Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 178 of 402
Found at i:19414838 original size:159 final size:156
Alignment explanation
Indices: 19414434--19414860 Score: 396
Period size: 159 Copynumber: 2.7 Consensus size: 156
19414424 ACTTCGTATT
* * *
19414434 CTTAGACATGGAATGAACTCCGTATGCGTAAGCAAACCCACGAAATGAGCGTGCGGGCTCAGCC-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCTCAGCCG
* * ** * *
19414498 AGTCGGAGAGGTAGAATGCGCAAGCCGGGAATCGGGTCGATCCCCTCTTATGGGCTGTCGATCCT
66 A-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACCGATCCCCTCTCAT-GGCTGTCGATCCC
* * * *
19414563 GCTGCCGCAACCCTCGGTCTAGTCTGAT
129 ACTGCCACAACCCTCGGTCTAGACTGAG
* * * *
19414591 CTTAGAC-TGGGAATGAACTCTGTTTGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC-GG-GCTCAG
* * * * * * *
19414655 TCGGTCGGAGACGCATAATGCGCAAGCCGGGGATCGGACCGGTTCCTCTCTGCAT-GCTGTCGGT
63 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACC-GATCCCCTCT-CATGGCTGTCGAT
* * *
19414719 CCCACTGCCACAACCTTCGGTC-CGACTGGGG
126 CCCACTGCCACAACCCTCGGTCTAGACT-GAG
* * * *
19414750 CTTAGACATGGAATGAACTCCCTCTGCCTAAGCCAACCCATGAAATGCGCATGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGG--CTCAGC
* * * * *
19414815 CGACCAGAGAGGCAGAATACGCAAGTCAGGGATC-GACTCGATCCCC
64 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGAC-CGATCCCC
19414861 CCTGCGTGCT
Statistics
Matches: 214, Mismatches: 45, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 47 0.22
158 15 0.07
159 140 0.65
160 9 0.04
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCTCAGCCG
ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGACCGATCCCCTCTCATGGCTGTCGATCCCAC
TGCCACAACCCTCGGTCTAGACTGAG
Found at i:19416007 original size:159 final size:156
Alignment explanation
Indices: 19415653--19416278 Score: 561
Period size: 159 Copynumber: 3.9 Consensus size: 156
19415643 AACTCCGTAT
* *
19415653 GCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCTACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
19415717 GTCGGTCGGAGAGGCAAAATGCGCAAGC-CAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
65 GCCGATCGGAGAGGCAAAATGCGCAAGCTGA-GGATCGGCCTG-TCCCCTCTGCGTGCTGCCGA-
* * ** * *
19415781 CTTGCTACCGTAACCCT-TGATCTGATCT-GA
127 CCTGCTGCCACAACCCTCAG-TCTGA-CTGGG
* ** * * * *
19415811 TCTTAGAC-TCAAAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
19415875 GCCGATCGAAAAGGCATAATGCGCATGCTGAGGATCGGCCTGTTCCCTCTCTGCGTGCTGCCGGC
65 GCCGATCGGAGAGGCAAAATGCGCAAGCTGAGGATCGGCCTG-TCCC-CTCTGCGTGCTGCCGAC
*
19415940 CTCGCTGCCACAACCCTCAGTCTGGCTGGG
128 CT-GCTGCCACAACCCTCAGTCTGACTGGG
** * *
19415970 GCTTAGACATGGAATGAACTCCCTATGCCTAATTCAACCCACAAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * * * *
19416034 ACCGACCGGAGAGGTAGAATGCGCAAG-TCGGGGATCGACCCCTGTCCCC-CTTGCGTGCTGCCG
65 GCCGATCGGAGAGGCAAAATGCGCAAGCT-GAGGATCG--GCCTGTCCCCTC-TGCGTGCTGCCG
* *
19416097 ATCCTGCTGCCACAACCCTCGGTCCGACTGGG
126 A-CCTGCTGCCACAACCCTCAGTCTGACTGGG
* *
19416129 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
19416194 CCGA-CTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATGCCCC-CTGCGTGCTGCCGAT
66 CCGATC-GGAGAGGCAAAATGCGCAAGCTGAGGATCGGCCTG-T-CCCCTCTGCGTGCTGCCGA-
* *
19416257 CCTACTGCCGCAACCCTCAGTC
127 CCTGCTGCCACAACCCTCAGTC
19416279 CGGTCTGATC
Statistics
Matches: 384, Mismatches: 65, Indels: 38
0.79 0.13 0.08
Matches are distributed among these distances:
157 4 0.01
158 130 0.34
159 237 0.62
160 9 0.02
161 4 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAAAATGCGCAAGCTGAGGATCGGCCTGTCCCCTCTGCGTGCTGCCGACCTG
CTGCCACAACCCTCAGTCTGACTGGG
Found at i:19416317 original size:26 final size:26
Alignment explanation
Indices: 19416288--19416340 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19416278 CCGGTCTGAT
19416288 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
19416314 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19416340 C
1 C
19416341 CTAATTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19416704 original size:26 final size:26
Alignment explanation
Indices: 19416668--19416720 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19416658 CTGATCTGAT
*
19416668 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCATATG
19416694 CTTAGACACGGAATGAACTCCATATG
1 CTTAGACACGGAATGAACTCCATATG
19416720 C
1 C
19416721 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCATATG
Found at i:19416994 original size:158 final size:159
Alignment explanation
Indices: 19416694--19417194 Score: 564
Period size: 158 Copynumber: 3.2 Consensus size: 159
19416684 ACTCCGTATG
** * * * *
19416694 CTTAGACACGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
19416759 CGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATTGGC-CTGGTCCCCC-CTGCGTGCTATCGATC
66 CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTC-GGTCCCCCTCTGCGTGCTGTCGATC
* * *
19416822 CTGTTGCTGTAACCCTCGGTCCGGTCTGAT
130 CTGTTGCCGCAACCCTCGATCCGGTCTGAT
* * * * *
19416852 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19416916 CGGCCGGAGAGGCATAATGCATAAGCCGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGGTCC
66 CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCCCCCTCTGCGTGCTGTCGATCC
*** * * **
19416981 CACTGCCACAACCCTCGATCTGG-CTAGGG
131 TGTTGCCGCAACCCTCGATCCGGTCT-GAT
* * * *
19417010 CTTAGACAT-GGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCGTTCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * *
19417074 CCAACCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCTCGGTCCCCTTC-GCGTGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCCCCCTCTGCGTGCTGTCGATC
19417138 CTGTTGCCGCAACCCTCGATCCGGTCTGAT
130 CTGTTGCCGCAACCCTCGATCCGGTCTGAT
* *
19417168 CTTAGATTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
19417195 TTAGACTGAG
Statistics
Matches: 275, Mismatches: 61, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 65 0.24
158 143 0.52
159 67 0.24
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCCCCCTCTGCGTGCTGTCGATCC
TGTTGCCGCAACCCTCGATCCGGTCTGAT
Found at i:19423773 original size:26 final size:26
Alignment explanation
Indices: 19423735--19423787 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19423725 GGCTCAAAAT
19423735 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19423761 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19423787 C
1 C
19423788 CTAAGCTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19424102 original size:26 final size:26
Alignment explanation
Indices: 19424073--19424125 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19424063 CCGGTTTGAT
* *
19424073 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
19424099 CTTAGACTGGGGATGAACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
19424125 C
1 C
19424126 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:19424491 original size:26 final size:26
Alignment explanation
Indices: 19424454--19424505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19424444 CGGTCTGATG
19424454 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
19424480 TTAGA-TATGGAATGAACTCCGTATGC
1 TTAGACTA-GGAATGAACTCCGTATGC
19424506 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:19424833 original size:159 final size:158
Alignment explanation
Indices: 19424478--19424923 Score: 456
Period size: 159 Copynumber: 2.8 Consensus size: 158
19424468 AACTCCGTAT
* * *
19424478 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
* *
19424543 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCC
66 CCAGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTACCGATCC
* * **
19424608 TACTGCCGCAACCATCGGTTCGGTCTGA
131 CACTGCCACAACCATCAATTCGGTCTGA
* * * * * *
19424636 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCA
* ** * *
19424700 GCCAGCC-GAAGAGGCCTAATGCGCAAGCCGGGGATC-AGCCT-AGTCCCCCTCTGCGTGCTGCC
65 ACCAGCCAG-AGAGGCAGAATGCACAAGCCGGGGATCGA-CCTGA-TCCCCC-CTGCGTGCTACC
* * *
19424762 GGTCCCACTGCCACAACCCTCAA-TCTGG-CTGGG
126 GATCCCACTGCCACAACCATCAATTC-GGTCT-GA
* * * *
19424795 GCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAATGAGCGTGTAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
* * * * * * * *
19424860 CC-GACAAGAGACGTAGAATGCATAAGTCGGGGATCGGCCTGATCCCTCCTGCGTGCTGCCGATC
66 CCAG-CCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTACCGATC
19424924 ATGCTGTCGT
Statistics
Matches: 231, Mismatches: 45, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.02
158 111 0.48
159 113 0.49
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
CCAGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTACCGATCC
CACTGCCACAACCATCAATTCGGTCTGA
Found at i:19424980 original size:158 final size:157
Alignment explanation
Indices: 19424487--19424980 Score: 521
Period size: 158 Copynumber: 3.1 Consensus size: 157
19424477 TGCTTAGATA
* * * *
19424487 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCGGCCAGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAACCGACAAGA
* * * **
19424552 GAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCCTACTGCCGC
66 GACGTAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGCCGATCCTACTGCCGC
*
19424617 AACCATCGGT-TCGGTCTGATCTTAGAC
131 AACCCTCGGTCT-GGTCTGATCTTAGAC
* * * * * * *
19424644 TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCAGGTGCTGAGCCAGCCGA
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAACC-GAC-A
* * * * * *
19424709 AGAGGCCT--AATGCGCAAGCCGGGGATCAGCCT-AGTCCCCCTCTGCGTGCTGCCGGTCCCACT
63 AGAGACGTAGAATGCACAAGCCGGGGATCGGCCTGA-TCCCCC-CTGCGTGCTGCCGATCCTACT
* ** **
19424771 GCCACAACCCTCAATCTGG-CTGGGGCTTAGAC
126 GCCGCAACCCTCGGTCTGGTCT-GATCTTAGAC
* * * *
19424803 ATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAATGAGCGTGTAGGTGCTCAACCGACAAG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAACCGACAAG
* * * * * *
19424868 AGACGTAGAATGCATAAGTCGGGGATCGGCCTGATCCCTCCTGCGTGCTGCCGATCATGCTGTCG
65 AGACGTAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGCCGATCCTACTGCCG
*
19424933 TAACCCTCGGTCTGGTCTGATCTTAGAC
130 CAACCCTCGGTCTGGTCTGATCTTAGAC
19424961 TGAGAATGAACTCCGTATGC
1 TG-GAATGAACTCCGTATGC
19424981 TTAGACTAGG
Statistics
Matches: 267, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 11 0.04
158 135 0.51
159 114 0.43
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAACCGACAAGA
GACGTAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGCCGATCCTACTGCCGC
AACCCTCGGTCTGGTCTGATCTTAGAC
Found at i:19425405 original size:499 final size:499
Alignment explanation
Indices: 19424433--19425691 Score: 1487
Period size: 499 Copynumber: 2.5 Consensus size: 499
19424423 CTGTTGCCAC
* * *
19424433 AACCCTCAGTTCGGTCTGATGTTAGACT-AGGAATGAACTCCGTATGCTTAGA-TATGGAATGAA
1 AACCCTCGGTCCGGTCTGATGTTAGACTGA-GAATGAACTCCGTATGCTTAGACTA-GGGATGAA
* *
19424496 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCGGCCAGAGAGGCAGAA
64 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGAGGCAGAA
* * * * * * * *
19424561 TGCACAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCATCGG
129 TGCGCAAGTCGGGGATCAACCCGGTCCCCCTTGCATGCTGTCGATCCTACTGCCGCAACC-TCGG
* *
19424626 T-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTG
193 TCT-GATTTGATCTTAGACT-GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTG
** * * ** *
19424690 CAGGTGCTGAGCCAGCCGAAGAGGCCTAATGCGCAAGCCGGGGATCAGCCTAGTCCCCCTCTGCG
256 CAGGCACTGAGCCAGCCAAAGAGGCCAAATGCGCAAGCCAAGGATCAGCCCAGTCCCCCTCTGCG
* *
19424755 TGCTGCCGGTCCCACTGCCACAACCCTCAATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
321 TGCTGCCGGTCCCACTGCCACAACCCTCAATCTGACTGGGGCTTAGAAATGGAATGAACTCCCTA
* * ** * *
19424820 TGCCGAAGCCAACCCACGAAATGAGCGTGTAGGTGCTCAACCGACAAGAGACGTAGAATGCATAA
386 TGCCGAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACAAGACACGCAGAATGCATAA
* * * *
19424885 GTCGGGGATCGGCCTGATCCCTCCTGCGTGCTGCCGATCATGCTGTCGT
451 GCCGGGGATCAGCCTGATCCCTCCTGCGTGCTACCGATCATACTGTCGT
* *
19424934 AACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACT
1 AACCCTCGGTCCGGTCTGATGTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACT
* * * * * *
19424999 CCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGGTCAACCGACCAGAGAGGCAGGACG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGAGGCAGAATG
* * *
19425064 TGCAAGTCGGGGATCAACCCGGT-CCCCTTGCATGCTGTCGATCTTACTGTCGCAACGCTCGGTC
131 CGCAAGTCGGGGATCAACCCGGTCCCCCTTGCATGCTGTCGATCCTACTGCCGCAAC-CTCGGTC
19425128 TGATTTGATCTTAGACTGTGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCAG
195 TGATTTGATCTTAGACTG-GAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCAG
* * * * *
19425193 GCACTGAGCCAGCCAAAGAGG-CAAATGCGTAAGTCAAGGATCAGCCCGGTCCCCCTTTGTGTGC
259 GCACTGAGCCAGCCAAAGAGGCCAAATGCGCAAGCCAAGGATCAGCCCAGTCCCCCTCTGCGTGC
* * ** *
19425257 TGTCGGTCCCGCTGCCACAACCCT-TGTTTCGACTGGGGCTTAGAAATGGAATGAACTCCCTATG
324 TGCCGGTCCCACTGCCACAACCCTCAATCT-GACTGGGGCTTAGAAATGGAATGAACTCCCTATG
* * * * * * *
19425321 CCGAAGCCAACCCACGAAACGGGCGTGCGGGCACTTAGCTTG-CCAGACAGGCAGAATGC-TCAA
388 CCGAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAAC-CGACAAGACACGCAGAATGCAT-AA
* *
19425384 GCCGGGGATCAG-CTCGATCCCTCCTGCGTGCTATCGATCCTACTGTCGT
451 GCCGGGGATCAGCCT-GATCCCTCCTGCGTGCTACCGATCATACTGTCGT
* * * * * * *
19425433 AACCCTCGGTCCGATCCGATGTTAGATTGGGAATGAACTCCGTATCCTTAAACTGGGGATGAACT
1 AACCCTCGGTCCGGTCTGATGTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACT
* * * *
19425498 CCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGTGCTCAACCGGCC-GAAGAGGCATAAT
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAG-AGAGGCAGAAT
* * * * * * *
19425562 GCGTAAGTCAGGGATCAGCCCGGTCCCCCTCTGTATGCTGTCAATCCTACTGCCACAACCCTCAG
130 GCGCAAGTCGGGGATCAACCCGGTCCCCCT-TGCATGCTGTCGATCCTACTGCCGCAA-CCTCGG
* * * ** * * *
19425627 TC-CAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTG
193 TCTGA-TTTGATCTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTG
19425691 C
256 C
19425692 GGGTGCTAAG
Statistics
Matches: 642, Mismatches: 101, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
498 6 0.01
499 303 0.47
500 118 0.18
501 209 0.33
502 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (499 bp):
AACCCTCGGTCCGGTCTGATGTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGAGGCAGAATG
CGCAAGTCGGGGATCAACCCGGTCCCCCTTGCATGCTGTCGATCCTACTGCCGCAACCTCGGTCT
GATTTGATCTTAGACTGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCAGGC
ACTGAGCCAGCCAAAGAGGCCAAATGCGCAAGCCAAGGATCAGCCCAGTCCCCCTCTGCGTGCTG
CCGGTCCCACTGCCACAACCCTCAATCTGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCG
AAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACAAGACACGCAGAATGCATAAGCCGG
GGATCAGCCTGATCCCTCCTGCGTGCTACCGATCATACTGTCGT
Found at i:19426299 original size:860 final size:842
Alignment explanation
Indices: 19424637--19426437 Score: 1972
Period size: 860 Copynumber: 2.1 Consensus size: 842
19424627 TCGGTCTGAT
* * * * *
19424637 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCAGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCAGGTGCTCAAC
* * * * **
19424702 CAGCCGAAGAGGCCTAATGCGCAAGCCGGGGATCAGCCTAGTCCCCCTCTGCGTGCTGCCGGTCC
66 CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCAATCC
**
19424767 CACTGCCACAACCCTCAATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAA
131 CACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAA
* * * * * *
19424832 CCCACGAAATGAGCGTGTAGGTGCTCAACCGACAAGAGACGTAGAATGCATAAGTCGGGGATCGG
196 CCCACGAAACGAGCGTGCAGGTGCTCAACCAACAAGAGACGCAAAATGCACAAGTCGGGGATCGG
* * * * **
19424897 CCTGATCCCTCCTGCGTGCTGCCGATCATGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACT
261 CCTGATCCCCCCTACGTGCTGCCGATCATGCTGTCGTAACCCTCGGTCCGATCCAATCTTAGACT
* * *
19424962 GAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAGGTCAACCCACGAAACG
326 GAGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
* * ** *
19425027 AGCGTGCGGGCGGTCAACCGACCAGAGAGGCAGGACGTGCAAGTCGGGGATCAACCCGGTCCCCT
391 AGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAACGCCCAAGTCGGGGATCAACCCGGTCCCCC
* * * * * * ** *
19425092 TGCATGCTGTCGATCTTACTGTCGCAACGCTCGGTCTGATTTGATCTTAGACTGTGAATGAACTC
456 TACATGCTGTCGATCCTACTGTCACAACCCTCAGTCAGATCCGATCTTAGACTGGGAATGAACTC
* * *
19425157 CGTATGCATAAGTCAACCCATGAAACGAGTGTGCAGGCACTGAGCCAGCCAAAGAGGCAAATGCG
521 CGTATGCATAAGTCAACCCATCAAACAAATGTGCAGGCACTGAGCCAGCCAAAGAGGCAAATGCG
* * * * * * *
19425222 TAAGTCAAGGATCAGCCCGGTCCCCCTTTGTGTGCTGTCGGTCCCGCTGCCACAACCCTTGTTTC
586 TAAGCCAAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTGGTCTC
* *
19425287 GACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAACGGGCGTGCGGG
651 GACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCGAAGCCAACCCACAAAACGGGCATGCGGG
* ** * * * * *
19425352 CACTTAGCTTGCCAGACAGGCAGAATGCTCAAGCCGGGGATCAGCTCGATCCCTCCTGCGTGCTA
