Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 179 of 402
Found at i:19508292 original size:159 final size:155
Alignment explanation
Indices: 19507984--19508484 Score: 412
Period size: 159 Copynumber: 3.2 Consensus size: 155
19507974 CCCAGTCTAA
* * * * * * *
19507984 GCATACGGAGTTCATTCCCAATCTATGATCAGACCGGACCGAGGGTTGCGACAACAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGGACCAAGGGTTACGGCAGCAGGATCGACA
* * * * * * * * * * * * * **
19508049 ACACACAGGGGGGACCGGGCCAATCCTCGGCTTGCACATTCTACCTCTTCGGCCGGTTGAGCGCC
65 GCACGCAAGGGGGACAGAGCCGATCCCCGGCTTGCGCATTATGCCTC-TCCGCC-GCTCAATGCC
* *
19508114 CGTACGCCCATTTCGTGGGTTGGCTTAG
128 CGTACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * *
19508142 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTACGGCAGCAGGATCGAC
* * *
19508206 AGCACGCAGAGGGGGATCAG-GCTGATCCCCGGCTTGCGCATTATTCCTCTTCGACCTGCTCAAT
64 AGCACGCA-AGGGGGA-CAGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCG-CC-GCTCAAT
* * *
19508270 GCCCGTACGCTCGTTTCATGGGTTGACTTAT
125 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
** ** * * *
19508301 GCATACGGAGTTCATTTTGAGTCTAAGATTAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCA-TTCCAGTCTAAGACCAGACCGGACCAAGGGTTACGGCAGCAGGATCGACA
* * * * * *
19508366 GCACGTAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGCCGTTGAGTGCCCG
65 GCACGCAAGGGGGACAGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGCCGCTCAATGCCCG
* * *
19508431 CACGCTCGTTTCGTAGGTTGGGTTAG
130 TACGCTCGTTTCGTGGGTTGGCTTAG
*
19508457 GCATACGGAGTTCATTCCCAATCTAAGA
1 GCATACGGAGTTCATT-CCAGTCTAAGA
19508485 TTTTGAGCAA
Statistics
Matches: 270, Mismatches: 64, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
155 2 0.01
156 51 0.19
157 7 0.03
158 91 0.34
159 114 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGACCGGACCAAGGGTTACGGCAGCAGGATCGACAG
CACGCAAGGGGGACAGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGCCGCTCAATGCCCGT
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19508573 original size:11 final size:11
Alignment explanation
Indices: 19508553--19508585 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
19508543 CTCGGGGCAC
19508553 CATCGCCGGAG
1 CATCGCCGGAG
*
19508564 CATCGTCGGAG
1 CATCGCCGGAG
19508575 CATCGCCGGAG
1 CATCGCCGGAG
19508586 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.36, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:19509199 original size:26 final size:26
Alignment explanation
Indices: 19509163--19509215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19509153 GTTGACTTAG
*
19509163 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
19509189 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19509215 G
1 G
19509216 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19509714 original size:26 final size:26
Alignment explanation
Indices: 19509664--19509716 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19509654 GTTGGCTTAG
*
19509664 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
19509690 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCATTCCAC-ATCTAA
19509716 G
1 G
19509717 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:19509864 original size:184 final size:185
Alignment explanation
Indices: 19509512--19509875 Score: 434
Period size: 184 Copynumber: 2.0 Consensus size: 185
19509502 TAGGCATGCA
* * *
19509512 GAGTTCATTCCCTATCTAAGAGTGGACCAGACTGAGGATTACGGCAGCAAGATCGAGAGCACGTA
1 GAGTTCATTCCCAATCTAAGAGTGAACCAGACTGAGGATTACGGCAGCAAGATCGAGAACACGTA
* * * * * *
19509577 AGGGGGGACCGGGCTGATCCCCGACTTTCGCATTCTGCCTCTTCAGCCGGCTGAACGCCCGTACG
66 AGGGGGGACCGGGCTAATCCCCGACTTGCCCATTCTCCCTCTTCAGCCGACTGAACGCCCCTACG
* *
19509642 CTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACG
131 CCCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACG
* * * *
19509697 GAGTTCATTCCCAATCTAAGA-TCGAACCGGACTGAGGGTTGCGGCAGCAGGATCG-GCAACACG
1 GAGTTCATTCCCAATCTAAGAGT-GAACCAGACTGAGGATTACGGCAGCAAGATCGAG-AACACG
* * *
19509760 -CAGGGGGGACCGGGCTAATCCCTGACTTGCCCATTCTCCCTC-TCCGTCCGACTG-A-GCCCCT
64 TAAGGGGGGACCGGGCTAATCCCCGACTTGCCCATTCTCCCTCTTCAG-CCGACTGAACGCCCCT
* * * * *
19509821 CCACGCCCGTTTCGTCGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 --ACGCCCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
19509876 CCCAATCGGA
Statistics
Matches: 151, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
182 5 0.03
183 4 0.03
184 90 0.60
185 52 0.34
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (185 bp):
GAGTTCATTCCCAATCTAAGAGTGAACCAGACTGAGGATTACGGCAGCAAGATCGAGAACACGTA
AGGGGGGACCGGGCTAATCCCCGACTTGCCCATTCTCCCTCTTCAGCCGACTGAACGCCCCTACG
CCCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACG
Found at i:19510099 original size:501 final size:500
Alignment explanation
Indices: 19509091--19510400 Score: 1421
Period size: 501 Copynumber: 2.6 Consensus size: 500
19509081 CCACCCGTTC
* ** * * * * *
19509091 GATCCCCGGCTTGTGCA-TCCTGCCTCTCTGGTCGGCTGAGA-GCCCGCACACTCGTTTCGTGGG
1 GATCCCCAGCTTGTGCATTCC-GCCTCTCCAGCCGGCTGA-ACGCCCACACGCTCATTTCGAGGG
* *
19509154 TTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
64 TTGACTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
19509218 C-AGATCAGACCGAGGGTTGCGGTAACAGGATCGACAGCACACAGGGGGGATTC-GACTGATCCC
128 CGA-ACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGA-CCGGGCTAATCCC
* * * * * * * * *
19509281 -CAGCTTGCGCATTCTACCTCTTCGGCAGTTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTA
191 TGA-CTTGCGCATTCTACCTCTCCGTCCGCTGAGCGCCCTCACGCCCGTTTCGTGGGTTGGCTTA
* * * *
19509345 GGCATAGGGAATTCATTCCATGTCTAAGCTCC-TGCTGGACCGAGGGTTGTGGTAGCGGGACTAG
255 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAT-C-GGACCGAGGGTTGTGGTAACGGGACGAG
* * * * * *
19509409 CAGCACACAGAGGGGGATCAGGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGCTTGCTCAGC
318 CAGCACACAGAGGGGGACCAGGCCGATCCTCGACTTACACATTATGCCTCTCCGACTCGCTCAAC
* * * * *
19509474 ACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATGCAGAGTTCATTCCCTATCTAAGAGTGGAC
383 ACCCGCACGCTCGTTCCATAGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAAGAGTAGAC
* *
19509539 CAGACTGAGGATTACGGCAGCAAGATCGAGAGCACGTAAGGGGGGACCGGGCT
448 CAGACCGAGGATTACGGCAGCAAGATCGACAGCACGTAAGGGGGGACCGGGCT
* * ** *
19509592 GATCCCC-GACTT-TCGCATTCTGCCTCTTCAGCCGGCTGAACGCCCGTACGCTCATTTC-ATTG
1 GATCCCCAG-CTTGT-GCATTCCGCCTCTCCAGCCGGCTGAACGCCCACACGCTCATTTCGA-GG
* *
19509654 GTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
63 GTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
19509719 CGAACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAACACGCAGGGGGGACCGGGCTAATCCCTG
128 CGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGACCGGGCTAATCCCTG
* * * *
19509784 ACTTGCCCATTCTCCCTCTCCGTCCGACTGAGC-CCCTCCACGCCCGTTTCGTCGGTTGTCTTAG
193 ACTTGCGCATTCTACCTCTCCGTCCG-CTGAGCGCCCT-CACGCCCGTTTCGTGGGTTGGCTTAG
* *
19509848 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGTTGTGGTAATGGGACCGA-C
256 GCATAGGGAGTTCATTCCATGTCTAAGCCCC-ATCGGACCGAGGGTTGTGGTAACGGGA-CGAGC
* * * * ** *
19509912 AGCACGCGGAGGGGGACCAGGCTGATCCTCGATTTACGTATTATGCCTCTCCGAC-CGACTGAAC
319 AGCACACAGAGGGGGACCAGGCCGATCCTCGACTTACACATTATGCCTCTCCGACTCG-CTCAAC
* *
19509976 ACCCGCACGCTCGTTCCTTAGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGA-TCAG
383 ACCCGCACGCTCGTTCCATAGGTTGACTTAGGCATACAGAGTTCATTCCCTA-TCTAAGAGT-AG
* * * *
19510039 ATCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGT-AGGGGGGACCGGGCT
446 ACCAGACCGAGGATTACGGCAGCAAGATCGACAGCACGTAAGGGGGGACCGGGCT
* ** * *
19510093 GATCCCCAGCTTGTGCATTCCGCCTCTCCGGTTGGCTGAGCGCCCACACGCTCGTTTCGAGGGTT
1 GATCCCCAGCTTGTGCATTCCGCCTCTCCAGCCGGCTGAACGCCCACACGCTCATTTCGAGGGTT
* * * * * *
19510158 GTCTTAGGCATACGGAGTTTATTCCATGTCTAAGGATACGGGGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* * * * * *
19510223 ACCGGACCGAGGGTTGCGGTAGCAAGATCGACAGCACACAGGGAAGGACCGAGCCATTCCTTGAC
131 ACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGG-GGGACCGGGCTAATCCCTGAC
* * * * *
19510288 TTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGT-ACGCTCGTTTCGTGGGTAGGCTTAGGC
195 TTGCGCATTCTACCTC-TCCGTCCGCTGAGCGCCC-TCACGCCCGTTTCGTGGGTTGGCTTAGGC
* * *
19510352 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGG
258 ATAGGGAGTTCATTCCATGTCTAAGCCCCA-TCGGACCGAGGGTTGTGG
19510401 CAGCAGGACC
Statistics
Matches: 674, Mismatches: 110, Indels: 49
0.81 0.13 0.06
Matches are distributed among these distances:
500 4 0.01
501 332 0.49
502 324 0.48
503 12 0.02
504 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (500 bp):
GATCCCCAGCTTGTGCATTCCGCCTCTCCAGCCGGCTGAACGCCCACACGCTCATTTCGAGGGTT
GACTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
ACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGACCGGGCTAATCCCTGACT
TGCGCATTCTACCTCTCCGTCCGCTGAGCGCCCTCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCATCGGACCGAGGGTTGTGGTAACGGGACGAGCAGCACAC
AGAGGGGGACCAGGCCGATCCTCGACTTACACATTATGCCTCTCCGACTCGCTCAACACCCGCAC
GCTCGTTCCATAGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAAGAGTAGACCAGACCGA
GGATTACGGCAGCAAGATCGACAGCACGTAAGGGGGGACCGGGCT
Found at i:19510164 original size:158 final size:155
Alignment explanation
Indices: 19509690--19510191 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 155
19509680 CCACGTCTAA
* * * * *
19509690 GCATACGGAGTTCATTCCCA-ATCTAAGATC-GAACCGGACTGAGGGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-ATCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * **
19509753 CAACACGCAGGGGGGACCGGGCTAATCCCTGACTTGCCCATTCTC-CCTCTCC-GTCCGACTGAG
64 CAGCACGCAGGGGGGACCGGGCTGATCCCCG-CTTGTGCATTC-CGCCTCTCCGGT-CGACTGAG
* * *
19509816 CCCCTCCACGCCCGTTTCGTCGGTTGTCTTAG
126 CCCC-ACACGCTCGTTTCG-AGGTTGTCTTAG
* ** * * *** *
19509848 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGACCAAGGGTTGTGGTAATGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * ** ** *
19509912 AGCACGCGGAGGGGGACCAGGCTGATCCTCGATT-TACGTATTATGCCTCTCCGACCGACTGAAC
65 AGCACGCAG-GGGGGACCGGGCTGATCCCCGCTTGT--GCATTCCGCCTCTCCGGTCGACTGAGC
* * * *
19509976 ACCCGCACGCTCGTTCCTTAGGTTGACTTAG
127 -CCCACACGCTCGTTTC-GAGGTTGTCTTAG
* *
19510007 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
19510071 AGCACGTAGGGGGGACCGGGCTGATCCCCAGCTTGTGCATTCCGCCTCTCCGGTTGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCTGATCCCC-GCTTGTGCATTCCGCCTCTCCGGTCGACTGAGC-C
19510136 CCACACGCTCGTTTCGAGGGTTGTCTTAG
128 CCACACGCTCGTTTCGA-GGTTGTCTTAG
*
19510165 GCATACGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
19510192 GATACGGGGT
Statistics
Matches: 263, Mismatches: 65, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
157 7 0.03
158 137 0.52
159 112 0.43
160 7 0.03
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCTGATCCCCGCTTGTGCATTCCGCCTCTCCGGTCGACTGAGCCCCA
CACGCTCGTTTCGAGGTTGTCTTAG
Found at i:19510197 original size:26 final size:28
Alignment explanation
Indices: 19510157--19510217 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 28
19510147 TTTCGAGGGT
* *
19510157 TGTCTTAGGCATACGGAGTTTATT-CCA
1 TGTCTAAGGCATACGGAGTTCATTCCCA
*
19510184 TGTCTAAGG-ATACGGGGTTCATTCCCA
1 TGTCTAAGGCATACGGAGTTCATTCCCA
19510211 -GTCTAAG
1 TGTCTAAG
19510218 ATCGGACCGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.33
Consensus pattern (28 bp):
TGTCTAAGGCATACGGAGTTCATTCCCA
Found at i:19510373 original size:185 final size:184
Alignment explanation
Indices: 19510009--19510376 Score: 495
Period size: 185 Copynumber: 2.0 Consensus size: 184
19509999 TGACTTAGGC
* *
19510009 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGACAGC
** * * * * *
19510074 ACGTAGGGGGGACCGGGCTGATCCCCAGCTTGTGCATTCCGCCTCTCCGGTTGGCTGAGCGCCCA
66 ACACAGGGAGGACCGAGCTCATCCCCAGCTTGCGCATTCCGCCTCTCCGGTCGGCTGAGCGCCCA
* * *
19510139 CACGCTCGTTTCGAGGGTTGTCTTAGGCATACGGAGTTTATTCCATGTCTAAGG
131 CACGCTCGTTTCGAGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGG
* * * *
19510193 ATACGGGGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGACAGC
* ** * *
19510258 ACACAGGGAAGGACCGAGC-CATTCCTTGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
66 ACACAGGG-AGGACCGAGCTCATCCCCAG-CTTGCGCATTCCGCCTCTCCGGTCGGCTGAGCGCC
** *
19510322 CGTACGCTCGTTTCGTGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
129 CACACGCTCGTTTCGAGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
19510377 CCCCAGCCAG
Statistics
Matches: 158, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
184 70 0.44
185 88 0.56
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (184 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGACAGC
ACACAGGGAGGACCGAGCTCATCCCCAGCTTGCGCATTCCGCCTCTCCGGTCGGCTGAGCGCCCA
CACGCTCGTTTCGAGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGG
Found at i:19510412 original size:502 final size:500
Alignment explanation
Indices: 19509091--19510417 Score: 1512
Period size: 502 Copynumber: 2.6 Consensus size: 500
19509081 CCACCCGTTC
* * * *
19509091 GATCCCCGGCTTGTGCA-TCCTGCCTCTCTGGTCGGCTGAGAGCCCGCACACTCGTTTCGTGGGT
1 GATCCCC-GCTTGTGCATTCC-GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGAGGGT
* * *
19509155 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
64 TGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
19509220 GATCAGACCGAGGGTTGCGGTAACAGGATCGACAGCACACAGGGGGGATTCGA-CTGATCCCCAG
128 GACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGA-CCGAGC-CATTCCCTG
* * * * * *
19509284 -CTTGCGCATTCTACCTCTTCGG-CAGTTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGG
191 ACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGG
* * * * *
19509347 CATAGGGAATTCATTCCATGTCTAAGCTCCTGCTGGACCGAGGGTTGTGGTAGCGGGA-CTAGCA
256 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGA-CA
* * * * * *
19509411 GCACACAGAGGGGGATCAGGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGCTTGCTCAGCAC
320 GCACACAGAGGGGGACCAGGCCGATCCTCGACTTACACATTATGCCTCTCCGACTCGCTCAACAC
* * * * *
19509476 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATGCAGAGTTCATTCCCTATCTAAGAGTGGACCA
385 CCGCACGCTCGTTCCATAGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAAGAGTAGACCA
* *
19509541 GACTGAGGATTACGGCAGCAAGATCGAGAGCACGTAAGGGGGGACCGGGCT
450 GACCGAGGATTACGGCAGCAAGATCGACAGCACGTAAGGGGGGACCGGGCT
* * * * * * * *
19509592 GATCCCCGACTT-TCGCATTCTGCCTCTTCAGCCGGCTGAACGCCCGTACGCTCATTTC-ATTGG
1 GATCCCCG-CTTGT-GCATTCCGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGA-GGG
* *
19509655 TTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
63 TTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * *
19509720 GAACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAACACGCAGGGGGGACCGGGCTAATCCCTGA
127 GGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGACCGAGCCATTCCCTGA
* * * * * *
19509785 CTTGCCCATTCTCCCTC-TCCGTCCGACTGAGC-CCC-TCCACGCCCGTTTCGTCGGTTGTCTTA
192 CTTGCGCATTCTACCTCTTCGGT-CGGCTGAGCGCCCGT--ACGCCCGTTTCGTGGGTTGGCTTA
** * **
19509847 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGTTGTGGTAATGGGACCGAC
254 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGAC
* * * * ** *
19509912 AGCACGCGGAGGGGGACCAGGCTGATCCTCGATTTACGTATTATGCCTCTCCGAC-CGACTGAAC
319 AGCACACAGAGGGGGACCAGGCCGATCCTCGACTTACACATTATGCCTCTCCGACTCG-CTCAAC
* *
19509976 ACCCGCACGCTCGTTCCTTAGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGA-TCAG
383 ACCCGCACGCTCGTTCCATAGGTTGACTTAGGCATACAGAGTTCATTCCCTA-TCTAAGAGT-AG
* * * *
19510039 ATCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGT-AGGGGGGACCGGGCT
446 ACCAGACCGAGGATTACGGCAGCAAGATCGACAGCACGTAAGGGGGGACCGGGCT
* *
19510093 GATCCCCAGCTTGTGCATTCCGCCTCTCCGGTTGGCTGAGCGCCCACACGCTCGTTTCGAGGGTT
1 GATCCCC-GCTTGTGCATTCCGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGAGGGTT
* * * *
19510158 GTCTTAGGCATACGGAGTTTATTCCATGTCTAAGGATACGGGGTTCATTCCCAGTCTAAGATCGG
65 GACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
19510223 ACCGGACCGAGGGTTGCGGTAGCAAGATCGACAGCACACAGGGAAGGACCGAGCCATTCCTTGAC
129 ACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGG-GGGACCGAGCCATTCCCTGAC
* * *
19510288 TTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTAGGCTTAGGCA
193 TTGCGCATTCTACCTCTTCGGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCA
* * * *
19510353 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCA
258 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCA
19510418 TAAGGAGTTC
Statistics
Matches: 679, Mismatches: 125, Indels: 43
0.80 0.15 0.05
Matches are distributed among these distances:
500 15 0.02
501 320 0.47
502 334 0.49
503 9 0.01
504 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (500 bp):
GATCCCCGCTTGTGCATTCCGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGAGGGTTG
ACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGACCGAGCCATTCCCTGACTTG
CGCATTCTACCTCTTCGGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACAC
AGAGGGGGACCAGGCCGATCCTCGACTTACACATTATGCCTCTCCGACTCGCTCAACACCCGCAC
GCTCGTTCCATAGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAAGAGTAGACCAGACCGA
GGATTACGGCAGCAAGATCGACAGCACGTAAGGGGGGACCGGGCT
Found at i:19510450 original size:26 final size:26
Alignment explanation
Indices: 19510414--19510467 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
19510404 CAGGACCGAC
19510414 AGCATAAGGAGTTCATCCCCAGTCTA
1 AGCATAAGGAGTTCATCCCCAGTCTA
* *
19510440 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATAAGGAGTTCATCCCCAGTCTA
19510466 AG
1 AG
19510468 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (26 bp):
AGCATAAGGAGTTCATCCCCAGTCTA
Found at i:19510996 original size:159 final size:157
Alignment explanation
Indices: 19510504--19511261 Score: 501
Period size: 159 Copynumber: 4.8 Consensus size: 157
19510494 GCAGGATTGG
* * * *
19510504 CAGCACGCAGGGGGGACCAAGCCGATCCCCAGCCTACGCATTCTGCCTCTCCGACTGGCTGAGCA
1 CAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCA
* * * * *
19510569 CCCGCACACCCGTTTCATGAGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
66 CCCG-ACACCCATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* *
19510634 GGATCGAGGGTTGTGGCAGCGAGA-CTGG
130 GGATCAAGGGTTGTGGCAGCGAGATC-GA
* * * * ** * * * * *
19510662 CAGCATACAGCGAGGGATCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTCTGATTGGCTGAGT
1 CAGCACACAG-GGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGC
* * ** * ***
19510727 GCCC-ACACGCTCATTTTCATGGGTTGACTTACATATATGGAGTTCATTCCCA-GTCTAAG-ATT
65 ACCCGACAC-C-CA-TTTCATGGGTTGGCTTAGGTATAGGGAGTTCATT-CCATGTCTAAGCCCC
* ** ** *
19510789 AGACCGGACCAAACGTTGCAGCAGCAAGATCGA
126 AG-CCGGATCAAGGGTTGTGGCAGCGAGATCGA
* * * *
19510822 CAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCA
1 CAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCA
* * *
19510887 CCCGGACACCCATTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATCTCTAAGCCCCAGCC
66 CCC-GACACCCATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* *
19510952 AGATCAAGGGTTGTGGCAGCGGGATCGA
130 GGATCAAGGGTTGTGGCAGCGAGATCGA
* * * * ** * * * * *
19510980 CAGCACACAGAGGGGGACC-GAACTGATTCCTGGCTTGTGCATTATGCCTTTTCGACCGGCTCAG
1 CAGCACACAG-GGGGGACCAG-GCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAG
* * * * * * * * * **
19511044 CGCCCG-CACGCTCGTTTCGTGTGTTGACTTACGCATACGAAGTTCATTCCCA-GTCTAAG-ATC
64 CACCCGACAC-C-CATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATT-CCATGTCTAAGCCCC
* * * *
19511106 AGATCAGACCGAGGGTTGTGGCAGC-AGGATCGA
126 AG-CCGGATCAAGGGTTGTGGCAGCGA-GATCGA
* *** * * * * ** *
19511139 CAGCACATATAAGGGACCGGGCTGATCCTCAGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCG
1 CAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCA
* * * * *
19511204 CCCG-CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
66 CCCGACAC-C-CATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGC
19511262 ATACAGAGTT
Statistics
Matches: 461, Mismatches: 118, Indels: 41
0.74 0.19 0.07
Matches are distributed among these distances:
157 13 0.03
158 171 0.37
159 204 0.44
160 65 0.14
161 8 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (157 bp):
CAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCA
CCCGACACCCATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GATCAAGGGTTGTGGCAGCGAGATCGA
