Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 180 of 402
Found at i:19572670 original size:26 final size:26
Alignment explanation
Indices: 19572634--19572686 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19572624 GTTGACTTAG
19572634 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19572660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19572686 G
1 G
19572687 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19574250 original size:26 final size:26
Alignment explanation
Indices: 19574199--19574251 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19574189 GCTGGCTTAG
*
19574199 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGACTAA
*
19574225 GCATACGGAGTTCATTCCCA-GACTAA
1 GCATACAGAGTTCATT-CCATGACTAA
19574251 G
1 G
19574252 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGACTAA
Found at i:19574577 original size:158 final size:159
Alignment explanation
Indices: 19574332--19574739 Score: 427
Period size: 158 Copynumber: 2.6 Consensus size: 159
19574322 CAATCGTCAA
* ** * * *
19574332 CTTGTGCA-TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTTGTTTCGA-GGGTTGACTTAGG
1 CTTGAGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCTGTTTC-ATGGGTTGGCTTAGG
** * * * **
19574395 CATACGGAGTTCATTCCCA-GTCTAAG-ATTAGACTAGATCGAGGATTGCGGTAGCAGGATTGGT
65 CATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACCGAGGATTGCGGTAGCAGGATCGAC
*
19574458 AGCACGTAG-GG-GGCACCGGGTCGATCCCCGG
128 AGCACATAGAGGAGG-ACCGGGTCGATCCCCGG
*
19574489 CTT-ACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGG
1 CTTGA-GCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGG
* * * * * * * *
19574553 CATAAGGAGTTCATTACATATCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGATCGACAG
65 CATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGATTGCGGTAGCAGGATCGACAG
*
19574618 CACATAGAGGAGGATCGGGTCGATCCCCGG
130 CACATAGAGGAGGACCGGGTCGATCCCCGG
** * * * * *
19574648 CTTGAGCATTCTGCCTCTCTAACCGAGTGACCACCCGCAC-ACTCGTTTCGTGGGTTGGCTTAGG
1 CTTGAGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCT-GTTTCATGGGTTGGCTTAGG
19574712 CATACGGAGTTCATTCCATGTCTAAGCA
65 CATACGGAGTTCATTCCATGTCTAAGCA
19574740 TATGGAGTTC
Statistics
Matches: 206, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
157 9 0.04
158 99 0.48
159 95 0.46
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
CTTGAGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGATTGCGGTAGCAGGATCGACAGC
ACATAGAGGAGGACCGGGTCGATCCCCGG
Found at i:19575463 original size:26 final size:26
Alignment explanation
Indices: 19575434--19575486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19575424 GTTGACTTAG
*
19575434 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
*
19575460 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
19575486 G
1 G
19575487 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:19576341 original size:26 final size:26
Alignment explanation
Indices: 19576312--19576364 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19576302 GTTGAATTAG
*
19576312 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
19576338 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19576364 G
1 G
19576365 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19576544 original size:26 final size:26
Alignment explanation
Indices: 19576508--19576560 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19576498 GTTGGCTTAG
19576508 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19576534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19576560 G
1 G
19576561 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19583419 original size:157 final size:156
Alignment explanation
Indices: 19583107--19583421 Score: 506
Period size: 157 Copynumber: 2.0 Consensus size: 156
19583097 TCTAAAAAAT
* * **
19583107 TTTTTAAAAATCCCGAACCGTAAAAATTTTGAAAATAAGGAAAAATAGAAAACGGTTTGTCTTGC
1 TTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATAAGGAAAAATAGAAAACGGGTCATCTTGC
*
19583172 CACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
66 CACGAAACTTCACATGAAGGCTCAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
19583237 GGCACGTCAGAAATATGAAGATGTGC
131 GGCACGGCAGAAATATGAAGATGTGC
* * * *
19583263 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGG-AAAATAGAGAATGGGTCATCTT
1 TTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAAT-AAGGAAAAATAGAAAACGGGTCATCTT
19583327 GCCACGAAACTTCACATGAAGGCTCAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
64 GCCACGAAACTTCACATGAAGGCTCAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19583392 TTGGCATGGCAGAAATATGAAGATGTGC
129 TTGGCACGGCAGAAATATGAAGATGTGC
19583420 TT
1 TT
19583422 GAACCCACCT
Statistics
Matches: 146, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
156 24 0.16
157 119 0.82
158 3 0.02
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (156 bp):
TTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATAAGGAAAAATAGAAAACGGGTCATCTTGC
CACGAAACTTCACATGAAGGCTCAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGGCAGAAATATGAAGATGTGC
Found at i:19583929 original size:171 final size:168
Alignment explanation
Indices: 19583558--19583940 Score: 405
Period size: 171 Copynumber: 2.2 Consensus size: 168
19583548 GAGTTTATTA
*
19583558 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGACAACAAG
1 CCAGTCTAAGATCGGACC-GACCGAGGGTTGTGGCAGCAGGACCAACAGCAGGATCGACAACAAG
* * * *
19583623 TAGGGGGGACCAGGTCGATCCCTGGCTTGTGCATTTTACCTCTCCGATCGGTTGAGCGCCCGCAC
65 TAAGGGGGACCAGGTCGATCCCTGGCTTGTGCATTATACCTCTCCGATCGGGTCAGCGCCCGCAC
*
19583688 GCTCATTTCGTGGATTGACTTAGGCATACGAAGTTCATT
130 GCTCATTTCGTGGATTGACTTAGGCATACGAAGTTCATC
* ** *** * * * *
19583727 CCATGTCTAAG-CCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATTGATAGCA
1 CCA-GTCTAAGATCGGA-CCG-ACCGAGGGTTGTGGCAGCAGGACCAACAGCAGGATCGACAACA
* * * * * *
19583791 CGTAAAGGGGGACC-GGGCTGATCGCTGGCTTGTGCATTATGCCTCTTCG-GCTGGGTCAGCGCC
63 AGT-AAGGGGGACCAGGTC-GATCCCTGGCTTGTGCATTATACCTCTCCGATC-GGGTCAGCGCC
* * *
19583854 CGTACGCTCATTTTGTGGGA-TGACTTATGCATACGAAGTTCATCC
125 CGCACGCTCATTTCGT-GGATTGACTTAGGCATACGAAGTTCAT-C
* *
19583899 CCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGTAGGA
1 CCAGTCTAAGATCGGACC-GACCGAGGGTTGTGGCAGCAGGA
19583941 TCGACAACAC
Statistics
Matches: 174, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
169 6 0.03
170 50 0.29
171 109 0.63
172 9 0.05
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.22
Consensus pattern (168 bp):
CCAGTCTAAGATCGGACCGACCGAGGGTTGTGGCAGCAGGACCAACAGCAGGATCGACAACAAGT
AAGGGGGACCAGGTCGATCCCTGGCTTGTGCATTATACCTCTCCGATCGGGTCAGCGCCCGCACG
CTCATTTCGTGGATTGACTTAGGCATACGAAGTTCATC
Found at i:19584077 original size:26 final size:26
Alignment explanation
Indices: 19584041--19584092 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19584031 GTTGGCTTAG
19584041 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19584067 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19584093 CCGACGGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19585905 original size:159 final size:158
Alignment explanation
Indices: 19585698--19586074 Score: 497
Period size: 158 Copynumber: 2.4 Consensus size: 158
19585688 GTCGGCTGAG
* * * *
19585698 CGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAA
19585763 CCA-AACCGAGGGTTGTGGCAGCAGGA-CTGACAGCACACAGAGGGGGATTGGGCCGATCCCCGG
66 CCAGAA-CGAGGGTTGTGGCAGCAGGATC-GACAGCACACAG-GGGGGATTGGGCCGATCCCCGG
* * *
19585826 CTTGCGTATTATGCCTCTTCGGCCAACTCAA
128 CTAGCGCATTATGCCTCTCCGGCCAACTCAA
* ** * * **
19585857 CGCCCGTACGCTTGTTTCGTGGGTTCACTTATGCATACAGAGTTCATTCCATGTCTAAGATCAAA
1 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAA
* * *
19585922 CCAGAATGAGGGTTGTGGCAGCAGGATCGACAGCATATAGGGGGGATTGGGCCGATCCCCGGCTA
66 CCAGAACGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGATTGGGCCGATCCCCGGCTA
* * * * * *
19585987 GTGCATTCTGCCTCTCCGGTCAGCTGAG
131 GCGCATTATGCCTCTCCGGCCAACTCAA
*
19586015 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
19586075 ATATGGAGTT
Statistics
Matches: 186, Mismatches: 30, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
158 97 0.52
159 86 0.46
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAA
CCAGAACGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGATTGGGCCGATCCCCGGCTA
GCGCATTATGCCTCTCCGGCCAACTCAA
Found at i:19586051 original size:158 final size:159
Alignment explanation
Indices: 19585671--19586073 Score: 533
Period size: 159 Copynumber: 2.5 Consensus size: 159
19585661 CCTTGGAGTA
* * * *
19585671 TGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
1 TGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * *
19585736 GGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAGGACTGACAGCACAC
66 GGAGTTCATTCCATGTCTAAGACCAAACCAAACCGAGGGTTGTGGCAGCAGGACTGACAGCACAC
*
19585801 AGAGGGGGATTGGGCCGATCCCCGGCTTG
131 AGAGGGGGATTGGGCCGATCCCCGGCTAG
* * * * * * * * * ** *
19585830 CGTATTATGCCTCTTCGGCCAACTCAACGCCCGTACGCTTGTTTCGTGGGTTCACTTATGCATAC
1 TGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * *
19585895 AGAGTTCATTCCATGTCTAAGATCAAACCAGAA-TGAGGGTTGTGGCAGCAGGA-TCGACAGCAT
66 GGAGTTCATTCCATGTCTAAGACCAAACCA-AACCGAGGGTTGTGGCAGCAGGACT-GACAGCAC
*
19585958 ATAG-GGGGGATTGGGCCGATCCCCGGCTAG
129 ACAGAGGGGGATTGGGCCGATCCCCGGCTAG
*
19585988 TGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 TGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
19586053 GGAGTTCATTCCATGTCTAAG
66 GGAGTTCATTCCATGTCTAAG
19586074 CATATGGAGT
Statistics
Matches: 203, Mismatches: 39, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
158 98 0.48
159 103 0.51
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
TGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGACCAAACCAAACCGAGGGTTGTGGCAGCAGGACTGACAGCACAC
AGAGGGGGATTGGGCCGATCCCCGGCTAG
Found at i:19586083 original size:26 final size:26
Alignment explanation
Indices: 19586047--19586099 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19586037 GTTGGCTTAG
19586047 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
19586073 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19586099 G
1 G
19586100 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19587895 original size:83 final size:83
Alignment explanation
Indices: 19587746--19587900 Score: 195
Period size: 83 Copynumber: 1.9 Consensus size: 83
19587736 AGGACCGGGG
* * * * ** **
19587746 CCGATCCCCGGTTGCGCATTCTGCTCTTCGGCTTGGCTGAGCGCCCGCACGCCCGTTTGTCGGGT
1 CCGATCCCCGGTTACGCATTATGCTCTTCGGCTCGGCTCAGCGCCCGCACGCCCGTTCCTAAGGT
*
19587811 TGGCTTAGCCTAGGAGGT
66 TGACTTAGCCTAGGAGGT
* *
19587829 CCGATCCTCGGCTTACGCATTATGCTCTTCGG-TCGGCTCAGCGCCCGCACGCTCGTTCCTAAGG
1 CCGATCCCCGG-TTACGCATTATGCTCTTCGGCTCGGCTCAGCGCCCGCACGCCCGTTCCTAAGG
19587893 TTGACTTA
65 TTGACTTA
19587901 TGCATACGGA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
83 42 0.70
84 18 0.30
ACGTcount: A:0.11, C:0.34, G:0.28, T:0.27
Consensus pattern (83 bp):
CCGATCCCCGGTTACGCATTATGCTCTTCGGCTCGGCTCAGCGCCCGCACGCCCGTTCCTAAGGT
TGACTTAGCCTAGGAGGT
Found at i:19588098 original size:25 final size:26
Alignment explanation
Indices: 19588060--19588111 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19588050 GTTGTCTTAG
19588060 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
19588086 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19588111 G
1 G
19588112 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19589019 original size:26 final size:25
Alignment explanation
Indices: 19588971--19589020 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
19588961 TGGCTTAGGT
*
19588971 ATACGAGTTCATTCCATGTCTAAGC
1 ATACGAGTTCATTCCATGCCTAAGC
19588996 ATACGGAGTTCATTCCCA-GCCTAAG
1 ATAC-GAGTTCATT-CCATGCCTAAG
19589021 ATTTGAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 4 0.18
26 15 0.68
27 3 0.14
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (25 bp):
ATACGAGTTCATTCCATGCCTAAGC
Found at i:19589742 original size:26 final size:26
Alignment explanation
Indices: 19589712--19589764 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19589702 GTTGACTTAG
*
19589712 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
19589738 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19589764 G
1 G
19589765 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19592673 original size:220 final size:219
Alignment explanation
Indices: 19592278--19592722 Score: 664
Period size: 220 Copynumber: 2.0 Consensus size: 219
19592268 TGTCTGACAT
*
19592278 GGGGACACTTTTTCAAGCGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGT
1 GGGGACACTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19592343 GCATGCCAACAAAAATGCAAGGACCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAA
66 GCATGCCAAAAAAAATACAAGAACCACCTCTACCAAATTTGGAGACAAAACACTTTCTAAAAAAA
*
19592408 TTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGC
131 TTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGGGTCGTCTTGC
*
19592473 CATGAAACTT-CACATGAAGGCTTA
196 CACGAAACTTCCACATGAAGGC-TA
*
19592497 GGGGACACTTTTTTTAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTG
1 GGGGACAC-TTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19592562 TGCATGCCAAAAAAAATACAAGAATCACCTCTACC-AATTTGGATACAAAACACTTTCTAAAAAA
65 TGCATGCCAAAAAAAATACAAGAACCACCTCTACCAAATTTGGAGACAAAACACTTTCTAAAAAA
* * ** * *
19592626 TTTTTTTAAAAATCCCGAACCGTAAAAA-TTTTGAAAATAAG-GAAAAATAGAAAACGGTTTGTC
130 --ATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGGGTCGTC
19592689 TTGCCACGAAACTTCCACATGAAGGCTA
192 TTGCCACGAAACTTCCACATGAAGGCTA
19592717 GGGGAC
1 GGGGAC
19592723 CATTGTATGA
Statistics
Matches: 204, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
219 34 0.17
220 134 0.66
221 36 0.18
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (219 bp):
GGGGACACTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGAACCACCTCTACCAAATTTGGAGACAAAACACTTTCTAAAAAAA
TTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGGGTCGTCTTGC
CACGAAACTTCCACATGAAGGCTA
Found at i:19592918 original size:157 final size:156
Alignment explanation
Indices: 19592628--19592942 Score: 499
Period size: 157 Copynumber: 2.0 Consensus size: 156
19592618 CTAAAAAATT
* * **
19592628 TTTTTAAAAATCCCGAACCGTAAAAATTTTGAAAATAAGGAAAAATAGAAAACGGTTTGTCTTGC
1 TTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATAAGGAAAAATAGAAAACGGGTCATCTTGC
19592693 CACGAAACTTCCACATGAAGGCTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
66 CACGAAACTTCCACATGAAGGCTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
19592758 GGCACGTCAGAAATATGAAGATGTGC
131 GGCACGGCAGAAATATGAAGATGTGC
* * * *
19592784 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGG-AAAATAGAGAATGGGTCATCTT
1 TTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAAT-AAGGAAAAATAGAAAACGGGTCATCTT
19592848 GCCACGAAACTT-CACATGAAGGCTCAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
64 GCCACGAAACTTCCACATGAAGGCT-AGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19592912 ATTGGCATGGCAGAAATATGAAGATGTGC
128 ATTGGCACGGCAGAAATATGAAGATGTGC
19592941 TT
1 TT
19592943 GAACCACCTA
Statistics
Matches: 146, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
156 36 0.25
157 107 0.73
158 3 0.02
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (156 bp):
TTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATAAGGAAAAATAGAAAACGGGTCATCTTGC
CACGAAACTTCCACATGAAGGCTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGGCAGAAATATGAAGATGTGC
Found at i:19593449 original size:170 final size:169
Alignment explanation
Indices: 19593078--19593460 Score: 391
Period size: 170 Copynumber: 2.2 Consensus size: 169
19593068 GAGTTTATTA
*
19593078 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGACAACAAG
1 CCAGTCTAAGATCGGACC-GACCGAGGGTTGTGGCAGCAGGACCAACAGCAGGATCGACAACAAG
* * * *
19593143 TAGAGGGGACCAGGTCGATCCCTGGCTTGTGCATTTTACCTCTCCGATCGGTTTGAGCGCCCGCA
65 TAAAGGGGACCAGGTCGATCCCTGGCTTGTGCATTATACCTCTCCGATCGGTGTCAGCGCCCGCA
*
19593208 CGCTCATTTCGTGGATTGACTTAGGCATACGAAGTTCATT
130 CGCTCATTTCGTGGATTGACTTAGGCATACGAAGTTCATC
* ** *** * * * *
19593248 CCATGTCTAAG-CCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATTGATAGCA
1 CCA-GTCTAAGATCGGA-CCG-ACCGAGGGTTGTGGCAGCAGGACCAACAGCAGGATCGACAACA
* * * * * *
19593312 CGTAAAGGGGGACC-GGGCTGATCGCTGGCTTGTGCATTAT-GCTCTTCG-GCTGG-GTCAGCGC
63 AGTAAA-GGGGACCAGGTC-GATCCCTGGCTTGTGCATTATACCTCTCCGATC-GGTGTCAGCGC
* * *
19593373 CCGTACGCTCATTTTGTGGGA-TGACTTATGCATACGAAGTTCATCC
125 CCGCACGCTCATTTCGT-GGATTGACTTAGGCATACGAAGTTCAT-C
* *
19593419 CCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGTAGGA
1 CCAGTCTAAGATCGGACC-GACCGAGGGTTGTGGCAGCAGGA
19593461 TCGACAACAC
Statistics
Matches: 173, Mismatches: 30, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
170 79 0.46
171 68 0.39
172 26 0.15
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.22
Consensus pattern (169 bp):
CCAGTCTAAGATCGGACCGACCGAGGGTTGTGGCAGCAGGACCAACAGCAGGATCGACAACAAGT
AAAGGGGACCAGGTCGATCCCTGGCTTGTGCATTATACCTCTCCGATCGGTGTCAGCGCCCGCAC
GCTCATTTCGTGGATTGACTTAGGCATACGAAGTTCATC
Found at i:19593600 original size:27 final size:27
Alignment explanation
Indices: 19593562--19593615 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
19593552 GTTGGCTTAG
19593562 GCATAACGGAGTTCATTCCATGTCTAA
1 GCATAACGGAGTTCATTCCATGTCTAA
19593589 GCATAACGGAGTTCATTCCATGTCTAA
1 GCATAACGGAGTTCATTCCATGTCTAA
19593616 CCGACGGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (27 bp):
GCATAACGGAGTTCATTCCATGTCTAA
Found at i:19595119 original size:26 final size:26
Alignment explanation
Indices: 19595072--19595122 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19595062 TTGACTTAGG
*
19595072 CATACAGAGTTCATCCGTAGTCTAAC
1 CATACAGAGTTCATCCGCAGTCTAAC
*
19595098 CATACGGAGTTCATTCC-CAGTCTAA
1 CATACAGAGTTCA-TCCGCAGTCTAA