716 CACTCAGCCGGCCAGACAGGCAGAATACTCAAGCCGAGGATCAACTCGATCCCTCCTGCATACTA
* ** * * * * * *
19425417 TCGATCCTACTGTCGTAACCCTCGGTCCGATCCGATGTTAGATTGGGAATGAACTCCGTATC
781 CCGATCCTACTGTCACAACCCTCGGTCAGATCCAATCTTAGACTAGGAATGAACTCCATATC
* *
19425479 CTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGTGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCAGGTGCTCAAC
* * * * * *
19425544 CGGCCGAAGAGGCATAATGCGTAAGTCAGGGATCAGCCCGGTCCCCCTCTGTATGCTGTCAATCC
66 CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCAATCC
* * * *
19425609 TACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
131 CACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAA
* * * * **
19425674 CCCACGAAACGAGTGTGCGGGTGCT-AAGCCAATC-GGAGATGCAAAATGTGCAAGTCGGGGATC
196 CCCACGAAACGAGCGTGCAGGTGCTCAA-CCAA-CAAGAGACGCAAAATGCACAAGTCGGGGATC
* * * *
19425737 GGTCC-GGTCCCCCCCTATGTGCTGTCGATCCTGCTACTAGTCCTACTGCTGCAACCCTCGGTCC
259 GG-CCTGAT-CCCCCCTACGTGCTGCCGATCATG---CT-G---T-C-G-T--AACCCTCGGTCC
* * *
19425801 GATCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTTCGTATGCCTA
310 GATCCAATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCGTATGCCTA
* * ** *
19425865 AGCCATCCCACGAAACGAGCGTGCGTGCGGGCGCTCAGCCGA-TTGAAGAGGCAGAATGCCCAAG
374 AGCCAACCCACGAAACGA----GCGTGCGGGCGCTCAACCGACCAG-AGAGGCAGAACGCCCAAG
* * * * * * *
19425929 TCGGGGATCGACCTGGTCCCCCCTACGTGCTGTCGATCCTATTTTCATAACCCTCCATTCAG-TC
434 TCGGGGATCAACCCGGT-CCCCCTACATGCTGTCGATCCTACTGTCACAACCCT-CAGTCAGATC
* * *
19425993 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CAAACAAATGTGCGGGCGCT
497 CGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATCAAACAAATGTGCAGGCACT
** * * **
19426057 GAG-CAGACCGGAGAGGCATAATGTGTAAGCCGAGGATTGGCCCAGTCCCCCTCTGCGTGCTGTC
562 GAGCCAG-CCAAAGAGGCA-AATGCGTAAGCCAAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTC
* *
19426121 GGTCCCGCTACCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
625 GGTCCCGCTACCACAACCCT-GGTCTCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCGA
* * * *
19426185 AGCCAACCCACAAAACGGGCATGCGGGGC-CTCAGCCGGCCGGAGAGGTAGAATACGT-AAGTCG
689 AGCCAACCCACAAAACGGGCATGC-GGGCACTCAGCCGGCCAGACAGGCAGAATAC-TCAAGCCG
* * * **
19426248 AGGATCAACTCGATCCCTCCTGTATACTACCGATCCTGCTGTCACAACCCTCGGTCAGGTTTAAT
752 AGGATCAACTCGATCCCTCCTGCATACTACCGATCCTACTGTCACAACCCTCGGTCAGATCCAAT
*
19426313 CTTAGACTAGGAATGAACTCCATATG
817 CTTAGACTAGGAATGAACTCCATATC
* * * * * * *
19426339 CTTAGATTGGGGATGAACTTCGTATGCGTAAGTCAACCCATGACACGAGCATGC-GGACGCTCAA
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCAGG-TGCTCAA
* ** *
19426403 CC-GACGAGAGAGGCAGGATGCGAAAGCCAGGGATC
65 CCAGCCGA-AGAGGCATAATGCGCAAGCCAGGGATC
19426438 GAACGAGTGG
Statistics
Matches: 786, Mismatches: 142, Indels: 44
0.81 0.15 0.05
Matches are distributed among these distances:
841 2 0.00
842 220 0.28
843 22 0.03
846 2 0.00
847 1 0.00
850 1 0.00
851 1 0.00
852 1 0.00
853 1 0.00
854 1 0.00
855 81 0.10
858 4 0.01
859 80 0.10
860 357 0.45
861 12 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (842 bp):
CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCAGGTGCTCAAC
CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCAATCC
CACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAA
CCCACGAAACGAGCGTGCAGGTGCTCAACCAACAAGAGACGCAAAATGCACAAGTCGGGGATCGG
CCTGATCCCCCCTACGTGCTGCCGATCATGCTGTCGTAACCCTCGGTCCGATCCAATCTTAGACT
GAGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
AGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAACGCCCAAGTCGGGGATCAACCCGGTCCCCC
TACATGCTGTCGATCCTACTGTCACAACCCTCAGTCAGATCCGATCTTAGACTGGGAATGAACTC
CGTATGCATAAGTCAACCCATCAAACAAATGTGCAGGCACTGAGCCAGCCAAAGAGGCAAATGCG
TAAGCCAAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTGGTCTC
GACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCGAAGCCAACCCACAAAACGGGCATGCGGG
CACTCAGCCGGCCAGACAGGCAGAATACTCAAGCCGAGGATCAACTCGATCCCTCCTGCATACTA
CCGATCCTACTGTCACAACCCTCGGTCAGATCCAATCTTAGACTAGGAATGAACTCCATATC
Found at i:19426962 original size:11 final size:11
Alignment explanation
Indices: 19426946--19426978 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
19426936 CGGTTAGGCT
*
19426946 CTCCGATGATG
1 CTCCGACGATG
19426957 CTCCGACGATG
1 CTCCGACGATG
19426968 CTCCGACGATG
1 CTCCGACGATG
19426979 GTGCCCCAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:19427292 original size:120 final size:120
Alignment explanation
Indices: 19427074--19427295 Score: 284
Period size: 120 Copynumber: 1.9 Consensus size: 120
19427064 ACTCCATATG
* ** *
19427074 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAGC
* * * * *
19427139 CGACCGGAGAGGTAGAATGCACAAGTTGGGGATCGGCTCATTTCGTTCTATCGAT
66 CGACCGAAGAGGCAGAATACACAAGTCGAGGATCGGCTCATTTCGTTCTATCGAT
* * *
19427194 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCATTAAG
1 CTTAGACAT-GGAATGAACTCCGTACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAG
** * *
19427258 CCGATTGAAGAGGCATAATACGCAAGTCGAGGATCGGC
65 CCGACCGAAGAGGCAGAATACACAAGTCGAGGATCGGC
19427296 CCGGTCCCCC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
119 1 0.01
120 84 0.99
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.19
Consensus pattern (120 bp):
CTTAGACATGGAATGAACTCCGTACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAGC
CGACCGAAGAGGCAGAATACACAAGTCGAGGATCGGCTCATTTCGTTCTATCGAT
Found at i:19427929 original size:26 final size:26
Alignment explanation
Indices: 19427892--19427944 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19427882 TGGTCTGATA
19427892 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
19427918 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
19427944 T
1 T
19427945 GAAGCCAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:19428421 original size:26 final size:26
Alignment explanation
Indices: 19428392--19428444 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19428382 CCGATCTGAT
*
19428392 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGCGG-ATGAACTCCGTATG
19428418 CTTAGACTGCGGATGAACTCCGTATG
1 CTTAGACTGCGGATGAACTCCGTATG
19428444 C
1 C
19428445 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGGATGAACTCCGTATG
Found at i:19428770 original size:26 final size:26
Alignment explanation
Indices: 19428734--19428786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19428724 CCGGTCTGAT
*
19428734 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
19428760 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
19428786 C
1 C
19428787 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:19430506 original size:159 final size:157
Alignment explanation
Indices: 19430133--19430963 Score: 429
Period size: 159 Copynumber: 5.2 Consensus size: 157
19430123 CAATGCTTGG
* * * *
19430133 TCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGC
1 TCCGGTCCAAGCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGC
* * * *
19430198 GGGCGCTAGCCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTTGCATGC
66 GGGCGCTAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGATCCCCCTTGCATGC
** * *
19430263 TATCGATCCTGCTGTCGCAACCCTCCA
131 TATCGATCCCACTGCCACAACCCTCCA
* * * * * * * *
19430290 TCCGGTCCAATCTTGGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCTACAAAACGTGCGTG
1 TCCGGTCCAAGCTTAGACTT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTG
* * * * * * * *
19430354 CGGGTGTTGAACCGGCCGAAGAGGCATAATGTGTAAGTCGGGGATCAGCCCGATCCCCCTCTGCG
65 CGGGCGCT-AACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGATCCCCCT-TGCA
* * **
19430419 TGCTGTCGGTCCCACTGCCACAACCCTCGG
128 TGCTATCGATCCCACTGCCACAACCCTCCA
* * * *
19430449 TCTGG-CTAGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTG
1 TCCGGTCCA-AGCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA----C--G
* ** * * * * ** * * *
19430513 CAGGCGTGCAGGCGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCTGGT-CC
59 -A-GCGTGCGGGCGCT-AACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGATCCC
* * **
19430577 CCTCTGCATGCTGTCAATCCTGCTGCCACAACCCT-CA
121 CCT-TGCATGCTATCGATCCCACTGCCACAACCCTCCA
* * * * * * * *
19430614 GTCCGGTCTAATCTTAGACTTTGGAATTAACTTCGTATGCCTAAGTCAACCTACGAAATGAGCGT
1 -TCCGGTCCAAGCTTAGAC-TTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGT
* * * * ** * *
19430679 GCGGGCGCTCAACC-AGTCGGAGAGGCATAATACACAAGCCGGGGATCAACCCGATCCCTCAC-T
64 GCGGGCGCT-AACCGA-CCGAAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGATCCC-C-CTT
* * ** * *
19430742 GCGTGCTACCGATCCTGCTACCAGAACCCT-CA
125 GCATGCTATCGATCCCACTGCCACAACCCTCCA
* * **** * * * * * * * *
19430774 GCCCGATTGGGGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACACATGAGATGGGCGTG
1 -TCCGGTCCAAGCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTG
* * * * * * *
19430839 CGGGTGCTCAGCCGATCGAACAGGCAGAATGCGCAAGCCGGGGATCA-CCCTGGTCCCTCC-TGC
65 CGGGCGCT-AACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCAGCCC-GATCCC-CCTTGC
* * * * ** *
19430902 GTGCTGTAGATCCTACTGCCGTAACCCTCGA
127 ATGCTATCGATCCCACTGCCACAACCCTCCA
** * *
19430933 TCCGGTCTGATCTTAGACTGGGAATGAACTC
1 TCCGGTCCAAGCTTAGACTTGGAATGAACTC
19430964 TGTATGCTTA
Statistics
Matches: 518, Mismatches: 133, Indels: 45
0.74 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 58 0.11
158 95 0.18
159 193 0.37
160 44 0.08
161 2 0.00
162 1 0.00
163 1 0.00
165 1 0.00
166 43 0.08
167 79 0.15
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
TCCGGTCCAAGCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGC
GGGCGCTAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGATCCCCCTTGCATGC
TATCGATCCCACTGCCACAACCCTCCA
Found at i:19430746 original size:326 final size:324
Alignment explanation
Indices: 19430144--19430970 Score: 843
Period size: 326 Copynumber: 2.6 Consensus size: 324
19430134 CCGATCCAAT
*
19430144 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA---C--G-A-GCGTGCGGGC
1 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAGGGCGTGCAGGCGTGC-GGC
* * * * *
19430202 GCT-AGCCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCC-CTTGCATGCTA
65 GCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTC-TGCATGCTG
* * * *
19430265 TCGATCCTGCTGTCGCAACCCTCCA-TCCGGTCCAATCTTGGA-TTGGGAATGAACTCCGTATGC
129 TCAATCCTGCTGCCGCAACCCT-CAGTCCGGTCTAATCTTAGACTTGGGAATGAACTCCGTATGC
* * * * * **** *
19430328 ATAAGTCAACCTACAAAACGTGCGTGCGGGTGTTGAACCGGCCGAAGAGGCATAATGTGTAAGTC
193 ATAAGTCAACCTACAAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCATAATACACAAGCC
* * ** * * * * * *
19430393 GGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCTGGCTAG
258 GGGGATCAACCCGATCCCCCACTGCGTGCTACCGATCCCACTACCACAACCCTCAGCCCGACTAG
19430458 GG
323 GG
* *
19430460 CTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGTGCAGG
1 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA-GGGCGTGCAGGCGTGC-GG
* * *
19430525 CGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCTGGTCCCCTCTGCATGCTG
64 CGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCTGCATGCTG
* * * * *
19430590 TCAATCCTGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTTTGGAATTAACTTCGTATGCC
129 TCAATCCTGCTGCCGCAACCCTCAGTCCGGTCTAATCTTAGACTTGGGAATGAACTCCGTATGCA
* * * *
19430655 TAAGTCAACCTACGAAATGAGCGTGCGGGCGCTCAACCAGTCGGAGAGGCATAATACACAAGCCG
194 TAAGTCAACCTACAAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCATAATACACAAGCCG
* ** * * *
19430720 GGGATCAACCCGATCCCTCACTGCGTGCTACCGATCCTGCTACCAGAACCCTCAGCCCGATTGGG
259 GGGATCAACCCGATCCCCCACTGCGTGCTACCGATCCCACTACCACAACCCTCAGCCCGACTAGG
19430785 G
324 G
* * * * *
19430786 CTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACACATGAGATGGGCGTGC-GG-GT-----
1 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGA-AAGGGCGTGCAGGCGTGCGGC
* * ** *
19430844 GCTCAGCCGATCGAACAGGCAGAATGCGCAAGCCGGGGATCACCCTGGT-CCCTCCTGCGTGCTG
65 GCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCT-CTGCATGCTG
* * * *
19430908 T-AGATCCTACTGCCGTAACCCTC-GATCCGGTCTGATCTTAGAC-TGGGAATGAACTCTGTATG
129 TCA-ATCCTGCTGCCGCAACCCTCAG-TCCGGTCTAATCTTAGACTTGGGAATGAACTCCGTATG
19430970 C
192 C
19430971 TTAGACTGGG
Statistics
Matches: 422, Mismatches: 73, Indels: 31
0.80 0.14 0.06
Matches are distributed among these distances:
316 42 0.10
317 22 0.05
318 86 0.20
320 1 0.00
322 1 0.00
323 1 0.00
324 16 0.04
325 86 0.20
326 166 0.39
327 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (324 bp):
CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAGGGCGTGCAGGCGTGCGGCG
CTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCTGCATGCTGTC
AATCCTGCTGCCGCAACCCTCAGTCCGGTCTAATCTTAGACTTGGGAATGAACTCCGTATGCATA
AGTCAACCTACAAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCATAATACACAAGCCGGG
GATCAACCCGATCCCCCACTGCGTGCTACCGATCCCACTACCACAACCCTCAGCCCGACTAGGG
Found at i:19430995 original size:26 final size:26
Alignment explanation
Indices: 19430944--19430996 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19430934 CCGGTCTGAT
**
19430944 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19430970 CTTAGACTGGGGATGATCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19430996 C
1 C
19430997 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19432064 original size:159 final size:158
Alignment explanation
Indices: 19431620--19432070 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 158
19431610 TCCATATTCC
* * **
19431620 TAGACATGGAATGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCTTGCGGGCACTCAGCCG
1 TAGA-ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* * * * * * *
19431685 GTCCGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGATCCCCCC-TGTGTGCTGCCGATCTTG
65 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTATGTGCTGTCGATCCTG
* * *
19431749 CTAACGCAACCCTAGGTCTAGTCCGAGCT
130 CTACCACAACCCTAGGTCGAGTCCGAGCT
* * * * * *
19431778 TAGACTAGGAATGAAC-CACGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCT
1 TAGAAT-GGAATGAACTC-CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * *
19431842 GGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAAT-CCCCCTCTATGTGCAGTCGATCC
64 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCT-TATGTGCTGTCGATCC
* * * * *
19431906 CGCTACCACAACCCTCGGTCCGGGT-GGGGCT
128 TGCTACCACAACCCTAGGT-CGAGTCCGAGCT
* * *
19431937 TAGAGATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAGCC-
1 TAGA-ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* * * *
19432001 GACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTTATGTGTTGTTGATCCT
65 GTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTATGTGCTGTCGATCCT
19432066 GCTAC
129 GCTAC
19432071 TGGTCCTGCT
Statistics
Matches: 236, Mismatches: 48, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 85 0.36
159 133 0.56
160 11 0.05
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
TAGAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGG
TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTATGTGCTGTCGATCCTGC
TACCACAACCCTAGGTCGAGTCCGAGCT
Found at i:19432157 original size:26 final size:26
Alignment explanation
Indices: 19432106--19432158 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19432096 CCGATCAGAT
* *
19432106 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
19432132 CTTAGACAT-GGAATAAACTCCCTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
19432158 C
1 C
19432159 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:19432485 original size:159 final size:156
Alignment explanation
Indices: 19432131--19432555 Score: 403
Period size: 156 Copynumber: 2.7 Consensus size: 156
19432121 AACTCTATAT
* * * *
19432131 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * * * *
19432196 TCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGTCCCCCCTACATGCTGTCGATCCT
66 CCGACCGAAGAGGCAGAATCCGCAAGCCGGGGATCGGCCGGTCCCCCCTACATGCTGCCGATCCC
** * * *
19432261 GCTGGGCAACCCTCGGTCTGATCCAA
131 GCTGCCCAACCCTCAGTCCGAGCCAA
* * * * * * *
19432287 TCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTGA
1 GCTTAGA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * *
19432351 GCCGACC-AGAGAGGCATAATCCGCAAGCCGGGGATCGATCCGGTCCCCTTCTACGTGCTGCC-A
65 ACCGACCGA-AGAGGCAGAATCCGCAAGCCGGGGATCG-GCCGGTCCCC-CCTACATGCTGCCGA
*
19432414 GTCCCGCTGCCCCAACCCTCAGTCCG-GCCAGG
127 -TCCCGCTG-CCCAACCCTCAGTCCGAGCCA-A
* **
19432446 GCTTAGATATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGAGCGTACGGGATCTCAA
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * * *
19432511 CCGA-TGGAGAGGCAGAATGCGTAAGCTC-GGGATCGACTCGGTCCC
66 CCGACCGAAGAGGCAGAATCCGCAAGC-CGGGGATCGGC-CGGTCCC
19432556 TATTATGTGC
Statistics
Matches: 213, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
155 1 0.00
156 82 0.38
157 10 0.05
158 51 0.24
159 69 0.32
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (156 bp):
GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
