Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 182 of 402
Found at i:19737639 original size:335 final size:335
Alignment explanation
Indices: 19737028--19737643 Score: 753
Period size: 335 Copynumber: 1.8 Consensus size: 335
19737018 GGGTTGGCTT
* * *
19737028 TGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAAGGTTGTGGTAGTGAGACCGG
1 TGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAACCGAACCGAAGGTTGTGGCAGCGAGACCGG
* * * *
19737093 CAGTACGCAGAAGGGGTCCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTCCGATAGGCTCAGT
66 CAGCACGCAGAAGGGGTCCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGAGAGGCTCAGC
* * * * *
19737158 GCTCGAATGCTCGTTGTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCAGAG
131 GCCCGAACGCTCATTGTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * ** ***
19737223 CGGATCGAGGGTTATGATAGTAGGATCGATAGCACGTACGGGGGGACCGGGTCAGTCCCTGGCTT
196 CAGACCGAGGGTTACGATAGTAGGATCGACAGCACGCACGGGGGGAACAAGTCAGTCCCCAACTT
19737288 GCACATTCTACCTCTCCGGCCGACTGGCTCGATCCCCGGCTTGTGCATTCTATCGCTCCGATCGG
261 GCACATTCTACCTCTCCGGCCGACTGGCTCGATCCCCGGCTTGTGCATTCTATCGCTCCGATCGG
19737353 CTGAGGGTTA
326 CTGAGGGTTA
* * * *
19737363 TGGCATAGGGAGTTAATTCCATTTCTAAGCCCCAGCC-AGACC-AAGGGTTGTGGCAGCGGGATC
1 TGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAACCGA-ACCGAA-GGTTGTGGCAGCGAGACC
* * * *
19737426 GGTAGCACGCAGAGGGGGAT-TGGGCCGAT-CCCTGACTTGCGCATTATGCCTCTCCGACGA-GC
64 GGCAGCACGCAGAAGGGG-TCCGGGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGA-GAGGC
* *
19737488 TCAGCGCCCGCACGCTCATT-TAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGGTCTAAG
126 TCAGCGCCCGAACGCTCATTGT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAG
* * *
19737552 ATC-GAACCAGACCGAGGGTTGCGATAGTAGGATCGACAGCATGCA-GGGGGGAACAAGTCGGTC
189 ATCAG-ACCAGACCGAGGGTTACGATAGTAGGATCGACAGCACGCACGGGGGGAACAAGTCAGTC
** *
19737615 CCCAACTTGTGCATTCTGCCTCTCCGGCC
253 CCCAACTTGCACATTCTACCTCTCCGGCC
19737644 AGTTGAGCAC
Statistics
Matches: 234, Mismatches: 39, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
334 8 0.03
335 183 0.78
336 43 0.18
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (335 bp):
TGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAACCGAACCGAAGGTTGTGGCAGCGAGACCGG
CAGCACGCAGAAGGGGTCCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGAGAGGCTCAGC
GCCCGAACGCTCATTGTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTACGATAGTAGGATCGACAGCACGCACGGGGGGAACAAGTCAGTCCCCAACTT
GCACATTCTACCTCTCCGGCCGACTGGCTCGATCCCCGGCTTGTGCATTCTATCGCTCCGATCGG
CTGAGGGTTA
Found at i:19739491 original size:26 final size:26
Alignment explanation
Indices: 19739461--19739513 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19739451 GTTGACTTAG
19739461 GCATATGGAGTTCA-TCCCAAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
19739487 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19739513 G
1 G
19739514 ATCAGAGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:19739766 original size:871 final size:873
Alignment explanation
Indices: 19737771--19740016 Score: 2469
Period size: 871 Copynumber: 2.5 Consensus size: 873
19737761 AGCATGACCA
* * ** ** *
19737771 GCAGCAGGATCAGCAGCACGCTAGGAGGGACTGAATCAATCCCCAACTTGCGCCATTCTGCCTCT
1 GCAGCAGGATC-GAAGCACGC-AGGAGGGACCGAGGCAATCCCCGGCTTGCG-CATTCTACCTCT
* * * * ** * * * *
19737836 CCGGCTGGCTGAGCCCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTTATTCCAT
63 CCGGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCAT
* * * * ** *
19737901 GTCTAAGCCCTAGCCAGACCGAGGGTTGTCATAGTAGAATTGACAGGGGGATCAGCCGCACGTAG
128 GTCTAAGCCCCAGTCAGACCGA-GG--GT--T-GT-G----G-CAGCGGGACCAGTAGCACGCAG
* * * * *
19737966 AG-GGTGA-CCAGGCTGATCCTCGACTTGTACATTATGCCTCTTTGGTCGG-TCGAGCACCCGTA
181 AGAGG-GATCGA-GCTGATCCCCGACTTGTGCATTATGCCTCTTCGATCGGCTC-AGCACCCGTA
* ** * * *
19738028 CACTCATTTTATGGGTTGACTTAGGCATATGGAGTTCATTCCCATTCTAAGATCAGACCGGACCG
243 CATTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * * *
19738093 AGGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGGACCGAATCGGTCCCCGGCTTGTGCATTC
308 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGA-CGGACCGAT-CCCGACTTGCGCATTC
* * *
19738158 TGCCTCTTCGACCGGTTGAGCACC-CA--CACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAG
371 TGCCTCTTCGACCGGTTGAACGCCGCACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* * * * *
19738220 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCATTCAAAGATCGGACCGGATCGAGGGTTGT
436 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGA
* * * *
19738285 GACTGCAGGACCAGCAGCAGGATCGGTAGCACGCAGAGAGGGATGCAGTCGATCCCTAACTTGTG
501 GACTGCAGGACCAGCAGCAGGATCGGCAGCACACAGAGAGGGACGCAGTCGATCCCTAACTTGTC
* * * *
19738350 AATTCTACCTTTCCTGTCGGCTAAACACCCGCACGCTCATTTCTTGGGTTGGCTTCGGCATGTGA
566 AATTCTACCTCTCCTGCCGGCTAAACACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATGTGA
19738415 AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCAACAATCGGATC
631 AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGT----G--GGA-CAAC-A-CGGATC
* * *
19738480 GATAGCACACAGAGTGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTTCGATCGACCTT
687 GACAGCACACAGAGTGGGACCAGGCTGATCCTCGACTTACGCATTATGCCTCTCCGATCGACCTT
* * *
19738545 TCAGGTCGACTGAGCGATCGCAAGCTCGTTTCATGGGTTGAATTAGGCATATGAAGTTCATCCCC
752 CCAGGTCGACTGAGCGACCGCAAGCTCGTTTCATGGGTTGAATTAGGCATATGAAGTTCATCCCA
*
19738610 AGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCC
817 AGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAC
* * * * * *
19738667 GCAGCAGGATCGAAGCACGCAGGGGGGACCGAGTCAATCCTCGGCTTGCGTATTCTGCTTCTCCG
1 GCAGCAGGATCGAAGCACGCAGGAGGGACCGAGGCAATCCCCGGCTTGCGCATTCTACCTCTCCG
* * * * * *
19738732 GTCGGTTGAGTGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 GCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTC
* * *
19738797 TAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGAGGGATCGAGCTG
131 TAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCAGTAGCACGCAGAGAGGGATCGAGCTG
* * * *
19738862 ATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCTGTACATTCATTTCGTGGGTTG
196 ATCCCCGACTTGTGCATTATGCCTCTTCGATCGGCTCAGCACCCGTACATTCATTTCGTGGGTTG
* * ** *
19738927 ACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTACGGCAGCAGGA
261 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* *
19738992 TCGACAGCACGCAGGGGGGACGGGACCGATCCCTGACTTACGCATTCTGCCTCTTCGACCGGCTG
326 TCGACAGCACGCAGGGGGGAC-GGACCGATCCC-GACTTGCGCATTCTGCCTCTTCGACCGGTTG
*
19739057 AACGCCTGCACGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
389 AACGCC-GCACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
19739122 CATAGGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTGCAGTAGT-C-GGACCAGT
453 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-AG-ACTGCAGGACCAGC
* * * *
19739185 AGCAGGATTGGCAGCACACAG-GGGGGAC-CGGGTCGATCCCTAGCTTG-CACATTCTACCTCTC
516 AGCAGGATCGGCAGCACACAGAGAGGGACGC-AGTCGATCCCTAACTTGTCA-ATTCTACCTCTC
* * *** *
19739247 C-GACCGGTTGAGTGCCCGCACTCTCATTTCGTGGGTTGGCTTAGGCATG-G-AGTTCATTCCAT
579 CTG-CCGGCTAAACACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATGTGAAGTTCATTCCAT
** * *
19739309 GTCTAAGCCCCAGTCGGACCGAGGGTAT-T-GG-CAAC-CGGATTGACAGCACGCAGAG-GGGTA
643 GTCTAAGCCCCAACCGGACCGAGGGT-TGTGGGACAACACGGATCGACAGCACACAGAGTGGG-A
* * ** * * * *
19739369 CCAGGTTGATCC-CTGGCTTGTGCATTATGCCTCTCCGGTCGGCCTCTCCA-GTCGGCTGAGCGC
706 CCAGGCTGATCCTC-GACTTACGCATTATGCCTCTCCGATCGACCT-TCCAGGTCGACTGAGCGA
