Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 181 of 402
Found at i:19652836 original size:158 final size:158
Alignment explanation
Indices: 19652497--19652836 Score: 355
Period size: 158 Copynumber: 2.2 Consensus size: 158
19652487 CCTGTCTAAC
* * * * * *
19652497 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGCAGCAAGATCGGCAG
1 CATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGATCGAGGGTTGTGGCAGCAAGACCAGCAA
* * * * * * * * * *
19652562 CACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCCGATTGAGCGCCC
66 CACGCAAGGGGGATCGGGGCAATCCCCGACTTGCGCATTATGCCTATCCGACCGACTCAGCACCC
* * *
19652627 GCACACCCGTTTTATGGGTTGGCTTGGG
131 GCACACCCGTTTCATGGGTTGACTTAGG
** * * *
19652655 CATTGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGTC-GGACCAT
1 CATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGATCGAGGGTTGTGGCAG-CAAGACCAG
*
19652717 CAACACGCAAAGGGGGATCGGGGCAATCCCCGACTTGCGCATTATGCCTAT-CGACCGGCTCAGC
63 CAACACGC-AAGGGGGATCGGGGCAATCCCCGACTTGCGCATTATGCCTATCCGACCGACTCAGC
* * * *
19652781 ACCCGTACGCTCGTTTCATGGGTTGACTTATG
127 ACCCGCACACCCGTTTCATGGGTTGACTTAGG
19652813 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
19652837 TGATTAGCCC
Statistics
Matches: 146, Mismatches: 31, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.02
158 101 0.69
159 42 0.29
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGATCGAGGGTTGTGGCAGCAAGACCAGCAA
CACGCAAGGGGGATCGGGGCAATCCCCGACTTGCGCATTATGCCTATCCGACCGACTCAGCACCC
GCACACCCGTTTCATGGGTTGACTTAGG
Found at i:19653000 original size:26 final size:26
Alignment explanation
Indices: 19652971--19653023 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19652961 GTTCGCTTAG
19652971 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
19652997 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
19653023 G
1 G
19653024 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:19654111 original size:159 final size:158
Alignment explanation
Indices: 19653730--19654113 Score: 400
Period size: 159 Copynumber: 2.4 Consensus size: 158
19653720 CCTAGTCTAA
* * *
19653730 GCATACGGAGTTCATTCCCAGTCCAAGATCAGA-TCGAATCGAGGGTTGTGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACT-GAGGGTTGTGACAGTAGGATCGAC
* * * * * *
19653794 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCGGCCTCTTCGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCAACTTACGCATTCGGCCTCTCCGACCGGCTCAGCGC
* * * *
19653859 CCGCACGCCCGTTTTGTGGGTTGGCTTAG
130 CCGCACGCCCATTTCGTGGGTTGACTCAG
* ** * * * * *
19653888 TCATA-GGTAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGACCG
1 GCATACGG-AGTTCATTCCCA-GTCTAAG-ATCAGATTGGACTGAGGGTTGTGACAGTAGGATCG
*
19653950 ACAGCACGCAGAGGGGGACCGAGCCGATCCTCAACTTACGCATTAC-GCCTCTCCGACCGGCTCA
63 ACAGCACGCAG-GGGGGACCGAGCCGATCCCCAACTTACGCATT-CGGCCTCTCCGACCGGCTCA
* * *
19654014 GCGCCTGCATGCTCATTTCGTGGGTTGACTCAG
126 GCGCCCGCACGCCCATTTCGTGGGTTGACTCAG
* * ** * *
19654047 GCATACAGAGTTCATTCCCAGTCTACGATCAGATTGGACTGAGGGTTACGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGTGACAGTAGGATCGACA
19654112 GC
66 GC
19654114 TCACAGGAGA
Statistics
Matches: 178, Mismatches: 39, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.03
158 51 0.29
159 117 0.66
160 5 0.03
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGTGACAGTAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCAACTTACGCATTCGGCCTCTCCGACCGGCTCAGCGCC
CGCACGCCCATTTCGTGGGTTGACTCAG
Found at i:19654242 original size:26 final size:26
Alignment explanation
Indices: 19654206--19654258 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19654196 CTTGGCTTAG
*
19654206 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
19654232 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19654258 G
1 G
19654259 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19654604 original size:25 final size:26
Alignment explanation
Indices: 19654575--19654626 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
19654565 GTTGACGTAG
19654575 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19654600 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19654626 G
1 G
19654627 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19654957 original size:159 final size:158
Alignment explanation
Indices: 19654607--19655092 Score: 382
Period size: 158 Copynumber: 3.1 Consensus size: 158
19654597 TAAGCATATG
* * ** * **
19654607 GAGTTCATTCCTAGTCTAAGATCGAATTGGACCAAGGGTTGCGGCAGCAGGATCGGTAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
* * * * * * * * *
19654672 GGGGGGATCGGGCTGATCCTCGACTTACGTATTCTACCTCTCCGGCCGGTTGAGCACCTGCACGC
66 GGGGGGACCGAGCTGATCCTCGACTTACGCATTATACCTCTCCGACCGGCTCAACACCTGAACGC
* * * **
19654737 CCGTTTCATGGGTTGGCTTAGGCACAGG
131 CCATTTCATGGGTTGACTTAGGCAAACA
** * * * *
19654765 GAGTTCATT-CCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGT
1 GAGTTCATTCCCA-GTCTAAGATCGAACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGT
* ** * **
19654829 AGAGGGGGACCGAGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAATGCCTGAAC
65 AG-GGGGGACCGAGCTGATCCTCGACTTACGCATTATACCTCTCCGACCGGCTCAACACCTGAAC
* *
19654894 GCTCATTTCGTGGGTTGACTTAGGCAAACA
129 GCCCATTTCATGGGTTGACTTAGGCAAACA
** * * **
19654924 GAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAAGGTTGTGGCAGCAAGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
* ** * * * ** * * * ** * * * *
19654989 GGAGGGATTGGGCCGATCCCCGACTTTTGCATTCTGCCTCTCAGGTCAGCTGAGCACC-CACACG
66 GGGGGGACCGAGCTGATCCTCGACTTACGCATTATACCTCTCCGACCGGCTCAACACCTGA-ACG
* * *
19655053 CTCATTTCATGGGTTGGCTTAGGCATACA
130 CCCATTTCATGGGTTGACTTAGGCAAACA
19655082 GAGTTCATTCC
1 GAGTTCATTCC
19655093 ATTTCTAAGC
Statistics
Matches: 256, Mismatches: 68, Indels: 8
0.77 0.20 0.02
Matches are distributed among these distances:
157 3 0.01
158 130 0.51
159 120 0.47
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
GGGGGGACCGAGCTGATCCTCGACTTACGCATTATACCTCTCCGACCGGCTCAACACCTGAACGC
CCATTTCATGGGTTGACTTAGGCAAACA
Found at i:19655506 original size:26 final size:26
Alignment explanation
Indices: 19655457--19655507 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19655447 TTGACTTAGG
*
19655457 CATATAGAGTTCATCCCTAGTCTAAA
1 CATATAGAGTTCATCCCTAATCTAAA
*
19655483 CATATGGAGTTCATTCCC-AATCTAA
1 CATATAGAGTTCA-TCCCTAATCTAA
19655508 GATCGGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (26 bp):
CATATAGAGTTCATCCCTAATCTAAA
Found at i:19655706 original size:882 final size:866
Alignment explanation
Indices: 19653667--19655666 Score: 2289
Period size: 870 Copynumber: 2.3 Consensus size: 866
19653657 TTCTGGTCGA
* *
19653667 CTGAGCGCGCGCACGCTTGTTTCATGGGTTGACTTAGCCATACGGAGTTCATCCCTAGTCTAAGC
1 CTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
* * * * *
19653732 ATACGGAGTTCATTCCCAGTCCAAGATCAGATCGAATCGAGGGTTGTGACAGTAGGATCGACAGC
66 ATATGGAGTTCATTCCCAGTCTAAGATCGGATCG-ATCGAGGGTTGCGACAGTAGGATCGATAGC
* * * * * * *
19653797 ACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCGGCCTCTTCGGCCGGCTGAGCGCCCG
130 ACGTAGGGGGGACTGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCC-GCTTA-AGCCCG
* * *
19653862 CACGCCCGTTTTGTGGGTTGGCTTAGTCATAGGTAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
193 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTCTAAGCCCCACT-GGAC
*
19653927 CGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAACTTACGCA
256 CGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAACTTACGCA
* * * *
19653992 TTACGCCTCTCCGACCGGCTCAGCGCCTGCATGCTCATTTCGTGGGTTGACTCAGGCATACAGAG
321 TTACGCCTCTCCGACCGGCTCAACGCCTGAACGCTCATTTCGTGGGTTGACTCAGGCAAACAGAG
* *** * *
19654057 TTCATTCCCAGTCTACGATCAGATTGGACTGAGGGTTACGACAGCAAGATCGACAGCTCACAGGA
386 TTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTACGACAGCAAGATCGACAGCACACAGGA
* * * **
19654122 GAGGATTGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCAGCCAGTTGAGTGCCCACACGCTC
451 GAGGATTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCAGCTGAGCACCCACACGCTC
* *
19654187 GTTTTATGGCTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCA
516 ATTTCATGGCTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCA
* * * *
19654252 GTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGACAGTATGCAGGGGGGACCGGGC
581 GTCTAAGATCAGACCGGACCGAGGGTTAAGACAGTAGGATCAACAGCACGCAGGGGGGACCGGGC
* * ** * * *
19654317 TGATCCTTGACTTGCACATTCTGCCTTTCCAACCGGTTGAGCGCCCGCACGCTCGTTTCTTGGGT
646 TGATCCCTGACTTGCACATTCTGCCTCTCCAACCGCCTCAGCGCCCGCACGCTCATTTCGTGGGT
* * * * *
19654382 TGACTTAGGTAGACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCTAGTGTTGTGGTAGCAG
711 TGACTTAGGCAGACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGTGTTGTGGCAACAG
*** * *
19654447 GACTGGTAGCGAGATCGACAGAACACAAAAAGGGGATTGGGTTGATCCCAGAATTGTGCATTATG
776 GACTAACAGCGAGATCGACAGAACACAAAAAGGGGATCGGGTAGATCCCAGAATTGTGCATTATG
* * *
19654512 CCTCTCCTGTCGGCCTCTCCGGCTGG
841 CCTCTCCGGTCGACCTCTCCGGCCGG
* *
19654538 CTGAGCGCCCGCACGCTTGTTTCATAGGTTGACGTAGGCATACGGAGTTCATCCC-AGTCTAAGC
1 CTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
* * * * * * * *
19654602 ATATGGAGTTCATTCCTAGTCTAAGATCGAATTGGACCAAGGGTTGCGGCAGCAGGATCGGTAGC
66 ATATGGAGTTCATTCCCAGTCTAAGATCGGA-TCGATCGAGGGTTGCGACAGTAGGATCGATAGC
* * * * * *
19654667 ACGTAGGGGGGA-TCGGGCTGATCCTCGACTTACGTATTCTACCTCTCCGGCCGGTTGAGCACCT
130 ACGTAGGGGGGACT-GGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGCTTAAGC-CC-
* *
19654731 GCACGCCCGTTTCATGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA
192 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCA-CTGGA
* * * ** **
19654796 CTGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGAGCTGATCCTCGGCTTGTGC
255 CCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAACTTACGC
* * *
19654861 ATTATGCCTCTCCGACCGGCTCAATGCCTGAACGCTCATTTCGTGGGTTGACTTAGGCAAACAGA
320 ATTACGCCTCTCCGACCGGCTCAACGCCTGAACGCTCATTTCGTGGGTTGACTCAGGCAAACAGA
** *
19654926 GTTCATTCCCAGTCTAAGATC-GAACCAGACTGAAGGTTGTGGCAGCAAGATCGACAGCACACAG
385 GTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAAGGTTACGACAGCAAGATCGACAGCACACAG
** *
19654990 GAG-GGATTGGGCCGATCCCCGACTTTTGCATTCTGCCTCT-CAGGTCAGCTGAGCACCCACACG
449 GAGAGGATTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCA-GCCAGCTGAGCACCCACACG
* * ***
19655053 CTCATTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATTTCTAAGCATATGGAGTTCATT
513 CTCATTTCATGGCTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCATACAAAGTTCATT
* * *
19655117 CCCCGTCTAAGATCAGATCGGATCGAGGGTTGCAGAAGTAAGACCAGTAGCAGGATCAACAGCAC
577 CCCAGTCTAAGATCAGACCGGACCGAGGG-T-------TAAGA-CAGT---AGGATCAACAGCAC
** * * ** * *
19655182 GCAGGGGGAGATTGGG-TCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCAGCCTCTTC-TCT
630 GCAGGGGG-GACCGGGCT-GATCCCTGACTTGCACATTCTGCCTCTCCAACC-GCCTCAGCGCCC
* * * *
19655245 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAACCGGA
692 GCACGCTCATTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
* * * * * *
19655310 CCGAAG-GTTGTTGCAACAGGACTAACAGCGGGATCGACAGCACGCAGAGA-GGGATCGGGTAGA
757 CC-AAGTGTTGTGGCAACAGGACTAACAGCGAGATCGACAGAACACAAAAAGGGGATCGGGTAGA
* * * *
19655373 TCCCCAG-CTTGTGCATTATGGCTCTTCGG-CTGACCTCTCTGGCCGG
821 T-CCCAGAATTGTGCATTATGCCTCTCCGGTC-GACCTCTCCGGCCGG
* * ** ** *
19655419 TTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCTAGTCTAAAC
1 CTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
* *
19655484 ATATGGAGTTCATTCCCAATCTAAGATCGGACCAGATCGAGGGTTGCGACAGTAGGATCGATAGC
66 ATATGGAGTTCATTCCCAGTCTAAGATCGGATC-GATCGAGGGTTGCGACAGTAGGATCGATAGC
* * * * *
19655549 ACATAGGGGGGACTGGACCGATCCTCGGCTTGCGCATTTTGCCTCTCCAGCCAGCTTAATGCCCG
130 ACGTAGGGGGGACTGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCC-GCTTAA-GCCCG
* * * * * *
19655614 AACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
193 CACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAG
19655667 ATCGGACTGG
Statistics
Matches: 934, Mismatches: 162, Indels: 55
0.81 0.14 0.05
Matches are distributed among these distances:
868 5 0.01
869 135 0.14
870 327 0.35
871 56 0.06
877 4 0.00
878 4 0.00
880 1 0.00
881 109 0.12
882 276 0.30
883 15 0.02
884 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (866 bp):
CTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGATCGAGGGTTGCGACAGTAGGATCGATAGCA
CGTAGGGGGGACTGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGCTTAAGCCCGCAC
GCCCGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCACTGGACCGAGG
GTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAACTTACGCATTACG
CCTCTCCGACCGGCTCAACGCCTGAACGCTCATTTCGTGGGTTGACTCAGGCAAACAGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACTGAAGGTTACGACAGCAAGATCGACAGCACACAGGAGAGGA
TTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCAGCTGAGCACCCACACGCTCATTTC
ATGGCTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTA
AGATCAGACCGGACCGAGGGTTAAGACAGTAGGATCAACAGCACGCAGGGGGGACCGGGCTGATC
CCTGACTTGCACATTCTGCCTCTCCAACCGCCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACT
TAGGCAGACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGTGTTGTGGCAACAGGACTA
ACAGCGAGATCGACAGAACACAAAAAGGGGATCGGGTAGATCCCAGAATTGTGCATTATGCCTCT
CCGGTCGACCTCTCCGGCCGG
Found at i:19655828 original size:26 final size:26
Alignment explanation
Indices: 19655798--19655850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19655788 GTTGGCTGAG
*
19655798 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
19655824 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
19655850 G
1 G
19655851 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:19661411 original size:8 final size:8
Alignment explanation
Indices: 19661400--19661437 Score: 76
Period size: 8 Copynumber: 4.8 Consensus size: 8
19661390 GCACATGACC
19661400 TCATGCCA
1 TCATGCCA
19661408 TCATGCCA
1 TCATGCCA
19661416 TCATGCCA
1 TCATGCCA
19661424 TCATGCCA
1 TCATGCCA
19661432 TCATGC
1 TCATGC
19661438 AAGGTTAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.24, C:0.37, G:0.13, T:0.26
Consensus pattern (8 bp):
TCATGCCA
Found at i:19662936 original size:26 final size:26
Alignment explanation
Indices: 19662906--19662958 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19662896 GTTGACTTAG
19662906 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19662932 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19662958 G
1 G
19662959 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19663247 original size:158 final size:158
Alignment explanation
Indices: 19663071--19663433 Score: 428
Period size: 158 Copynumber: 2.3 Consensus size: 158
19663061 TCGGACACCA
*
19663071 GTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGA-ACCGAGGG
* * * * * * *
19663134 TTGTGGCAGTAGGACCGACAGCACG-CAGAGGCAGACCGGGTCGATCCCTGGCTTGTGCATTATG
65 TTGCGACAGTAGGACCGACAACACGTAAGAGG--GACCGGGTCGATCCCCGGCTTATGCATTATA
* ** *
19663198 CCTCTTCGACCGACTCAGTGCCCGCACGCTC
128 CCTCTCCGACCGACTCAGCACCCGCACACTC
* * **
19663229 GTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAAGCCGAACCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAGCCGAACCGAGGG
* * ** *
19663293 TTGCGATAGTAGGATCGACAACACGTAAGAGGGATTGGGTCGATCCCCGGCTTATGCATTCTACC
65 TTGCGACAGTAGGACCGACAACACGTAAGAGGGACCGGGTCGATCCCCGGCTTATGCATTATACC
* * * *
19663358 TCTCCGACCGACTGAGCATCGGTACACTC
130 TCTCCGACCGACTCAGCACCCGCACACTC
*
19663387 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
19663434 ATATGGGGTT
Statistics
Matches: 171, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 109 0.64
159 50 0.29
160 9 0.05
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGAACCGAGGGT
TGCGACAGTAGGACCGACAACACGTAAGAGGGACCGGGTCGATCCCCGGCTTATGCATTATACCT
CTCCGACCGACTCAGCACCCGCACACTC
Found at i:19663809 original size:26 final size:26
Alignment explanation
Indices: 19663773--19663825 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19663763 GTTGACTTAG
19663773 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19663799 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19663825 G
1 G
19663826 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19664170 original size:159 final size:158
Alignment explanation
Indices: 19663799--19664300 Score: 391
Period size: 158 Copynumber: 3.2 Consensus size: 158
19663789 CCCAGTCTAA
* * ** **
19663799 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTCGGGCAATAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTATGGCAGCAGGATCGACA
* * * * * * **
19663864 GCACGTAGGGGCGACCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCTGGCCGGCTAAGTGCC
66 GCACATAGGGGCGACCGGGCCGATCCTCGACTTACACATTATGCCTCTCCGACCGGCTAAGCACC
* * * *
19663929 TGCACGCCCGTTTCATGGGTTGGCTTAG
131 CGAACGCCCATTTCATGGGTTGACTTAG
* ** * * * * * * *
19663957 GCATAAGGAGTTCATTCC-ATGTCTAAGCCCTAGTCGGGCT-GAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATTGGACCGGATCGAGGGTTATGGCAGCAGGATCGA
* * * * *
19664020 CAGCACATAGAGGGGGATCGGGCCGATCCTCGACTTACGCATTATGCCTTTCCGACCGGCTCAGC
64 CAGCACATAG-GGGCGACCGGGCCGATCCTCGACTTACACATTATGCCTCTCCGACCGGCTAAGC
* *
19664085 ACCCGAACGCTCATTTCATGGGTTGACTTAT
128 ACCCGAACGCCCATTTCATGGGTTGACTTAG
* * * * *
19664116 GCATACGAAGTTCATTCCTAGTCTAAGATTGGACCAGATCGAGGGTTATAGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTATGGCAGCAGGATCGACA
** * ** * ** * * * * * * *
19664181 GCACGCAGGGAG-GACCAGATCGGTCCTTAATTTACGCATTCTGCCTCTCCCATCGACTGAGCAC