CCGACCGAAGAGGCAGAATCCGCAAGCCGGGGATCGGCCGGTCCCCCCTACATGCTGCCGATCCC
GCTGCCCAACCCTCAGTCCGAGCCAA
Found at i:19432633 original size:26 final size:26
Alignment explanation
Indices: 19432604--19432656 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19432594 CTGGTCTGAT
*
19432604 CTTAGACTAGGAATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
19432630 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
19432656 C
1 C
19432657 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:19433364 original size:26 final size:26
Alignment explanation
Indices: 19433326--19433378 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19433316 GGCTCAAAAT
*
19433326 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGCATG
*
19433352 CTTAGAC-ATGGAATGAACTCCGCATG
1 CTTAGACTA-GGAATGAACACCGCATG
19433378 C
1 C
19433379 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGCATG
Found at i:19433653 original size:159 final size:156
Alignment explanation
Indices: 19433352--19433854 Score: 566
Period size: 159 Copynumber: 3.2 Consensus size: 156
19433342 ACACCGTATG
* *
19433352 CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19433416 TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAATCCCCCCCTACGTGCTATCAATC
66 T-GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCCTACGTGCTGTCGATC
*
19433481 CTGCTGCCGCAACCCTCGATCCAGTCTAAT
129 CTGCTGCC-CAACCCTCGATCC-GTCTGAT
* * *
19433511 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
19433575 CTGGCCGAAGAGGCATAACGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTTGGTC
65 CTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATC
* * * **
19433640 CCGTTGCCACAACCCTC-AGTCCGGCTGGGG
129 CTGCTGCC-CAACCCTCGA-TCCGTCT-GAT
* * * *
19433670 CGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 C-TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
19433735 CCGGCCAAAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGA-CCCCCCTGCGTGCTGCCGATCC
65 CTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* *
19433799 TGCTGTCCCAACCCTCGGTCTGATCTGAT
130 TGCTG-CCCAACCCTCGATCCG-TCTGAT
19433828 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
19433855 TTAGACTAGG
Statistics
Matches: 286, Mismatches: 47, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
156 1 0.00
157 23 0.08
158 39 0.14
159 131 0.46
160 91 0.32
161 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.17
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
GCTGCCCAACCCTCGATCCGTCTGAT
Found at i:19433869 original size:26 final size:26
Alignment explanation
Indices: 19433828--19433880 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19433818 CTGATCTGAT
19433828 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19433854 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
19433880 C
1 C
19433881 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19435812 original size:26 final size:26
Alignment explanation
Indices: 19435783--19435835 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19435773 CCGGTCTGAT
19435783 CTTAGAC-TGGGAATGAAC-TCCGTATG
1 CTTAGACAT-GGAATGAACAT-CGTATG
19435809 CTTAGACATGGAATGAACATCGTATG
1 CTTAGACATGGAATGAACATCGTATG
19435835 C
1 C
19435836 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACATCGTATG
Found at i:19435814 original size:184 final size:185
Alignment explanation
Indices: 19435624--19435994 Score: 525
Period size: 184 Copynumber: 2.0 Consensus size: 185
19435614 TCCAATTGGG
* * *
19435624 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCG
1 GCTTAGACATGGAATGAACAT-CGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCA
** * *
19435688 GCCGGCCGGAGAGGCAGAATGCGCAAG-CTGAGGATTGGCCCGGTCC-CCCCTGCGTGCTGCCGA
65 GCCAACCGGAGAGGCAGAATGCGCAAGTC-GAGGATCGGCCCGGTCCACCCCTGCGTGCTACCGA
* * *
19435751 TCCTACTG-TCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
129 TCCTACTGCT-ACAACCCTCGGTCCAGTCTAAACTTAGACTGGGAATGAACTCCGTAT
*
19435808 GCTTAGACATGGAATGAACATCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACATCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAG
* * * * *
19435873 CCAATCGGAGAGGCGGAATGCGCAAGTCGAGGATCGGCTCGGTCCACCCCTGTGTGCTATCGATC
66 CCAACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCACCCCTGCGTGCTACCGATC
* *
19435938 CTACTGCTGCAACCCTCTGTCCAGTCTAAACTTAGACTGGGAATGAACTCCGTAT
131 CTACTGCTACAACCCTCGGTCCAGTCTAAACTTAGACTGGGAATGAACTCCGTAT
19435993 GC
1 GC
19435995 CTAAGTCAAC
Statistics
Matches: 165, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
184 96 0.58
185 68 0.41
186 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACATCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAG
CCAACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCACCCCTGCGTGCTACCGATC
CTACTGCTACAACCCTCGGTCCAGTCTAAACTTAGACTGGGAATGAACTCCGTAT
Found at i:19436205 original size:159 final size:158
Alignment explanation
Indices: 19435808--19436253 Score: 445
Period size: 159 Copynumber: 2.8 Consensus size: 158
19435798 AACTCCGTAT
*
19435808 GCTTAGACATGGAATGAACAT-CGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCA
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCA
* * * * * *
19435872 GCCAATCGGAGAGGCGGAATGCGCAAGTCGAGGATCGGCTCGGTCCACCCCTGTGTGCTATCGAT
64 GTCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCTCGATCCACCCCTGTGTGCTACCGAT
* ** * *
19435937 CCTACTGCTGCAACCCTCTGTCCAGTCTAA
129 CCCACTGCCACAACCCTCGGTCCAGGCTAA
* * * * *
19435967 ACTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCA
* * * * * * * * * * * *
19436031 GTCGACCAGAAAGGCATAATGCACAAATCGGGGATTGGCCCGATCC-CTCTCTGTGTGTTGCCGG
64 GTCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCTCGATCCAC-CCCTGTGTGCTACCGA
* *
19436095 TCCCACTGCCACAACCCTCGGT-CTGGCTAGG
128 TCCCACTGCCACAACCCTCGGTCCAGGCTA-A
* * *
19436126 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGTCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-CGCTCAG
* * * *
19436191 TCGGTCGGAGAGGCAGAATGCGTAAGTCGAGGATTGGCTCGAT-C-GCCCTGCGTGCTACCGATC
65 TCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCTCGATCCACCCCTGTGTGCTACCGATC
19436254 TGCTACCGTA
Statistics
Matches: 225, Mismatches: 56, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 13 0.06
158 11 0.05
159 200 0.89
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGT
CGATCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCTCGATCCACCCCTGTGTGCTACCGATCC
CACTGCCACAACCCTCGGTCCAGGCTAA
Found at i:19442965 original size:26 final size:26
Alignment explanation
Indices: 19442913--19442965 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19442903 GGCTCAAAAT
*
19442913 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
19442939 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
19442965 C
1 C
19442966 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:19443299 original size:159 final size:156
Alignment explanation
Indices: 19442942--19443375 Score: 486
Period size: 156 Copynumber: 2.8 Consensus size: 156
19442932 TCGCATGCTT
* * * *
19442942 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGCCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA
* * * * * *
19443007 CTGGAGAGGTAGAATTCGCAAGTCAGGGATCAGCCTGGTCCCCCCTGCGTGCTATCGATCCTACT
66 CTGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCCACT
* *
19443072 ATCGTACACTCGATCAGGTCCATCTT
131 ATCGCACACTCGATCAGGTCCATCTC
* * * *
19443098 AGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCA
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
19443162 ACCGGAGAGGCATAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCA
65 ACTGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGGTCCCCC-CTGCGTGCTATCGATCCCA
19443227 CTA-C-CACAAC-CG-TCA-GTCCAGCTGGGGCTC
129 CTATCGCAC-ACTCGATCAGGTCCA--T----CTC
* * *
19443257 AGACATGGAATGAACT-TGCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAACCG
1 AGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * *
19443321 GCTGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCTCGGTCCCTCCTGCGTGCTA
65 ACTGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTA
19443376 CCTATCCTGA
Statistics
Matches: 233, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
153 5 0.02
154 3 0.01
155 6 0.03
156 95 0.41
157 19 0.08
158 10 0.04
159 94 0.40
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA
CTGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCCACT
ATCGCACACTCGATCAGGTCCATCTC
Found at i:19443453 original size:26 final size:26
Alignment explanation
Indices: 19443414--19443463 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19443404 AGTCCGATCT
* *
19443414 TAGATTGGGAATGAACTCTGTATGCA
1 TAGACTGGGAATGAACTCTATATGCA
*
19443440 TAGACTGGGGATGAACTCTATATG
1 TAGACTGGGAATGAACTCTATATG
19443464 TCTAAGTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTATATGCA
Found at i:19444175 original size:26 final size:26
Alignment explanation
Indices: 19444137--19444189 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19444127 GGCTCAAAAT
19444137 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
19444163 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAGGAACTCCGTATG
19444189 C
1 C
19444190 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:19444898 original size:26 final size:26
Alignment explanation
Indices: 19444860--19444912 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19444850 CTGGTCTGAT
19444860 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19444886 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19444912 C
1 C
19444913 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19445366 original size:159 final size:158
Alignment explanation
Indices: 19444886--19445388 Score: 518
Period size: 159 Copynumber: 3.2 Consensus size: 158
19444876 ACTCCGTATG
* *
19444886 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACA-AGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGG-TCTCA
* * * * ** * * *
19444949 GCTGGCTGGAGAGGCAGAATGCGCAAGCCAAGGATCAACCCAATCCCCCTTGCATGCTGTCGATC
64 GCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCCCTGCGTGCTGTCGATC
* * *
19445014 CTACTGTCGCAACCCTCGAT-TCGATCCGAT
129 CTGCTGTCGCAACCCTCGGTCTCG-TCTGAT
** * *
19445044 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAAC-GAGCGTGCGGGTGTTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGT-CTCAG
* * * * *
19445108 CCGATCAGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCC-CTGCGTGCTGTCGATC
** * * * **
19445173 CTGCTACCACAACCCTCAGTC-CGGCTAGGG
129 CTGCTGTCGCAACCCTCGGTCTCGTCT-GAT
* *
19445203 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGA-CGTGCGGGTACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGT-CTC-
* * * *
19445266 AGCCGACCGGAGAGGCAGAATGCGAAAGTCGGGGATCGGCCCTATCCCCCCTGCGTGCTGCCGAT
63 AGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCCCTGCGTGCTGTCGAT
* *
19445331 CCTGCTGTCGCATCCCTCGGTCTAGTCTGAT
128 CCTGCTGTCGCAACCCTCGGTCTCGTCTGAT
19445362 CTTAGACTGGGAATGAAC-CCTGTATGC
1 CTTAGACTGGGAATGAACTCC-GTATGC
19445389 TTAGACTGTG
Statistics
Matches: 278, Mismatches: 55, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 95 0.34
159 132 0.47
160 50 0.18
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGTCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCCCTGCGTGCTGTCGATCCT
GCTGTCGCAACCCTCGGTCTCGTCTGAT
Found at i:19445413 original size:26 final size:26
Alignment explanation
Indices: 19445362--19445414 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19445352 CTAGTCTGAT
*
19445362 CTTAGACTGGGAATGAACCCTGTATG
1 CTTAGACTGGGAATGAACCCTATATG
19445388 CTTAGACTGTGG-ATGAACTCC-ATATG
1 CTTAGACTG-GGAATGAAC-CCTATATG
19445414 C
1 C
19445415 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCTATATG
Found at i:19446569 original size:159 final size:157
Alignment explanation
Indices: 19446110--19446572 Score: 536
Period size: 158 Copynumber: 2.9 Consensus size: 157
19446100 AACTCCATAT
* ** *
19446110 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTATACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
19446175 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGG-TCGGCCCGGTCCCCCCTATATGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGACCCAGT-CCCCCTACATGCTGTCGATC
* *
19446239 CTGTTGCTGCAACCCTTGGTCTGGCTCGA
129 CTGCTGCTGCAACCCTCGGTCTGGCTCGA
* * * * *
19446268 TCTCATAC-TGGGAATGAACTCCTTATG-CATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTG
1 GCTTATACAT-GGAATGAACTCCCTATGCCA-AAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * *
19446331 AGCTGACCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCAGTCCCCTCTACGTGCTGCCGAT
64 AGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCC-CTACATGCTGTCGAT
* ** * *
19446396 CCCGCTGCCACAACCCTCGGTCTGGCTGGG
128 CCTGCTGCTGCAACCCTCGGTCTGGCTCGA
** *
19446426 GCTTATACATGGAATGAACTCCCTATGCCAAAGCCAACCCACAAAATGAGCGTGCGGGTCGCTCA
1 GCTTATACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGG-CGCTCA
** *
19446491 GCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCTTGCCTGCATGCTGTCGATC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTC-CCCCTACATGCTGTCGATC
*
19446556 CTACTGCTGCAACCCTC
129 CTGCTGCTGCAACCCTC
19446573 TATCCGATCC
Statistics
Matches: 251, Mismatches: 46, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
157 11 0.04
158 163 0.65
159 76 0.30
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTATACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTACATGCTGTCGATCCT
GCTGCTGCAACCCTCGGTCTGGCTCGA
Found at i:19446615 original size:26 final size:26
Alignment explanation
Indices: 19446586--19446638 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19446576 CCGATCCGAT
*
19446586 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19446612 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19446638 C
1 C
19446639 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19446971 original size:26 final size:26
Alignment explanation
Indices: 19446942--19446994 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19446932 CTGGTTCGAT
*
19446942 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
** *
19446968 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19446994 C
1 C
19446995 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19447536 original size:26 final size:26
Alignment explanation
Indices: 19447498--19447550 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19447488 GGCTCAAACT
19447498 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19447524 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
19447550 C
1 C
19447551 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19448701 original size:11 final size:11
Alignment explanation
Indices: 19448685--19448717 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
19448675 TAGTTAGGCT
19448685 CTCCGATGATG
1 CTCCGATGATG
19448696 CTCCGATGATG
1 CTCCGATGATG
*
19448707 CTCCGACGATG
1 CTCCGATGATG
19448718 GTGCTCGGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.27, T:0.24
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:19449171 original size:26 final size:26
Alignment explanation
Indices: 19449129--19449180 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19449119 CCAGTCTGAT
19449129 TTAGACTGGGAAAGAACTCCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
* *
19449155 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
19449181 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGTATGC
Found at i:19449954 original size:26 final size:26
Alignment explanation
Indices: 19449918--19449970 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19449908 GGCTCAAAAT
19449918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19449944 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19449970 C
1 C
19449971 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19450574 original size:159 final size:158
Alignment explanation
Indices: 19450155--19450575 Score: 443
Period size: 157 Copynumber: 2.7 Consensus size: 158
19450145 TCCGTATGCC
* * * * *
19450155 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGTGCTCAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGAGCTCAGCCG
* * * **
19450220 GCCAGAGAGGTAGAATGCACAAGTCGGGGACCGACCTGGTCCCCCCTACGTGCTGTCGATCCTAC
66 GCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTGGTCCCCCCTACGTGCTACCGATCCTAC
* * *** *
19450285 CGTCGCAACCCTCGGTCCGGTTCGATCT
131 CGCCACAACCCTCGGTCCAACTCGAGCT
* * * * **
19450313 TAGAC-TGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTTTGGGAGC-CGAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGAGCTC-AGCC
* * * * *
19450376 GACCGGAGAGGCATAATGCACAAG-CTGGGGATCAACCTGGTCCCCCTCTACGTGCTACCGGTCT
65 GGCCGGAGAGGCAGAATGCACAAGTC-GGGGATCGACCTGGTCCCCC-CTACGTGCTACCGATCC