19595123 GATCGGATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCGCAGTCTAAC
Found at i:19595391 original size:158 final size:158
Alignment explanation
Indices: 19595223--19595598 Score: 497
Period size: 158 Copynumber: 2.4 Consensus size: 158
19595213 GTCGGCTGAG
* * * *
19595223 CGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAA
19595288 CCA-AACCGAGGGTTGTGGCAGCAGGA-CTGACAGCACACAGAGGGGGATTGGGCCGATCCCCGG
66 CCAGAA-CGAGGGTTGTGGCAGCAGGATC-GACAGCACACAG-GGGGGATTGGGCCGATCCCCGG
* *
19595351 CTTGCGTATTATGCCTCTTC-GCCAACTCAA
128 CTTGCGCATTATGCCTCTCCGGCCAACTCAA
* ** * * **
19595381 CGCCCGTACGCTTGTTTCGTGGGTTCACTTATGCATACAGAGTTCATTCCATGTCTAAGATCAAA
1 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAA
* * *
19595446 CCAGAATGAGGGTTGTGGCAGCAGGATCGACAGCATATAGGGGGGATTGGGCCGATCCCCGGCTT
66 CCAGAACGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGATTGGGCCGATCCCCGGCTT
* * * * * *
19595511 GTGCATTCTGCCTCTCCGGTCAGCTGAG
131 GCGCATTATGCCTCTCCGGCCAACTCAA
*
19595539 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
19595599 ATATGGAGTT
Statistics
Matches: 186, Mismatches: 29, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
157 38 0.20
158 145 0.78
159 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAA
CCAGAACGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGATTGGGCCGATCCCCGGCTT
GCGCATTATGCCTCTCCGGCCAACTCAA
Found at i:19595607 original size:26 final size:26
Alignment explanation
Indices: 19595571--19595623 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19595561 GTTGGCTTAG
19595571 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
19595597 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19595623 G
1 G
19595624 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19597183 original size:26 final size:26
Alignment explanation
Indices: 19597147--19597196 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
19597137 GTTGACTTAG
*
19597147 GCATATGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
19597173 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
19597197 GAGATCGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19597410 original size:86 final size:86
Alignment explanation
Indices: 19597257--19597415 Score: 230
Period size: 86 Copynumber: 1.8 Consensus size: 86
19597247 AAGGACCGGG
* * * * *
19597257 CCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGG
1 CCGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCCCGTTTCCTAGG
*
19597322 TTGGCTTAGTCCTAGGGAGGT
66 TTGACTTAGTCCTAGGGAGGT
* *
19597343 CCGATCCTCGGCTTACGCATTATGCCTCTTCGG-TCGGCTCAGCGCCCGCACGCTCGTTTCCTAG
1 CCGATCCCCGGCTTACGCATTATGCCTCTTCGGCT-GGCTCAGCGCCCGCACGCCCGTTTCCTAG
19597407 GTTGACTTA
65 GTTGACTTA
19597416 TGCATACGGA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
85 1 0.02
86 63 0.98
ACGTcount: A:0.10, C:0.35, G:0.28, T:0.27
Consensus pattern (86 bp):
CCGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCCCGTTTCCTAGG
TTGACTTAGTCCTAGGGAGGT
Found at i:19597608 original size:26 final size:26
Alignment explanation
Indices: 19597574--19597626 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19597564 GTTGTCTTAG
19597574 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
19597600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19597626 G
1 G
19597627 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19598334 original size:26 final size:26
Alignment explanation
Indices: 19598294--19598347 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
19598284 TGGGTTAACT
19598294 TAGGCATACAGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
*
19598320 TAGGCATAC-GAAGTTCATTCCCAGTC
1 TAGGCATACAG-AGTTCATCCCCAGTC
19598346 TA
1 TA
19598348 AGATCAGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:19598532 original size:26 final size:26
Alignment explanation
Indices: 19598483--19598533 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19598473 TGGCTTAGGT
*
19598483 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATGCCTAAGC
19598509 ATACGGAGTTCATTCCCA-GCCTAAG
1 ATACGGAGTTCATT-CCATGCCTAAG
19598534 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGCCTAAGC
Found at i:19599259 original size:26 final size:26
Alignment explanation
Indices: 19599229--19599281 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19599219 GTTGACTTAG
*
19599229 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
19599255 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19599281 G
1 G
19599282 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19599549 original size:158 final size:158
Alignment explanation
Indices: 19599333--19599755 Score: 458
Period size: 158 Copynumber: 2.7 Consensus size: 158
19599323 CACAAGGGGG
* * * * *
19599333 ACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCTG-CCGGCTGAGTGCCCCCACGCCCATT
1 ACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC-GACTGGCTGAGTGCCCGCACGCTCATT
* * * * * * *
19599397 TTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTC-GGACCAAGGGTTG
65 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACC-AGACTGAACCAAAGGTTA
* * *
19599461 TGGCAACGGGA-CTGACAACATGCAGAGGGA
129 CGGCAACAGGATC-GACAACACGCAGAGGGA
* * * * * *
19599491 ATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCACCGACTGGCTCAGTGCCTGCACGCTCGTTT
1 ACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTGCCCGCACGCTCATTT
* ** * * *
19599556 CATCAGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCAGACTGAACCAAAGGTTAC
66 CGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACTGAACCAAAGGTTAC
* * * *
19599620 GGTAACAGGATCGACAGCACGCAGGGGGG
130 GGCAACAGGATCGACAACACGCAGAGGGA
* * *
19599649 ACCAGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCATTT
1 ACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTGCCCGCACGCTCATTT
* *
19599714 CGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGACTAAG
66 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
19599756 TATATGGAGT
Statistics
Matches: 213, Mismatches: 47, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
157 7 0.03
158 202 0.95
159 4 0.02
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (158 bp):
ACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTGCCCGCACGCTCATTT
CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACTGAACCAAAGGTTACG
GCAACAGGATCGACAACACGCAGAGGGA
Found at i:19600429 original size:159 final size:158
Alignment explanation
Indices: 19600188--19600636 Score: 490
Period size: 159 Copynumber: 2.8 Consensus size: 158
19600178 TTGCAGCAGT
* * * * * *
19600188 AGGATCGACAGTATGCAGGGGGGACCGAGTTGATCCCCGGCTTGCGTATTCTGCCTCTCCAGCCG
1 AGGACCGACAGCATGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCG
* * *
19600253 GCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* ** *
19600318 CCCTA-ACC-GAACCGAGTGTTGTGGCAGC
131 CCC-AGACCAG-ACCGAGGGTTACGACAGC
* * * * * **
19600346 GGGACCGACAGCATGCAGAGGGGGACCGAGTCGATCCTCGACTTGCGCATTATGCCTTTTCGGTT
1 AGGACCGACAGCATGCAG-GGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCC
* * * * * *
19600411 GGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCTTTCC-TAGTCTA
65 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTA
** *
19600475 AGATCAGACCAGACCGAGGGTTACGATAGC
129 AGCCCAGACCAGACCGAGGGTTACGACAGC
** * * * * *
19600505 AGGATTGACAACACGCAGGGGGGGACTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACC
1 AGGACCGACAGCATGCA-GGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCC
* *
19600570 GACTGAGCGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
19600635 GC
130 GC
19600637 ATACGGAGTT
Statistics
Matches: 233, Mismatches: 52, Indels: 11
0.79 0.18 0.04
Matches are distributed among these distances:
158 17 0.07
159 213 0.91
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGGACCGACAGCATGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCG
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCAGACCAGACCGAGGGTTACGACAGC
Found at i:19600645 original size:26 final size:26
Alignment explanation
Indices: 19600609--19600660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19600599 GTTGGCTTAG
19600609 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19600635 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19600661 AATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19601367 original size:26 final size:26
Alignment explanation
Indices: 19601331--19601383 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19601321 GTTAACTTAG
19601331 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
19601357 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19601383 G
1 G
19601384 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19607506 original size:26 final size:26
Alignment explanation
Indices: 19607470--19607522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19607460 GTTGGCTTAG
19607470 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
19607496 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
19607522 G
1 G
19607523 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19607637 original size:184 final size:184
Alignment explanation
Indices: 19607309--19607816 Score: 561
Period size: 184 Copynumber: 2.8 Consensus size: 184
19607299 TGGGTTGACT
* *
19607309 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATTG
* ** * * * * * * * *
19607374 ACAGCACACAGGGGAGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCAGTTGAGC
66 GCAGCATGCAGGGGGGACCGGGTCAATCCCCAGCTTACACATTCTACCTCTCCAGCCAGCTGAGC
* * * *
19607439 GCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTC
131 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTC
* * * * *
19607493 TAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGAACCGAGGGTTGCGCCAGCAGGATTG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATTG
* * * * *
19607558 GCAGCATGTAGGGGGGACCGGGTCAATCCCCAGCTTGCACATTCTGCCTTTCCAGCCGGCTGAGC
66 GCAGCATGCAGGGGGGACCGGGTCAATCCCCAGCTTACACATTCTACCTCTCCAGCCAGCTGAGC
* * * *
19607623 ACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTCCCCAGTC
131 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
* * * * * * *
19607677 TAAGTAAATGGAGTTCATTCCCAGTTTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACTC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATTG
* * * * * * *
19607742 GCAGCATGCAGCGGGGACTGGGTCGATTCTCGGCTTACACATTCTACCTCTCC-GACCAGTTGAG
66 GCAGCATGCAGGGGGGACCGGGTCAATCCCCAGCTTACACATTCTACCTCTCCAG-CCAGCTGAG
* *
19607806 CGCCTGCACGC
130 CACCCGCACGC
19607817 CCATTTTGTC
Statistics
Matches: 264, Mismatches: 58, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
183 1 0.00
184 260 0.98
185 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATTG
GCAGCATGCAGGGGGGACCGGGTCAATCCCCAGCTTACACATTCTACCTCTCCAGCCAGCTGAGC
ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
Found at i:19608040 original size:159 final size:159
Alignment explanation
Indices: 19607832--19608181 Score: 382
Period size: 159 Copynumber: 2.2 Consensus size: 159
19607822 TTGTCATTGG
** * ** * * * *
19607832 CTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGTAGC-GAA
1 CTTAGGCATACAGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTATGGCAGCAG-A
* * * * * *
19607895 ACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGC
64 ACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGAC
**
19607960 TCAACGCCCGCACACTCGTTTTGTGGGTTGA
129 TCAACGCCCGCACACTCGTTTAATGGGTTGA
* * *
19607991 CTTATGCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTATGGCATCAGGA
1 CTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGAA
** * * *
19608055 TTGACAGCATGCAGGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACT
65 CCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACT
* * * *
19608120 GAGCGCCCGCACACTCGTTTAATTGGTTGG
130 CAACGCCCGCACACTCGTTTAATGGGTTGA
*
19608150 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACAGAGTTCATTCCATGTCTAAG
19608182 CATACGGAGT
Statistics
Matches: 156, Mismatches: 31, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
158 6 0.04
159 147 0.94
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGAAC
CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTC
AACGCCCGCACACTCGTTTAATGGGTTGA
Found at i:19608191 original size:26 final size:26
Alignment explanation
Indices: 19608155--19608207 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19608145 GTTGGCTTAG
19608155 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19608181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19608207 G
1 G
19608208 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19608907 original size:26 final size:26
Alignment explanation
Indices: 19608861--19608913 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19608851 GTTGACTTAG
* *
19608861 GCATATGGAGTTCATCTCTAGTCTAA
1 GCATACGGAGTTCATCTCTAGTATAA
19608887 GCATACGGAGTTCAT-TCCTAGTATAA
1 GCATACGGAGTTCATCT-CTAGTATAA
19608913 G
1 G
19608914 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCTAGTATAA
Found at i:19609753 original size:171 final size:171
Alignment explanation
Indices: 19609426--19609820 Score: 497
Period size: 171 Copynumber: 2.3 Consensus size: 171
19609416 CAGACCAGAT
* *
19609426 CGAGGGTTGTGGCAGCAGGACCAGCAACAGGATCGACAGCACGTAG-GGGGGACCGGACCGATCC
1 CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGTAGAGGGGGACCGGACCGATCC
* * * * * * **
19609490 CCGGCATGCGCATTCTGCCTCTTCGATTGGCTGAGCGCCTGCATGCTCATTTTGTGGGTTGGCTT
66 CCGGCATGCACATTCTACCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTT
* **
19609555 AGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
131 AGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGAC
* ** **
19609596 CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGGCAGCACGTAGAGGGGGGTCGGGTCGATCC
1 CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGTAGAGGGGGACCGGACCGATCC
** * * *
19609661 TTGGCTTGCACATTCTACCT-TCTCGATCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCT
66 CCGGCATGCACATTCTACCTCT-TCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCT
**
19609725 TAGGCATATTGAGTACATTCCATGTCTAAGCCCCAACCGGAC
130 TAGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGAC
* * * * *
19609767 CGAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCAACAGCATGCAGAGGGGGAC
1 CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGTAGAGGGGGAC
19609821 TGGGATGATC
Statistics
Matches: 190, Mismatches: 33, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
170 44 0.23
171 146 0.77
ACGTcount: A:0.20, C:0.27, G:0.33, T:0.21
Consensus pattern (171 bp):
CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGTAGAGGGGGACCGGACCGATCC
CCGGCATGCACATTCTACCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTT
AGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGAC
Found at i:19609920 original size:26 final size:26
Alignment explanation
Indices: 19609890--19609942 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19609880 GTTGACTTAG
* *
19609890 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19609916 GCATATGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19609942 G
1 G
19609943 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19610381 original size:158 final size:158
Alignment explanation
Indices: 19609916--19610417 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 158
19609906 CCTAGTCTAA
* * * * **
19609916 GCATAT-GAAGTTCATTCCCATTCTAAGATCGGATCAGACCGAGGGTTACGGTAGTAGGATCGGT
1 GCATATGGAA-TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGAC
* * * *
19609980 AGCACGCAGAGGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGTGC
65 AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
* * * *
19610045 CCGTACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * ** * ** *
19610074 GCATAGGGAGTTCATTCCAAATCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCAGGACCGAC
1 GCATATGGAATTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGAC
* *** * *
19610138 AGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGTAGGCTCAGCA
65 AGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
* * **
19610203 CCCGC-CAGCTCATTTTGTGGGTTGACTTTT
129 CCCGCAC-GCTCATTTCGTGGGTTGGCTTAG
* * * *
19610233 GCATATGGAATTCATTCCCAGTCTAAGATTAGACCAAACCAAGGGTTACGGCAGCAGGATCGACA
1 GCATATGGAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
* * * * * * *
19610298 ACACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTTTTCGACCGACTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
19610363 CGCACGCTCATTTCGTGGGTTGGCTTAG
131 CGCACGCTCATTTCGTGGGTTGGCTTAG
*
19610391 GCATATGGAGTTCATT-CCATGTCTAAG
1 GCATATGGAATTCATTCCCA-GTCTAAG
19610418 CATACGGAGT
Statistics
Matches: 272, Mismatches: 65, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 145 0.53
159 124 0.46
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATATGGAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:19610427 original size:26 final size:26
Alignment explanation
Indices: 19610391--19610443 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19610381 GTTGGCTTAG
*
19610391 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19610417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19610443 G
1 G
19610444 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19611150 original size:26 final size:26
Alignment explanation
Indices: 19611113--19611165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19611103 GTTGACTTAG
19611113 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
19611139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19611165 G
1 G
19611166 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19611486 original size:26 final size:26
Alignment explanation
Indices: 19611456--19611508 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19611446 GTTGGCTTAG
*
19611456 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