66 GCACATAGGG-GCGACCGGGCCGATCCTCGACTTACACATTATGCCTCTCCGACCGGCTAAGCAC
* * * * *
19664245 CCGCACGCTCATTTCGTGGGCTGGCTTAG
130 CCGAACGCCCATTTCATGGGTTGACTTAG
19664274 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
19664301 TATGTGGAGT
Statistics
Matches: 266, Mismatches: 71, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 2 0.01
158 143 0.54
159 120 0.45
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTATGGCAGCAGGATCGACA
GCACATAGGGGCGACCGGGCCGATCCTCGACTTACACATTATGCCTCTCCGACCGGCTAAGCACC
CGAACGCCCATTTCATGGGTTGACTTAG
Found at i:19665025 original size:316 final size:317
Alignment explanation
Indices: 19664363--19665129 Score: 898
Period size: 316 Copynumber: 2.4 Consensus size: 317
19664353 GCAAGACCAG
* * * * * * * * * *
19664363 CAGCAAGATCGACAACACGCAAGGGGGGACCGGGTCAATCCCCGGCTTACGCATTCCACC-TCTC
1 CAGCAGGATCGACAGCACGCAA-GGGGGACTGGGCCGATCGCCGGCTTGCACATTCTACCTTTTC
** * * * *
19664427 AGGCCGGTTGAGCACCCGCATGCCCGTTTCTTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATG
65 -GATCGGCTGAGCACCCGCATGCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * ** *
19664492 TCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCGGGACCGAAAGCACTCAGAGGGGGACCGGGT
129 TCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAACAAGACCGAAAGCACGCAGAGGGGGACCGGGT
*
19664557 CGATCCCTGACTTGCGCATTATGCCTCTCCAACTGGCTCAGCACCCGAACGCTCATTTCATGGGT
194 CGATCCCTGACTTGCGCATTATGCCTCTCCAACTGGCTCAGCACCCGAACGCTCATTCCATGGGT
* * * *
19664622 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCGGATCGAGGGTTGCGG
259 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
* * * *
19664681 CAGCAGGATCGACAGCACGTAGGGGGGACTGGGCCGGTC-CTC-GCTTGCACATTCTACGTTTTC
1 CAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCGC-CGGCTTGCACATTCTACCTTTTC
* *
19664744 GATCGGCTGAGCGCCCGCATGCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATAT
65 GATCGGCTGAGCACCCGCATGCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * * **
19664809 CTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAAGACTGATAGTAGGCAGAGGGGGATTGGGTC
130 CTAAGCCCCAGCCAGACCGAAGGTTGTGGCAACAAGACCGAAAGCACGCAGAGGGGGACCGGGTC
* ** ** * *
19664874 GAT-CCTCGGCTTGCGCATTATGCCTCTCC-GGTCGGCTCAGTGCCCGCACGCTCATTCCGTGGG
195 GATCCCT-GACTTGCGCATTATGCCTCTCCAACT-GGCTCAGCACCCGAACGCTCATTCCATGGG
* * *
19664937 TTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGA
258 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
* * * **
19664997 TAGCAGGATCGACATCATGCAAGGGGGACTGGGCCGATCGCCGGCTTGTGCATTCTACCTTTTCG
1 CAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCGCCGGCTTGCACATTCTACCTTTTCG
* * * * * *
19665062 ATCGGCTGAGCACCCAG-ACGTTCATTTCGTGGGTTGGATTTGGCATACGGGGTTCATTCCATGT
66 ATCGGCTGAGCACCC-GCATGCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
19665126 CTAA
130 CTAA
19665130 CCATACGAAA
Statistics
Matches: 377, Mismatches: 65, Indels: 15
0.82 0.14 0.03
Matches are distributed among these distances:
315 4 0.01
316 259 0.69
317 95 0.25
318 19 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
CAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCGCCGGCTTGCACATTCTACCTTTTCG
ATCGGCTGAGCACCCGCATGCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCCAGACCGAAGGTTGTGGCAACAAGACCGAAAGCACGCAGAGGGGGACCGGGTCG
ATCCCTGACTTGCGCATTATGCCTCTCCAACTGGCTCAGCACCCGAACGCTCATTCCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
Found at i:19665107 original size:158 final size:158
Alignment explanation
Indices: 19664362--19665129 Score: 556
Period size: 159 Copynumber: 4.8 Consensus size: 158
19664352 AGCAAGACCA
* * * * * * * * *
19664362 GCAGCAAGATCGACAACACGCAAGGGGGGACCGGGTCAATCCCCGGCTTACGCATTCCACC-TCT
1 GCAGCAGGATCGACATCACGCAA-GGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTACCTTTT
** * * * * * * * *
19664426 CAGGCCGGTTGAGCACCCGCATGCCCGTTTCTTGGGTTGGCTTAGGCATAAGGAGTTCATTCC-A
65 C-GATCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA
* * * * *
19664490 TGTCTAAG-CCCCAGCCGGACCGAAGGTTGTG
129 -GTCTAAGATCACA-CCAGACCGAGGGTTGCG
* * * * * * * * * * *
19664521 GCAGCGGGACCGAAAGCACTCAGAGGGGGACCGGGTCGATCC-CTGACTTGCGCATTATGCC-TC
1 GCAGCAGGATCGACATCACGCA-AGGGGGACTGGGCCGATCCTC-GGCTTGCGCATTCTACCTTT
* * * * *
19664584 TCCAACTGGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
64 TCGATC-GGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCT
* * *
19664649 AGTCTAAGATCATACCGGATCGAGGGTTGCG
128 AGTCTAAGATCACACCAGACCGAGGGTTGCG
* * * * * *
19664680 GCAGCAGGATCGACAGCACGTAGGGGGGACTGGGCCGGTCCTC-GCTTGCACATTCTACGTTTTC
1 GCAGCAGGATCGACATCACGCAAGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTACCTTTTC
* * * * *
19664744 GATCGGCTGAGCGCCCGCATGCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATA-
66 GATCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAG
* * *
19664808 TCTAAG-CCCCAGCCAGACCGAGGGTTGTG
130 TCTAAGATCACA-CCAGACCGAGGGTTGCG
* * * * * * * * *
19664837 GCAACAAGA-CTGATAGT-AGGCAGAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTATGCCTC
1 GCAGCAGGATC-GACA-TCACGCA-AGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTACCTT
* * ** * *
19664900 TCCGGTCGGCTCAGTGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATATGGAGTTCATTCCT
63 TTCGATCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCT
**
19664965 AGTCTAAGATCGGACCAGACCGAGGGTTGCG
128 AGTCTAAGATCACACCAGACCGAGGGTTGCG
** * *
19664996 ATAGCAGGATCGACATCATGCAAGGGGGACTGGGCCGATCGC-CGGCTTGTGCATTCTACCTTTT
1 GCAGCAGGATCGACATCACGCAAGGGGGACTGGGCCGATC-CTCGGCTTGCGCATTCTACCTTTT
* * * *
19665060 CGATCGGCTGAGCACCCAG-ACGTTCATTTCGTGGGTTGGA-TTTGGCATACGGGGTTCATTCC-
65 CGATCGGCTCAGCACCC-GCACGCTCATTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCT
19665122 ATGTCTAA
128 A-GTCTAA
19665130 CCATACGAAA
Statistics
Matches: 478, Mismatches: 110, Indels: 43
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 96 0.20
158 130 0.27
159 242 0.51
160 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCAGCAGGATCGACATCACGCAAGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTACCTTTTC
GATCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
CTAAGATCACACCAGACCGAGGGTTGCG
Found at i:19666223 original size:26 final size:26
Alignment explanation
Indices: 19666194--19666245 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19666184 GTTGACTTAG
*
19666194 GCATACAGAGTT-TTTCCCCAGTCTAA
1 GCATACAGAGTTAATT-CCCAGTCTAA
*
19666220 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
19666246 TATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:19666554 original size:26 final size:26
Alignment explanation
Indices: 19666525--19666577 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19666515 GTTGGCTTAG
*
19666525 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
*
19666551 GCATATAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
19666577 G
1 G
19666578 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:19667284 original size:26 final size:26
Alignment explanation
Indices: 19667248--19667300 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19667238 GTTGACTTAG
*
19667248 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTAATTCC-CAGTCTAA
19667274 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
19667300 G
1 G
19667301 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:19667783 original size:158 final size:159
Alignment explanation
Indices: 19667350--19667803 Score: 443
Period size: 158 Copynumber: 2.9 Consensus size: 159
19667340 GACCGGGGTG
* * * * * *
19667350 ATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCCCGTTTTGTGGGTTG
1 ATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * ** * **
19667415 GCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCAGAAGCAAGA
* * *
19667480 CCGGCAGCACGCAGAGGGGGACCGAGTTA
131 CCGACAGCACACAGAGGGGGACCGAGTCA
* * * * * * * * *
19667509 ATCCTC-AGCTTGTGCTTTATGCCTCTTC-GACTGGCTCAGTGCCCACACGCTCGTTTCGTGGGT
1 ATCCCCGA-CTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * ** *
19667572 TGACATAGGCATACGGAGTTCCTTCC-TAGTCTAAG-ATCGGACCAGACCGAGGGTTGCAGAAGC
64 TGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CCAGACCGAGGGTTGCAGAAGC
**
19667635 AAGATTGACAGCACACAG-GGGGGACCG-GATCA
127 AAGACCGACAGCACACAGAGGGGGACCGAG-TCA
* ** *
19667667 ATCCCCGACTTGCACATTCTGCCTCTCCGGTCGATTGAGCGCCTGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* ** *
19667732 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAAGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCAGAAGCAAGA
19667797 CCGACAG
131 CCGACAG
19667804 TGGGATCGAC
Statistics
Matches: 227, Mismatches: 59, Indels: 19
0.74 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 117 0.52
159 109 0.48
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
ATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCAGAAGCAAGA
CCGACAGCACACAGAGGGGGACCGAGTCA
Found at i:19668444 original size:26 final size:26
Alignment explanation
Indices: 19668406--19668467 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
19668396 TGCGTTGGCT
19668406 TAAGCATACGGAGCTCATT-CCATGTC
1 TAAGCATACGGAGCTCATTCCCA-GTC
* *
19668432 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGCTCATTCCCAGTC
19668458 TAA-CAT-CGGA
1 TAAGCATACGGA
19668468 CTAGACCAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 3 0.09
25 3 0.09
26 23 0.72
27 3 0.09
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGCTCATTCCCAGTC
Found at i:19671164 original size:13 final size:13
Alignment explanation
Indices: 19671146--19671172 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
19671136 TACGTATTAT
19671146 GCCTCTCCGACCA
1 GCCTCTCCGACCA
19671159 GCCTCTCCGACCA
1 GCCTCTCCGACCA
19671172 G
1 G
19671173 TTGAGCGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.52, G:0.19, T:0.15
Consensus pattern (13 bp):
GCCTCTCCGACCA
Found at i:19671945 original size:26 final size:26
Alignment explanation
Indices: 19671895--19671947 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19671885 GTTGGCTTAG
*
19671895 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
19671921 GCATATGGAGTTCATTTCCA-ATCTAA
1 GCATACGGAGTTCA-TTCCATATCTAA
19671947 G
1 G
19671948 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:19672944 original size:158 final size:158
Alignment explanation
Indices: 19672675--19672985 Score: 376
Period size: 158 Copynumber: 2.0 Consensus size: 158
19672665 TAAGATTAGA
* * * * ** * *
19672675 CCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGTAGGGGGGACCGGGCCGATCCTCGGCTT
1 CCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGACCAAGCCGATCCCCGACTT
* * * *
19672740 GCGCATTCTGCCTTTCCAGCTGGCTAAGGGCCCACACATCCATTTCGTTGG-TTGGCTTAGGCAT
66 ACGCATTATGCCTCTCCAGCCGGCTAAGGGCCCACACATCCATTTCG-TGGTTTGGCTTAGGCAT
* *
19672804 AGGGAGTTCATTCTATGTCTAAGCCCCAG
130 ACGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
19672833 CCGGACCGAGGGTTGTGGTAGC-GAGACCGACAGCACGCATAGGGGACCAAGTCGATCCCCGACT
1 CCGGACCGAGGGTTGTGGCAGCAG-GACCGACAGCACGCAGAGGGGACCAAGCCGATCCCCGACT
* * * * *
19672897 TACGCATTATGCCTCTCCGGCCGGCTAAGTGCCCGCAC-GCTCGTTTCGTGGTTTGGCTTAGGCA
65 TACGCATTATGCCTCTCCAGCCGGCTAAGGGCCCACACATC-CATTTCGTGGTTTGGCTTAGGCA
19672961 TACGGAGTTCATTCCATGTCTAAGC
129 TACGGAGTTCATTCCATGTCTAAGC
19672986 ATATGGAGTT
Statistics
Matches: 128, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 5 0.04
158 123 0.96
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGACCAAGCCGATCCCCGACTT
ACGCATTATGCCTCTCCAGCCGGCTAAGGGCCCACACATCCATTTCGTGGTTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:19672994 original size:26 final size:25
Alignment explanation
Indices: 19672958--19673009 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19672948 TTTGGCTTAG
19672958 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
19672984 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
19673009 G
1 G
19673010 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:19673368 original size:26 final size:26
Alignment explanation
Indices: 19673337--19673389 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19673327 GTTGACTTAG
*
19673337 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
19673363 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19673389 G
1 G
19673390 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19673467 original size:45 final size:46
Alignment explanation
Indices: 19673401--19673495 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 46
19673391 TCAGACCAGA
* *
19673401 TCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGAGGGGATCGGG
1 TCGAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGACCGGG
* * *
19673447 TCGA-GGTTACGACAGTAGGATCGACAGCACGCAGGGGGGACCGGG
1 TCGAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGACCGGG
19673492 TCGA
1 TCGA
19673496 TCCCTGGCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 40 0.91
46 4 0.09
ACGTcount: A:0.25, C:0.22, G:0.41, T:0.12
Consensus pattern (46 bp):
TCGAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGACCGGG
Found at i:19679740 original size:26 final size:26
Alignment explanation
Indices: 19679704--19679756 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19679694 GTTAGCTTAG
19679704 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19679730 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19679756 G
1 G
19679757 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19680473 original size:26 final size:26
Alignment explanation
Indices: 19680437--19680489 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19680427 GTTGACTTAG
**
19680437 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19680463 GCATAGGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19680489 G
1 G
19680490 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19681356 original size:26 final size:26
Alignment explanation
Indices: 19681306--19681358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19681296 GTTGACCTAG
*
19681306 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
19681332 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
19681358 G
1 G
19681359 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:19681716 original size:159 final size:157
Alignment explanation
Indices: 19681332--19681716 Score: 342
Period size: 159 Copynumber: 2.4 Consensus size: 157
19681322 CCCAGTCTAA
* * * * * * *
19681332 GCATACGGAGTTCATTCTCAATCTAAGATCGGACCGGATCAAGGGTTGCGACAATAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-TAGAGGATCGACA
** * * *
19681397 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
65 GCACGCAGGGGGGACCGACCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGCGCC
* *
19681462 CGCACACCCGTTTCATGGGTTGGCTTAG
130 AGCACACCCGTTTCATGGGTTGACTTAG
* * * ** ** * * * * *
19681490 GCGTAGGGAGTTCACT-CCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGTAGTGAGA-CCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGATAGAG-GATCGA-
* * ** *
19681553 CAGCACGCAGAGGGGGACCGACCCGATCCCTGGCTTGCGCATTATGCCTCTTTGACCGGCTCAGC
63 CAGCACGCAG-GGGGGACCGACCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGC
*** ** * **
19681618 GCCAGCGTGCTTGTTTCGTGGGTTGACTTTT
127 GCCAGCACACCCGTTTCATGGGTTGACTTAG
*
19681649 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAG-AGGATCGACA
19681714 GCA
65 GCA
19681717 TGTAGGGGTG
Statistics
Matches: 168, Mismatches: 52, Indels: 13
0.72 0.22 0.06
Matches are distributed among these distances:
157 6 0.04
158 45 0.27
159 111 0.66
160 6 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGAGGATCGACAG
CACGCAGGGGGGACCGACCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCA
GCACACCCGTTTCATGGGTTGACTTAG
Found at i:19682394 original size:26 final size:26
Alignment explanation
Indices: 19682358--19682410 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19682348 GTTGACTTAG
**
19682358 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19682384 GCATAGGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19682410 G
1 G
19682411 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19682864 original size:158 final size:155
Alignment explanation
Indices: 19682384--19682876 Score: 474
Period size: 158 Copynumber: 3.1 Consensus size: 155
19682374 CTTAGTCTAA
* * * * * * *
19682384 GCATAGGGAGTTCATCCCCAGTCTAAGATCAGATCGGACCGAGGGTTG-CGACCGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGTAG-CAGTAGGATCGAC
* * * **
19682448 AGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTACCTCTCTAGTCGGCTGAGCAC
65 AGCACGCAGGGGGGACC-AGTCGATCCCCGACTTGCGCTTTCTGCCTCTCCGGTCGGCTGA--AC
* *
19682513 CCGCACACCCGTTTCGTGGGTTGGCTTAG
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
19682542 GCATAGGGAGTTCATT-CCA-TATCTAAGCCCCAGTCGA-ACCGAGGGTTGTGGCAGTGGGATCG
1 GCATACGGAGTTCATTCCCAGTA--TAAG-ATCAGACCAGACCGAGGGTTGTAGCAGTAGGATCG
* * ** * * * **
19682604 GCAGCACGCAGAGAGGGATCGGGTTGATCCTCGACTTGCG-TATTATGCCTCTCCGACCGGCTCA
63 ACAGCACGCAG-GGGGGA-CCAGTCGATCCCCGACTTGCGCT-TTCTGCCTCTCCGGTCGGCT--
* * * * *
19682668 GTACCCGCATGCTCATTTTGTGGGTTGACTTAG
123 GAACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
19682701 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGTAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGTAGCAGTAGGATCGACA
*
19682766 GCACGCAGGGGGGACCAGCCCGATCCCCGACTTGCGCTTTCTGCCTCTCCGGTCGGCTGAACGCC
66 GCACGCAGGGGGGACCAG-TCGATCCCCGACTTGCGCTTTCTGCCTCTCCGGTCGGCTGAAC-CC