* * * * *
19450440 TGCTGCCACAACCCTTGGTCCAACTGGGGCT
128 TACCGCCACAACCCTCGGTCCAACTCGAGCT
* * * *
19450471 TAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCATGAAACGGGCGTACGGGGGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGAGCTCAGCCG
* * *
19450536 GTCGGAGAGGCAGAATGCATAAGTCGGGGATCGGCCTGGT
66 GCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTGGT
19450576 TCGCACGGCG
Statistics
Matches: 210, Mismatches: 47, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
156 2 0.01
157 84 0.40
158 43 0.20
159 79 0.38
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGAGCTCAGCCG
GCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTGGTCCCCCCTACGTGCTACCGATCCTAC
CGCCACAACCCTCGGTCCAACTCGAGCT
Found at i:19450632 original size:159 final size:158
Alignment explanation
Indices: 19450155--19450654 Score: 504
Period size: 159 Copynumber: 3.2 Consensus size: 158
19450145 TCCGTATGCC
* * * * *
19450155 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGTGCTCAACCG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGAGCTCAGCCG
* * * * * *
19450220 GCCAGAGAGGTAGAATGCACAAGTCGGGGACCGACCTGGTCCCCCCTACGTGCTGTCGATCCTAC
65 GCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTGGTCCCCACTACGTGCTGCCGATCCTGC
*
19450285 CGTCGCAACCCTCGGTCCGGT-TCGATCT
130 TGTCGCAACCCTCGGTCCGGTCTCGATCT
* * * * **
19450313 TAGACTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTTTGGGAGC-CGAGCCG
1 TAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGAGCTC-AGCCG
* * * * * * *
19450377 ACCGGAGAGGCATAATGCACAAG-CTGGGGATCAACCTGGTCCCCCTCTACGTGCTACCGGTCTT
65 GCCGGAGAGGCAGAATGCACAAGTC-GGGGATCGACCTGGT-CCCCACTACGTGCTGCCGATCCT
* * * ** * **
19450441 GCTGCCACAACCCTTGGTCC-AACTGGGGCT
128 GCTGTCGCAACCCTCGGTCCGGTCTCGATCT
* * * *
19450471 TAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCATGAAACGGGCGTACGGGGGCTCAGCCG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGAGCTCAGCCG
* * * * * **
19450536 GTCGGAGAGGCAGAATGCATAAGTCGGGGATCGGCCTGGTTCGCACGGCGTGCTGCCGATCCTGC
65 GCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTGGTCCCCACTACGTGCTGCCGATCCTGC
*
19450601 TGTCGCAACCCTCGGTCCGGTCTTGATCT
130 TGTCGCAACCCTCGGTCCGGTCTCGATCT
*
19450630 TAGACTGGGAATGAACTCCATATGC
1 TAGACT-GGAATGAACTCCGTATGC
19450655 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 64, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 79 0.29
158 80 0.30
159 106 0.39
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
TAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGAGCTCAGCCGG
CCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTGGTCCCCACTACGTGCTGCCGATCCTGCT
GTCGCAACCCTCGGTCCGGTCTCGATCT
Found at i:19451329 original size:26 final size:26
Alignment explanation
Indices: 19451281--19451331 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19451271 GATCTGATCA
**
19451281 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
19451307 TAGATTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
19451332 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:19452039 original size:26 final size:26
Alignment explanation
Indices: 19452001--19452053 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19451991 GGCTTAAACT
*
19452001 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19452027 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19452053 C
1 C
19452054 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19452367 original size:155 final size:157
Alignment explanation
Indices: 19452024--19452367 Score: 375
Period size: 159 Copynumber: 2.2 Consensus size: 157
19452014 TGAACTCTGT
* * * *
19452024 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGTTC
1 ATGCTTAGACATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
** * * * * * *
19452089 AACCGGCTGAAGATGTAGAATGCGCAAGCCGAGGATCAGCTCGGTCACCCTCTGCGTGCTGCTGA
65 AACCGGCCAAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCACCCCCTGCGTGCTGCTGA
*
19452154 TGCCGCTGCCACAACCCTCGGTCTGGTC
130 TACCGCTGCCACAACCCTCGGTCTGGTC
19452182 ATGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
1 AT-GCTTAGACATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
** *
19452247 CAGTCGGCCAAAGAGGCAGAATG-ACAA-CC-AGGGATC-TCCCGATC-CCCCCTGCGTGCTG-T
64 CAACCGGCCAAAGAGGCAGAATGCACAAGCCGA-GGATCAGCCCGATCACCCCCTGCGTGCTGCT
19452306 CGA-ACCTGCTG-CAGCAACCCTCGGTCTGGTCC
128 -GATACC-GCTGCCA-CAACCCTCGGTCTGGT-C
19452338 GAT-CTTAGAC-TGAGAATGAACTCTATATGC
1 -ATGCTTAGACATG-GAATGAACTCT-TATGC
19452368 TTAGACTGGG
Statistics
Matches: 161, Mismatches: 16, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
154 9 0.06
155 56 0.35
156 7 0.04
157 9 0.06
158 5 0.03
159 75 0.47
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
ATGCTTAGACATGGAATGAACTCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
ACCGGCCAAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCACCCCCTGCGTGCTGCTGAT
ACCGCTGCCACAACCCTCGGTCTGGTC
Found at i:19452392 original size:26 final size:26
Alignment explanation
Indices: 19452341--19452393 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19452331 CTGGTCCGAT
*
19452341 CTTAGACTGAGAATGAACTCTATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
19452367 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
19452393 C
1 C
19452394 CTAAGTCAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:19452575 original size:26 final size:26
Alignment explanation
Indices: 19452537--19452589 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19452527 TCGATCTGAT
19452537 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19452563 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19452589 C
1 C
19452590 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19452655 original size:196 final size:196
Alignment explanation
Indices: 19452321--19452692 Score: 516
Period size: 196 Copynumber: 1.9 Consensus size: 196
19452311 CTGCTGCAGC
* * *
19452321 AACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCTATATGCTTAGACTGGGGATGAACT
1 AACCCTCGGTCTGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACT
** * * * * *
19452386 CCGTATGCCTAAGTCAGCCCATGAAACGAGCGTGTGGGCGCTCAGTCGACCGGAGAGGTAGAATG
66 CCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAAATG
* * * *
19452451 TGCAAGTCGGGGACC-GGCCGGTCCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTACTATT
131 TACAAGTC-GGGACCTGCCCAGTCCCCCCCTGCATGCTATCGATCCTGCTGCTGGTCCTACTATT
19452515 GT
195 GT
* * *
19452517 AACCCTCGGT-TCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAA
1 AACCCTCGGTCT-GATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGAC-TGGGAATGAA
*
19452580 CTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAAAA
64 CTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAAA
* *
19452645 TGTACAAGTCGGGACCTGCCCAGTCCCTCCCTGCATGCTGTCGATCCT
129 TGTACAAGTCGGGACCTGCCCAGTCCCCCCCTGCATGCTATCGATCCT
19452693 ACTACCGCAA
Statistics
Matches: 153, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
195 7 0.05
196 145 0.95
197 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
AACCCTCGGTCTGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAAATG
TACAAGTCGGGACCTGCCCAGTCCCCCCCTGCATGCTATCGATCCTGCTGCTGGTCCTACTATTG
T
Found at i:19453766 original size:158 final size:159
Alignment explanation
Indices: 19453457--19453954 Score: 536
Period size: 155 Copynumber: 3.2 Consensus size: 159
19453447 ACTCCATATG
**
19453457 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGATAACCCATGAAACGAGTGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
* * * * *
19453521 C-CAGCCGGAGAGGCAGAATGCGTAAG-CGGGGATCGGCCCGATCCCCTTGTGCGTGCTGTCGAT
65 CTGA-TCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGAT
* * * *
19453584 CTTGCTACTGTAACCCTC-AGTCCGGTCTGAT
129 CCTACTACCGCAACCCTCGA-TCCGGTCTGAT
* * *
19453615 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGC
* * * *
19453680 TGATCGGAGAGGCATAATGCGCT-AGCCAGGGATTGGCCCGATCCCCCTCTGCGTGCT-ACGGTC
66 TGATCGGAGAGGCAGAATGCG-TAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
* * * **
19453743 CTACTGCCACAAGCCTCGATCCGGT-TGGGG
130 CTACTACCGCAACCCTCGATCCGGTCT-GAT
* * * **
19453773 CTTAGACAT-GG-A--AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
* * * *
19453834 -TCGATCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCTGATCCCCC-CTGTGTGCTGTCGAT
65 CT-GATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGAT
*
19453897 CCTACTACCGCAACCCTCGATCCAGTCTGAT
129 CCTACTACCGCAACCCTCGATCCGGTCTGAT
*
19453928 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
19453955 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 47, Indels: 30
0.78 0.13 0.08
Matches are distributed among these distances:
154 11 0.04
155 116 0.42
156 2 0.01
157 3 0.01
158 115 0.41
159 31 0.11
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGC
TGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
TACTACCGCAACCCTCGATCCGGTCTGAT
Found at i:19453845 original size:155 final size:155
Alignment explanation
Indices: 19453456--19453919 Score: 404
Period size: 158 Copynumber: 3.0 Consensus size: 155
19453446 AACTCCATAT
* ** *
19453456 GCTTAGACATGGAATGAACTCCGTATGCCTAAGATAACCCATGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGG-A--AACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * ** ** *
19453521 C-CAGCCGGAGAGGCAGAATGCGTAAG-CGGGGATCGGCCCGATCCCCTTGTGCGTGCTGTCGAT
63 CTGA-TCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGATCCCC-CCTGCGTGCTGACGAT
* * *** *
19453584 CTTGCTACTGTAACCCTC-AGTCCGGTCT-GA
126 CCTACTACCACAACCCTCGA-TCCGGT-TGGG
* * * * * *
19453614 TCTTAGGC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGCACTGA
1 GCTTAGACAT-GG-A--AACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * *
19453678 GCTGATCGGAGAGGCATAATGCGCT-AGCCAGGGATTGGCCCGATCCCCCTCTGCGTGCT-ACGG
62 GCTGATCAGAGAGGCAGAATGCG-TAAGCCAAGGATCGGCCCGATCCCCC-CTGCGTGCTGACGA
* *
19453741 TCCTACTGCCACAAGCCTCGATCCGGTTGGG
125 TCCTACTACCACAACCCTCGATCCGGTTGGG
* **
19453772 GCTTAGACATGGAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG-TC
1 GCTTAGACATGGAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCT-
* * *
19453836 GATCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCTGATCCCCCCTGTGTGCTGTCGATCCTA
65 GATCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTGACGATCCTA
*
19453901 CTACCGCAACCCTCGATCC
130 CTACCACAACCCTCGATCC
19453920 AGTCTGATCT
Statistics
Matches: 252, Mismatches: 43, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
154 10 0.04
155 104 0.41
157 3 0.01
158 105 0.42
159 30 0.12
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCTG
ATCAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTGACGATCCTAC
TACCACAACCCTCGATCCGGTTGGG
Found at i:19453957 original size:26 final size:26
Alignment explanation
Indices: 19453928--19453980 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19453918 CCAGTCTGAT
*
19453928 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19453954 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19453980 C
1 C
19453981 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19453979 original size:888 final size:885
Alignment explanation
Indices: 19452447--19454910 Score: 3194
Period size: 888 Copynumber: 2.8 Consensus size: 885
19452437 GGAGAGGTAG
* * * *
19452447 AATGTGCAAGTCGGGGACCGG-CCGGTCCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTAC
1 AATGTGCAAGTCGAGGATCGGCCCGGT--CCCCCTTCGTGCTATCGATCCTGCTGCTGGTCCTGC
** * *
19452511 TATTGTAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAA
64 TACCGTAACCCTCGGTTCGATCTGATCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAA
* *
19452576 TGAACTCCGTATGCCTAA-ACCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GATCGGAGAG
129 TGAACTCCGTATGCCTAAGA-CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAG-TCGGAGAG
* ** * ** * *
19452639 GCAAAATGTACAAGTC-GGGACCTGCCC-AGT-CCCTCCCTGCATGCTGTCGATCCTACTACCGC
192 GCAGAATGCGCAAGTCGGGGACCGGCCCGA-TCCCCT-AGTGCGTGCTGTCGATCCTGCTACCGC
* * * * * * *
19452701 AACAGCCTCGATTCAGTCTGATCTGAGACTGGGACTGAACTCCGTATGCCTAAGTCAACCCACGA
255 AAC--CCTCG-TCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* ** * * * *
19452766 AACGAGCGTTTGGGTGCTGAGCCGACCGGAGAGGCATAATGC-ATAAGCCGGGGATCGGCCCGGT
317 AACGAGCGTGTGGGCACTGAGCCGATCGGAGAGGCATAATGCGCT-AGCCAGGGATCGGCCCGAT
* * * * * * *
19452830 CCCCCTCTGCGTGTTGTCGATCCCGCTGCCACAACCCTTGGGCCGACTAGGGCTTAGACATGGAA
381 CCCCCTCTGCGTGCT-ACGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG-A
* * *
19452895 TGAACTCCCTATGCCTAAGCCAACCTATGAAACGGGCGTGCGGGTGCTCTGTCGGTCGGAGAGGC
444 --AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCAGAGAGGC
* * *
19452960 AGAATGCGTAAGCCGAGGATCGG-CTCGATCCCCTATTTGTGCTATCGATCCTACTGTCGCAACC
507 AGAATGCGTAAGCCAAGGATCGGCCT-GATCCCCCATGTGTGCTATCGATCCTACTGTCGCAACC
* * * * * * *
19453024 CTCGGTCCAGTCTGATCCTAGATTAGGAATGAACTCCGTACGCTTAGACTGGGGTTGAACTCCGT
571 CTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGT
* * * *
19453089 ATGCCTAAGTCAACCCACAAAATGAGCGTACGGGTCGCTCAACCGGTCGAAGAGGCTGGCCAGAG
636 ATGCCTAAGTCAACCCACAAAATGAGCGTACGGG-CGCTCAACCGATAGAAGAGGCCGGCCAAAG
* * * * *
19453154 AGGCATAATATGCAAGTTAGGGATCAACCCGATCCCCCTCTACGTGCTGCCGTTCTCGCTGCCAG
700 AGGCATAATATACAAGTCAAGGATCAACCCGATCCCCCTCTACGTGCTGCCGATCTCGCT-ACAG
** * *
19453219 TCTTGTTGCCACAACCTTC-GATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
764 TCTTACTGCCACAACCTTCAG-TCCGGCTAGGGCTTAGACATGGAAAGAACTCCGTATGCCTAAG
* * * *
19453283 CAAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCTCAGTCAGCTGA-AGCGACAA
828 CAAACCCATGAAACGAGCGTGCGAGCACTCAGCCGACCTCAGTC-GCTCAGAGCGACAA
* *
19453341 AATGTGCAAGTCGAGGATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCTACTGCTGGTCCTGCT
1 AATGTGCAAGTCGAGGATCGGCCCGGTCCCCCTT-CGTGCTATCGATCCTGCTGCTGGTCCTGCT
* *
19453406 CCCGTAACCCTCGG-TCTGATCCGATCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAA
65 ACCGTAACCCTCGGTTC-GATCTGATCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAA
* * * *
19453470 TGAACTCCGTATGCCTAAGATAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGCCGGAGAGGC
129 TGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGC
* * * * * *
19453535 AGAATGCGTAAG-CGGGGATCGGCCCGATCCCCTTGTGCGTGCTGTCGATCTTGCTACTGTAACC
194 AGAATGCGCAAGTCGGGGACCGGCCCGATCCCCTAGTGCGTGCTGTCGATCCTGCTACCGCAACC
19453599 CTCAGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
259 CTC-GTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
* * *
19453664 TGTGTGGGCACTGAGCTGATCGGAGAGGCATAATGCGCTAGCCAGGGATTGGCCCGATCCCCCTC
323 CGTGTGGGCACTGAGCCGATCGGAGAGGCATAATGCGCTAGCCAGGGATCGGCCCGATCCCCCTC
* * * **
19453729 TGCGTGCTACGGTCCTACTGCCACAAGCCTCGATCCGGTTGGGGCTTAGACATGGAAACTCCCTA
388 TGCGTGCTACGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAACTCCCTA
*
19453794 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGATCAGAGAGGCAGAATGCGTAA
453 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGCGTAA
* * **
19453859 GCCAAGGATCGGCCTGATCCCCCCTGTGTGCTGTCGATCCTACTACCGCAACCCTCGATCCAGTC
518 GCCAAGGATCGGCCTGATCCCCCATGTGTGCTATCGATCCTACTGTCGCAACCCTCGATCCAGTC
19453924 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
583 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* *
19453989 ACCCACAAAATGAGCGTACGGGCACTCAGCCGATAGAAGAGGCCGGCCAAAGAGGCATAATATAC
648 ACCCACAAAATGAGCGTACGGGCGCTCAACCGATAGAAGAGGCCGGCCAAAGAGGCATAATATAC
* *
19454054 AAGTCAAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCTCGCTACGGTCTTACTGCCACAA
713 AAGTCAAGGATCAACCCGATCCCCCTCTACGTGCTGCCGATCTCGCTACAGTCTTACTGCCACAA
* *
19454119 CTTTCAGTCCGGCTAGGGTTTAGACATGGAAAGAACTCCGTATGCCTAAGCAAACCCATGAAACG
778 CCTTCAGTCCGGCTAGGGCTTAGACATGGAAAGAACTCCGTATGCCTAAGCAAACCCATGAAACG
* * * * *
19454184 AGTGTGCTAGCACTCAGCCGACCTCAGTCGGTCAGAGCGATAG
843 AGCGTGCGAGCACTCAGCCGACCTCAGTCGCTCAGAGCGACAA
* * * * *
19454227 AATGTGCAAGTCGAGGATCGACCCGATCCCTCCTGT-GTGCTACCGATCCTGCTACTGGTCTTGC
1 AATGTGCAAGTCGAGGATCGGCCCGGTCCC-CCT-TCGTGCTATCGATCCTGCTGCTGGTCCTGC
* *
19454291 TACCGCAACACTCGGTTCGATCTGATCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAA
64 TACCGTAACCCTCGGTTCGATCTGATCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAA
* * * *
19454356 TGCACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAGCCAGTCGGAGAGGC
129 TGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGC
*
19454421 AGAATGCGCAAGTCGGGGACCGGCCCGATCCCTCCAGTGCGTGCTGTCGATCCTGCTACCGCAAC
194 AGAATGCGCAAGTCGGGGACCGGCCCGATCCC-CTAGTGCGTGCTGTCGATCCTGCTACCGCAAC
* *
19454486 CCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGGCAACCCATGAAATGA
258 CCTC-GTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
* * * *
19454551 GCGTGCGGGCACTGAGCCGATCGGAGAGGTATAATGCGCTAGCCAGGGATCGACTCGATCCCCCT