* * * * *
19739432 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCAAGTCTAAGCATATGGAG
769 CCGCAAGCTCGTTTCATGGGTTGAATTAGGCATATGAAGTTCATCCCAAGTCTAAACATACGGAG
**
19739497 TTCATTCCCAGTCTAAGATCAGAGTGGACCGAGGGTT-AC
834 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAC
* *
19739536 GACAGCAGGATCGATAGCATGCAGGAGGGACTG-GGCGAATCCCCGGCTTGCGCATTCTACCTCT
1 G-CAGCAGGATCGA-AGCACGCAGGAGGGACCGAGGC-AATCCCCGGCTTGCGCATTCTACCTCT
* *
19739600 TCGGCCGGCTGAGCGCCCGCACGTCCATTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCAT
63 CCGGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCAT
* * *
19739665 GTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGTGGGACCAGTAGCACGCAGAGGGGGAT-TAG
128 GTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCAGTAGCACGCAGAGAGGGATCGAG
* * * * *
19739729 GTCGATCCCCGACTTATGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTT-ATTTCGTT
193 CT-GATCCCCGACTTGTGCATTATGCCTCTTCGATCGGCTCAGCACCCGTAC-ATTCATTTCGTG
* * * *
19739793 GGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACCGAGGGTTGCAGCAG
256 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
** * * * * * **
19739858 CAGGATCGACAGCACATAGGGGGGACCGAGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGGTC
321 CAGGATCGACAGCACGCAGGGGGGACGGA-CCGATCCCGA-CTTGCGCATTCTGCCTCTTCGACC
* * * * *
19739923 AGTTG-A-G-CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCTGTT
384 GGTTGAACGCCGCACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
19739985 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT
449 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT
19740017 TTTGAGTCAC
Statistics
Matches: 1149, Mismatches: 176, Indels: 79
0.82 0.13 0.06
Matches are distributed among these distances:
867 79 0.07
868 1 0.00
869 7 0.01
870 178 0.15
871 313 0.27
872 2 0.00
873 4 0.00
875 2 0.00
880 4 0.00
881 186 0.16
882 44 0.04
883 7 0.01
884 69 0.06
885 117 0.10
886 3 0.00
887 4 0.00
888 1 0.00
890 2 0.00
892 2 0.00
893 81 0.07
894 24 0.02
895 8 0.01
896 11 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (873 bp):
GCAGCAGGATCGAAGCACGCAGGAGGGACCGAGGCAATCCCCGGCTTGCGCATTCTACCTCTCCG
GCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTC
TAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCAGTAGCACGCAGAGAGGGATCGAGCTG
ATCCCCGACTTGTGCATTATGCCTCTTCGATCGGCTCAGCACCCGTACATTCATTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
TCGACAGCACGCAGGGGGGACGGACCGATCCCGACTTGCGCATTCTGCCTCTTCGACCGGTTGAA
CGCCGCACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGACTGCAGGACCAGCAGCAG
GATCGGCAGCACACAGAGAGGGACGCAGTCGATCCCTAACTTGTCAATTCTACCTCTCCTGCCGG
CTAAACACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATGTGAAGTTCATTCCATGTCTAAGC
CCCAACCGGACCGAGGGTTGTGGGACAACACGGATCGACAGCACACAGAGTGGGACCAGGCTGAT
CCTCGACTTACGCATTATGCCTCTCCGATCGACCTTCCAGGTCGACTGAGCGACCGCAAGCTCGT
TTCATGGGTTGAATTAGGCATATGAAGTTCATCCCAAGTCTAAACATACGGAGTTCATTCCCAGT
CTAAGATCAGACCGGACCGAGGGTTGAC
Found at i:19740014 original size:26 final size:26
Alignment explanation
Indices: 19739959--19740014 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19739949 TGGGTTGGCT
* *
19739959 TAAGCATACGGAGTTCATTCCCTGTT
1 TAAGCATACGGAGTTCATTCCCAGTC
19739985 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19740011 TAAG
1 TAAG
19740015 ATTTTGAGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19740716 original size:26 final size:26
Alignment explanation
Indices: 19740686--19740738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19740676 GTTGACTTAG
19740686 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
19740712 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
19740738 G
1 G
19740739 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:19741105 original size:158 final size:158
Alignment explanation
Indices: 19740850--19741145 Score: 346
Period size: 158 Copynumber: 1.9 Consensus size: 158
19740840 CCCATGCGCC
* * * * *
19740850 CATTTCGTGGGTTGACTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGGT
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCATGTCTAAGACCAGTCGAACCGAGGGT
** * * * * * * **
19740915 TGTGGCAGCGAGACCGACAGTACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGTGCATTATGCC
66 TGCAGCAGAGAGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCC
*
19740980 TTTTCGGTCAGCTCAACGAATGCACGCT
131 TCTTCGGTCAGCTCAACGAATGCACGCT
* *
19741008 CATTTCGTGGGTTGACTTAGGCATACGGAGTTAATTTCCA-GTCTAAGATCAGATCGAACTGAGG
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTAA-TTCCATGTCTAAGACCAG-TCGAACCGAGG
** * *
19741072 GTTGCAGCAGTAG-GATTGACAGCATGCAG-GGGGGATCGAGCCGATCCCCAGCTTACGCATTCT
64 GTTGCAGCAG-AGAGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTACGCATTAT
19741135 GCCTCTTCGGT
128 GCCTCTTCGGT
19741146 TGTTTCGTGT
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 78 0.69
159 34 0.30
160 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (158 bp):
CATTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCATGTCTAAGACCAGTCGAACCGAGGGT
TGCAGCAGAGAGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCC
TCTTCGGTCAGCTCAACGAATGCACGCT
Found at i:19741196 original size:26 final size:26
Alignment explanation
Indices: 19741167--19741218 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19741157 TTGGCTTAGT
*
19741167 CATACGGAGTTTATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
19741193 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
19741219 ATCATACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:19741577 original size:26 final size:26
Alignment explanation
Indices: 19741540--19741592 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19741530 GTTGACTTAG
19741540 GCATACGAAGTTCA-TCGCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
19741566 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19741592 G
1 G
19741593 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19741775 original size:26 final size:26
Alignment explanation
Indices: 19741735--19741787 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19741725 GTTAGCTTAG
19741735 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
* *
19741761 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19741787 G
1 G
19741788 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19748410 original size:28 final size:26
Alignment explanation
Indices: 19748360--19748411 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 26
19748350 GGGTTCCACT
*
19748360 AGCATACGAAAGTTCATCCCAGTCTA
1 AGCATACAAAAGTTCATCCCAGTCTA
19748386 AGCATACAAAATGTTCACTCCCAGTC
1 AGCATACAAAA-GTTCA-TCCCAGTC
19748412 CATGATCGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 10 0.43
27 5 0.22
28 8 0.35
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (26 bp):
AGCATACAAAAGTTCATCCCAGTCTA
Found at i:19748696 original size:158 final size:159
Alignment explanation
Indices: 19748421--19750365 Score: 976
Period size: 158 Copynumber: 12.2 Consensus size: 159
19748411 CCATGATCGG
* * * ** * * * * * *
19748421 GACCGGACCGAGGGTTGCGACAGCAGGATTGATAGCACGCAG-GGGGGACTGGGCCAAACCTCGG
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA
* * * * * * **
19748485 CTTGCGCATTCTACCTCTCCGACCGGAT-AA-GTACCCGCACAC-CCGTTCTGTGGGTTGGCTTA
66 CTTGCGCATTATGCCTCTCCGATCGGCTCAACG--CCTGCACGCTCATTTC-GTGGGTTGGCTTA
*
19748547 GGCATAGGGAGTTCATTCCATGTCTAAGCCCA
128 GGCATACGGAGTTCATTCCATGTCTAAGCCCA
* *
19748579 G-CCGGACCGAGGGTTGTGGCAGCGGGACC-AGCAGCACGCAGAGGGGGACCGGGCCGATCCCCG