* *
19682831 AACACGCTCGTTTCATGGGTTGGCTTAG
129 -GCACGCTCGTTTCGTGGGTTGGCTTAG
19682859 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
19682877 ATGTCTAAGC
Statistics
Matches: 263, Mismatches: 56, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 4 0.02
157 7 0.03
158 129 0.49
159 116 0.44
160 4 0.02
161 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGTAGCAGTAGGATCGACA
GCACGCAGGGGGGACCAGTCGATCCCCGACTTGCGCTTTCTGCCTCTCCGGTCGGCTGAACCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19682909 original size:26 final size:26
Alignment explanation
Indices: 19682859--19682911 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19682849 GTTGGCTTAG
* *
19682859 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
19682885 GCATACAGAGTTCATTCACA-ATCTAA
1 GCATACAGAGTTCATTC-CATATCTAA
19682911 G
1 G
19682912 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:19683278 original size:367 final size:354
Alignment explanation
Indices: 19682765--19683464 Score: 819
Period size: 355 Copynumber: 1.9 Consensus size: 354
19682755 TAGGATCGAC
** *
19682765 AGCACGCAGGGGGGACCAGCCCGATCCCCGACTTGCGCTTTCTGCCTCTCCGGTCGGCTGAACGC
1 AGCACGCAGGGGGGACCAGCCCGATCCCCGACTTGCGAATTCTGCCTCTCCGGCCGGCTGAACGC
* * *
19682830 CAACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
66 CAACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGGTCTAAGCATACAGAG
* *
19682895 TTCATTCACAATCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAAGACCAGCAGCAGGATCGA
131 TTCATTCACAATCTAAGATCGGACCGGACCGAGGGTT---AC-----GA-CA--A-CAGGATCGA
* * * * * * * *
19682960 TAGCACGCAGGGGGGATCGAGCCAATCCCTGGCTTACGTATTCTGCCTCTCCTATCGGCTTAGTG
184 TAGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCG
* * **
19683025 CCAGCACGCTCGTTTTGTGAGTTGGCTTAGGCATACAGACTTCATTCCATGTCTAAGCCCCAGTC
249 CCAGCACGCCCGTTTCGTGAGTTGGCTTAGGCATACAGACTTCATTCCATGTCTAAGCCCCAACC
19683090 GGACCGACGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGT
314 GGACCGACGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGT
* * * * *
19683131 AGCACGTAGAGGGGGACCGGGCTGATCCTCGACTTGCGAATTCTGCCTCTCCGGCCGGCTGAGA-
1 AGCACGCAG-GGGGGACCAGCCCGATCCCCGACTTGCGAATTCTGCCTCTCCGGCCGGCTGA-AC
*** * *
19683195 GCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCGCGGTCTAAGCATACG
64 GCCAACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-AGGTCTAAGCATACA
** * * *
19683259 GAGTTCATTCTTAATCTAAGATTGGACCGGACCGAGGGTTACGATAATAGGATCGATAGCACGCA
128 GAGTTCATTCACAATCTAAGATCGGACCGGACCGAGGGTTACGACAACAGGATCGATAGCACGCA
* ** ** * *
19683324 GGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGC
193 GGGGGGACCGAGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGC
* * ** * *
19683389 CCGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
258 CCGTTTCGTGAGTTGGCTTAGGCATACAGACTTCATTCCATGTCTAAGCCCCAACCGGACCGACG
19683454 GTTGTGGCAGC
323 GTTGTGGCAGC
19683465 GAGACCAGCA
Statistics
Matches: 283, Mismatches: 48, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
355 133 0.47
356 1 0.00
358 1 0.00
359 2 0.01
364 2 0.01
366 11 0.04
367 132 0.47
368 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (354 bp):
AGCACGCAGGGGGGACCAGCCCGATCCCCGACTTGCGAATTCTGCCTCTCCGGCCGGCTGAACGC
CAACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGGTCTAAGCATACAGAG
TTCATTCACAATCTAAGATCGGACCGGACCGAGGGTTACGACAACAGGATCGATAGCACGCAGGG
GGGACCGAGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGCCCG
TTTCGTGAGTTGGCTTAGGCATACAGACTTCATTCCATGTCTAAGCCCCAACCGGACCGACGGTT
GTGGCAGCAGGACCGGCAGCGGGATCGGT
Found at i:19683554 original size:159 final size:159
Alignment explanation
Indices: 19683283--19683756 Score: 456
Period size: 159 Copynumber: 3.0 Consensus size: 159
19683273 TCTAAGATTG
* ** ** * * * * *
19683283 GACCGGACCGAGGGTTACGATAATAGGATCGATAGCACGCAGGGGGGACCGGGCTGATCCCCGGC
1 GACCGGACCAAGGGTTACGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCGATCCCTGGC
* * * * *
19683348 TTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCG
66 TTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCA
* *
19683413 TAGGGAGTTCATTCCATGTCTAAGCCCCA
131 TACGGAGTTCATTCCATGTCTAAGCACCA
* ** *
19683442 -ACCGGACCGAGGGTTGTGGCAGC-GAGACC-AGCAGCACGCAGAGGGGGATCGAGCCGATCCCT
1 GACCGGACCAAGGGTTACGGCAGCAG-GACCGA-CAGCACGCAG-GGGGGACCGAGCCGATCCCT
* ** * * * * * **
19683504 GGCTTGCGCATTATGCCTCTTTGACAGGCTCAGCGCCCGCACACTTGTTTCGTGGGTTGACTTTT
63 GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* *
19683569 GTATACGGAGTTCATTCCCA-GTCTAAG-ATCA
128 GCATACGGAGTTCATT-CCATGTCTAAGCACCA
* * * *
19683600 GACCGGACCAAGGGTTACGGTAGCAGGATCGACAGCACACAGGGGTGGACCGAGCCAATCCCCT-
1 GACCGGACCAAGGGTTACGGCAGCAGGACCGACAGCACGCAGGGG-GGACCGAGCCGAT-CCCTG
* * * ** *
19683664 ACTTGGGCATTCTGCCTCTCCGGCCGGCTGAGCACCTACACACTCGTTTCATGGGTTGGCTTAGG
64 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGG
*
19683729 CATATGGAGTTCATTCCATGTCTAAGCA
129 CATACGGAGTTCATTCCATGTCTAAGCA
19683757 TACGGAGTTC
Statistics
Matches: 247, Mismatches: 57, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 37 0.15
159 198 0.80
160 10 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
GACCGGACCAAGGGTTACGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCGATCCCTGGC
TTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCACCA
Found at i:19684844 original size:159 final size:157
Alignment explanation
Indices: 19684482--19684852 Score: 399
Period size: 159 Copynumber: 2.3 Consensus size: 157
19684472 TAAGCATATG
* * * * *
19684482 GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGCCAGTAGGATCGACAGCACGCA
1 GAGTTCATT-CCAGTCTAAGATCGGACCGGACTGAGGGTTATGGCAGCAGGACCGACAGCACACA
* * * *
19684547 AGGGGGATCGAGTCGATCCCTGACTTACGCATTCTACCTCTCCGACCGACTGAGCGCCCATAAGC
65 AGGAGGATCGAGTCGATCCCTGACTTACGCATTATACCTCTCCGACCGACTCAACGCCCATAAGC
19684612 CCGTTTCGTGGGTTGGCTTAGGCATAGC
130 CCGTTTCGTGGGTTGGCTTAGGCATAGC
* ** * * *
19684640 GAGTTCATTCCATGTCTAAG-CCCCAGTCGGACTGAGGGTTTTGGCAGCGGGACCGACAGCACAC
1 GAGTTCATTCCA-GTCTAAGATCGGA-CCGGACTGAGGGTTATGGCAGCAGGACCGACAGCACAC
* * ** *
19684704 AAAGGAGGATCG-GGCTGATCCCCTG-CTTGCGCATTATACCTCTCCGGTCGACTCAACGCCCGT
64 -AAGGAGGATCGAGTC-GAT-CCCTGACTTACGCATTATACCTCTCCGACCGACTCAACGCCCAT
* * *
19684767 ACGCTCGTTTCGTGGGTTGGCTTGGGCATA-C
126 AAGCCCGTTTCGTGGGTTGGCTTAGGCATAGC
* * * *
19684798 GAAGTTCATTCCTAGCCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGACC
1 G-AGTTCATTCC-AGTCTAAGATCGGACCGGACTGAGGGTTATGGCAGCAGGACC
19684853 AGCAGTAGGA
Statistics
Matches: 173, Mismatches: 32, Indels: 15
0.79 0.15 0.07
Matches are distributed among these distances:
157 5 0.03
158 50 0.29
159 110 0.64
160 8 0.05
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCCAGTCTAAGATCGGACCGGACTGAGGGTTATGGCAGCAGGACCGACAGCACACAA
GGAGGATCGAGTCGATCCCTGACTTACGCATTATACCTCTCCGACCGACTCAACGCCCATAAGCC
CGTTTCGTGGGTTGGCTTAGGCATAGC
Found at i:19684999 original size:26 final size:26
Alignment explanation
Indices: 19684963--19685015 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19684953 GTTGGCTTAG
*
19684963 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19684989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19685015 G
1 G
19685016 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19685138 original size:197 final size:195
Alignment explanation
Indices: 19684792--19685382 Score: 743
Period size: 197 Copynumber: 3.0 Consensus size: 195
19684782 GTTGGCTTGG
* * * * *
19684792 GCATACGAAGTTCATTCCTAGCCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAGCA
* * * * * * *
19684857 GTAGGATCGTCAGCATGTAGGGAGGGATCGGGTTGATCCCCGACTTACGCGTTCTACCTCTCCGG
66 GTAGGATCGACAGCACGCAGGGA-GGATCGGGTCGATCCCC-ACTTGCGCATTCTGCCTCTCCGG
* *
19684922 CCGACTGAGTGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
129 CCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
19684987 AA
194 AA
* ** * *
19684989 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATTGAGGTTTGCGACAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAGCA
* * * * * *
19685054 ATAGGATCGACAGCGCGCAGGGGAGGACCGGGCCGGTCCCCACCTTGCGCATTCTGCCTCTCCAG
66 GTAGGATCGACAGCACGCA-GGGAGGATCGGGTCGATCCCCA-CTTGCGCATTCTGCCTCTCCGG
* * * * *
19685119 TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCT
129 CCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
19685184 AA
194 AA
* * *
19685186 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGTAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAGCA
* * * * * *
19685251 GCAGGATTGACAGCACGCAGGG-GGATCGAGTCGATCCCCATCTCGTGCATTCTGTCTCTCCGGC
66 GTAGGATCGACAGCACGCAGGGAGGATCGGGTCGATCCCCA-CTTGCGCATTCTGCCTCTCCGGC
* * * *
19685315 CGACTGAGTGCCTGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
130 CGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
19685380 A
195 A
19685381 GC
1 GC
19685383 CCCAATCGAA
Statistics
Matches: 332, Mismatches: 60, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
195 92 0.28
196 4 0.01
197 232 0.70
198 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (195 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAGCA
GTAGGATCGACAGCACGCAGGGAGGATCGGGTCGATCCCCACTTGCGCATTCTGCCTCTCCGGCC
GACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:19685196 original size:26 final size:26
Alignment explanation
Indices: 19685160--19685212 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19685150 GTTGGTTTAG
19685160 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19685186 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19685212 G
1 G
19685213 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19685577 original size:26 final size:26
Alignment explanation
Indices: 19685547--19685617 Score: 142
Period size: 26 Copynumber: 2.7 Consensus size: 26
19685537 AGGGATACGG
19685547 AGTTCATCCCCAGTCTAAGCATATGT
1 AGTTCATCCCCAGTCTAAGCATATGT
19685573 AGTTCATCCCCAGTCTAAGCATATGT
1 AGTTCATCCCCAGTCTAAGCATATGT
19685599 AGTTCATCCCCAGTCTAAG
1 AGTTCATCCCCAGTCTAAG
19685618 ATCAGACCAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (26 bp):
AGTTCATCCCCAGTCTAAGCATATGT
Found at i:19686247 original size:195 final size:197
Alignment explanation
Indices: 19685975--19686341 Score: 533
Period size: 195 Copynumber: 1.9 Consensus size: 197
19685965 GATCGACAGC
* * * *
19685975 ACGCAGGAGGGGATCGGACCGATCCTCGGCTTGTGCATTCTGCCTCTCCAACCGGTTGAGTGCCC
1 ACGCAGGAGGGGACCGGACCGATCCTCAGCTTGTGCATTCTACCTCTCCAACCGGTTGAGCGCCC
* * *
19686040 GCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTATAAGCATACAGAGT
66 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTATAAGCATACAGAGT
* * *
19686104 TCATTCCCAGTCTAAGATCGAATCGGATCG-GGGTTACGACAGCAAGACCAGCAGCAAAATTGGT
130 TCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTACGACAGCAAGACCAGCAGCAAAATTGGT
19686168 AGT
195 AGT
* * * *
19686171 ACGCA-GAGGGGACCGGGCTGATCCTCAGCTTGTGCATTCTACCTCTCCGACCGGTTGAGCGCTC
1 ACGCAGGAGGGGACCGGACCGATCCTCAGCTTGTGCATTCTACCTCTCCAACCGGTTGAGCGCCC
* * *
19686235 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
66 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTATAAGCATACAGAGTT
* *
19686300 CATTCCCAATCTAAGATCGTACCGGACCGAGGGTTGCGACAG
131 CATTCCCAATCTAAGATCGAACCGGACCGAGGGTTACGACAG
19686342 TAGGATCAGT
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
195 131 0.87
196 19 0.13
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (197 bp):
ACGCAGGAGGGGACCGGACCGATCCTCAGCTTGTGCATTCTACCTCTCCAACCGGTTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTATAAGCATACAGAGTT
CATTCCCAATCTAAGATCGAACCGGACCGAGGGTTACGACAGCAAGACCAGCAGCAAAATTGGTA
GT
Found at i:19686291 original size:26 final size:26
Alignment explanation
Indices: 19686262--19686314 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19686252 GTTGACTTAG
*
19686262 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
19686288 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
19686314 G
1 G
19686315 ATCGTACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:19693147 original size:158 final size:158
Alignment explanation
Indices: 19692616--19693168 Score: 467
Period size: 158 Copynumber: 3.5 Consensus size: 158
19692606 TCTCCGATCG
* * * * *
19692616 GCCTCTACGGCCGACTAAGCGCCCGCAGGCTCGTTTCATGGGTTGACTTAGGCATACGCAGTTCA
1 GCCTCTTCGGCCGACTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTACA
* * * * * *
19692681 TTCCCA-ATCTAAGATCATACGGGATCGAGGGTTACAGG-AGCAGGATCCG-CAGCACGCAGGGG
66 TT-CCATGTCTAAGATCACACCGGACCGAGGGTTGC-GGCAGCAGGAT-CGACAGCATGCAGGGG
* * **
19692743 GGATTGGGTCGATCCCCGGTTTGTGCATTCT
128 GGATCGGGTCGATCCCTGACTTGTGCATTCT
* * * * * *
19692774 GCCTCTTCGGGCGGCTAAGTGCCTGCACGC-CTATTTCGTGGGTT-AGCTTAGGCATAGGGAGTT
1 GCCTCTTCGGCCGACTAAGCGCCCGCACGCTC-ATTTCATGGGTTGA-CTTAGGCATACGGAG-T
* * * * * * * *
19692837 A-ATTCCATGTCTAAG-CCCCAGCCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCATGCAAAG
63 ACATTCCATGTCTAAGATCACA-CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGC-AGG
* * * * *
19692900 GGCGACCGGGTCGAT-CTTCGACTTGCGCATTAT
126 GGGGATCGGGTCGATCCCT-GACTTGTGCATTCT
* * * * * * *
19692933 GCCTCTTCGGCCGGCTCAGCGCTCGGACACTCGTTTCATGGGTTGACTTATGCATACGGAGTACA
1 GCCTCTTCGGCCGACTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTACA
** **
19692998 TTCCCA-GTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGG
66 TT-CCATGTCTAAGATCACACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGG
*
19693062 ATCGGGCCGATCCCTGACTTGTGCATTCT
130 ATCGGGTCGATCCCTGACTTGTGCATTCT
* * * ** ** *
19693091 ACCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGGGTTAGGCATACGGAGTTCA
1 GCCTCTTCGGCCGACTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTACA
19693156 TTCCATGTCTAAG
66 TTCCATGTCTAAG
19693169 CATACGGAGT
Statistics
Matches: 303, Mismatches: 76, Indels: 32
0.74 0.18 0.08
Matches are distributed among these distances:
157 14 0.05
158 168 0.55
159 114 0.38
160 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCCTCTTCGGCCGACTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTACA
TTCCATGTCTAAGATCACACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGA
TCGGGTCGATCCCTGACTTGTGCATTCT
Found at i:19699167 original size:26 final size:26
Alignment explanation
Indices: 19699131--19699181 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19699121 GTTGACTTAG
19699131 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19699157 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
19699182 GGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19699477 original size:159 final size:159
Alignment explanation
Indices: 19699295--19699661 Score: 409
Period size: 159 Copynumber: 2.3 Consensus size: 159
19699285 CTCGCATGCC
* * *
19699295 CATTTTGTGGGTTGACTTAGGCATAGGGAGTTCAATCCATGTCTAAGCCCCAG-CCGGACTGAGG
1 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGG
** *** * * * *
19699359 GTTGTGGCAGTGGGACCGACAGCACACAGAGAGGGACCGGGTCGATCCCTGGCTTGCACATTATG
66 GTTGCAGCAGCAAGACCGACAGCACACAGAGAGGGACCGGGTCAATCCCCGGCTTACACATTATA
* *
19699424 CTTCTCCAGCCGGTTCAATG-CCCGCACGCT
131 CCTCTCCAGCCGGCT-AA-GACCCGCACGCT
* * *
19699454 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAG
1 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACTGAG
* * * * * * *
19699517 GGTTGCAGCAGCAAGATCGACAGCACGCAGGGAGGGATCGGGTTAATCCCCGGCTTACGCATTCT
65 GGTTGCAGCAGCAAGACCGACAGCACACAGAGAGGGACCGGGTCAATCCCCGGCTTACACATTAT
* *
19699582 ACCTCTCCGGTCGGCTAAGCACCCGCACGCT
130 ACCTCTCCAGCCGGCTAAG-ACCCGCACGCT
* * *
19699613 CGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
19699662 TACGGAGTTC
Statistics
Matches: 172, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 8 0.05
159 159 0.92
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGG
GTTGCAGCAGCAAGACCGACAGCACACAGAGAGGGACCGGGTCAATCCCCGGCTTACACATTATA
CCTCTCCAGCCGGCTAAGACCCGCACGCT
Found at i:19699669 original size:26 final size:26
Alignment explanation
Indices: 19699633--19699685 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19699623 GTTGGCTTAG
19699633 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19699659 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19699685 G
1 G
19699686 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19699726 original size:12 final size:12
Alignment explanation
Indices: 19699709--19699741 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
19699699 GAGGGTTGCG
19699709 ATAGCAGGACCA
1 ATAGCAGGACCA
19699721 ATAGCAGGACCA
1 ATAGCAGGACCA
*
19699733 ACAGCAGGA
1 ATAGCAGGA
19699742 TCGGTAGCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.24, G:0.27, T:0.06
Consensus pattern (12 bp):
ATAGCAGGACCA
Found at i:19700372 original size:158 final size:158
Alignment explanation
Indices: 19700104--19700458 Score: 375
Period size: 158 Copynumber: 2.2 Consensus size: 158
19700094 GGGTTACGGT
* * *
19700104 AGCAGGA-TCGAC-GCATGCAGGAGGGACCGGGCCGATCCTCGCTTGCGTATTCTACCTCTCCAG
1 AGCAGGACT-GACAGCACGCAGGGGGGACCGGGCCGATCCTCGCTTGCGCATTCTACCTCTCCAG
* * * * * *
19700167 CCTGCTGAATGCCCTGTATGCCTATTTTGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCACGTC
65 CCTGCTGAATGCCCCGCACGCCTATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTC
19700232 TAAGCCCCAGCC-GAACCGAGGGTCGTGGC
130 TAAGCCCCAGCCAG-ACCGAGGGTCGTGGC
* * * *
19700261 AGCGGGA-TCGGCAGCACGCAGGGGGGACTGGGCCGATCCTCGACTTTCGCATTCTACCTCTCC-
1 AGCAGGACT-GACAGCACGCAGGGGGGACCGGGCCGATCCTCG-CTTGCGCATTCTACCTCTCCA
* * * *