Found at i:19511024 original size:318 final size:316
Alignment explanation
Indices: 19510442--19511261 Score: 926
Period size: 318 Copynumber: 2.6 Consensus size: 316
19510432 CCAGTCTAAG
* * * * *
19510442 CATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCTAGGGCTGTGA-CAGCAGGATTGGCA
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG-T-TGAGCAGCAGGATCGACA
* *
19510506 GCACGCAGGGGGGACCAAGCCGATCCCCAGCCTACGCATTCTGCCTCTCCGACTGGCTGAGCACC
64 GCACGCAGGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCACC
* * * **
19510571 CGCACACCCGTTTCATGAGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
129 CGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * * **
19510636 ATCGAGGGTTGTGGCAGCGAGACTGGCAGCATACAGCGAGGGATCGGGCTAATCCCCGGCTTGCG
194 ATCAAGGGTTGTGGCAGCGAGACTGACAGCACACAGAGAGGGACCGAACTAATCCCCGGCTTGCG
** * * *
19510701 CATTATGCC-TCTCTGATTGGCTGAGTGCCCACACGCTCATTTTCATGGGTTGACTTACA
259 CATTATGCCTTCTC-GACCGGCTCAGCGCCCACACGCTC-GTTTCATGGGTTGACTTACA
* * * ** *
19510760 TATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAACGTTGCAGCAGCAAGATCGACAG
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTG-AGCAGCAGGATCGACAG
* * * *
19510825 CACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCACCC
65 CACGCAGGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCC
* * ** *
19510890 GGACACCCATTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGA
130 GCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
* * * * * *
19510955 TCAAGGGTTGTGGCAGCGGGA-TCGACAGCACACAGAGGGGGACCGAACTGATTCCTGGCTTGTG
195 TCAAGGGTTGTGGCAGCGAGACT-GACAGCACACAGAGAGGGACCGAACTAATCCCCGGCTTGCG
* * * * *
19511019 CATTATGCCTTTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTACG
259 CATTATGCCTTCTCGACCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTACA
* * * * *
19511077 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTG-AGCAGCAGGATCGACAG
** *** * * * ** *
19511142 CACATATAAGGGACCGGGCTGATCCTCAGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCGCCC
65 CACGCAGGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCC
* * * *
19511207 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
130 GCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
19511262 ATACAGAGTT
Statistics
Matches: 412, Mismatches: 86, Indels: 9
0.81 0.17 0.02
Matches are distributed among these distances:
316 2 0.00
317 168 0.41
318 239 0.58
319 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (316 bp):
CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGAGCAGCAGGATCGACAGC
ACGCAGGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCCG
CACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAT
CAAGGGTTGTGGCAGCGAGACTGACAGCACACAGAGAGGGACCGAACTAATCCCCGGCTTGCGCA
TTATGCCTTCTCGACCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTACA
Found at i:19511729 original size:158 final size:158
Alignment explanation
Indices: 19511321--19511775 Score: 533
Period size: 159 Copynumber: 2.9 Consensus size: 158
19511311 TAGTAGGACA
* * * * * *
19511321 GGCAGTAGGATCGACAGCACACAGGAGGGGATCGAACCGATCCCCGGCTTACGCATTCTGCCTGT
1 GGCAGCAGGATCGACAGCACACAGG-GGGGACCGAACTGATCCTCGGCTTGCGCATTCTGCCTCT
* * * * * *
19511386 CTC-ACCGACTGAGCGCCTGTACGCTCATTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCA
65 C-CGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * *
19511450 TCTCTAAGCCCCAGCCAGATCGAGGGTTGT
129 TGTCTAAGCACCAGCCAGACCGAGGGTTGC
* * *
19511480 GGCAGCGGGATCGACAGCACACAGAGGGGGACCGAACTGATTCCT-GGCTTGCGCATTATGCCTT
1 GGCAGCAGGATCGACAGCACACAG-GGGGGACCGAACTGA-TCCTCGGCTTGCGCATTCTGCCTC
* * * * *
19511544 TTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTACGCATACGGAGTTCATTCCC
64 TCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC
* * *
19511609 A-GTCTAAG-ATCAGATCGGACCGAGGGTTGC
128 ATGTCTAAGCACCAG-CCAGACCGAGGGTTGC
* ** * *
19511639 GGCAGCAGGATCGACAGCACATAGGGGGGACCGGGCTGATCCTCAGCTTGTGCATTCTGCCTCTC
1 GGCAGCAGGATCGACAGCACACAGGGGGGACCGAACTGATCCTCGGCTTGCGCATTCTGCCTCTC
19511704 CGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATG
66 CGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
19511768 TCTAAGCA
131 TCTAAGCA
19511776 TACGGAGTTC
Statistics
Matches: 249, Mismatches: 39, Indels: 17
0.82 0.13 0.06
Matches are distributed among these distances:
156 3 0.01
157 20 0.08
158 80 0.32
159 139 0.56
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GGCAGCAGGATCGACAGCACACAGGGGGGACCGAACTGATCCTCGGCTTGCGCATTCTGCCTCTC
CGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCACCAGCCAGACCGAGGGTTGC
Found at i:19512090 original size:512 final size:513
Alignment explanation
Indices: 19510846--19512287 Score: 2404
Period size: 512 Copynumber: 2.8 Consensus size: 513
19510836 GACCAGGTCG
* * * * * * * * *
19510846 ATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCACCCGGACACCCATTTCGTGGGTTG
1 ATCCCCGGCTTACGCATTCTGCCTGTCCGGCCGACTGAGCGCCTGTACGCTCATTTCGTGGGTTG
** *
19510911 GCTTAGGTGTAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCAAGGGTTGTGGCAGCGGGA
66 GCTTAGGAATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGA
*
19510976 TCGACAGCACACAGAGGGGGACCGAACTGATTCCTGGCTTGTGCATTATGCCTTTTCGACCGGCT
131 TCGACAGCACACAGAGGGGGACCGAACTGATTCCTGGCTTGCGCATTATGCCTTTTCGACCGGCT
*
19511041 CAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTACGCATACGAAGTTCATTCCCAGTCTAAGATC
196 CAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ***
19511106 AGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACATATAAGGGACCGGGCTGATCCTCAG
261 AGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGACCGGGCTGATCCTCAG
*
19511171 CTTGTGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
326 CTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
19511236 ATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTTTGATCGGTTCGGATCG
391 ATACG-AGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTTTGATCAGTTCGGACCG
* *
19511301 AGTGTTGCGGTAGTAGGACAGGCAGTAGGATCGACAGCACACAGGAGGGGATCGAACCG
455 AGTGTTGCGGTAGCAGGACAGGCAGTAGGATCGACAGCACACAGGAGGGGATCGAACCA
*
19511360 ATCCCCGGCTTACGCATTCTGCCTGTCTC-ACCGACTGAGCGCCTGTACGCTCATTTCGTGGGTT
1 ATCCCCGGCTTACGCATTCTGCCTGTC-CGGCCGACTGAGCGCCTGTACGCTCATTTCGTGGGTT
19511424 GGCTTAGGAATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGG
65 GGCTTAGGAATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGG
19511489 ATCGACAGCACACAGAGGGGGACCGAACTGATTCCTGGCTTGCGCATTATGCCTTTTCGACCGGC
130 ATCGACAGCACACAGAGGGGGACCGAACTGATTCCTGGCTTGCGCATTATGCCTTTTCGACCGGC
19511554 TCAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGAT
195 TCAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGAT
19511619 CAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGACCGGGCTGATCCTCA
260 CAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGACCGGGCTGATCCTCA
19511684 GCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
325 GCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
*
19511749 CATACGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTTTGATCAGTTCGGACCG
390 CATACGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTTTGATCAGTTCGGACCG
19511814 AGTGTTGCGGTAGCAGGACAGGCAGTAGGATCGACAGCACACAGG-GGGGATCGAACCA
455 AGTGTTGCGGTAGCAGGACAGGCAGTAGGATCGACAGCACACAGGAGGGGATCGAACCA
* *
19511872 ATCCCCGGCTTGCGCATTCTGCCTGTCCGGCCGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTACGCATTCTGCCTGTCCGGCCGACTGAGCGCCTGTACGCTCATTTCGTGGGTTG
*
19511937 GCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGA
66 GCTTAGGAATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGA
* *
19512002 TCGACAGCACGCAGAGGGGGACC-AGGCTGATTCCTGGCTTGCGCATTATGCCTTTTCGACCGGC
131 TCGACAGCACACAGAGGGGGACCGA-ACTGATTCCTGGCTTGCGCATTATGCCTTTTCGACCGGC
* *
19512066 TCAGTGCCCGCACGCTCATTTCGTGTGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGAT
195 TCAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
19512131 CAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGACTGAGCCGGTCCCCG
260 CAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGACCGGGCTGATCCTCA
* ** * * * *
19512196 GCTTGCGCATTCTGTATCTTCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
325 GCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
*
19512261 CATAGGGAGTTCATTCCATGTCTAAGC
390 CATA-CGAGTTCATTCCATGTCTAAGC
19512288 CCCAGTCGGA
Statistics
Matches: 876, Mismatches: 48, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
511 2 0.00
512 380 0.43
513 121 0.14
514 372 0.42
515 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (513 bp):
ATCCCCGGCTTACGCATTCTGCCTGTCCGGCCGACTGAGCGCCTGTACGCTCATTTCGTGGGTTG
GCTTAGGAATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGA
TCGACAGCACACAGAGGGGGACCGAACTGATTCCTGGCTTGCGCATTATGCCTTTTCGACCGGCT
CAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATC
AGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGACCGGGCTGATCCTCAG
CTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTTTGATCAGTTCGGACCGA
GTGTTGCGGTAGCAGGACAGGCAGTAGGATCGACAGCACACAGGAGGGGATCGAACCA
Found at i:19512147 original size:159 final size:157
Alignment explanation
Indices: 19511834--19512948 Score: 718
Period size: 159 Copynumber: 6.9 Consensus size: 157
19511824 TAGCAGGACA
* * * ** * *
19511834 GGCAGTAGGATCGACAGCACACAGGGGGGATC-GAACCAATCCCCGGCTTGCGCATTCTGCCTGT
1 GGCAGCAGGATCGACAGCACGCAGGGGGGA-CAG-GCTGATCCCCGGCTTGCGCATTATGCCTCT
* * * * * * * *
19511898 CCGGCCGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCA
64 TCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
19511962 TCTCTAAGCCCCAGCCAGATCGAGGGTTGT
129 -GTCTAAGCACCAGTCGGACCGAGGGTTGT
* * * *
19511992 GGCAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCTGATTCCTGGCTTGCGCATTATGCCTTT
1 GGCAGCAGGATCGACAGCACGCAG-GGGGGA-CAGGCTGATCCCCGGCTTGCGCATTATGCCTCT
* * * * * * * *
19512057 TCGACCGGCTCAGTGCCCGCACGCTCATTTCGTGTGTTGACTTACGCATACGGAGTTCATTCCCA
64 TCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
19512122 GTCTAAG-ATCAGATCGGACCGAGGGTTGC
129 GTCTAAGCACCAG-TCGGACCGAGGGTTGT
** * * * * **
19512151 GGCAGCAGGATCGACAGCACATAGGGGGGACTGAGCCGGTCCCCGGCTTGCGCATTCTGTATCTT
1 GGCAGCAGGATCGACAGCACGCAGGGGGGACAG-GCTGATCCCCGGCTTGCGCATTATGCCTCTT
* *
19512216 CGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAT
65 CGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-
* *
19512280 GTCTAAGCCCCAGTCGGACTGAGGGTTGT
129 GTCTAAGCACCAGTCGGACCGAGGGTTGT
* ** * * *
19512309 GGCAGCAGGACCGGTAGCACGCAGCGGGGGATTAGGCTAATCCCCAGCTTGCGCATTATGCCTCT
1 GGCAGCAGGATCGACAGCACGCAG-GGGGGA-CAGGCTGATCCCCGGCTTGCGCATTATGCCTCT
* * * * * *
19512374 CCGGCCGGATGAGCGCCCACACACCCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATCCCCA
64 TCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *** * *
19512439 GTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATTGGAT
129 GTCTAAGC--AC-CAG-TC-GGACC-G---AGGGTT-G-T
* * * *
19512479 CGG-ACCAAGGATTGCGACAGCAGGATCGACACCACACAGTGGGGATCGGGCCGATCCCCGGCTT
1 -GGCAGC-AGGA-T-CGACAGC---A-CG--------CAGGGGGGA-CAGGCTGATCCCCGGCTT
* * * * ** * * *
19512543 ACGCATTCTGCCCCTCCGATCGGCTCAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
49 GCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATA
* * ** *
19512608 GGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
114 CGGAGTTCATTCCCA-GTCTAAGCACCAGTCGGACCGAGGGTTGT
** * * * * **
19512652 GGCAGTGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCTTGGCTTGCGCATTATGCCTCT
1 GGCAGCAGGATCGACAGCACGCAG-GGGGGACAGGCT-GATCCCCGGCTTGCGCATTATGCCTCT
* * * * * *
19512717 TCGGCCGGCTCAACGCCCGCATGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCA
64 TCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * **
19512782 GTCTAAG-ATCTA-ACAGGACCGAGGGTTAC
129 GTCTAAGCA-CCAGTC-GGACCGAGGGTTGT
* * * * * * * *
19512811 GGTAGCAAGATTGACAGCACACTGGGGGGACGAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
1 GGCAGCAGGATCGACAGCACGCAGGGGGGAC-AGGCTGATCCCCGGCTTGCGCATTATGCCTCTT
* * * * * * * *
19512876 CGACCGGTTGAGCGCTCGCATGCTCGTTTCTTGGGTTGGCTTAGGCATACAGAGTTCATT-CCAT
65 CGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-
19512940 GTCTAAGCA
129 GTCTAAGCA
19512949 TATAGAGTTC
Statistics
Matches: 735, Mismatches: 175, Indels: 93
0.73 0.17 0.09
Matches are distributed among these distances:
157 8 0.01
158 238 0.32
159 327 0.44
160 11 0.01
161 1 0.00
162 2 0.00
163 2 0.00
164 1 0.00
165 1 0.00
166 2 0.00
167 1 0.00
168 4 0.01
169 1 0.00
170 9 0.01
171 6 0.01
172 5 0.01
173 7 0.01
174 1 0.00
175 4 0.01
176 1 0.00
177 2 0.00
178 1 0.00
179 2 0.00
180 1 0.00
181 1 0.00
182 1 0.00
183 3 0.00
184 89 0.12
185 3 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
GGCAGCAGGATCGACAGCACGCAGGGGGGACAGGCTGATCCCCGGCTTGCGCATTATGCCTCTTC
GGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCACCAGTCGGACCGAGGGTTGT
Found at i:19512361 original size:317 final size:317
Alignment explanation
Indices: 19511834--19512947 Score: 1151
Period size: 317 Copynumber: 3.4 Consensus size: 317
19511824 TAGCAGGACA
* * * *
19511834 GGCAGTAGGATCGACAGCACACAGGGGGGATCGAACCAATCCCCGGCTTGCGCATTCTGCCTGTC
1 GGCAGCAGGATCGACAGCACACAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * * * *
19511899 CGGCCGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATC
66 CGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * *
19511964 TCTAAGCCCCAGCCAGA-TCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCAGG
131 TCTAAGCCCCAGCCGGACT-GAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGA-CAGG
* * * * * * *
19512028 CTGATTCCTGGCTTGCGCATTATGCCTTTTCGACCGGCTCAGTGCCCGCACGCTCATTTCGTGTG
194 CTGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
19512093 TTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTTGC
259 TTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCGAGATCGGACCGAGGGTTGC
* * **
19512151 GGCAGCAGGATCGACAGCACATAGGGGGGA-CTGAGCCGGTCCCCGGCTTGCGCATTCTGTATCT
1 GGCAGCAGGATCGACAGCACACAGGGGGGATC-GAGCCGATCCCCGGCTTGCGCATTCTGCCTCT
* *
19512215 TCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 CCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* * * * *
19512280 GTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGGTAGCACGCAGCGGGGGATTAGG
130 GTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGA-CAGG
* ** * * * * * *
19512345 CTAATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGATGAGCGCCCACACACCCGTTTCATGGG
194 CTGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
* * * * * * *
19512410 TTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATT
259 TTGACTTACGCATACGGAGTTCATTCCCAGTCTAAG--ATC-GAG---A-T--CGGAC--CGA--
* *
19512475 GGATCGGACC
311 GGGT-TG--C
* * * * *
19512485 AAGGATTGCGACAGCAGGATCGACACCACACAGTGGGGATCGGGCCGATCCCCGGCTTACGCATT
1 ---G---GC-A-G-CAGGATCGACAGCACACAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATT
* * * *
19512550 CTGCCCCTCCGATCGGCTCAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
57 CTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
* * * *
19512615 CATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGG
122 CATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGG
* * * * *
19512680 GGACCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCATGCTCGT
187 GGACAGGCT-GATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGT
* * *
19512745 TTCATGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCTA-A-CAGGACCGAGGGT
251 TTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCGAGATC-GGACCGAGGGT
*
19512808 TAC
315 TGC
* * * *
19512811 GGTAGCAAGATTGACAGCACACTGGGGGGA-CGAGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
1 GGCAGCAGGATCGACAGCACACAGGGGGGATCGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * * **
19512875 CCGACCGGTTGAGCGCTCGCATGCTCGTTTCTTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
65 CCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
19512940 GTCTAAGC
130 GTCTAAGC
19512948 ATATAGAGTT
Statistics
Matches: 646, Mismatches: 119, Indels: 64
0.78 0.14 0.08
Matches are distributed among these distances:
316 3 0.00
317 359 0.56
318 1 0.00
319 3 0.00
320 1 0.00
321 2 0.00
323 1 0.00
324 1 0.00
325 1 0.00
326 1 0.00
327 3 0.00
329 5 0.01
331 5 0.01
332 2 0.00
333 2 0.00
334 1 0.00
336 1 0.00
337 1 0.00
340 3 0.00
341 3 0.00
342 3 0.00
343 243 0.38
344 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (317 bp):
GGCAGCAGGATCGACAGCACACAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
CGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
TCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACAGGCT
GATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTT
GACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCGAGATCGGACCGAGGGTTGC
Found at i:19512656 original size:660 final size:664
Alignment explanation
Indices: 19511470--19512948 Score: 1802
Period size: 660 Copynumber: 2.2 Consensus size: 664
19511460 CCAGCCAGAT
* * * * * * *
19511470 CGAGGGTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGACCGAACTGATTCCTGGCTTGCGCA
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACATAG-GGGGGA-CGAGCCGATCCCCGGCTTGCGCA
* * * * * * *
19511535 TTATGCCTTTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTACGCATACGGAG
64 TTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * *
19511600 TTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAG
129 TTCATT-CCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAG
* * * * * * * * *
19511663 GGGGGACCGGGCTGATCCTCAGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
193 GGGGGACCAGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGATGAGCGCCCACACACC
* * * *
19511728 CGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
258 CGTTTCATGGGTTGACTTAGGCATACGAGTTCATCCCATGTCTAAGCAAACGGAGTTCATTCCCA
** * * * *
19511793 GTCTTTGATCAGTTCGGACCGAGTGTTGCGGTAGCAGGACAGGCAGTAGGATCGACAGCACACAG
323 GTCTAAGATCAGATCGGACCAAGTGAT---GTAGCA-GACAGGCA--AGGATCGACACCACACAG
* ** * * * * *
19511858 GGGGGATCGAACCAATCCCCGGCTTGCGCATTCTGCCTGTCCGGCCGACTGAGCGCCTGTACGCT
382 GGGGGATCGAACCAATCCCCGGCTTACGCATTCTGCCCCTCCGACCGACTCAGCGCCCGCACGCC
* * *
19511923 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGG
447 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAACCAGACCGAGGG
*
19511988 TTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCT-GATTCC-TGGCTTGCGCATTAT
512 TTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACC-GGCTCGA-TCCTTGGCTTGCGCATTAT
* ** * *
19512051 GCCTTTTCGACCGGCTCAGTGCCCGCACGCTCATTTCGTGTGTTGACTTACGCATACGGAGTTCA
575 GCCTCTTCGACCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTACGCATACGGAGTTCA
19512116 TTCCCAGTCTAAGATC-AGATC-GGAC
640 TTCCCAGTCTAAGATCTA-A-CAGGAC
*
19512141 CGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGACTGAGCCGGTCCCCGGCTTGCGCAT
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGAC-GAGCCGATCCCCGGCTTGCGCAT
** * * *
19512206 TCTGTATCTTCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
65 TCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* * * ** *
19512271 TCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCAGGACCGGTAGCACGCAGCG
130 TCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAG-G
** *
19512335 GGGGATTAGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGATGAGCGCCCACACACCC
194 GGGGACCAGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGATGAGCGCCCACACACCC
19512400 GTTTCATGGGTTGACTTAGGCATACTGAGTTCATCCCCA-GTCTAAGCAAACGGAGTTCATTCCC
259 GTTTCATGGGTTGACTTAGGCATAC-GAGTTCAT-CCCATGTCTAAGCAAACGGAGTTCATTCCC
** *
19512464 AGTCTAAGATTGGATCGGACCAAG-GAT-T-GC-GACA-GC-AGGATCGACACCACACAGTGGGG
322 AGTCTAAGATCAGATCGGACCAAGTGATGTAGCAGACAGGCAAGGATCGACACCACACAGGGGGG
** * * * *
19512523 ATCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGATCGGCTCAGTGCCCGCACGCCCGTTT
387 ATCGAACCAATCCCCGGCTTACGCATTCTGCCCCTCCGACCGACTCAGCGCCCGCACGCCCGTTT
*
19512588 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC-GAACCGAGGGTTGT
452 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAACCAG-ACCGAGGGTTGT
* * *
19512652 GGCAGTGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCTTGGCTTGCGCATTATGCCTCT
516 GGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGCTCGATCCTTGGCTTGCGCATTATGCCTCT
* * * * *