19611482 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19611508 G
1 G
19611509 ATCGGGCCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19611757 original size:196 final size:197
Alignment explanation
Indices: 19611353--19612267 Score: 910
Period size: 196 Copynumber: 4.7 Consensus size: 197
19611343 TGTGGCAGCG
* * * * * * * * * *
19611353 GGATCGACAGCACACAGAGGGGGACCGGGCCAATCCCCTGCTTACTCATTATGCCTCTCCAG-TT
1 GGATCGACAGCACGCAG-GGGGGATCAGACCAATCCCCGGCTTACGCATTCTGCCTCTTCGGATC
* *** *
19611417 GGCTCAATGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * *
19611482 GCATACAGAGTTCATTCCCAGTCTAAGATCGGGCCGAACTGAGGGTTGCGATAGCAGGACTAGTA
130 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGATAGCAAGACCAGTA
*
19611547 GAA
195 GTA
* * ** ** * *
19611550 GGATAGACAGCACGTAGGGGGGATCAGACCGGTCTTCGGCTTACGTATTCTGCCTCTTCGGCT-G
1 GGATCGACAGCACGCAGGGGGGATCAGACCAATCCCCGGCTTACGCATTCTGCCTCTTCGGATCG
* * * *
19611614 GCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAG
66 GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * **
19611679 CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATTAAGGGTTGCGGTAGCAAGACCAACAG
131 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGATAGCAAGACCAGTAG
*
19611744 CA
196 TA
* ** * * * * * *
19611746 GGATCGACAGCACGCAGGGGGGATCGGGTCATTCCCCAGCTTACACGTTCTACCTCTT-TGATCG
1 GGATCGACAGCACGCAGGGGGGATCAGACCAATCCCCGGCTTACGCATTCTGCCTCTTCGGATCG
* ** * * * *
19611810 GCCGAGTGCCCGTACGCTCGTTTCATGGGTAGGCTTGGGCATACGGAGTTTATTCCATGTCTAAG
66 GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * ** * *
19611875 CAGACAGAGTTCATTTCCAGTCTAAGATCAGATTGGA-TCGAGGGTTGCGATAGTAAGACCAGTA
131 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-AAGGGTTGCGATAGCAAGACCAGTA
19611939 GTA
195 GTA
* * * * * * *
19611942 GGATCGACAGCACGCAGGGGGGGACCAGGCCAATCACCGGCTTATGTACTCTGCCTCTCCGG-TC
1 GGATCGACAGCACGCA-GGGGGGATCAGACCAATCCCCGGCTTACGCATTCTGCCTCTTCGGATC
* * *
19612006 GGCTGAGCACCCGCACTCTTGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * ** **
19612071 GCATACGGAGTTCAATCTCAGTCTAAGATCGGACCGGACTAAGGGTTATGGCAGC-AGCACCAGT
130 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGATAGCAAG-ACCAGT
19612135 AGTA
194 AGTA
* * ** * * *
19612139 GGATCGATAGCACGCAGAGGGGATCAGACTGATCCCCGACTTGCGCATTCTGCCTC-TCCGATCG
1 GGATCGACAGCACGCAGGGGGGATCAGACCAATCCCCGGCTTACGCATTCTGCCTCTTCGGATCG
* * * *
19612203 ACTGAGCGCCCACACGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
19612267 C
131 C
19612268 CCCAGCCGGA
Statistics
Matches: 576, Mismatches: 134, Indels: 18
0.79 0.18 0.02
Matches are distributed among these distances:
195 43 0.07
196 366 0.64
197 165 0.29
198 2 0.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (197 bp):
GGATCGACAGCACGCAGGGGGGATCAGACCAATCCCCGGCTTACGCATTCTGCCTCTTCGGATCG
GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGATAGCAAGACCAGTAG
TA
Found at i:19612075 original size:26 final size:26
Alignment explanation
Indices: 19612045--19612097 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19612035 GTTAGCTTAG
*
19612045 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCAATCTCA-GTCTAA
19612071 GCATACGGAGTTCAATCTCAGTCTAA
1 GCATACGGAGTTCAATCTCAGTCTAA
19612097 G
1 G
19612098 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCTCAGTCTAA
Found at i:19612108 original size:393 final size:392
Alignment explanation
Indices: 19611424--19612267 Score: 1045
Period size: 393 Copynumber: 2.2 Consensus size: 392
19611414 GTTGGCTCAA
*
19611424 TGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
1 TGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACA
* * *
19611489 GAGTTCATTCCCAGTCTAAGATCGGGCCGAACTGAGGGTTGCGATAGCAGGACTAGTAGAAGGAT
66 GAGTTCATTCCCAGTCTAAGATCGAGCCGAACTGAGGGTTGCGATAGCAAGACCAGTAGAAGGAT
* * ** ** * *
19611554 AGACAGCACGTAGGGGGGATCAGACCGGTCTTCGGCTTACGTATTCTGCCTCTTCGGCTGGCTGA
131 AGACAGCACGCAGGGGGGACCAGACCAATCACCGGCTTACGTACTCTGCCTCTCCGGCTGGCTGA
* * *
19611619 GCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCATAC
196 GCACCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAC
* * * *
19611684 GGAGTTCATTCCCAATCTAAGATCAGACCGGATTAAGGGTTGCGGTAGCAAG-ACCAACAGCAGG
261 GGAGTTCAATCCCAATCTAAGATCAGACCGGACTAAGGGTTACGGCAGC-AGCACCAACAGCAGG
* ** * ** *
19611748 ATCGACAGCACGCAGGGGGGATC-GGGTCATTCCCC-AGCTTACACGTTCTACCTCTTTGATCGG
325 ATCGACAGCACGCAGAGGGGATCAGACTCA-TCCCCGA-CTTACACATTCTACCTCTCCGATCGA
19611811 CCGAG
388 CCGAG
* * * *
19611816 TGCCCGTACGCTCGTTTCATGGGTAGGCTTGGGCATACGGAGTTTATTCCATGTCTAAGCAGACA
1 TGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACA
* *** * * *
19611881 GAGTTCATTTCCAGTCTAAGATCAGATTGGATC-GAGGGTTGCGATAGTAAGACCAGTAGTAGGA
66 GAGTTCATTCCCAGTCTAAGATC-GAGCCGAACTGAGGGTTGCGATAGCAAGACCAGTAGAAGGA
* * *
19611945 TCGACAGCACGCAGGGGGGGACCAGGCCAATCACCGGCTTATGTACTCTGCCTCTCCGG-TCGGC
130 TAGACAGCACGCA-GGGGGGACCAGACCAATCACCGGCTTACGTACTCTGCCTCTCCGGCT-GGC
* ** *
19612009 TGAGCACCCGCACTCTTGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
193 TGAGCACCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
* * * * ** *
19612074 TACGGAGTTCAATCTCAGTCTAAGATCGGACCGGACTAAGGGTTATGGCAGCAGCACCAGTAGTA
258 TACGGAGTTCAATCCCAATCTAAGATCAGACCGGACTAAGGGTTACGGCAGCAGCACCAACAGCA
* * * * *
19612139 GGATCGATAGCACGCAGAGGGGATCAGACTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGA
323 GGATCGACAGCACGCAGAGGGGATCAGACTCATCCCCGACTTACACATTCTACCTCTCCGATCGA
*
19612204 CTGAG
388 CCGAG
* *
19612209 CGCCC-ACACGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TGCCCGA-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
19612268 CCCAGCCGGA
Statistics
Matches: 382, Mismatches: 63, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
392 159 0.42
393 219 0.57
394 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (392 bp):
TGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACA
GAGTTCATTCCCAGTCTAAGATCGAGCCGAACTGAGGGTTGCGATAGCAAGACCAGTAGAAGGAT
AGACAGCACGCAGGGGGGACCAGACCAATCACCGGCTTACGTACTCTGCCTCTCCGGCTGGCTGA
GCACCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAC
GGAGTTCAATCCCAATCTAAGATCAGACCGGACTAAGGGTTACGGCAGCAGCACCAACAGCAGGA
TCGACAGCACGCAGAGGGGATCAGACTCATCCCCGACTTACACATTCTACCTCTCCGATCGACCG
AG
Found at i:19612469 original size:27 final size:26
Alignment explanation
Indices: 19612424--19612475 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
19612414 TGACTTAGGC
19612424 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
19612450 ATACGGAGTTTCATTCCCAGTCTAAG
1 ATACGGAG-TTCATCCCCAGTCTAAG
19612476 ATTCAGACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:19612961 original size:26 final size:26
Alignment explanation
Indices: 19612922--19612972 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19612912 TGGCTTAGGT
19612922 ATACGGAAGTTCATTCCATGTCTAAGC
1 ATACGGAAGTTCATTCCA-GTCTAAGC
19612949 ATACGG-AGTTCATTCCAGTCTAAG
1 ATACGGAAGTTCATTCCAGTCTAAG
19612973 ATCAGACAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 7 0.29
26 11 0.46
27 6 0.25
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAAGTTCATTCCAGTCTAAGC
Found at i:19613007 original size:182 final size:181
Alignment explanation
Indices: 19612763--19613127 Score: 488
Period size: 182 Copynumber: 2.0 Consensus size: 181
19612753 GTTGACATAG
* *
19612763 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACTGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACA
* * ** *
19612828 GCACGCAGTGGGGATC-GATCGCG-TCCTCGGCTTACACATTCTGCCTCTCCGATTGGCTGAGTG
66 GCACGCAG-GGGGATCAG-GCCCGATCC-CGGCTTACACATTCTGCCTC-CCGATCAGCTGAGAG
* *
19612891 CCCGCACGCTCATTT-GTGGGTTGGCTTAGGTATACGGAAGTTCATTCCATGTCTAA
127 -CCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAA
* **
19612947 GCATACGGAGTTCATT-CCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACA
* * *
19613010 GCACGCAGGGGGATCAGGCCCGATCCCGGCTTGCGCATTCTGCCTCCCGGTCAGCTGAGAGCCAC
66 GCACGCAGGGGGATCAGGCCCGATCCCGGCTTACACATTCTGCCTCCCGATCAGCTGAGAGCCAC
**
19613075 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
19613126 GC
1 GC
19613128 CCTAGCAGGA
Statistics
Matches: 161, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
179 31 0.19
180 32 0.20
181 28 0.17
182 38 0.24
183 16 0.10
184 16 0.10
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (181 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACA
GCACGCAGGGGGATCAGGCCCGATCCCGGCTTACACATTCTGCCTCCCGATCAGCTGAGAGCCAC
ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:19614858 original size:26 final size:26
Alignment explanation
Indices: 19614829--19614881 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19614819 GTTGGCTTAG
19614829 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19614855 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19614881 G
1 G
19614882 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19615571 original size:26 final size:26
Alignment explanation
Indices: 19615535--19615587 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19615525 GTTGACTTAG
*
19615535 GCATATGGAGTTCA-TCTCTAGTCTAA
1 GCATACGGAGTTCATTC-CTAGTCTAA
19615561 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19615587 G
1 G
19615588 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19616427 original size:171 final size:171
Alignment explanation
Indices: 19616101--19616495 Score: 506
Period size: 171 Copynumber: 2.3 Consensus size: 171
19616091 CAGACCAGAT
* *
19616101 CGAGGGTTGTGGCAGCAGGACCAGCAACAGGATCGACAGCACGTAG-GGGGGACCGGACCGATCC
1 CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGTAGAGGGGGACCGGACCGATCC
* * * * * * **
19616165 CCGGCATGCGCATTCTGCCTCTTCGATTGGCTGAGCGCCTGCATGCTCATTTTGTGGGTTGGCTT
66 CCGGCATGCACATTCTACCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTT
* **
19616230 AGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
131 AGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGAC
* ** **
19616271 CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGGCAGCACGTAGAGGGGGGTCGGGTCGATCC
1 CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGTAGAGGGGGACCGGACCGATCC
** * * *
19616336 TTGGCTTGCACATTCTACCT-TCTCGATCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCT
66 CCGGCATGCACATTCTACCTCT-TCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCT
*
19616400 TAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACCGGAC
130 TAGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGAC
* * * * *
19616442 CGAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCAACAGCATGCAGAGGGGGAC
1 CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGTAGAGGGGGAC
19616496 TGGGATGATC
Statistics
Matches: 191, Mismatches: 32, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
170 44 0.23
171 147 0.77
ACGTcount: A:0.20, C:0.27, G:0.33, T:0.20
Consensus pattern (171 bp):
CGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGTAGAGGGGGACCGGACCGATCC
CCGGCATGCACATTCTACCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTT
AGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGAC
Found at i:19616595 original size:26 final size:26
Alignment explanation
Indices: 19616565--19616617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19616555 GTTGACTTAG
* *
19616565 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19616591 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19616617 G
1 G
19616618 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19617056 original size:158 final size:158
Alignment explanation
Indices: 19616599--19617092 Score: 535
Period size: 158 Copynumber: 3.1 Consensus size: 158
19616589 AAGCATACGA
* * * **
19616599 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGTAGTAGGATCGGTAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
* * * * * *
19616664 AGGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTTCGATCGGCTGAGTGCCCGTACGCC
66 GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
* * *
19616729 CGTTTCATGGGTTGGCTTAGGCATAGGG
131 CATTTCGTGGGTTGGCTTAGGCATATGG
* * ** * ** *
19616757 AGTTCATTCCAAATCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGCA
1 AGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCA
* * * * *
19616821 GAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGTAGGCTCAGCACCCGC-CA
65 G-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCAC-
* * **
19616885 GCTCATTTTGTGGGTTGACTTTTGCATATGG
128 GCTCATTTCGTGGGTTGGCTTAGGCATATGG
* * * * * * *
19616916 AATTCATTCCCAGTCTAAGATTAGACCAAACCAAGGGTTACGGCAGCAGGATCGACAACACACAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
* * * * * *
19616981 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTTTTCGACCGACTGAGCGCCCGCACGCT
66 GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
19617046 CATTTCGTGGGTTGGCTTAGGCATATGG
131 CATTTCGTGGGTTGGCTTAGGCATATGG
19617074 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
19617093 CATACGGAGT
Statistics
Matches: 268, Mismatches: 62, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.01
158 142 0.53
159 123 0.46
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATATGG
Found at i:19617102 original size:26 final size:26
Alignment explanation
Indices: 19617066--19617118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19617056 GTTGGCTTAG
*
19617066 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19617092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19617118 G
1 G
19617119 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19617825 original size:26 final size:26
Alignment explanation
Indices: 19617788--19617840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19617778 GTTGACTTAG
19617788 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
19617814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19617840 G
1 G
19617841 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19618340 original size:26 final size:26
Alignment explanation
Indices: 19618304--19618354 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19618294 TAACTTAGGC
19618304 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
19618330 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
19618355 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:19618840 original size:26 final size:26
Alignment explanation
Indices: 19618804--19618854 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19618794 TGGCTTAGGT
19618804 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
19618830 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19618855 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19618877 original size:500 final size:499
Alignment explanation
Indices: 19617736--19620689 Score: 2019
Period size: 500 Copynumber: 5.6 Consensus size: 499
19617726 TTACGCATCT
* * * *
19617736 TGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCCTGGGTTGACTTAGGCATACGAAGTTC
1 TGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
19617801 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGAC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAC
* * * * * * *
19617866 AGCAGGATCAAAAGCACGCAGAGGGGACCGGGTCTATCCCCGGCTTGCGCATTCTGCCTCTCCAG
131 ACCAGGATCGACAGCACGCAG-GGGGATCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAG
* ** * * * * *
19617931 CCGATTGAGCACCCGTAAGGCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
195 TCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * ** * * * * *
19617996 AAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGA-TCGACAGCACACAGAGGGGGACCGGGCCA
260 AAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGACT-GGTAGCACGCAGAGAGGGACCGAGTCG
* * * * * * **
19618060 ATCCCCTG-CTTAC-TCATTATGCCTCTCCAGTTGGCTCAATGCCCGAACGCTCGTTTCATGGGT
324 AT-CCTTGACTTACGT-ATTATGCCTCTTCGGTCGGCTCAGTGCCCAAACGCTCGTTTTGTGGGT
* * ** *
19618123 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCTAG--CAGGATCGAGGGTTGTGGCAG
387 TGACATAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCA-GATCAAGGG-T-T----G
* * * * * * * *
19618185 CAGGACCTGCAGCGGGATCGACAACACGTAGAGGGGGACCGGACTGATCCTCGGCTTTCGCATTA
443 CA--A-CTGCA---GGATCGATAGCACGCAG-GGGGGATCGGTC-GATCCTCGGCTTACACATTC
* ** * * * ** *
19618250 TGCCTCTTCGGCCGACTGAACGCCCGCATGCTCATTTTATGGGTTAACTTAGGCATACGGAGTTC
1 TGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
19618315 ATCCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAC
* * * * *
19618380 ACCAGGATCGACAGCATGCAGGGAGGATCGGGCCAATCCCCGACTTGTGCATTCTGCCTATCCAG
131 ACCAGGATCGACAGCACGCAGGG-GGATCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAG
*
19618445 TCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC-
195 TCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
19618509 AAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGACTGGTAGCACGCAGAGAGGGACCGAGTCGA
260 AAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGACTGGTAGCACGCAGAGAGGGACCGAGTCGA
* *
19618574 TCCTTGACTTACGTATTATGCCTCTTCGGTCGGCTCAGTGCCCAAACGATCATTTTGTGGGTTGA
325 TCCTTGACTTACGTATTATGCCTCTTCGGTCGGCTCAGTGCCCAAACGCTCGTTTTGTGGGTTGA
*
19618639 CATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACTGCAGGAT
390 CATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAACTGCAGGAT
* *
19618704 CGATAGCACGCAGTGGGGATCGAGTCGGTCCTCGGCTTACACATTC
455 CGATAGCACGCAGGGGGGATCG-GTCGATCCTCGGCTTACACATTC
* * * * *
19618750 TGCCTCTCCGATTGGCTGAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGTATACGGAGTTC
1 TGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
19618815 AT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGG
66 ATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
* * *
19618879 CAGCAGGATCGACAGCACGCAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
130 CACCAGGATCGACAGCACGCAGGGGGATCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAG
* * ***
19618944 TCAGCTGAG-AGCCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