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGA-CAGCACGCAGAGGGGGACCGGGCCGATCCCCG
* * *
19748642 ACTTGCGCATTATGCCTCTTCGGTCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGACTTAGG
65 ACTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGGCTTAGG
**
19748707 CATACGGAGTTCATTCACA-GTCTAAGATCA
130 CATACGGAGTTCATTC-CATGTCTAAGCCCA
** * * * * *
19748737 GACCAGTTCGAGGGTTGTAGCAGCAGGATCGACAGCATGC--AGGGGGACCGGGCCGATCCTCGG
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA
* * * * ** * * * * *
19748800 CTTGTGCATTCTACCTCTCCGATCGGCTGAGTGCCCGCGCGCCCGTTTCATGGGTTGGCTTAGGC
66 CTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGC
*
19748865 ATAGGGAGTTCATTCCATGTCTAAGCCCA
131 ATACGGAGTTCATTCCATGTCTAAGCCCA
* * *** * * * * * *
19748894 G-TCGGACCGAGGGTTGTCATAGCGGGACCAATAGCACGCAGAGGGGGATCGGGCTGATCCTCGA
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA
* ** * *
19748958 CTTGTGCATTATGCCTCTCCGATCGGCTCAGTGCCTGCACGCTCATTTGGTGGGTTGACTTAGGC
66 CTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGC
** *
19749023 ATACGGAGTTCATTCC-TAGTCTAAGATCG
131 ATACGGAGTTCATTCCAT-GTCTAAGCCCA
* * * * * *
19749052 GACCAGACCGAGGGTTGTAGCAGTAAGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGG
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA
* * * * * * * * *
19749116 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGAACGCCCGTTTCATGGGTTGGCTTAGGC
66 CTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGC
*
19749181 ATAGGGAGTTCATTCCATGTCTAAGCCCA
131 ATACGGAGTTCATTCCATGTCTAAGCCCA
* * * * *** *
19749210 -ACCGGATCGAGGGTTGTGGCAGCAGGA-CTAGCAGCACACAGAAAAGGACCGGGTCGATCCCCG
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGA-CAGCACGCAGAGGGGGACCGGGCCGATCCCCG
* * * * * *
19749273 ACTTGCGCATTATGCCTCTCTGACCGGCTCAACGCCTGCATGCTCGTTTCGTGGTTTGACTTAGG
65 ACTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGGCTTAGG
* **
19749338 CATACAGAGTTCATTCCCA-GTCTAAGATCA
130 CATACGGAGTTCATT-CCATGTCTAAGCCCA
* * * * * * * *
19749368 GACCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGGAGGGGGGGATCGAGCCGATCCCCGG
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA
* * * * * ** *
19749433 CTTGCGCGTTCTACCTCTCCG-GCTGGCT-GA-GCACTCGCACTTTCATTTCATGGGTTGGCTTA
66 CTTGCGCATTATGCCTCTCCGATC-GGCTCAACGC-CT-GCACGCTCATTTCGTGGGTTGGCTTA
** * *
19749495 GGCATACAAAGTTCATTTCATGTCTAAGCATACA
128 GGCATACGGAGTTCATTCCATGTCTAAGC--CCA
* ** * *** * ** ** *
19749529 GAGTTCATTCCTAGTCCATGATCGG-ATC-GGACCGAGGGTTGCGACAGCAGGATCGATAGCACG
1 GA--CCAGACCGAG-GGTTG-T-GGCAGCAGGACCGA---CAGC-AC-GCA-GA--G-GGGGAC-
** * ** ** * ** * * *
19749592 CAGGGGGGA-CCGGGCTGAAC-CCCGGC-TTGCGCATTCTGCCTCTCCGAC-CGGTTAAG--TGC
51 C-GGGCCGATCC---CCG-ACTTGC-GCATTATGC-CTCT-CCGAT-CGGCTC---AACGCCTGC
* *** ** * * ** * * **
19749651 CCG-T-AGCCCGTTTCG-TGGGTT-GGCTTA-GGCA-TAGGGAGTT-CAT-TCCATGTCTAA
104 ACGCTCATTTCG-TGGGTTGGCTTAGGCATACGG-AGT--TCA-TTCCATGTCTAAG-CCCA
* * * *
19749705 GCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACC-AGCAACACGCAGAGGGGGACCAGGTCGATC
1 GACCA----GACCGAGGGTTGTGGCAGCAGGACCGA-CAGCACGCAGAGGGGGACCGGGCCGATC
* * * * * *
19749769 CCCGACTTGCACATTATGCTTCTCTGGTCGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACT
61 CCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGGCT
* ** *
19749834 TAGGCATACGGAGTTCATT-CGTAGTCTAAGATCG
126 TAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCA
* * * * * * *
19749868 GACCGGATCGAGGGTTGTGGTAGCAGGATCGATAGCACTCAG-GGGGGACCGGGCCGATCCCCGG
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA
* * * * ** * *
19749932 CTTG-GTCATTCTACCTCTTCGATCGGCTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGG
66 CTTGCG-CATTATGCCTCTCCGATCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGGCTTAGG
* *
19749996 CATAGGGAGTTCATTCCATGTCTAAGCCAA
130 CATACGGAGTTCATTCCATGTCTAAGCCCA
* * * *
19750026 G-CCGGACCGAGGGTTGTGGCAGCAGGACC-AGCAGCACGTAGAGGGGGACCAGGTCGATCCCCG
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGA-CAGCACGCAGAGGGGGACCGGGCCGATCCCCG
* ** * ** * * *
19750089 ACTTGTGCATTATGCCTCTCCGGCCAGCTCAGTGCCTGCACGCTCGTTTTGTGGGTTGACTTAGG
65 ACTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGGCTTAGG
** **
19750154 CATATAGAGTTCATTCCCA-GTCTAAGATCA
130 CATACGGAGTTCATT-CCATGTCTAAGCCCA
* * * * * * * * * * * * *
19750184 GATCGGATCGAAGGTTGTAGCAACAAGATCAACAGCACGC--AGGGGGATCGAGCTGATCCCCAA
1 GACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA
* * * * * * *
19750247 CTTGCGTATTCTACCTCTCCGACCGCCT-GA-GCACTCGCACGCTCGTTTCGTGGGTTGGCTTAG
66 CTTGCGCATTATGCCTCTCCGATCGGCTCAACGC-CT-GCACGCTCATTTCGTGGGTTGGCTTAG
** *
19750310 GCATACGGAGTTCATTCCCA-GTCTAAGATCG
129 GCATACGGAGTTCATT-CCATGTCTAAGCCCA
*
19750341 GACCAGACCGAGGGTTGTGGTAGCA
1 GACCAGACCGAGGGTTGTGGCAGCA
19750366 AGACTAACAG
Statistics
Matches: 1336, Mismatches: 359, Indels: 185
0.71 0.19 0.10
Matches are distributed among these distances:
155 2 0.00
156 34 0.03
157 303 0.23
158 560 0.42
159 243 0.18
160 6 0.00
161 12 0.01
162 10 0.01
163 24 0.02
164 25 0.02
165 6 0.00
166 6 0.00
167 5 0.00
168 5 0.00
169 3 0.00
170 1 0.00
171 2 0.00
172 4 0.00
173 4 0.00
174 7 0.01
175 6 0.00
176 7 0.01
177 23 0.02
178 22 0.02
179 7 0.01
180 5 0.00
181 2 0.00
183 1 0.00
184 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA
CTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCA
Found at i:19750102 original size:316 final size:317
Alignment explanation
Indices: 19749522--19750336 Score: 1115
Period size: 316 Copynumber: 2.6 Consensus size: 317
19749512 TCATGTCTAA
* * * * *
19749522 GCATACAGAGTTCATTCCTAGTCCATGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGATA
* * * *
19749587 GCACGCAGGGGGGACCGGGCTGAACCCCGGCTTGCG-CATTCTGCCTCTCCGACCGGTTAAGTGC
66 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGTCATTCTACCTCTCCGACCGGCTGAGTGC
* * * *
19749651 CCGTA-GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGG
131 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAAGCCGG
19749715 ACCGAGGGTTGTGGCAGCAGGACCAGCAACACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCA
196 ACCGAGGGTTGTGGCAGCAGGACCAGCAACACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCA
* * * *
19749780 CATTATGCTTCTCTGGTCGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
261 CATTATGCCTCTCCGGCCAGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
19749837 GCATACGGAGTTCATTCGTAGTCTAAGATCGGACCGGATCGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGATA
* * * *
19749902 GCACTCAGGGGGGACCGGGCCGATCCCCGGCTTG-GTCATTCTACCTCTTCGATCGGCTGAGTGC
66 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGTCATTCTACCTCTCCGACCGGCTGAGTGC
19749966 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAAGCCGG
131 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAAGCCGG
* * **
19750031 ACCGAGGGTTGTGGCAGCAGGACCAGCAGCACGTAGAGGGGGACCAGGTCGATCCCCGACTTGTG
196 ACCGAGGGTTGTGGCAGCAGGACCAGCAACACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCA
* * *
19750096 CATTATGCCTCTCCGGCCAGCTCAGTGCCTGCACGCTCGTTTTGTGGGTTGACTTAG
261 CATTATGCCTCTCCGGCCAGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * * * * *
19750153 GCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGTTGTAGCAACAAGATCAACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGATA
* * ** *
19750218 GCACGCA-GGGGGATCGAGCTGATCCCCAACTTGCGT-ATTCTACCTCTCCGACCGCCTGA--GC
66 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGTCATTCTACCTCTCCGACCGGCTGAGTGC
* *