19512717 TCGGCCGGCTCAACGCCCGCATGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCA
581 TCGACCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCA
19512782 GTCTAAGATCTAACAGGAC
646 GTCTAAGATCTAACAGGAC
* * * *
19512801 CGAGGGTTACGGTAGCAAGATTGACAGCACACT-GGGGGGACGAGGCCGATCCCCGGCTTGCGCA
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACA-TAGGGGGGACGA-GCCGATCCCCGGCTTGCGCA
* * * * * *
19512865 TTCTGCCTCTCCGACCGGTTGAGCGCTCGCATGCTCGTTTCTTGGGTTGGCTTAGGCATACAGAG
64 TTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
19512930 TTCATTCCATGTCTAAGCA
129 TTCATTCCATGTCTAAGCA
19512949 TATAGAGTTC
Statistics
Matches: 692, Mismatches: 103, Indels: 37
0.83 0.12 0.04
Matches are distributed among these distances:
659 10 0.01
660 379 0.55
661 2 0.00
663 2 0.00
664 4 0.01
666 2 0.00
667 1 0.00
669 4 0.01
670 122 0.18
671 113 0.16
672 50 0.07
673 3 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (664 bp):
CGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGACGAGCCGATCCCCGGCTTGCGCATT
CTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGGGG
GGACCAGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGATGAGCGCCCACACACCCGT
TTCATGGGTTGACTTAGGCATACGAGTTCATCCCATGTCTAAGCAAACGGAGTTCATTCCCAGTC
TAAGATCAGATCGGACCAAGTGATGTAGCAGACAGGCAAGGATCGACACCACACAGGGGGGATCG
AACCAATCCCCGGCTTACGCATTCTGCCCCTCCGACCGACTCAGCGCCCGCACGCCCGTTTCATG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAG
CGGGACCGACAGCACGCAGAGGGGGACCGGCTCGATCCTTGGCTTGCGCATTATGCCTCTTCGAC
CGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTA
AGATCTAACAGGAC
Found at i:19512748 original size:343 final size:343
Alignment explanation
Indices: 19512106--19512788 Score: 922
Period size: 343 Copynumber: 2.0 Consensus size: 343
19512096 ACTTACGCAT
* * * *
19512106 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGATTGCGACAGCAGGATCGACACCAC
* * * * * * * *
19512171 ATAGGGGGGACTGAGCCGGTCCCCGGCTTGCGCATTCTGTATCTTCGGCCGGCTGAGCGCCCGCA
66 ACAGGGGGGACTGAGCCGATCCCCGGCTTACGCATTCTGCACCTCCGACCGGCTCAGCGCCCGCA
** * *
19512236 CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTG
131 CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCG
* * **
19512301 AGGGTTGTGGCAGCAGGACCGGTAGCACGCAGCGGGGGATTAGGCTAATCCCCAGCTTGCGCATT
196 AGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCAGGCTAATCCCCAGCTTGCGCATT
* *
19512366 ATGCCTCTCCGGCCGGATGAGCGCCCACACACCCGTTTCATGGGTTGACTTAGGCATACT-GAGT
261 ATGCCTCTCCGGCCGGATCAACGCCCACACACCCGTTTCATGGGTTGACTTAGGCATA-TGGAGT
19512430 TCATCCCCAGTCTAAGCAA
325 TCATCCCCAGTCTAAGCAA
**
19512449 ACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGATTGCGACAGCAGGATCGACACCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGATTGCGACAGCAGGATCGACACCAC
* * * * *
19512514 ACAGTGGGGA-TCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGATCGGCTCAGTGCCCGC
66 ACAGGGGGGACT-GAGCCGATCCCCGGCTTACGCATTCTGCACCTCCGACCGGCTCAGCGCCCGC
19512578 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACC
130 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACC
** * * ***
19512643 GAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGACC-GGGTCGATCCTTGGCTTGCGCA
195 GAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCAGGCT-AATCCCCAGCTTGCGCA
* * * ** * *
19512707 TTATGCCTCTTCGGCCGGCTCAACGCCCGCATGCTCGTTTCATGGGTTGACTTATGCATATGGAG
259 TTATGCCTCTCCGGCCGGATCAACGCCCACACACCCGTTTCATGGGTTGACTTAGGCATATGGAG
*
19512772 TTCATTCCCAGTCTAAG
324 TTCATCCCCAGTCTAAG
19512789 ATCTAACAGG
Statistics
Matches: 293, Mismatches: 44, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
342 5 0.02
343 288 0.98
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (343 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGATTGCGACAGCAGGATCGACACCAC
ACAGGGGGGACTGAGCCGATCCCCGGCTTACGCATTCTGCACCTCCGACCGGCTCAGCGCCCGCA
CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCG
AGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCAGGCTAATCCCCAGCTTGCGCATT
ATGCCTCTCCGGCCGGATCAACGCCCACACACCCGTTTCATGGGTTGACTTAGGCATATGGAGTT
CATCCCCAGTCTAAGCAA
Found at i:19512948 original size:501 final size:501
Alignment explanation
Indices: 19512062--19512975 Score: 1102
Period size: 501 Copynumber: 1.8 Consensus size: 501
19512052 CCTTTTCGAC
* * *
19512062 CGGCTCAGTGCCCGCACGCTCATTTCGTGTGTTGACTTACGCATACGGAGTTCATTCCCAGTCTA
1 CGGCTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
19512127 AGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGGACTGAGCCGGTC
66 AGACCAGACCGAACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGGGGGGACCGAGCCGATC
* * * * *
19512192 CCCGGCTTGCGCATTCTGTATCTTCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
131 CCCGGCTTGCGCATTATGCATCTTCGGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACT
* * * ** *
19512257 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCG
196 TAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGACGGACCGAGGGTTACGGCAGCAAGACCG
** * ** * *
19512322 GTAGCACGCAGCGGGGGATTAGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGATGAG
261 ACAGCACACAGCGGGGGACGAGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGATGAG
* *
19512387 CGCCCACACACCCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAGCAAACG
326 CGCCCACACACCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAAACA
19512452 GAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGATTGCGACAGCAGGATCGACACCACACA
391 GAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGATTGCGACAGCAGGATCGACACCACACA
19512517 GTGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGAT
456 GTGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGAT
* * * *
19512563 CGGCTCAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCT
1 CGGCTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCA-GTCT
* * ** * * * *
19512627 AAGCCCCA-ACCGAACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGACCGGGTCG
65 AAG-ACCAGACCGAACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAG-GGGGGACCGAGCCG
** * * *
19512691 ATCCTTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCATGCTCGTTTCATGGGTTG
128 ATCCCCGGCTTGCGCATTATGCATCTTCGGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTG
* * * * *
19512756 ACTTATGCATATGGAGTTCATTCCCA-GTCTAAGATCTA-ACAGGACCGAGGGTTACGGTAGCAA
193 ACTTAGGCATAGGGAGTTCATT-CCATGTCTAAGACCCAGAC-GGACCGAGGGTTACGGCAGCAA
** * * * *
19512819 GATTGACAGCACACTG-GGGGGACGAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGG
256 GACCGACAGCACACAGCGGGGGACGAGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGG
* * * ** * * * *
19512883 TTGAGCGCTCGCATGCTCGTTTCTTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAG
321 ATGAGCGCCCACACACCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAG
* * *
19512947 CATATAGAGTTCATTCCTAGTCTAAGATT
385 CAAACAGAGTTCATTCCCAGTCTAAGATT
19512976 TTGAGCCACA
Statistics
Matches: 337, Mismatches: 70, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
500 6 0.02
501 205 0.61
502 123 0.36
503 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (501 bp):
CGGCTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTA
AGACCAGACCGAACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGGGGGGACCGAGCCGATC
CCCGGCTTGCGCATTATGCATCTTCGGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACT
TAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGACGGACCGAGGGTTACGGCAGCAAGACCG
ACAGCACACAGCGGGGGACGAGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGATGAG
CGCCCACACACCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAAACA
GAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGATTGCGACAGCAGGATCGACACCACACA
GTGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGAT
Found at i:19512949 original size:26 final size:26
Alignment explanation
Indices: 19512920--19512972 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19512910 GTTGGCTTAG
19512920 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
19512946 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
19512972 G
1 G
19512973 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19513692 original size:26 final size:26
Alignment explanation
Indices: 19513656--19513706 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19513646 TGACTTAGGT
19513656 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
19513682 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
19513707 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:19514144 original size:158 final size:155
Alignment explanation
Indices: 19513680--19514179 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 155
19513670 CCCAGTCTAA
* * *
19513680 GCATACGGAGTTCATTCCCAGTCTAAGATTGG-ATCGGACCGAGGGTTACGGCAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGAATCGGACCGAGGGTTGCGGCAGTAGGATCAGC
* * * * *
19513744 AACACGCAAGGGGGACCGAGCCGATCCCCGATTTGCGCATTCTACCACTCCGACCGGCTGAGCAC
65 AGCACGCAAGGGGGACCG-GGCGAT-CCCGACTTGCGCATTCTACCTCTCCG-CCGGCTGAGCGC
* *
19513809 CTGCACGCCCGTTTCGTGGGTT-AGCTTAG
127 CCGCACGCTCGTTTCGTGGGTTGA-CTTAG
* * * * * ** *
19513838 GCATAGGGAATTCATTCCATGTCTAAGCCTC--AGTCGGACCGAGGGTTGTGGCAGCGGGA-CCG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCGGAATCGGACCGAGGGTTGCGGCAGTAGGATCAG
* * * * * *
19513900 CAGCATGCAAAGGGGGACCGGGCTGATCCCGACTTTCGCATTTTGCCTCTCCGGTCGGCTCAGCG
64 CAGCACGC-AAGGGGGACCGGGC-GATCCCGACTTGCGCATTCTACCTCTCC-GCCGGCTGAGCG
*
19513965 CCCGCACGCTCATTTCGTGGGTTGACTTAG
126 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
19513995 GCATACAGAGTTCATTCTTAGTCTAAGATCGGAAT-GGACCGAGGGTTGCGGCAGTAGGATCAAC
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGAATCGGACCGAGGGTTGCGGCAGTAGGATCAGC
* * *
19514059 AGCACGC-AGGAGAGATCGGGTCGATCTCC-AGCTTGCGCATTCTACCTCTCCAGCCGGTTGAGC
65 AGCACGCAAGG-GGGACCGGG-CGATC-CCGA-CTTGCGCATTCTACCTCTCC-GCCGGCTGAGC
*
19514122 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
125 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
19514153 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
19514180 CATGCGGAGT
Statistics
Matches: 277, Mismatches: 49, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
156 5 0.02
157 121 0.44
158 150 0.54
159 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGAATCGGACCGAGGGTTGCGGCAGTAGGATCAGCA
GCACGCAAGGGGGACCGGGCGATCCCGACTTGCGCATTCTACCTCTCCGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAG
Found at i:19514189 original size:26 final size:26
Alignment explanation
Indices: 19514153--19514205 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19514143 GTTGGCTTAG
19514153 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
19514179 GCATGCGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
19514205 G
1 G
19514206 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:19514498 original size:171 final size:171
Alignment explanation
Indices: 19514179--19514549 Score: 413
Period size: 171 Copynumber: 2.2 Consensus size: 171
19514169 CCATGTCTAA
* * * * *
19514179 GCATGCGGAGTTCATTCTCAGTCTAAG-ATCAGACCGGACTGAGGGTTGTGATAGCAGGACCAGC
1 GCATACGGAGTTCATTC-CAGTCTAAGCACCAGACCGGACCGAGGGTTGTGACAGCAAGACCAGC
* * * * *
19514243 AGCAAGATCGACAGCACGTAGGGGAGGATCGGACCGATCCCCAGCTTGCACATTCTGCCTCTCTG
65 AGCAAGATCGACAGCACGTAGAGGAGGATCGGACCAATCCCCAGCTTACACATTATGCCTCTCCG
** * * *
19514308 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 ACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
19514350 GCATACGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGACCGAGGGTTGTGGCAGCAAGACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCGGACCGAGGGTTGTGACAGCAAGACCAGC
* * * * * * * *
19514414 AGCAGGATCGGCAGCATGTAGAGGAGGATCGGGCTAATCCCCGGCTTACGCATTATGCCTTTCCG
65 AGCAAGATCGACAGCACGTAGAGGAGGATCGGACCAATCCCCAGCTTACACATTATGCCTCTCCG
* * *
19514479 ACCTGTTGAGCACCCGCACGCTCATTTTGTGGGTTGACTTAG
130 ACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
* *
19514521 GCATATGGAGTTCATCCCCAGTCTAAGCA
1 GCATACGGAGTTCAT-TCCAGTCTAAGCA
19514550 TACCGAGTTC
Statistics
Matches: 164, Mismatches: 33, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
170 2 0.01
171 157 0.96
172 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCAGTCTAAGCACCAGACCGGACCGAGGGTTGTGACAGCAAGACCAGCA
GCAAGATCGACAGCACGTAGAGGAGGATCGGACCAATCCCCAGCTTACACATTATGCCTCTCCGA
CCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:19514863 original size:159 final size:159
Alignment explanation
Indices: 19514586--19515365 Score: 536
Period size: 159 Copynumber: 4.9 Consensus size: 159
19514576 CAGATCGAAT
* * ** * * ** **
19514586 CGAGGGTTGTGACAGCAGGATCGGTAGCACGTAG-GGGGGACCGGGCCGATCCCTGGCTTGTACA
1 CGAGGGTTGTGGCAGCGGGATCGACAGCACATAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCA
* ** * * ** * * *
19514650 TTCTTTCTCTCCGACCGACTGAGCGCCTACACAC-CAGTTTCGTGGGTTGGCTTAGGCATAGGGA
66 TTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCTCA-TTTCATGGGTTGACTTAGGCATAGGGA
19514714 GTTCATTCCATGTCTAAGCCCCAGTCGGAC
130 GTTCATTCCATGTCTAAGCCCCAGTCGGAC
* * *
19514744 CGATGGTTGTGGCAGCGGGATCGACAGCACATAGAGGGGGACCTAGCCGATCCCCAGCTTACGCA
1 CGAGGGTTGTGGCAGCGGGATCGACAGCACATAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCA
* * * * **
19514809 TTATGTCTCTCCGGCCGACTCAGGGCCCGAACGCTCATTCCATGGGTTGACTTAGGCATACAGAG
66 TTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAGGGAG
* * ** * * *
19514874 TTCACTCCCA-GTCTATG-ATCAGACTAGAT
131 TTCA-TTCCATGTCTAAGCCCCAGTC-GGAC
* * ** * * * * **
19514903 CGGGGGTTGCGATAGCAGGATCAACAGTACATCGAGGGGGACCGAGCTTATCCCCAGCTTGCGCA
1 CGAGGGTTGTGGCAGCGGGATCGACAGCACATAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCA
* * * * * *
19514968 TTTTGCCTCTCCGGCC-AGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCACAGGGA
66 TTATGCCTCTCCGGCCGA-CTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAGGGA
* *
19515032 GTTCATTCCTTGTCTAAGCCCCAGTCGAAC
130 GTTCATTCCATGTCTAAGCCCCAGTCGGAC
* * * * ** * * * *
19515062 TGAGGGTTGTGGCATCGAGACCGACAGCATGTAG-GGGGGACAGGGCCGATCCCCGGCTTGTGCA
1 CGAGGGTTGTGGCAGCGGGATCGACAGCACATAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCA
* * * * * * **
19515126 TTATGCCTCTTCGGCGGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACAGAG
66 TTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAGGGAG
* *** * *
19515191 TTTATTCC-TAGT-TAA-AATCAGACCAGAC
131 TTCATTCCAT-GTCTAAGCCCCAG-TCGGAC
* ** ** * ** * * *
19515219 CGAGGGTTGCGATAGCAAGATTGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCA
1 CGAGGGTTGTGGCAGCGGGATCGACAGCACATAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCA
* * * * * * * * **
19515283 TTTTGCCTCTCCGGTCGATTGAGCGCCCGTACGTTCATTTCGTGGGTTGGCTTAGGCATACAGAG
66 TTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAGGGAG
*
19515348 TCCATTCCATGTCTAAGC
131 TTCATTCCATGTCTAAGC
19515366 ATACGGAGTT
Statistics
Matches: 471, Mismatches: 138, Indels: 25
0.74 0.22 0.04
Matches are distributed among these distances:
156 3 0.01
157 117 0.25
158 123 0.26
159 218 0.46
160 10 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCGGGATCGACAGCACATAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCA
TTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAGGGAG
TTCATTCCATGTCTAAGCCCCAGTCGGAC
Found at i:19515363 original size:315 final size:317
Alignment explanation
Indices: 19514687--19515365 Score: 837
Period size: 315 Copynumber: 2.1 Consensus size: 317
19514677 TACACACCAG
* *
19514687 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGATGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTT
* * ** *
19514752 GTGGCAGCGGGATCGACAGCACATAGAGGGGGACCTAGCCGATCCCCAGCTTACGCATTATGTCT
66 GTGGCAGCGAGACCGACAGCACATAGAGGGGGACAGAGCCGATCCCCAGCTTACGCATTATGCCT
**
19514817 CTCCGGCCGACTCAGGGCCCGAACGCTCATTCCATGGGTTGACTTAGGCATACAGAGTTCACTCC
131 CTCCGGCCGACTCAACGCCCGAACGCTCATTCCATGGGTTGACTTAGGCATACAGAGTTCACTCC
** * * * *
19514882 CAGTCTATGATCAGACTAGATCGGGGGTTGCGATAGCAGGATCAACAGTACATCGAGGGGGACCG
196 CAGTCTAAAATCAGACCAGACCGAGGGTTGCGATAGCAAGATCAACAG-ACATCGAGGGGGACCG
** *
19514947 AGCTTATCCCCAGCTTGCGCATTTTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCTCA
260 AGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCA
* * *
19515005 TTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCTTGTCTAAGCCCCAGTCGAACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTT
* ** * * **
19515070 GTGGCATCGAGACCGACAGCATGTAG-GGGGGACAGGGCCGATCCCCGGCTTGTGCATTATGCCT
66 GTGGCAGCGAGACCGACAGCACATAGAGGGGGACAGAGCCGATCCCCAGCTTACGCATTATGCCT
* * * * * * * * *
19515134 CTTCGGCGGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTTATTCC
131 CTCCGGCCGACTCAACGCCCGAACGCTCATTCCATGGGTTGACTTAGGCATACAGAGTTCACTCC
* ** *
19515199 TAGT-TAAAATCAGACCAGACCGAGGGTTGCGATAGCAAGATTGACAG-CA-CGCAGGGGGGATC
196 CAGTCTAAAATCAGACCAGACCGAGGGTTGCGATAGCAAGATCAACAGACATCG-A-GGGGGACC
* * * * * *
19515261 GGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTC-GATTGAGCGCCCGTACGTTCA
259 GAGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGGCCAG-CTGAGCGCCCGCACGCTCA
** *
19515320 TTTCGTGGGTTGGCTTAGGCATACAGAGTCCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
19515366 ATACGGAGTT
Statistics
Matches: 306, Mismatches: 52, Indels: 9
0.83 0.14 0.02
Matches are distributed among these distances:
313 2 0.01
314 4 0.01
315 96 0.31
316 35 0.11
317 88 0.29
318 81 0.26
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (317 bp):
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTT
GTGGCAGCGAGACCGACAGCACATAGAGGGGGACAGAGCCGATCCCCAGCTTACGCATTATGCCT
CTCCGGCCGACTCAACGCCCGAACGCTCATTCCATGGGTTGACTTAGGCATACAGAGTTCACTCC
CAGTCTAAAATCAGACCAGACCGAGGGTTGCGATAGCAAGATCAACAGACATCGAGGGGGACCGA
GCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCA
Found at i:19515531 original size:26 final size:26
Alignment explanation
Indices: 19515493--19515546 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
19515483 CCTAACCGGC
19515493 AGCATACGAAGTTCATCCCCAGTCTA
1 AGCATACGAAGTTCATCCCCAGTCTA
*
19515519 AGCATAC-AGAGTTCATTCCCAGTCTA
1 AGCATACGA-AGTTCATCCCCAGTCTA
19515545 AG
1 AG
19515547 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (26 bp):
AGCATACGAAGTTCATCCCCAGTCTA
Found at i:19515725 original size:26 final size:26
Alignment explanation
Indices: 19515676--19515728 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19515666 GTTAGCTTAG
* *
19515676 GCATACGGAGTTCTTTCCATGTCTAA
1 GCATACGGAGCTCATTCCATGTCTAA
19515702 GCATACGGAGCTCATTCACA-GTCTAA
1 GCATACGGAGCTCATTC-CATGTCTAA
19515728 G
1 G
19515729 AGTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGTCTAA
Found at i:19515801 original size:339 final size:339
Alignment explanation
Indices: 19515181--19515802 Score: 872
Period size: 339 Copynumber: 1.8 Consensus size: 339
19515171 GTTGACTTAT
* * ** * * *
19515181 GCATACAGAGTTTATTCCTAGTTAAAATCAGACCAGACCGAGGGTTGCGATAGCAAGATTGACAG
1 GCATACAGAGTTCATTCCCAGTTAAAATCAGACCAGACAAAGGGTTGAGACAGCAAGATCGACAG
* * * * *
19515246 CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGATTGAGCGCCC
66 CACGCAGGGGGGACCGGGCCGATCCCCGACTTCCGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
* * * *
19515311 GTACGTTCATTTCGTGGGTTGGCTTAGGCATACAGAGTCCATTCCATGTCTAAGCATACGGAGTT
131 GCACGCTCATTTCGTGGGTTAGCTTAGGCATACAGAGTCCATTCCATGTCTAAGCATACGGAGCT
* * * * * * * *
19515376 CATTCCAGTGTAAGATTTTGAGCCACGGTGCACATGTTGGGCTCGGGCATGTACTGGTGTCGTAT
196 CATTCCAGTCTAAGAGTTTAAGCCACGGTGCACATGCTGGGCTCAGGCATGTACTGCTGCCGCAT
19515441 TTTTTTCACCCGGGGCACCATCGCCAGAGCATTGTCGGAGAGCCTAACCGGCAGCATACGAAGTT
261 TTTTTTCACCCGGGGCACCATCGCCAGAGCATTGTCGGAGAGCCTAACCGGCAGCATACGAAGTT
19515506 CATCCCCAGTCTAA
326 CATCCCCAGTCTAA
* *
19515520 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GACAAAGGGTTGTAG-CAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGT-TAAAATCAGACCAGACAAAGGGTTG-AGACAGCAAGATCGAC
* *
19515583 AGCACGTA-GGGGGACCGGGCCGATCCCCGACTTCCGCATTCTGCCTCTCCGGTCGACTGAGCGT
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTCCGCATTCTGCCTCTCCGGTCGACTGAGCGC
* * * *
19515647 CCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGCATACGGAG
129 CCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACAGAGTCCATTCCATGTCTAAGCATACGGAG
* *
19515712 CTCATTCACAGTCTAAGAGTTTAAGCCACGGTGCATATGCTGGGCTCAGGCATGTGCTGCTGCCG
194 CTCATTC-CAGTCTAAGAGTTTAAGCCACGGTGCACATGCTGGGCTCAGGCATGTACTGCTGCCG