195 TCGGCTGAGCA-CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * ** * * ** *
19619008 TAAG-CATA-CAGAGTTCATTCCCAGTCTAAGATCGGGCCGAACTGAGGGTTGCGATAGCAGGAC
259 TAAGCCCTAGCCG-G---A--CCGAGGGT-TG-T--GG-C--AGTG-GGACTG-G-TAGCACG-C
* * *
19619071 TAGTAGAAGGATAGACAGCACGTAGGGGGGATCAGACCGGTCTTCGGCTTACGTATTCTGCCTCT
307 -AG-AG-AGG---G--A-C-CG-A-----G-TC-GATC---CTT-GACTTACGTATTATGCCTCT
* ** ** *
19619136 TCGG-CTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCCA
350 TCGGTC-GGCTCAGTGCCCAAACGCTCGTTT--T--G-TGGGTT--G---AC-------A-T--A
* * * **
19619200 TGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATTAAGGGTTGC-GGTAGCAA
394 -G-----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAACT-GC-A
* * * * *
19619264 GACCAACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTC-ATTCCCCAGCTTACACGTTC
451 G--GATC-G----AT----AGCACGCAGGGGGGATC-GGTCGA-TCCTCGGCTTACACATTC
* ** * * * * * * * *
19619325 TACCTCTTTGATCGGCCGAGCGCCCGTACGCTCGTTTCATGGGTAGGCTTGGGCATACGGAGTTT
1 TGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *** *
19619390 AT-TCCATGTCTAAGCAGACAGAGTTCATTTCCAGTCTAAGATCAGATTGGATCGAGGGTTGCGA
66 ATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC--
* * ** **
19619454 TAGTAAGACCAGTAGTAGGATCGACAGCACGCAGGGGGGGACCAGGCCAATCATCGGCTTATGCA
128 --G--ACACC------AGGATCGACAGCACGCA--GGGGGATCAGGCCAATCCCCGGCTTGCGCA
* * * *** *
19619519 CTCTGCCTCTCCGGTCGGCTGAGCACCCGCACTCTTGTTTCATGGGTTAGCTTAGGCATACGGAG
181 TTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAG
*
19619584 TTCATTCCATGTCTAAGCATACGGAGTTCAATCTCAGTCTAAGATCGGACCGGACTAAGGGTTAT
246 TTCATTCCATGTCTAAG----C------C---CT-AG-C------CGGACC-G----AGGGTTGT
** * * * * * * * ** *
19619649 GGCAGCAGCACCAGCAGTAGGATCG-ATAGCACGCAGA-GGGGATCAGACTGATCCCCGACTTGC
285 GGCAGTGGGA-CTG--GTAGCA-CGCAGAG-A-G-GGACCGAG-TC-----GATCCTTGACTTAC
* * * * * * * * * * *
19619712 GCATTCTGCCTCTCCGATCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
337 GTATTATGCCTCTTCGGTCGGCTCAGTGCCCAAACGCTCGTTTTGTGGGTTGACATAGGCATACG
** * *
19619777 GAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGCAAGACTGGCAGTGGG
402 GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCAAGGG-T-T----GC-A-ACT-GCA---GG
* ** *** * * *
19619840 ATCGTTAGCACAAAAAAAGGGATCGGGCTGATCCTCGGCTTACGCATTA
453 ATCGATAGCAC-GCAGGGGGGATCGGTC-GATCCTCGGCTTACACATTC
* *
19619889 TGCCTCTCCGATCGGCCTTCCGGTAGGTTAAGTGCCCGCACGTTCATTTCGTGGGTTGACTTAGG
1 TGCCTCTCCGATCGG-----C--T--G---AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
*
19619954 CATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
54 CATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * *
19620019 GAGGGTTGCGACACCAGGATCGACAGCATGCAGGGAGGATCGGGCCAATCCCCGACTTGTGCATT
119 GAGGGTTGCGACACCAGGATCGACAGCACGCAGGG-GGATCAGGCCAATCCCCGGCTTGCGCATT
* *
19620084 CTGCCTATCCAGTCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
183 CTGCCTCTCCAGTCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTT
19620149 CATTCCATGTC-AAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGACTGGTAGCACGCAGAGAG
248 CATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGACTGGTAGCACGCAGAGAG
*
19620213 GGACCGAGTCGATCCTTGACTTACGTATTATGCCTCTTCGGTCGGCTCAGTGCCCAAACGCTCAT
313 GGACCGAGTCGATCCTTGACTTACGTATTATGCCTCTTCGGTCGGCTCAGTGCCCAAACGCTCGT
*
19620278 TTTGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTG
378 TTTGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTG
* * *
19620343 CAACTGCAGGATCGATAGCACGCAGTGGGGATCGAGCCGGTCCTCGGCTTACACATTC
443 CAACTGCAGGATCGATAGCACGCAGGGGGGATCG-GTCGATCCTCGGCTTACACATTC
* * * * *
19620401 TGCCTCTCCGATTGGCTGAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGTATACGGAGTTC
1 TGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
19620466 AT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGG
66 ATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
* * * *
19620530 CAGCAGGATCGACAGCACGCAGGGGGATCAGGCCGATTCCCGGCTTGCGCATTCTGCCTCTCCGG
130 CACCAGGATCGACAGCACGCAGGGGGATCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAG
* * ***
19620595 TCAGCTGAG-AGCCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
195 TCGGCTGAGCA-CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* *
19620659 TAAGCCCTAGCAGGATCGAGGGTTGTGGCAG
259 TAAGCCCTAGCCGGACCGAGGGTTGTGGCAG
19620690 CAGGACCTGC
Statistics
Matches: 1925, Mismatches: 331, Indels: 382
0.73 0.13 0.14
Matches are distributed among these distances:
498 4 0.00
499 191 0.10
500 305 0.16
501 16 0.01
502 1 0.00
503 1 0.00
504 10 0.01
505 3 0.00
506 1 0.00
507 4 0.00
508 2 0.00
509 1 0.00
511 4 0.00
512 50 0.03
513 151 0.08
514 239 0.12
515 1 0.00
516 5 0.00
517 5 0.00
518 4 0.00
519 2 0.00
521 1 0.00
523 2 0.00
524 5 0.00
525 91 0.05
526 4 0.00
530 4 0.00
531 4 0.00
532 5 0.00
533 11 0.01
535 2 0.00
536 18 0.01
537 39 0.02
539 1 0.00
540 1 0.00
541 7 0.00
542 5 0.00
544 1 0.00
547 3 0.00
548 2 0.00
549 2 0.00
552 1 0.00
554 1 0.00
555 1 0.00
557 1 0.00
558 2 0.00
562 10 0.01
563 177 0.09
564 54 0.03
565 2 0.00
566 2 0.00
567 2 0.00
568 1 0.00
569 4 0.00
570 4 0.00
571 5 0.00
572 6 0.00
573 1 0.00
574 1 0.00
575 141 0.07
576 88 0.05
577 3 0.00
579 2 0.00
581 2 0.00
582 1 0.00
584 5 0.00
585 1 0.00
587 17 0.01
589 143 0.07
590 3 0.00
593 3 0.00
595 1 0.00
598 1 0.00
600 2 0.00
601 3 0.00
602 2 0.00
603 2 0.00
604 7 0.00
605 2 0.00
606 4 0.00
607 2 0.00
608 1 0.00
609 1 0.00
611 4 0.00
612 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (499 bp):
TGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAC
ACCAGGATCGACAGCACGCAGGGGGATCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGT
CGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGACTGGTAGCACGCAGAGAGGGACCGAGTCGAT
CCTTGACTTACGTATTATGCCTCTTCGGTCGGCTCAGTGCCCAAACGCTCGTTTTGTGGGTTGAC
ATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAACTGCAGGATC
GATAGCACGCAGGGGGGATCGGTCGATCCTCGGCTTACACATTC
Found at i:19619015 original size:26 final size:26
Alignment explanation
Indices: 19618985--19619037 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19618975 GTTGGCTTAG
*
19618985 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
19619011 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19619037 G
1 G
19619038 ATCGGGCCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19619234 original size:196 final size:196
Alignment explanation
Indices: 19618878--19619797 Score: 1015
Period size: 196 Copynumber: 4.7 Consensus size: 196
19618868 GAGGGTTGCG
* * *
19618878 GCAGCAGGATCGACAGCACGCA-GGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 GCAGTAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC
* * *
19618942 GGTCAGCTGAG-AGCCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 GGTCGGCTGAGCA-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * * *
19619006 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGGCCGAACTGAGGGTTGCGATAGCAGGAC
130 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGATAGCAAGAC
*
19619071 TA
195 CA
* * * * * * ** *
19619073 GTAGAAGGATAGACAGCACGTAGGGGGGATCAGACCGGTCTTCGGCTTACGTATTCTGCCTCTTC
1 GCAGTAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC
* * *
19619138 GG-CTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATG
66 GGTC-GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * *
19619202 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATTAAGGGTTGCGGTAGCAAGAC
130 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGATAGCAAGAC
19619267 CA
195 CA
* * * * * * * *
19619269 ACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTC-ATTCCCCAGCTTACACGTTCTACCTCTT
1 GCAGTAGGATCGACAGCACGCAGGGGGGATCAGGCCGA-TCCCCGGCTTACGCATTCTGCCTCTT
* * * * * * * *
19619333 TGATCGGCCGAGCGCCCGTACGCTCGTTTCATGGGTAGGCTTGGGCATACGGAGTTTATTCCATG
65 CGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * ** * *
19619398 TCTAAGCAGACAGAGTTCATTTCCAGTCTAAGATCAGATTGGA-TCGAGGGTTGCGATAGTAAGA
130 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-AAGGGTTGCGATAGCAAGA
19619462 CCA
194 CCA
* * * ** * * *
19619465 GTAGTAGGATCGACAGCACGCAGGGGGGGACCAGGCCAATCATCGGCTTATGCACTCTGCCTCTC
1 GCAGTAGGATCGACAGCACGCA-GGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTT
* * *
19619530 CGGTCGGCTGAGCACCCGCACTCTTGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATG
65 CGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * * ** **
19619595 TCTAAGCATACGGAGTTCAATCTCAGTCTAAGATCGGACCGGACTAAGGGTTATGGCAGC-AGCA
130 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGATAGCAAG-A
19619659 CCA
194 CCA
* * * * * * *
19619662 GCAGTAGGATCGATAGCACGCAGAGGGGATCAGACTGATCCCCGACTTGCGCATTCTGCCTCTCC
1 GCAGTAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC
* * * * *
19619727 GATCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
19619792 CTAAGC
131 CTAAGC
19619798 CCCAGCCGGA
Statistics
Matches: 593, Mismatches: 122, Indels: 19
0.81 0.17 0.03
Matches are distributed among these distances:
195 20 0.03
196 419 0.71
197 152 0.26
198 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (196 bp):
GCAGTAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC
GGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGATAGCAAGACC
A
Found at i:19619604 original size:26 final size:26
Alignment explanation
Indices: 19619574--19619626 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19619564 GTTAGCTTAG
*
19619574 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCAATCTCA-GTCTAA
19619600 GCATACGGAGTTCAATCTCAGTCTAA
1 GCATACGGAGTTCAATCTCAGTCTAA
19619626 G
1 G
19619627 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCTCAGTCTAA
Found at i:19619646 original size:393 final size:387
Alignment explanation
Indices: 19618735--19619797 Score: 1241
Period size: 393 Copynumber: 2.7 Consensus size: 387
19618725 GAGTCGGTCC
* * * * ** * *
19618735 TCGGCTTACACATTCTGCCTCTCCGATTGGCTGAGTGCCCGCACGCTCATTTTGTGGGTTGGCTT
1 TCGGCTTACGCACTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTT
* **
19618800 AGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG
66 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** * *
19618865 ACCGAGGGTTGC---G--G----CAGCAGGATCGACAGCACGCA-GGGGGATCAGGCCGATCCCC
131 ACTAAGGGTTGCGGAGCAGACCACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTC-ATCCCC
* * * *
19618920 GGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGAGCCCACACGCTTGTTTCATGGGTTGGCTTAG
195 -GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAG
* *
19618985 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGGCCGAAC
259 GCATACGGAGTTCATTCCATGTCTAAGCAGACAGAGTTCATTCCCAGTCTAAGATCGAGCCGAAC
* * * * ** *
19619050 TGAGGGTTGCGATAGCAGGACTAGTAGAAGGATAGACAGCACGTAGGGGGGATCAGACCGGTCT
324 TGAGGGTTGCGATAGCAAGACCAGTAGAAGGATAGACAGCACGCAGGGGGGACCAGACCAATCA
* * *
19619114 TCGGCTTACGTATTCTGCCTCTTCGG-CTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCT
1 TCGGCTTACGCACTCTGCCTCTCCGGTC-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCT
* * *
19619178 TAGGCATACAGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCG
65 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
*
19619243 GATTAAGGGTTGCGGTAGCAAGACCAACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCATT
130 GACTAAGGGTTGCGG-AGC-AGACC-ACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCA-T
* * * * ** * ** *
19619308 CCCCAGCTTACACGTTCTACCTCTTTGATCGGCCGAGCGCCCGTACGCTCGTTTCATGGGTAGGC
191 CCCC-GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGC
* * * **
19619373 TTGGGCATACGGAGTTTATTCCATGTCTAAGCAGACAGAGTTCATTTCCAGTCTAAGATCAGATT
255 TTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACAGAGTTCATTCCCAGTCTAAGATC-GAGC
* * * * * *
19619438 GGATC-GAGGGTTGCGATAGTAAGACCAGTAGTAGGATCGACAGCACGCAGGGGGGGACCAGGCC
319 CGAACTGAGGGTTGCGATAGCAAGACCAGTAGAAGGATAGACAGCACGCA-GGGGGGACCAGACC
19619502 AATCA
383 AATCA
* * * * *
19619507 TCGGCTTATGCACTCTGCCTCTCCGGTCGGCTGAGCACCCGCACTCTTGTTTCATGGGTTAGCTT
1 TCGGCTTACGCACTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTT
* * *
19619572 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCTCAGTCTAAGATCGGACCGG
66 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** * * * ** *
19619637 ACTAAGGGTTATGGCAGCAGCACCAGCAGTAGGATCGATAGCACGCAGAGGGGATCAGACTGATC
131 ACTAAGGGTTGCGG-AGCAG-ACCA-CAGCAGGATCGACAGCACGCAGGGGGGATC-GGGTCATC
* *
19619702 CCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCT
192 CCCG-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCT
19619767 TAGGCATACGGAGTTCATTCCATGTCTAAGC
256 TAGGCATACGGAGTTCATTCCATGTCTAAGC
19619798 CCCAGCCGGA
Statistics
Matches: 569, Mismatches: 93, Indels: 30
0.82 0.13 0.04
Matches are distributed among these distances:
379 123 0.22
383 1 0.00
386 1 0.00
391 22 0.04
392 160 0.28
393 258 0.45
394 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (387 bp):
TCGGCTTACGCACTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ACTAAGGGTTGCGGAGCAGACCACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCATCCCCG
CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCAGACAGAGTTCATTCCCAGTCTAAGATCGAGCCGAACTG
AGGGTTGCGATAGCAAGACCAGTAGAAGGATAGACAGCACGCAGGGGGGACCAGACCAATCA
Found at i:19619991 original size:26 final size:26
Alignment explanation
Indices: 19619955--19620005 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19619945 TGACTTAGGC
19619955 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
19619981 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
19620006 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:19620394 original size:158 final size:157
Alignment explanation
Indices: 19619981--19620479 Score: 495
Period size: 158 Copynumber: 3.2 Consensus size: 157
19619971 CAGTCTAAGT
* *
19619981 ATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGACACCAGGATCGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * * ** * * **
19620045 CATGCAGGGAGGATCGGGCCAATCCCCGACTTGTGCATTCTGCCTATCCAGTCGGCTGAGCACCC
65 CACGCAGGG-GGATCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCCC
* **
19620110 GCACGCCCATTTCATGGGTTGGCTTAGGC
129 GCACGCTCATTTTGTGGGTTGGCTTAGGC
* ** * * * ** *
19620139 ATAGGGAGTTCATTCCATGTC-AAGCCCTAG-CCGGACCGAGGGTTGTGGCAGTGGGA-CTGGTA
1 ATACGGAGTTCATTCCATGTCTAAGATC-AGACCAGACCGAGGGTTGCGACAGCAGGATC-GATA
* * * * * * *
19620201 GCACGCAGAGAGGGACCGAGTCGATCCTTGACTTACGTATTATGCCTCTTCGGTCGGCTCAGTGC
64 GCACGCAG-G-GGGATCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGC
** * *
19620266 CCAAACGCTCATTTTGTGGGTTGACATAGGC
127 CCGCACGCTCATTTTGTGGGTTGGCTTAGGC
* * *
19620297 ATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGCAACTGCAGGATCGATAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * * *
19620361 CACGCAGTGGGGATCGAGCCGGTCCTCGGCTTACACATTCTGCCTCTCCGATTGGCTGAGTGCCC
65 CACGCAG-GGGGATCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCCC
*
19620426 GCACGCTCATTTTGTGGGTTGGCTTAGGT
129 GCACGCTCATTTTGTGGGTTGGCTTAGGC
19620455 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
19620480 CATACGGAGT
Statistics
Matches: 266, Mismatches: 65, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 39 0.15
158 187 0.70
159 38 0.14
160 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGATAGC
ACGCAGGGGGATCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGC
ACGCTCATTTTGTGGGTTGGCTTAGGC
Found at i:19620491 original size:26 final size:26
Alignment explanation
Indices: 19620455--19620505 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19620445 TGGCTTAGGT
19620455 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
19620481 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19620506 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19620662 original size:183 final size:184
Alignment explanation
Indices: 19620295--19620663 Score: 528
Period size: 183 Copynumber: 2.0 Consensus size: 184
19620285 GTTGACATAG
* *
19620295 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACTGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACA
** *
19620360 GCACGCAGTGGGGATCGAGCCGGTCCTCGGCTTACACATTCTGCCTCTCCGATTGGCTGAGTGCC
66 GCACGCAGTGGGGATCGAGCCGGTCCTCGGCTTACACATTCTGCCTCTCCGATCAGCTGAGAGCC
* ** *
19620425 CGCACGCTCATTTTGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAA
131 CACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * **
19620479 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACA
* * * *
19620544 GCACGCAG-GGGGATC-AGGCCGATTCC-CGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGAG
66 GCACGCAGTGGGGATCGA-GCCG-GTCCTCGGCTTACACATTCTGCCTCTCCGATCAGCTGAGAG
**
19620606 CCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
19620662 GC
1 GC
19620664 CCTAGCAGGA
Statistics
Matches: 164, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
182 1 0.01
183 93 0.57
184 70 0.43
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACA
GCACGCAGTGGGGATCGAGCCGGTCCTCGGCTTACACATTCTGCCTCTCCGATCAGCTGAGAGCC
CACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:19620845 original size:26 final size:26
Alignment explanation
Indices: 19620809--19620859 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19620799 TAACTTAGGC
19620809 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
* *
19620835 ATACGGAGTTCATTCCCAGTGTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
19620860 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:19621175 original size:343 final size:347
Alignment explanation
Indices: 19620369--19621176 Score: 889
Period size: 354 Copynumber: 2.3 Consensus size: 347
19620359 AGCACGCAGT
* * * **
19620369 GGGGATCGAGCCGGTCCTCGGCTTACACATTCTGCCTCTCCGATTGGCTGAGTGCCCGCACGCTC
1 GGGGACCG-GCCGATCCTCGGCTTACACATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTC
* *
19620434 ATTTTGTGGGTTGGCTTAGGTATACGGAGTTCATT-CCATGTCTAAGCATACGGAGTTCATTCCC
65 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTCCC
* * * *