19750279 ACTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
131 -CT-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
19750337 ATCGGACCAG
Statistics
Matches: 438, Mismatches: 56, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
313 2 0.00
314 3 0.01
315 202 0.46
316 231 0.53
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGTCATTCTACCTCTCCGACCGGCTGAGTGC
CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAAGCCGG
ACCGAGGGTTGTGGCAGCAGGACCAGCAACACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCA
CATTATGCCTCTCCGGCCAGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:19750518 original size:26 final size:26
Alignment explanation
Indices: 19750482--19750532 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19750472 TGACTTAGGT
*
19750482 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
*
19750508 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
19750533 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:19751036 original size:26 final size:26
Alignment explanation
Indices: 19750986--19751038 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19750976 GTTAGCCTAG
* *
19750986 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
19751012 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
19751038 G
1 G
19751039 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:19751397 original size:26 final size:26
Alignment explanation
Indices: 19751367--19751419 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19751357 GTTAACTTAG
* *
19751367 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
19751393 GCATACAGAGTTTATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
19751419 G
1 G
19751420 ATCGTACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:19751881 original size:161 final size:159
Alignment explanation
Indices: 19751520--19751896 Score: 417
Period size: 161 Copynumber: 2.4 Consensus size: 159
19751510 GCTAAGCGCC
* * *
19751520 CGCACGTTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCCG
1 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCCG
* * * * * *
19751585 ACCGAAGGTTGTGGTAGCGGGACTAAGAGCACGCAGAGGGGGATCAGGTCGATCCCCGGCTTGCG
66 ACCGAAGGTTGTGGCAGCAGCACTAACAGCACACAAAGGGGGATCAGGTCGATCCCCGGCTTGCG
* *
19751650 CATTATGCCTCTTCGATCGGTTCAGCACT
131 CATTATGCCTCTCCGATCAGTTCAGCACT
* * ** * *
19751679 CGCACGCTCATATT-GTGGGTTCACTTAGCCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGAT
1 CGCACGCTCGT-TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG-T
* * *
19751741 CGGACCGAGGGTTGTGGC-GCAGCAGCATCGACAGCACACAAAGGGGGATCAGGTCGATCCCCGG
63 CCGACCGAAGGTTGTGGCAGCAGCA-C-T-AACAGCACACAAAGGGGGATCAGGTCGATCCCCGG
* *
19751805 CTTGCGCATTCTAG-CTCTCCGATCAGTTGAGTGC-CT
125 CTTGCGCATTAT-GCCTCTCCGATCAGTTCA--GCACT
*
19751841 -GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
19751897 TATAGAGTTC
Statistics
Matches: 178, Mismatches: 28, Indels: 21
0.78 0.12 0.09
Matches are distributed among these distances:
158 8 0.04
159 60 0.34
160 5 0.03
161 98 0.55
162 5 0.03
163 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCCG
ACCGAAGGTTGTGGCAGCAGCACTAACAGCACACAAAGGGGGATCAGGTCGATCCCCGGCTTGCG
CATTATGCCTCTCCGATCAGTTCAGCACT
Found at i:19751898 original size:26 final size:26
Alignment explanation
Indices: 19751868--19751919 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19751858 GTTGGCTTAG
19751868 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19751894 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19751920 CATCGAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19751941 original size:882 final size:875
Alignment explanation
Indices: 19750447--19752808 Score: 2491
Period size: 894 Copynumber: 2.7 Consensus size: 875
19750437 AGCCGGCAGG
* *
19750447 GCGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATAC
1 GCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * *
19750512 -GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TGCAGGCAGTAGGATGGGCGACAA
66 AG-AGTTCATTCCCAATCTAAGATC-GACCGGACCGAGGGTTGC-GGTAGCAGGAT---CG-GAA
* * * * *
19750575 GCACGCAGGGGGTAACCAGAGTCGTATCCCCGACTTACGCATTTCTGGCCTCTTCCAGCTGGCTG
124 GCACG-AGGGGG--ACC-GGGCCG-ATCCCCGACTTATGCA-TTCT-GCCTCTTCGATC-GGCTG
* * * *
19750640 AGTGCCCGCACG-CCGTTTTTC-TTGGTTGGCATTAGGCATA-GG-GTGCATGTTCCAT-TTTAA
181 AGCGCCCGCACGTCCG--TTTCATGGGTTGGC-TTAGGCATAGGGAGTTCA--TTCCATGTCTAA
*
19750700 GCCCACAGTCAG-TCGAGGGTTGTGGCAGC-GGACT-GAGCACG-ATGAGGGGGATCGAGTCGAT
241 GCCC-CAGTCAGACCGAGGGTTGTGGCAGCGGGACTAGAGCACGCA-GAGGGGGATCG-GTCGAT
* * * * * * *
19750761 CCCTGGC-TACGCATTATG-CTCTTCGGCCAGCTCAACAGCCCGCACGCACAGTTTGTAGG-TGA
303 CCCCGGCTTGCGCATTATGCCTCTTC-GCCGGCTCAGCA-CTCGCACGCTCA-TTTGTGGGTTGA
* * * * *
19750823 CTTAGGCATACGGAGTTCATTTCCAGTCTAAGCTCAAATTGGACCGAGGGTTG-CGGCAGTAGGA
365 CTTA-GCATACGGAGTTCA-TTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGGCAGCAGGA
* * * * * * *
19750887 TTGACAGCACGCAGGAGGGATCAGGACGATCCCTGGCTTGCGCATTCTGCCTCTCCGTTTGGCTG
428 TCGACAGCACACAGG-GGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTG
* * *
19750952 AGGGCCTGCACGCTCGTTTCATGGGTTAGCCTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
492 AGTGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
* * * * * * *
19751017 CAGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGTGACAGTAGGACCAGCAGTAGG
557 CAGAGTTCATTCCCAGTCTAACATCAGACCGGACCAAGGGTTGTGACAGCAAGACCAGCAGCAGC
* * * *
19751082 ATCGACAGCACGCAGAGGGGGACCGGGTC-GATCCCCGGCTTACT-CATTCTACCTTTCCGATC-
622 ATCGACAGCACGCAGA-GGGGACCGAG-CAGATCCCCGGCTT-CTGCATTCTACCTCTCCAACCT
* *
19751144 GATTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
684 GATT-AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** * * * **
19751209 GCCCCAATCGGACCGATTGTTGTTGCAACAGGAT-C-G-A-CAGCTGGATCGGCAGCACGCAAAG
748 GCCCCAACCGGACCGAGGGTTATGGCAACAGGATGCGGTAGCAGCGGGATCAACAGCACGCAAAG
* * * * * *
19751270 GGGGACCGGGTTGATCCCCGGCTTTCATATTATGCCTCTT-TGATCGACCACTCCGGTCGATTGA
813 GGGGACC-GGCTGATCCCCGGCTTGCATATTATGCCT-TTCCGATAGACCACTCCGATCGACTGA
* *
19751334 GCGCCTGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
1 GCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * *
19751399 AGAGTTTATTCCCAATCTAAGATCGTACCGGACCGAGGGTTGCGGTAGCAGGATTGGTAGCACGA
66 AGAGTTCATTCCCAATCTAAGATCG-ACCGGACCGAGGGTTGCGGTAGCAGGATCGGAAGCACGA
* * * * * * *
19751464 GAGGGATCGGGCCGATCCCTGGCTTATGCA-TCTACCTCTTCGATCGGCTAAGCGCCCGCACGTT
130 GGGGGACCGGGCCGATCCCCGACTTATGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGTC
* *
19751528 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCCGACCGAAGG
195 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGG
*
19751593 TTGTGGTAGCGGGACTAAGAGCACGCAGAGGGGGATCAGGTCGATCCCCGGCTTGCGCATTATGC
260 TTGTGGCAGCGGGACT-AGAGCACGCAGAGGGGGATC-GGTCGATCCCCGGCTTGCGCATTATGC
* * *
19751658 CTCTTCGATCGGTTCAGCACTCGCACGCTCATATTGTGGGTTCACTTAGCCATACGGAGTTCATT
323 CTCTTCG-CCGGCTCAGCACTCGCACGCTCAT-TTGTGGGTTGACTTAG-CATACGGAGTTCATT
*
19751723 CCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCGCAGCAGCATCGACAGCACACAAAGGGGG
385 CC-AGTCTAAGATCAGATCGGACCGAGGGTTGTGG-GCAGCAGGATCGACAGCACAC--AGGGGG
*
19751788 ATCAGGTCGATCCCCGGCTTGCGCATTCTAG-CTCTCCGATCAGTTGAGTGCCTGCACGCTCGTT
446 ATCAGGTCGATCCCCGGCTTGCGCATTCT-GCCTCTCCGATCGGTTGAGTGCCTGCACGCTCGTT
* *
19751852 TCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTC
510 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTC
* * *
19751917 TAACATC-GAACCGGACCGAGGGTTGTGGCAGCAAGACTAGCAGCAGCATCGACAGCACGCAGAG