19700324 GGCTGGCTG-A-GCACCCGCACGTCC-ATTTCGTAGGTTGGGTTAGGCATAGGGGGTTCATTGCA
64 GCCT-GCTGAATGC-CCCGCACG-CCTATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * *
19700386 TGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGT
126 CGTCTAAGCCCCAGCCAGACCGAGGGTCGTGGC
* *
19700419 AGCAGGACTGACAGCATGCAGAGGGGGACCGGGCCTATCC
1 AGCAGGACTGACAGCACGCAG-GGGGGACCGGGCCGATCC
19700459 CCGGCTTATG
Statistics
Matches: 164, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 12 0.07
158 110 0.67
159 42 0.26
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
AGCAGGACTGACAGCACGCAGGGGGGACCGGGCCGATCCTCGCTTGCGCATTCTACCTCTCCAGC
CTGCTGAATGCCCCGCACGCCTATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCT
AAGCCCCAGCCAGACCGAGGGTCGTGGC
Found at i:19701408 original size:26 final size:26
Alignment explanation
Indices: 19701378--19701429 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19701368 TTGACTTAGT
*
19701378 CATACGGAGTTCA-TCCCTAGTCTAAG
1 CATACAGAGTTCATTCCC-AGTCTAAG
19701404 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
19701430 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:19701731 original size:159 final size:158
Alignment explanation
Indices: 19701444--19701906 Score: 374
Period size: 159 Copynumber: 2.9 Consensus size: 158
19701434 AATTGGATCG
* * ** * * * * * *
19701444 AGGGTTGCGGTAGCAGGATCGACAGCATGCAAGG-GGGACTGGGTCGATCCTCGGCTTGCTCATT
1 AGGGTTGCGGCAGCAGGACCGACAGCACACAGGGAGGGACCGGGCCAATCCTCGACTTGCGCATT
* * * * ** * ** * * *
19701508 CTGCCTCTCCGACCGGGTAAGGGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 ATGCCTATCCGACCGGCTCAGCACCCGCACACTCATTTCGTGGGTT-GCTTAGGCATACGGAGTT
* * * *
19701573 CATTCCATGTCTAAGCCCCAGCCGGATCG
130 CATTCCATGTCTAAGCCCAAACCGGACCA
* * * * **
19701602 ATGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGA-GGACCGGGCCAATCCTCGGGTTGCGCAT
1 AGGGTTGCGGCAGCAGGACCGACAGCACACAG-GGAGGGACCGGGCCAATCCTCGACTTGCGCAT
** ** * * *
19701666 TATGCCTATCCGGTCGGCTCAGTGCCCGTACACTCATTTCATGGGTTGACTTAGGCATACAGAGT
65 TATGCCTATCCGACCGGCTCAGCACCCGCACACTCATTTCGTGGGTTG-CTTAGGCATACGGAGT
* **
19701731 TCATT-CTTAGTCTAAGATCAAACCGGACCA
129 TCATTCCAT-GTCTAAGCCCAAACCGGACCA
* * * * **
19701761 AGGGTTGCGGTAGTAGGATCGATAGCACGTAGGGAGGGACCGGGCCAATCCTCGACTTGCGCATT
1 AGGGTTGCGGCAGCAGGACCGACAGCACACAGGGAGGGACCGGGCCAATCCTCGACTTGCGCATT
* * * * * *
19701826 CTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTCGCTTAGGCATACGGAGTT
66 ATGCCTATCCGACCGGCTCAGCACCCGCACACTCATTTCGTGGGTT-GCTTAGGCATACGGAGTT
19701891 CATTCCATGTCTAAGC
130 CATTCCATGTCTAAGC
19701907 TTATGGAGTT
Statistics
Matches: 234, Mismatches: 64, Indels: 13
0.75 0.21 0.04
Matches are distributed among these distances:
158 29 0.12
159 202 0.86
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
AGGGTTGCGGCAGCAGGACCGACAGCACACAGGGAGGGACCGGGCCAATCCTCGACTTGCGCATT
ATGCCTATCCGACCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCAAACCGGACCA
Found at i:19702270 original size:26 final size:26
Alignment explanation
Indices: 19702234--19702286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19702224 GTTGACTTAG
*
19702234 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
19702260 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
19702286 G
1 G
19702287 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:19703119 original size:26 final size:26
Alignment explanation
Indices: 19703083--19703135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19703073 GTTGACTTAG
* *
19703083 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
*
19703109 GCATACAGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
19703135 G
1 G
19703136 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:19703155 original size:352 final size:338
Alignment explanation
Indices: 19702673--19703316 Score: 797
Period size: 352 Copynumber: 1.9 Consensus size: 338
19702663 CCTCGGCTTG
* ** * * *
19702673 CGCATTTTACCTCTCCGACCGGTTGAGCGCCCGCACGTCATTTTGTGGGTTGGCTTAGGCATACG
1 CGCATTATACCTCTCCGACCGACTGAGCACCCGCACGTCATTTGGTGGGTTGACTTAGGCATACG
* * * * *
19702738 TAGTTCATTCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
66 GAGTTCATCCCATATCTAAGCATACAGAGTTCATTCCCACTCTAAGATCGAACCGGACCGAGGGT
* * * * *
19702803 TGCGGCAGCAGGACCAACAGTAGGATCGGCAGCACGTAAGGGGGACCAGGCCGAT-TCTCGGCTT
131 TACAGCAGCAGG------A-T-GGA-CAGCA-CACG-AA-AGGGACCAGGCCGATCCCT-GGCTT
* * ** * * * *
19702867 GCGCATTCTACCTCTTCGGTTGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATA
183 GCGCAATCTACCTCTCCGG-CCGCTCAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
*
19702932 CGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGG
247 CGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGG
19702997 ATCGATAGCACACAGAGAGGGACCTTA
312 ATCGATAGCACACAGAGAGGGACCTTA
* **
19703024 CGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTGGTTTGGTGGGTTGACTTAGGCATAC
1 CGCATTATACCTCTCCGACCGACTGAGCACCCGCACG-TCATTTGGTGGGTTGACTTAGGCATAC
* *
19703089 GGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCACTCTAAGATCGAACCGGACTGAGG
65 GGAGTTCAT-CCCATATCTAAGCATACAGAGTTCATTCCCACTCTAAGATCGAACCGGACCGAGG
* * * *
19703153 GTTACAGTAGCAGGATTGACAGCACGCGAAAGGGACCGGGCCGATCCCTGGCTTGCGCAATCTAC
129 GTTACAGCAGCAGGATGGACAGCACACGAAAGGGACCAGGCCGATCCCTGGCTTGCGCAATCTAC
* *
19703218 CTCTCCGGCCGCTCAGCTCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
194 CTCTCCGGCCGCTCAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
*
19703283 CATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGG
259 CATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
19703317 TAACGGGACC
Statistics
Matches: 253, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
339 81 0.32
340 35 0.14
341 4 0.02
342 3 0.01
343 4 0.02
344 2 0.01
345 1 0.00
346 1 0.00
351 32 0.13
352 87 0.34
353 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (338 bp):
CGCATTATACCTCTCCGACCGACTGAGCACCCGCACGTCATTTGGTGGGTTGACTTAGGCATACG
GAGTTCATCCCATATCTAAGCATACAGAGTTCATTCCCACTCTAAGATCGAACCGGACCGAGGGT
TACAGCAGCAGGATGGACAGCACACGAAAGGGACCAGGCCGATCCCTGGCTTGCGCAATCTACCT
CTCCGGCCGCTCAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGATAGCACACA
GAGAGGGACCTTA
Found at i:19703641 original size:159 final size:156
Alignment explanation
Indices: 19703248--19703643 Score: 370
Period size: 159 Copynumber: 2.5 Consensus size: 156
19703238 CGCACGCCCA
*
19703248 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGC-GGACCGAGGGTT
* * * * * * *
19703313 GTGGTAACGGGACCGACAATGCGCAGAGGGGGATCGGGCCGATCCCTGGCTTGTGCATTATGCCT
64 GTGGTAGCAGGACCGACAATACGCAGAGGGGAACCGGGCCGATCCC-GGATTGTACATTATGCCT
*
19703378 CTTCGACTGGCTCAGCGCCCACACACTCG
128 CTCCGACTGGCTCAGCGCCCACACACTCG
* * ** * *
19703407 TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGAGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAG--CGGACCGAGGGT
** * ** * * * * *
19703471 TACGATAGCAGGATTGACAGTATGCAG-GGGTGAACCGGGTCGATCACC-GATTTTCACATTCTG
63 TGTGGTAGCAGGACCGACAATACGCAGAGGG-GAACCGGGCCGATC-CCGGATTGT-ACATTATG
*
19703534 CCTCTCCGACTGGC-CGAGCG-CTAGCACACTCG
125 CCTCTCCGACTGGCTC-AGCGCCCA-CACACTCG
* * *
19703566 TTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AG-CGGACCGAGGGTT
*
19703631 GTGGCAGCAGGAC
64 GTGGTAGCAGGAC
19703644 TGGCAGCGGG
Statistics
Matches: 186, Mismatches: 41, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
158 16 0.09
159 162 0.87
160 8 0.04
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCGGACCGAGGGTTGT
GGTAGCAGGACCGACAATACGCAGAGGGGAACCGGGCCGATCCCGGATTGTACATTATGCCTCTC
CGACTGGCTCAGCGCCCACACACTCG
Found at i:19703792 original size:26 final size:26
Alignment explanation
Indices: 19703755--19703807 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19703745 GTTGACTTAG
*
19703755 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
19703781 GCATACCA-AGTTCATTCCCAATCTAA
1 GCATA-CAGAGTTCATCCCCAATCTAA
19703807 G
1 G
19703808 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:19704131 original size:26 final size:26
Alignment explanation
Indices: 19704101--19704150 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19704091 GACTTAGGCG
19704101 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
* *
19704127 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
19704151 ATCGTATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:19704179 original size:343 final size:348
Alignment explanation
Indices: 19703571--19704309 Score: 816
Period size: 343 Copynumber: 2.1 Consensus size: 348
19703561 ACTCGTTTTG
* * * **
19703571 TGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGC
*
19703636 AGCAGGACTGGCAGCGGGATCGATAGCATGCAGAGGGGGATCAGACTGATCCCCGACTTGCGCAT
66 AGCAGGACT-GCA---GGA-C-A-AGCATGCAGAGGGGGATCAGACTGATCCCAGACTTGCGCAT
** * *
19703701 TATGCCTCTCCGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
124 TATGCCTCTCCAACCGGCTAAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
*
19703766 TCATCCCCAGTCTAAGCATACCAAGTTCATTCCCAATCTAAGATTAGACCGGATCAAGGGTTGCG
189 TCATCCCCAGTCTAAGCATACCAAGTTCATTCCCAATCTAAGATTAGACCAGATCAAGGGTTGCG
* * *** * * *
19703831 GCAGCAGG-TTCGACAGCACGCTGGAGGG-ATTGGGCCAATCCCCGTCTTGCACATTCTACCTCT
254 GCAGCAGGATTC-ACAGCACACAGG-GGGAACCAGGCCAATCACCGGCTTGCACATTATACCTCT
* * * *
19703894 CCGGTTGGCTGAGCGCCCGTA-CCCCAGTTTCT
317 CCGGTCGACTGAGCGCCCGCATCCCC-GTTTCA
* *
19703926 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGT
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGC
* * * * *
19703991 AGCGGGA-T-CA-G-C-AGCATGTAGAGGGGGATCGGGCTGATCCCTAG-CTTGCGTATTATGCC
66 AGCAGGACTGCAGGACAAGCATGCAGAGGGGGATCAGACTGATCCC-AGACTTGCGCATTATGCC
* ** * * *
19704050 TCTCCAACCGGCTGAGTGCCCACACGCTTGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATCC
130 TCTCCAACCGGCTAAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCC
** * * * * *
19704115 CCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGA-TCGTATCAGATCGAGGGTT-CTGGCAG
195 CCAGTCTAAGCATACCAAGTTCATTCCCAATCTAAGATTAG-ACCAGATCAAGGGTTGC-GGCAG
** * * *
19704178 CAGGATTCACAGCACACAGGGGGAACCAGGCCGGTCATCGGCTTGCATATTATGCCTCTCCGGTC
258 CAGGATTCACAGCACACAGGGGGAACCAGGCCAATCACCGGCTTGCACATTATACCTCTCCGGTC
* *
19704243 GACTGAGCGCCCGCATGCTCGTTTCA
323 GACTGAGCGCCCGCATCCCCGTTTCA
* *
19704269 TGGGTTGGATTAGGCATACGGAGTTCATTCGATGTCTAAGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
19704310 ATACGGAGTT
Statistics
Matches: 326, Mismatches: 52, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
342 6 0.02
343 244 0.75
344 6 0.02
346 1 0.00
348 1 0.00
352 2 0.01
354 1 0.00
355 65 0.20
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (348 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGC
AGCAGGACTGCAGGACAAGCATGCAGAGGGGGATCAGACTGATCCCAGACTTGCGCATTATGCCT
CTCCAACCGGCTAAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC
CAGTCTAAGCATACCAAGTTCATTCCCAATCTAAGATTAGACCAGATCAAGGGTTGCGGCAGCAG
GATTCACAGCACACAGGGGGAACCAGGCCAATCACCGGCTTGCACATTATACCTCTCCGGTCGAC
TGAGCGCCCGCATCCCCGTTTCA
Found at i:19704981 original size:26 final size:26
Alignment explanation
Indices: 19704945--19704997 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19704935 GTTGACTTAG
19704945 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
19704971 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19704997 G
1 G
19704998 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19705476 original size:26 final size:26
Alignment explanation
Indices: 19705446--19705498 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19705436 CTTGGCTTAG
19705446 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
19705472 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19705498 G
1 G
19705499 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19708052 original size:26 final size:26
Alignment explanation
Indices: 19708016--19708068 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19708006 GTTGACTTAG
*
19708016 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
19708042 GCATACAGAGTTCATTCTCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
19708068 G
1 G
19708069 ATCGACTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:19708926 original size:318 final size:315
Alignment explanation
Indices: 19708042--19708928 Score: 965
Period size: 318 Copynumber: 2.8 Consensus size: 315
19708032 CCCAATCTAA
* * * * * * *
19708042 GCATACAGAGTTCATTCTCAATCTAAGATCGACTTGGACCAAGGGTTACGACAGTAGGATCGACA
1 GCATACAGAGTTCATTC-CCATTTAAGATCGA-TCGGACCGAGGGTTGCGACAGCAGGATCGATA
* * * *
19708107 GCATGC-AGAGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGGTCGGTTGAGCAC
64 GCATGCAAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGTCGGCTGAGCAC
* * *
19708171 CCGTACGCCCGATTT-GTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
129 CCGCACGCCCG-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * * * *
19708235 GGATCGAGGGTTGTGGCAGCGGGACTAGCAGCACGTAAAGGGGGACCAAGTCGATCCCTGGCTTG
193 AGACCGAGGGTTGTGGCAGTGGGACGA-CAGCACGTAGAGGGGGACCGAGCCGATCCCTGGCTTG
* * *
19708300 CGCATTATGCCTCTTCGGTTGGGTCAGCACCCGTACGCTCGTTTCATGGGTTGACTTAT
257 CGCATTATGCCTCTTCGGTCGGGTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
19708359 GCATACGGAGTTCATTCCTATTCTAAGATTAGACCAGACCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCATT-TAAGA-TCGATCGGACCGAGGGTTGCGACAGCAGGATCGATA
* * * * * * * * * * * *
19708424 GCACGCAGGGGGGGACCGGGTCGATCCCTGGCCTATGCATTCTGCCTCT-TCGATTGGCTGAGCC
64 GCATGCAAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCT-GGTCGGCTGAGCA
*** * * * **
19708488 CCCGCACATTCATTTCCTGGGTTGGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCCCCAGTC
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * * * *
19708553 AGACCGAGGGTTGTTGCAGTGGAACTGACAGCATGTAGAGGTGGACTGGGCCGAT-CATCGGCTT
193 AGACCGAGGGTTGTGGCAGTGGGAC-GACAGCACGTAGAGGGGGACCGAGCCGATCCCT-GGCTT
* * * * *
19708617 GTGCATTATGCCTCTTCGGTCGGTTCAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAG
256 GCGCATTATGCCTCTTCGGTCGGGTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
*
19708677 GCATACAGAGTTCATTCCCAGTTTAAGATCGGATCGGACCGAGGGTTGC-AGTAGCAGGATCGAT
1 GCATACAGAGTTCATTCCCA-TTTAAGATC-GATCGGACCGAGGGTTGCGA-CAGCAGGATCGAT
* * * * *
19708741 AGCATGCAAGAAGGGACCGAGCCGGTCCCCGGCTTACGCATTCTACCTGTCTGGCCGACTGAGCA
63 AGCATGCAAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGTCGGCTGAGCA
* *
19708806 ACCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAGTC
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * *
19708871 AGACCGAGGGTTGTGGTAGTGGGATCGACAACACGCAGAGGGGGACCGTGCCGATCCC
193 AGACCGAGGGTTGTGGCAGTGGGA-CGACAGCACGTAGAGGGGGACCGAGCCGATCCC
19708929 CAGCTTAGGC
Statistics
Matches: 454, Mismatches: 103, Indels: 24
0.78 0.18 0.04
Matches are distributed among these distances:
316 3 0.01
317 59 0.13
318 386 0.85
319 6 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (315 bp):
GCATACAGAGTTCATTCCCATTTAAGATCGATCGGACCGAGGGTTGCGACAGCAGGATCGATAGC
ATGCAAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGTCGGCTGAGCACCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
CCGAGGGTTGTGGCAGTGGGACGACAGCACGTAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCA
TTATGCCTCTTCGGTCGGGTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:19708929 original size:159 final size:159
Alignment explanation
Indices: 19708097--19708940 Score: 650
Period size: 159 Copynumber: 5.3 Consensus size: 159
19708087 TTACGACAGT
* * * * *
19708097 AGGATCGACAGCATGCAGA-GGGGATCGAGCCGATCCTCGGCTTGCGCATTCTACCTC-TCTGGT
1 AGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTC-GGT
* * * * *
19708160 CGGTTGAGCACCCGTACGCCCGATTT-GTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCT
65 CGGCTGAGCACCCGCACGCTCG-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
19708224 AAGCCCCAGCCGGATCGAGGGTTGTGGCAGC
129 AAGCCCCAGTCAGACCGAGGGTTGTGGCAGC
* * * * * * * * *
19708255 GGGA-CTAGCAGCACGTAAAGGGGGACCAAGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGT
1 AGGATCGA-CAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGT
* * * * * * *
19708319 TGGGTCAGCACCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAT-TCT
65 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTCT
*** * * *
19708383 AAG-ATTAGACCAGACCGAGGGTTGCGACAGC
129 AAGCCCCAG-TCAGACCGAGGGTTGTGGCAGC
* * * * * * * * *
19708414 AGGATCGATAGCACGCAGGGGGGGACCGGGTCGATCCCTGGCCTATGCATTCTGCCTCTTCGATT
1 AGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTC
* ** * * * *
19708479 GGCTGAGCCCCCGCACATTCATTTCCTGGGTTGGCTTAGCCATACAGAGTTCATTCCATGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
19708544 GCCCCAGTCAGACCGAGGGTTGTTGCAG-
131 GCCCCAGTCAGACCGAGGGTTGTGGCAGC
* * * * * * * ** ** *
19708572 TGGAACTGACAGCATGTAGAGGTGGACTGGGCCGATCATCGGCTTGTGCATTATGCCTCTTCGGT
1 AGGATC-GACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGT
* * * * *
19708637 CGGTTCAGCGCCCGCACGCTCGTTTCGTGGGTTGAG-TTAGGCATACAGAGTTCATTCCCA-GTT
65 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG-GCTTAGGCATACGGAGTTCATT-CCATGTC
** * * ** *
19708700 TAAG-ATCGGATCGGACCGAGGGTTGCAGTAGC
128 TAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGC
* * * * * *
19708732 AGGATCGATAGCATGCA-AGAAGGGACCGAGCCGGTCCCCGGCTTACGCATTCTACCT-GTCTGG
1 AGGATCGACAGCACGCAGAG-GGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTC-GG
* * * * *
19708795 CCGACTGAGCAACCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