19620498 AGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGATCAGGC
129 AGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGACCAGGC
* * * **
19620563 CGATTCCCGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGAGCCCACACGCTTGTTTCATGGGT
194 CGATTCCCGGCTTGCGCATTCTACCTATCCAGTCAGCTGAGAGCCCACACGCCCGTTTCATGGGT
* * * *
19620628 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCAGGATCGAGGGTTGTGGCAGCAG
259 TGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAAGGTTGTGGCAGCAG
19620693 GACCTGCAGCGGGATCGACAACACGTAGAG
324 G--C-GCAGCGGGAT---CAACACGTAGAG
* * * * * * ** *
19620723 GGGGACCGGACTGATCCTCGGCTTTCGCATTATGCCTCTTCGGCCGACTGAACGCCCGCATGCTC
1 GGGGACCGG-CCGATCCTCGGCTTACACATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTC
* * * *
19620788 ATTTTATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCCCA
65 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * *
19620853 GTGTAAGATCAGACCGGATCGAGGGTTGCGATAGCAAGATCGATAGCACGCAGGGAGGACCGGGT
130 GTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGGG-GGACCAGGC
* ** **
19620918 CGA-TCCCTGGCTTGTGCATTCTACCTATCCAG-CAGGCTGAGCA-CCTGCACGCCCGTTTTGTG
194 CGATTCCC-GGCTTGCGCATTCTACCTATCCAGTCA-GCTGAG-AGCCCACACGCCCGTTTCATG
* * *
19620980 GGTTGTCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCA-
256 GGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAAGGTTGTGGCAG
* * *
19621044 CCGG-G-A-CTGG-T-AGCACGTAGAG
321 CAGGCGCAGCGGGATCAACACGTAGAG
* * * * * *
19621066 GGGGACCAGGCCGATCCTCGACTTGCATATTATGCCTCTCCGACCGGTTCAGTGCCCGAACGCTC
1 GGGGACC-GGCCGATCCTCGGCTTACACATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTC
* *
19621131 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
65 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19621177 ATTGGACCGG
Statistics
Matches: 377, Mismatches: 70, Indels: 25
0.80 0.15 0.05
Matches are distributed among these distances:
343 99 0.26
344 2 0.01
347 1 0.00
348 3 0.01
349 1 0.00
350 1 0.00
353 1 0.00
354 160 0.42
355 108 0.29
356 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (347 bp):
GGGGACCGGCCGATCCTCGGCTTACACATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCA
TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGACCAGGCCG
ATTCCCGGCTTGCGCATTCTACCTATCCAGTCAGCTGAGAGCCCACACGCCCGTTTCATGGGTTG
GCTTAGGCACACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAAGGTTGTGGCAGCAGGC
GCAGCGGGATCAACACGTAGAG
Found at i:19621291 original size:158 final size:159
Alignment explanation
Indices: 19620835--19621334 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 159
19620825 CAGTCTAAGT
* * *
19620835 ATACGGAGTTCATTCCCA-GTGTAAGATCAGACCGGATCGAGGGTTGCGA-TAGCAAGATCGATA
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTGCGACTACCAGGATCGATA
* * * * ** * * * *
19620898 GCACGCAGGGAGGACCGGGTCGATCC-CTGGCTTGTGCATTCTACCTATCC-AGCAGGCTGAGCA
65 GCACGAAGGGGGGACCGAGCCGATCCTC-GGCTTGCACATTCTGCCTCTCCGA-CCGGCTGAGCG
* * * *
19620961 CCTGCACGCCCGTTTTGTGGGTTGTCTTAGGC
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * ** * * * * * *
19620993 ACAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAAGGTTGTGGC-ACCGGGA-CTGGT
1 ATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGATCGAGGGTTGCGACTACCAGGATC-GAT
* * * * * * *
19621055 AGCACGTAGAGGGGGACC-AGGCCGATCCTCGACTTGCATATTATGCCTCTCCGACCGGTTCAGT
64 AGCACGAAG-GGGGGACCGA-GCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGC
*
19621119 GCCCGAACGCTCGTTTCGTGGGTTGACTTAGGC
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
** * *
19621152 ATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGATTGAGGGTTACGACTA-CAGGATCGATA
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTGCGACTACCAGGATCGATA
* *
19621215 GCATGAAGGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCC
65 GCACGAAGGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCC
*
19621280 CGCACGCTCGTTTCGTGGGTTGGCTTAGGC
130 CGCACGCTCGTTTCGTGGGTTGACTTAGGC
19621310 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
19621335 CATACGGAGT
Statistics
Matches: 269, Mismatches: 59, Indels: 28
0.76 0.17 0.08
Matches are distributed among these distances:
157 7 0.03
158 144 0.54
159 111 0.41
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTTGCGACTACCAGGATCGATAG
CACGAAGGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGC
Found at i:19621344 original size:26 final size:26
Alignment explanation
Indices: 19621308--19621386 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
19621298 GTTGGCTTAG
19621308 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19621334 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19621360 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
19621386 G
1 G
19621387 ATCGGATTGG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 1 0.02
26 51 0.98
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19621347 original size:855 final size:868
Alignment explanation
Indices: 19619470--19621360 Score: 2481
Period size: 855 Copynumber: 2.2 Consensus size: 868
19619460 GACCAGTAGT
* * * * ** * *
19619470 AGGATCGACAGCACGCAGGGGGGGACC-AGGCCAATCATCGGCTTATGCACTCTGCCTCTCCGGT
1 AGGATCGATAGCACG-AAGGGGGGACCGA-GCCGATCCTCGGCTTACACATTCTGCCTCTCCGAT
* * * * *
19619534 CGGCTGAGCACCCGCACTCTTGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTA
64 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * * *
19619599 AGCATACGGAGTTCAATCTCAGTCTAAGATCGGACCGGACTAAGGGTTATGGCAGCAGCACCAGC
129 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTATGGCAG-AG--CCAGC
* *
19619664 AGTAGGATCGATAGCACGCAGAGGGGATCAGACTGATCCCCGACTTGCGCATTCTGCCTCTCCGA
191 A--AGGATCGACAGCACGCAGAGGGGATCAGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGA
* *
19619729 TCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
254 TCGACTGAGAGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * ** *
19619794 AAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAAGACTGGCAGTGGGATCGTTAGCACAAAAAAAG
319 AAGCCCCAGCAGGATCGAGGGTTGTGGCAGCAAGACTGGCAGCGGGATCGACAACACAAAAAAAG
* * * * *
19619859 GGATCGGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGATCGGCCTTCCGGTAGGTTAAGTGC
384 GGACCGGACTGATCCTCGGCTTACGCATTATGCCTCT-C--TCGG-C--CCGGTAGCTGAAGCGC
* * *
19619924 CCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAG
443 CCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAG
* *
19619989 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACACCAGGATCGACAGCATGCAGGG
508 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACACCAAGATCGACAGCACGCAGGG
* *
19620054 AGGATCGGGCCAATCCCCGACTTGTGCATTCTGCCTATCCAGTCGGCTGAGCACCCGCACGCCCA
573 AGGACCGGGCCAATCCCCGACTTGTGCATTCTACCTATCCAGTCGGCTGAGCACCCGCACGCCCA
* * *
19620119 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAGCCCTAGCCGGACCGAGGGTTG
638 TTTCATGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCAAGCCCCAGCCGGACCGAAGGTTG
** * * *
19620184 TGGCAGTGGGACTGGTAGCACGCAGAGAGGGACCGAGTCGATCCTTGACTTACGTATTATGCCTC
703 TGGCACCGGGACTGGTAGCACGCAGAGAGGGACCGAGCCGATCCTCGACTTACATATTATGCCTC
* ** *
19620249 TTCGGTCGGCTCAGTGCCCAAACGCTCATTTTGTGGGTTGACATAGGCATACGGAGTTCATTCCC
768 TCCGACCGGCTCAGTGCCCAAACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCC
* *
19620314 AGTCTAAGATCAGACCAGACCAAGGGTTGCAACTGC
833 AGTCTAAGATCAGACCAGACCAAGGGTTACAACTAC
* * * * *
19620350 AGGATCGATAGCACGCAGTGGGGATCGAGCCGGTCCTCGGCTTACACATTCTGCCTCTCCGATTG
1 AGGATCGATAGCACGAAGGGGGGACCGAGCCGATCCTCGGCTTACACATTCTGCCTCTCCGATCG
* * * *
19620415 GCTGAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* *
19620480 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGG-T-T-GC-G-G-CAGC-AGGA
131 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTATGGCAGAGCCAGCAAGGA
* * * *
19620538 TCGACAGCACGCAG-GGGGATCAGGCCGATTCCCGGCTTGCGCATTCTGCCTCTCCGGTC-AGCT
196 TCGACAGCACGCAGAGGGGATCAGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGA-CT
*
19620601 GAGAGCCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
260 GAGAGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * ** * **
19620666 TAGCAGGATCGAGGGTTGTGGCAGCAGGACCT-GCAGCGGGATCGACAACACGTAGAGGGGGACC
325 CAGCAGGATCGAGGGTTGTGGCAGCAAGA-CTGGCAGCGGGATCGACAACACAAAAAAAGGGACC
* *
19620730 GGACTGATCCTCGGCTTTCGCATTATGCCTCT-TCGG-CC-G-A-CTGAA-CGCCCGCATGCTCA
389 GGACTGATCCTCGGCTTACGCATTATGCCTCTCTCGGCCCGGTAGCTGAAGCGCCCGCACGCTCA
*
19620789 TTTTATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCCCAG
454 TTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCCCAG
* * * * * * *
19620854 TGTAAGATCAGACCGGATCGAGGGTTGCGATAGCAAGATCGATAGCACGCAGGGAGGACCGGGTC
519 TCTAAGATCAGACCAGACCGAGGGTTGCGACACCAAGATCGACAGCACGCAGGGAGGACCGGGCC
* * * * * **
19620919 GATCCCTGGCTTGTGCATTCTACCTATCCAG-CAGGCTGAGCACCTGCACGCCCGTTTTGTGGGT
584 AATCCCCGACTTGTGCATTCTACCTATCCAGTC-GGCTGAGCACCCGCACGCCCATTTCATGGGT
*
19620983 TGTCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCACCGG
648 TGGCTTAGGCACAGGGAGTTCATTCCATGTC-AAGCCCCAGCCGGACCGAAGGTTGTGGCACCGG
* * *
19621048 GACTGGTAGCACGTAGAGGGGGACC-AGGCCGATCCTCGACTTGCATATTATGCCTCTCCGACCG
712 GACTGGTAGCACGCAGAGAGGGACCGA-GCCGATCCTCGACTTACATATTATGCCTCTCCGACCG
* * * *
19621112 GTTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
776 GCTCAGTGCCCAAACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAG
** * *** *
19621177 ATTGGACCGGATTGAGGGTTACGACTAC
841 ATCAGACCAGACCAAGGGTTACAACTAC
* *
19621205 AGGATCGATAGCATGAAGGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGATCG
1 AGGATCGATAGCACGAAGGGGGGACCGAGCCGATCCTCGGCTTACACATTCTGCCTCTCCGATCG
19621270 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
19621335 CATACGGAGTTCATT-CCATGTCTAAG
131 CATACGGAGTTCATTCCCA-GTCTAAG
19621361 CATACGGAGT
Statistics
Matches: 885, Mismatches: 119, Indels: 39
0.85 0.11 0.04
Matches are distributed among these distances:
853 1 0.00
854 215 0.24
855 305 0.34
856 1 0.00
857 1 0.00
858 2 0.00
862 4 0.00
865 1 0.00
866 182 0.21
867 19 0.02
870 4 0.00
873 1 0.00
875 1 0.00
876 2 0.00
877 1 0.00
878 1 0.00
879 129 0.15
880 15 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (868 bp):
AGGATCGATAGCACGAAGGGGGGACCGAGCCGATCCTCGGCTTACACATTCTGCCTCTCCGATCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTATGGCAGAGCCAGCAAGGA
TCGACAGCACGCAGAGGGGATCAGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTG
AGAGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGCAGGATCGAGGGTTGTGGCAGCAAGACTGGCAGCGGGATCGACAACACAAAAAAAGGGACCGG
ACTGATCCTCGGCTTACGCATTATGCCTCTCTCGGCCCGGTAGCTGAAGCGCCCGCACGCTCATT
TCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCCCAGTC
TAAGATCAGACCAGACCGAGGGTTGCGACACCAAGATCGACAGCACGCAGGGAGGACCGGGCCAA
TCCCCGACTTGTGCATTCTACCTATCCAGTCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGG
CTTAGGCACAGGGAGTTCATTCCATGTCAAGCCCCAGCCGGACCGAAGGTTGTGGCACCGGGACT
GGTAGCACGCAGAGAGGGACCGAGCCGATCCTCGACTTACATATTATGCCTCTCCGACCGGCTCA
GTGCCCAAACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCAAGGGTTACAACTAC
Found at i:19621581 original size:26 final size:26
Alignment explanation
Indices: 19621530--19621582 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19621520 GTTGACTTAG
*
19621530 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
19621556 GCATACGGAGTTCATTCTCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
19621582 G
1 G
19621583 ATTGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:19630596 original size:26 final size:26
Alignment explanation
Indices: 19630567--19630619 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19630557 GTTGACTTAG
*
19630567 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
19630593 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19630619 G
1 G
19630620 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19631516 original size:26 final size:26
Alignment explanation
Indices: 19631486--19631538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19631476 GTTGATTTAG
19631486 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
19631512 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
19631538 G
1 G
19631539 ATAGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:19631820 original size:159 final size:158
Alignment explanation
Indices: 19631606--19632053 Score: 409
Period size: 158 Copynumber: 2.8 Consensus size: 158
19631596 CCGATCCCCA
* * * * * * * * ***
19631606 ACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGG
1 ACTTACGCATTATGCCTCTACGGTCGGCTCAACGCCCGAACGCTCATTACATGGGTTGGCTTAGG
* ** *
19631671 CATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCGGGACCGGCAG
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAAGACCGACAG
* * *
19631736 CACGCAGAGGGGGATCGGGTC-GATCGTCG
131 CACGCAG-GAGGGACCGGGTCAG-TCCTCG
* ** * * *
19631765 GCTTGTGCATTATGCCTCTACGGTCGGCTCAATGCCCGAACGCTCGTTACATGGGTTGACTTAGG
1 ACTTACGCATTATGCCTCTACGGTCGGCTCAACGCCCGAACGCTCATTACATGGGTTGGCTTAGG
*** * * * *
19631830 CATACGGAGTTCATTCC-TAGTCTAAG-ATTAGACCAGATCGAGTGTTGTGGTAGCAAGATCGAC
66 CATACGGAGTTCATTCCAT-GTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCAAGACCGAC
*
19631893 AGCACGTAGGAGGGACCGGGTCAGTCCTCG
129 AGCACGCAGGAGGGACCGGGTCAGTCCTCG
* * * * * * *
19631923 ACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
1 ACTTACGCATTATGCCTCTACGGTCGGCTCAACGCCCGAACGCTCATTACATGGGTTGGCTTAGG
* ** * * * *
19631988 CATACGGAGTTCATTCCAAT-ACTAAGCCCCAGTCGGACCGAGGGTTATGGCAGTAGGACCGACA
66 CATACGGAGTTCATTCC-ATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAAGACCGACA
19632052 GC
130 GC
19632054 GGGGATCGAT
Statistics
Matches: 226, Mismatches: 57, Indels: 13
0.76 0.19 0.04
Matches are distributed among these distances:
158 117 0.52
159 108 0.48
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
ACTTACGCATTATGCCTCTACGGTCGGCTCAACGCCCGAACGCTCATTACATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAAGACCGACAG
CACGCAGGAGGGACCGGGTCAGTCCTCG
Found at i:19631986 original size:158 final size:156
Alignment explanation
Indices: 19631512--19632004 Score: 517
Period size: 158 Copynumber: 3.1 Consensus size: 156
19631502 CCCAGTCTAA
* * * *
19631512 GCATATGGAGTTCATTCCTAGTCTAAGATAGGATCAGACTGAGGGTTGCGGCAGCAGGATC-AGC
1 GCATACGGAGTTCATTCCTAGTCTAAGATA-GACCAGAC-GAGGGTTGTGGTAGCAGGATCGA-C
* * * * * *
19631576 AGCACATAGGGGGGACTGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGC
63 AGCACGTAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
19631641 CCGCACGCCCATTTTGTGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * *
19631670 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCGGGACCGG
1 GCATACGGAGTTCATTCCTA-GTCTAAG--ATAGACCAGA-CGAGGGTTGTGGTAGCAGGATCGA
* * * * * * * * **
19631733 CAGCACGCAGAGGGGGATCGGGTCGATCGTCGGCTTGTGCATTATGCCTCTACGGTCGGCTCAAT
62 CAGCACGTAG-GGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * * *
19631798 GCCCGAACGCTCGTTACATGGGTTGACTTAG
126 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
19631829 GCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGATCGAGTGTTGTGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGA-TAGACCAGA-CGAGGGTTGTGGTAGCAGGATCGACA
* *
19631894 GCACGTAGGAGGGACCGGGTC-AGTCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGC
64 GCACGTAGGGGGGACCGGGTCGA-TCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
19631958 CCGCACGCTCATTTCGTGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
19631987 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
19632005 AATACTAAGC
Statistics
Matches: 265, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 139 0.52
159 122 0.46
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATAGACCAGACGAGGGTTGTGGTAGCAGGATCGACAGC
ACGTAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:19632013 original size:158 final size:158
Alignment explanation
Indices: 19631587--19632053 Score: 463
Period size: 159 Copynumber: 2.9 Consensus size: 158
19631577 GCACATAGGG
* * * * * *
19631587 GGGACTGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCCA
1 GGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCA
* * * * *
19631652 TTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
66 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-ATCTAAGCACCAACCAGACCGAGGGTT
** * *
19631717 GTGGTAGCGGGACCGGCAGCACGCAGAGG
130 GTGGTAGCAAGACCGACAGCACGCAGAGA
* * * * * * * ** * *
19631746 GGGATCGGGTCGATCGTCGGCTTGTGCATTATGCCTCTACGGTCGGCTCAATGCCCGAACGCTCG
1 GGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCA
* * * * ** * *
19631811 TTACATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATTAGACCAGATCGAGTGT
66 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-AATCTAAGCACCA-ACCAGACCGAGGGT
* *
19631875 TGTGGTAGCAAGATCGACAGCACGTAG-GA
129 TGTGGTAGCAAGACCGACAGCACGCAGAGA
*
19631904 GGGACCGGGTC-AGTCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
1 GGGACCGGGTCGA-TCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
* ** *
19631968 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAATACTAAGCCCCAGTCGGACCGAGGGT
65 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAT-CTAAGCACCAACCAGACCGAGGGT
* * * *
19632033 TATGGCAGTAGGACCGACAGC
129 TGTGGTAGCAAGACCGACAGC
19632054 GGGGATCGAT
Statistics
Matches: 240, Mismatches: 63, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 116 0.48
159 120 0.50
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCA
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAATCTAAGCACCAACCAGACCGAGGGTTG
TGGTAGCAAGACCGACAGCACGCAGAGA
Found at i:19632199 original size:26 final size:26
Alignment explanation
Indices: 19632169--19632224 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
19632159 TGGGTTGACT
19632169 TAAGCATACGGAGTTCA-TCTCCAGTC
1 TAAGCATACGGAGTTCATTC-CCAGTC
19632195 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19632221 TAAG
1 TAAG
19632225 ATTAGACCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19632567 original size:159 final size:158
Alignment explanation