575 TAACATCAG-ACCGGACCAAGGGTTGTGACAGCAAGACCAGCAGCAGCATCGACAGCACGCAGAG
* * * *
19751981 GGGACCGAGCAGATCCCCGGCTTGTGCATTCTGCCTCTCCAACCTGCTTAGCGCTCGCACGCTCA
639 GGGACCGAGCAGATCCCCGGCTTCTGCATTCTACCTCTCCAACCTGATTAGCGCCCGCACGCTCA
* * *
19752046 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCTGACCGAGGGTT
704 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
* *
19752111 ATGGCAGCAGGATCGGCAGCGGGTTCAGCAGCGGGATCAACAGCACGCAGAGGGGGACCGGCTGA
769 ATGGCAACAGGAT-----GC-GG-T-AGCAGCGGGATCAACAGCACGCAAAGGGGGACCGGCTGA
* * * * *
19752176 TCCTCGGCTTGCGTATTATGCCTTTCCGGTAGGCCTCTCCGATCGACTGA
826 TCCCCGGCTTGCATATTATGCCTTTCCGATAGACCACTCCGATCGACTGA
* ** * * * *
19752226 GCACCCACATGCTTGTTTCATGGGATGACTTAGGCATACAGAGTTCATCCCCAGTTTAAGCATAC
1 GCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * * * *
19752291 AGAGTTCATTCCCAATCTAAGACCAAACCGAACCGAGGGTTGCAGTAGCCGGATC-GACAGCATG
66 AGAGTTCATTCCCAATCTAAGATC-GACCGGACCGAGGGTTGCGGTAGCAGGATCGGA-AGCACG
* * * * *
19752355 AGGGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCAGCTGAGGGCCCGCACG
129 A-GGGGGACCGGGCCGATCCCCGACTTATGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACG
* *
19752420 TCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAG
193 TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAG
* * * * * * *
19752485 GGTTGTGGCAGTGGGACCGATAGCACACAGAGGGGGATCGGACCGATCCTCGGCTTGCGTATTAT
258 GGTTGTGGCAGCGGGA-CTAGAGCACGCAGAGGGGGATCGG-TCGATCCCCGGCTTGCGCATTAT
* * * * * *
19752550 GCCTCTTCGGCTGGCTCAGCGCTCGGAAGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCA
321 GCCTCTTC-GCCGGCTCAGCACTCGCACGCTCATTT-GTGGGTTGACTTA-GCATACGGAGTTCA
* * * * **
19752615 TTCCAAGTCTAAGATCGGATCGAATCGAGGGTTGTGGG-AACAGGATCGACAGCACGTAGGGGG-
383 TTCC-AGTCTAAGATCAGATCGGACCGAGGGTTGTGGGCAGCAGGATCGACAGCACACAGGGGGA
* * * * * * ** * *
19752678 -GAGTTGCCATCCTCGGCTTGCGCAGTCTGCCTCTCTGGCCGGTTGAGTG-CTCGTATGCTCGTT
447 TCAGGT-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCCT-GCACGCTCGTT
* * * * *
19752741 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGCTCATTCCCAGTC
510 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTC
19752806 TAA
575 TAA
19752809 AATTTTGAGC
Statistics
Matches: 1239, Mismatches: 181, Indels: 108
0.81 0.12 0.07
Matches are distributed among these distances:
873 25 0.02
874 47 0.04
875 20 0.02
876 3 0.00
877 30 0.02
878 47 0.04
879 62 0.05
880 5 0.00
881 135 0.11
882 178 0.14
883 10 0.01
884 1 0.00
886 1 0.00
887 104 0.08
888 10 0.01
889 105 0.08
890 6 0.00
891 3 0.00
892 167 0.13
893 56 0.05
894 221 0.18
895 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (875 bp):
GCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
AGAGTTCATTCCCAATCTAAGATCGACCGGACCGAGGGTTGCGGTAGCAGGATCGGAAGCACGAG
GGGGACCGGGCCGATCCCCGACTTATGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGTCC
GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
TGTGGCAGCGGGACTAGAGCACGCAGAGGGGGATCGGTCGATCCCCGGCTTGCGCATTATGCCTC
TTCGCCGGCTCAGCACTCGCACGCTCATTTGTGGGTTGACTTAGCATACGGAGTTCATTCCAGTC
TAAGATCAGATCGGACCGAGGGTTGTGGGCAGCAGGATCGACAGCACACAGGGGGATCAGGTCGA
TCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCCTGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAACATCAGAC
CGGACCAAGGGTTGTGACAGCAAGACCAGCAGCAGCATCGACAGCACGCAGAGGGGACCGAGCAG
ATCCCCGGCTTCTGCATTCTACCTCTCCAACCTGATTAGCGCCCGCACGCTCATTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAACAGGA
TGCGGTAGCAGCGGGATCAACAGCACGCAAAGGGGGACCGGCTGATCCCCGGCTTGCATATTATG
CCTTTCCGATAGACCACTCCGATCGACTGA
Found at i:19752311 original size:26 final size:26
Alignment explanation
Indices: 19752259--19752311 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19752249 GATGACTTAG
* *
19752259 GCATACAGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
19752285 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
19752311 G
1 G
19752312 ACCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:19752611 original size:159 final size:157
Alignment explanation
Indices: 19752424--19752785 Score: 383
Period size: 156 Copynumber: 2.3 Consensus size: 157
19752414 CGCACGTCCA
* * * *
19752424 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACT-GAGGG
1 TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGATC-GAATCGAGGG
*** * * *
19752487 TTGTGGCAGTGGGACCGATAGCACACAGAGGGGGA-TCGGACCGATCCTCGGCTTGCGTATTATG
65 TTGTGGCAACAGGACCGACAGCACACAG-GGGGGAGT-GG-CC-ATCCTCGGCTTGCGCAGTATG
*
19752551 CCTCT-TCGGCTGGCTCAGCGCTCGGAAGCTCG
126 CCTCTCT-GGCCGGCTCAGCGCTCGGAAGCTCG
* * * * *
19752583 TTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCAAGTCTAAG-ATCGGATCGAATCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGATCGAATCGAGGGT
* * ** * *
19752647 TGTGGGAACAGGATCGACAGCACGTAGGGGGGAGTTGCCATCCTCGGCTTGCGCAGTCTGCCTCT
66 TGTGGCAACAGGACCGACAGCACACAGGGGGGAGTGGCCATCCTCGGCTTGCGCAGTATGCCTCT
* * * * *
19752712 CTGGCCGGTTGAGTGCTCGTATGCTCG
131 CTGGCCGGCTCAGCGCTCGGAAGCTCG
*
19752739 TTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
19752786 TACGGAGCTC
Statistics
Matches: 167, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
156 83 0.50
157 4 0.02
158 12 0.07
159 68 0.41
ACGTcount: A:0.18, C:0.23, G:0.32, T:0.27
Consensus pattern (157 bp):
TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGATCGAATCGAGGGT
TGTGGCAACAGGACCGACAGCACACAGGGGGGAGTGGCCATCCTCGGCTTGCGCAGTATGCCTCT
CTGGCCGGCTCAGCGCTCGGAAGCTCG
Found at i:19752786 original size:26 final size:26
Alignment explanation
Indices: 19752757--19752808 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19752747 GTTGGCTTAG
* *
19752757 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
19752783 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19752809 AATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19755048 original size:158 final size:159
Alignment explanation
Indices: 19754687--19755068 Score: 405
Period size: 158 Copynumber: 2.4 Consensus size: 159
19754677 CTCTGTGGTT
* * * * * *
19754687 GGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * ** * * **
19754752 GCCCCAGTCAGATCGAGGGTTGTGGTAGCGGATCCGACAGCACGCAGAGGGGGACCGAGTTGATC
66 GCACCAGCCAGATCGAGGGTTACGATAGCGGATCCGACAGCACGCAGAGGGGGACAGAGCCGATC
* *
19754817 CTTGGCTTGCGCATTATGCCTCTTCGGCC
131 CCTGGCTTGCGCATTATACCTCTTCGGCC
* * * * **
19754846 GGCTCAGCGCCCGAATGCTTGTTTCGTTGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTA
1 GGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* *
19754910 AG-ATCAGACCGGATCGAGGGTTACGATAGCAGGAT-CGACAGCACGCAG-GGGGGATCAGA-CC
65 AGCACCAG-CCAGATCGAGGGTTACGATAGC-GGATCCGACAGCACGCAGAGGGGGA-CAGAGCC
* * *
19754971 GGTCCCTGGCTTGTGCATTCTACCTCTTCGGCC
127 GATCCCTGGCTTGCGCATTATACCTCTTCGGCC
* ** * *
19755004 GGCTAAGTGGTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
1 GGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
19755069 ACGTATGGAG
Statistics
Matches: 181, Mismatches: 37, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 87 0.48
159 84 0.46
160 7 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCACCAGCCAGATCGAGGGTTACGATAGCGGATCCGACAGCACGCAGAGGGGGACAGAGCCGATC
CCTGGCTTGCGCATTATACCTCTTCGGCC
Found at i:19759917 original size:26 final size:25
Alignment explanation
Indices: 19759884--19759940 Score: 89
Period size: 26 Copynumber: 2.3 Consensus size: 25
19759874 GTTGACTTAG
19759884 GCATCGGAGTTCATCCCCAGTCTAA
1 GCATCGGAGTTCATCCCCAGTCTAA
*
19759909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATCCCCAGTCTAA
19759935 G-ATCGG
1 GCATCGG
19759941 TCCGAACCGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 3 0.10
25 6 0.20
26 21 0.70
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (25 bp):
GCATCGGAGTTCATCCCCAGTCTAA
Found at i:19760397 original size:157 final size:157
Alignment explanation
Indices: 19759909--19760400 Score: 487
Period size: 159 Copynumber: 3.1 Consensus size: 157
19759899 CCCAGTCTAA
* * * *
19759909 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-TCCGAACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGAT-CGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
19759973 AGCACGCAGGAGGGACCGGGCCAATCCCCGGTTTGCGCATTCTACCTCTCCGGTCGGTTGAGGGC
65 AGCAC-AAGGGGGGACAGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
19760038 CCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** * *
19760067 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGC-GAGACTGG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAG-GA-TCG
* * * * *
19760130 TAGCACGCA-AA-GGGGGACCA-GGCCGATCCCCGATTTGTGCATTATGCCTCCCCGGTCGGCTC
63 -A-CA-GCACAAGGGGGGA-CAGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGTCGGCTG
* * *
19760192 AGTGCCCGTACGCTCGTTTCGTGGGTTGACTTGG
124 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
*
19760226 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGA-GGTTGTAGCAGCAGGATCGAC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
19760289 AGCACATAGGGGGGACAGGGTCGATCCTCGGCTTGGGCATTCTGCCTCTTCGGTCGGCTGAGCGC
65 AGCACA-AGGGGGGACAGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
*
19760354 CCGTACGCTCGTTTTGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
*
19760383 GCATACGAAATTCATTCC
1 GCATACGAAGTTCATTCC
19760401 ATATCTAAGC
Statistics
Matches: 268, Mismatches: 50, Indels: 33
0.76 0.14 0.09
Matches are distributed among these distances:
154 3 0.01
155 3 0.01
156 4 0.01
157 90 0.34
158 57 0.21
159 100 0.37
160 6 0.02
161 2 0.01
162 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACAAGGGGGGACAGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19761853 original size:26 final size:26
Alignment explanation
Indices: 19761823--19761875 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19761813 GTTGACTTAG
19761823 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19761849 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19761875 G
1 G
19761876 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19762323 original size:158 final size:158
Alignment explanation
Indices: 19761849--19762689 Score: 601
Period size: 158 Copynumber: 5.2 Consensus size: 158
19761839 CCCAGTCTAA
* * * *
19761849 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTGC-AGCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-ACCGAACCGAGGGTTACGA-CAGCAGGATCGA
* *
19761912 CAGCACACAGGGGGGATCAGGCCGATCCCT-AGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
63 CAGCACACAGGGGGGACCAGGCCGATCCCTGAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * * **
19761976 GCCCGCATGCCCGTTTTGTGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* ** ** * * *
19762007 GCATA-GTGAGTTTATTCCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACG-GAGTTCATTCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTACGACAGCAGGATCGA
* * * * * * *
19762070 CAGCACACAGAGGGGGACCGGGTCAATCCCCG-GCTTGCGCATTATGCCTCTCCGATTGGCTCAG
63 CAGCACACAG-GGGGGACCAGGCCGATCCCTGAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* * * *
19762134 CGCCCACACACTCATATCATGGGTTGACTTAG
127 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
19762166 GCATACGGAGTTCATTACCAGTCTAAGATCAGACCAAACCGAGGGTTACGACTGCAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCGACA
* * * *
19762231 GCACGCAGGGGGGACCAAGCCGATCCCTGA-CTTGTGCATTCTGCCTCTCCGATCGG-TAGAGTG
65 GCACACAGGGGGGACCAGGCCGATCCCTGAGCTTGCGCATTCTGCCTCTCCGATCGGCT-GAGCG
* **
19762294 CCCGCATGCTCATTTCATGGGTCAGCTTAG
129 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
19762324 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGACCAACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGAACCGAGGG-T----TA-C--G----ACA
* * *** * *
19762389 GCAGGATTG-CTAGCACGCAGGGGGGGATTGGGTCGATCCC-CAGCTTGCGCATTCTGCCTCTCC
53 GCAGGATCGAC-AGCACACA-GGGGGGACCAGGCCGATCCCTGAGCTTGCGCATTCTGCCTCTCC
* * *
19762452 GATTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
116 GATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
** * * *
19762495 GCATACGGAGTTCATTCCAGGTCTAAGCCCCA-ATCGGACCGAGGGTGGTAGCAGGACCGGCAGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGAACCGAGGGT--TA-C--GA-CAGCA--
* ** * * * * * *
19762559 TGGATCGGCAGCATGCAGGGGGGGACCAGGCTGAT-CCTCG-GCTTGTGCATTTTACCTCTCTGG
56 -GGATCGACAGCACACA-GGGGGGACCAGGCCGATCCCT-GAGCTTGCGCATTCTGCCTCTCCGA
* * * *
19762622 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
118 TCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
19762663 GCATACGAAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCAT-TCCAGTCTAAG
19762690 CATACGAAGT
Statistics
Matches: 543, Mismatches: 102, Indels: 66
0.76 0.14 0.09
Matches are distributed among these distances:
157 5 0.01
158 161 0.30
159 119 0.22
160 5 0.01
163 2 0.00
164 2 0.00
165 4 0.01
166 1 0.00
167 2 0.00
168 108 0.20
169 4 0.01
170 23 0.04
171 104 0.19
172 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCGACAG
CACACAGGGGGGACCAGGCCGATCCCTGAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:19762699 original size:26 final size:26
Alignment explanation
Indices: 19762663--19762715 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19762653 GTTGACTTAG
19762663 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
19762689 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19762715 G
1 G
19762716 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19762990 original size:159 final size:156
Alignment explanation
Indices: 19762725--19763191 Score: 513
Period size: 158 Copynumber: 3.0 Consensus size: 156
19762715 GATCGGACCG
* * * * * * *
19762725 GATCGAGGGTTGTGGTAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCCAATCCCTGGCTTGCG
1 GATCGAGGGTTGTGGCAGCAGGATC-GCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCG
* * * * ** *
19762790 CATTCTACCTCTTCGATCGGCTGGGCGGCCGCACGCCCGTTTCATGGGTTGGCTTAGGTGTAGGG
65 CATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGG
*
19762855 ATTTCATTCCATGTCTAAGCCCCAGTCA
130 AGTTCATTCCATGTCTAAGCCCCA-TCA
* * *
19762883 GATCGAGGGTTTTGGCAGCGGGACCTGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGC
1 GATCGAGGGTTGTGGCAGCAGGATC-GCAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGC
* ** * * * *
19762948 GCATTATGTCTCTTCGACCGGCTCAGCGCCCGCACTCTCGTTTCATGGGTTGACTTATGCATAAG
64 GCATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAG
* * **
19763013 GAGTTCATTCCCA-GACTAAGATCGTATCA
129 GAGTTCATT-CCATGTCTAAG-CCCCATCA
* * * *
19763042 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCGGATTCCCGACTTGCG
1 GATCGAGGGTTGTGGCAGCAGGATCG-CAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCG
* * * * * *
19763107 TATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCCTATGG
65 CATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGG
19763172 AGTTCATTCCATGTCTAAGC
130 AGTTCATTCCATGTCTAAGC
19763192 ATACGGAGTT
Statistics
Matches: 252, Mismatches: 52, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.01
158 123 0.49
159 121 0.48
160 5 0.02