322 GCGTGTGGGCACTGAGCCGATCGGAGAGGCATAATGCGCTAGCCAGGGATCGGCCCGATCCCCCT
*
19454616 CTGCGTGCTACCCGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAACTCCC
387 CTGCGTGCTA-CGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAACTCCC
* * * * * ** *
19454681 TATGCCTAAGCCAACCCATGAAACCGACATGTGGGCGCTCAACCGGTCAGAGTGGCAGAATGCGT
451 TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGCGT
* * * * ** * * * * *
19454746 AAGCTAAGGATCGACCCGGTCCCCGTTGCGTGTTACCGATCCTCCTGTCGTAACCCTC-AGTCC-
516 AAGCCAAGGATCGGCCTGATCCCCCATGTGTGCTATCGATCCTACTGTCGCAACCCTCGA-TCCA
* * *
19454809 GATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGTGATGAACTTCATATGCCTAA
580 G-TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * *
19454874 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
644 GTCAACCCACAAAATGAGCGTACGGGCGCTCAACCGA
19454911 CCAGAGAGGT
Statistics
Matches: 1371, Mismatches: 178, Indels: 47
0.86 0.11 0.03
Matches are distributed among these distances:
885 3 0.00
886 280 0.20
887 103 0.08
888 365 0.27
889 246 0.18
890 1 0.00
891 36 0.03
892 117 0.09
893 11 0.01
894 197 0.14
895 12 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (885 bp):
AATGTGCAAGTCGAGGATCGGCCCGGTCCCCCTTCGTGCTATCGATCCTGCTGCTGGTCCTGCTA
CCGTAACCCTCGGTTCGATCTGATCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAATG
AACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAG
AATGCGCAAGTCGGGGACCGGCCCGATCCCCTAGTGCGTGCTGTCGATCCTGCTACCGCAACCCT
CGTCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT
GTGGGCACTGAGCCGATCGGAGAGGCATAATGCGCTAGCCAGGGATCGGCCCGATCCCCCTCTGC
GTGCTACGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAACTCCCTATGC
CTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGCGTAAGCC
AAGGATCGGCCTGATCCCCCATGTGTGCTATCGATCCTACTGTCGCAACCCTCGATCCAGTCTGA
TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
CACAAAATGAGCGTACGGGCGCTCAACCGATAGAAGAGGCCGGCCAAAGAGGCATAATATACAAG
TCAAGGATCAACCCGATCCCCCTCTACGTGCTGCCGATCTCGCTACAGTCTTACTGCCACAACCT
TCAGTCCGGCTAGGGCTTAGACATGGAAAGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGC
GTGCGAGCACTCAGCCGACCTCAGTCGCTCAGAGCGACAA
Found at i:19454868 original size:26 final size:26
Alignment explanation
Indices: 19454817--19454869 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19454807 CCGATCTGAT
*
19454817 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
19454843 CTTAGACTGGTG-ATGAACT-TCATATG
1 CTTAGACTGG-GAATGAACTCT-ATATG
19454869 C
1 C
19454870 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:19455912 original size:159 final size:158
Alignment explanation
Indices: 19455556--19455957 Score: 409
Period size: 159 Copynumber: 2.5 Consensus size: 158
19455546 CTGTCCGTAC
* * * *
19455556 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
19455621 CCGATCGAAGAGGAAGAATGCGCAAGCTAAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGATCGAAGAGGCAGAATGCGAAAGCTAAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGACCC
* * * *
19455686 TACTGCCGCAACCCTCGGTCCGGTCCAA
131 CACTGCCACAACCCTCGGTCAGCTCCAA
* *** * *
19455714 TCTTAGAC-TGGGAATGAACTCCGTATGCATAATTTAACCCACGAAACGAACGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
19455778 GCCGATCGAAGAGGCAGAATGC-AAAG-TCAGGGATCGGC-CTGGTCCCCCTCTGTGTTCTGCTT
65 GCCGATCGAAGAGGCAGAATGCGAAAGCT-AAGGATCGACTC-GGTCCCCC-CTGCGTGCTG-TC
* * ***
19455840 GGCCCCACTGCCACAACCCTCAGTTCAGCT-GGG
126 GACCCCACTGCCACAACCCTC-GGTCAGCTCCAA
* * * * *
19455873 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
19455938 CCGGTCGGAGAGGCAGAATG
66 CCGATCGAAGAGGCAGAATG
19455958 TGCAAGCCAG
Statistics
Matches: 197, Mismatches: 40, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
156 2 0.01
157 20 0.10
158 81 0.41
159 88 0.45
160 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCGAAAGCTAAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGACCC
CACTGCCACAACCCTCGGTCAGCTCCAA
Found at i:19456068 original size:26 final size:26
Alignment explanation
Indices: 19456032--19456084 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19456022 TCGGTCCGAT
19456032 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
19456058 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19456084 C
1 C
19456085 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19456787 original size:26 final size:26
Alignment explanation
Indices: 19456749--19456804 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
19456739 GGCTCAAAAT
**
19456749 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCATATG
19456775 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19456801 CTTA
1 CTTA
19456805 TGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19457135 original size:159 final size:159
Alignment explanation
Indices: 19456772--19457240 Score: 509
Period size: 158 Copynumber: 3.0 Consensus size: 159
19456762 TGAACTCTTT
* *
19456772 ATGCTTAGACATGGAATGAACTCCATATGCTTATGCCAACCCACGAAACGAGCGTGCGGGCGCTC
1 ATGCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
19456837 AGCCGACCGGAGAGGTAGAATGCGTAAG-TCAGGGATCGGCCCGATCCTCCCTGTGTGTTGTCGA
66 AGCCGGCCGGAGAGGCAGAATGCGCAAGCT-AGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGA
* *
19456901 TCCCGCTGCCACAACCCTCGGTCATGTCTG
130 TCCCGCTACCACAACCCTCGGTCATGGCTG
* * * * * * *
19456931 AT-CTTGGAC-TAGGAATGAACTCCGTATGCATAAGTCAACTCACGAAATGAGCGTGCAGGAGCT
1 ATGCTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
19456994 GAGCCGGTCGAAGAGGCATAATGCGCAAGCTAGGGATTGGCCCGATCCCCCTCTGCGTGCTGCCG
65 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCG
* *
19457059 GTCCCGCTACCACAACCCTCGGT-TTGGCTG
129 ATCCCGCTACCACAACCCTCGGTCATGGCTG
* * *
19457089 -TGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCT
1 AT-GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * **
19457153 CAGCCAGCCGGAGAGGCAGAATGTGCAAGC-CGAGGATCGGCCCGGTCCCCCCTGCGTACTATCG
65 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCTAG-GGATCGGCCCGATCCCCCCTGCGTGCTGCCG
* * *
19457217 ATCCTGCTATCGCAACCCTCGGTC
129 ATCCCGCTACCACAACCCTCGGTC
19457241 CAATCCAATC
Statistics
Matches: 252, Mismatches: 50, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 125 0.50
159 124 0.49
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
ATGCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGAT
CCCGCTACCACAACCCTCGGTCATGGCTG
Found at i:19457269 original size:24 final size:26
Alignment explanation
Indices: 19457242--19457292 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19457232 CCCTCGGTCC
*
19457242 AATCCA-AT-CTTAGATTGGGAATGA
1 AATCCATATGCTTAGACTGGGAATGA
*
19457266 AATCCATATGCTTAGACTGGGGATGA
1 AATCCATATGCTTAGACTGGGAATGA
19457292 A
1 A
19457293 CTCTGTATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.26
25 2 0.09
26 15 0.65
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (26 bp):
AATCCATATGCTTAGACTGGGAATGA
Found at i:19457982 original size:26 final size:26
Alignment explanation
Indices: 19457944--19457996 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19457934 GGCTTAAACT
* * *
19457944 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
19457970 CTTAGAC-GCGGAAAGAACTCCGTATG
1 CTTAGACTG-GGAAAGAACTCCGTATG
19457996 C
1 C
19457997 CTAAGCTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:19458164 original size:26 final size:26
Alignment explanation
Indices: 19458128--19458177 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19458118 CTGGTCTGAT
19458128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
19458154 CTTAGATTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19458178 CGCTGCCGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19460468 original size:26 final size:26
Alignment explanation
Indices: 19460418--19460470 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19460408 CCAGTCTGAT
**
19460418 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19460444 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19460470 C
1 C
19460471 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19461623 original size:153 final size:155
Alignment explanation
Indices: 19461151--19461729 Score: 622
Period size: 156 Copynumber: 3.8 Consensus size: 155
19461141 TCTTAGATTG
* ** ** *
19461151 GGAATGAACTCCGTATGCCTAACCCAACTTACGAAACGAGCGTGCGGGCACTCAATCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAG
* * * * * **
19461216 AGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTTACGTGCTGTCGATCCTACTACCGTA
66 AGGCAGAATGCGCAAGC-CGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC-ACTACCACA
* **
19461281 ACCCTCGGTCCGGTCT-GATCTTAGAC-T
129 ACCCTC-GTCC-GACTGGGGCTTAGACAT
* * * * * ** * * *
19461308 CGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTGAGCC-GTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAG
* * * * *
19461372 AGGAATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCG-TCCCGCTGCCAC
66 AGGCAGAATGCGCAAGCC-GGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGAT-CCACTACCAC
* *
19461436 AACCCTGGTCCGGCTGGGGCTTAGACAT
128 AACCCTCGTCCGACTGGGGCTTAGACAT
* * **
19461464 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAG-GTGCGGGTGCTCAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAG
* * *
19461528 AGGCAGAATGTGCAAGCCGGGATCAG-TCGATCCCCCCTGCGTGCTGTCGATCCACTACCACAAC
66 AGGCAGAATGCGCAAGCCGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCACTACCACAAC
19461592 CCTCGTCCGACTGGGGCTTAGACAT
131 CCTCGTCCGACTGGGGCTTAGACAT
* * *
19461617 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC--GTGTGCGGGCACTCAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAG
*
19461680 AGGCAGAATGCG-AA-CAGGGATC-GCCCGGTCCCCCCTGCGTGCTGTCGATC
66 AGGCAGAATGCGCAAGCCGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
19461730 TTTGCTGCCG
Statistics
Matches: 353, Mismatches: 60, Indels: 25
0.81 0.14 0.06
Matches are distributed among these distances:
149 1 0.00
150 31 0.09
151 3 0.01
152 31 0.09
153 81 0.23
154 12 0.03
155 32 0.09
156 106 0.30
157 56 0.16
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (155 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAG
AGGCAGAATGCGCAAGCCGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCACTACCACAAC
CCTCGTCCGACTGGGGCTTAGACAT
Found at i:19461753 original size:153 final size:154
Alignment explanation
Indices: 19461142--19461787 Score: 587
Period size: 153 Copynumber: 4.2 Consensus size: 154
19461132 TGCTCAAAAT
* * ** **
19461142 CTTAGATTGGGAATGAACTCCGTATGCCTAACCCAACTTACGAAACGAGCGTGCGGGCACTCAAT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGCGTGCGGGCACTCAGC
* * * * * *
19461207 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTTACGTGCTGTCGATCCT
64 CGGCCGGAGAGGCAGAATGCGCAAGC-GGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCC
** *
19461272 ACTACCGTAACCCTCGGTCCGGTCT-GAT
128 ACTACCACAACCCTCGGTCC-G-CTGGAG
* * * * * ** *
19461300 CTTAGACTCGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTGAGCC
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGCGTGCGGGCACTCAGCC
* * * * *
19461365 -GTCGAAGAGGAATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCG-TCCC
65 GGCCGGAGAGGCAGAATGCGCAAG-CGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATCCC
* * *
19461428 GCTGCCACAACCCT-GGTCCGGCTGGGG
128 ACTACCACAACCCTCGGTCC-GCTGGAG
* * **
19461455 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAG-GTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGCGTGCGGGCACTCAGC
* * * *
19461519 CGGCCGGAGAGGCAGAATGTGCAAGCCGGGATCAG-TCGATCCCCCCTGCGTGCTGTCGAT-CCA
64 CGGCCGGAGAGGCAGAATGCGCAAGCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCCA
*
19461582 CTACCACAACCCTC-GTCCGACTGGGG
129 CTACCACAACCCTCGGTCCG-CTGGAG
* *
19461608 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GTGTGCGGGCACTCAGTC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGCGTGCGGGCACTCAGCC
* * ***
19461672 GACCGGAGAGGCAGAATGCG-AA-CAGGGATC-GCCCGGTCCCCCCTGCGTGCTGTCGATCTTTG
65 GGCCGGAGAGGCAGAATGCGCAAGCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC-CCA
* ** * * *
19461734 CTGCCGTAACCCTCGGTCCGGTCCGAT
129 CTACCACAACCCTCGGTCCGCT-GGAG
19461761 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
19461788 TTAGACATGG
Statistics
Matches: 405, Mismatches: 68, Indels: 35
0.80 0.13 0.07
Matches are distributed among these distances:
149 1 0.00
150 30 0.07
151 3 0.01
152 45 0.11
153 111 0.27
154 11 0.03
155 36 0.09
156 106 0.26
157 55 0.14
158 7 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (154 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGCGTGCGGGCACTCAGCCG
GCCGGAGAGGCAGAATGCGCAAGCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCCACT
ACCACAACCCTCGGTCCGCTGGAG
Found at i:19461790 original size:26 final size:26
Alignment explanation
Indices: 19461761--19461813 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19461751 CCGGTCCGAT
19461761 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19461787 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19461813 C
1 C
19461814 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19461957 original size:176 final size:178
Alignment explanation
Indices: 19461607--19461963 Score: 544
Period size: 176 Copynumber: 2.0 Consensus size: 178
19461597 TCCGACTGGG
* * *
19461607 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGTGTGCGGGCACTCAGTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGCACTCAGTC
* *
19461672 GACCGGAGAGGCAGAATGCGAACAGGGATCGCCCGGTCCCCCCTGCGTGCTGTCGATCTTTGCTG
66 -ACCGGAGAGGCAGAATGCGAACAGGGATCGCCCGATCCCCCCTGCGTGCTGTCGATCTCTGCTG
* *
19461737 CCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTAT
*
19461786 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGC-CTCAG-C
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGCACTCAGTC
*
19461849 -TCGGAGAGGCAGAATGC-AAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC-CTGC
66 ACCGGAGAGGCAGAATGCGAA--CAGGGATCG-CCCGATCCCCCCTGCGTGCTGTCGATCTCTGC
* *
19461911 TGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTAT
128 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTAT
19461962 GC
1 GC
19461964 CTAAGTCAAC
Statistics
Matches: 164, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
174 2 0.01
175 16 0.10
176 61 0.37
177 27 0.16
178 5 0.03
179 53 0.32
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (178 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGCACTCAGTC
ACCGGAGAGGCAGAATGCGAACAGGGATCGCCCGATCCCCCCTGCGTGCTGTCGATCTCTGCTGC
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTAT
Found at i:19462070 original size:150 final size:149
Alignment explanation
Indices: 19461787--19462262 Score: 530
Period size: 150 Copynumber: 3.2 Consensus size: 149
19461777 ACTCCGTATG
19461787 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC--GC-CTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
19461849 TCGGAGAGGCAGAATGCAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTG
66 -CGGAGAGGCAGAATGCAAGCC-GGGATCG-CCCGGTCCCCCTCTGCGTGCT-TCGATCCTGCTG
*
19461913 CTGCAACCCTCGGTCCGGTCTGAT
127 CCGCAACCCTCGGTCC-GTCTGAT
* *
19461937 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
19462001 CCGGTCAGAGGCATAATGCAAGCCGGGATCG-CCGGTCCCCCTCTGCGTGCTTCGGTCC-CCTGC
65 CCGG--AGAGGCAGAATGCAAGCCGGGATCGCCCGGTCCCCCTCTGCGTGCTTCGATCCTGCTGC
* * **
19462064 CACAACCCTC-ATCCG-CTGGGG
128 CGCAACCCTCGGTCCGTCT-GAT
* * * *
19462085 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGG-GCTCACC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA--
* * *
19462149 GCCGGAGAGGCAGAATGTGCAAGCCGAGGATTGGCCCGGTCCCCCTGTGC-TG--TCGATCCTGT
64 GCCGGAGAGGCAGAA--TGCAAGCCG-GGA-TCGCCCGGTCCCCCTCTGCGTGCTTCGATCCTGC
*
19462211 TGTCGCAACCCTCGGTCCGTCTGAT
125 TGCCGCAACCCTCGGTCCGTCTGAT
*
19462236 CTTAGA-TTGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
19462263 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 30, Indels: 39
0.80 0.09 0.11
Matches are distributed among these distances:
147 15 0.05
148 51 0.18
149 27 0.10
150 77 0.28
151 47 0.17
152 30 0.11
153 12 0.04
154 17 0.06
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (149 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGAGAGGCAGAATGCAAGCCGGGATCGCCCGGTCCCCCTCTGCGTGCTTCGATCCTGCTGCCGC
AACCCTCGGTCCGTCTGAT
Found at i:19462266 original size:26 final size:26
Alignment explanation
Indices: 19462236--19462288 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19462226 TCCGTCTGAT
*
19462236 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19462262 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19462288 C
1 C
19462289 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19462301 original size:475 final size:481
Alignment explanation
Indices: 19461300--19462325 Score: 1284
Period size: 475 Copynumber: 2.1 Consensus size: 481