**
19515777 CATTTTTTTTGCCCGGGGCACCATCG
258 CATTTTTTTCACCCGGGGCACCATCG
19515803 TAGGAGAGCC
Statistics
Matches: 244, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
338 114 0.47
339 118 0.48
340 12 0.05
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (339 bp):
GCATACAGAGTTCATTCCCAGTTAAAATCAGACCAGACAAAGGGTTGAGACAGCAAGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGACTTCCGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
GCACGCTCATTTCGTGGGTTAGCTTAGGCATACAGAGTCCATTCCATGTCTAAGCATACGGAGCT
CATTCCAGTCTAAGAGTTTAAGCCACGGTGCACATGCTGGGCTCAGGCATGTACTGCTGCCGCAT
TTTTTTCACCCGGGGCACCATCGCCAGAGCATTGTCGGAGAGCCTAACCGGCAGCATACGAAGTT
CATCCCCAGTCTAA
Found at i:19516875 original size:158 final size:158
Alignment explanation
Indices: 19516436--19516897 Score: 527
Period size: 158 Copynumber: 2.9 Consensus size: 158
19516426 GGATTGGACA
* * * * * * *
19516436 GAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGTATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATT
* *
19516501 CTGCCTCTCCGG-CTGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 CTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGT
* *
19516565 TCATTCCATGTCTAAGCCA-CAGCCA-AACC
130 TCATTCCATGTCTAAG--ATCAGACATGACC
* * * * *
19516594 GAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCCTAGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTGCGCAT
* * * * * * * * * * * *
19516659 TATGCCTCTTCGATCGGCTCATCTCCTGCATGCTCATTTCGTGAGTTGACTTATGCATATGGAGT
65 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGT
19516724 TCATTCC-TAGTCTAAGATCAGACATGACC
130 TCATTCCAT-GTCTAAGATCAGACATGACC
* * * * *
19516753 GAGGGTTGTGGCAGCAGGATCGACAACACACAGGGAGGATCAGGCCGATCCCCAACTTGCGCATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATT
* * *
19516818 CTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCATAGGCATACGGAGTT
66 CTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTT
19516883 CATTCCATGTCTAAG
131 CATTCCATGTCTAAG
19516898 CATACAGAGT
Statistics
Matches: 245, Mismatches: 53, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 123 0.50
159 120 0.49
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATT
CTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTT
CATTCCATGTCTAAGATCAGACATGACC
Found at i:19516907 original size:26 final size:26
Alignment explanation
Indices: 19516871--19516923 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19516861 GTTGGCATAG
*
19516871 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
19516897 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19516923 G
1 G
19516924 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19519339 original size:159 final size:158
Alignment explanation
Indices: 19518840--19519339 Score: 473
Period size: 159 Copynumber: 3.2 Consensus size: 158
19518830 ATCAGTCTAA
* * * * *
19518840 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGATAGGAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGTA
** * * * * * * * *
19518905 ACACGCATTGGGGATTGGGTTGATCCT-TAGCTTACGTATTCTGCCACTCCGATCGACTGAGCGC
66 ACACGCAGAGGGGATCGGATCGATCCTCGA-CTTGCGTATTCTACCTCTCCGATCGGCTGAGCGC
* *
19518969 CCACATG-TCGGTTTCATGGGTTGGCTTAG
130 CCGCACGCTC-GTTTCATGGGTTGGCTTAG
** ** * *
19518998 GCATAGGGAG-T--TT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCAGGATTGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGG
* * * * * *
19519058 TAGCACGCAGAGGGGGATC-GATTCGATCC-CTGGCTAGCGCATTATACCTCTCCGATCGGCTCA
64 TAACACGCAGA-GGGGATCGGA-TCGATCCTC-GACTTGCGTATTCTACCTCTCCGATCGGCTGA
* * *
19519121 GTGCCTGCACGCTCGTTTCATGGGTTGCCTTAG
126 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * **
19519154 GCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGTA
* * *
19519219 ACACGCACGAGGGGATCGGACCGGTCCTCGACTTGCGTATTCTACCTCTCCG-GCTGGCTGAGCG
66 ACACGCA-GAGGGGATCGGATCGATCCTCGACTTGCGTATTCTACCTCTCCGATC-GGCTGAGCG
*
19519283 CCCGCACGCTCGTTTCTTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
19519313 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
19519340 CATATGGAGT
Statistics
Matches: 271, Mismatches: 54, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
154 3 0.01
155 43 0.16
156 69 0.25
157 4 0.01
158 15 0.06
159 129 0.48
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGTA
ACACGCAGAGGGGATCGGATCGATCCTCGACTTGCGTATTCTACCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:19519738 original size:26 final size:26
Alignment explanation
Indices: 19519702--19519754 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19519692 GTTGACTTAG
*
19519702 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
19519728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19519754 G
1 G
19519755 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19520146 original size:159 final size:158
Alignment explanation
Indices: 19519728--19520227 Score: 516
Period size: 159 Copynumber: 3.2 Consensus size: 158
19519718 CCTAGTCTAA
* *
19519728 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * **
19519793 GCA--CACAGGGGGGATCAGGCCGATCCTTGGCTTACGCATTCTGCCTCTCTGATCGACTGAGCA
65 GCACGCACA-GGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGATTGGCTGAGTG
* *
19519856 CCCGCACG-TCCGTTTCCTAGGTTGGCTTAG
129 CCCGCACGCT-CGTTTCATGGGTTGGCTTAG
* * ** * * *
19519886 GCATAGGGAG-T--TT-CCATGTTTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGTAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA-CGGACCGAGGGTTGCGGCAGTAGGATCGA
* * * * * * *
19519946 TAGCACGTAGAGGGGGATCGAGCCAATCCCTGGC-TAGCGCATTATGCCTCTCCGATTGGCTCAG
63 CAGCACGCACAGGGGGATCGGGCCGATCCCTGGCTTA-CGCATTCTGCCTCTCCGATTGGCTGAG
* *
19520010 TGCCCGTACGCTCATTTCATGGGTTGGCTTAG
127 TGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
19520042 GCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTACAGCAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGCAGTAGGATCGACA
* **
19520107 GCACGCACAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGC
65 GCACGCACAGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGATTGGCTGAGTGC
* **
19520172 CCGCACACTCGTTTCATGGGTTATCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
19520201 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
19520228 CATATGGAGT
Statistics
Matches: 273, Mismatches: 55, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
154 3 0.01
155 38 0.14
156 77 0.28
157 5 0.02
158 14 0.05
159 131 0.48
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGGCAGTAGGATCGACAG
CACGCACAGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGATTGGCTGAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:19520252 original size:26 final size:26
Alignment explanation
Indices: 19520201--19520253 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19520191 GTTATCTTAG
*
19520201 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGACTAA
*
19520227 GCATATGGAGTTCATTCCCA-GACTAA
1 GCATACGGAGTTCATT-CCATGACTAA
19520253 G
1 G
19520254 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGACTAA
Found at i:19520980 original size:159 final size:158
Alignment explanation
Indices: 19520817--19521106 Score: 359
Period size: 158 Copynumber: 1.8 Consensus size: 158
19520807 AGTCGGCCCA
* * * * **
19520817 AGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGG-GGGACCGGGCCGATCACCGGCTTGTGCAT
1 AGGGTTGCGGTAGCAGGACCGACAGCACGCAG-GGAGGGACCGGGCAGATC-CCGACTTGCACAT
* * *
19520881 TATGCCTCTCCGGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGG-TTGACTTAGGCATACAGAG
64 TATGCCTCTCCGATCGGCTCAACGCCCGAACGCTCATTTCGTGGGTTTG-CTTAGGCATACAGAG
19520945 TTCAGTCCCAGTCTCAGATCAGACCGAATCG
128 TTCAGTCCCAGTCTCAGATCAGACCGAATCG
* ** * * * * *
19520976 AGGGTTGCGGTAGTAGGATTGATAGCACGTAGGGAGGGATCGGGCAGGTCCCGACTTGCACATTT
1 AGGGTTGCGGTAGCAGGACCGACAGCACGCAGGGAGGGACCGGGCAGATCCCGACTTGCACATTA
* * *
19521041 TGCCTCTCCGATCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTTGTTTAGGCATACAGAGTTC
66 TGCCTCTCCGATCGGCTCAACGCCCGAACGCTCATTTCGTGGGTTTGCTTAGGCATACAGAGTTC
19521106 A
131 A
19521107 TTCCACGTCT
Statistics
Matches: 109, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
158 69 0.63
159 40 0.37
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
AGGGTTGCGGTAGCAGGACCGACAGCACGCAGGGAGGGACCGGGCAGATCCCGACTTGCACATTA
TGCCTCTCCGATCGGCTCAACGCCCGAACGCTCATTTCGTGGGTTTGCTTAGGCATACAGAGTTC
AGTCCCAGTCTCAGATCAGACCGAATCG
Found at i:19521129 original size:26 final size:26
Alignment explanation
Indices: 19521093--19521145 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19521083 GTTTGTTTAG
19521093 GCATACAGAGTTCATT-CCACGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19521119 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19521145 G
1 G
19521146 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19521319 original size:26 final size:26
Alignment explanation
Indices: 19521289--19521341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19521279 GTTGACTTAG
*
19521289 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
19521315 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19521341 G
1 G
19521342 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19521498 original size:183 final size:182
Alignment explanation
Indices: 19520935--19521499 Score: 598
Period size: 196 Copynumber: 3.0 Consensus size: 182
19520925 GTTGACTTAG
* * * * * *
19520935 GCATACAGAGTTCAGTCCCAGTCTCAGATCAGACCGAATCGAGGGTTGCGGTAGTAGGATT-GAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGG-TTCGAT
* * * * *
19520999 AGCACGTAGGGAGGGATCGGGCAGGTCCCGACTTGCACATTTTGCCTCTCCGATCGGCTGAA-CG
65 AGCACGCAGGG-GGGATCGGGCAGATCCCGACTTGCACATTCTACCTCTCCGATCGACT-AAGCG
* * * *
19521063 CCCGCACGCTCATTTCGTGGGTTTGTTTAGGCATACAGAGTTCATTCCACGTCTAA
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA
* *
19521119 GCATACAGAGTTTATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACAACAGTAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGG-T-------T--G--CAGCA
* * * *
19521184 GCAGGATCGATAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCCGAT
54 GCAGGTTCGATAGCACGCAGGGGGGATCGGGCAGAT-CCCGACTTGCACATTCTACCTCTCCGAT
* * * *
19521249 CGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
118 CGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTA
19521314 A
182 A
* * *
19521315 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACC-AGACCGAGGGTTGCTGCAGCAGGTTCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCAGCAGCAGGTTCGAT
* * * * **
19521379 AGCACGCAGGGGGGATCGGG-AGATCCCTGGCTTGTATATTCTACCTCTCTGGCCGACTAAGCGC
65 AGCACGCAGGGGGGATCGGGCAGATCCC-GACTTGCACATTCTACCTCTCCGATCGACTAAGCGC
*
19521443 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA
19521498 GC
1 GC
19521500 CATGACCGGA
Statistics
Matches: 317, Mismatches: 45, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
182 6 0.02
183 81 0.26
184 72 0.23
185 1 0.00
186 1 0.00
188 1 0.00
192 1 0.00
194 1 0.00
195 15 0.05
196 135 0.43
197 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (182 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGTTCGATA
GCACGCAGGGGGGATCGGGCAGATCCCGACTTGCACATTCTACCTCTCCGATCGACTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAA
Found at i:19521662 original size:26 final size:26
Alignment explanation
Indices: 19521632--19521683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19521622 TTAGCTTAGA
19521632 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
*
19521658 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
19521684 AGTTTAAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:19522723 original size:159 final size:159
Alignment explanation
Indices: 19522535--19522908 Score: 380
Period size: 159 Copynumber: 2.4 Consensus size: 159
19522525 TGGGATGGCC
* * * * * *
19522535 TAGGCATAGGGAATTCATTCC-ATGCCTAAGCCCCAGCTC-GACCGAGGGTTGTGGCA-ACGGGA
1 TAGGCATACGGAGTTCATTCCTA-GTCTAAG-ACCAGATCGGACCGAGGGTTGCGGCAGAC-GGA
* * * * * *
19522597 TCGGCAGCACGCAGAGGGGGACCGGGCCAATTCCCTG-CTTGCGCATTATACCTCTCCGGCCGAC
63 TCGACAGCACACAGAGGGGGACCGGGCC-AGTCCCCGACTTCCGCATTATACCTCTCCGACCGAC
19522661 TCAGCACCCGCACGCTCGTTTCATGGGTTGACT
127 TCAGCACCCGCACGCTCGTTTCATGGGTTGACT
*** *
19522694 TAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGTCGGATCG
1 TAGGCATACGGAGTTCATTCCTAGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGACGGATCG
* * * * * * ** * * *
19522759 ACAGTATACAGGGGGGGATCGGGTCGGTCCCCGACTTCCTTATTCTACCTCTCCGACCGGCTGAG
66 ACAGCACACAGAGGGGGACCGGGCCAGTCCCCGACTTCCGCATTATACCTCTCCGACCGACTCAG
** * *
19522824 TGCCCGCACGCTCGTTTCGTGGGTTGGCT
131 CACCCGCACGCTCGTTTCATGGGTTGACT
* *
19522853 TAGGCATACGGAGTTCATT-CTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAG
1 TAGGCATACGGAGTTCATTCCTAGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAG
19522909 CAGGACCAGT
Statistics
Matches: 179, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
158 44 0.25
159 133 0.74
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
TAGGCATACGGAGTTCATTCCTAGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGACGGATCG
ACAGCACACAGAGGGGGACCGGGCCAGTCCCCGACTTCCGCATTATACCTCTCCGACCGACTCAG
CACCCGCACGCTCGTTTCATGGGTTGACT
Found at i:19523056 original size:26 final size:26
Alignment explanation
Indices: 19523026--19523078 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19523016 GTTGACTTAG
19523026 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
* *
19523052 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
19523078 G
1 G
19523079 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:19523381 original size:159 final size:154
Alignment explanation
Indices: 19523140--19523551 Score: 404
Period size: 159 Copynumber: 2.6 Consensus size: 154
19523130 ACCAGGCCGA
* * * * * * *
19523140 TCCCTGACTTATGCATTTTGCCTCTCCGATCGGCTGAGCCCTCGTACGCCCGTTTCATGGCTTGG
1 TCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTGAGCCC-CGAACGCTCGTTTCATGGGTTGG
* * * *
19523205 CTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACC-A-AGGGTTGTGGCAGTGA-
65 CTTAGGCATACGGAGTTCATTCCATGTCTAAG----A-TTGAACCAACAGGGTTGCGACAGT-AT
**
19523267 GATCGGTAGCACGTAGAGGGGGACCAGGTC-G
124 GATCAATAGCACGTAG-GGGGGACCAGGTCAG
* * *
19523298 ATCCCC-AGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCTCCCGAACGCTCATTTCGTGGGTT
1 -TCCCCGA-CTTGTGCATTATGCCTCTCCGGTCGGCTGAGC-CCCGAACGCTCGTTTCATGGGTT
* * *
19523362 GACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATTGAACCGAACTGAGGGTTGCGACGGTAT
63 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATTGAACC-AAC--AGGGTTGCGACAGTAT
19523426 GATCAATAGCACGTAGGGGGGACCAGGTCAG
124 GATCAATAGCACGTAGGGGGGACCAGGTCAG
* * * * * * *
19523457 TCCCCGACTTGTGCATTCTACCTCTCTGGCCGGTTGAGCACCTGCACGCTCGTTTCATGGGTTGG
1 TCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTGAGC-CCCGAACGCTCGTTTCATGGGTTGG
19523522 CTTAGGCATACGGAGTTCATTCCATGTCTA
65 CTTAGGCATACGGAGTTCATTCCATGTCTA
19523552 CGCATACGGA
Statistics
Matches: 209, Mismatches: 32, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
154 6 0.03
155 1 0.00
156 1 0.00
157 3 0.01
158 91 0.44
159 102 0.49
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.27
Consensus pattern (154 bp):
TCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTGAGCCCCGAACGCTCGTTTCATGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGATTGAACCAACAGGGTTGCGACAGTATGATCAAT
AGCACGTAGGGGGGACCAGGTCAG
Found at i:19523774 original size:26 final size:26
Alignment explanation
Indices: 19523738--19523788 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19523728 TGACTTAGGT
19523738 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
19523764 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
19523789 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:19524555 original size:26 final size:26
Alignment explanation
Indices: 19524526--19524578 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19524516 GTTAACTTAG
19524526 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
19524552 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19524578 G
1 G
19524579 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19525009 original size:11 final size:11
Alignment explanation
Indices: 19524990--19525022 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
19524980 GCTCGAGCAC
19524990 CATCGTCGGAG
1 CATCGTCGGAG
*
19525001 CATCATCGGAG
1 CATCGTCGGAG
19525012 CATCGTCGGAG
1 CATCGTCGGAG
19525023 AGCCTAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:19526179 original size:26 final size:26
Alignment explanation
Indices: 19526150--19526202 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19526140 GTTGGCTTAG
19526150 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
19526176 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
19526202 G
1 G
19526203 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:19527092 original size:26 final size:26
Alignment explanation
Indices: 19527062--19527114 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19527052 GTTGACTTAG
*
19527062 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
*
19527088 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
19527114 G
1 G
19527115 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:19534952 original size:26 final size:26
Alignment explanation
Indices: 19534901--19534953 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19534891 GTTGACTTAG
**
19534901 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
* *
19534927 GCATACGGGGTTCATTCCCAACCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
19534953 G
1 G
19534954 ATCGAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAACCTAA
Found at i:19535440 original size:26 final size:26
Alignment explanation
Indices: 19535399--19535454 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
19535389 TGGGTTGGCT
19535399 TAAGCATACGATGTTCATT-CCATGTC
1 TAAGCATACGATGTTCATTCCCA-GTC
19535425 TAAGCATACGGA-GTTCATTCCCAGTC
1 TAAGCATAC-GATGTTCATTCCCAGTC
19535451 TAAG
1 TAAG
19535455 ATCGGATCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGATGTTCATTCCCAGTC
Found at i:19536507 original size:26 final size:26
Alignment explanation
Indices: 19536471--19536523 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19536461 GTTGACTTAG
*
19536471 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
19536497 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19536523 G
1 G
19536524 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19536958 original size:158 final size:157
Alignment explanation
Indices: 19536497--19536989 Score: 483
Period size: 158 Copynumber: 3.1 Consensus size: 157
19536487 CCCAGTCTAA
* * * *
19536497 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGA-TCGAGGGTTACGGTAGCAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACT-GAGGGTTGCGGTAGCAGGATCGAC
* * *
19536561 AGCACATAGGGGGGA-CGGGGCCATTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCA
65 AGCACGTAGGGGGGATC-GAGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGC-
* * *
19536625 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 GCCGCACGCTCGTTTCATGGGTTGGCTTAG
* **** * * * * * ** *
19536655 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGAAAC-AAGGGTGGTGGTAGTGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATTGAACT-G-GACTGAGGGTTGCGGTAGCAGGATCG
* * * * * * ** *
19536717 ACAGCACGCAGAGGGGGATCGAGCCAATCCCCGGTTTGCGCATTATCCCTTTCCGGTCGGCTCAG
63 ACAGCACGTAG-GGGGGATCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAG
* * * *
19536782 CGCCCCTACGCTCATTTCATGGGATGACTTAG
127 CGCCGC-ACGCTCGTTTCATGGGTTGGCTTAG
* *
19536814 GCATACGGAGTTCATTCCCAGTCAAAGATTGAACTGGACTGAGGGTTGCGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACTGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
19536879 GTACGTAGGGGGGATCGAGTCGATCCCCGGCTTGCATATTCTGCCTCTCCGACCGGCTGAGCGCT
66 GCACGTAGGGGGGATCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGC-
19536944 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
19536972 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
19536990 ATGTCTATGC
Statistics
Matches: 257, Mismatches: 67, Indels: 22
0.74 0.19 0.06
Matches are distributed among these distances:
157 5 0.02
158 135 0.53
159 111 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACTGAGGGTTGCGGTAGCAGGATCGACA
GCACGTAGGGGGGATCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:19537728 original size:159 final size:157
Alignment explanation
Indices: 19537509--19537890 Score: 376
Period size: 159 Copynumber: 2.4 Consensus size: 157
19537499 CTCTGGTCGG
* * * * * *
19537509 CTGAGCGCCCGCATGCCCA-TTCATGGGTTGGCTTAGGCAAAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGTGCCCGCACGCTCATTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAG-
* * * *** * * * * *
19537573 CCCAG-TCGGACCGAAGGTTGTGGTAGCAGGACCGACAG-CATGCAGAGGGGAACTGGGCCGATC
64 ACCAGACCAGACCGAAGGTTACAGCAGCAAGACCGACAGCCAT-AAGAGGGGAAC-AGCCCGATC
*** *
19537636 CCCGGCTTGCGCATTATGTGTCTCCGGCCGA
127 CCCGGCTTGCGCATTATACCTCTCCGACCGA
* *
19537667 CTTAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCCA-GTCTAAG
1 CTGAGTGCCCGCACGCTCATTTCGTGGGTTG-CTTAGGCATACGGAGTTC-ATTCCATGTCTAAG
* * * * *
19537731 ATCAGACCAGACCGAGGGTTACAGCAGCAAGATCGACAGCCCATAAGGGGGGATCAGCCCGATCC
64 ACCAGACCAGACCGAAGGTTACAGCAGCAAGACCGACAG-CCATAAGAGGGGAACAGCCCGATCC
*
19537796 CCGGCTTGCGCATTCTACCTCTCCGACCGA
128 CCGGCTTGCGCATTATACCTCTCCGACCGA
* * *
19537826 CTGAGTGCCCGTACGCTCGTTTCGTGGGTTTGCTTACGCATACGGAGTTCATTCCATGTCTAAGA
1 CTGAGTGCCCGCACGCTCATTTCGTGGG-TTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
19537891 ATACGGAGTT
Statistics
Matches: 182, Mismatches: 34, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
158 24 0.13
159 139 0.76
160 16 0.09
161 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (157 bp):
CTGAGTGCCCGCACGCTCATTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAC
CAGACCAGACCGAAGGTTACAGCAGCAAGACCGACAGCCATAAGAGGGGAACAGCCCGATCCCCG
GCTTGCGCATTATACCTCTCCGACCGA
Found at i:19537894 original size:26 final size:26
Alignment explanation
Indices: 19537865--19537916 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19537855 TTGCTTACGC
* *
19537865 ATACGGAGTTCATTCCATGTCTAAGA
1 ATACGGAGTTCATTCCAAGTATAAGA
19537891 ATACGGAGTTCATTCCAAGTATAAGA
1 ATACGGAGTTCATTCCAAGTATAAGA
19537917 TCGGACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCAAGTATAAGA
Found at i:19538278 original size:26 final size:26
Alignment explanation
Indices: 19538242--19538294 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19538232 GTTGACTTAG
19538242 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19538268 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19538294 G
1 G
19538295 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19538770 original size:26 final size:26
Alignment explanation
Indices: 19538741--19538796 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
19538731 TGGGTTGGCT
*
19538741 TAAGCATACAGAGTTTATTCC-ATGTC
1 TAAGCATACAGAGTTCATTCCTA-GTC
**
19538767 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCTAGTC
19538793 TAAG
1 TAAG
19538797 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCTAGTC
Found at i:19538782 original size:881 final size:882
Alignment explanation
Indices: 19536421--19538798 Score: 2764
Period size: 881 Copynumber: 2.7 Consensus size: 882
19536411 TACGCATCCT
* * *
19536421 GCCTCTCTGGTCGGCTGAGCGCCC-CTCGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
19536485 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTACGGTA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTA
* * * * * * ** *
19536550 GCAGGATCAACAGCACATAGGGGGGA-CGGGGCCATTCCCCGGCTTGCACATTCTGCCTCTCCGA
131 GCAGGATCGACAGCACGTAGGGGGGACCGGGTCGA-TCCCTGACTTGCGTATTCTGCCTCTCGGA
* *
19536614 CCGGCTAAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
195 -CGGCTGAGCGCCCGCACG-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * * * *
19536679 AAGCCCCAGTCGAAACAAGGGTGGTGGTAGTGGGACCGACAGCACGCAGAGGGGGATCGAGCCAA
258 AAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCATGCAGAGGGGGATCG-GCCGA
* * * * * * *
19536744 TCCCCGGTTTGCGCATTATCCCT-TTCCGGTCGGCTCAGCGCCCCTACGCTCATTTCATGGGATG
322 TCCCCGGCTTGCGCATTATGCCTCTT-CAGTCCGCTCAGAGCCCGTACGCTCATTTCATGGGTTG
* * ** * * *
19536808 ACTTAGGCATACGGAGTTCATTCCCAGTCAAAGAT-TGAACTGGACTGAGGGTTGCGGTAGCAGG
386 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCAGCAGCAGG
* **
19536872 ATTGACAGTACGTAGGGGGGATC-GAGTCGATCCCCGGCTTGCATATTCTGCCTCTCCGACCGGC
450 ATTGACAGCACGTAGGGGGGATCAG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGC
* * *
19536936 TGAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCA
514 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCA
* * *
19537001 TACAGACTTCATTCCTACTATAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGACTGGTAGTA
579 TACGGAGTTCATTCCTAGTATAAGATCAGACCAGACCGAGGGTTGTGGC---A-GAC--G-AGTA
* *
19537066 GGACCAGCAGCAGGATCGACAGCACGTAGGGGGGACCAGGCAGATCCCCGGCTTACGCATTCTAC
637 GGACCAGCAGCAGGATCGACAGCACGCAGCGGGGACCAGGCAGATCCCCGGCTTACGCATTCTAC
* * * *
19537131 CTCTCCGACCGGTTGAGTGCCCGCACACTCATCTCATTGGTTGGCTTAGACATACGGAGTTCATT
702 CTCTCCGACCGGCTGAGCGCCCCCACACTCATCTCATGGGTTGGCTTAGACATACGGAGTTCATT
* * *
19537196 CCATGTCTAAGCCCCAGCCGGACCGAGGGTTCTCACAGCAAGACCGGTAGCGGGATCGGTAGCAC
767 CCATGTCTAAGCCCCAGCCGAACCGAGGGTTCTCACAGCAAGACCGATAGCGGGATCGGCAGCAC
* * * ***
19537261 GCAGAGGGGGATCGAGCTGATCCCCGACTTGCACATTATGCCTCTCGGTTG
832 GCAGAAGGGGACCGAGCTGATCCCCGACTTACACATTATGCCTCTCGACCG
* * *
19537312 GCCTTTCCGATCGGTTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* * **
19537377 T-CCTAGTCTAAGCATACGGAGTTCATTTCTGGTCTAAGATCGAACTGGACCGAGGGTTGCGGTA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTA
* * * *
19537441 ACCGGATCGACAGCACGTAGAGGGGACCGGGTCGATCCCTGACTTGCGTATTCTGCCTCTCTGGT
131 GCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCTGACTTGCGTATTCTGCCTCTC-GGA
* ** * *
19537506 CGGCTGAGCGCCCGCATGCCCATTCATGGGTTGGCTTAGGCAAAGGGAGTTCATTCCATGTCTAA
195 CGGCTGAGCGCCCGCACGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * *
19537571 GCCCCAGTCGGACCGAAGGTTGTGGTAGCAGGACCGACAGCATGCAGAGGGGAACTGGGCCGATC
260 GCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCATGCAGAGGGGGA-TCGGCCGATC
** * * * * * *
19537636 CCCGGCTTGCGCATTATGTGTC-TCCGGCCGACTTAGTGCCCGCACGCTCATTTCGTGGGTTGAC
324 CCCGGCTTGCGCATTATGCCTCTTCAGTCCG-CTCAGAGCCCGTACGCTCATTTCATGGGTTGAC
* * * *
19537700 TTAGGCATACGGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAAGATC
388 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATT
* * ** * *
19537765 GACAGCCCATAAGGGGGGATCAGCCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGA
453 GACAGCACGT-AGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA
* * * * * *
19537830 GTGCCCGTACGCTCGTTTCGTGGGTTTGCTTACGCATACGGAGTTCATTCCATGTCTAAGAATAC
517 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATAC
* * * *
19537895 GGAGTTCATTCCAAGTATAAGATCGGACCAGACCGAGGG-T-T-GC-GAC-AGTATGACCAGTAG
582 GGAGTTCATTCCTAGTATAAGATCAGACCAGACCGAGGGTTGTGGCAGACGAGTAGGACCAGCAG
* * * * * * * *
19537955 CAGGATCGACAGCATGCAGCGGGGATCAGGCCGATCCCTGGCTTAGGCATTCTGCCTCTCTGGCC
647 CAGGATCGACAGCACGCAGCGGGGACCAGGCAGATCCCCGGCTTACGCATTCTACCTCTCCGACC
* * * * *
19538020 GGCTGAGCGCCCCCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAA
712 GGCTGAGCGCCCCCACACTCATCTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAA
* * *** * *
19538085 GCCCCAGCCGAACTGAGGGTTGTGGTAGCAGGACCGATAGCGGGATCGGCAGCACGTAGAAGGGG
777 GCCCCAGCCGAACCGAGGGTTCTCACAGCAAGACCGATAGCGGGATCGGCAGCACGCAGAAGGGG
* * * ** *
19538150 ACCGGGCTGATCCTCGGCTTACGTATTATGCTTCTCGACCG
842 ACCGAGCTGATCCCCGACTTACACATTATGCCTCTCGACCG
* * *
19538191 GCCTCTCCGATCGGCTGGGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
19538256 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGATTGCGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTA
* * * * * * * *
19538321 GTAAGATCGATAGCACGTAGGGGGGACCGAGTCGGTCCCTGATTTTCGTATTTTGCCTCTTCGGA
131 GCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCTGACTTGCGTATTCTGCCTC-TCGGA
* * * **
19538386 CGACTGAGTGCCCTCACGCCTGTTTCGTGCATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
195 CGGCTGAGCGCCCGCACGCC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * * * * *
19538451 AGCCCCAGCCGGACCGAGGGTTGTGGCAACGGGACAGGCAACATGCATAGGGGGATCAGGTCGAT
259 AGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCATGCAGAGGGGGATC-GGCCGAT
* * * * * * * * *
19538516 CCCTGACTTGTGCACTATGCCTCTTCAGTCTGCTCAGAGTCCGTATGCTCGTTTCATGGCTTGAC
323 CCCCGGCTTGCGCATTATGCCTCTTCAGTCCGCTCAGAGCCCGTACGCTCATTTCATGGGTTGAC
* * *
19538581 TTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATT
388 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATT
* * * * *
19538646 GACAGCATGTAGGGGGGGACCAGGTCGATCCCCGACTTGTGCATTCTGCCTCTTCGACCGGCTGA
453 GACAGCACGTA-GGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA
* * * * * *
19538711 GCACCCGCATGCTCATTTCATGGGTTGGCTTAAGCATACAGAGTTTATTCCATGTCTAAGCATAT
517 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATAC
*
19538776 GGAGTTCATTCCTAGTCTAAGAT
582 GGAGTTCATTCCTAGTATAAGAT
19538799 TTTGAGCCGT
Statistics
Matches: 1240, Mismatches: 232, Indels: 40
0.82 0.15 0.03
Matches are distributed among these distances:
879 267 0.22
880 123 0.10
881 317 0.26
882 5 0.00
883 3 0.00
888 2 0.00
889 5 0.00
890 199 0.16
891 272 0.22
892 47 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (882 bp):
GCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTA
GCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCTGACTTGCGTATTCTGCCTCTCGGAC
GGCTGAGCGCCCGCACGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCATGCAGAGGGGGATCGGCCGATCCC
CGGCTTGCGCATTATGCCTCTTCAGTCCGCTCAGAGCCCGTACGCTCATTTCATGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATTGAC
AGCACGTAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
TTCATTCCTAGTATAAGATCAGACCAGACCGAGGGTTGTGGCAGACGAGTAGGACCAGCAGCAGG
ATCGACAGCACGCAGCGGGGACCAGGCAGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCT
GAGCGCCCCCACACTCATCTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCC
CAGCCGAACCGAGGGTTCTCACAGCAAGACCGATAGCGGGATCGGCAGCACGCAGAAGGGGACCG
AGCTGATCCCCGACTTACACATTATGCCTCTCGACCG
Found at i:19540003 original size:26 final size:26
Alignment explanation
Indices: 19539974--19540024 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19539964 TGGCTGAGGT
19539974 ATATGGAGTTCATT-CCATGTCTAAGC
1 ATATGGAGTTCATTCCCA-GTCTAAGC
19540000 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATTCCCAGTCTAAG
19540025 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATATGGAGTTCATTCCCAGTCTAAGC
Found at i:19540388 original size:26 final size:26
Alignment explanation
Indices: 19540352--19540401 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
19540342 GTTGACTTAG
19540352 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
19540378 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
19540402 TAGATTGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19542456 original size:26 final size:26
Alignment explanation
Indices: 19542419--19542471 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19542409 GTTGGCTTAG
* *
19542419 GCATACGGAGTTCCTTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
19542445 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
19542471 G
1 G
19542472 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:19543126 original size:158 final size:158
Alignment explanation
Indices: 19542832--19543327 Score: 468
Period size: 158 Copynumber: 3.1 Consensus size: 158
19542822 AAGTATACGA
* * * * * * **
19542832 AGTTCATTCTCA-GTCTAAG-ATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGC
1 AGTTCATTC-CATGTCTAAGCATCAGACCAGACCGAGGGTTACGGCAGCAGGAACGACAGCACAC
* * * * * *
19542895 AGGGGGGACCGGGCCGATCCTCGGCTTGCGTATTCTGCCTCTCTGGCCAGTTGAGCACCCGCATG
65 AGGGGGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACG
* *
19542960 CCCATTTCGTGGGTTGGCTTAGGCATAGAG
129 CTCGTTTCGTGGGTTGGCTTAGGCATAGAG
** * *
19542990 AGTTCATTCCATGTCTAAGCCAT-AG-CCAGACCGAGGGTTGTGGCAGCGGGAAC-AGCGGCACA
1 AGTTCATTCCATGTCTAAG-CATCAGACCAGACCGAGGGTTACGGCAGCAGGAACGA-CAGCACA
* * * *
19543052 CAGAGGGGGATCGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCAC
64 CAG-GGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCAC
* *
19543117 GCTCGTTTCGTGGGTTGACTTAGGCATACAG
128 GCTCGTTTCGTGGGTTGGCTTAGGCATAGAG
* * * * * * **
19543148 AGTTCATTCC-TAGTCTAAG-ATCGGACCGGATCGAGGGTTACGGTAGTAGGATCGACAGCACGT
1 AGTTCATTCCAT-GTCTAAGCATCAGACCAGACCGAGGGTTACGGCAGCAGGAACGACAGCACAC
* * * ** * * * * *
19543211 AGGGGGGACCGGATCGGTCCCCGACTTATGCATTCTACCTCCCCGATCGGTTGAGCGCTCGCACG
65 AGGGGGGACCGG-CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACG
19543276 CTCGTTTCGTGGGTTGGCTTAGGCATACG-G
129 CTCGTTTCGTGGGTTGGCTTAGGCATA-GAG
19543306 AGTTCATTCCATGTCTAAGCAT
1 AGTTCATTCCATGTCTAAGCAT
19543328 ACGGAGTTCA
Statistics
Matches: 273, Mismatches: 52, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 14 0.05
158 243 0.89
159 12 0.04
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTACGGCAGCAGGAACGACAGCACACA
GGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATAGAG
Found at i:19543334 original size:26 final size:26
Alignment explanation
Indices: 19543298--19543350 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19543288 GTTGGCTTAG
19543298 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19543324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19543350 G
1 G
19543351 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19543714 original size:26 final size:26
Alignment explanation
Indices: 19543678--19543730 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19543668 GTTGACTTAG
19543678 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
19543704 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19543730 G
1 G
19543731 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19544277 original size:880 final size:876
Alignment explanation
Indices: 19542206--19544336 Score: 2437
Period size: 880 Copynumber: 2.4 Consensus size: 876
19542196 ATGCAGAGGG
* * * * *
19542206 TTATGCCTTTCCGATCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
1 TTATGCCTCTCCGGTCGGCTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
19542271 TTCATTCCCAATCTAAGATTGAACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACATAGAG
66 TTCATTCCCAATCTAAGA-TCAACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGTAGGG
* ** * * * ** * * *
19542336 GGCATTGGGTCGGTCTCCGG-CTTGCGTATTCTACCTCTTCGACCGACTGAGCGCCCACATGCTC
130 GGGACCGGATCGGTC-CCGGACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCTCGCAAGCTC
*
19542400 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGTCTAAGCATACGAAGTTCATTCCTA
194 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG-AGTTCATTCCTA
* ***
19542465 GTCTAAGAT-TAGACCAGACTGAGGGTTGTATTAGCAGGACCAGCAGCAGGATCGGTAGCACGTA
258 GTCTAAGATCGA-ACCAGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGTAGCAC-TA
* * ** * *** * * *
19542529 AGAGGGACCGGGTTGAT-CCTCGGCTTGTGCATTCTACCT-TTCCGGTAGGTTGAGCGCCCGTAT
321 AGGGGGACCGGGTCGATCCCT-GGCTTGCACATTCTGCCTCTT-CGACCGATTGAGCGCCCGCAC
* *
19542592 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGA
384 GCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
* * * * * * *
19542657 GGGTTGTGATAGCAGGACCGACAGTGAGATCGACAGCACGTAGTGAGGGACCGAACTGATCCCCG
449 GGGTTATGACAGCAAGACCGACAGCGAGATCGACAGCACGCAGAGAGGGACCGAACTGATCCCCA
* * * * *
19542722 GCTTACGCATTATGCCTCTCCAGTCGACCTCTCTGGCCGGCTGAGCACCGCACGCTCGTTTCTTA
514 GCTTACACATTATGCCTCTCCAGTCGACCTCTCTGACCGACTGAGCACCACACGCTCATTTCTTA
* *
19542787 GGTTGACTTAGGCAAACGAAATTCATCCCCAGTCTAAGTATACGAAGTTCATTCTCAGTCTAAGA
579 GGTTGACTTAGGCAAACGAAATTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * * * *
19542852 TCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCTC
644 TCGAACCGGACCGAAGGTTACGACAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCAATCCTC
* ** * * * *
19542917 GGCTTGCGTATTCTGCCTCTCTGGCCAGTTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTAG
709 GGCTTACCCATTCTGCCTCTCGGGCCAGCTGAGCACCCACATGCCCATTTCATGGGTTGGCTTAG
* * * *
19542982 GCATAGAGAGTTCATTCCATGTCTAAGCCATAGCCAGACCGAGGGTTGTGGCAGCGGGAACAGCG
774 GCATAGAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGACAGCGAGAACAGCA
* *
19543047 GCACACAGAGGGGGATCGGCCGATCCCCGGCTTGCGCA
839 GCACACAGAGGGGGACCGGCCGATCCCCGGCTTACGCA
* *
19543085 TTATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
1 TTATGCCTCTCCGGTCGGCTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * * * * * *
19543150 TTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGTAGGATCGACAGCACGTAGGG
66 TTCATTCCCAATCTAAGATC-AACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGTAGGG
* ** * * *
19543215 GGGACCGGATCGGTCCCCGACTTATGCATTCTACCTCCCCGATCGGTTGAGCGCTCGCACGCTCG
130 GGGACCGGATCGGTCCCGGACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCTCGCAAGCTCG
*
19543280 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
195 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-GAGTTCATTCCTAG
* * * **
19543345 TCTAAGATCGGACCAGA-TCGAGGGTTACGGTAGTAGGACCAGCAGCAGGATCGACAGCACATAA
259 TCTAAGATCGAACCAGACT-GAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGTAGCAC-TAA
19543409 GGGGTGACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTTCGACCGATTGAGC-CCTCGCACG
322 GGGG-GACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTTCGACCGATTGAGCGCC-CGCACG
* * * *
19543473 CTCGTTTCGTGGGTTGGCTTAGGCATGCGAAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAG
385 CTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAG
* * * * * * * *
19543538 GGTTATGGCAGCAAGACCGGCAGCGGGATCGATAGCACGCAGAGGGGGATCGAGCTGATCCTCAG
450 GGTTATGACAGCAAGACCGACAGCGAGATCGACAGCACGCAGAGAGGGACCGAACTGATCCCCAG
* * * * *
19543603 CTTGCACATTATGCCTCTTC-GATCGGCCT-TTTCGACCGACTGACGC-CTACACGCTCATTT-T
515 CTTACACATTATGCCTCTCCAG-TCGACCTCTCT-GACCGACTGA-GCACCACACGCTCATTTCT
* * * * * *
19543664 ATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
577 -TAGGTTGACTTAGGCAAACGAAATTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* *
19543729 AGATCGAACCGGACTGAAGGTTACGATAGCAAGATC-AGCAGCACGCA-GGGGGACCGGGCCAAT
641 AGATCGAACCGGACCGAAGGTTACGACAGCAAGATCGA-CAGCACGCAGGGGGGACCGGGCCAAT
* ** *
19543792 CCTCGGCTTACCCATTCTGCCTGTCGGGCCAGCTGAGTGCCCACATGCCCGTTTCATGGGTTAGG
705 CCTCGGCTTACCCATTCTGCCTCTCGGGCCAGCTGAGCACCCACATGCCCATTTCATGGGTT-GG
* * * *
19543857 CTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCCAGACCGAGGGTTGTGACAGTGAG-A
769 CTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGACAGCGAGAA
* * *
19543921 CCGACAGCACGCAGAGGGGTACCAGGCCGATCCCC-GCTTACGCA
834 CAG-CAGCACACAGAGGGGGACC-GGCCGATCCCCGGCTTACGCA
* ** * *
19543965 TTATGCCTCTTCGG-CTGGCTCAGTGCCCGAACGGTTGTTTCGTCGGGTTGACTTAGGCATACGG
1 TTATGCCTCTCCGGTC-GGCTCAGCACCCGAACGCTCGTTTCGT-GGGTTGACTTAGGCATACGG
* * *
19544029 TGTTCATTCCCAATCT-AGATCATACCAGACCGAGGGTTGCAGTAGCAGGATCGATAGCATGTAG
64 AGTTCATTCCCAATCTAAGATCA-ACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGTAG
* * * * * *
19544093 GGGGGACC-GAGCTGG-CCCGTGACTTGCACATTCTACTTCTCCGACCGGTTGGGCACTCGTAAG
128 GGGGGACCGGATC-GGTCCCG-GACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCTCGCAAG
* *
19544156 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAAACAGAGTTCATTC
191 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-GAGTTCATTC
** * * ** * *
19544221 CTAGTCTAAGATCGAACTGGACTGAGGGTTGCGGCAGCAGGACTAATAGTAGGATCGGTAACACG
255 CTAGTCTAAGATCGAACCAGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGTAGCAC-
* * * **
19544286 CAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTC-TCTGACCGA
319 TAAGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTTC-GACCGA
19544337 CCTCTCCGGT
Statistics
Matches: 1047, Mismatches: 181, Indels: 48
0.82 0.14 0.04
Matches are distributed among these distances:
878 7 0.01
879 392 0.37
880 597 0.57
881 51 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (876 bp):
TTATGCCTCTCCGGTCGGCTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAATCTAAGATCAACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGTAGGGG
GGACCGGATCGGTCCCGGACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCTCGCAAGCTCGT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAGTTCATTCCTAGTC
TAAGATCGAACCAGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGTAGCACTAAGGGG
GACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTTCGACCGATTGAGCGCCCGCACGCTCATT
TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTAT
GACAGCAAGACCGACAGCGAGATCGACAGCACGCAGAGAGGGACCGAACTGATCCCCAGCTTACA
CATTATGCCTCTCCAGTCGACCTCTCTGACCGACTGAGCACCACACGCTCATTTCTTAGGTTGAC
TTAGGCAAACGAAATTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACC
GGACCGAAGGTTACGACAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCAATCCTCGGCTTAC
CCATTCTGCCTCTCGGGCCAGCTGAGCACCCACATGCCCATTTCATGGGTTGGCTTAGGCATAGA
GAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGACAGCGAGAACAGCAGCACACA
GAGGGGGACCGGCCGATCCCCGGCTTACGCA
Found at i:19544419 original size:26 final size:26
Alignment explanation
Indices: 19544389--19544440 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19544379 TGACTTAGGC
19544389 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
* *
19544415 ATACGGAGTTCATTCCCATTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
19544441 TCGGACTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:19544882 original size:26 final size:26
Alignment explanation
Indices: 19544853--19544905 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19544843 GTTGGCTTAG
19544853 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
19544879 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19544905 G
1 G
19544906 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19545370 original size:26 final size:26
Alignment explanation
Indices: 19545332--19545384 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19545322 GTTGGCTTAG
*
19545332 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
19545358 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19545384 G
1 G
19545385 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19546383 original size:26 final size:26
Alignment explanation
Indices: 19546349--19546399 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19546339 TGGCTTAGTT
*
19546349 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
19546375 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19546400 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:19546677 original size:343 final size:341
Alignment explanation
Indices: 19546052--19546716 Score: 843
Period size: 343 Copynumber: 1.9 Consensus size: 341
19546042 TTCATCCCAG
* *
19546052 TCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGTAGGGGGACTGGGCCG
1 TCTAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATCGACAACACG-AGGGGGACTGGGCCG
* * *
19546117 ATCCCCGACTTGCGCATTCTATCTCTCTGACCGGCTGAGCGCCCGCACGCCCGTTTCGTAGGTTG
65 ATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCGTAGGTTG
** * * *
19546182 GCTTAGTTATAGGGAGTTGATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA
130 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAACGGGA
* * * * *
19546247 TCGGCAGCACATAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTTCCTATCCGGTCGACT
195 TCGACAGCACACAGAGGGGGACCGAGCCAATCCCCGGCTTACGCATTATGCCTATCCGGTCGACT
* * * * * **
19546312 GAGCACCCGCATGCTTGTTTCATGGGTTGGCTTAGTTATACGGAGTTCATT-CCATGTCTAAGCA
260 CAGCACCCGCACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCA
19546376 TACAGAGTTCATTCCCAG
324 TACAGAGTTCATTCCCAG
* *
19546394 TCTAAGATCGGACCAGACCGAGGGTTACGACAGCAGGATCGATAGCACACCG-GGGGGA-TCGGG
1 TCTAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATCGACA--ACA-CGAGGGGGACT-GGG
* * * * * * * *
19546457 TCGATCCCCGACTTGTGTATTCTACCTCTCCGACCGGTTGAGTGCCCACACGCCTGTTTTGTGGG
62 CCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCGTAGG
19546522 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAACG
127 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAACG
* * * * * * * *
19546587 GGA-CTGACAGTACGCAGAGGGGGATCGGGTCGATCCCCGGTTTACGCATTATGCCTCTCCGGTC
192 GGATC-GACAGCACACAGAGGGGGACCGAGCCAATCCCCGGCTTACGCATTATGCCTATCCGGTC
* * * *
19546651 GGCTCAGCGCCTGTACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
256 GACTCAGCACCCGCACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19546716 G
321 G
19546717 ATTGGACTGG
Statistics
Matches: 273, Mismatches: 44, Indels: 11
0.83 0.13 0.03
Matches are distributed among these distances:
342 42 0.15
343 223 0.82
344 6 0.02
345 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (341 bp):
TCTAAGATCGGACCAGACCGAGGGTTACGACAGCAAGATCGACAACACGAGGGGGACTGGGCCGA
TCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCGTAGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAACGGGAT
CGACAGCACACAGAGGGGGACCGAGCCAATCCCCGGCTTACGCATTATGCCTATCCGGTCGACTC
AGCACCCGCACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CAGAGTTCATTCCCAG
Found at i:19546847 original size:158 final size:157
Alignment explanation
Indices: 19546373--19547033 Score: 531
Period size: 158 Copynumber: 4.1 Consensus size: 157
19546363 CCATGTCTAA
* * * *
19546373 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
19546438 GCACACCGGGGGGATCGGGTCGATCCCCGACTTGTGTATTCTACCTCTCCGACCGGTTGAGTGCC
66 GCACACAGGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGCTGAG-CCC
** *
19546503 CACACGC-CTGTTTTGTGGGTTGGCTTAG
130 CAGTCGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * * *
19546531 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGAGTTGTGGCAACGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAGCAGGATC-G
* * ** * * * * *
19546593 ACAGTACGCAGAGGGGGATCGGGTCGATCCCCGGTTTACGCATTATGCCTCTCCGGTCGGCTCAG
63 ACAGCACACAG-GGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGCTGAG
* * * * *
19546658 CGCCTGTACGCTCGTTTCATGGATTGACTTAG
127 CCCCAGT-CGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
19546690 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
19546755 GCACACAGGGGGGATCGGGTCGGTCCTCGACTTGCGTATTCTGCCTCTCTGGCCAGCTGAGCACC
66 GCACACAGGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGCTGAGC-CC
*
19546820 CGGTCGCTCGTTTCGTGGGTTGGCTTAG
130 CAGTCGCTCGTTTCGTGGGTTGGCTTAG
* *
19546848 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GG--GT--T-GC-GG--CAG--
* * * * * * * ** * **
19546913 ACAGGATTGGCAACACACAGGGGGGACCAGATCGATCCCTGACTTTTGCATTCTGCCTCTCCCAC
55 -CAGGATCGACAGCACACAGGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGGC
* * *
19546978 CGGCTGAGCACCC-GCACACTCGTTTCATGGGTTGGCTTAG
119 CGGCTGAGC-CCCAG-TCGCTCGTTTCGTGGGTTGGCTTAG
19547018 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
19547034 ACATGTCTAA
Statistics
Matches: 389, Mismatches: 91, Indels: 34
0.76 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 153 0.39
159 116 0.30
160 6 0.02
161 2 0.01
163 1 0.00
164 2 0.01
165 2 0.01
167 3 0.01
169 1 0.00
170 97 0.25
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACACAGGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGCTGAGCCCC
AGTCGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19547198 original size:196 final size:196
Alignment explanation
Indices: 19546859--19547241 Score: 498
Period size: 196 Copynumber: 2.0 Consensus size: 196
19546849 CATACGTAGT
* * ** *
19546859 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGACCAGCAACAGGATTGGC
1 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGACCAGCAACACGATTGGC
* ***
19546924 AACACACAGGGGGGACCAGATCGATCCCTGACTTTTGCATTCTGCCTCTCCCACCGGCTGAGCAC
66 AACACACAGGGGGGACCAGACCGATCCCTGACTTGCACATTCTGCCTCTCCCACCGGCTGAGCAC
19546989 CCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCATACAGAG
131 CCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCATACAGAG
19547054 A
196 A
* * * * *
19547055 TCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGTAGGACCAGTAGCACGATTGGT
1 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGACCAGCAACACGATTGGC
* * * * * * *** * *
19547120 AGCACGCAGGGGGGATCGGGCCGAT-TCTCGACTTGCACATTCTGCCTCTCCGGTCGGTTGAGCG
66 AACACACAGGGGGGACCAGACCGATCCCT-GACTTGCACATTCTGCCTCTCCCACCGGCTGAGCA
* * *
19547184 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGC
19547242 CCTAGTTGGA
Statistics
Matches: 158, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
195 2 0.01
196 156 0.99
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGACCAGCAACACGATTGGC
AACACACAGGGGGGACCAGACCGATCCCTGACTTGCACATTCTGCCTCTCCCACCGGCTGAGCAC
CCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCATACAGAG
A
Found at i:19547414 original size:26 final size:26
Alignment explanation
Indices: 19547384--19547436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19547374 GTTGACTTAG
19547384 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
19547410 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19547436 G
1 G
19547437 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19547435 original size:366 final size:354
Alignment explanation
Indices: 19546690--19547627 Score: 890
Period size: 366 Copynumber: 2.6 Consensus size: 354
19546680 ATTGACTTAG
* * * ** * * * ** * *
19546690 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACAGAGATCATTCCTAGTCTAAGATCAGACAGAACCGAGGGTTGCAACAGTAGGATTGATA
* * * * * *
19546755 GCACACAGGGGGGATCGGGTCGGTCCTCGACTTGCGTATTCTGCCTCTCTGGCCAGCTGAGCACC
66 GCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGTATTCTGCCTCTCCGGACAGCTGAGCGCC
* * ** *
19546820 CGGT-CGCTCGTTTCGTGGGTTGGCTTAGGCATACGTAGTTCATTCCCA-GTCTAAGATC-GGAC
131 C-GTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-C
* * * *
19546882 CGGACCGAGGGTTGTGGTAGCAGGACCAGCAACAGGATTGGCAACACACAGGGGGGACCAGATCG
193 CGGACCGAGGGTTGTGGCAGCAGGACCAGCAACAGGATCGGCAACACACAGAGGGGACCAGATCA
* ** *
19546947 ATCCCTGACTTTTGCATTCTGCCTCTCCCACCGGCTGAGCACCCGCACACTCGTTTCATGGGTTG
258 ATCCCCGACTTACGCATTATGCCTCTCCCACCGGCTGAGCACCCGCACACTCGTTTCATGGGTTG
* *
19547012 GCTTAGGCATACGGAGTTCATTACATGTCTAA
323 ACTTAGGCATACGGAGTTCATCACATGTCTAA
19547044 GCATACAGAGATCATTCCTAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGTAGTAGGACCAGT
1 GCATACAGAGATCATTCCTAGTCTAAGATCAGA-CAGAACCGAGGGTTGC------A--A-CAGT
* * **
19547108 AGCACGATTGGTAGCACGCAGGGGGGATCGGGCCGATTCTCGACTTGCACATTCTGCCTCTCCGG
56 AG---GATTGATAGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGTATTCTGCCTCTCCGG
* * *
19547173 TCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
118 ACAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
** * * ** *
19547238 AAGCCCTAGTTGGACCAAGGGTTGTGGCAGCAGGACC-GACAGA-GGGATCGGCTGCACGCAGAG
183 AAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACCAG-CA-ACAGGATCGGCAACACACAGAG
* ** * ** ** * * * *
19547301 GGGTCC-GGGCTAATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTGAGTGCCTGTACGCTT
246 GGGACCAGATC-AATCCCCGACTTACGCATTATGCCTCTCCCACCGGCTGAGCACCCGCACACTC
*
19547365 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
310 GTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CACATGTCTAA
* * * *
19547410 GCATACGGAGTTCATTTCC-AGTCTAAGATCAGACTGAACTGAGGGTTGCAACAGTAGGATTGAT
1 GCATACAGAGATCA-TTCCTAGTCTAAGATCAGACAGAACCGAGGGTTGCAACAGTAGGATTGAT
* * * * * * *
19547474 AGCACGCAGGGGGGATCGGGCTGATCCTCGGCTTGTGTATTCTACCT-TTCTGACAAGCTGAGTG
65 AGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGTATTCTGCCTCTCCGGAC-AGCTGAGCG
* * * *
19547538 CCCGTACGCCCGTTTCACGGGTTGGCTT-GGCCATAGGGTGTTCATTCCATGTCTAAGCCCTAGC
129 CCCGTACGCTCGTTTCATGGGTTGGCTTAGG-CATACGGAGTTCATTCCATGTCTAAGCCCTAGC
* * *
19547602 CAGATCGAGGGTTGTGGCAGTAGGAC
193 CGGACCGAGGGTTGTGGCAGCAGGAC
19547628 TGGCAGCACG
Statistics
Matches: 474, Mismatches: 86, Indels: 48
0.78 0.14 0.08
Matches are distributed among these distances:
353 6 0.01
354 168 0.35
355 2 0.00
357 6 0.01
358 1 0.00
360 1 0.00
363 6 0.01
365 10 0.02
366 266 0.56
367 8 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (354 bp):
GCATACAGAGATCATTCCTAGTCTAAGATCAGACAGAACCGAGGGTTGCAACAGTAGGATTGATA
GCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGTATTCTGCCTCTCCGGACAGCTGAGCGCC
CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGG
ACCGAGGGTTGTGGCAGCAGGACCAGCAACAGGATCGGCAACACACAGAGGGGACCAGATCAATC
CCCGACTTACGCATTATGCCTCTCCCACCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACT
TAGGCATACGGAGTTCATCACATGTCTAA
Found at i:19547976 original size:159 final size:159
Alignment explanation
Indices: 19547653--19548071 Score: 464
Period size: 159 Copynumber: 2.6 Consensus size: 159
19547643 GGGGATTAGG
* * * * * * *
19547653 CCGATCCTCGACTTACGCATTATGCCTCCCCGGTCGGCTCAGCGCCTGCATGCTCGTTTCTTGGG
1 CCGATCCCCAACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGG
* * * * * *
19547718 TTGACTTAGGCATACAGAGTTCATT-CCTGATCTAGGATCGGATCAGACCGAGGGTTGCAGTAGT
66 TTGGCTTAGGCATACGGAGTTCATTCCCT-ATCTAAGATCGGATCAGACCGAGGGTTACAGCAGC
* *
19547782 AGGATCGATAGCACACAGGGAGGGATCGAA
130 AGGATCGACAGCACACAGGGAGGGACCGAA
* * *
19547812 CCGATCCCTAACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACATGCTCGTTTCGTGGG
1 CCGATCCCCAACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGG
* * * **
19547877 TTGGCTTAGGCATACGGAGTTAATTCCCTATCTAAGATTGGATCGGACCGAGGGTTATGGCAGCA
66 TTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAGATCGGATCAGACCGAGGGTTACAGCAGCA
* **
19547942 GGATTGACAGCACACAGGG-GTGGACCTTA
131 GGATCGACAGCACACAGGGAG-GGACCGAA
* * ** * * * * * *
19547971 TCGATCCCCAGCTTGTGAATTCTGCCTCTCCGGTCAGTTGAGCGCCCGCACGCTTGTTTTGTGGG
1 CCGATCCCCAACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGG
* *
19548036 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 TTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAG
19548072 CATACAGCGT
Statistics
Matches: 216, Mismatches: 42, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
158 1 0.00
159 212 0.98
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (159 bp):
CCGATCCCCAACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAGATCGGATCAGACCGAGGGTTACAGCAGCA
GGATCGACAGCACACAGGGAGGGACCGAA
Found at i:19548083 original size:26 final size:26
Alignment explanation
Indices: 19548045--19548097 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19548035 GTTGGCTTAG
*
19548045 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19548071 GCATACAGCGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19548097 G
1 G
19548098 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19548462 original size:26 final size:26
Alignment explanation
Indices: 19548426--19548477 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19548416 TTGACTTAGA
19548426 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
19548452 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
19548478 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:19549732 original size:26 final size:26
Alignment explanation
Indices: 19549695--19549747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19549685 GTTGACTTAG
*
19549695 GCATACGAAGTTGATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
19549721 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19549747 G
1 G
19549748 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19550037 original size:159 final size:159
Alignment explanation
Indices: 19549866--19550257 Score: 380
Period size: 159 Copynumber: 2.5 Consensus size: 159
19549856 CCCTGTTTCA
* * * * * *
19549866 TGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGACTAAGCCTCAG-CCGAA-TCGACGGTTGT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GACTAAG-ATCAGACCAAACT-AACGGTTGC
* *
19549928 GGTAGCGGGACCGACAGCACGCAGAGGGGGATCGGG-CTGATCCCCGACTTGCACATTATGCCTC
63 GGTAGCAGGACCGACAGCACACAGAGGGGGATCGGGTC-GATCCCCGACTTGCACATTATGCCTC
19549992 TCTGGTCGATTCAGCACCTGCACGCTAATTTTG
127 TCTGGTCGATTCAGCACCTGCACGCTAATTTTG
* * * * *
19550025 TGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCGGATCAAACTAAGGGTTGCGGT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAAACTAACGGTTGCGGT
* * * * *
19550090 AGCAGGATCGACAGCACACATAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTG
66 AGCAGGACCGACAGCACACAGAGGGGGATCGGGTCGATCCCCGACTTGCACATTATGCCTCTCTG
* * * * ** **
19550155 G-CCAGCTGAGCACCCGCACGCTCGTTTCA
131 GTCGA-TTCAGCACCTGCACGCTAATTTTG
* * * * * * * * * *
19550184 TGGGTTGGCGTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCAGT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAAACTAACGGTTGCGGT
19550249 AGCAGGACC
66 AGCAGGACC
19550258 AGCAATAGGA
Statistics
Matches: 194, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
158 5 0.03
159 184 0.95
160 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAAACTAACGGTTGCGGT
AGCAGGACCGACAGCACACAGAGGGGGATCGGGTCGATCCCCGACTTGCACATTATGCCTCTCTG
GTCGATTCAGCACCTGCACGCTAATTTTG
Found at i:19550415 original size:171 final size:170
Alignment explanation
Indices: 19550093--19550566 Score: 535
Period size: 171 Copynumber: 2.8 Consensus size: 170
19550083 TTGCGGTAGC
* * * * * *
19550093 AGGATCGACAGCACACATAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCC
1 AGGATCGACAGCACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGCC
* * * * * * *
19550158 AGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCGTAGGCATACGTAGTTCATTCCCAGTCTAA
66 GGCTGAGCGCCCGCTCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAA
** * *
19550223 GATCGGATCAGACCAAGGGTTGCAGTAGCAGGACC-AGCAAT
130 GCCCAGATCAGACCAAGGGTTGCAGCAGCAGGACCGA-CAAT
* *
19550264 AGGATC-AGCAGCACGTAG-GAGGGGACCGAGCCAGTCCCCGGCTTGCGCATTCTGCCTCTCTGG
1 AGGATCGA-CAGCACGCAGAG-GGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGG
19550327 CCGGCTGAGCGCCCGCTCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
64 CCGGCTGAGCGCCCGCTCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCT
* * * ** *
19550392 AAGCCCTAGCT-GGACCGAGGGTTGTGGCAGCAGGACCGACAGT
128 AAGCCC-AGATCAGACCAAGGGTTGCAGCAGCAGGACCGACAAT
* * * * * * *
19550435 GGGATCGACAGCACGCAGAGGGGGACCGGGCTAATCCTCGGCTTGCGCATTATGCCTTTCTGGCT
1 AGGATCGACAGCACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGCC
* *
19550500 GGCTGAACGCCCG-TACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTA
66 GGCTGAGCGCCCGCT-CGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTA
19550564 AGC
129 AGC
19550567 TACAGAGTTC
Statistics
Matches: 258, Mismatches: 36, Indels: 18
0.83 0.12 0.06
Matches are distributed among these distances:
170 6 0.02
171 243 0.94
172 9 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (170 bp):
AGGATCGACAGCACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGCC
GGCTGAGCGCCCGCTCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAG
CCCAGATCAGACCAAGGGTTGCAGCAGCAGGACCGACAAT
Found at i:19551088 original size:26 final size:26
Alignment explanation
Indices: 19551038--19551090 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19551028 GTTGGCTTAG
*
19551038 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
19551064 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
19551090 G
1 G
19551091 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:19551247 original size:26 final size:26
Alignment explanation
Indices: 19551211--19551263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19551201 GTTGGCTTAG
19551211 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19551237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19551263 G
1 G
19551264 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19551264 original size:173 final size:173
Alignment explanation
Indices: 19550972--19551283 Score: 480
Period size: 173 Copynumber: 1.8 Consensus size: 173
19550962 GGTCGATCCT
* * * *
19550972 CGACTTACGCATTTTGGCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGAGTTGGCTTA
1 CGACTTACGAATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGAGTTGGCTTA
**
19551037 GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATTGGA
66 GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGA
19551102 CCGAGGGTTACGACAGCACGCAGGGGTGGACCTGGCCGGTCTC
131 CCGAGGGTTACGACAGCACGCAGGGGTGGACCTGGCCGGTCTC
* * * * ** *
19551145 CGACTTACGAATTCTGCCTCTCCTACCGGTTGAGCGCTCGCACGCTTGTTTTGTGGGTTGGCTTA
1 CGACTTACGAATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGAGTTGGCTTA
* *
19551210 GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGA
66 GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGA
*
19551275 CCTAGGGTT
131 CCGAGGGTT