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (156 bp):
GATCGAGGGTTGTGGCAGCAGGATCGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGC
ATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGA
GTTCATTCCATGTCTAAGCCCCATCA
Found at i:19763475 original size:171 final size:172
Alignment explanation
Indices: 19763230--19763927 Score: 494
Period size: 171 Copynumber: 3.9 Consensus size: 172
19763220 AGACCAGATT
* * * * * *
19763230 GAGGGTTGCGGTAGTAGGACCAGTAGCAGGATCAG-CAACACGCAGGGAGGGATCGGG-TCGATC
1 GAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAGACAACACGCAGAGAGGGATCGGGCT-GATC
* * * * ** **
19763293 CTCTGCTTGCGCATTCTACCTCTCCGGCCGGTTGAGCACCCGCACGCTTGTTTCGGGGGTTGGCT
65 CCCGGCTTGCGCATTATACCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCT
*
19763358 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
130 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
* * * * *
19763401 GAGGGTTGTGGCAGCAGGACTAGCAGCGGGATCAG-CAGCATGTAGAGAGGGATCGGGCTGATCT
1 GAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAGACAACACGCAGAGAGGGATCGGGCTGATCC
* * *
19763465 CTGGCTTGCGCATTATACCTCTCAGGCTGGCCTCTCTGGCTAGCTGAGCACCCACACGCTCGTTT
66 CCGGCTTGCGCATTATACCTCTC---C-GG---C-C--G---GCTGAGCACCCGCACGCTCATTT
* * * * * ** **
19763530 CGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTAAGCATACAGAGTTCATTCC
118 CATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC---CCCAG-TCAGACC
* ** * * * ** * *
19763589 CAGTCTAAGATCGGTCTAGATCGAGGGCTGCGGCAGTAGGAT-AGACAGCACACA-AGAGGGATC
1 GAGGGT-TG-T-GG-C-AG--C-AGGAC--CAGCAGCGGGATCAGACAACACGCAGAGAGGGATC
* * * * * **
19763652 AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGTCCGCACGCTCATTTCAT
56 GGGCTGATCCCCGGCTTGCGCATTATACCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCAT
* * *
19763717 GGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAAGCCCTAGCCAGACC
121 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
* * * * *
19763769 GAGGGTTGTGGCAGCAAGACCGGCAGCGGGTTC-GACAACATGCAGAGGGGGA-CTGGGCTGATC
1 GAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAGACAACACGCAGAGAGGGATC-GGGCTGATC
* * ** * *
19763832 CCCGGCTTGCGCATTATGCATCTCCGGTTGGCTAAGCACCCGCACACTCATTTCATGGGTTGGCT
65 CCCGGCTTGCGCATTATACCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCT
*
19763897 TAAGCATACGGAGTTCATTCCATGTCTAAGC
130 TAGGCATACGGAGTTCATTCCATGTCTAAGC
19763928 ATATGGAGTT
Statistics
Matches: 405, Mismatches: 88, Indels: 68
0.72 0.16 0.12
Matches are distributed among these distances:
170 18 0.04
171 168 0.41
172 4 0.01
173 1 0.00
174 1 0.00
175 4 0.01
176 1 0.00
177 2 0.00
178 2 0.00
179 2 0.00
180 7 0.02
181 4 0.01
183 2 0.00
184 107 0.26
185 3 0.01
187 4 0.01
188 7 0.02
189 2 0.00
190 2 0.00
191 2 0.00
192 1 0.00
193 3 0.01
194 1 0.00
195 1 0.00
196 4 0.01
197 38 0.09
198 14 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (172 bp):
GAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAGACAACACGCAGAGAGGGATCGGGCTGATCC
CCGGCTTGCGCATTATACCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
Found at i:19763582 original size:26 final size:26
Alignment explanation
Indices: 19763545--19763597 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19763535 GTTGACTTAG
19763545 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
19763571 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
19763597 G
1 G
19763598 ATCGGTCTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:19763797 original size:368 final size:367
Alignment explanation
Indices: 19763126--19764528 Score: 1457
Period size: 368 Copynumber: 3.8 Consensus size: 367
19763116 TCTCCGGCCG
* * * * * * * * *
19763126 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCCTATGGAGTTCATTCCATGTCTAAG
1 GCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAG
* * *
19763191 CATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGTAGTAGGACCAGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGA-C--TAG
* * * * * *
19763256 CAGGATCAGCAACACGCAGGGAGGGATCGGGTCGATCCTCTGCTTGCGCATTCTACCTCTCCGGC
128 -A-G--CAGC-ACAC-CA-GGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
* * * **
19763321 CGGTTGAGCACCCGCACGCTTGTTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
186 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* ** *
19763386 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACTAGCAGCGGGATCAGCAGCATGTAGAGAGG
251 AGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATC-GCAGCATGTAGAGGGG
* * *
19763451 GA-TCGGGCTGATCTCTGGCTTGCGCATTATACCTCTCAGGCTGGCCTCTCTGGCTA
315 GACT-GGGCTGATCCCAGGCTTGCGCATTATGCCTCTC--GCTGGCCTCT-TGGCTA
*
19763507 GCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTAA
1 GCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATATCTAA
* * * * *
19763571 GCATACAGAGTTCATTCCCAGTCTAAGATCGGTCTAGATCGAGGGCTGCGGCAGTAGGA-TAGA-
65 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGACTAGAG
* * *
19763634 CAGCACA-CAAGAGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
130 CAGCACACCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * *
19763698 GTCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAAGCCCTAGC
195 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * *
19763763 CAGACCGAGGGTTGTGGCAGCAAGACCGGCAGCGGGTTCGACAACATGCAGAGGGGGACTGGGCT
260 CGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCG-CAGCATGTAGAGGGGGACTGGGCT
* *
19763828 GATCCCCGGCTTGCGCATTATGCATCTC-C-GG----TTGGCTA
324 GATCCCAGGCTTGCGCATTATGCCTCTCGCTGGCCTCTTGGCTA
* * * * * * * *
19763866 ----AGCACCCGCACACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAG
1 GCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAG
* * * *
19763927 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGACCAGCAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGACTAG-AG
* ** *
19763992 CAGGATAGGCAGCACGCAGGAGGGACCGGGCC-AGTCCCCGACTTATGCATTCTGCCTCTTCGAC
130 C-----A-GCA-CAC-CAGGAGGGACCGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGAC
* * * *
19764056 CGG-TGAGCACTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
186 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
19764120 AGCCCTAGCTGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGTAGCATGTAGAGGGG
251 AGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATC-GCAGCATGTAGAGGGG
* * **
19764185 GACTGGGCTGATCCCAGGCTTGCGCATTATGCCTCTCCGATCGGCCTCTTCGACCG
315 GACTGGGCTGATCCCAGGCTTGCGCATTATGCCTCT-CGCT-GGCCTCTT-GGCTA
* * * * * * *
19764241 GATGAGCTCCTACACGCTCATTTTGTGGGTTGACTTAGGCATACAAAGCTCATCCCAAATCTAAG
1 GCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAG
* * * *
19764306 CATACGGAGTTCATTCCCAGTCTAAGATCGGTCCGGA-CTGAGGGTTGCGGCAGTAGGA-TCG-G
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCAGTAGGACTAGAG
* ** * * * *
19764368 TAGCA-TGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTGAGC
130 CAGCACACCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
19764432 GCCCGCACG-TCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
195 GCCCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* *
19764496 CTGGACCGAGGGTTGTGGCAGC-GGACCGACAGC
259 CCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
19764529 ACGTAGAGGG
Statistics
Matches: 858, Mismatches: 129, Indels: 84
0.80 0.12 0.08
Matches are distributed among these distances:
354 3 0.00
355 98 0.11
356 2 0.00
357 1 0.00
358 1 0.00
359 6 0.01
360 1 0.00
363 1 0.00
364 5 0.01
365 3 0.00
366 145 0.17
367 97 0.11
368 263 0.31
369 3 0.00
370 5 0.01