Indices: 19632404--19632690 Score: 335
Period size: 158 Copynumber: 1.8 Consensus size: 158
19632394 CCGAGGGTTA
* * * * * *
19632404 TGGCAGCGAG-ATTGACAGCACATAGAGGGGGATTGAGCCAATCCCCGGCTTGTGCATTATGCCT
1 TGGCAGC-AGTATCGACAGCACACAG-GGGGGATCGAGCCAATCCCCGACTTGCGCATTATACCT
* * *
19632468 CTCCGG-TCGGCTCAGTGCCCGAACGCTAATTTCGTGGGTTGACTTAGACATATGGAGTTCATTC
64 CTCCGGCT-GGCTCAGCGCCCGAACGCTAATTTCGTGGGTTGACTTAGACATACGAAGTTCATTC
19632532 CCAATCTAAGATCAGACTGGATCGAGTTTGG
128 CCAATCTAAGATCAGACTGGATCGAGTTTGG
* * * * * *
19632563 TGGCAGCAGTATCGATAGCACACAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTACCTTT
1 TGGCAGCAGTATCGACAGCACACAGGGGGGATCGAGCCAATCCCCGACTTGCGCATTATACCTCT
* * * ** * *
19632628 CCGGCTGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCC
66 CCGGCTGGCTCAGCGCCCGAACGCTAATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCC
19632691 ATGTCTAAGC
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
158 84 0.81
159 20 0.19
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
TGGCAGCAGTATCGACAGCACACAGGGGGGATCGAGCCAATCCCCGACTTGCGCATTATACCTCT
CCGGCTGGCTCAGCGCCCGAACGCTAATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCA
ATCTAAGATCAGACTGGATCGAGTTTGG
Found at i:19632672 original size:158 final size:158
Alignment explanation
Indices: 19632255--19632701 Score: 422
Period size: 159 Copynumber: 2.8 Consensus size: 158
19632245 GCGACAGTAG
** * **
19632255 GATCGACAGCACGTAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGC
1 GATCGACAGCACACAGGGGGGATCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCTGGC
* * * * *
19632320 TGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGC
65 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGC
*
19632384 CCCAGCCGAACCGAGGGTTATGGCAGCGA
130 ACCAGCCGAACCGAGGGTTATGGCAGCGA
* * * * * * *
19632413 GATTGACAGCACATAGAGGGGGATTGAGCCAATCCCCGGCTTGTGCATTATGCCTCTCCGG-TCG
1 GATCGACAGCACACAG-GGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGCT-G
* * * ** * * *
19632477 GCTCAGTGCCCGAACGCTAATTTCGTGGGTTGACTTAGACATATGGAGTTCATTCCCA-ATCTAA
63 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAA
* * * * * *
19632541 G-ATCAGACTGGATCGA-GTTTGGTGGCAGC-A
128 GCACCAG-CCGAACCGAGGGTT-ATGGCAGCGA
* * * *
19632571 GTATCGATAGCACACAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTACCTTTCCGGCTGG
1 G-ATCGACAGCACACAGGGGGGATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGGCTGG
* * *
19632636 CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAG
64 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAG
19632700 CA
129 CA
19632702 TACAGAGTTT
Statistics
Matches: 227, Mismatches: 51, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 106 0.47
159 110 0.48
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GATCGACAGCACACAGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCA
CCAGCCGAACCGAGGGTTATGGCAGCGA
Found at i:19632911 original size:26 final size:26
Alignment explanation
Indices: 19632881--19632940 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
19632871 GTTGACTTAG
*
19632881 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAATCTAA
* * *
19632907 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGACTTCATCCCCAATCTAA
19632933 G-AT-CGGAC
1 GCATACGGAC
19632941 CAGACCAAGG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAATCTAA
Found at i:19633381 original size:158 final size:156
Alignment explanation
Indices: 19632915--19633410 Score: 469
Period size: 158 Copynumber: 3.1 Consensus size: 156
19632905 AAGCATATGG
* * *** * * * *
19632915 AGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAAGATCGACAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCAGA-CAGAATGAGGGTTGTGGCAACAGGATCGACAGCACACAG
* * ** * *
19632980 AGGGGACCGAGCCGATCTTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAACGCCCGCACG-T
65 AAGGGACCG-GCCGATCTCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGTACGCT
* * *
19633044 CCATTTCGTGGGTTGGCTTAGGCATAGGG
129 -CATTTCATGGGTTGGCTTAGGCATACGA
** * * * * *
19633073 AGTTCATT-CCATGTCTAAGCCCCAGCCAGAATGAGGGTTGTGGTAGCGGGACCGACAGCACACA
1 AGTTCATTCCCA-GTCTAAG-ATCAGACAGAATGAGGGTTGTGGCAACAGGATCGACAGCACACA
* * * * ** * * *
19633137 GAGAGGGATCGGGCTGATC-CCTGGCTTGCGCATTATGCCTCTCCGGTCGGTTCAGTGCCTGTAC
64 GA-AGGGA-CCGGCCGATCTCC-GGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGTAC
* *
19633201 GCTCGTTTCATGGGTTGACTTAGGCATACGA
126 GCTCATTTCATGGGTTGGCTTAGGCATACGA
* * * *
19633232 AGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAATAGGATCGACAACACACAG
1 AGTTCATTCCCAGTCTAAGATCAGACAGAAT-GAGGGTTGTGGCAACAGGATCGACAGCACACAG
* * **
19633297 AAGGGACCAGGTCGGTCTCCGGCTTATGCATTCTACCTCTCCGACCGGTTGAGCGCCCGTACGCT
65 AAGGGACC-GGCCGATCTCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGTACGCT
19633362 CATTTCATGGGTTGGCTTAGGCATAC-A
129 CATTTCATGGGTTGGCTTAGGCATACGA
19633389 GAGTTCATTCCCAGTCTAAGAT
1 -AGTTCATTCCCAGTCTAAGAT
19633411 AGGATCGAAT
Statistics
Matches: 269, Mismatches: 58, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 146 0.54
159 112 0.42
160 6 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (156 bp):
AGTTCATTCCCAGTCTAAGATCAGACAGAATGAGGGTTGTGGCAACAGGATCGACAGCACACAGA
AGGGACCGGCCGATCTCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGTACGCTCA
TTTCATGGGTTGGCTTAGGCATACGA
Found at i:19633954 original size:26 final size:26
Alignment explanation
Indices: 19633924--19633976 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19633914 GTTGACTTAG
19633924 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
19633950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
19633976 G
1 G
19633977 ATTGCACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:19634312 original size:159 final size:158
Alignment explanation
Indices: 19634149--19634442 Score: 378
Period size: 158 Copynumber: 1.9 Consensus size: 158
19634139 AGCTGGAACA
* * * *
19634149 AGGGTTGTGGCAG-TGTGATCGACAACACCCAGAGGGGGA-TCGGGCTGATCC-CTGGCTTGCGC
1 AGGGTTGTGGCAGCAG-GATCGACAACACCCAGA-GGGCACTAGGGC-GATCCTC-GGCTTACGC
* * *
19634211 ATTATGCCTCTCCGGTCAGTTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
62 ATTATGCCTCTACGGTCAGTTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
19634276 GTTCATTCCCAGTCAAAGATCAGACCGAACTG
127 GTTCATTCCCAGTCAAAGATCAGACCGAACTG
* * ** * * *
19634308 AGGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGGCACTAGGTCGATCCTCGGCTTACGTATTT
1 AGGGTTGTGGCAGCAGGATCGACAACACCCAGAGGGCACTAGGGCGATCCTCGGCTTACGCATTA
* * *
19634373 TGCCTCTACGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTC
66 TGCCTCTACGGTCAGTTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
19634438 ATTCC
131 ATTCC
19634443 ATGTCTAAGC
Statistics
Matches: 115, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
158 83 0.72
159 31 0.27
160 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
AGGGTTGTGGCAGCAGGATCGACAACACCCAGAGGGCACTAGGGCGATCCTCGGCTTACGCATTA
TGCCTCTACGGTCAGTTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
ATTCCCAGTCAAAGATCAGACCGAACTG
Found at i:19634461 original size:26 final size:26
Alignment explanation
Indices: 19634425--19634477 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19634415 GTTGGCTTAG
19634425 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
19634451 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
19634477 G
1 G
19634478 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19634657 original size:26 final size:26
Alignment explanation
Indices: 19634621--19634673 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19634611 GTTGACTTAG
19634621 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19634647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19634673 G
1 G
19634674 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19635726 original size:26 final size:26
Alignment explanation
Indices: 19635696--19635748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19635686 GTTAACTTAG
*
19635696 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
19635722 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19635748 G
1 G
19635749 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19636390 original size:185 final size:184
Alignment explanation
Indices: 19636039--19636427 Score: 487
Period size: 185 Copynumber: 2.1 Consensus size: 184
19636029 GTTGACTTAG
* * * **
19636039 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAAGATCAACA
* * * * *
19636104 ACACGTAGGGGGGACTAGGGTGCTCCCCGACTTACGCATTCTGCCTCTCCGATCCACTGTACGCC
66 ACACGCAGGGGGGACCAAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCCACTGTACGCC
* * *
19636169 CGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAA
131 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAA
* * * *
19636223 GCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGCAGTAGCAAGATCAGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAAGATCAACA
* * * * **
19636288 ACATGCAGGGGGGGACCAAGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG-A-GC
66 ACACGCA-GGGGGGACCAAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCCACTGTACGC
** *
19636351 AACCGCTTGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
130 --CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
19636408 GCATACGGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
19636428 GTGTAAGAGT
Statistics
Matches: 174, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
183 2 0.01
184 62 0.36
185 107 0.61
186 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAAGATCAACA
ACACGCAGGGGGGACCAAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCCACTGTACGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
Found at i:19636418 original size:26 final size:26
Alignment explanation
Indices: 19636382--19636434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19636372 GTTGACTTAG
19636382 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
19636408 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19636434 G
1 G
19636435 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19638449 original size:26 final size:26
Alignment explanation
Indices: 19638412--19638464 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19638402 GTTGGCTTAG
*
19638412 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
19638438 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
19638464 G
1 G
19638465 AACGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:19638455 original size:492 final size:496
Alignment explanation
Indices: 19637812--19638940 Score: 1177
Period size: 501 Copynumber: 2.3 Consensus size: 496
19637802 ACAGGACCAG
* * ** * * *
19637812 CAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGTGCATTATGCATCTTC
1 CAGCAGGATCGACAGCA--CACAGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCC
* * * * * * * *
19637877 GATCGACTGAGTGCTCGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-G
64 GGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATG
* * * *
19637941 TCTAAGCATACGGAGCTCATTCCCAG-CATAAGATCAGACCGGACTGAGGGTTGCAACAACAGGA
128 TCTAAGCATACGAAGCTCATTCCCAGTC-TAAGAACAGACCAGACTGAGGGTTACAACAACAGGA
** * *
19638005 TCGGTAGCACGCAGGGGGGATCGTACCGATCCCCGACTTGCGCATTCTG-CCTGTCCGATCGACT
192 TCGACAGCACGCAGGGGGGATCGGACCGATCCCCGACCTGCGCATTCTGTCCTGTCCGATCG-CT
** * ** *
19638069 GGGAGC-TGCATGC-C-CATTTTGTGGGTTGGCCTAGGCAT-A-CATTCCATGTCTAATCCCCAA
256 -GGAGCACCCATACACTCATTTCATGGGTTGGCCTAGGCATGATCATTCCATGTCTAAGCCCCAA
* * * * ** *
19638129 TCGAACCGAGGGTTGTGGCA-GCGGGACTGATAGCACGCAGAGGGGGACCAGGCTGATCTTCGGT
320 CCGAACCGAGGGTTATGGCATG-GGGACTGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGC
* * ** *
19638193 TTGTGCATTATGACTCTTCGGTCT-GCTCAGTG-CTCGAATGCTCGTTTCGTGGGTTGACTTAGG
384 TTGTGCATTATGACTCTCCGAT-TGGCTCAACGCCT-GAACGCTCGTTTCGTGGGTTGACTTAGG
* *
19638256 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGA
447 CATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTACGA
* * *
19638306 TAGTAGGATCGACAGCACACAGGGGGACCGGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCGG
1 CAGCAGGATCGACAGCACACAGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGG
* * * *
19638371 TTGGCAGAGTGCCCGCACGTTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 TCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * ** **
19638436 AAGCATACGAAGTTCATTCCTAGTCTAAGAACGGATCAGACTGAGGGTTATGACAGTAGGATCGA
131 AAGCATACGAAGCTCATTCCCAGTCTAAGAACAGACCAGACTGAGGGTTACAACAACAGGATCGA
* * * * * * * *
19638501 CCGCACGTAGGGGGGATCGGGCCGATCCCCGACCTGTGCATTCTGTCCTTTCCGGTCGGTTGAGC
196 CAGCACGCAGGGGGGATCGGACCGATCCCCGACCTGCGCATTCTGTCCTGTCCGATCGCTGGAGC
* * *
19638566 ACCCATACACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
261 ACCCATACACTCATTTCATGGGTTGGCCTAGGCAT---GA--TCATTCCATGTCTAAGCCCCAAC
* * *
19638631 CGGACCGAGGGTTATGGCATGGGGACTGACAGCACGCAGAGTGGGACCGGGCCGATCCCCGGCTT
321 CGAACCGAGGGTTATGGCATGGGGACTGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTT
* *
19638696 GTGCATTATGGCTCTCCGATTGGCTTAACGCCTGAACGCTCGTTTCGTGGGTTGACTTAGGCATA
386 GTGCATTATGACTCTCCGATTGGCTCAACGCCTGAACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
19638761 GGGAGTTCATTCCCAGTCTACCATCGGACCGGACCGAGGGTTACGA
451 CGGAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTACGA
* *** * **
19638807 CAGCAGGATC-AGTAGCATGTAGGGAGGACCGGGCCGATCTCTGGCTTACGCATTCTGCCTCTCC
1 CAGCAGGATCGA-CAGCACACAGGG-GGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCC
* * * * * *
19638871 GGTCGGTTGGGCGCCCGCACGCCCGTTTCGT-GGTTGGCTTCCGGCATAACGGAGTTTCATTCCA
64 GGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTT-AGGCAT-ACGGAG-TTCATTCCA
19638935 TGTCTA
126 TGTCTA
19638941 CCAAATTGGG
Statistics
Matches: 516, Mismatches: 98, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
491 7 0.01
492 182 0.35
493 12 0.02
494 35 0.07
498 1 0.00
500 2 0.00
501 191 0.37
502 65 0.13
503 6 0.01
504 15 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (496 bp):
CAGCAGGATCGACAGCACACAGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGG
TCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCATACGAAGCTCATTCCCAGTCTAAGAACAGACCAGACTGAGGGTTACAACAACAGGATCGA
CAGCACGCAGGGGGGATCGGACCGATCCCCGACCTGCGCATTCTGTCCTGTCCGATCGCTGGAGC
ACCCATACACTCATTTCATGGGTTGGCCTAGGCATGATCATTCCATGTCTAAGCCCCAACCGAAC
CGAGGGTTATGGCATGGGGACTGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCA
TTATGACTCTCCGATTGGCTCAACGCCTGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTACGA
Found at i:19639772 original size:26 final size:26
Alignment explanation
Indices: 19639736--19639788 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19639726 GTTGACTTAG
19639736 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
19639762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19639788 G
1 G
19639789 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19639946 original size:184 final size:182
Alignment explanation
Indices: 19639388--19639947 Score: 552
Period size: 196 Copynumber: 3.0 Consensus size: 182
19639378 TAGGCATAGA
* * *
19639388 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGTAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGACGGTTGCGACAGTAGGATCGACAGCACGCA
* * **
19639453 TGGGGGGACCTGGGTGGTCCCCTGCTTATGCATTCTGCCTCTCTGGCTGGCTGAGTGCCCGCACG
66 -GGGGGGA-CTGGGTGATCCCC-GCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCACCCGCACG
* * * * * *
19639518 CTCTTTTCGTGGGTAT-GCTTAGGCGTACAGAGTTTATTCCATGTATAAGCCTACG
128 CTCATTTCGTGGGT-TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* * * * *
19639573 GAGTTCTTTCCCAGTCTAAGATCGGATTGGATCGAAGATTACGGTAGCAGGACCAGCAGTAGGAT
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGA-C--CG---ACGGTTGC--G---A-CAGTAGGAT
* **
19639638 CGACAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT-TCAACTGGCTG
54 CGACAGCACGCAGGGGGGACTGGGT-GATCCCC-GCTTACGCATTCTGCCTCTCT-GGCTGGCTG
* * * *
19639702 AGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCAT
116 AGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCAT
19639766 ACG
180 ACG
* * *
19639769 GAGTTCATTCCCAGTCTAAGATCAAACTGGACCGACGGTTGCGACAGTAGGATCGGCATCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGACGGTTGCGACAGTAGGATCGACAGCACGCA
* * * * * *
19639834 GGGTGGA-TCGAGCTGATCCCCGACTTACGCATTTTGCCTATCTGGCCGACTGAGCACCCGCACG
66 GGGGGGACT-G-GGTGATCCCCG-CTTACGCATTCTGCCTCTCTGGCTGGCTGAGCACCCGCACG
* * *
19639898 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
19639948 CCTAGTCGGA
Statistics
Matches: 305, Mismatches: 49, Indels: 43
0.77 0.12 0.11
Matches are distributed among these distances:
183 2 0.01
184 103 0.34
185 36 0.12
186 1 0.00
188 2 0.01
190 7 0.02
191 5 0.02
193 2 0.01
195 13 0.04
196 114 0.37
197 20 0.07
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (182 bp):
GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGACGGTTGCGACAGTAGGATCGACAGCACGCA
GGGGGGACTGGGTGATCCCCGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCACCCGCACGCTC
ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
Found at i:19640086 original size:343 final size:341
Alignment explanation
Indices: 19639638--19640448 Score: 1090
Period size: 343 Copynumber: 2.4 Consensus size: 341
19639628 GCAGTAGGAT
* * * * * * * *
19639638 CGACAGCACGCAG-GGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCAACTGGCTG
1 CGACAGCACGCAGAGGGGGACCGAGCCGAT-CCCGACTTGCGCATTATGCCTCTTCGACCGGCTC
* *
19639702 AGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATA
65 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCC-AGTCTAAGCATA
* * *
19639767 CGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGACGGTTGCGACAGTAGGATCGGCATCACG
129 CGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGACGGTTGCGACAGCAGGATCGACAGCACG
* * *
19639832 CAGGGTGGATCGAGCTGATCCCCGACTTACGCAT-TT-TGCCTATCTGGCCGACTGAGCACCCGC
194 CAGGGGGGATCGAGCCGATCCCCGA-TT-CGCATATTCTGCCTATCCGGCCGACTGAGCACCCGC