19551284 GCGGTAGTAG
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
173 123 1.00
ACGTcount: A:0.20, C:0.26, G:0.27, T:0.27
Consensus pattern (173 bp):
CGACTTACGAATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGAGTTGGCTTA
GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGA
CCGAGGGTTACGACAGCACGCAGGGGTGGACCTGGCCGGTCTC
Found at i:19552125 original size:26 final size:26
Alignment explanation
Indices: 19552096--19552151 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
19552086 TGGGTTGACT
*
19552096 TAAGCATACTGAGTTCA-TCCCTAGTC
1 TAAGCATACGGAGTTCATTCCC-AGTC
*
19552122 TAAGCATACGGAGTTGATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19552148 TAAG
1 TAAG
19552152 ATCAAACCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19552894 original size:26 final size:26
Alignment explanation
Indices: 19552857--19552909 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19552847 GTTGACTTAG
*
19552857 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
19552883 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
19552909 G
1 G
19552910 ATCGGGCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19553185 original size:159 final size:158
Alignment explanation
Indices: 19552883--19553556 Score: 496
Period size: 159 Copynumber: 4.2 Consensus size: 158
19552873 CCCAGTCTAA
* * * * * * * * * * *
19552883 GCATACGAAGTTCATTCCCAGTCTAAGATCGGGCCAGACTGAGGGTTGCGACAACAGGATCGACA
1 GCATACGGAGTTCATTACCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAAGACCGACA
** * * * * * * *
19552948 GCATGCTGG-GGGGATCGGGTTGATCCCCGGCCTGCGGATTCTACCTCTCTGATCGGTTGAGTGG
66 GCACACAGGAGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAG-CG
* *
19553012 CCGCATGCCCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * *
19553041 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGCGAGACCGA
1 GCATACGGAGTTCATTACCA-GTCTAAG-ACCAGACCGGACCGAGGGTTGCGGCAGCAAGACCGA
* * * *
19553104 CAGCACGCA-GAGAGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAG
64 CAGCACACAGGAG-GGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAG
* * *
19553168 CGCTTGCACGCTCATTTCGTGGGTTGACTTAG
128 CGC-CGCACGCTCATTTCATGGGTTGGCTTAG
* * * ** * * *
19553200 GCAAATGGAATTCATTACCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTACCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAAGACCGACA
* * * ** *
19553265 GCACATAGGAGGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGC
66 GCACACAGGAGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCG-
*
19553330 CCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCATTTCATGGGTTGGCTTAG
** * * * * * * *
19553359 GCATACGTTGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGTAGTAGGACCAGCA
1 GCATACGGAGTTCATTACCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAAGACC-G-A
* * * *
19553424 GCAGGATCGGTAGCACGCAGGAGAGGATCGGGCCGATCCCCGGCTTACGCATTCTTCCTCTCTG-
64 -CA-G--C---A-CA--CAGGAGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGA
* * * * *
19553488 GCTGGCTGAGCATCCACACGTTCGTTTCATGGGTTGGCTTAG
119 TC-GGCTGAGC-GCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
19553530 TCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTACCA-GTCTAAG
19553557 GATACGGAGT
Statistics
Matches: 410, Mismatches: 82, Indels: 35
0.78 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 54 0.13
159 236 0.58
160 8 0.02
161 1 0.00
162 2 0.00
163 1 0.00
165 1 0.00
168 1 0.00
169 2 0.00
170 4 0.01
171 96 0.23
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTACCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAAGACCGACA
GCACACAGGAGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:19553562 original size:26 final size:26
Alignment explanation
Indices: 19553532--19553582 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19553522 TGGCTTAGTC
19553532 ATACGAAGTTCATT-CCATGTCTAAGG
1 ATACGAAGTTCATTCCCA-GTCTAAGG
*
19553558 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19553583 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:19553737 original size:196 final size:197
Alignment explanation
Indices: 19553368--19553752 Score: 540
Period size: 196 Copynumber: 2.0 Consensus size: 197
19553358 GGCATACGTT
* * *
19553368 GTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGTAGTAGGACCAGCAGCAGGATCG
1 GTTCATTCCCAGTCTAAGATCAGACAGAACCAAGGGTTGCCGTAGCAGGACCAGCAGCAGGATCG
* * * * * *
19553433 GTAGCACGCAGGAGAGGATCGGGCCGATCCCCGGCTTACGCATTCTTCCTCTCTGGCTGGCTGAG
66 GTAGCACGCAGGAGAGGATCGAGCCAATCCCCGACTTACGCATTCTGCCTCTCTGACTAGCTGAG
* *
19553498 CATCCACACGTTCGTTTCATGGGTTGGCTTAGTCATACGAAGTTCATTCCATGTCTAAGGATACG
131 CACCCACACGTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGGATACG
19553563 GA
196 GA
** *
19553565 GTTCATTCCCAGTCTAAGATCAGATCAG-ACTGAGGGTTGCCGTAGCAGGACCAGTAGCAGGATC
1 GTTCATTCCCAGTCTAAGATCAGA-CAGAACCAAGGGTTGCCGTAGCAGGACCAGCAGCAGGATC
* * * * * * *
19553629 GGTAGCATGCAGG-GGGGATTGAGCCAATCCCTGACTTGCGCATTCTGCCTCTCTGATTAGTTGA
65 GGTAGCACGCAGGAGAGGATCGAGCCAATCCCCGACTTACGCATTCTGCCTCTCTGACTAGCTGA
**
19553693 GTGCCCACACGTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
130 GCACCCACACGTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
19553753 CCCTAGCCGG
Statistics
Matches: 164, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
196 95 0.58
197 67 0.41
198 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (197 bp):
GTTCATTCCCAGTCTAAGATCAGACAGAACCAAGGGTTGCCGTAGCAGGACCAGCAGCAGGATCG
GTAGCACGCAGGAGAGGATCGAGCCAATCCCCGACTTACGCATTCTGCCTCTCTGACTAGCTGAG
CACCCACACGTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGGATACG
GA
Found at i:19553926 original size:26 final size:26
Alignment explanation
Indices: 19553897--19553949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19553887 GTTGACTTAG
*
19553897 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19553923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19553949 G
1 G
19553950 AGCAGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19554270 original size:26 final size:26
Alignment explanation
Indices: 19554241--19554292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19554231 TTGACTTATA
*
19554241 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
19554267 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
19554293 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:19554657 original size:26 final size:26
Alignment explanation
Indices: 19554621--19554670 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19554611 GTTGACTTAG
*
19554621 GCATACGGAGTTCATCCCCAGTCTGA
1 GCATACGGAGTTAATCCCCAGTCTGA
*
19554647 GCATACGGAGTTAATTCCCAGTCT
1 GCATACGGAGTTAATCCCCAGTCT
19554671 AAGATCAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTGA
Found at i:19554856 original size:724 final size:710
Alignment explanation
Indices: 19553511--19554896 Score: 1575
Period size: 724 Copynumber: 1.9 Consensus size: 710
19553501 CCACACGTTC
* * *
19553511 GTTTCATGGGTTGGCTTAGTCATACGAAGTTCATTCCATGTCTAAGGATACGGAGTTCATTCCCA
1 GTTTCATGGGTTGACTTAGTCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCA
** * * ** **
19553576 GTCTAAGATCAGATCAGACTGAGGGTTGCCGTAGCAGGACCAGTAGCAGGATCGGTAGCATGCAG
66 GTCTAAGATCAGATCAGACCAAGGGTTACCGCAGCAGGACCAACAGCAGGATCGACAGCATGCAG
* * * * * **
19553641 GGGGGATTGAGCCAATCCCTGACTTGCGCATTCTGCCTCTCTGATTAGTTGAGTGCCCACACGTT
131 GGGGGACTGAGCCAATCCCTGACTTGCGCATTCTACCTCTCCGACTAGCTGAGCACCCACACGTT
* * *
19553706 CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGG
196 CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAAGG
* ** * *
19553771 TTGTGGTAGCAGGACCGACAGTGGGATCGATAGCACGCAGAGAGGGACCGGGCTAATCCCCGGCT
261 TAGTGGTAGCAGGACCGACAGCAGGATCGACAGCACGCAGAGAGGGACCGGGCTAATCCCCGACT
* * *
19553836 TGCACATTATGTCTCTCCGGTCGGCTGGGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCAT
326 TGCACATTATGTCTCTCCGCTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* * *
19553901 ACGGAGTTTATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGCAGATCAAATCGAG
391 ACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGAGCAGATCAAACCGAG
* * * * ** * *
19553966 TGTTGCGGCAGTAGGATCAGAAGTATGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTG
456 GGTTACGACAGTAGGATCAGAAGCACACAGGAGGGATCGGGCTGATCCCCGGCTTGCACATTCTG
* * * * * * **
19554031 CCTTTTCGGCCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGTTTAGGCATAGGGTGTTCAT
521 CCTTCTCGGCCAACTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCAT
* * * * * * *
19554096 TACATGTCTAAGCCCTAGCCAGATCAAGCATTGTGGCAGTGGGACTGGCAGCATGCAGAGAGGGA
586 TACATGTCTAAGCCCCAACCAGACCAAGCATTGTGGCAGTGAGACCGACAGCACGCAGAGAGGGA
*
19554161 TCGGGCCGATCCTCATCTTATGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGTACGCTT
651 TCGAGCCGATCCTCATCTTATGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGTACGCTT
* *
19554221 GTTTCGTGGGTTGACTTA-TACATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCC
1 GTTTCATGGGTTGACTTAGT-CATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCC
** * * * * *
19554285 AGTCTAAGATTGGATCGGACCAAGGGTTACGGCAGTAGGATCAACAGTAGGA-CTGACAGCATGC
65 AGTCTAAGATCAGATCAGACCAAGGGTTACCGCAGCAGGACCAACAGCAGGATC-GACAGCATGC
* * * * * * *
19554349 AGGGGGAGACTGGGTCAAT-CCTCGGCTTGTGCATTCTACCTCTCCGCCTGGCTGAGCACCCGCA
129 AGGGGG-GACTGAGCCAATCCCT-GACTTGCGCATTCTACCTCTCCGACTAGCTGAGCACCCACA
** *
19554413 CGCTT-GTTTTGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCCCCAGTCGAAC
192 CG-TTCGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCCCCAGCCGAAC
* * * * * *
19554476 TGAAGGTAGTGGTAGCAGGATCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCGGGCTGATCC
255 CGAAGGTAGTGGTAGCAGGACCGACAGCAGGATCGACAGCACGCAGAGAGGGACCGGGCTAATCC
* ** *
19554541 TCGACTTGTGCATTATGCCTCTCAGATCAACCTCTCCAGCTGGCTGAGCGA-CCGCACGCTCGTT
320 CCGACTTGCACATTATG--TCTC---T---CCGCT----C-GGCTGAGC-ACCCGCACGCTCGTT
* *
19554605 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTGAGCATACGGAGTTAATTCCCAGTC
371 TCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTAATTCCCAGTC
* ** * * *
19554670 TAAGATCAGATCGGACCGAGGGTTACGATAGTAGGATC-GTCAGCACACAGGAGGGATTGGGCTG
436 TAAGAGCAGATCAAACCGAGGGTTACGACAGTAGGATCAG-AAGCACACAGGAGGGATCGGGCTG
* *
19554734 ATCCCTGGCTTGCACATTCTGCC-TCTCTGGGCAAC-GAAGCACCCACACGCCCATTTCATGGGT
500 ATCCCCGGCTTGCACATTCTGCCTTCTC-GGCCAACTG-AGCACCCACACGCCCATTTCATGGGT
* * * * **
19554797 TGGCTTAGGCATAGGAAGTTCATTCCATGTCTCAGCCCCAACCGGACCGAGGGTTGTGGCAGTGA
563 TGGCTTAGGCATAGGAAGTTCATTACATGTCTAAGCCCCAACCAGACCAAGCATTGTGGCAGTGA
* *
19554862 GACCGACAGCACGCAGAGGGGGATCGAGCTGATCC
628 GACCGACAGCACGCAGAGAGGGATCGAGCCGATCC
19554897 CTGACTTGCG
Statistics
Matches: 550, Mismatches: 103, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
709 2 0.00
710 114 0.21
711 159 0.29
712 2 0.00
713 4 0.01
716 1 0.00
719 3 0.01
723 6 0.01
724 258 0.47
725 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (710 bp):
GTTTCATGGGTTGACTTAGTCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCA
GTCTAAGATCAGATCAGACCAAGGGTTACCGCAGCAGGACCAACAGCAGGATCGACAGCATGCAG
GGGGGACTGAGCCAATCCCTGACTTGCGCATTCTACCTCTCCGACTAGCTGAGCACCCACACGTT
CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAAGG
TAGTGGTAGCAGGACCGACAGCAGGATCGACAGCACGCAGAGAGGGACCGGGCTAATCCCCGACT
TGCACATTATGTCTCTCCGCTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGAGCAGATCAAACCGAG
GGTTACGACAGTAGGATCAGAAGCACACAGGAGGGATCGGGCTGATCCCCGGCTTGCACATTCTG
CCTTCTCGGCCAACTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCAT
TACATGTCTAAGCCCCAACCAGACCAAGCATTGTGGCAGTGAGACCGACAGCACGCAGAGAGGGA
TCGAGCCGATCCTCATCTTATGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGTACGCTT
Found at i:19555024 original size:159 final size:157
Alignment explanation
Indices: 19554647--19555024 Score: 348
Period size: 159 Copynumber: 2.4 Consensus size: 157
19554637 CCCAGTCTGA
* * * * * *
19554647 GCATACGGAGTTAATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGATAGTAGGATCGTCA
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAAGACCGACA
* * * * * ** *
19554712 GCACACAGGAGGGATTGGGCTGATCCCTGGCTTGCACATTCTGCCTCTCTGGGCAACGAAGCACC
65 GCACACAGGAGGGATCGAGCTGATCCCTGACTTGCACAATATGCCTCTCCAGCCAACGAAGCACC
* *
19554777 CACACGCCCATTTCATGGGTTGGCTTAG
130 CAAACGCCCATTTCATGGGTTAGCTTAG
* * ** * * * *
19554805 GCATA-GGAAGTTCATTCCATGTCTCAGCCCCA-ACCGGACCGAGGGTTGTGGCAGTGAGACCGA
1 GCATACGG-AGTTCATCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGACAGTAAGACCGA
* * ** * **
19554868 CAGCACGCAGAGGGGGATCGAGCTGATCCCTGACTTGCGTAATATGCCTCTCCAGCCAGCTCAGC
63 CAGCACACAG-GAGGGATCGAGCTGATCCCTGACTTGCACAATATGCCTCTCCAGCCAACGAAGC
* * *
19554933 ACCTAAACGCTCATTTCGTGGGTTAAG-TTAG
127 ACCCAAACGCCCATTTCATGGGTT-AGCTTAG
* *
19554964 GCATACGGAGTTCACTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAACAGTAAGACC
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAAGACC
19555025 AGCAGTAGGA
Statistics
Matches: 168, Mismatches: 44, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
157 6 0.04
158 48 0.29
159 107 0.64
160 7 0.04
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAAGACCGACAG
CACACAGGAGGGATCGAGCTGATCCCTGACTTGCACAATATGCCTCTCCAGCCAACGAAGCACCC
AAACGCCCATTTCATGGGTTAGCTTAG
Found at i:19555692 original size:170 final size:168
Alignment explanation
Indices: 19555393--19555832 Score: 397
Period size: 170 Copynumber: 2.6 Consensus size: 168
19555383 GATCGGGCCG
* * * *
19555393 ATCCCC-AGCTTGCGCATTCTACCTC-TCTGGCCAGCTGAGCACCTGCATGCTCATTTCATGGGT
1 ATCCCCGA-CTTGCGCATTCTACCTCTTC-GGCGA-CTGAGCGCCTGCACGCTCGTTTCATGGGT
* * * * ** * *
19555456 TGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAG-ATCAGACTGGATTGAGAGTTGCGGTAGCA
63 TAGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCGGACCGAGAGTTACGGCAGCA
* ** * **
19555520 GGACCAGCAGTAGGATTGGTAGCAC-AAAGGAGGGACCGGGTCA
127 GGACCAGCAGCAGGATCAGCAGCACGAAAGG-GGGACCGACT-A
* *
19555563 ATCCCCGACTTGCACATTCTACCTCTTCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTA
1 ATCCCCGACTTGCGCATTCTACCTCTTCGG-CGACTGAGCGCCTGCACGCTCGTTTCATGGGTTA
* * * *
19555628 GCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTATGGCAGCAGG
65 GCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCGGACCGAGAGTTACGGCAGCAGG
* * * *
19555692 ACCGGCAGCGGGATCAGCAGCACGTAGAGGGGGACCGACTG
129 ACCAGCAGCAGGATCAGCAGCACG-AAAGGGGGACCGACTA
* * * * * * *
19555733 ATCCTCGACTTGTGCATTATGCTTTTTCGGCCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTT
1 ATCCCCGACTTGCGCATTCTACCTCTTCGG-CGACTGAGCGCCTGCACGCTCGTTTCATGGG-TT
* *
19555798 A-CTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
64 AGCTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCA
19555833 TACGGAGTTC
Statistics
Matches: 219, Mismatches: 42, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
169 3 0.01
170 191 0.87
171 21 0.10
172 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (168 bp):
ATCCCCGACTTGCGCATTCTACCTCTTCGGCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTAG
CTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGACCGGACCGAGAGTTACGGCAGCAGGAC
CAGCAGCAGGATCAGCAGCACGAAAGGGGGACCGACTA
Found at i:19555834 original size:26 final size:26
Alignment explanation
Indices: 19555804--19555856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19555794 GTTTACTTAG
*
19555804 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19555830 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19555856 G
1 G
19555857 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19556505 original size:159 final size:164
Alignment explanation
Indices: 19556337--19556701 Score: 427
Period size: 170 Copynumber: 2.2 Consensus size: 164
19556327 TGGACACTCA
* * *
19556337 TTTCATGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTT
* * * *
19556402 GCGGTAGCAGGATC-GACAGCATGA-AG-G-A-A-GAGATCGGGTCAATCCCCGGCTTGCACATT
66 ACGGTAGCAGGACCAG-CAGCAAGACAGAGCACAGGAGATCGGGTCAATCCCCGGCTTACACATT
*
19556461 CTGCCTCTCCGACCGACTGAGCGCCCGCATGCTCG
130 CTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCG
* * ** ** *
19556496 TTTCGTGGGTTGGCTTAGGCATACGGCGTTCATTCCCAATCTAAGATTGGACTGGATTGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTT
* * *
19556561 ACGGTAGTAGGACCAGCAGCAAGATCAGCAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTAC
66 ACGGTAGCAGGACCAGCAGCAAGA-CAG-AGCAC--A--GGAGATCGGGTCAATCCCCGGCTTAC
* * *
19556626 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCG
125 ACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCG
*
19556666 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
19556702 ATGTCTAGGC
Statistics
Matches: 170, Mismatches: 24, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
159 73 0.43
160 1 0.01
161 2 0.01
163 1 0.01
164 1 0.01
167 1 0.01
170 91 0.54
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (164 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTT
ACGGTAGCAGGACCAGCAGCAAGACAGAGCACAGGAGATCGGGTCAATCCCCGGCTTACACATTC
TGCCTCTCCGACCGACTGAGCGCCCGCACGCTCG
Found at i:19556850 original size:26 final size:26
Alignment explanation
Indices: 19556814--19556892 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
19556804 GTTGACTTAG
19556814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19556840 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19556866 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19556892 G
1 G
19556893 ATCGAACGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19558135 original size:158 final size:158
Alignment explanation
Indices: 19557759--19558149 Score: 396
Period size: 158 Copynumber: 2.5 Consensus size: 158
19557749 GTCTAAGCAA
* * * *
19557759 ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGACAGCAGGATCGATAGCAC
1 ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCAC
* * * * **
19557824 GCAGGGGGGACCGGACCGGTCCCCGACTTGTGAATTTTGCCTCTCCGATCGGTTAAGTGCCTGTA
66 GCAGGGGGGACCGGACCGATCCCCGACTTGCGAATTATGCCTCTCCGATCGGCTAAGTGCCCATA
* *
19557889 CGCCTGTTTCATGGGTTGGCTTAGGCAT
131 CGCCTATTTCATGGGTTGACTTAGGCAT
* ** * * * * *
19557917 AGGGAGTTCATT-CCATGTCTAAGA-CCTAGCTGGAGCTAGGGTTATGGCAGCGGGACCGACA-C
1 ATGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTATGGCAGCAGGATCGACAGC
* ** * * *
19557979 ACGCAGAGGGGGACCAGG-CTGATCCCTTACTTGCGCATTATGCCTCTCCGATTGGCTCAGTGCC
64 ACGCAG-GGGGGACC-GGACCGATCCCCGACTTGCGAATTATGCCTCTCCGATCGGCTAAGTGCC
*
19558043 CATACG-CTCATTTCGTGGGTTGACTTAGGCAT
127 CATACGCCT-ATTTCATGGGTTGACTTAGGCAT
* * * * * *
19558075 ATGGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGTGGTAGTAGGATCGACAGTAC
1 ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCAC
*
19558140 ACAGGGGGGA
66 GCAGGGGGGA
19558150 TTGGACTGGT
Statistics
Matches: 183, Mismatches: 42, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
157 14 0.08
158 157 0.86
159 12 0.07
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.24
Consensus pattern (158 bp):
ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCAC
GCAGGGGGGACCGGACCGATCCCCGACTTGCGAATTATGCCTCTCCGATCGGCTAAGTGCCCATA
CGCCTATTTCATGGGTTGACTTAGGCAT
Found at i:19558255 original size:26 final size:26
Alignment explanation
Indices: 19558226--19558281 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19558216 TGGGTTGGCT
*
19558226 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
19558252 TAAGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
19558278 TAAG
1 TAAG
19558282 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCAAGTC
Found at i:19558638 original size:26 final size:26
Alignment explanation
Indices: 19558609--19558661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19558599 GTTGACTTAG
19558609 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
19558635 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
19558661 G
1 G
19558662 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:19559141 original size:197 final size:196
Alignment explanation
Indices: 19558774--19559166 Score: 504
Period size: 197 Copynumber: 2.0 Consensus size: 196
19558764 CCGTACGCCT
*
19558774 GTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTTCATGTCTAAACCCAGCCAGACCGAGGGTT
1 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAACCCAGCCAGACCGAGGGTT
* * * *