19461290 CCGGTCTGAT
* * * * * *
19461300 CTTAGAC-TCGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT--GCGCGCTCAG-
* * *
19461364 CGTCGAAGAGGAATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGTCCCG
63 CGTCGAAGAGGAAGAAT-CGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGTCCCG
*
19461429 CTGCCACAACCCTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
127 CTGCCACAACCCTGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * *
19461494 ATGAAACGAGGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCCGGGATCAGTCGAT
192 ACGAAACGAGGTGCGGGCGCTCAGCCGGCC-GAGAGGCAGAA-GTGCAAGCCGGGATCAGCCGAT
*
19461559 CCCCCCTGCGTGCTGTCGATCCACTACCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGA
255 CCCCCCTGCGTGCTGTCGATCCACTACCACAACCCTCATCCGACTGGGGCTTAGACATGGAATGA
* * * *
19461624 ACTCCGTATGCCTAAGCCAACCCACGAAACGTGTGCGGGCACTCAGTCGACCGGAGAGGCAGAAT
320 ACTCCCTATGCCTAAGCCAACCCACGAAACGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAAT
* *
19461689 GCGAACAGGGATCGCCCGGTCCCCCCTGCGTGCTGTCGATCTTTGCTGCCGTAACCCTCGGTCCG
385 GCGAACAGGGATCGCCCGGTCCCCCCT-CGTGCTGTCGATCTCTGCTGCCGCAACCCTCGGTCCG
19461754 GTCCGATCTTAGACTGGGAATGAACTCCGTATG
449 GTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
19461787 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGC-CTCAGC-T
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGCGCTCAGCGT
* * * *
19461850 CGGAGAGGCAGAAT-GCAAGCCAGGGATC-GACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCT
66 CGAAGAGGAAGAATCGCAAGCCAGGGATCAG-CCCGATCCCCCTCTGCGTGCTGCCG-TCCCGCT
** * * *
19461912 GCTGCAACCCTCGGTCCGGTCT-GATCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACC
129 GCCACAACCCT-GGTCCGG-CTGGAGCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACC
* * * *
19461975 CACGAAACGAGCGTGCGGGCGCTGAGCCGGTC-AGAGGCATAA-TGCAAGCCGGGATC-GCCGGT
191 CACGAAACGAG-GTGCGGGCGCTCAGCCGGCCGAGAGGCAGAAGTGCAAGCCGGGATCAGCCGAT
* * *
19462037 CCCCCTCTGCGTGCT-TCGGTCCCCTGCCACAACCCTCATCCG-CTGGGGCTTAGACATGGAATG
255 CCCCC-CTGCGTGCTGTCGATCCACTACCACAACCCTCATCCGACTGGGGCTTAGACATGGAATG
* *
19462100 AACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGG-GCTCA-CCG-CCGGAGAGGCAG
319 AACTCCCTATGCCTAAGCCAACCCACGAAA--CGCGTACGGGCACTCAGCCGACCGGAGAGGCAG
* * * * *
19462162 AATGTGCAAGCCGAGGATTGGCCCGGT-CCCCCT-GTGCTGTCGATC-CTGTTGTCGCAACCCTC
382 AATGCG-AA-CAG-GGA-TCGCCCGGTCCCCCCTCGTGCTGTCGATCTCTGCTGCCGCAACCCTC
* *
19462224 GGTCC-GTCTGATCTTAGATTGGGAATGAACTCCGTATG
443 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
19462262 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTCAGC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GCGCTCAGC
19462326 CGACCAGAGA
Statistics
Matches: 474, Mismatches: 48, Indels: 44
0.84 0.08 0.08
Matches are distributed among these distances:
474 1 0.00
475 81 0.17
476 37 0.08
477 72 0.15
478 38 0.08
479 39 0.08
480 21 0.04
481 49 0.10
482 51 0.11
483 31 0.07
484 1 0.00
485 3 0.01
486 3 0.01
487 7 0.01
488 40 0.08
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (481 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGCGCTCAGCGT
CGAAGAGGAAGAATCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGTCCCGCTGC
CACAACCCTGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGAGGTGCGGGCGCTCAGCCGGCCGAGAGGCAGAAGTGCAAGCCGGGATCAGCCGATCCCCCC
TGCGTGCTGTCGATCCACTACCACAACCCTCATCCGACTGGGGCTTAGACATGGAATGAACTCCC
TATGCCTAAGCCAACCCACGAAACGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCGAAC
AGGGATCGCCCGGTCCCCCCTCGTGCTGTCGATCTCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19464247 original size:26 final size:26
Alignment explanation
Indices: 19464211--19464264 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
19464201 CTAGTCCGAT
19464211 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19464237 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
19464263 CT
1 CT
19464265 GTCGGTCCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19464463 original size:249 final size:249
Alignment explanation
Indices: 19464011--19464477 Score: 586
Period size: 249 Copynumber: 1.9 Consensus size: 249
19464001 CCCCCGCTGC
19464011 ATGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
1 ATGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
* * * * * ** *
19464076 ATGCCTAAGCCTACTCATGAAACGGGTGTGCGGGCGCTCAGCCAGTCAGAGAGGCAGAATGCGTA
66 ATGCCTAAGCCTACCCACGAAACGAGCGTACGGGCGCTCAGCCAACCAGAGAGGCAGAATGCGAA
* * * * *
19464141 GGCTGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCAATCCTGCTATCACAGCCCTAGGTCTAGT
131 GGCTAGGAATCGGCCTGGTCCCCCCTGCGTGCTGCCAATCCTGCTACCACAACCCTAGGTCGAGT
19464206 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCTT
196 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCTT
* * * * *
19464260 ATGCTGTCGGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGT
1 ATGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
*
19464325 ATGCCTAAGCCTACCCACG-AACGAGCGTACGGGCTGCTCAGCGAACC-GAAGAGGCAGAATGCG
66 ATGCCTAAGCCTACCCACGAAACGAGCGTACGGGC-GCTCAGCCAACCAG-AGAGGCAGAATGCG
* * * * * * * *
19464388 CAAGTC-AGGAAT-GG-CTCGGTCCTTCCCTGTGTGCTGTCGATCTTGCTACCGCAACCCTCGGT
129 -AAGGCTAGGAATCGGCCT-GGTCC-CCCCTGCGTGCTGCCAATCCTGCTACCACAACCCTAGGT
*
19464450 CCGA-TCCGATCTTAGATTGGGAATGAAC
191 -CGAGTCCGATCTTAGACTGGGAATGAAC
19464478 CCCGTATCTT
Statistics
Matches: 184, Mismatches: 28, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
247 2 0.01
248 20 0.11
249 157 0.85
250 5 0.03
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (249 bp):
ATGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
ATGCCTAAGCCTACCCACGAAACGAGCGTACGGGCGCTCAGCCAACCAGAGAGGCAGAATGCGAA
GGCTAGGAATCGGCCTGGTCCCCCCTGCGTGCTGCCAATCCTGCTACCACAACCCTAGGTCGAGT
CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCTT
Found at i:19464648 original size:185 final size:184
Alignment explanation
Indices: 19464303--19464669 Score: 450
Period size: 185 Copynumber: 2.0 Consensus size: 184
19464293 TGGCTGGGGC
* * * *
19464303 TTAGACATGGAATGAACTCCGTATGCCTAAGCCTACCCACGAACGAGCGTACGGGCTGCTCAGCG
1 TTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACGAACGAGCGTACGGGCTGCTCAGCC
* ** * * ** * * *
19464368 AACCGAAGAGGCAGAATGCGCAAGTCAGGAATGGCTCGGTCCTTCCCTGTGTGCTGTCGATCTTG
66 AACCGAAGAGGCAGAATGCACAAGTCAGGAATAACCCGATCCCCCCCTGCGTGCTGTCGATCCTA
* *
19464433 CTACCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACCCCGTATCT
131 CTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGTATCT
* **
19464487 TTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCTCGAAACGAGCGTGTGGGC-GCTCAGC
1 TTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACG-AACGAGCGTACGGGCTGCTCAGC
* * ** *
19464551 CAACCGGAGAGGC-GAAATGCATAAGTTGGGGATCAACCCGATCCCCCCCTGCGTGCTGTCGATC
65 CAACCGAAGAGGCAG-AATGCACAAGTCAGGAAT-AACCCGATCCCCCCCTGCGTGCTGTCGATC
* * *
19464615 CTACTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
128 CTACTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGTAT
19464670 GCCTAAGTCA
Statistics
Matches: 153, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
183 1 0.01
184 68 0.44
185 84 0.55
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
TTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACGAACGAGCGTACGGGCTGCTCAGCC
AACCGAAGAGGCAGAATGCACAAGTCAGGAATAACCCGATCCCCCCCTGCGTGCTGTCGATCCTA
CTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGTATCT
Found at i:19464743 original size:159 final size:159
Alignment explanation
Indices: 19464487--19464988 Score: 426
Period size: 159 Copynumber: 3.2 Consensus size: 159
19464477 CCCCGTATCT
* * ** ** *
19464487 TTAGACAT-GGAATAAACTCCGTATGCCTAAGACAACCCTCGAAACGAGCGTGTGGGCGCTCAGC
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAAC
* ** * * * * *
19464551 C-AACCGGAGAGGC-GAA-ATGCATAAGTTGGGGATCAACCCGATCCCCCCCTGCGTGCTGTCGA
65 CGGA-CAAAGAGGCAGAATACGCA-AA-TCGAGGATCAGCCCGGTCCCCCCCTGCGTGCTGTCGA
*
19464613 TCCTACTACCACAACCCTCGGTCTGA-TCTGATC
127 TCCTACTACCACAACCCTCGGTCCGATTC-GATC
* * * * *
19464646 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAAGGAACGAGCGTACGGGCGTTCAATC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAACC
* ** * ** *
19464711 GGTCGGAGAGGCATAATACGCAAATCGAGGATCAGCTTGGTCCCCCTCC-GCGTGCTGTCGGTCC
66 GGACAAAGAGGCAGAATACGCAAATCGAGGATCAGCCCGGTCCCCC-CCTGCGTGCTGTCGATCC
* * * * **
19464775 CATTACCACAACCCTTGGTCCGATTGGGGC
130 TACTACCACAACCCTCGGTCCGATTCGATC
* * * * *
19464805 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGGGCTCAAC
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAAC
* * * * * *
19464869 CGGACAAAGAGGGAGAATGCGCAAGTCGGGGATCAGCCCGGT-CCCCCTTGCGTGCTGCCGATCC
65 CGGACAAAGAGGCAGAATACGCAAATCGAGGATCAGCCCGGTCCCCCCCTGCGTGCTGTCGATCC
* ** * *
19464933 TGCTGTCGCAACCCTCGATCCGATTCGATC
130 TACTACCACAACCCTCGGTCCGATTCGATC
*
19464963 TTAAACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
19464989 TTAGACGTGG
Statistics
Matches: 269, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 59 0.22
159 196 0.73
160 8 0.03
161 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAACC
GGACAAAGAGGCAGAATACGCAAATCGAGGATCAGCCCGGTCCCCCCCTGCGTGCTGTCGATCCT
ACTACCACAACCCTCGGTCCGATTCGATC
Found at i:19464991 original size:26 final size:26
Alignment explanation
Indices: 19464962--19465014 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19464952 CCGATTCGAT
*
19464962 CTTAAAC-TGGGAATGAACTCCGTATG
1 CTTAAACGT-GGAATAAACTCCGTATG
*
19464988 CTTAGACGTGGAATAAACTCCGTATG
1 CTTAAACGTGGAATAAACTCCGTATG
19465014 C
1 C
19465015 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACGTGGAATAAACTCCGTATG
Found at i:19465491 original size:26 final size:26
Alignment explanation
Indices: 19465462--19465514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19465452 CCGGTCTGAT
*
19465462 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19465488 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19465514 C
1 C
19465515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19472025 original size:11 final size:11
Alignment explanation
Indices: 19472009--19472033 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
19471999 CGGTTAGGCT
19472009 CTCCGGTGATG
1 CTCCGGTGATG
19472020 CTCCGGTGATG
1 CTCCGGTGATG
19472031 CTC
1 CTC
19472034 TGACGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.28
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:19472639 original size:26 final size:26
Alignment explanation
Indices: 19472610--19472662 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19472600 CCGGTCCGAT
*
19472610 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19472636 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19472662 C
1 C
19472663 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19474106 original size:26 final size:26
Alignment explanation
Indices: 19474068--19474120 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19474058 GGCTCAAAAT
19474068 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19474094 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19474120 C
1 C
19474121 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19474288 original size:26 final size:26
Alignment explanation
Indices: 19474252--19474303 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19474242 CCAATCTGAT
*
19474252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19474278 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
19474304 GCCAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19474783 original size:159 final size:158
Alignment explanation
Indices: 19474457--19474926 Score: 436
Period size: 159 Copynumber: 3.0 Consensus size: 158
19474447 TTGGTCCGAC
* * * * *
19474457 TGGGGCTTAGACATGGGATGAACT-CCGTATGCCTAAGCCAACCTACGAAA-TGGTGTGCGGGTG
1 TGGGGCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTG
* * ** * *
19474520 CTCAGCTC-ACCGGAGAGGTAGAATGCGTAAGCTAGGGATCGGCCC-GATCCTCCCCTACGTGCT
65 CTCAGC-CAACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAG-TCC-CCCCTGCGTGCT
* * * * * * *
19474583 ATCGATCCTGC-AGTCACAATCATTGG-TCTGAT
127 GTCGATCCCGCTA-CCACAACCCTCGGTTCAG-T
** ** *
19474615 CCGATCTTAGAC-TGTGAATGAACT-CCGTATGCCTAAGTCAACCCATGAAAC-GAGCGTGCGGG
1 TGGGGCTTAGACATG-GAATGAACTGCC-TATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGG
* * * * *
19474677 TGCTGAGCTAACCGGAGAGGCATAATGTGCAAGCCGGGGATTGGCTCAGTCCCCCTCTGCGTGCT
63 TGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCC-CTGCGTGCT
*
19474742 GTCGGTCCCGCTACCACAACCCTCGGTTCAGT
127 GTCGATCCCGCTACCACAACCCTCGGTTCAGT
*
19474774 TGGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCATGAAACAGGCGTGTGGGTGC
1 TGGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGC
** * * * *
19474839 TCAGCCGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTGGGTGCTGTCG
66 TCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCGTGCTGTCG
* * *
19474904 ATCCTGCTGCCGCAACCCTCGGT
131 ATCCCGCTACCACAACCCTCGGT
19474927 CCGATCTGAT
Statistics
Matches: 252, Mismatches: 49, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 74 0.29
159 166 0.66
160 10 0.04
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
TGGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGC
TCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCGTGCTGTCG
ATCCCGCTACCACAACCCTCGGTTCAGT
Found at i:19474978 original size:26 final size:26
Alignment explanation
Indices: 19474937--19474989 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19474927 CCGATCTGAT
19474937 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
19474963 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
19474989 C
1 C
19474990 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:19475695 original size:26 final size:26
Alignment explanation
Indices: 19475657--19475709 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19475647 GGCTCAAAAT
19475657 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19475683 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19475709 C
1 C
19475710 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19477051 original size:159 final size:156
Alignment explanation
Indices: 19476757--19477259 Score: 580
Period size: 159 Copynumber: 3.2 Consensus size: 156
19476747 ACTTCGTATG
* * *
19476757 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAGACAAGCGTGTGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
19476822 CAACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTTCCCCCCTGCGTGCTGTCGATCC
64 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGG-TCCCCCCTGCGTGCTGTCGATCC
19476887 TGCTGCTACAACCCTCGGTCCGGTCTGAT
128 TGCTGCTACAACCCTCGGTCCGGTCTGAT
* * *
19476916 CTTAGGCTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
19476981 CGACCGAAGAGGCATAATGCACAAGCTGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCCGGTCC
64 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
* * * **
19477046 CGCTGCCACAACCCTCGGTCCAG-CTGGGG
128 TGCTGCTACAACCCTCGGTCCGGTCT-GAT
* * *
19477075 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGC-GGCAGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGC-GCTCAG
* * * * * *
19477139 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGGCCAGTCCCCCCTGCGTGCTATCGATCC
63 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
19477204 TACTG-TCGCAACCCTCGGTCCGGTCCGAT
128 TGCTGCT-ACAACCCTCGGTCCGGTCTGAT
*
19477233 CTTAGACTAGGAATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
19477260 TTAGACTGGG
Statistics
Matches: 287, Mismatches: 48, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
157 1 0.00
158 68 0.24
159 217 0.76
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
ACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGC
TGCTACAACCCTCGGTCCGGTCTGAT
Found at i:19477994 original size:26 final size:26
Alignment explanation
Indices: 19477956--19478008 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19477946 GCCTCAAAAT
*
19477956 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19477982 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19478008 C
1 C
19478009 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19478276 original size:159 final size:158
Alignment explanation
Indices: 19477982--19478485 Score: 527
Period size: 159 Copynumber: 3.2 Consensus size: 158
19477972 ACTCTGTATG
* **
19477982 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * ** ** * *
19478047 CGGCCAAAGAGATAGAATGCGCAAGCTAGGGATCAGCCCGGTCCCCCCTTGCGTGCTG-TCAATC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCCGTCCCCCC-TGCGTGCTGCT-GATC
19478111 CTGCTGCCACAACCCTCGGTCTGGTCTGAT
129 CTGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * * *
19478141 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCCCGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