64 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
19708860 CAGCCCCAGTCAGACCGAGGGTTGTGGTAGT
129 AAGCCCCAGTCAGACCGAGGGTTGTGGCAGC
* * * * *
19708891 GGGATCGACAACACGCAGAGGGGGACCGTGCCGATCCCCAGCTTAGGCAT
1 AGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCAT
19708941 ACGGAGTTCA
Statistics
Matches: 530, Mismatches: 136, Indels: 39
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.00
158 32 0.06
159 476 0.90
160 20 0.04
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
AGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTC
GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGTCAGACCGAGGGTTGTGGCAGC
Found at i:19708988 original size:26 final size:26
Alignment explanation
Indices: 19708937--19708989 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19708927 CCCAGCTTAG
**
19708937 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATACCTAA
19708963 GCATACGGAGTTCATTCCCA-ACCTAA
1 GCATACGGAGTTCATT-CCATACCTAA
19708989 G
1 G
19708990 GTCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATACCTAA
Found at i:19709860 original size:26 final size:26
Alignment explanation
Indices: 19709810--19709862 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19709800 GTTGACTTAG
*
19709810 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
19709836 GCATACGGAGTTCATTCCGAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
19709862 G
1 G
19709863 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:19710130 original size:159 final size:159
Alignment explanation
Indices: 19709909--19710339 Score: 375
Period size: 159 Copynumber: 2.7 Consensus size: 159
19709899 TAGCACGCAG
* * * * *** * * * * * *
19709909 GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTTAGACTGGCTGAGCGTCGGCACGCC
1 GGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCGCCGGCCGGCTCAGCGCCCGCACGCT
* *
19709974 CGTTTCATTGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCTAACCGAACCGAGGG
66 CGTTTCATTGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAACCGAACCGAGGG
** * **
19710039 TTG-TGGCAGCGGGACTGGCAGCATGTAGA
131 TTGCT-GCAGCAAGACTGACAGCACATAGA
* * * * ** * *
19710068 GGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGGTCAGTGCCCGCACGCT
1 GGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCGCCGGCCGGCTCAGCGCCCGCACGCT
* * * * ** *
19710133 CG-TTC-TGTGGGTCGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGACCGA
66 CGTTTCAT-T-GGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCAAACCGAACCGA
*
19710195 GGGTTGCTGCAGCAAGATTGACAGCACATAGA
128 GGGTTGCTGCAGCAAGACTGACAGCACATAGA
* * * *** * *
19710227 GGGGGACCGGGCCGATCCCCGATTTACGCATTCTGCCTCGCCGGTTTGCTGAGCGCCCACACGCT
1 GGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCGCCGGCCGGCTCAGCGCCCGCACGCT
* * *
19710292 CATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
66 CGTTTCATTGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
19710340 ATACAGAGTT
Statistics
Matches: 212, Mismatches: 53, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 7 0.03
159 196 0.92
160 7 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCGCCGGCCGGCTCAGCGCCCGCACGCT
CGTTTCATTGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAACCGAACCGAGGG
TTGCTGCAGCAAGACTGACAGCACATAGA
Found at i:19711067 original size:26 final size:26
Alignment explanation
Indices: 19711037--19711086 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19711027 GACTTAGGCA
*
19711037 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGCCTAAGCT
*
19711063 TACGGAGTTCATTCCCAGCCTAAG
1 TACGGAGTTCATCCCCAGCCTAAG
19711087 AGCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGCCTAAGCT
Found at i:19711253 original size:26 final size:26
Alignment explanation
Indices: 19711217--19711269 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19711207 GTTGGCTTAG
*
19711217 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
19711243 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19711269 G
1 G
19711270 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19711981 original size:26 final size:26
Alignment explanation
Indices: 19711938--19711987 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
19711928 GACTTAGGCA
*
19711938 TACGGAGTTCATCTCCAGTCTAAGCT
1 TACGGAGTTCATCTCCAGCCTAAGCT
19711964 TACGGAGTTCAT-TCCCAGCCTAAG
1 TACGGAGTTCATCT-CCAGCCTAAG
19711988 AGCAGATCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCTCCAGCCTAAGCT
Found at i:19712147 original size:26 final size:26
Alignment explanation
Indices: 19712118--19712170 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19712108 GTTGGCTTAG
*
19712118 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
19712144 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19712170 G
1 G
19712171 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19713747 original size:902 final size:902
Alignment explanation
Indices: 19710156--19713946 Score: 5961
Period size: 902 Copynumber: 4.2 Consensus size: 902
19710146 GACTTATGCA
* * * * * * ** *
19710156 TACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCTGCAGCAAGATTGACAGCA
1 TACGGAGTTCATTCCCAGCCTAAGAGCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAACA
* * ** ** * * * * *** *
19710221 CATAGAGGGGGACCGGGCCGATCCCCGATTTACGCATTCTGCCTCGCCGGTTTGCTGAGCGCCCA
66 CACAG-GGGGGATCGGGTTGAT-CTTGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
* *
19710286 CACGCTC-ATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAGAGTT
129 CACGC-CGA-TTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTT
* * * * * *
19710350 CATTCCCAATCTAAGATTTTGAGCCA-GGTGCACATGCTGGGCTAGGGCTTGTGCTGGTGCCGCA
192 CATTCCTAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCA
* * ** * * * *
19710414 TTTGTTTCACCCGAGGCACCATCACCGGAGCATCGCCGGAGAGCCTAACCAACGGCATTGGGGGT
257 TTTTTTTCACCCGGGGCACCATCGTCGGAACATCGTCGGAGATCCTAACCAGCGGCATTGGGGGT
* * * * *
19710479 TCCGGTGATTGGAGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
322 TCCGGCGATAGG-GGGCT-TGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCC
* * **
19710544 TTATATTGGCCCTCTATACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
385 TTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
19710609 TTTTATTA-GTTTGCTACCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTCCAAACAGT
450 TTTTA-TAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGT
* * *
19710673 CACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCACGCCAAAAAAAATACAA
514 CACAAAATCTTCTCCACTTTAAGTTTTTAGCTG-ATTTTTTTT-TGCATGCCAACAAAAATACAA
* * * * *
19710738 CGATCA-CTCTACCAAATTTGGGAACAAGACTCTTTCTAAAAAAATTTTAAAGAAACCCGAACCG
577 GGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAACAAATTTTAAAAAAACCCGAACCG
19710802 CAAAAGGTTTTGAAAATAGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAG
642 CAAAAGGTTTTGAAAATAGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAG
*
19710867 GCTTAGGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAA
707 GCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAA
* * *
19710932 GATGTGCTTGAACCCACCTACCACCCGTTCCATCCCCGGCTTGCACATCCTACCTCTCCGGTCGG
772 GATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGG
19710997 CTGAGCGCCCACACTTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
837 CTGAGCGCCCACACTTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
19711062 T
902 T
* * * *
19711063 TACGGAGTTCATTCCCAGCCTAAGAGCAGATCGGACCGAGGGTTTCGGTAGCCGGACCGACAGCA
1 TACGGAGTTCATTCCCAGCCTAAGAGCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAACA
** * *
19711128 CGTAGGGGGGATCGGGTTGATCTTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTA
66 CACAGGGGGGATCGGGTTGATCTTGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
19711193 CGCCTGATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
131 CGCC-GATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
*
19711258 TCCTAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
195 TCCTAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTT
*
19711323 TTTTCGCCCGGGGCACCATCGTCGGAACATCGTCGGAGATCCTAACCAGCGGCATTGGGGGTTCC
260 TTTTCACCCGGGGCACCATCGTCGGAACATCGTCGGAGATCCTAACCAGCGGCATTGGGGGTTCC
* * * ** *
19711388 GACAATAGGGGGC-TGGGGGTGTGCGCACATGATGTGCTGTACGAGCTGGTACTTGGCCCTTATA
325 GGCGATAGGGGGCTTGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATA
*
19711452 TTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTA
390 TTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
19711517 TAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAACGGTCACAAA
455 TAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAA
**
19711582 ATCTTCTCTGCTTTAAGTTTTTAGCTGATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACC
520 ATCTTCTCCACTTTAAGTTTTTAGCTGATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACC
19711647 TCTACCAAATTTGGGGACAAAACTCTTTCTAAACAAATTTTAAAAAAACCCGAACCGCAAAAGGT
585 TCTACCAAATTTGGGGACAAAACTCTTTCTAAACAAATTTTAAAAAAACCCGAACCGCAAAAGGT
19711712 TTTG-AAATAGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGG
650 TTTGAAAATAGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGG
* *
19711776 GACCATTTTATGAATTTACAAGCCATGAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCT
715 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCT
* *
19711841 TGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCACATCCTGCCTCTTTGGTCGGCTAAGCGC
780 TGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAGCGC
* *
19711906 CCACACTTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCT
845 CCACACTTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCT
** *
19711964 TACGGAGTTCATTCCCAGCCTAAGAGCAGATCGGACCGAGGGTTG-GGACAGCAGGACCGGTAGC
1 TACGGAGTTCATTCCCAGCCTAAGAGCAGATCGGACCGAGGGTTGCGG-CAGCAGGACCGACAAC
* * * * *
19712028 ACACAGGGGGGATCGAGTTGATCTTGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGTGCCCGC
65 ACACAGGGGGGATCGGGTTGATCTTGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGC
* *
19712093 ATGTCTGATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
130 ACG-CCGATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
19712158 TTCCTAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATT
194 TTCCTAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATT
* *
19712223 TTTTTCACCTGGGGCACCATCGTCGAAACATCGTCGGAGATCCTAACCAGCGGCATTGGGGGTTC
259 TTTTTCACCCGGGGCACCATCGTCGGAACATCGTCGGAGATCCTAACCAGCGGCATTGGGGGTTC
19712288 CGGCGATAGGGGGCTTGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTAT
324 CGGCGATAGGGGGCTTGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTAT
* *
19712353 ATTGGCCCCCTATCCCTCATCAAACGTCCAGAACTCACACCACCTTAAAGAGCATTTGAGATTTT
389 ATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
19712418 ATAGGTTTGCTGCCAGAAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAACGGTCACAA
454 ATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAA
*
19712483 AATCTTCTCCGCTTTAAGTTTTTAGCTGATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCA
519 AATCTTCTCCACTTTAAGTTTTTAGCTGA-TTTTTTTTTGCATGCCAACAAAAATACAAGGATCA
*
19712548 CCTCTACCATATTTGGGGACAAAACTCTTTCTAAACAAATTTTAAAAAAACCCGAACCGCAAAAG
583 CCTCTACCAAATTTGGGGACAAAACTCTTTCTAAACAAATTTTAAAAAAACCCGAACCGCAAAAG
19712613 GTTTTGAAAATAGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAG
648 GTTTTGAAAATAGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAG
* *
19712678 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAACATGCG
713 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* *
19712743 CTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCACATCTTGCTTCTCTGGTCGGCTGAGC
778 CTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAGC
*
19712808 GCCCACACTTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCT
843 GCCCACACTTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCT
* * **
19712868 TACGGAGTTCATTCCCAGCCTAAAAGCAGACCGGACATAGGGTTGCGGCAGCAGGACCGACAACA
1 TACGGAGTTCATTCCCAGCCTAAGAGCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAACA
* *
19712933 CGCAGGGGGGATCGGGTTGATCTTGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCAGCA
66 CACAGGGGGGATCGGGTTGATCTTGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
*
19712998 CGTCCGATTCGTGTGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
131 CG-CCGATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* *
19713063 TCGTAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATATGCT-GTGTCGCATTT
195 TCCTAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTT
* * *
19713127 TTTTCACCCGGGGCACCATCGTTGGAACATCATCGGAGATCCTAACCAGCGACATTGGGGGTTCC
260 TTTTCACCCGGGGCACCATCGTCGGAACATCGTCGGAGATCCTAACCAGCGGCATTGGGGGTTCC
*
19713192 AGCGATAGGGGGCTTGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATA
325 GGCGATAGGGGGCTTGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATA
19713257 TTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
390 TTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
19713322 TAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAATCACAAA
455 TAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAA
* *
19713387 ATCTTCTCCACTTTAAGTTTTTAGCTTATTTTTTTTTGCATGCCAACAAAAATACAGGGATCACC
520 ATCTTCTCCACTTTAAGTTTTTAGCTGATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACC
* *
19713452 TCTACTAAATTTGGGGACAAAACTCTTTCTAAACAAATTTTAAAAAAACTCGAACCGCAAAAGGT
585 TCTACCAAATTTGGGGACAAAACTCTTTCTAAACAAATTTTAAAAAAACCCGAACCGCAAAAGGT
* * *
19713517 TTTAAAAATAATGAAAAATGGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGG
650 TTTGAAAATAGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGG
* *
19713582 TACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCT
715 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCT
* * * * *
19713647 TGAACCCACCTACCACCCGGTCGATCCCTGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGTGC
780 TGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAGCGC
* * *
19713712 CCGCACTTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCGCCAGTCTAAGCA
845 CCACACTTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCT
* * *
19713770 TACGGAGTTCATTCCCAGCCTAAGATCAGATC-G---GAGGGTTGCGACAGCAGGACCGGCAACA
1 TACGGAGTTCATTCCCAGCCTAAGAGCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAACA
** *
19713831 CACA-GGGGGATCGGGTTGATCTCAACTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCA
66 CACAGGGGGGATCGGGTTGATCTTGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
** * *
19713895 CGCTCGATTCGTGGGTTGGCTTAAACATAGGGAGTTCATTCCAAGTCTAAGC
131 CGC-CGATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
19713947 CCCAGCCGGA
Statistics
Matches: 2679, Mismatches: 193, Indels: 34
0.92 0.07 0.01
Matches are distributed among these distances:
896 1 0.00
897 101 0.04
898 28 0.01
900 2 0.00
901 576 0.22
902 639 0.24
903 575 0.21
904 467 0.17
905 119 0.04
906 113 0.04
907 58 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
TACGGAGTTCATTCCCAGCCTAAGAGCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGACAACA
CACAGGGGGGATCGGGTTGATCTTGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
CGCCGATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
CCTAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTT
TTTCACCCGGGGCACCATCGTCGGAACATCGTCGGAGATCCTAACCAGCGGCATTGGGGGTTCCG
GCGATAGGGGGCTTGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
AGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAA
TCTTCTCCACTTTAAGTTTTTAGCTGATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACCT
CTACCAAATTTGGGGACAAAACTCTTTCTAAACAAATTTTAAAAAAACCCGAACCGCAAAAGGTT
TTGAAAATAGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTT
GAACCCACCTACCACCCGTTCGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAGCGCC
CACACTTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCT
Found at i:19713787 original size:26 final size:26
Alignment explanation
Indices: 19713741--19713793 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19713731 GTTGACTTAG
*
19713741 GCATACGGAGTTCATCGCCAGTCTAA
1 GCATACGGAGTTCATCGCCAGCCTAA
19713767 GCATACGGAGTTCATTC-CCAGCCTAA
1 GCATACGGAGTTCA-TCGCCAGCCTAA
19713793 G
1 G
19713794 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCGCCAGCCTAA
Found at i:19714271 original size:26 final size:26
Alignment explanation
Indices: 19714234--19714286 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19714224 GTTGGCTTAG
*
19714234 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
19714260 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19714286 G
1 G
19714287 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19715126 original size:158 final size:157
Alignment explanation
Indices: 19714666--19715128 Score: 468
Period size: 158 Copynumber: 2.9 Consensus size: 157
19714656 CGGACCAGAC
* * * * * *
19714666 CGAGGGTTGCGGTAGCAGGATCGACAGCACGCA-GGAGGGACCAGGTGGATCCCCGGCTTAG-GC
1 CGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGGA-CGGGTCGATCCCCGGCTT-GCGC
* * * * *
19714729 ATTCTGCCTCTCCGGTCAGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGA
64 ATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* *
19714794 GTTCATTCTATGTCTAAGCTCCAGCTGGA
129 GTTCATTCCATGTCTAAGATCCAGCTGGA
* * * ** ** * * *
19714823 CTGAGGGTTGTGACAGTGGGACCGGTAGCACATAGAGGGGGACTGGGCCGATCCCCGACTTGCGC
1 C-GAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGGAC-GGGTCGATCCCCGGCTTGCGC
* * * ** * * * *