19558839 GTGGCAGCGGGATCGACAGCATGCAAAAGGGGACCCGGTCGATCCCCGACTTGTGCATTATGCCT
66 GTGGCAGCGAGATCAACAGCACGCAAAAGGGGACCCGGTCAATCCCCGACTTGTGCATTATGCCT
* * *
19558904 CTCCAGCCGGCTTAGCACCCGAACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTGC
131 CTCCAGCCGGCTTAGCACCCGAACGCTCGTTTCATGGGTTGACTAAGGCATACGGAGTTCATTGC
19558969 C
196 C
* * **
19558970 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTTCATGTCTAAGCCCCAGCTGGACCGAGGGT
1 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAA-ACCCAGCCAGACCGAGGGT
* * * * * * *
19559035 TGTGGTAGTGAGATCAACAGCACG-TAGAGGAGGATCGGGTCAATCCTCGACTTGTGCATTATGC
65 TGTGGCAGCGAGATCAACAGCACGCAAAAGG-GGACCCGGTCAATCCCCGACTTGTGCATTATGC
* ** * * *
19559099 CTCTCC-GATCGGCTCT-GTGCCCGAATGCTCGTTTCGTGGGTTGACTAAGGCATGCGGAGTTCA
129 CTCTCCAG-CCGGCT-TAGCACCCGAACGCTCGTTTCATGGGTTGACTAAGGCATACGGAGTTCA
19559162 TTGCC
192 TTGCC
19559167 AGTCTAAGAT
Statistics
Matches: 168, Mismatches: 25, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
196 48 0.29
197 119 0.71
198 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.27
Consensus pattern (196 bp):
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAACCCAGCCAGACCGAGGGTT
GTGGCAGCGAGATCAACAGCACGCAAAAGGGGACCCGGTCAATCCCCGACTTGTGCATTATGCCT
CTCCAGCCGGCTTAGCACCCGAACGCTCGTTTCATGGGTTGACTAAGGCATACGGAGTTCATTGC
C
Found at i:19559707 original size:26 final size:26
Alignment explanation
Indices: 19559658--19559710 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19559648 GTTGAGTTAG
*
19559658 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
19559684 GCATACGGGGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19559710 G
1 G
19559711 ATCAAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19561448 original size:26 final size:26
Alignment explanation
Indices: 19561411--19561463 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19561401 GTTGGCTTAG
*
19561411 GCATACGAAGTTGATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
19561437 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
19561463 G
1 G
19561464 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19563061 original size:25 final size:26
Alignment explanation
Indices: 19563027--19563078 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19563017 GTTGACTTAT
19563027 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19563052 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19563078 G
1 G
19563079 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19563550 original size:157 final size:154
Alignment explanation
Indices: 19563052--19563552 Score: 411
Period size: 159 Copynumber: 3.2 Consensus size: 154
19563042 CCCAGTCTAA
* * *
19563052 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACCGAGGGTTACGGTAGTCGGATCGGT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-ATCAGACCGAGGGTTACGGTAG-CGGATCGAT
* * * * *
19563116 AGCACGCATGGGGGA-CTGGGTCGATCCCTGACTTGCGTATTCTACCTCTCTGGTCGACTGAG-C
63 AGCACGCA-GGGGGATC-GGGCCGATCCTTG-CTTGCGCATTCTACCTCTTTGGTCGACTGAGTG
* * *
19563179 ATCCACACGCCCGTTTCGTGGGTTGCCTTAG
125 A-CCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * ** * * * *
19563210 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAACGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTACGGTAGC-GGATCGAT
* * * * * * ** * *
19563274 AGCACGTAGAGAGGGATCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGACCGGCTCCA-T
63 AGCACGCAG-G-GGGATCGGGCCGATCCT-TGCTTGCGCATTCTACCTCTTTGGTCGACT-GAGT
*
19563338 GACCGAAC-CGTCGTTTCGTGGGTTGACTTAG
124 GACCGCACGC-TCGTTTCGTGGGTTGACTTAG
* * *
19563369 GCATGCGGAGTACATTTCCAGTCTAAGATCAGATCAGACCGAGGGTTACGATAGCAGGATCGATA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGC-GGATCGATA
* * * *
19563434 GCACGCAGGGGGATCGGGCCGGTCCTTAGCTTACGCATTCTACATCTTTGGTCGACTGAGTGCCC
64 GCACGCAGGGGGATCGGGCCGATCCTT-GCTTGCGCATTCTACCTCTTTGGTCGACTGAGTGACC
*
19563499 GCACGCTCGTTTCGTGGGTTGGCTTAG
128 GCACGCTCGTTTCGTGGGTTGACTTAG
*
19563526 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
19563553 CATACGGAGT
Statistics
Matches: 259, Mismatches: 67, Indels: 35
0.72 0.19 0.10
Matches are distributed among these distances:
156 6 0.02
157 86 0.33
158 56 0.22
159 101 0.39
160 10 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCGGATCGATAGC
ACGCAGGGGGATCGGGCCGATCCTTGCTTGCGCATTCTACCTCTTTGGTCGACTGAGTGACCGCA
CGCTCGTTTCGTGGGTTGACTTAG
Found at i:19563562 original size:26 final size:26
Alignment explanation
Indices: 19563526--19563578 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19563516 GTTGGCTTAG
19563526 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
19563552 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
19563578 G
1 G
19563579 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:19563758 original size:26 final size:26
Alignment explanation
Indices: 19563722--19563774 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19563712 CTTGACTTAG
19563722 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
19563748 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
19563774 G
1 G
19563775 ATCTAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:19564359 original size:12 final size:12
Alignment explanation
Indices: 19564342--19564366 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19564332 TACGCATTAT
19564342 GCCTCTCCGGTC
1 GCCTCTCCGGTC
19564354 GCCTCTCCGGTC
1 GCCTCTCCGGTC
19564366 G
1 G
19564367 GTTGAGCACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (12 bp):
GCCTCTCCGGTC
Found at i:19564456 original size:26 final size:26
Alignment explanation
Indices: 19564405--19564457 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19564395 GTTGACTTAG
* *
19564405 GCATATGGAGTTCATCCCAAGTCTAA
1 GCATATGGAGTTAATCCCAAGCCTAA
19564431 GCATATGGAGTTAATTCCC-AGCCTAA
1 GCATATGGAGTTAA-TCCCAAGCCTAA
19564457 G
1 G
19564458 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATATGGAGTTAATCCCAAGCCTAA
Found at i:19564695 original size:685 final size:688
Alignment explanation
Indices: 19563686--19564971 Score: 1616
Period size: 685 Copynumber: 1.9 Consensus size: 688
19563676 TCCAACCGAC
*
19563686 TGAGCACCCGTACGCTCATTTTGTGGCTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCA
1 TGAGCACCCGCACGCTCATTTTGTGGCTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCA
* * * * **
19563751 TACGGAGTTCATTCCCAGTCTAAGATCTAACCGGACCGAGGGTTACGGTAGCAAGATCGACAGCA
66 TACGGAGTTAATTCCCAGCCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGATCGACAGCA
* * * * *
19563816 CGTATGGGGGACCAGGTCGATCCCCGATTTACGCATTCTACCTCTCCGACCGACTGAGCGCCCAC
131 CGCAGGGGGGACCAGGACGATCCCCGATGTA-GCATTCTACCTCTCCGACCGACTGAGCCCCCAC
* ** * * *
19563881 ATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATC
195 ACGCCCATTTCGTGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATA
* * * * * * ** *
19563946 GAGGGTTGTGGCAGCGGGTCGGGCAGCATGTAGAGAGGGATCGGGTTGATCCCCAGCTTACGCAT
260 GAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCAGCCTACGCAT
* *
19564011 TATGCCTCTTTGACTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGT
325 TATACCTCTCTGACTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGT
19564076 TCATTCCCAGTCTAAGATCAAACTGAACCAAAGG-T-T-GC-GA-CAGC-AGGATCGAC-GTCAC
390 TCATTCCCAGTCTAAGATCAAACTGAACCAAAGGTTATAGCAGACCAGCAAGGATCGACAG-CAC
* ** * * * **
19564134 GCAGGGGGGACCAGGTTGATCCCTGTCTTGTGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCA
454 ACAGGGGGGACCAGGTCAATCCCCGACTTGTACATT-TGCCTCTCCGACCGGCTGAGCACCCGCA
*
19564199 CGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAG-TCG-ACC
518 CGCTAGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCT-GAACC
19564262 GAGGGTTGTGGCAGCAGGACCGGCAACGCGATCGATAGCACACAGAAAGGGATCGGGCTGATCCT
582 GAGGGTTGTGGCAGCAGGACCGGCAACGCGATCGATAGCACACAGAAAGGGATCGGGCTGATCCT
19564327 CAGCTTACGCATTATGCCTCTCCGGTCGCCTCTCCGGTCGGT
647 CAGCTTACGCATTATGCCTCTCCGGTCGCCTCTCCGGTCGGT
* **
19564369 TGAGCACCCGCACGCTC-TTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT-CCCAAGTCTAAG
1 TGAGCACCCGCACGCTCATTTT-GTGGCTTGACTTAGGCATACAGAGTTCATCCCCAA-TCTAAG
* * * *
19564432 CATATGGAGTTAATTCCCAGCCTAAGATCGGACCAGACCGA-GGTTGCGACAGCAGGATCGACAG
64 CATACGGAGTTAATTCCCAGCCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGATCGACAG
* ** *
19564496 CACGCAGGGGGGATC-GGACTGATCCCCGGCATGT-GCATTC-AGCCTCTCC-AGCCGGTTGATC
129 CACGCAGGGGGGACCAGGAC-GATCCCC-G-ATGTAGCATTCTA-CCTCTCCGA-CCGACTGAGC
* *
19564557 ATCCGCCACCCGCCCATTTCGTGGCTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCC
189 --CC-CCACACGCCCATTTCGTGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
19564622 AGCCGGATAGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCC-G
251 AGCCGGATAGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCAG
* * * * * *
19564686 ACCTACGCATTCTACCTCTCTGGCTGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGG
316 -CCTACGCATTATACCTCTCTGACTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * *
19564751 CATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTACGATAGCAAGACCAGCAG
380 CATACAGAGTTCATTCCCAGTCTAAGATCAAACTGAACCAAAGGTT---ATAGC-AGACCAGCA-
* * * * *
19564816 TAGGATCGACAGCACATAGGGGGGACCGGGTCAATCCCCGACTTGTACATTTTCCTCTCCGGCCT
440 -AGGATCGACAGCACACAGGGGGGACCAGGTCAATCCCCGACTTGTACATTTGCCTCTCCGACCG
* * * * *
19564881 GCTGAGCACCCGTACGTTTGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
504 GCTGAGCACCCGCACGCTAGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATATCTAAG
19564946 CCCCAGCTGAACCGAGGGTTGTGGCA
569 CCCCAGCTGAACCGAGGGTTGTGGCA
19564972 ACGGGACTAG
Statistics
Matches: 505, Mismatches: 72, Indels: 38
0.82 0.12 0.06
Matches are distributed among these distances:
681 5 0.01
682 67 0.13
683 84 0.17
684 5 0.01
685 201 0.40
686 1 0.00
690 1 0.00
691 2 0.00
693 2 0.00
694 4 0.01
696 75 0.15
697 57 0.11
698 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (688 bp):
TGAGCACCCGCACGCTCATTTTGTGGCTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCA
TACGGAGTTAATTCCCAGCCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGATCGACAGCA
CGCAGGGGGGACCAGGACGATCCCCGATGTAGCATTCTACCTCTCCGACCGACTGAGCCCCCACA
CGCCCATTTCGTGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATAG
AGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCAGCCTACGCATT
ATACCTCTCTGACTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTT
CATTCCCAGTCTAAGATCAAACTGAACCAAAGGTTATAGCAGACCAGCAAGGATCGACAGCACAC
AGGGGGGACCAGGTCAATCCCCGACTTGTACATTTGCCTCTCCGACCGGCTGAGCACCCGCACGC
TAGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCTGAACCGAGG
GTTGTGGCAGCAGGACCGGCAACGCGATCGATAGCACACAGAAAGGGATCGGGCTGATCCTCAGC
TTACGCATTATGCCTCTCCGGTCGCCTCTCCGGTCGGT
Found at i:19565158 original size:159 final size:159
Alignment explanation
Indices: 19564818--19565444 Score: 617
Period size: 159 Copynumber: 3.9 Consensus size: 159
19564808 ACCAGCAGTA
** * * * * * * *
19564818 GGATCGACAGCACATAG-GGGGGACCGGGTCAATCCCC-GACTTGTACATT-TTCCTCTCCGGCC
1 GGATCGACAGCACGCAGAGGAGGATCGGGCCAATCCCCAG-CTTATGCATTCTGCCTCTCCGACC
* * * * * * *
19564880 TGCTGAGCACCCGTACGTTTGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAA
* *
19564945 GCCCCAG-CTGAACCGAGGGTTGTGGCAACG
130 GCCCCAGTCAG-ACCGAGGGTTGCGGCAACG
* * ** *
19564975 GGA-CTAGCAGCATGCAGAGGAGGATCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGATC
1 GGATCGA-CAGCACGCAGAGGAGGATCGGGCCAATCCCCAGCTTATGCATTCTGCCTCTCCGACC
* * * *
19565039 GGCTGAGCACCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAA
65 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAA
*
19565104 GCCCCAGTCAGACCGAGGGTTGCGGCAGCG
130 GCCCCAGTCAGACCGAGGGTTGCGGCAACG
* * *
19565134 GGATCGACAGCACGCAGAAGAGGATCGGGCCAATCCCGAGGCTTATGCATTATGCCTCTCC-AGC
1 GGATCGACAGCACGCAGAGGAGGATCGGGCCAATCCCCA-GCTTATGCATTCTGCCTCTCCGA-C
* ** * * * *
19565198 CGGCTCAGTGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGAAGTTCATTCC-TAGTCT
64 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATA-TCT
** * * * * *
19565262 AAG-ATCGGACCAGACTGAGGGTTGCGACAACA
128 AAGCCCCAG-TCAGACCGAGGGTTGCGGCAACG
* * * * * * *
19565294 GGATCGACAGCACGCA-AGGGGGGACCGGGTCGATCCCCGGCTTATGCATTCTACCTCTCCGGCC
1 GGATCGACAGCACGCAGA-GGAGGATCGGGCCAATCCCCAGCTTATGCATTCTGCCTCTCCGACC
*
19565358 GGCTGAGCACCCGCACGCTCGTTTCATGGGTT-GCTTTAGGCATACGGAGTTCATTCCATGTCTA
65 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGC-TTAGGCATACGGAGTTCATTCCATATCTA
*
19565422 AGCCCCAGTCGGACCGAGGGTTG
129 AGCCCCAGTCAGACCGAGGGTTG
19565445 TAGCAGCAGG
Statistics
Matches: 382, Mismatches: 73, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 10 0.03
158 26 0.07
159 218 0.57
160 126 0.33
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
GGATCGACAGCACGCAGAGGAGGATCGGGCCAATCCCCAGCTTATGCATTCTGCCTCTCCGACCG
GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG
CCCCAGTCAGACCGAGGGTTGCGGCAACG
Found at i:19565353 original size:319 final size:321
Alignment explanation
Indices: 19565007--19565798 Score: 841
Period size: 343 Copynumber: 2.4 Consensus size: 321
19564997 GATCGGGCCA
* * * * *
19565007 ATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGTATGCCCGTTTCATGGGTTG
1 ATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTG
*
19565072 GCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCAGACCGAGGGTTGCGGCAGCGGGA
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GACCGAGGGTTGCGGCAGCGGGA
19565137 TCGACAGCACGCAGAAGAGGATCGGGCCAATCC-CGAGGCTTATGCATTATGCCTCTCCAGCCGG
130 TCGACAGCACGCAGAAGAGGATCGGGCCAATCCTC--GGCTTATGCATTATGCCTCTCCAGCCGG
*
19565201 CTCAGTGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGAAGTTCATTCCT-AGTCTAAG
193 CTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TCCTCAGTCTAAG
* *
19565265 -ATCG-G-A-CCAGACT-GA-GGGTTGCGACAACAGGATCG-ACAGCACGCAAGGGGGGACCGGG
257 AATCGTGTATCCAAACTAGATGGATTG-GAC-ACAGGATCGAACAGCACGC-AGGGGGGACCGGG
19565323 TCG
319 TCG
* ** *
19565326 ATCCCCGGCTTATGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT-
1 ATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTG
*
19565390 GCTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTAGCAGCAGG
66 GC-TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GACCGAGGG-T-T----GC-GG
* ** * *** *
19565455 ACTGGTAGCAGGATCGGTAGCACGCAGAAGGGGATCGGGTTGATCCTCGGCTTGTGCATTATGCC
122 -C----AGCGGGATCGACAGCACGCAGAAGAGGATCGGGCCAATCCTCGGCTTATGCATTATGCC
** ** * * * *
19565520 TCTCTGGTTGGCTGAGTGCCCGTAGGCTCGTTTCTTGGGTTGACTTAGGCATACGAAGTTCATCC
182 TCTCCAGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCC
* ** * *
19565585 TCAGTCTAAGCATATGGTGTTCATTCCCAAACTAAGATTGGATTGGACTGAGGGTTGTAACAGCA
247 TCAGTCTAAG-A-ATCGTG-T-A-T-CCAAACT-AGA-TGGATTGGACACAGGATCG-AACAGCA
19565650 CGCAGGGGGGACCGGGTCG
303 CGCAGGGGGGACCGGGTCG
* * * *
19565669 ATCCCCGGCTTGCGCATTTTACCTCTCC-AGTCGGCTGAGCACCCGCACGCCCGTTTCAGGGGTA
1 ATCCCCGGCTTACGCATTCTACCTCTCCGA-TCGGCTGAGCACCCGCACGCCCGTTTCATGGGTT
* * *
19565733 GACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCAAGGGTTGTGGCAGCGGG
65 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG-ACCGAGGGTTGCGGCAGCGGG
19565798 A
129 A
19565799 CTGGCAGCAC
Statistics
Matches: 390, Mismatches: 49, Indels: 56
0.79 0.10 0.11
Matches are distributed among these distances:
318 2 0.01
319 101 0.26
320 1 0.00
321 1 0.00
325 2 0.01
326 2 0.01
327 1 0.00
329 4 0.01
330 77 0.20
331 39 0.10
332 1 0.00
333 3 0.01
334 1 0.00
335 1 0.00
336 2 0.01
337 2 0.01
340 6 0.02
341 1 0.00
342 9 0.02
343 119 0.31
344 15 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (321 bp):
ATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGACCGAGGGTTGCGGCAGCGGGAT
CGACAGCACGCAGAAGAGGATCGGGCCAATCCTCGGCTTATGCATTATGCCTCTCCAGCCGGCTC
AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCTCAGTCTAAGAATC
GTGTATCCAAACTAGATGGATTGGACACAGGATCGAACAGCACGCAGGGGGGACCGGGTCG
Found at i:19566090 original size:26 final size:26
Alignment explanation
Indices: 19566040--19566092 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19566030 GTTGGCTTAG
*
19566040 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
19566066 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
19566092 G
1 G
19566093 ATCGGGCTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:19566844 original size:26 final size:26
Alignment explanation
Indices: 19566808--19566860 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19566798 GTTGACTTAG
19566808 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
19566834 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19566860 G
1 G
19566861 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19568059 original size:26 final size:26
Alignment explanation
Indices: 19568030--19568082 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19568020 GTTGACTTAG
*
19568030 GCATACAGAGTTCATCCCCCGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
19568056 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19568082 G
1 G
19568083 ATAGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19569483 original size:159 final size:158
Alignment explanation
Indices: 19569121--19569488 Score: 361
Period size: 159 Copynumber: 2.3 Consensus size: 158
19569111 CCCACTCTAA
* * * * * * * *
19569121 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACC-AAATCAAGGGTTGCGGTAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGAACT-GAGGGTTGCAGTAGTAGGACCGAC
* * * *
19569185 AGCACGCAGGGGGGACCCGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCGGTTGAGCTC
65 AGCACGCAGGGGGGACCCGGCCGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCTC
*
19569250 CCGCACGCATGTTTAATGGGTTGGCTTAG
130 CCGCACGCATGTTTAATGGGTTGACTTAG
* *** * * * * *
19569279 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTAGTAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCT-AGGATCAGACCGAACTGAGGGTTGCAGTAGTAGGACCGA
* * ** * **
19569342 CAGCACGCAGAGGGGGA-CTGAGCCGATCCTCGACTTGTGCATTATGCCTCTCCTGTTGGCTCAG
64 CAGCACGCAG-GGGGGACCCG-GCCGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAG
*
19569406 -TGCCCGCACGC-TCGTTTCATGGGTTGACTTAG
127 CT-CCCGCACGCAT-GTTTAATGGGTTGACTTAG
19569438 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGAACTGAGGGTTGCAG
1 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGAACTGAGGGTTGCAG
19569489 CAACAGAATC
Statistics
Matches: 164, Mismatches: 37, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
157 2 0.01
158 55 0.34
159 104 0.63
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGAACTGAGGGTTGCAGTAGTAGGACCGACA
GCACGCAGGGGGGACCCGGCCGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCTCC
CGCACGCATGTTTAATGGGTTGACTTAG
Found at i:19570469 original size:26 final size:26
Alignment explanation
Indices: 19570440--19570492 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19570430 TTTGGCTTAG
* * *
19570440 GCATAAGGAGTTTATTCCATGTCTAA
1 GCATAAGAAGTTCATTCCAAGTCTAA
*
19570466 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATAAGAAGTTCATTCCAAGTCTAA
19570492 G
1 G
19570493 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCAAGTCTAA
Found at i:19570687 original size:26 final size:26
Alignment explanation
Indices: 19570651--19570702 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19570641 TGACTTAGGC
19570651 ATACGAAGTTCA-TCCTCAGTCTAAGA
1 ATACGAAGTTCATTCC-CAGTCTAAGA
*
19570677 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
19570703 TTAGACTAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:19571041 original size:26 final size:26
Alignment explanation
Indices: 19570994--19571043 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
19570984 GACTTAGACA
* *
19570994 TACGGAGTTCATTCCATGTCTAAGCT
1 TACGGAGTTCATCCCATATCTAAGCT
19571020 TACGGAGTTCACTCCCA-ATCTAAG
1 TACGGAGTTCA-TCCCATATCTAAG
19571044 AGTTTGAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCATATCTAAGCT
Found at i:19571950 original size:26 final size:26
Alignment explanation
Indices: 19571921--19571976 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
19571911 TGGGTTGACA
* *
19571921 TAAGCATACGGAGTTTA-TCCCTAGTC
1 TAAGCATACGAAGTTCATTCCC-AGTC
19571947 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
19571973 TAAG
1 TAAG
19571977 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Done.