* *
19639895 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACC
257 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCTAGTCAGACC
*
19639960 GAGGGTTGTGGCTA-CGGGTC
322 GAGGGTTGTGGC-AGCGGGAC
* *
19639980 CGACAGCATGCAGAGGGGGACCGAGCCGATCCTTGACTTGCGCATTATGCCTCTTCGACCGGCTC
1 CGACAGCACGCAGAGGGGGACCGAGCCGATCC-CGACTTGCGCATTATGCCTCTTCGACCGGCTC
* *
19640045 AGCACCCGCACGCTCATTTCTTGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATA
65 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCAT-CCCAGTCTAAGCATA
** * * *
19640110 CGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGACAGCAGGATCGACAGCACG
129 CGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGACGGTTGCGACAGCAGGATCGACAGCACG
* * * * * * *
19640175 CAGGGGGGATCGGGCCGATCCCCGATTTGTATATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAC
194 CAGGGGGGATCGAGCCGATCCCCGATTCGCATATTCTGCCTATCCGGCCGACTGAGCACCCGCAC
* * * *
19640240 TCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATATCTATGCCCTAGTCAGATCGA
259 GCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCTAGTCAGACCGA
*
19640305 GGGTTGTGGCAGCTGGAC
324 GGGTTGTGGCAGCGGGAC
* * **
19640323 CGACAGCACGTAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTC
1 CGACAGCACGCAGAGGGGGACCGAGCCGATCCCGA-CTTGCGCATTATGCCTCTTCGACCGGCTC
* * *
19640388 AACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGTAGTTCATTCCCAGTCTAAG
65 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCA-TCCCAGTCTAAG
19640449 ATCAGACCGG
Statistics
Matches: 410, Mismatches: 51, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
341 3 0.01
342 20 0.05
343 383 0.93
344 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (341 bp):
CGACAGCACGCAGAGGGGGACCGAGCCGATCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCA
GCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCAAACTGGACCGACGGTTGCGACAGCAGGATCGACAGCACGCA
GGGGGGATCGAGCCGATCCCCGATTCGCATATTCTGCCTATCCGGCCGACTGAGCACCCGCACGC
CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCTAGTCAGACCGAGG
GTTGTGGCAGCGGGAC
Found at i:19640115 original size:26 final size:26
Alignment explanation
Indices: 19640079--19640131 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19640069 GTTGACTTAT
19640079 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19640105 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19640131 G
1 G
19640132 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19640606 original size:159 final size:157
Alignment explanation
Indices: 19640105--19640607 Score: 519
Period size: 159 Copynumber: 3.2 Consensus size: 157
19640095 CCCAGTCTAA
* * *
19640105 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* ** ***
19640170 GCACGCAGGGGGGATCGGGCCGATCCCCGATTTGTATATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA-CGCC
* * * *
19640235 CGCACTCCCATTTCATGGGTTGGCTTAG
130 CGCACACTCGTTTCATGGGTTGGCTTTG
* * * * ** * * * *
19640263 GCATAGGGAGTTCGTT-CCATATCTATGCCCTAG-TCAGATCGAGGGTTGTGGCAGCTGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
19640326 CAGCACGTAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCAAC
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCT-GAC
* * *
19640391 GCCCGCACGCTCGTTTCGTGGGTTGACTTAT-
127 GCCCGCACACTCGTTTCATGGGTTGGCTT-TG
* * * *
19640422 GCATACGTAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
19640487 GCACACAGGTGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGATCGGCTGACTGC
66 GCACGCAGG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAC-GC
*
19640552 CCGTACACTCGTTTCATGGGTTGGCTTTG
129 CCGCACACTCGTTTCATGGGTTGGCTTTG
19640581 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
19640608 CATACGGAGT
Statistics
Matches: 273, Mismatches: 61, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 62 0.23
159 204 0.75
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGACGCCC
GCACACTCGTTTCATGGGTTGGCTTTG
Found at i:19640611 original size:26 final size:26
Alignment explanation
Indices: 19640581--19640633 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19640571 GTTGGCTTTG
19640581 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
19640607 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19640633 G
1 G
19640634 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19641841 original size:342 final size:341
Alignment explanation
Indices: 19641261--19641990 Score: 924
Period size: 342 Copynumber: 2.1 Consensus size: 341
19641251 GCGCCTGCAT
* * *
19641261 GCTCGTTTCGTGGGTTGACTTAGGCATTCGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATC
1 GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCAT-CCCAGTCAAAGCATATGAAGTTCATC
* * * *
19641326 TCAGTCTAAGATCGGACCGGACCGACGATTGCGACAGCAGGATCGATAGCACGCAGGGGGGACCG
65 GCAGTCTAAGATCGGACCGGACCGAAGATTGCGACAGCAAGATCGACAGCACGCAGGGGGGACCG
* * * **
19641391 AGTCGATCCTCGGCTTATGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCCCATTTTGTG
130 AGTCGATCCCCGACTTATGCATTCTGCCTCTCCGATCAGCTGAGCACCCGCACGCCCATTTCATG
* *
19641456 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCAGGACCGAGGGTTGTGGCTG
195 GGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCTAGCAGGACCGAGGGTTGTGGCAG
* * * * *
19641521 -GGGTTCCGGCAACACGCAGAGGGCAATCGGGCCAATCCCCGGCTTACGCATTATGCCTCTTCTA
260 CAGGAT-CGACAACACGCAGAGGGCAATCGAGCCAATCCCCGGCTTACGCATTATGCCTCTTCGA
* *
19641585 CCGGCTTAGCGCCCGAAC
324 CCGGCTCAACGCCCGAAC
* * *
19641603 GCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATCCCTAGTCAAAGCATATGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCC-AGTCAAAGCATATGAAGTTCA-T
* * * * *
19641668 CGCCGTCTAAGATCGGACTGGACTGAAGGTTGCGACAGCAAGATCGACAGCATGCAGGGGGGACC
64 CGCAGTCTAAGATCGGACCGGACCGAAGATTGCGACAGCAAGATCGACAGCACGCAGGGGGGACC
* * * * * * *
19641733 GGGTTGATCCCCTACTTGTGC-TTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCCTATTTCAT
129 GAGTCGATCCCCGACTTATGCATTCTGCCTCTCCGATCAGCTGAGCACCCGCACGCCCATTTCAT
* ** *
19641797 GGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTATGCCCTAGTTGGATCGAGGGTTGTGGCA
194 GGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCTAGCAGGACCGAGGGTTGTGGCA
* * ** * * * *
19641862 GCAGGATCGACAGCACGTAGAGGGGGATCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGG
259 GCAGGATCGACAACACGCAGAGGGCAATCGAGCCAATCCCCGGCTTACGCATTATGCCTCTTCGA
** ** *
19641927 TTGGCTCAACGGTCGCAC
324 CCGGCTCAACGCCCGAAC
19641945 GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTC
1 GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCA-TCCCAGTC
19641991 TAAGATCGGG
Statistics
Matches: 329, Mismatches: 55, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
341 3 0.01
342 247 0.75
343 79 0.24
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (341 bp):
GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCAGTCAAAGCATATGAAGTTCATCG
CAGTCTAAGATCGGACCGGACCGAAGATTGCGACAGCAAGATCGACAGCACGCAGGGGGGACCGA
GTCGATCCCCGACTTATGCATTCTGCCTCTCCGATCAGCTGAGCACCCGCACGCCCATTTCATGG
GTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCTAGCAGGACCGAGGGTTGTGGCAGC
AGGATCGACAACACGCAGAGGGCAATCGAGCCAATCCCCGGCTTACGCATTATGCCTCTTCGACC
GGCTCAACGCCCGAAC
Found at i:19642130 original size:158 final size:157
Alignment explanation
Indices: 19641652--19642152 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 157
19641642 CCTAGTCAAA
* * * * * * *
19641652 GCATATGGAGTTCATTCGC-CGTCTAAGATCGGACTGGA-CTGAAGGTTGCGACAGCAAGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGATCGGTC-GGATC-GAGGGTTGTGGCAGCAGGATCGA
* * ** ** * * *
19641715 CAGCATGCAGGGGGGACCGGGTTGATCCCCTACTTGTGC-TTCTGCCTCTCCGGTCAGCTGAGCG
63 CAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGGG
* *
19641779 CCCGCACGC-CTATTTCATGGGTTGGCTTAG
128 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * *
19641809 GCATA-GGAAGTTCATTCCATGTCTATGCCCTAGTTGGATCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGG-AGTTCATTCCATGTCTAAGATC-GGTCGGATCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * ** *
19641873 AGCACGTAGAGGGGGATCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTTGGCTCAACG
64 AGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGG-TTGAGG
* * *
19641938 G-TCGCACGCTCGTTTCGTGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
19641968 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGGTCGGATCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-GGTCGGATCGAGGGTTGTGGCAGCAGGATCGAC
* * *
19642032 AGCACATAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGGTTGAGGGC
64 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGGGC
19642097 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
19642126 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
19642153 CATATAGAGT
Statistics
Matches: 275, Mismatches: 57, Indels: 23
0.77 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 58 0.21
158 111 0.40
159 95 0.35
160 8 0.03
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGTCGGATCGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGGGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19643165 original size:159 final size:156
Alignment explanation
Indices: 19642902--19643392 Score: 457
Period size: 158 Copynumber: 3.1 Consensus size: 156
19642892 AGACCGGACT
** ** * ** * *
19642902 GAGGGTTACGGTAGCAGGATCGACAGCACGTGGGGGGGACCAGGCCAATCCCCGAC-TACCGCAT
1 GAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGACTGATCCCCGGCTTGCC-CAT
* * * * ** * * *
19642966 TTTGCCTCTCC-AACAGGCTAAGCGCCCGCGTGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
65 TATGCCTCTCCGATC-GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* *
19643030 TTCACTCCATGTCTAAACCCCAGCCAGATC
129 TTCATTCCA-GTCTAAACCCCAGTC-GATC
** * **
19643060 GAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTTGTGCAT
1 GAGGGTTGTGGTAGCAGGATCGACAGCACGCAG-GGGGGACCAGACTGATCCCCGGCTTGCCCAT
* * * *
19643125 TATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGT
65 TATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* **
19643190 TCATTCCCAGTCTAAGATCGGA-TCGGATC
130 TCATT-CCAGTCTAA-ACCCCAGTC-GATC
* * ** *
19643219 GAGAGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCAGACTGGTCCCCGGCTTGCCCATT
1 GAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGACTGATCCCCGGCTTGCCCATT
* * * * * *
19643284 TTGCCTCTTCGATCGGTTGAGCACCCGCACGCTCGTTTCGCGGGTTGGCTTAGGCATATGGAGTT
66 ATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
* *
19643349 CATTCTAAGTCTAAACCCCAGTCGAACC
131 CATTC-CAGTCTAAACCCCAGTCG-ATC
*
19643377 GAGGATTGTGGTAGCA
1 GAGGGTTGTGGTAGCA
19643393 ACACCAGTAG
Statistics
Matches: 262, Mismatches: 63, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 136 0.52
159 113 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGACTGATCCCCGGCTTGCCCATT
ATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCAGTCTAAACCCCAGTCGATC
Found at i:19643556 original size:26 final size:26
Alignment explanation
Indices: 19643520--19643572 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19643510 GTTGACTTAG
19643520 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
19643546 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19643572 G
1 G
19643573 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19643935 original size:26 final size:26
Alignment explanation
Indices: 19643887--19643939 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19643877 GTTGACTTAG
* *
19643887 GCATATGAAGTTCATCCTTAGTCTAA
1 GCATACGAAGTTCATCCTCAGTCTAA
19643913 GCATACGAAGTTCATTCC-CAGTCTAA
1 GCATACGAAGTTCA-TCCTCAGTCTAA
19643939 G
1 G
19643940 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAGTCTAA
Found at i:19644205 original size:158 final size:157
Alignment explanation
Indices: 19643913--19644254 Score: 456
Period size: 158 Copynumber: 2.2 Consensus size: 157
19643903 CTTAGTCTAA
* * * * *
19643913 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGTCTGAGGGTTGTGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGATCTGAGGGTTATGGCAACAGGATCAACA
* * *
19643978 GCACGCAAGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCT
66 ACACGCAAGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCC
*
19644043 GCACGCCCGTTTCGTGGGTTGGCTTAG
131 GCACGCCCGTTTCATGGGTTGGCTTAG
* ** *
19644070 GCATAGGGAGTTCATTCCCAGTCTAAGATTGGACTAGATC-GAGGGTTATGGCAGCAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGATCTGAGGGTTATGGCAACAGGATCAAC
* * * *
19644134 AACATGCAGGGGGGACCGGG-CTGATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCG
65 AACACGCA-AGGGGACCGGGTC-GATCCCTGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCG
*
19644198 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
*
19644228 GCTTACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
19644255 CATACGGAGT
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
157 61 0.38
158 100 0.62
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGATCTGAGGGTTATGGCAACAGGATCAACA
ACACGCAAGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCC
GCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:19644261 original size:26 final size:26
Alignment explanation
Indices: 19644231--19644280 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
19644221 GGCTTAGGCT
19644231 TACGGAGTTCATTC-CATGTCTAAGCA
1 TACGGAGTTCATTCTCA-GTCTAAGCA
19644257 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCTCAGTCTAAG
19644281 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCTCAGTCTAAGCA
Found at i:19644988 original size:26 final size:26
Alignment explanation
Indices: 19644949--19645001 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19644939 GTTGACTTAG
*
19644949 GCATACGGAATTCATCCCCCGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* *
19644975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
19645001 G
1 G
19645002 ATCGACTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:19645530 original size:26 final size:26
Alignment explanation
Indices: 19645494--19645546 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19645484 GTTGGCTTAG
19645494 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
19645520 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
19645546 G
1 G
19645547 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:19647125 original size:26 final size:26
Alignment explanation
Indices: 19647096--19647147 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19647086 GTTGACTTAG
19647096 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
19647122 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19647148 CATCGGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19647569 original size:157 final size:156
Alignment explanation
Indices: 19647122--19647621 Score: 519
Period size: 158 Copynumber: 3.2 Consensus size: 156
19647112 CCCAGTCTAA
* * *
19647122 GCATACAGAGTTCATTCCCA-GTCTAACATCGGACTGGACCGAGGGTTGTGGTAGTAAGATCGGT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAAGATCGGT
* * * *
19647186 AGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCACATTATGCCTC-TCCAGTCGGCTGAGTG
65 AGCACGCAGGGGGGACCGGGCCGATCCT-GGCTTGCGCATTATGCCTCTTCGA-TCGGCTGAGTG
19647250 CCCGCATGCCT-ATTTTGTGGGTTGGCTTAG
128 CCCGCA--CCTCATTTTGTGGGTTGGCTTAG
** * * ** * * * *
19647280 GCATAGGGAGTTCATTCCATGTGTAAG-CCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGC
1 GCATACAGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGGTAGCAAGATCGGT
** * * * * *
19647344 AGCACAAAGAAGGGGACCGAGCCGATTCCTGGCTTGCGCATTATGCCTCTCCG-CCGGCTCAGTG
65 AGCACGCAG-GGGGGACCGGGCCGA-TCCTGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGTG
**
19647408 CCCGCACACTCATTTTGTGGGTTAACTTAG
128 CCCGCAC-CTCATTTTGTGGGTTGGCTTAG
* * * **
19647438 GCATAC-GAATTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAAGATCAAT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAAGATCGGT
* * *
19647501 AGCACGCAGGGGGGACCGGGCCGATCCATGGCTTGCGCATTCTGCCTCTTCGATTGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCC-TGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGTGC
*
19647566 CCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCGCAC-CTCATTTTGTGGGTTGGCTTAG
*
19647595 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
19647622 CATACGGAGT
Statistics
Matches: 274, Mismatches: 55, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
155 3 0.01
156 36 0.13
157 93 0.34
158 108 0.39
159 29 0.11
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAAGATCGGTA
GCACGCAGGGGGGACCGGGCCGATCCTGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGTGCCC
GCACCTCATTTTGTGGGTTGGCTTAG
Found at i:19647631 original size:26 final size:26
Alignment explanation
Indices: 19647595--19647647 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19647585 GTTGGCTTAG
19647595 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19647621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19647647 G
1 G
19647648 GTCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19647776 original size:184 final size:183
Alignment explanation
Indices: 19647438--19647806 Score: 470
Period size: 184 Copynumber: 2.0 Consensus size: 183
19647428 GTTAACTTAG
*** * *
19647438 GCATACGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAAGATCAATAG
1 GCATACGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCAAGATCAACAA
* * *
19647503 CACGCAGGGGGGACCGGGCCGATCCATGGCTTGCGCATTCTGCCTCTTCGATTGGCTGAGCGCCC
66 CACGCAGGGGGGACCGGGCCGATCCATGACTTGCGCATTCTGCCTCTTCGATCGGCTGAACGCCC
* * * * * *
19647568 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 ACACACCCATTTCATGGATTGGCTTAGGCATACGGAGATCATTCCATGTCTAA
* * ** * * *
19647621 GCATACGGAGTTCATTCCCAGTCTAAGGTCGGACTGGACCGGGGGTTGCAACAGCAGGATCGACA
1 GCATAC-GAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCAAGATCAACA
* * * *
19647686 ACACGCATGGGGGATCGGTG-CGATCCCTGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAACGC
65 ACACGCAGGGGGGACCGG-GCCGATCCATGACTTGCGCATTCTGCCTCTTCGATCGGCTGAACGC