19714888 ATTATGCCTCTTCGATCGGCTCAGTTCCCTCACACTCGTTTCGTGGGTTGACTTATGCATACGGA
64 ATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
*
19714953 GTTCACTCCCA-GTCTAA-AT-CAGACTGGA
129 GTTCA-TTCCATGTCTAAGATCCAG-CTGGA
* * *
19714981 TCGAGGGTTGTGGCAGTAGGATCGACAGCATGCAGGGGGGGATCGGGTCGATCCTCGGCTTGCAC
1 -CGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGGA-CGGGTCGATCCCCGGCTTGCGC
* * *
19715046 ATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGAGTTGGCCTAGGCATACGGA
64 ATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
19715111 GTTCATTCCATGTCTAAG
129 GTTCATTCCATGTCTAAG
19715129 CATACGGAGT
Statistics
Matches: 237, Mismatches: 59, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
157 8 0.03
158 142 0.60
159 84 0.35
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGGACGGGTCGATCCCCGGCTTGCGCAT
TCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGATCCAGCTGGA
Found at i:19715138 original size:26 final size:26
Alignment explanation
Indices: 19715102--19715154 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19715092 GTTGGCCTAG
19715102 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
19715128 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19715154 G
1 G
19715155 TTTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19716241 original size:159 final size:158
Alignment explanation
Indices: 19715861--19716352 Score: 497
Period size: 159 Copynumber: 3.1 Consensus size: 158
19715851 CCCAATCTAA
* * * *
19715861 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACC-AGGGTTGCAGCAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * ** *
19715925 ACACGCAGGAGGGATCGGACCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAACGCC
66 GCAAGCAGGAGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
*
19715990 CGCACGCCCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
* *** ** * * ** * *
19716018 GCATA-GGTAGTTCATT-CCATGTCTAATCCCCA-ACTGGACTGAGGATTGTGGCAGCGGGACCG
1 GCATACAG-AGTTCATTCCCA-GTCTAA-GATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCG
* * * *
19716080 ACAGCAAGCAAAGAGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGCCTCAG
63 ACAGCAAGC-AGGAGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAG
* * **
19716145 CGCCCGCACGCTCATTTCATTGGTTAACTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
19716177 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * * * ** *
19716242 GCACACCGGGGGGGACCGCGTCGATCTCTGGCTTGTGCATTCTACCTTTCCGACCGGCTGAGCGT
66 GCA-AGCAGGAGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
19716307 CGGCTCGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
19716336 GCATATAGAGTTCATTC
1 GCATACAGAGTTCATTC
19716353 TATGTCTAAG
Statistics
Matches: 262, Mismatches: 64, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
156 4 0.02
157 24 0.09
158 25 0.10
159 203 0.77
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
GCAAGCAGGAGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:19716564 original size:26 final size:26
Alignment explanation
Indices: 19716516--19716573 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
19716506 CATGGGTTGG
* **
19716516 CTAAGGCATACTGAGTTCATTCCTTGT
1 CTAA-GCATACAGAGTTCATTCCCAGT
**
19716543 CTAAGCATACAGAGTTGGTTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
19716569 CTAAG
1 CTAAG
19716574 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAGT
Found at i:19716605 original size:185 final size:185
Alignment explanation
Indices: 19716177--19716581 Score: 589
Period size: 185 Copynumber: 2.2 Consensus size: 185
19716167 GTTAACTTAG
* *
19716177 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
* ** * * *
19716242 GCACACCGGGGGGGACCGCGTCGATCTCTGGCTTGTGCATTCTACCTTTCCGACCGGCTGAGCGT
66 GCACACAGGGGGGGACCGCACCGATCTCTGGCTTGTGCATTCTACATCTCCGACCGGCTGAGCGC
* *
19716307 CGGCTCGCTCGTTTCATGGGTTGGCTTAGGCATATAGAGTTCATTCTATGTCTAA
131 CGGCACGCTCGTTTCATGGGTTGGCTAAGGCATATAGAGTTCATTCTATGTCTAA
* * *
19716362 GTATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
* * * *
19716427 GCACGCAGGGGGGGACCGCACCGATCTCTGGCTTGTGCATTCTGCATCTCCTATCGGCTGAGCGC
66 GCACACAGGGGGGGACCGCACCGATCTCTGGCTTGTGCATTCTACATCTCCGACCGGCTGAGCGC
* *
19716492 CTGCACGTTCGTTTCATGGGTTGGCTAAGGCATACT-GAGTTCATTCCT-TGTCTAA
131 CGGCACGCTCGTTTCATGGGTTGGCTAAGGCATA-TAGAGTTCATT-CTATGTCTAA
**
19716547 GCATACAGAGTTGGTTCCCAGTCTAAGATCAGACC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
19716582 GAATTGAGGG
Statistics
Matches: 194, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
185 191 0.98
186 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
GCACACAGGGGGGGACCGCACCGATCTCTGGCTTGTGCATTCTACATCTCCGACCGGCTGAGCGC
CGGCACGCTCGTTTCATGGGTTGGCTAAGGCATATAGAGTTCATTCTATGTCTAA
Found at i:19717107 original size:26 final size:26
Alignment explanation
Indices: 19717057--19717109 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19717047 GTTGACTTAG
* *
19717057 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAAAGTTCATCCCTAATCTAA
19717083 GCATACAAAGTTCATTCCC-AATCTAA
1 GCATACAAAGTTCA-TCCCTAATCTAA
19717109 G
1 G
19717110 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCTAATCTAA
Found at i:19717320 original size:343 final size:340
Alignment explanation
Indices: 19716646--19717426 Score: 915
Period size: 343 Copynumber: 2.3 Consensus size: 340
19716636 GATCGGATCG
* * * * * *
19716646 ATCCTCGGCTTGCGCATTCTACCTCTTCGGCCGACTGAGCGCCCGCACACTCATTTTATGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTAAGCGCCCGCACGCTCATTTTGTGGGTTG
* * * ** *
19716711 ACTTAGGCATACGAAGTCCATCCCCAATCTAAGCATAGGAAGTTCACTCCCAGTCTAAGATCGGA
66 ACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACAAAGTTCACTCCCAATCTAAGATCGGA
* ** * *
19716776 CCGGACCAAGGGTTGCGGTAGCAAGTCGACAGCACGCAGGGGAATCGAATCGATCCCGGCTTACG
131 CAGGACCAAGGGTTGCGACAACAAGTCGACAGCACGCAGGGGAACCGAATCGATCCCGGCTTACG
* **
19716841 GAATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACCGTTTCATGGGTTGGCTTAGGCATAGGG
196 GAATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACCGTTTCATGGATTGGCTTAGGCATAAAG
* * ** * * *
19716906 AGTTCATTCCATTTTTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGTACCGGCAGCACGCTG
261 AGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGGGGCAGCAGGACCAGCAGCACGCTG
19716971 AGGGGGATCGAGCCA
326 AGGGGGATCGAGCCA
* * * * *
19716986 ATCCCCGGGTTGCGCATTATGCCTCTACGACCGACTAAACGCCCACACGCTCATTTTGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTAAGCGCCCGCACGCTCATTTTGTGGGTTG
*
19717051 ACTTAGGCATAC-AGAGTTCATCCCTAGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCGG
66 ACTTAGGCATACGA-AGTTCATCCCTAGTCTAAGCATACAAAGTTCACTCCCAATCTAAGATCGG
* * * * * * **
19717115 ATAGGATCGAGGGTTGCGACAACAGGATC-AGCATCACGCAGGGGGGACCGGGTCGATCCCCGGC
130 ACAGGACCAAGGGTTGCGACAACAAG-TCGA-CAGCACGCA-GGGGAACCGAATCGAT-CCCGGC
* * * * * *
19717179 TTGC-GCATTTTGCCTCTCCGATCGGCTGAGCGCCCGCATGC-CCGTTTCATGGATTGGCTTATG
191 TTACGGAATTCTGCCTCTCCGACCGACTGAGCGCCCGCA--CACCGTTTCATGGATTGGCTTAGG
* * *
19717242 TATAAAGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGGGGCAGCAGGACCAGCAG
254 CATAAAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGGGGCAGCAGGACCAGCAG
* *
19717307 CACG-TAGAGGGGGATTGGGCCA
319 CACGCT-GAGGGGGATCGAGCCA
* * * * * *
19717329 ATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGTACGCTAATTTTGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTAAGCGCCCGCACGCTCATTTTGTGGGTTG
* *
19717394 ACTTATGCATACGAAGTTCATTCCTAGTCTAAG
66 ACTTAGGCATACGAAGTTCATCCCTAGTCTAAG
19717427 ATCAGACCGG
Statistics
Matches: 367, Mismatches: 65, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
339 1 0.00
340 128 0.35
341 10 0.03
342 43 0.12
343 183 0.50
344 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (340 bp):
ATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTAAGCGCCCGCACGCTCATTTTGTGGGTTG
ACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACAAAGTTCACTCCCAATCTAAGATCGGA
CAGGACCAAGGGTTGCGACAACAAGTCGACAGCACGCAGGGGAACCGAATCGATCCCGGCTTACG
GAATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACCGTTTCATGGATTGGCTTAGGCATAAAG
AGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGGGGCAGCAGGACCAGCAGCACGCTG
AGGGGGATCGAGCCA
Found at i:19717399 original size:159 final size:159
Alignment explanation
Indices: 19717122--19717586 Score: 422
Period size: 158 Copynumber: 2.9 Consensus size: 159
19717112 CGGATAGGAT
* * * * * * * *
19717122 CGAGGGTTGCGACAACAGGATCAG-CATCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCA
1 CGAGGGTTGCGGCAGCAGGA-CAGACAGCACACAGGGGGGATCGGGCCAATCCCCGGCTTGTGCA
* * * * ** ** * *
19717186 TTTTGCCTCTCCGATCGGCTGAGCGCCCGCATGCCCGTTTCATGGATTGGCTTATGTATAAAGAG
65 TTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTAGTTTTGTGGGTTGGCTTATGCATAAAGAG
*
19717251 TTCATTCCATGTCTAAGCCCCA-ACCGGAC
130 TTCATTCCATGTCTAAGCACCAGACCGGAC
* * ** *
19717280 TGAGGGTTGGGGCAGCAGGACCAG-CAGCACGTAGAGGGGGATTGGGCCAATCCCCGGCTTGTGC
1 CGAGGGTTGCGGCAGCAGGA-CAGACAGCACACAG-GGGGGATCGGGCCAATCCCCGGCTTGTGC
* * * * *
19717344 ATTATGCCTCTTCGGTCGGCTCAGCGCCCGTACGCTAATTTTGTGGGTTGACTTATGCAT-ACGA
64 ATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTAGTTTTGTGGGTTGGCTTATGCATAAAG-
*
19717408 AGTTCATTCC-TAGTCTAAG-ATCAGACCGGAC
128 AGTTCATTCCAT-GTCTAAGCACCAGACCGGAC
* * ** * * *
19717439 CGAGGGTTGCTGCAGTAGGATTGACAGTACACAGGGGGGATCGGGTCGATCCCCGGCTTGCT-CA
1 CGAGGGTTGCGGCAGCAGGACAGACAGCACACAGGGGGGATCGGGCCAATCCCCGGCTTG-TGCA
* * * * * **
19717503 TTCTGCCTCTTCGGTCGACTGAGCACCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAG
65 TTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTAGTTTTGTGGGTTGGCTTATGCATAAAGAG
*
19717568 TTCAATCCATGTCTAAGCA
130 TTCATTCCATGTCTAAGCA
19717587 TACGGAGTTC
Statistics
Matches: 245, Mismatches: 53, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
158 124 0.51
159 121 0.49
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CGAGGGTTGCGGCAGCAGGACAGACAGCACACAGGGGGGATCGGGCCAATCCCCGGCTTGTGCAT
TATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTAGTTTTGTGGGTTGGCTTATGCATAAAGAGT
TCATTCCATGTCTAAGCACCAGACCGGAC
Found at i:19717607 original size:26 final size:26
Alignment explanation
Indices: 19717558--19717610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19717548 GTTGGCTTAG
*
19717558 GCATACGGAGTTCAATCCATGTCTAA
1 GCATACGGAGTTCAATCCAGGTCTAA
* *
19717584 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCAATCCAGGTCTAA
19717610 G
1 G
19717611 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCAGGTCTAA
Found at i:19718504 original size:158 final size:157
Alignment explanation
Indices: 19718181--19718529 Score: 384
Period size: 158 Copynumber: 2.2 Consensus size: 157
19718171 TTCATGGGTT
* * * * * *
19718181 GGCTTAGGCACAGGGAGTTTATTCCATGTCTAAGACTCAGTCAGGCCGAGGGTTGTGGCAGCGGG
1 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACTCAGTCAGGCCGAGGGTTGCGACAGCAGG
* * * *
19718246 ATCGACAGCACGCAGCGGGACCGGCCCGATCCCTGACTTACCCATTATGCCTTTTCGACTGGGTC
66 ATCGACAACACGCAGCGGGACCGGCCCGATCCCCGACTTACCCATTATGCCTTTACGACTGGCTC
** * * *
19718311 AGTGCCCGTACGCTCATTTCGTGGGTT
131 AGCACCCGCACGCTCATTTCGTGAGTA
*
19718338 GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGA-TCAGATC-GGACCGAGGGTTGCGACAGC
1 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACTCAG-TCAGG-CCGAGGGTTGCGACAGC
* * * * * *
19718400 AGGATCGACAACACGTATGGGGGACCAGG-CCGATCCCCGACTTACGCATTCTGCCTCTTAGGTC
63 AGGATCGACAACACGCA-GCGGGACC-GGCCCGATCCCCGACTTACCCATTATGCCT-TTACGAC
* *
19718464 -GGCTGAGCACCCGCACGCTCGTTTCGTGAGTA
125 TGGCTCAGCACCCGCACGCTCATTTCGTGAGTA
*
19718496 GGCTTAGGCATACGGAGTTCGTTCCATGTCTAAG
1 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
19718530 CATACGGAGT
Statistics
Matches: 159, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
156 6 0.04
157 61 0.38
158 86 0.54
159 6 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACTCAGTCAGGCCGAGGGTTGCGACAGCAGG
ATCGACAACACGCAGCGGGACCGGCCCGATCCCCGACTTACCCATTATGCCTTTACGACTGGCTC
AGCACCCGCACGCTCATTTCGTGAGTA
Found at i:19718533 original size:26 final size:26
Alignment explanation
Indices: 19718503--19718555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19718493 GTAGGCTTAG
*
19718503 GCATACGGAGTTCGTTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
19718529 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19718555 G
1 G
19718556 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19718874 original size:26 final size:26
Alignment explanation
Indices: 19718844--19718896 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19718834 GTTAACTTAG
19718844 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
19718870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19718896 G
1 G
19718897 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19718887 original size:341 final size:329
Alignment explanation
Indices: 19718462--19719078 Score: 778
Period size: 329 Copynumber: 1.8 Consensus size: 329
19718452 GCCTCTTAGG
* * * * *
19718462 TCGGCTGAGCACCCGCACGCTCGTTTCGTGAGTAGGCTTAGGCATACGGAGTTCGTTCCATGTCT
1 TCGGCTGAGCACCCGCACGCTCGTTTCATGAGTAGACTTAGGCATACGAAGTTCATCCCATGTCT
*
19718527 AAGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCGGACCGAGGGTTGCAGCAGCAGGACCA
66 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTT---G-AG-A-GA-C-
** * *
19718591 ACAGAAGGATCGACAGCATGCATGGGG-GACCAAGCCGGTCCCC-GACTTACGCATTTTGCCTCT
122 -C---AGGATCGACAGCACACA-GGGGCGACCAAGCCGATCCCCAG-CTTACGCATTCTGCCTCT
* *
19718654 CCGATCGGCTGAGCACCCGTACG-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
181 CCGACCGGCTGAGCACCCGCACGCCT-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
19718718 TGTCTAACCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAACGAGATTGGCAGCACGTA
245 TGTCTAACCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAACGAGATTGGCAGCACGTA
19718783 AAAGGGGACCGGGCTAATCC
310 AAAGGGGACCGGGCTAATCC
** * *
19718803 TCGGCTGAGTGCCTGCACGCTCGTTTCATGGGTTA-ACTTAGGCATACGAAGTTCATCCCCA-GT
1 TCGGCTGAGCACCCGCACGCTCGTTTCATGAG-TAGACTTAGGCATACGAAGTTCAT-CCCATGT
* *
19718866 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGATACCAGGATC
64 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGAGAGACCAGGATC
* ** * *
19718931 GATAGCACACAGGGGCGACCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAG
129 GACAGCACACAGGGGCGACCAAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAG
* * * *
19718996 CACCCGCATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
194 CACCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCCAA
*
19719061 CCGGATCGAGGGTTGTGG
259 CCGGACCGAGGGTTGTGG
19719079 CAGCGAGACC
Statistics
Matches: 242, Mismatches: 28, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
328 4 0.02
329 128 0.53
330 3 0.01
332 1 0.00
334 1 0.00
335 1 0.00
336 1 0.00
337 1 0.00
338 1 0.00
341 95 0.39
342 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (329 bp):
TCGGCTGAGCACCCGCACGCTCGTTTCATGAGTAGACTTAGGCATACGAAGTTCATCCCATGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGAGAGACCAGGATCGA
CAGCACACAGGGGCGACCAAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCCAACC
GGACCGAGGGTTGTGGTAGCAGGACCGACAACGAGATTGGCAGCACGTAAAAGGGGACCGGGCTA
ATCC
Found at i:19719197 original size:159 final size:160
Alignment explanation
Indices: 19719009--19719374 Score: 417
Period size: 159 Copynumber: 2.3 Consensus size: 160
19718999 CCGCATGCCT
* * * *
19719009 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACC-GGATCGAGG
1 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGGCT-GAGG
*
19719072 GTTGTGGCAGC-GAGACCCACAGCACGTAGAGGGG-GACTGGGCCGATCCCC-ATCTTGCGCAT-
65 GTTGTGGCAGCAG-GACCCACAGCACGCAG-GGGGAGACTGGGCCGATCCCCGA-CTTGCGCATC
* *
19719133 TATACCTTATC-GACCGACTCAGCGCCCGTATGCTC
127 T-TACC-TATCTGACCGACTCAGCGCCCGCACGCTC
* * *
19719168 GTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGGCTGAGG
1 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGGCTGAGG
* * * * * *
19719231 GTTGTGGCAGCAGGATCGACAGCATGCAGGGGGAGACTGGGTCGATCCCCGACTTGTGCATCTTG
65 GTTGTGGCAGCAGGACCCACAGCACGCAGGGGGAGACTGGGCCGATCCCCGACTTGCGCATCTTA
* * * * *
19719296 CCTCTCTGACCGAGTGAGCGCCTGCACGCTT
130 CCTATCTGACCGACTCAGCGCCCGCACGCTC
19719327 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
19719375 TACGGAGTTA
Statistics
Matches: 174, Mismatches: 23, Indels: 19
0.81 0.11 0.09
Matches are distributed among these distances:
158 12 0.07
159 152 0.87
160 10 0.06
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (160 bp):
GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGGCTGAGGG
TTGTGGCAGCAGGACCCACAGCACGCAGGGGGAGACTGGGCCGATCCCCGACTTGCGCATCTTAC
CTATCTGACCGACTCAGCGCCCGCACGCTC
Found at i:19719394 original size:25 final size:26
Alignment explanation
Indices: 19719346--19719397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19719336 GTTGGCTTAG
19719346 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19719372 GCATACGGAGTT-ATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
19719397 G
1 G
19719398 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19720098 original size:26 final size:26
Alignment explanation
Indices: 19720068--19720120 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19720058 GTTGACTTAG
19720068 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
19720094 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
19720120 G
1 G