19478205 CCAACTGAAGAGGCATAATGCGCAAGCCGGGGATC-GCCCCGATCCCCCTCTGCGTGCTGCTGGT
65 TCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCCG-TCCCCC-CTGCGTGCTGCTGAT
* * **
19478269 CCAGCTGCCACAACCCTCGGTCTGG-CAGGGG
128 CCTGCTGCCACAACCCTCGGTCTGGTC-TGAT
* * *
19478300 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * * * * *
19478365 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCAGTCCCCCCTGCGTGCTTACCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCCGTCCCCCCTGCGTGC-TGCTGATCC
* *
19478430 TGCTGTCGCAACCCTCGGT-TCGGT-TCGAT
130 TGCTGCCACAACCCTCGGTCT-GGTCT-GAT
* *
19478459 CCTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
19478486 TTATACTGGG
Statistics
Matches: 280, Mismatches: 53, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
158 17 0.06
159 256 0.91
160 7 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCCGTCCCCCCTGCGTGCTGCTGATCCT
GCTGCCACAACCCTCGGTCTGGTCTGAT
Found at i:19479206 original size:157 final size:158
Alignment explanation
Indices: 19478864--19479206 Score: 376
Period size: 158 Copynumber: 2.2 Consensus size: 158
19478854 AACTCCGTAT
* * * *
19478864 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGACATGAGCGTGCGGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTAAG
* *
19478929 CCGGCGGAGAGGCAGAATGCACAAGATGAGGATCGACCCGATCCCCCTCTGCATGCTGCCGGTCC
66 CCGGCGGAGAGGCAGAATGCACAAGATGAGGATCGACCCGATCCCCCTCTACATGCTGCCGATCC
* ***
19478994 CGCTACCACAACCCTCGGTCCAGATGTG
131 CGCTACCACAACCCTCGATCCAGATCAA
*
19479022 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCT-AA
* ** * *
19479087 -CTGGTCGGAGAGGCAGAATGTGCAAGCCA-G-GGATCGGCCCGAT-CCCC-CTACATGCTGTCG
65 GCCGG-CGGAGAGGCAGAATGCACAAG--ATGAGGATCGACCCGATCCCCCTCTACATGCTGCCG
* * * *
19479147 ATCCTGCTGCCGCAACCCTCGATTCAG-TCCAA
127 ATCCCGCTACCACAACCCTCGATCCAGAT-CAA
* * *
19479179 TCTTAGA-TTGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
19479207 TTAGACTAGG
Statistics
Matches: 155, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
156 2 0.01
157 54 0.35
158 64 0.41
159 33 0.21
160 1 0.01
161 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTAAG
CCGGCGGAGAGGCAGAATGCACAAGATGAGGATCGACCCGATCCCCCTCTACATGCTGCCGATCC
CGCTACCACAACCCTCGATCCAGATCAA
Found at i:19479350 original size:341 final size:341
Alignment explanation
Indices: 19478153--19479471 Score: 1025
Period size: 341 Copynumber: 3.7 Consensus size: 341
19478143 TAGACTGGGA
* * * * * * * * *
19478153 ATGAACTTCGTATGCATAAGTCAACCCCCGAAACGAGCGTGCGGGCACTGAGCCA-ACTGAAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG-CAGACCGGAGAG
* * * * * * * **
19478217 GCATAATGCGCAAGCCGGGGATCGCCCCGATCCCCCTCTGCGTGCTG-CTGGTCCAGCTGCCACA
65 GCAGAATGCGCAAG--TGAGATCGACCCGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTATCACA
* ** *
19478281 ACCCTCGGTCTGGCAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT
127 ACCCTCGGTCCGATA-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAT
* ** *
19478346 GGGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCGCAAGCC-GAGGATCAGCTC-AGTCC
191 GAGCGTGCGGGCACTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCAG-GGATCAGCCCGA-TCC
* * * * * * *
19478409 CCCCT-GCGTGCT-TACCGATCCTGCTGTCGCAACCCTCGGTTCGGTTCGATCCTAGACTGGGAA
254 CCCCTACCATGCTGTA-CGATCCTGCTGCCGCAACCCTC-GTTCAGTCCAATCTTAGACTGGGAA
* *
19478472 TGAACTTCGTATGCTTATACTGGGG
317 TGAACTTCGTATGCTTACACTAGGG
* * * *
19478497 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTCAGTCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGC--GC--TCAG-C--AGA--
* * * * *
19478562 CTCGCTGAACAGGCATAATGCGCAAGTAGGGGATCAACCTGGTCCCCCTCTGCGTGCTGTCGATC
57 C-CG--G-AGAGGCAGAATGCGCAAGT--GAGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT-
* ** **
19478627 CCGCTGCCGGTCCTGCTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCTGT
115 -C-CT----G--CT-AT--CACAACCCTCGGTCCGA-TAGGGCTTAGACATGGAATGAACTCCCT
* *
19478692 ATGCCTAAGCCAACCCACAAAATGAGCGTCCGGGCACTCAGTCGGTCGGAGAGGCAGACTGCGCA
168 ATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGTCGGTCGGAGAGGCAGAATGCGCA
* ** * * * *
19478757 AGCCATGGATTGGCCCGGTCCCCCCTATGTGCTACCGATCCTGCTACTGGTCCTGCTGTCGCAAC
233 AGCCAGGGATCAGCCCGAT-CCCCC------CTACC-ATGCTG-TAC-GATCCTGCTGCCGCAAC
* * * * * *
19478822 TCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTACAC-ATGGA
288 CCTCGTTCAG-TCCAATCTTAGACTGGGAATGAACTTCGTATGCTTACACTA-GGG
* * * * * *
19478877 ATGAACTCCGTATGCCTAAGCCAACCCATGACATGAGCGTGCGGGCGCTAAGCCG-GCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCAGACCGGAGAGG
* * * * * * *
19478941 CAGAATGCACAAGATGAGGATCGACCCGATCCCCCTCTGCATGCTGCCGGTCCCGCTACCACAAC
66 CAGAATGCGCAAG-TGA-GATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCACAAC
** *
19479006 CCTCGGTCCAGAT-GTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
129 CCTCGGTCC-GATAG-GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATG
* * * * *
19479070 AGCATGCGGGCGCTCA-ACTGGTCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGAT-CCC
192 AGCGTGCGGGCACTCAGTC-GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCC
*
19479133 CCTA-CATGCTGT-CGATCCTGCTGCCGCAACCCTCGATTCAGTCCAATCTTAGATTGGGAATGA
256 CCTACCATGCTGTACGATCCTGCTGCCGCAACCCTCG-TTCAGTCCAATCTTAGACTGGGAATGA
*
19479196 ACTTCGTATGCTTAGACTAGGG
320 ACTTCGTATGCTTACACTAGGG
* * *
19479218 ATGAACTCTGTATGCCTAAGCCAACCCACGAAAAGAGTGTACGGGCGCTCAGCAGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCAGACCGGAGAGG
* * *
19479283 CAGAATGCGTAAGTCGTAGATCGACCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTATCATAAC
66 CAGAATGCGCAAGT-G-AGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCACAAC
* ** * * *
19479347 CCTCGGTCCGGTCCA-ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCATCCCACAAAAT
129 CCTCGGTCCGAT--AGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAT
** * * * *
19479410 GAGCGTGCGGGTGCTGAGTC-GACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATC
191 GAGCGTGCGGGCACTCAGTCGGTC-GGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATC
19479472 ACCCTATGCA
Statistics
Matches: 776, Mismatches: 137, Indels: 126
0.75 0.13 0.12
Matches are distributed among these distances:
340 5 0.01
341 220 0.28
342 42 0.05
343 2 0.00
344 48 0.06
345 1 0.00
346 4 0.01
348 4 0.01
350 1 0.00
351 1 0.00
352 4 0.01
353 3 0.00
354 108 0.14
355 2 0.00
357 47 0.06
358 1 0.00
359 2 0.00
360 1 0.00
363 1 0.00
364 2 0.00
365 1 0.00
366 44 0.06
367 2 0.00
369 110 0.14
370 6 0.01
373 1 0.00
375 1 0.00
376 4 0.01
377 1 0.00
378 4 0.01
379 5 0.01
380 98 0.13
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (341 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCAGACCGGAGAGG
CAGAATGCGCAAGTGAGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCACAACCC
TCGGTCCGATAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCG
TGCGGGCACTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTAC
CATGCTGTACGATCCTGCTGCCGCAACCCTCGTTCAGTCCAATCTTAGACTGGGAATGAACTTCG
TATGCTTACACTAGGG
Found at i:19479390 original size:184 final size:183
Alignment explanation
Indices: 19479022--19479390 Score: 445
Period size: 183 Copynumber: 2.0 Consensus size: 183
19479012 TCCAGATGTG
* * *
19479022 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGAGCATACGGGCGCTCAA
* ** * * *
19479087 CTGGTCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTACATGCTGTCGATCCT
66 CAGACCGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCCCTACATGCTGTCGATCCT
* * * * *
19479152 GCTGCCGCAACCCTCGATTCAGTCCAATCTTAGATTGGGAATGAACTTCGTAT
131 GCTACCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* ** **
19479205 GCTTAGAC-TAGGGATGAACTCTGTATGCCTAAGCCAACCCACGAAAAGAGTGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGAGCATACGGGCGCTCA
* * * * *
19479269 GCAGACCGGAGAGGCAGAATGCGTAAGTC-GTAGATCGACCCGGTCCCCCCTACGTGCTGTCGAT
65 ACAGACCGGAGAGGCAGAATGCGCAAGCCAG-AGATCGACCCGAT-CCCCCTACATGCTGTCGAT
* * * *
19479333 CCTGCTATCATAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
128 CCTGCTACCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
19479389 GC
1 GC
19479391 CTAAGTCATC
Statistics
Matches: 155, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
182 2 0.01
183 86 0.55
184 67 0.43
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGAGCATACGGGCGCTCAA
CAGACCGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCCCTACATGCTGTCGATCCT
GCTACCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:19480295 original size:26 final size:26
Alignment explanation
Indices: 19480266--19480318 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19480256 CCGGTTTGAT
19480266 CTTACACT-AGGAATGAACTCCGTATG
1 CTTACACTGAGG-ATGAACTCCGTATG
*
19480292 CTTAGACTGAGGATGAACTCCGTATG
1 CTTACACTGAGGATGAACTCCGTATG
19480318 C
1 C
19480319 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGAGGATGAACTCCGTATG
Found at i:19481297 original size:159 final size:157
Alignment explanation
Indices: 19480903--19481348 Score: 446
Period size: 158 Copynumber: 2.8 Consensus size: 157
19480893 GGCTCAAACT
* * * *
19480903 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCACTCAGT
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * **
19480968 CGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCCCTGCAAGCTGTCGATCC
* * * * * *
19481033 TGCTATCGCTACCCTCGTCTGGTCTGAT
130 CGCTACCACAACCCTCGTCCGGTCTGAG
*** * * * *
19481061 CTTAGACTAGGAATGAACTTTGTATG-CAAAGTCAACCCACGAAATGAGCGTGGCGGGCGCTGAG
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGT-GCGGGCACTCAG
* * * *** * * *
19481125 CTGGCCGGAGAGGCATAATGCGCAAGATGGGGATCGGCCCGATCCCCCTCTGCAAGTTGTCGGTC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCAAGCTGTCGATC
* * *
19481190 CCGCTACCACAAGCCTAGGTCCGG-CTGGGG
129 CCGCTACCACAACCCT-CGTCCGGTCT-GAG
* * * * *
19481220 CTTAGACAAGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCATTCAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * * **
19481285 CAGTCGGAGAGGCAGAACGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCAAGCTGTCGATCC
19481349 TACTTTGTCG
Statistics
Matches: 225, Mismatches: 58, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
157 27 0.12
158 102 0.45
159 74 0.33
160 22 0.10
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCAAGCTGTCGATCCC
GCTACCACAACCCTCGTCCGGTCTGAG
Found at i:19483852 original size:26 final size:26
Alignment explanation
Indices: 19483816--19483868 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19483806 TTTGACTTAG
*
19483816 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
19483842 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19483868 G
1 G
19483869 ATCTAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19488788 original size:26 final size:26
Alignment explanation
Indices: 19488759--19488811 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19488749 GTTGGCTTAG
* *
19488759 GCATATGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19488785 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19488811 G
1 G
19488812 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19488945 original size:183 final size:182
Alignment explanation
Indices: 19488603--19488969 Score: 461
Period size: 183 Copynumber: 2.0 Consensus size: 182
19488593 GTTGACTTAG
* * * * ** *
19488603 GCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACTGTCGATTGCAGTAGCAGGATGGATA
1 GCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACCGACGATTGCAGCAACAGGACCGACA
* * * * *
19488668 GCACGTAGGGGGACGGGTCGATCCTCGACTTGCGCATTCTACCTCTCCGACCGACTGAGTGCTCG
66 GCACGCAGGGGGACGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGACTGAGCGCTCG
* ** *
19488733 CACGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTTATTCCATGTCTAA
131 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * *
19488785 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAATAGGACCGACA
1 GCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACCGACGATTGCAGCAACAGGACCGACA
* * *
19488850 GCACGCAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTC-AGCCTTTCC-AGCCGATTGAGCGC
66 GCACGCAGGGGGA-CGAGCCGATCCCCGACTTGCGCATTCTA-CCTCTCCGA-CCGACTGAGCGC
19488913 -CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
128 TC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
19488968 GC
1 GC
19488970 CCCAGCTGAA
Statistics
Matches: 157, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
182 68 0.43
183 89 0.57
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACCGACGATTGCAGCAACAGGACCGACA
GCACGCAGGGGGACGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGACTGAGCGCTCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:19489155 original size:26 final size:26
Alignment explanation
Indices: 19489126--19489178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19489116 GCTGACTTAG
19489126 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
**
19489152 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
19489178 G
1 G
19489179 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:19489512 original size:159 final size:157
Alignment explanation
Indices: 19489152--19489572 Score: 433
Period size: 159 Copynumber: 2.7 Consensus size: 157
19489142 CCTAGTCTAA
* * ** *
19489152 GCATACGGAGTTCATTTCTAGTCTAAGATCAGACCGGACCGAGGGTTGCCGCAGCAGGATCAACA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGACA
* * * * *
19489217 GCAC-G-CAGGGGGACC-GGATCGATCCTCGGTTTGTGCATTCTGCTTTTCCGGCCAGCTAAGCG
65 GCACGGAGAGGGGGACCGGGCT-GATCCTCGGCTTGCGCATTATGCTTTT-CGGCCAGCTAAGCG
*
19489279 CCCGCACGTCCGTTTCATGGGTTGGCTTAG
128 CCCGCACGTCCGTTTCATGGGTTGACTTAG
* ** ** * * * **
19489309 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAAACTGAGGGTTGTAGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGAC
*
19489373 AGCACGGAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTTT-GGCCAGCTCAGC
64 AGCACGGAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATG-CT-TTTCGGCCAGCTAAGC
* *
19489437 GCCCGCACG-CTCGTTTCGTGGGTTGACTTAT
127 GCCCGCACGTC-CGTTTCATGGGTTGACTTAG
* *
19489468 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGACA
* * * * *
19489533 GCACGCAG-GGAGGACCGGGCCGATCCCCGGCTTGCACATT
65 GCACGGAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATT
19489573 CTACCTCTCC
Statistics
Matches: 213, Mismatches: 41, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.02
157 45 0.21
158 35 0.16
159 118 0.55
160 8 0.04
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGACAG
CACGGAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCTTTTCGGCCAGCTAAGCGCCC
GCACGTCCGTTTCATGGGTTGACTTAG
Found at i:19489628 original size:26 final size:26
Alignment explanation
Indices: 19489592--19489642 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19489582 CGGCTTGGGG
19489592 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
19489618 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19489643 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:19490679 original size:162 final size:158
Alignment explanation
Indices: 19490242--19490819 Score: 585
Period size: 162 Copynumber: 3.6 Consensus size: 158
19490232 CCACCCGTTT
* * * * * * *
19490242 GATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGACCATCC-GCACGCTCGTTTCATGGGT
1 GATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAAC-GCCAGCACGCTCGTTTCGTGGGT
* * * *
19490306 TGACTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGGTTGCGGCAGTAG
65 TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGTAG
*
19490371 GATCGACAGCACGTA-AGGGGACTGGGCC
130 GATCGACAGCACGCAGAGGGGACTGGGCC
* * *
19490399 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCAGCACGC-CTGTTTTGTGGGT
1 GATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAACGCCAGCACGCTC-GTTTCGTGGGT
* * * * * * * * *
19490463 TGGCTTAGGCATAGGGAGTTCATT-CAATGTCTAA-ACCCCAGCTAGACCGAGGGTTGCAGCAGC
65 TGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGA-TCGAACCAGACCGAGGGTTGCGGCAGT
* * * * *
19490526 AAGACCGATAGCACGCAGAGGGGGATTGGACC
128 AGGATCGACAGCACGCAGA-GGGGACTGGGCC
* * * **
19490558 GATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTTAGGATCGATAGCACGCTCGTTTCGTGG
1 GATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGC-T--GAACGCCAGCACGCTCGTTTCGTGG
* * * * *
19490623 GTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACTGAGGGTTCCGGCAGT
63 GTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGT
* * *
19490688 AGGATCAACAGCACGTCGGAGGGGACCGGGCC
128 AGGATCGACAGCACG-CAGAGGGGACTGGGCC
* *
19490720 GATCCCCAGCTTACGCATTCTGCCTCTTCGG-CTGGCTGAACGCCCCGCACGCTCGTTTCGTGGG
1 GATCCCCAGCTTACGCATTCTGCCTCTCCGGTC-GGCTGAACG-CCAGCACGCTCGTTTCGTGGG
* *
19490784 TTGGCTTAGGCATATGGAGTTTATT-CCATGTCTAAG
64 TTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG
19490820 CATACGGAGT
Statistics