* *
19647750 CCACACACCCGTTTCATGGATTGGCTTAGGCATAGGGAGATCATTCCATGTCTAA
129 CCACACACCCATTTCATGGATTGGCTTAGGCATACGGAGATCATTCCATGTCTAA
19647805 GC
1 GC
19647807 CCAGCCGGAC
Statistics
Matches: 157, Mismatches: 27, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
183 6 0.04
184 150 0.96
185 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (183 bp):
GCATACGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCAAGATCAACAA
CACGCAGGGGGGACCGGGCCGATCCATGACTTGCGCATTCTGCCTCTTCGATCGGCTGAACGCCC
ACACACCCATTTCATGGATTGGCTTAGGCATACGGAGATCATTCCATGTCTAA
Found at i:19647972 original size:499 final size:498
Alignment explanation
Indices: 19647023--19648649 Score: 1947
Period size: 499 Copynumber: 3.3 Consensus size: 498
19647013 ACCACCCGTT
* * * * * * *
19647023 CGATCCCCGGCTTGCGCATCCTGCCTCTTTGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTC-TCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGT
* * * *
19647088 TGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAACATC
65 TGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC
** * * ** *
19647152 GGACTGGACCGAGGGTTGTGGTAGTAAGATCGGTAGCACGCAGGGGGGATCGG-GCCGATCCTCA
129 GGACTGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGTG-CGATCCTGA
* * * * * **
19647216 GCTTGCACATTATGCCTCTCCAGTCGGCTGAGTGCCCGCATGCCTATTTTGTGGGTTGGCTTAGG
193 -CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGG
* * * * *
19647281 CATAGGGAGTTCATTCCATGTGTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGCAG
257 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGCGGTAGCGGGACCGGCAG
* * * * *
19647346 CACAAAGAAGGGGACCGAGCCGATTCCTGGCTTGCGCATTATGCCTCTCCGCCGGCTCAGTGCCC
322 CACGAAGAGGGGGATCGGGCCGATTCCCGGCTTGCGCATTATGCCTCTCCGCCGGCTCAGTGCCC
* * * * * *
19647411 GCACACTCATTTTGTGGGTTAACTTAGGCATA-CGAATTCATTCCCAGTCTAAGATCGGACCAGA
387 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * *
19647475 CCGAGGGTTGTGGCAGCAAGATCAATAGCACGCAGGGGGGACCGGGC
452 CCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGAACGGGC
* * *
19647522 CGATCCATGGCTTGCGCATTCTGCCTCTTCGATTGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTC-TCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGT
* * * *
19647587 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGGTCG
65 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCG
* ** * *
19647652 GACTGGACCGGGGGTTGCAACAGCAGGATCGACAACACGCATGGGGGATCGGTGCGATCCCTGAC
130 GACTGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGTGCGAT-CCTGAC
* ** * * * *
19647717 TTGCGCATTCTGCCTCTTCGGTCGGCTGAACGCCCACACACCCGTTTCATGGATTGGCTTAGGCA
194 TTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCA
* * *
19647782 TAGGGAGATCATTCCATGTCTAAG-CCCAGCCGGACTGAGGGTTG-GGGAGCGGGACTGGCAGCA
259 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGCGGTAGCGGGACCGGCAGCA
* * * * *
19647845 TGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCTGTGCCCG
324 CGAAGAGGGGGATCGGGCCGATTCCCGGCTTGCGCATTATGCCTCTCCG-CCGGCTCAGTGCCCG
* * * *
19647910 TACGCTTGTTTCGAGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
388 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * *
19647975 CGAGGGTTGTAGCAGTAGGATCGACAGCACGCAGGGGGGATCGTGC
453 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGAACGGGC
** * * *
19648021 C-ATCCCTGGCTTATGCATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCGA-TCGGCTGAGCACCCGCACGCTCATTTCGTGGGT
* *
19648085 TCGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCG
65 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCG
* ** *
19648150 AACCAGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGACTGGGT-CGATCCTCGA
130 GACTGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGA-TCGGTGCGATCCT-GA
* * * *
19648214 CTTGCGCATTCTGCCTCTCCGGTAGGTTGAGTGCCCGTACGCCCATTTCATGGGTTGGCTTGGGC
193 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
* *
19648279 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-AAGCTGAGGGTTGCGGTAGCGGGACCGACAG
258 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CTGAGGGTTGCGGTAGCGGGACCGGCAG
* ** * ** *
19648343 CACGTAGAGGGGGATCGGGTTGATTCCCGGCTTGCGCATTATGCCTCTTCGGTAGGCTCAGCGCC
322 CACGAAGAGGGGGATCGGGCCGATTCCCGGCTTGCGCATTATGCCTC-TCCGCCGGCTCAGTGCC
* *
19648408 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGG
386 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAG
** * * * * * *
19648473 ATTGAGGATTGTGGCAGCAGGATTGACAGTACACAAGGGGGGAATGGGA
451 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC-AGGGGGGAACGGGC
* * * ** * *
19648522 CGATCCCCGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACCAGCACGCTCATTCCGTGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTC-GATCGGCTGAGCACCCGCACGCTCATTTCGTGGGT
* * * *
19648587 TGGTTTAGGCATACGGAGTTCATTACATGTCTAAGCATACAAAGTTCATTCCCAATCTAAGAT
65 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAT
19648650 TTTGAGCCAC
Statistics
Matches: 955, Mismatches: 158, Indels: 27
0.84 0.14 0.02
Matches are distributed among these distances:
497 62 0.06
498 296 0.31
499 322 0.34
500 154 0.16
501 14 0.01
502 107 0.11
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (498 bp):
CGATCCCTGGCTTGCGCATTCTGCCTCTCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGG
ACTGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGTGCGATCCTGACTT
GCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGCGGTAGCGGGACCGGCAGCACG
AAGAGGGGGATCGGGCCGATTCCCGGCTTGCGCATTATGCCTCTCCGCCGGCTCAGTGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
GGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGAACGGGC
Found at i:19648143 original size:26 final size:26
Alignment explanation
Indices: 19648093--19648145 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19648083 GTTCGCTTAG
*
19648093 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
19648119 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
19648145 G
1 G
19648146 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:19648501 original size:159 final size:157
Alignment explanation
Indices: 19648119--19648610 Score: 460
Period size: 159 Copynumber: 3.1 Consensus size: 157
19648109 CCATGTCTAA
* * *
19648119 GCATACGGAGTTCATTCCCAATCTAAGATC-GAACCAGACCGAGGGTTGTGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC-GACTGAGGGTTGTGGCAGCAGGATCGAC
* * * *
19648183 AGCACGCAGGGGGGA-CTGGGTCGA-TCCTCGACTTGCGCATTCTGCCTCTCCGGTAGGTTGAGT
64 AGCACGAAGGGGGGATC-GGGTCGATTCC-CGACTTGCGCATTCTGCCTCTTCGGTAGGCTGAGC
* * * *
19648246 GCCCGTACGCCCATTTCATGGGTTGGCTTGG
127 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * * *
19648277 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAAGCTGAGGGTTGCGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGA-CTGAGGGTTGTGGCAGCAGGATCGA
* * * * *
19648340 CAGCACGTAGAGGGGGATCGGGTTGATTCCCGGCTTGCGCATTATGCCTCTTCGGTAGGCTCAGC
63 CAGCACGAAG-GGGGGATCGGGTCGATTCCCGACTTGCGCATTCTGCCTCTTCGGTAGGCTGAGC
* *
19648405 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
19648436 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGATTGTGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGTGGCAGCAGGATCGACA
* * * **
19648501 GTACAC-AAGGGGGGAAT-GGGACGATCCCCGACTTGCGCATTCTACCTC-TCTGGCCGGCTGAG
65 G--CACGAAGGGGGG-ATCGGGTCGATTCCCGACTTGCGCATTCTGCCTCTTC-GGTAGGCTGAG
* * * *
19648563 CACCAGCACGCTCATTCCGTGGGTTGGTTTAG
126 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
19648595 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
19648611 ACATGTCTAA
Statistics
Matches: 267, Mismatches: 53, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 56 0.21
159 191 0.72
160 13 0.05
161 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACTGAGGGTTGTGGCAGCAGGATCGACAG
CACGAAGGGGGGATCGGGTCGATTCCCGACTTGCGCATTCTGCCTCTTCGGTAGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:19649846 original size:26 final size:26
Alignment explanation
Indices: 19649816--19649868 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19649806 GTTGGCTTAG
19649816 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
19649842 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19649868 G
1 G
19649869 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19651251 original size:881 final size:866
Alignment explanation
Indices: 19649292--19651261 Score: 2439
Period size: 869 Copynumber: 2.3 Consensus size: 866
19649282 GAGCACCCGC
* * * *
19649292 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
* * *
19649357 TTCCTAGTCTAAGATTAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGGAGGGA
66 TTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGGAGGGA
* ** * * *
19649422 CTGGTTGATCCCAGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCA
130 CGGGCCGATCCCAGGCTTGCGCATTCTACCTCTCCG-GCGACTGAGCGCCCGCACGCCCGTTTCG
*
19649487 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGTCGGTCTGAAGGTTGTGGC
194 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGTCGGTCTGAAGGTTGTGAC
* * * * *
19649552 AGCGGGACCGGTAGCGCACAATGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCT
259 AGCGGGACCGGTAGCGCACAATGAGGGACCGGACCGATCCCCGACTTACGCATTAAGCCTCTCCT
* * *
19649617 GCCTGCTCAACGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCAAGTC
324 GCCGGCTCAACGCCCGTACGCTCGTTTCATGGGTTGACCTAGGCATACGAAGTTCATTCCAAGTC
* * *
19649682 TAAGATTAGATCAGATCGAGGGTTGCAGTAACAGGATCGACAACATGTAAGGAGGATCGAGCTGG
389 TAAGATTAGATCAGACCGAGAGTTGCAGTAACAGGATCGACAACATGTAAGGAGGATCGAGCTGA
* **** * *
19649747 TCCTCGATTTTTTATTCTACCTCTCCGACCGATTGAACGCCCGATCGCTCGTTTCATGGGTTGGC
454 TCCCCGATTGCGCATTCTACCTCTCCGACAGATTGAACGCCCGAACGCTCGTTTCATGGGTTGGC
* *
19649812 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC
519 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACA
* * *
19649877 GGACCAACAGTTGTGGCAGTAGGACCAGCAGCAGGATCGACAGCAGGACCAACGGTCTCCGGCTT
584 GGACCAACAGTTGTGGCAGCAGGACCAGCAGCAGGATCGACAACAGGACCAACGGTCCCCGGCTT
* * * ** *
19649942 GCGCATTCTGCCTCTTTGACCGGCTGAGCACCTGCACGTTCGTTTCGTGGGTTGGCTTAGGGATA
649 ACGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTAGCTTAGGGATA
*
19650007 CGAAGTTCATTCCATGTCTAAGCCCCAACCCGATCGAGGGTTGTGACAGCAGGATCGACAGCGAG
714 CGAAGTTCATTCCATGTCTAACCCCCAACCCGATCGAGGGTTGTGACAGCAGGATCGACAGCGAG
* * * * ** *
19650072 ATCGGCAGCACACAGAGGGGGACAGACTGATCCCCGGCTTACGTATTATGCCTCTCCGGTCGGCT
779 ATAGGCAGCACACAGAAGGGAACAGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGTCAACC
* * *
19650137 TCTCCCGTCGGTTGAGCGTCCGT
844 TCTCCAGCCGGCTGAGCGTCCGT
* *
19650160 ACGCTCGTTTCGCGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCA
1 ACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
* * * ** *
19650225 TTTCCAGTCTAAGATC-GAACCGGACTGAGAGTTACGGTAGCAGGATCGATAGCACGCATGAGGG
66 TTCCCAGTCTAAGATCAG-ACCGGAC-GAGGGTTACGGCAGCAGGATCGGCAGCACGCAGGAGGG
* * * * *
19650289 TTCGAGCCGATCCCCGGCTTGCGCATTCTACATCTCCGGCAGGCTGAGCGCCCGCACGCCCGTTT
129 -ACGGGCCGATCCCAGGCTTGCGCATTCTACCTCTCCGGC-GACTGAGCGCCCGCACGCCCGTTT
*
19650354 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGTCGGTCTGAGGGTTGTG
192 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGTCGGTCTGAAGGTTGTG
* * *
19650419 ACAGCGGGACCGGTAGCATGCA-GA-GAGGGACCGGATCGATCCTCGACTTACGCATTAAGCCTC
257 ACAGCGGGACCGGTAGC--GCACAATGAGGGACCGGACCGATCCCCGACTTACGCATTAAGCCTC
* * *
19650482 T-CTGGCCGGCTCAGCGCCTGTACGCTCGTTTGATGGGTTGACCTAGGCATAC-AGAGTTCATTC
320 TCCT-GCCGGCTCAACGCCCGTACGCTCGTTTCATGGGTTGACCTAGGCATACGA-AGTTCATTC
* * * * * *
19650545 CCAGTCTAAGATTGGATCGGACCGAGAGTTGCAGTAGCAGGATTGACAGCATGTAGAGG-GGATC
383 CAAGTCTAAGATTAGATCAGACCGAGAGTTGCAGTAACAGGATCGACAACATGTA-AGGAGGATC
* * * * *
19650609 G-GGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCAG-TTGAACGCCTGAACGCTCGTTTC
447 GAGCT-GATCCCC-GATTGCGCATTCTACCTCTCC-GACAGATTGAACGCCCGAACGCTCGTTTC
* * *
19650672 GTGGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTGTA
509 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* **
19650737 AGATC-GAACAGGACCAACAGTTGTGGCAGCAGGACCAGCAGTAGGATCGATAGCACACAGGGGG
574 AGATCAG-ACAGGACCAACAGTTGTGGCAGCAGGACCAGCAGCAGGATCG--A-CA-ACA-GGAC
* * * * *
19650801 GATCGGGTCGAGCCCCGGCTTACGCATTCTGCCTCTTCGATCGGTTGAGCACCCGCACACTCTTT
633 CAAC-GGT----CCCCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACACTCGTT
* *
19650866 TCGTGGGTTAGCTTAGGGATACGAAGTTCATTCCATGTCTAACCCCCAGCCCTGCT-GAGGGTTG
693 TCGTGGGTTAGCTTAGGGATACGAAGTTCATTCCATGTCTAACCCCCAACCC-GATCGAGGGTTG
* * * * * * * ** **
19650930 TGGCAGCAGGATCGGCAGTGGGATAGGCAGCTCGCAGAAGGGAACCGGGTTGATCCCCGGCTTGT
757 TGACAGCAGGATCGACAGCGAGATAGGCAGCACACAGAAGGGAA-CAGACTGATCCCCGGCTTAC
*
19650995 GCATTATGCCTCTCCGGTCAACCTCTCCAGCCGGCTGAGCGTTCGT
821 GCATTATGCCTCTCCGGTCAACCTCTCCAGCCGGCTGAGCGTCCGT
* * *
19651041 ACGCTCGTTTCACGGGTTGGCTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
1 ACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
* * * * *
19651106 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATTGGCAGCATGCAGGGGGGA
66 TTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGGAGGGA
* * * *** **
19651171 CCGGGCCGATCCCTGGCTTGCGCATCCTACCTCTCTGGTCGACTGAGCGCGTACACGGTCGTTTC
130 -CGGGCCGATCCCAGGCTTGCGCATTCTACCTCTCCGG-CGACTGAGCGCCCGCACGCCCGTTTC
* * *
19651236 GTTGGTTGACTTAGGCATACGGAGTT
193 GTGGGTTGGCTTAGGCATAGGGAGTT
19651262 TATCCCTAGT
Statistics
Matches: 932, Mismatches: 141, Indels: 45
0.83 0.13 0.04
Matches are distributed among these distances:
867 2 0.00
868 116 0.12
869 274 0.29
870 145 0.16
871 6 0.01
872 1 0.00
873 2 0.00
874 2 0.00
875 4 0.00
876 3 0.00
880 136 0.15
881 238 0.26
882 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (866 bp):
ACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATCAGACCGGACGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGGAGGGAC
GGGCCGATCCCAGGCTTGCGCATTCTACCTCTCCGGCGACTGAGCGCCCGCACGCCCGTTTCGTG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGTCGGTCTGAAGGTTGTGACAG
CGGGACCGGTAGCGCACAATGAGGGACCGGACCGATCCCCGACTTACGCATTAAGCCTCTCCTGC
CGGCTCAACGCCCGTACGCTCGTTTCATGGGTTGACCTAGGCATACGAAGTTCATTCCAAGTCTA
AGATTAGATCAGACCGAGAGTTGCAGTAACAGGATCGACAACATGTAAGGAGGATCGAGCTGATC
CCCGATTGCGCATTCTACCTCTCCGACAGATTGAACGCCCGAACGCTCGTTTCATGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGG
ACCAACAGTTGTGGCAGCAGGACCAGCAGCAGGATCGACAACAGGACCAACGGTCCCCGGCTTAC
GCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTAGCTTAGGGATACG
AAGTTCATTCCATGTCTAACCCCCAACCCGATCGAGGGTTGTGACAGCAGGATCGACAGCGAGAT
AGGCAGCACACAGAAGGGAACAGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGTCAACCTC
TCCAGCCGGCTGAGCGTCCGT
Found at i:19651364 original size:184 final size:184
Alignment explanation
Indices: 19651055--19651391 Score: 431
Period size: 184 Copynumber: 1.8 Consensus size: 184
19651045 TCGTTTCACG
* *
19651055 GGTTGGCTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGA
* * * *** * * *
19651120 TCAGACCGGATCGAGGGTTGCGACAGCAGGATTGGCAGCATGCAGGGGGGACCGGGCCGATCCCT
66 TCAGACCGAACCGAGGGTTACGACAGCAGGAACAGCAGCACGCAGGGGGGACCAGGCCGATCCCC
* *
19651185 GGCTTGCGCATCCTACCTCTCTGGTCGACTGAGCGCGTACACGGTCGTTTCGTT
131 AGCTTACGCATCCTACCTCTCTGGTCGACTGAGCGCGTACACGGTCGTTTCGTT
* * * **
19651239 GGTTGACTTAGGCATACGGAGTTTATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCCAAGA
1 GGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGA
* * ** * * *
19651304 TCGGATCGAACCGAGGGTTACGGTAGTAGGAACAGCAGCACGCATGGGGGATCAGGCCGATCCCC
66 TCAGACCGAACCGAGGGTTACGACAGCAGGAACAGCAGCACGCAGGGGGGACCAGGCCGATCCCC
* *
19651369 AGCTTACGCATTCTGCCTCTCTG
131 AGCTTACGCATCCTACCTCTCTG
19651392 ACTGATTGAG
Statistics
Matches: 126, Mismatches: 27, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
184 126 1.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (184 bp):
GGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGA
TCAGACCGAACCGAGGGTTACGACAGCAGGAACAGCAGCACGCAGGGGGGACCAGGCCGATCCCC
AGCTTACGCATCCTACCTCTCTGGTCGACTGAGCGCGTACACGGTCGTTTCGTT
Found at i:19651460 original size:184 final size:184
Alignment explanation
Indices: 19651041--19651461 Score: 418
Period size: 184 Copynumber: 2.3 Consensus size: 184
19651031 GAGCGTTCGT
* *
19651041 ACGCTCGTTTCACGGGTTGGCTTAGGCATAAGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTC
* * * * *** *
19651105 ATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATTGGCAGCATGCAGGGGGG
65 ATTCCCAGTCCAAGATCAGACCGAACCGAGGGTTACGACAGCAGGAACAGCAGCACGCAGGGGGG
* ** * * *
19651170 ACCGGGCCGATCCCTGGCTTGCGCATCCTACCTCTCTGGTCGACTGAGCGCGTAC
130 ACCAGGCCGATCCCCAGCTTACGCATCCTACCTCTCTGCTCGACTGAGCGCCTAC
* * * * * * * **
19651225 ACGGTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTTA-TCCCTAGTCTAAGCATATGGAGTTC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT-GTCTAAGCATACAGAGTTC
* * ** * *
19651289 ATTCCCAGTCCAAGATCGGATCGAACCGAGGGTTACGGTAGTAGGAACAGCAGCACGCATGGGGG
65 ATTCCCAGTCCAAGATCAGACCGAACCGAGGGTTACGACAGCAGGAACAGCAGCACGCAGGGGGG
* * * * * *
19651354 ATCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCTGACT-GATTGAGTGCCTGC
130 ACCAGGCCGATCCCCAGCTTACGCATCCTACCTCTCTG-CTCGACTGAGCGCCTAC
* * *
19651409 ACGC-CTGTTTTATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGC
1 ACGCTC-GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
19651462 CCTAGCCAAA
Statistics
Matches: 186, Mismatches: 46, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
182 2 0.01
183 1 0.01
184 178 0.96
185 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
TTCCCAGTCCAAGATCAGACCGAACCGAGGGTTACGACAGCAGGAACAGCAGCACGCAGGGGGGA
CCAGGCCGATCCCCAGCTTACGCATCCTACCTCTCTGCTCGACTGAGCGCCTAC
Found at i:19652519 original size:26 final size:26
Alignment explanation
Indices: 19652471--19652521 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19652461 TTGACTTAGG
*
19652471 CATACAGAGTTCATCACCTGTCTAAC
1 CATACAGAGTTCATCACCAGTCTAAC
*
19652497 CATACGGAGTTCATTC-CCAGTCTAA
1 CATACAGAGTTCA-TCACCAGTCTAA
19652522 GATCGGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCACCAGTCTAAC
Done.