAACTCCGTATGCTTAGACATG
314 CTTAGATTAGGAATGAACTCCGTATGCTTAGACATG
* *
19406890 GAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCGTGC
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
19406934 GTGCGGGCGC
Statistics
Matches: 328, Mismatches: 50, Indels: 30
0.80 0.12 0.07
Matches are distributed among these distances:
339 6 0.02
340 2 0.01
342 2 0.01
343 211 0.64
344 5 0.02
345 1 0.00
346 5 0.02
347 1 0.00
350 1 0.00
351 1 0.00
352 1 0.00
353 1 0.00
355 90 0.27
356 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (349 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCTGACCCAACCAAAGAGG
CATAATGCGTAAGTCAAGGATCAGCCCGGTCCCCCTCTGTATGCTGTCGATCCCGCTACCACAAC
CCTAGTTCCACCTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA
GCGAGCGGGCACTAAGCATGCCAGACAGGCAGAATGCTCAAGCCAGGGATCAGCCCGATCCCCCA
TACGTGCTACCGATCCGCTACTGGCTGCTGCTCAACCCTCGGTCCGATCCAATCTTAGATTAGGA
ATGAACTCCGTATGCTTAGACATG
Found at i:19411118 original size:26 final size:26
Alignment explanation
Indices: 19411080--19411132 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19411070 GGCTCAAACT
19411080 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19411106 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
19411132 C
1 C
19411133 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19411459 original size:26 final size:27
Alignment explanation
Indices: 19411423--19411476 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
19411413 CTGGTCCAAT
19411423 CTTAGACTGGGAAT-GAACTCCGTATG
1 CTTAGACTGGGAATGGAACTCCGTATG
* *
19411449 CTTAGACTGGGGATGGAACTCTGTATG
1 CTTAGACTGGGAATGGAACTCCGTATG
19411476 C
1 C
19411477 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGGAACTCCGTATG
Found at i:19413567 original size:26 final size:26
Alignment explanation
Indices: 19413529--19413584 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
19413519 GGCTCAAAAT
*
19413529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
19413555 CTTAGACAT-GGAATAAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
19413581 CTTA
1 CTTA
19413585 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19414057 original size:26 final size:26
Alignment explanation
Indices: 19414028--19414080 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19414018 CCGGTCCGAT
19414028 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
19414054 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19414080 C
1 C
19414081 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19414445 original size:26 final size:26
Alignment explanation
Indices: 19414407--19414458 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19414397 TCTGGTCCGA
* * *
19414407 TCTTATACTTGGAATGAACTTCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
19414433 TCTTAGACATGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
19414459 GCGTAAGCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Done.