Matches: 340, Mismatches: 65, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
156 6 0.02
157 110 0.32
158 1 0.00
159 50 0.15
160 47 0.14
161 2 0.01
162 117 0.34
163 7 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAACGCCAGCACGCTCGTTTCGTGGGTT
GACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGTAGG
ATCGACAGCACGCAGAGGGGACTGGGCC
Found at i:19491549 original size:26 final size:26
Alignment explanation
Indices: 19491513--19491565 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19491503 GTTGACTTAG
*
19491513 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
19491539 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19491565 G
1 G
19491566 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19492013 original size:158 final size:158
Alignment explanation
Indices: 19491539--19492063 Score: 590
Period size: 158 Copynumber: 3.3 Consensus size: 158
19491529 CCCAGTCTAA
* * * *
19491539 GCATAC-AGAGTTCTTTCCCAGTCTAAGATCGGA-TCGGACCGAGTGTTGCGACAGCAGGATCGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGACAGCAGGATCGA
* * * * *
19491602 CAGCATGCAGGGGGGACAAGGCCGATCCCTGGCTTGTGCATTTTGCCTGTCCAGCTGGCTGAACG
64 CAGCATGCAGGGGGGACCAGGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGGCCGGCTGAGCG
* * ** *
19491667 CCCGCACGCCCGTTTCCTGGGTTGGTTTAG
129 CCTGCACGCTCGTTTTGTGGGTTGGCTTAG
* * ** * * * * * *
19491697 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGTC-AGATCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAGATC-AGACTGGACCGAGGGTTGCGACAGCAGGATCGA
* * * ** * * ** *
19491760 CAGCATGCAGAGGAGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGC
64 CAGCATGCAG-GGGGGACCAGGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGGCCGGCTGAGC
*
19491825 GCCTGCACGCTCGTTTTGTGGGTTGACTTAG
128 GCCTGCACGCTCGTTTTGTGGGTTGGCTTAG
*
19491856 GCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACA
* *
19491921 GCACGCAGGGGGGACCAGGCCGGTCCCTGGCTTGTGCATTTTGCCTCTCCGGCCGGCTGAGCGCC
66 GCATGCAGGGGGGACCAGGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGGCCGGCTGAGCGCC
*
19491986 TGCACGCTCATTTTGTGGGTTGGCTTAG
131 TGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * *
19492014 TCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCG
19492064 GCTGCAACAC
Statistics
Matches: 295, Mismatches: 65, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 171 0.58
159 118 0.40
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACA
GCATGCAGGGGGGACCAGGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGGCCGGCTGAGCGCC
TGCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:19492152 original size:13 final size:13
Alignment explanation
Indices: 19492134--19492161 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
19492124 TGCGCATTCT
19492134 ACCTCTCCGACCG
1 ACCTCTCCGACCG
19492147 ACCTCTCCGACCG
1 ACCTCTCCGACCG
19492160 AC
1 AC
19492162 AGAGCGCCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.54, G:0.14, T:0.14
Consensus pattern (13 bp):
ACCTCTCCGACCG
Found at i:19492228 original size:26 final size:26
Alignment explanation
Indices: 19492198--19492250 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19492188 GTTGACTTAG
*
19492198 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCAGTCCC-AGTCTAA
19492224 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
19492250 G
1 G
19492251 ATCCAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:19492593 original size:133 final size:133
Alignment explanation
Indices: 19492355--19492607 Score: 294
Period size: 133 Copynumber: 1.9 Consensus size: 133
19492345 CTGAGTGCCT
* *** *
19492355 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
1 GCACGCCCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCATGTCTAAGCACCAGCCGGA
* * * * ** * *
19492420 CCTAGGCTTGTGGTAGCGGGATCGACAACTTGCAGAGGGGGATCGGGCCGATCCCCAGCTCAGCG
66 CCGAGGCTTGCGATAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCGATCCCCAGCTCAGCG
19492485 CCC
131 CCC
* * * *
19492488 GCACGCTCGTTTCGTGGGTTGACTTTGGCATACAAAGTTCATTCC-TAGTCTAAG-ATCAGACCG
1 GCACGCCCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCAT-GTCTAAGCACCAG-CCG
* * *
19492551 GACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGGACCAGGCCGATCCC
64 GACCGAGGCTTGCGATAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCGATCCC
19492608 TGGCTTGTGC
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
132 4 0.04
133 94 0.96
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (133 bp):
GCACGCCCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCATGTCTAAGCACCAGCCGGA
CCGAGGCTTGCGATAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCGATCCCCAGCTCAGCG
CCC
Found at i:19492710 original size:26 final size:26
Alignment explanation
Indices: 19492674--19492726 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19492664 GTTGGCTTAG
19492674 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19492700 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19492726 G
1 G
19492727 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19493390 original size:26 final size:26
Alignment explanation
Indices: 19493354--19493406 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19493344 GTTGACCTAG
19493354 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
19493380 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19493406 G
1 G
19493407 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19493749 original size:133 final size:133
Alignment explanation
Indices: 19493506--19493763 Score: 295
Period size: 133 Copynumber: 1.9 Consensus size: 133
19493496 GCTGGCTGAA
* *** *
19493506 CGCCCGCACGCCCGTTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 CGCCCGCACGCCCGTTTCATGGGTTGACATAGGCATACAAAGTTCATTCCATGTCTAAGCACCAG
* * * * ** * *
19493571 CCGGACCTAGGCTTGTGGTAGCGGGATCGACAACTTGCAGAGGGGGATCGGGCCGATCCCCAGCT
66 CCGGACCGAGGCTTGCGATAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCGATCCCCAGCT
19493636 CAG
131 CAG
* * * * *
19493639 CGCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACAAAGTTCATTCC-TAGTCTAAG-ATCA
1 CGCCCGCACGCCCGTTTCATGGGTTGACATAGGCATACAAAGTTCATTCCAT-GTCTAAGCACCA
* * *
19493702 GACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGGACCAGGCCGATCCC
65 G-CCGGACCGAGGCTTGCGATAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCGATCCC
19493764 TGGCTTGTGC
Statistics
Matches: 102, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
132 4 0.04
133 98 0.96
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (133 bp):
CGCCCGCACGCCCGTTTCATGGGTTGACATAGGCATACAAAGTTCATTCCATGTCTAAGCACCAG
CCGGACCGAGGCTTGCGATAGCAGGATCGACAACACGCAGAGGGGGACCAGGCCGATCCCCAGCT
CAG
Found at i:19493866 original size:26 final size:26
Alignment explanation
Indices: 19493830--19493882 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19493820 GTTGGCTTAG
19493830 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19493856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19493882 G
1 G
19493883 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19496085 original size:26 final size:26
Alignment explanation
Indices: 19496056--19496108 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19496046 GTTGACTTAG
19496056 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
19496082 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
19496108 G
1 G
19496109 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:19496372 original size:159 final size:158
Alignment explanation
Indices: 19496117--19496413 Score: 380
Period size: 159 Copynumber: 1.9 Consensus size: 158
19496107 AGATCGGACA
* * *
19496117 GGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCAGGGGGGACTGGCCCGATCCCCGGCTTGC
1 GGACCGAGGGTTGCGACAGCAGGACCGATAGCACGCAGGGGGGACTGGCCCGATCCCCAGCTTGC
* * * * *
19496182 GCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTT-AGCTTAGGCATAG
66 GCATTATACCTCTCCGGTCAGCTCAGCGCCCGCACGCCCATTTCATGGGTTGA-CTTAGGCATAC
19496246 GGAGTTCATTCCATGTCTAAGCCCCAGGT
130 GGAGTTCATTCCATGTCTAAGCCCCAGGT
* * * * * *
19496275 GGACCGAGGGTTGTGGCAGCGGGACCGGTAGCATGCAGAGGGGGACTGGGCCGATCCCCAGCTTG
1 GGACCGAGGGTTGCGACAGCAGGACCGATAGCACGCAG-GGGGGACTGGCCCGATCCCCAGCTTG
* * * * * * *
19496340 TGCATTATGCCTGTTCGGTCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATAC
65 CGCATTATACCTCTCCGGTCAGCTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATAC
19496405 GGAGTTCAT
130 GGAGTTCAT
19496414 GTCCCAGCTA
Statistics
Matches: 116, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 31 0.27
159 84 0.72
160 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (158 bp):
GGACCGAGGGTTGCGACAGCAGGACCGATAGCACGCAGGGGGGACTGGCCCGATCCCCAGCTTGC
GCATTATACCTCTCCGGTCAGCTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGGT
Found at i:19498367 original size:26 final size:26
Alignment explanation
Indices: 19498338--19498390 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19498328 GTTGACTTAG
19498338 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
19498364 GCATATGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19498390 G
1 G
19498391 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19498898 original size:158 final size:158
Alignment explanation
Indices: 19498415--19498899 Score: 432
Period size: 160 Copynumber: 3.1 Consensus size: 158
19498405 AGGGTTGCGA
* * * * *
19498415 CAGCAGGATCGACAGCACCCA-AGGGGGACCGGGCCAATCCCC-GACTTACGCATTCTGCCTCTC
1 CAGCAGGACCGACAGCACGCAGAGGGGGACTGAGCCAATCCCCAG-CTTACGCATTCTACCTCTC
** * *
19498478 CAGCCG-GCTGAGCACCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATA-GGCAATTCATTCCA
65 C-GGTGAGCTGAGCACCCGCACGCC-GTTTCATGGGTTGGCTTAGGCATACGG-AGTTCATCCCA
* * ** *
19498541 TGTCTAAGCCCCA-ACTGAGCTGAGGGTTGTGG
127 TGTCTAAGCCCCAGTCGGA-CCAAAGGTTGTGG
* * * * *
19498573 TAGCGGGACCGACAGCACGCAGAGGGGGACTGAGCCAATCCCCGGCTTGCACATT-TATGCCTCT
1 CAGCAGGACCGACAGCACGCAGAGGGGGACTGAGCCAATCCCCAGCTTACGCATTCTA--CCTCT
* * * * *
19498637 CTGGTTAGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACA
64 CCGGTGAGCTGAGCACCCGCACGC-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TCCCA
** * * * * *
19498702 -GTCTAAG-ATCGGATCGGACCAACGATTGCGA
127 TGTCTAAGCCCCAG-TCGGACCAAAGGTTGTGG
* ** * * * *
19498733 CTGCAGGATTGATAGCACGCAG-GGGGG-CATCGGGCCGATCCCTAGCTTACGCATTCTACCTCT
1 CAGCAGGACCGACAGCACGCAGAGGGGGAC-T-GAGCCAATCCCCAGCTTACGCATTCTACCTCT
*
19498796 CCGGTGAGCTGAGCACCCGCACGCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATG
64 CCGGTGAGCTGAGCACCCGCACGCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATG
19498861 TCTAAGCCCCAGTCGGACCAAAGGTTGTGG
129 TCTAAGCCCCAGTCGGACCAAAGGTTGTGG
*
19498891 CAACAGGAC
1 CAGCAGGAC
19498900 TGGTAGCGGG
Statistics
Matches: 255, Mismatches: 57, Indels: 30
0.75 0.17 0.09
Matches are distributed among these distances:
157 4 0.02
158 78 0.31
159 63 0.25
160 99 0.39
161 11 0.04
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (158 bp):
CAGCAGGACCGACAGCACGCAGAGGGGGACTGAGCCAATCCCCAGCTTACGCATTCTACCTCTCC
GGTGAGCTGAGCACCCGCACGCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTC
TAAGCCCCAGTCGGACCAAAGGTTGTGG
Found at i:19499060 original size:26 final size:26
Alignment explanation
Indices: 19499024--19499075 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19499014 TTGACTTGGC
*
19499024 CATATGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
19499050 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
19499076 ATTAGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:19499958 original size:26 final size:26
Alignment explanation
Indices: 19499928--19499980 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19499918 GTTGACTTAG
*
19499928 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
19499954 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
19499980 G
1 G
19499981 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:19500427 original size:158 final size:158
Alignment explanation
Indices: 19499954--19500446 Score: 472
Period size: 159 Copynumber: 3.1 Consensus size: 158
19499944 CCCAGTCTAA
* * * * * *
19499954 GCATACGGAGTTCATTCCCAATCTAAGATTGGATTGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATAAGGAGTTCATTCCAAATCTAAGATTAGACTAGATCGAGGGTTGCGACAGTAGGATCGACA
* * * *
19500019 GCATGTA-GGGGGACCAGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
19500083 CACACGCCCGTTTC-TTGGGTTGGCTTAG
131 CTCACGCTCGTTTCGTT-GGTTGGCTTAG
* ** *** * * * * ** * * * *
19500111 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCACATCGAAGGTTGTGGTAATGGGACCGGC
1 GCATAAGGAGTTCATTCCAAATCTAAG-ATTAGACTAGATCGAGGGTTGCGACAGTAGGATCGAC
* * * * ** *
19500175 AGCACGCAGAGGGGGATCGGGGCAATCCCCGGCTTGCGCATTATGCCTTTCCGAATGGCTCAGCG
65 AGCACGCAG-GGGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * *
19500240 -CCTGCACGCTCGTATCGTGGGTTGACTTAG
129 CCCT-CACGCTCGTTTCGTTGGTTGGCTTAG
* * * * *
19500270 GCATATGGAGTTCCTTCCAAATCTAAGATTAGACTAGACCGAGGGTTGCGACAGTAGGATTGATA
1 GCATAAGGAGTTCATTCCAAATCTAAGATTAGACTAGATCGAGGGTTGCGACAGTAGGATCGACA
* * * *
19500335 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCC
66 GCACGCAGGGGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
19500400 CTTATGCTCATTTCGTTGGTTGGCTTAG
131 CTCACGCTCGTTTCGTTGGTTGGCTTAG
19500428 GCATAAGGAGTTCATTCCA
1 GCATAAGGAGTTCATTCCA
19500447 TGTCTAAGCA
Statistics
Matches: 254, Mismatches: 75, Indels: 13
0.74 0.22 0.04
Matches are distributed among these distances:
157 48 0.19
158 85 0.33
159 120 0.47
160 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATAAGGAGTTCATTCCAAATCTAAGATTAGACTAGATCGAGGGTTGCGACAGTAGGATCGACA
GCACGCAGGGGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CTCACGCTCGTTTCGTTGGTTGGCTTAG
Found at i:19500838 original size:26 final size:26
Alignment explanation
Indices: 19500808--19500860 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19500798 GTTGACTTAG
19500808 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19500834 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19500860 G
1 G
19500861 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19501316 original size:158 final size:155
Alignment explanation
Indices: 19500833--19501324 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 155
19500823 CCCCAGTCTA
* * * *
19500833 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCAGCAGTAGGATCGGC
1 AGCATACGGAGTTCATT-CCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAATAGGATCGAC
* * *
19500898 AGCAT-GCAGGGGGGATCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
65 AGC-TCGTAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
19500962 CCCGCACGC-CTGTTTCGTGGGTTGGCTT
129 CCCGCACGCTC-ATTTCGTGGGTT-GCTT
* * ** * * * * *
19500990 --CATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGATTGAGGGTTGTGGTAACAGGATCGA
1 AGCATACGGAGTTCATTCCA-GTCTAAGATCGGA-TCAGATCGAGGGTTGCGGCAATAGGATCGA
* * * * * * * * * * *
19501052 CGGCACGTAGAGGGGGATCGGGCTGA-ACCTCGGCTTACGTATTATGCCTCTTCGGCCGGCTCAG
64 CAGCTCGTAG-GGGGGATCGGGCCGATCCCT-AGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * *
19501116 CACCCGTACGCTCTTTTCGTGGGTTGACTT
127 CGCCCGCACGCTCATTTCGTGGGTTG-CTT
* *
19501146 ATGCATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAATAGGATCGA
1 A-GCATACGGAGTTCATTC-CAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAATAGGATCGA
* * * * * *
19501211 CAGCTCGTAGGGGGGACCGGGCCGATCCCTAGCTTGCACATTCTACCTCTCCGACTGACTGAACG
64 CAGCTCGTAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
19501276 CCCGCACGCTCATTTCATGGGTTAGCTT
129 CCCGCACGCTCATTTCGTGGGTT-GCTT
19501304 AGGCATACGGAGTTCATTCCA
1 A-GCATACGGAGTTCATTCCA
19501325 TGTTTAAGCA
Statistics
Matches: 258, Mismatches: 63, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
154 5 0.02
155 51 0.20
156 62 0.24
157 3 0.01
158 76 0.29
159 57 0.22
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
AGCATACGGAGTTCATTCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAATAGGATCGACA
GCTCGTAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGCTT
Found at i:19501358 original size:26 final size:26
Alignment explanation
Indices: 19501306--19501358 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19501296 GTTAGCTTAG
*
19501306 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
19501332 GCATACGGTGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
19501358 G
1 G
19501359 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19507994 original size:26 final size:26
Alignment explanation
Indices: 19507958--19508008 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19507948 GTTGACTTAG
*
19507958 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
19507984 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
19508009 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Done.