19720121 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:19720445 original size:26 final size:26
Alignment explanation
Indices: 19720409--19720461 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19720399 GTTGGCTTAG
19720409 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19720435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19720461 G
1 G
19720462 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19720642 original size:26 final size:26
Alignment explanation
Indices: 19720603--19720658 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
19720593 TGGGTTGACT
** *
19720603 TAAGCATACGGAGTTTATGCCCAATC
1 TAAGCATAAAGAGTTCATGCCCAATC
* *
19720629 TAAGCATAAAGAGTTCATTCCCAGTC
1 TAAGCATAAAGAGTTCATGCCCAATC
19720655 TAAG
1 TAAG
19720659 AACTAACTAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATAAAGAGTTCATGCCCAATC
Found at i:19720999 original size:26 final size:26
Alignment explanation
Indices: 19720949--19721001 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19720939 GTTGGCTTAG
* *
19720949 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
19720975 GCATACGAAGTTCATTTCCA-GTCTAA
1 GCATACGAAGTTCA-TTCCATGTCTAA
19721001 G
1 G
19721002 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:19721718 original size:26 final size:26
Alignment explanation
Indices: 19721681--19721732 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19721671 GTTGACTTAG
19721681 GGATACGAAGTTCATCCCCAGTCTAA
1 GGATACGAAGTTCATCCCCAGTCTAA
* *
19721707 GGATAC-AGAGTTCATTCCTAGTCTAA
1 GGATACGA-AGTTCATCCCCAGTCTAA
19721733 CATCGGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
GGATACGAAGTTCATCCCCAGTCTAA
Found at i:19722414 original size:26 final size:26
Alignment explanation
Indices: 19722385--19722440 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19722375 TGGGTTGACT
*
19722385 TAAGCATACGGGGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
19722411 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
19722437 TAAG
1 TAAG
19722441 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:19722919 original size:26 final size:26
Alignment explanation
Indices: 19722889--19722941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19722879 GTTGGCTTAG
19722889 GCATACCGAGTTCATTCC-ATGTCTAA
1 GCATACCGAGTTCATTCCTA-GTCTAA
*
19722915 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCTAGTCTAA
19722941 G
1 G
19722942 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCTAGTCTAA
Found at i:19724114 original size:26 final size:26
Alignment explanation
Indices: 19724084--19724139 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19724074 TGGGTTGACT
19724084 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
19724110 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
19724136 TAAG
1 TAAG
19724140 ATCAGACTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:19724587 original size:158 final size:158
Alignment explanation
Indices: 19724113--19724655 Score: 561
Period size: 158 Copynumber: 3.4 Consensus size: 158
19724103 CCCAGTCTAA
* * **
19724113 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGG-CCGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCACACTAGGACCGAGGGTTGCGACAGCAGGACCGAC
* * *
19724177 AGCAC-TCAGGGGGGACCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGAAC-GGCTGAGC
66 AGCACGT-AGGGGGGACCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTTCG-ACTGGCTGAGC
* * * *
19724240 GTCCGCATGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
19724271 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCT-GGACTAAGGGTTGTGGCAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCACA-CTAGGACCGAGGGTTGCGACAGCAGGACCG
** * *
19724333 GTAGCACGTAGAGGGGGACCAGGTCC-ATCCCCGGCTTGCGCATTATGCCTC-TCTGA-TCGGCT
64 ACAGCACGTAG-GGGGGACC-GGGCCGATCCCC-GCTTGCGCATTCTGCCTCTTC-GACT-GGCT
* * * **
19724395 CAACGCCCGCACGCTCATTTCGTGGGTTAACTTAG
124 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
19724430 GCATACGGAGTTCGTTCCCAGTCTAAGATCACACT-GGACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCACACTAGGACCGAGGGTTGCGACAGCAGGACCGAC
* *
19724494 AACACGTAGGGGGGACCGGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGC
66 AGCACGTAGGGGGGACCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGC
*
19724559 CCGCAGGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
19724588 GCATACGGAGTTCATTCCCAGTGTAAGATCGGA-TCA-GACCGAGGGTTGCGACAGCAGGACCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCACACT-AGGACCGAGGGTTGCGACAGCAGGACCGA
19724651 CAGCA
65 CAGCA
19724656 GGATCGACAG
Statistics
Matches: 315, Mismatches: 53, Indels: 34
0.78 0.13 0.08
Matches are distributed among these distances:
157 12 0.04
158 176 0.56
159 118 0.37
160 9 0.03
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCACACTAGGACCGAGGGTTGCGACAGCAGGACCGAC
AGCACGTAGGGGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19724653 original size:12 final size:12
Alignment explanation
Indices: 19724636--19724667 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
19724626 CCGAGGGTTG
19724636 CGACAGCAGGAC
1 CGACAGCAGGAC
*
19724648 CGACAGCAGGAT
1 CGACAGCAGGAC
19724660 CGACAGCA
1 CGACAGCA
19724668 CGTACGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.31, G:0.31, T:0.03
Consensus pattern (12 bp):
CGACAGCAGGAC
Found at i:19724886 original size:171 final size:169
Alignment explanation
Indices: 19724524--19725459 Score: 459
Period size: 159 Copynumber: 5.5 Consensus size: 169
19724514 CCGGTCCCCA
* * *
19724524 GCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCAGGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * ** *
19724589 CATACGGAGTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGACCGACAG
66 CATACGGAGTTCATT-CCAGTCTAAG-CCCCAACAGACCGAGGGTTGCGACAGCAGGACCGACAG
* *
19724654 CAGGATCGACAGCACGTACGAAAGGATCGGGTCGATCCTCG
129 CAGGATCGACAGCACGCACGAAAGGATCGGGTCAATCCTCG
* * * * * *
19724695 GCTTACGAATTCTCCCTCTCCGGTTGGCTGAGCGTCGGCACGCTCGTTTCGTGGGTTAGG-TTAG
1 GCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT-GGCTTAG
* * * * * *
19724759 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACGGGATCGAGGGTTGTGGCAGCAGGACTGGCA
65 GCATACGGAGTTCATTCCA-GTCTAAGCCCCAAC-AGACCGAGGGTTGCGACAGCAGGACCGACA
* * *
19724824 GCGGGATCGGCAGCACGCA-GAAGGGGA-CAGGG-CTAATCC-CTG
128 GCAGGATCGACAGCACGCACGAA-AGGATC-GGGTC-AATCCTC-G
* * * * *
19724866 GCTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCACACGCACGTTTCGTGGG-TGGACTTAG
1 GCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG-CTTAG
* * ** ** * ** *
19724930 GCATACGAAGTTCATCCCCAGTCTAAG-CATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGA
65 GCATACGGAGTTCAT-TCCAGTCTAAGCCCCA---A---CAGACCGAGGGT-TG--C-GA-CAG-
** * ** *** *
19724994 CCGAGGGTTGCGACAGCAGGATCGACAGCACGCATG-GGGGATCGACCCAATCCCCG
117 -C-A-GG-ACCGACAGCAGGATCGACAGCACGCACGAAAGGATCGGGTCAATCCTCG
* * * *
19725050 GCTTGCGCATTCTACCTCTCCGATCGGCTGCA-CGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
1 GCTTGCGCATTCTGCCTCTCCGATTGGCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
19725114 GCATA-GAGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCGGGACCGAC
65 GCATACG-GAGTTCATTCCA-GTCTAAGCCCCAAC-AGACCGAGGGTTGCGACAGCAGGACCGAC
* *
19725178 AGC---A-CG-CAG-A-G-A-G---GGATCGGG-CTGATCCCCG
127 AGCAGGATCGACAGCACGCACGAAAGGATCGGGTC-AATCCTCG
* * * * * * * * * * *
19725209 GCTTACGCATTATCCCTCTTCGGTCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTGATG
1 GCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * ** * * * ** *
19725274 CAAACGGAGTTCATTCCCAGTCTAAGACCGAATTGGACTGAGGGTTGCGGCAGTAGGATTGATAG
66 CATACGGAGTTCATT-CCAGTCTAAGCCCCAA-CAGACCGAGGGTTGCGACAGCAGGACCGACAG
* * * *
19725339 C---AT-G-TAG-A-G---G--GGGACCGGG-CTAATCCCCG
129 CAGGATCGACAGCACGCACGAAAGGATCGGGTC-AATCCTCG
* *** * *
19725368 GCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTGGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
19725433 CATACGGAGTTCATTCCATGTCTAAGC
66 CATACGGAGTTCATTCCA-GTCTAAGC
19725460 ATACGGAGTT
Statistics
Matches: 595, Mismatches: 126, Indels: 100
0.72 0.15 0.12
Matches are distributed among these distances:
158 6 0.01
159 207 0.35
160 4 0.01
161 1 0.00
162 1 0.00
163 1 0.00
164 1 0.00
165 3 0.01
166 2 0.00
167 1 0.00
169 2 0.00
170 22 0.04
171 196 0.33
172 5 0.01
173 2 0.00
175 7 0.01
176 3 0.01
179 3 0.01
180 8 0.01
182 1 0.00
183 5 0.01
184 84 0.14
185 29 0.05
186 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (169 bp):
GCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCAGTCTAAGCCCCAACAGACCGAGGGTTGCGACAGCAGGACCGACAGCA
GGATCGACAGCACGCACGAAAGGATCGGGTCAATCCTCG
Found at i:19725247 original size:159 final size:159
Alignment explanation
Indices: 19724992--19725459 Score: 487
Period size: 159 Copynumber: 2.9 Consensus size: 159
19724982 GATCAGATCA
* * * * ** *
19724992 GACCGAGGGTTGCGACAGCAGGATCGACAGCACGCATG-G-GGGATCGACCCAATCCCCGGCTTG
1 GACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCA-GAGAGGGACCGGGCTAATCCCCGGCTTG
* *
19725055 CGCATTCTACCTCTCCGATCGGCTGCA-CGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
65 CGCATTCTACCTCTCCGGTCGGCT-CAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
*
19725119 -GAGAGTTCATTCCATGTCTAAGCCCCAGCTG
129 CG-GAGTTCATTCCATGTCTAAGCCCCAACTG
* * * * *
19725150 GACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGATCGGGCTGATCCCCGGCTTAC
1 GACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGGGCTAATCCCCGGCTTGC
* * * * * * * *
19725215 GCATTATCCCTCTTCGGTCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTGATGCAAACG
66 GCATTCTACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
19725280 GAGTTCATTCCCA-GTCTAAGACCGAATTG
131 GAGTTCATT-CCATGTCTAAGCCCCAACTG
** * ** * * * * *
19725309 GACTGAGGGTTGCGGCAGTAGGATTGATAGCATGTAGAGGGGGACCGGGCTAATCCCCGGCTTGT
1 GACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGGGCTAATCCCCGGCTTGC
* * * * **
19725374 GCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTGGTGGGTTGGCTTAGGCATACG
66 GCATTCTACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
19725439 GAGTTCATTCCATGTCTAAGC
131 GAGTTCATTCCATGTCTAAGC
19725460 ATACGGAGTT
Statistics
Matches: 252, Mismatches: 52, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
157 1 0.00
158 36 0.14
159 211 0.84
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (159 bp):
GACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGGGCTAATCCCCGGCTTGC
GCATTCTACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAACTG
Found at i:19725468 original size:26 final size:26
Alignment explanation
Indices: 19725432--19725484 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19725422 GTTGGCTTAG
19725432 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19725458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19725484 G
1 G
19725485 ATTTTTAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19726193 original size:26 final size:26
Alignment explanation
Indices: 19726164--19726216 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19726154 GTTGACTTAG
* *
19726164 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
19726190 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
19726216 G
1 G
19726217 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:19726535 original size:26 final size:26
Alignment explanation
Indices: 19726506--19726558 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19726496 GTTGGCTTAG
19726506 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19726532 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19726558 G
1 G
19726559 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19726903 original size:158 final size:158
Alignment explanation
Indices: 19726594--19726920 Score: 354
Period size: 158 Copynumber: 2.1 Consensus size: 158
19726584 AGCTGGACCA
* * * **
19726594 GCAGTAGGATCGACAGCATGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTT
1 GCAGCAGGATCAACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCC
** *
19726659 GGCTGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAAT
66 GGCTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
* ***
19726724 CTAAGATCAGACCGGGTCGAGGGTTGCG
131 CTAAGACCAGACCGAACCGAGGGTTGCG
* * * * *
19726752 GCAGCAGGATCAACAGCACGCAGGGGGGACCGGGCCGATCTCTGACTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCAACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCC
* * * * *
19726817 -GATCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
66 GGCT-GGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-
* * ** *
19726880 GTCTAAGCCCCAG-TTGAACCGAGGGTTGTG
129 ATCTAAG-ACCAGACCGAACCGAGGGTTGCG
*
19726910 CCAGCAGGATC
1 GCAGCAGGATC
19726921 GGTAGTGGGG
Statistics
Matches: 138, Mismatches: 28, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
157 5 0.04
158 130 0.94
159 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCAGCAGGATCAACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCC
GGCTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
CTAAGACCAGACCGAACCGAGGGTTGCG
Found at i:19727060 original size:26 final size:26
Alignment explanation
Indices: 19727031--19727083 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19727021 GTTGACTTAG
*
19727031 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
19727057 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19727083 G
1 G
19727084 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19727191 original size:513 final size:508
Alignment explanation
Indices: 19726190--19727585 Score: 1250
Period size: 513 Copynumber: 2.7 Consensus size: 508
19726180 CCCAGTCTAA
* * **
19726190 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
19726255 ACATGTA-GGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCACGTAGGGGGGATCGGGCCGATCCT--GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* * *
19726319 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCATAATCAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAATCAG
* * * *
19726384 ACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGTCGATCCTCGGCTTATG
194 ACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTACG
* * * * ** *
19726449 CATTTTGCCTCTCCGACCGGCTGAGCTCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
259 CATTATGCCTCTCCGACCGGATGAGCGCCCGCACGCTCGTTTCGTAAGTTGACTTAGGCATACGG
* * ***
19726514 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTT
324 AGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTT
*
19726579 GCGACAGCTGGACCAGCAGTAGGATCGACAGCATGCAAGGGGGACCGGGCCGATCCCCGACTTAC
389 GCGACAGCAGGACCAGCAGTAGGA-CGACAG-AT-CAAGGGGGACCGGGCCGATCCCCGACTTAC
* * * * * *** * *
19726644 GCATTATGCCTCTTTGGCTGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAT
451 GCATTATACCACTCTGGCCGGCTCAGCACCCGCACACCCATTTCATGGGTTGACTTAG
* ** *
19726702 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGGTCGAGGGTTGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
19726767 GCACGCAGGGGGGACCGGGCCGATCTCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCT
66 GCACGTAGGGGGGATCGGGCCGATC-CTG-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* * *
19726832 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT-TG
129 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAATCAG
* * * * *
19726896 AACCGAGGGTTGTGCCAGCAGGATCGGTAGTGGGGTCCGTAGCATGCAGAGGGGGATCGAGTTGA
194 -ACCGAGGGTTGTG---GCA-G--CGGGACT--GG--C--AGCACGCAGAGGGGGACCGAGTCGA
* * * * *
19726961 TCCCCGGCTTGCGTATTATGCCTCTCCGGCC-GATAGAGCGCTCGTACGCTCGTTTCGTAAGTTG
246 TCCCCGGCTTACGCATTATGCCTCTCCGACCGGAT-GAGCGCCCGCACGCTCGTTTCGTAAGTTG
*
19727025 ACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGG
310 ACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
* * * * *
19727089 ATCGGACCAAGGGTTGCGACAGCAGGATC-G-A-TA-G-C-AC-G-T-ATGGGGGACGGGGTCGA
374 ACCGGACCAAGGGTTGCGACAGCAGGACCAGCAGTAGGACGACAGATCAAGGGGGACCGGGCCGA
* * * * * * * * *
19727145 TTCCTGGCTTGCGCATTCTACCACTCTGGCCGGTTGAGCGCCCGCACACCCATTTCATGGGTTGG
439 TCCCCGACTTACGCATTATACCACTCTGGCCGGCTCAGCACCCGCACACCCATTTCATGGGTTGA
19727210 CTTAG
504 CTTAG
* * * ** * * *
19727215 GCATAGGGAGTTCATT-CGATTTCTAAGCA-CTAG-CTACACCGAGGGTTGTGGCAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATC-AGACTGGACCGAGGGTTGCGGCAGCAGGATCG
* * * ** * *
19727277 ACAGCACATAGAGGGGGATCGGGCCAATCCCCTGCTTGCGCATTATGCCTCTTTGGTCGGCTCAG
63 ACAGCACGTAG-GGGGGATCGGGCCGAT--CCTGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* ** * *
19727342 CACCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG--ATC
125 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCA-C
* * ** * * * ** * *
19727404 AGACCGGGTCGAGGGTTGCGGTAGCAGGA-TCAACAGCACGCAG-GGGGGACCGGGTCGATCCCT
188 A-ATCAGACCGAGGGTTGTGGCAGCGGGACT-GGCAGCACGCAGAGGGGGACCGAGTCGATCCCC
** * * * ** * * * * ** *
19727467 AACTTGCGGATTCTGCCTCTCCGGTCAGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
251 GGCTTACGCATTATGCCTCTCCGACCGGATGAGCGCCCGCACGCTCGTTTCGTAAGTTGACTTAG
* * * *
19727532 GCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
316 GCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
19727586 GTTTGAGCCA
Statistics
Matches: 718, Mismatches: 136, Indels: 71
0.78 0.15 0.08
Matches are distributed among these distances:
500 3 0.00
501 111 0.15
502 10 0.01
504 1 0.00
507 1 0.00
508 3 0.00
510 1 0.00
511 2 0.00
512 65 0.09
513 235 0.33
514 104 0.14
515 8 0.01
516 4 0.01
517 2 0.00
518 2 0.00
519 6 0.01
521 3 0.00
522 2 0.00
523 2 0.00
524 3 0.00
525 147 0.20
526 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (508 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGATCGGGCCGATCCTGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAATCAGAC
CGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTACGCA
TTATGCCTCTCCGACCGGATGAGCGCCCGCACGCTCGTTTCGTAAGTTGACTTAGGCATACGGAG
TTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGC
GACAGCAGGACCAGCAGTAGGACGACAGATCAAGGGGGACCGGGCCGATCCCCGACTTACGCATT
ATACCACTCTGGCCGGCTCAGCACCCGCACACCCATTTCATGGGTTGACTTAG
Found at i:19727536 original size:158 final size:157
Alignment explanation
Indices: 19727057--19727558 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 157
19727047 CCCAGTCTAA
* * * * * *
19727057 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGATCGGACCAAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
19727121 AGCACGTATGGGGGACGGGGTCGATTCCTGGCTTGCGCATTCTACCACTCTGGCCGGTTGAGCGC
65 AGCACGTAGGGGGGACCGGGTCGATCCCT-GCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
* * *
19727186 CCGCACACCCATTTCATGGGTTGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * *** * * *
19727215 GCATAGGGAGTTCATTCGATTTCTAAGCA-CTAG-CTACACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATC-AGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
19727278 CAGCACATAGAGGGGGATCGGGCCAATCCCCTGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGC
64 CAGCACGTAG-GGGGGACCGGGTCGAT-CCCTGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGC
* * * * *
19727343 ACCCGCACGCTTGTTTCGTGGGTTGACTTAT
127 GCCCGCACACTCGTTTCGTGGGTTGGCTTAG
** * *
19727374 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGGTCGAGGGTTGCGGTAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
19727438 AGCACGCAGGGGGGACCGGGTCGATCCCTAACTTGCGGATTCTGCCTCTCCGGTCAGCTGAGTGC
65 AGCACGTAGGGGGGACCGGGTCGATCCCT-GCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
19727503 CCGCACACTCGTTTCGTGGGTTGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
*
19727532 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
19727559 CATACGGAGT
Statistics
Matches: 265, Mismatches: 69, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 9 0.03
158 138 0.52
159 113 0.43
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGGGTCGATCCCTGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCC
GCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:19727582 original size:26 final size:26
Alignment explanation
Indices: 19727532--19727584 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19727522 GTTGGCTTAG
* *
19727532 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
19727558 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
19727584 G
1 G
19727585 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:19732044 original size:26 final size:26
Alignment explanation
Indices: 19732008--19732060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19731998 GTTGACTTAG
19732008 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
19732034 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19732060 G
1 G
19732061 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19732533 original size:157 final size:159
Alignment explanation
Indices: 19732128--19732534 Score: 399
Period size: 159 Copynumber: 2.6 Consensus size: 159
19732118 CAATCCCTGG
* * * * * *
19732128 CTTGCGCATTCTACCTCTTCGATCGGCTGGGCGGCCGCACGCCCGTTTCATGGGTTGGCTTAGGT
1 CTTGCGTATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * * ** ** *
19732193 GTAGGGATTTTATTCCATGTCTAAGCCCCAGTCAGATCAAGGGTTTTGGCAGCGGGACCTACAGC
66 ATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTTGCGGCAGCAAGACCGACAGC
19732258 ACGCAGAGGGGGACCGGGCCGATCCCCAA
131 ACGCAGAGGGGGACCGGGCCGATCCCCAA
* ** * * * * * *
19732287 CTTGCGTATTATGTCTCTTCGACCGGCTCAACGCCTGCACTCTCGTTTCATGGGTTGACTTATGC
1 CTTGCGTATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * ** * * *
19732352 ATAAGGAGTTCATTCCCA-GACTAAGATCGTA-TCGGACCGAGGGTTGCGGCAGCAAGATCGACA
66 ATAAGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAGACCAAGGGTTGCGGCAGCAAGACCGACA
* * *
19732415 GCACGCAG-GGGGGACC-GGCGGATTCCCGA
129 GCACGCAGAGGGGGACCGGGCCGATCCCCAA
* * * *
19732444 CTTGCGTATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGTATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* *
19732509 CTATGGAGTTCATTCCATGTCTAAGC
66 ATAAGGAGTTCATTCCATGTCTAAGC
19732535 ATACGGAGTT
Statistics
Matches: 193, Mismatches: 52, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
156 3 0.02
157 80 0.41
158 8 0.04
159 97 0.50
160 5 0.03
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (159 bp):
CTTGCGTATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTTGCGGCAGCAAGACCGACAGC
ACGCAGAGGGGGACCGGGCCGATCCCCAA
Found at i:19732925 original size:26 final size:26
Alignment explanation
Indices: 19732888--19732940 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19732878 GTTGACTTAG
19732888 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
19732914 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
19732940 G
1 G
19732941 ATCGGTCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:19733153 original size:368 final size:376
Alignment explanation
Indices: 19732469--19733191 Score: 903
Period size: 368 Copynumber: 1.9 Consensus size: 376
19732459 TCTCCGGCCG
* * * * * * * *
19732469 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCCTATGGAGTTCATTCCATGTCTAAG
1 GCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAG
* * *
19732534 CATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAGTAGGACTAGTAG
66 CATACAGAGTTCACTCCCAGTCTAAGATCAGACCAAATCGAGGGCTGCGATAGTAGGA--AGTA-
* * * * *
19732599 CAGGATCAGCAACACGCAGGGAGGGACCAGGTCGATCCTCGGCTTGCGTATTCTACCTCTCCGAT
128 CA-GATCAGCAACAC-CAGGGAGGGACCAGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGAC
* *
19732664 CGGCTGAGCACCCGCACACTCGTTTCGGGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
191 CGGCTGAGCACCCGCACACTCGTTTCAGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
19732729 AGCCCCAGCTGGACCAAGGATTGTGGCAACAGGACTGACAGCGGGATCAGCAGCATGCAG-AGAG
256 AGCCCCAGCCGGACCAAGGATTGTGGCAACAGGACCGACAGCGAGATCAGCAGCATGCAGAAG-G
* **
19732793 GGACCTGGCTGAT-CTCTGGCTTGCGCATTATACCTCTCGGGCTGGCCTCTCTGGCTA
320 GGACCGGGCTGATCCTC-GGCTTAAGCATTATACCTCTCGGGCTGGCCTCTCTGGCTA
*
19732850 GCTGAGCACCCACATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTAA
1 GCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATATCTAA
* * * *
19732914 GCATACAGAGTTCATTCCCAGTCTAAGATCGGTCCAAATCGAGGGCTGCGGTAGTAGG-A-T-C-
65 GCATACAGAGTTCACTCCCAGTCTAAGATCAGACCAAATCGAGGGCTGCGATAGTAGGAAGTACA
* *
19732975 GA-CAGC-ACA-CA-GGAGGGATCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGC
130 GATCAGCAACACCAGGGAGGGACCAGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGC
** * * *
19733036 TGAGCGTCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAAGCC
195 TGAGCACCCGCACACTCGTTTCAGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * * * **
19733101 CTAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGTAGCGAGATC-GACAGCATGCAGAAGGGGAC
260 CCAGCCGGACCAAGGATTGTGGCAACAGGACCGACAGCGAGATCAG-CAGCATGCAGAAGGGGAC
19733165 CGGGCTGATCCTCGGCTTAAGCATTAT
324 CGGGCTGATCCTCGGCTTAAGCATTAT
19733192 GCATCTTCGG
Statistics
Matches: 296, Mismatches: 42, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
367 1 0.00
368 171 0.58
369 7 0.02
371 3 0.01
372 4 0.01
373 2 0.01
375 1 0.00
377 1 0.00
378 1 0.00
381 102 0.34
382 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (376 bp):
GCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAG
CATACAGAGTTCACTCCCAGTCTAAGATCAGACCAAATCGAGGGCTGCGATAGTAGGAAGTACAG
ATCAGCAACACCAGGGAGGGACCAGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCT
GAGCACCCGCACACTCGTTTCAGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
CAGCCGGACCAAGGATTGTGGCAACAGGACCGACAGCGAGATCAGCAGCATGCAGAAGGGGACCG
GGCTGATCCTCGGCTTAAGCATTATACCTCTCGGGCTGGCCTCTCTGGCTA
Found at i:19733270 original size:26 final size:26
Alignment explanation
Indices: 19733240--19733295 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19733230 TAGGTTGGCT
* *
19733240 TAAGCATACGGAGTTCATTCCCTGTC
1 TAAGCATACGGAGTCCATTCCCAGTC
*
19733266 TAAGCATATGGAGTCCATTCCCAGTC
1 TAAGCATACGGAGTCCATTCCCAGTC
19733292 TAAG
1 TAAG
19733296 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTCCATTCCCAGTC
Found at i:19733964 original size:158 final size:157
Alignment explanation
Indices: 19733704--19734103 Score: 446
Period size: 157 Copynumber: 2.5 Consensus size: 157
19733694 CCCGCTCTGT
* * * * * * *
19733704 GCATTATGTCTCTCCGACCGGCTGAGCGCCCACACGTCCGTTTTGTGGGTTGGCTTAGGCATAGG
1 GCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *** *
19733769 GAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAG-CGGACCGACAGCACGTA
66 GAGTTCATTCCATGTCTAAGACCCAACCAAACCGAGGGTTGTGGCAGTAGGACCGACAGCACGT-
* *
19733833 GAGGGGGACCGAGCTGATCCCTGTCTTGC
130 -AGGGGGACCGAGCTGATACCTGACTTGC
* * * **
19733862 GCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGTTTGTTTCGTGGGTTGACTTATGCATATA
1 GCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * *
19733927 GAGTTCATTCC-TAGTCTAAGATCCAACCAAACGGAGGGTTGTGGCAGTAGGATCGATAGCACGT
66 GAGTTCATTCCAT-GTCTAAGACCCAACCAAACCGAGGGTTGTGGCAGTAGGACCGACAGCACGT
*
19733991 AGGGGGACCGGGCTGATACCTGACTTGC
130 AGGGGGACCGAGCTGATACCTGACTTGC
* * * * * * * *
19734019 GCATTCTGCCTC-TCTAGTCGGCTGAGCGCCCGTACGCTCATTTCATAGGTTGGCTTAGGCATAC
1 GCATTATGCCTCTTC-GGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAC
19734083 GGAGTTCATTCCATGTCTAAG
65 GGAGTTCATTCCATGTCTAAG
19734104 CATATAGAGT
Statistics
Matches: 201, Mismatches: 37, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
156 2 0.01
157 93 0.46
158 93 0.46
159 13 0.06
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (157 bp):
GCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGACCCAACCAAACCGAGGGTTGTGGCAGTAGGACCGACAGCACGTA
GGGGGACCGAGCTGATACCTGACTTGC
Found at i:19734107 original size:26 final size:26
Alignment explanation
Indices: 19734077--19734129 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19734067 GTTGGCTTAG
*
19734077 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19734103 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19734129 G
1 G
19734130 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19735340 original size:26 final size:26
Alignment explanation
Indices: 19735311--19735363 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19735301 GTTGGCTTAG
*
19735311 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19735337 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19735363 G
1 G
19735364 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19735708 original size:26 final size:26
Alignment explanation
Indices: 19735678--19735730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19735668 GTTGACTTAG
19735678 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
19735704 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19735730 G
1 G
19735731 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19736009 original size:338 final size:354
Alignment explanation
Indices: 19735293--19736042 Score: 773
Period size: 338 Copynumber: 2.1 Consensus size: 354
19735283 TGTACGCTTG
* * *
19735293 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATGCAGAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCA
19735357 GTCTAAGATCAGACTGGATCGAGGGTTGCGACAGTAGGACAAGCAGCAGGATCGACAGCATGTAG
65 GTCTAAGATCAGACTGGATCGAGGGTT-CGAC---AGGACAA-CAGCAGGATCGACAGCATGTAG
* ** * * ** *
19735422 GGGGGATCGGGCCGATCTCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCT
125 GGGGGA--GGGCCGATCCCCAGCATACGCATTCTGCCTCTCCGATCGGCGGAGCACCCGCACGCC
* * * * * *
19735487 CGTGTCGTGGGTTGGTTTAGGCATATGGAGTTCATTCCATGTCTAATCCCCAATCGGTCCAAGGG
188 CGTGTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGG
* * * *
19735552 TTGTGGCAGCAAGACCGACAGTGGGATTGACAGCACGCAGAGAGGGACCGAGCTGATCCCCGGCT
253 TTGTGG-AG--AGA-CGACA--GGGATCGACAGCACACAGAGAGGGACCGAGCCGATCCCCGACT
** * * ** *
19735617 TGCGTATTATGCCTCTCCCGCAGGTTAAGCACCCGTGCGCTCA
312 TGCACATTATGCCACTCCCGCAGGCTAAGCACCCGAACACTCA
* * *
19735660 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
** *
19735725 TCTAAGATTGGACTGGATCGA-GGTT-G-C-GG-C-A-A-CAGGATCGGCAGCATGTAGGGGGG-
66 TCTAAGATCAGACTGGATCGAGGGTTCGACAGGACAACAGCAGGATCGACAGCATGTAGGGGGGA
* * *
19735781 GGGCCGATCCCCAGCATACGCATTCTGCCTCTCCGGTCGGCGGAGCACCCGTACGCCCGTTTCGT
131 GGGCCGATCCCCAGCATACGCATTCTGCCTCTCCGATCGGCGGAGCACCCGCACGCCCGTGTCGT
* * * * *
19735846 GGGTT-GCTTAGGCATCGGGGGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAGGGTTGT-G-G
196 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGAG
* *
19735908 -TA-G-C-GGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCCCGACTTGCACATTATGCCA
261 AGACGACAGGGATCGACAGCACACAGAGAGGGACCGAGCCGATCCCCGACTTGCACATTATGCCA
* * * **
19735969 CTTCGGCCA-GCTCAGTGCCCGAACACTCA
326 CTCCCG-CAGGCTAAGCACCCGAACACTCA
*
19735998 TTTCGTGGGTTGACTTAAGCATACGGAGTTCA-CTCCCAGTCTAAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATC-CCCAGTCTAAG
19736043 ATCTGATCGG
Statistics
Matches: 329, Mismatches: 51, Indels: 35
0.79 0.12 0.08
Matches are distributed among these distances:
337 1 0.00
338 107 0.33
339 2 0.01
341 1 0.00
342 1 0.00
344 1 0.00
347 1 0.00
349 1 0.00
350 44 0.13
351 59 0.18
354 23 0.07
355 1 0.00
357 1 0.00
358 1 0.00
359 2 0.01
363 1 0.00
364 1 0.00
366 4 0.01
367 74 0.22
368 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (354 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCAGACTGGATCGAGGGTTCGACAGGACAACAGCAGGATCGACAGCATGTAGGGGGGA
GGGCCGATCCCCAGCATACGCATTCTGCCTCTCCGATCGGCGGAGCACCCGCACGCCCGTGTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGAG
AGACGACAGGGATCGACAGCACACAGAGAGGGACCGAGCCGATCCCCGACTTGCACATTATGCCA
CTCCCGCAGGCTAAGCACCCGAACACTCA
Found at i:19736272 original size:318 final size:315
Alignment explanation
Indices: 19735701--19736495 Score: 847
Period size: 318 Copynumber: 2.5 Consensus size: 315
19735691 ATCCCCAGTC
* *
19735701 TAAGCATACGGAGTTTATTCCCAGTCTAAGAT-TGGA-CTGGATCGAGGTTGCGGCAACAGGATC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCT-GATC-GGATCGAGGTTGCGGCAGCAGGATC
* * * * * *
19735764 GGCAGCATGTAGGGGGG--GGGCCGATCCCCAGCATACGCATTCTGCCTCTCCGGTCGG-CGGAG
64 GACAGCACGTAGGGGGGACGGGCCGATCCCCAGCTTGCGCATTCAGCCTCTCCGG-CGGACTGAG
* * * * * * *
19735826 CACCCGTACGCCCGTTTCGTGGGTT-GCTTAGGCATCGGGGGTTCATTCCATGTCTAAGCCTCAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
19735890 CCAGACCGAGGGTTGTGGTAGCGGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCCCGACT
193 CCAGACCAAGGGTTGTGGTAGCGGGATCGACAACACACAGAAGGGGACCGAGCCCATCCCCGACT
*
19735955 TGCACATTATGCCACTTCGGCCAGCTCAG-TGCCCGAACACTCATTTCGTGGGTTGACT
258 TGCACATTATGCCACTTCGGCCAGCTCAGCT-CCCGAACACTCATTTCATGGGTTGACT
* *
19736013 TAAGCATACGGAGTTCACTCCCAGTCTAAGATCTGATCGGATTGAGGGTTGCGGCAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGATCGA-GGTTGCGGCAGCAGGATCG
* * * * *
19736078 ATAGCACGTAGGGTGGGATCGGGTCGATCCTCGGCTTGTGCATTCAGCCTCTCCGGCGGACTGAG
65 ACAGCACGTAGGG-GGGA-CGGGCCGATCCCCAGCTTGCGCATTCAGCCTCTCCGGCGGACTGAG
* * *
19736143 CGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCCCCAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAG
* * * ** *
19736208 CCTA-ACCAAGTGTTGTGGCT-GCGGGATCGATAACTCGTAGAAGGGGACCGGGCCCATCCCCGA
193 CC-AGACCAAGGGTTGTGG-TAGCGGGATCGACAACACACAGAAGGGGACCGAGCCCATCCCCGA
* * * * * * * *
19736271 CTTGCACGTTATGCCATTTCGGTCGGCTCAGCTCCTGCACGCTCGTTTCATGGGTTGACT
256 CTTGCACATTATGCCACTTCGGCCAGCTCAGCTCCCGAACACTCATTTCATGGGTTGACT
* * * * ** * ** *
19736331 TAGGCATACGCAGTTCATTCCTAGTCTAAGATCGGATCAAACCGACGGTTGTAGCAGCAAGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGATCGA-GGTTGCGGCAGCAGGATCG
** * * * *
19736396 ACAGCACGTA-GGGGGACCGAACCGGTCCCCAACTTGCGCATT-ATGCCTCTCTGGCCGACTGAG
65 ACAGCACGTAGGGGGGA-CGGGCCGATCCCCAGCTTGCGCATTCA-GCCTCTCCGGCGGACTGAG
* *
19736459 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
19736496 CGGAGTTAAT
Statistics
Matches: 397, Mismatches: 73, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
312 38 0.10
313 30 0.08
314 3 0.01
315 1 0.00
316 74 0.19
317 55 0.14
318 193 0.49
319 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (315 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGATCGAGGTTGCGGCAGCAGGATCGA
CAGCACGTAGGGGGGACGGGCCGATCCCCAGCTTGCGCATTCAGCCTCTCCGGCGGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCA
GACCAAGGGTTGTGGTAGCGGGATCGACAACACACAGAAGGGGACCGAGCCCATCCCCGACTTGC
ACATTATGCCACTTCGGCCAGCTCAGCTCCCGAACACTCATTTCATGGGTTGACT
Found at i:19736857 original size:26 final size:26
Alignment explanation
Indices: 19736821--19736899 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
19736811 GTCGACTTAG
19736821 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19736847 GCATACGGAGTTCA-ACCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
19736873 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19736899 G
1 G
19736900 ATCGGACCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.06
26 41 0.87
27 3 0.06
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.