371 4 0.00
372 4 0.00
374 2 0.00
375 2 0.00
376 2 0.00
377 3 0.00
378 2 0.00
379 99 0.12
381 103 0.12
382 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (367 bp):
GCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGACTAGAGC
AGCACACCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
GGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGCAGCATGTAGAGGGGGACTGGGCTGA
TCCCAGGCTTGCGCATTATGCCTCTCGCTGGCCTCTTGGCTA
Found at i:19763927 original size:26 final size:26
Alignment explanation
Indices: 19763897--19763952 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
19763887 TGGGTTGGCT
19763897 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
19763923 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19763949 TAAG
1 TAAG
19763953 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19764326 original size:734 final size:735
Alignment explanation
Indices: 19763054--19764517 Score: 1969
Period size: 734 Copynumber: 2.0 Consensus size: 735
19763044 CCGAGGGTTG
* * * * *
19763054 CGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCGGATTCCCGACTTGCGTATTCTACCTCT
1 CGGCAGCAGGATCGACAACACGCAGGGGGGACCGGGCGGATCCCCGACTTGCGCATTATACATCT
* * * * * * * *
19763119 CCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCCTATGGAGTTCATTCCAT
66 CCGGCCGGCTAAGCACCCGCACACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCAT
* **
19763184 GTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGTAGTAGGA
131 GTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGGA
* * * * *
19763249 CCAGTAGCAGGATCAGCAACACGCAGGGAGGGATCGGGTCGATCCTCTGCTTGCGCATTCTACCT
196 CCAGCAGCAGGATCAGCAACACGCAGGGAGGGACCGGGCCGATCCTCCGCTTACGCATTCTACCT
* * *
19763314 CTCCGGCCGGTTGAGCACCCGCACGCTTGTTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCC
261 CTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGGGGGTTGGCTTAGGCATACGAAGTTCATTCC
*
19763379 ATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACTAGCAGCGGGATCAGCAGCATGT
326 ATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAGCAGCATGT
* * * * *
19763444 AGAGAGGGATCGGGCTGATCTCTGGCTTGCGCATTATACCTCTCAGGCTGGCCTCTCTGGCTAGC
391 AGAGAGGGATCGGGCTGATCCCAGGCTTGCGCATTATACCTCTCAGGCTGGCCTCTCTGACCAGA
* * * *
19763509 TGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCA
456 TGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGCTCATCCCAAATCTAAGCA
*
19763574 TACAGAGTTCATTCCCAGTCTAAGATCGGTCTAGA-TCGAGGGCTGCGGCAGTAGGATAGACAGC
521 TACAGAGTTCATTCCCAGTCTAAGATCGGTCCAGACT-GAGGGCTGCGGCAGTAGGATAGACAGC
* * * * *
19763638 ACACAAGAGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGTCCG
585 ACACAAGAGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCCCG
* *
19763703 CACG-CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAAGCCCTAGCCAGA
650 CACGTC-CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
19763767 CCGAGGGTTGTGGCAGCAAGAC
714 CCGAGGGTTGTGGCAGCAAGAC
* * * * * * *
19763789 CGGCAGCGGGTTCGACAACATGCAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCATC
1 CGGCAGCAGGATCGACAACACGCAG-GGGGGACCGGGCGGATCCCCGACTTGCGCATTATACATC
**
19763854 TCCGGTTGGCTAAGCACCCGCACACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCA
65 TCCGGCCGGCTAAGCACCCGCACACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCA
* * *
19763919 TGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGG
130 TGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGG
* *
19763984 ACCAGCAGCAGGAT-AGGCAGCACGCA-GGAGGGACCGGGCC-AGTCC-CCGACTTATGCATTCT
195 ACCAGCAGCAGGATCA-GCAACACGCAGGGAGGGACCGGGCCGA-TCCTCCG-CTTACGCATTCT
* * * *
19764045 GCCTCTTCGACCGG-TGAGCACTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCA
257 ACCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGGGGGTTGGCTTAGGCATACGAAGTTCA
* * * *
19764109 TTCCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGTAG
322 TTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAGCAG
* * * *
19764173 CATGTAGAGGGGGA-CTGGGCTGATCCCAGGCTTGCGCATTATGCCTCTC-CGATCGGCCTCT-T
386 CATGTAGAGAGGGATC-GGGCTGATCCCAGGCTTGCGCATTATACCTCTCAGGCT-GGCCTCTCT
* * * *
19764235 CGACCGGATGAGCTCCTACACGCTCATTTTGTGGGTTGACTTAGGCATACAAAGCTCATCCCAAA
449 -GACCAGATGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGCTCATCCCAAA
* * *
19764300 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCGGACTGAGGGTTGCGGCAGTAGGAT
513 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGTCCAGACTGAGGGCTGCGGCAGTAGGAT
* ** ** * * *
19764365 CGGTAGCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTGA
578 AGACAGCACACAAGAGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTGA
* * *
19764430 GCGCCCGCACGTCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
643 GCGCCCGCACGTCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
**
19764495 GCTGGACCGAGGGTTGTGGCAGC
708 GCCAGACCGAGGGTTGTGGCAGC
19764518 GGACCGACAG
Statistics
Matches: 631, Mismatches: 88, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
733 5 0.01
734 399 0.63
735 60 0.10
736 167 0.26
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (735 bp):
CGGCAGCAGGATCGACAACACGCAGGGGGGACCGGGCGGATCCCCGACTTGCGCATTATACATCT
CCGGCCGGCTAAGCACCCGCACACTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCAT
GTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGGA
CCAGCAGCAGGATCAGCAACACGCAGGGAGGGACCGGGCCGATCCTCCGCTTACGCATTCTACCT
CTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGGGGGTTGGCTTAGGCATACGAAGTTCATTCC
ATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAGCAGCATGT
AGAGAGGGATCGGGCTGATCCCAGGCTTGCGCATTATACCTCTCAGGCTGGCCTCTCTGACCAGA
TGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGCTCATCCCAAATCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCGGTCCAGACTGAGGGCTGCGGCAGTAGGATAGACAGCA
CACAAGAGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCCCGC
ACGTCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
GAGGGTTGTGGCAGCAAGAC
Found at i:19764596 original size:158 final size:157
Alignment explanation
Indices: 19764305--19764806 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 157
19764295 CCAAATCTAA
** *** * * * **
19764305 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGTCCGGACTGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGAC
* * * * ** *
19764369 AGCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGC
65 AGCACGTAGGGGGGACCGGGCCGATACCC-GCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGC
*
19764434 CCGCACGTCCGTTTTATGGGTTGGCTTAG
129 CCGCACGTCCGTTTCATGGGTTGGCTTAG
* * * *
19764463 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAG-CGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGACA
**
19764527 GCACGTAGAGGGGGACCGAACCGAT-CCCTGTCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCG
66 GCACGTAG-GGGGGACCGGGCCGATACCC-G-CTTGCGCATTATGCCTCTTCGGTCGGCTGAGCG
* * * * *
19764591 GCCGCACGTTCGTTTCGTGGGTTGACTTAT
128 CCCGCACGTCCGTTTCATGGGTTGGCTTAG
* ** ** * *
19764621 GCATACAGAGTTCATTCC-TAGTCTAAGATCCAACCGGATGGAGGGTTGTGGCAGTAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGAC
* * *
19764685 AGCACGTAGGGGGGACCGGGCTGATACCCGACTTGCGCATTCTGCCTC-TCTAGTCGGCTGAGCG
65 AGCACGTAGGGGGGACCGGGCCGATACCCG-CTTGCGCATTATGCCTCTTC-GGTCGGCTGAGCG
* *
19764749 CCCGCACG-CTCATTTCATAGGTTGGCTTAG
128 CCCGCACGTC-CGTTTCATGGGTTGGCTTAG
19764779 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
19764807 ATACAGAGTT
Statistics
Matches: 281, Mismatches: 54, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 22 0.08
158 240 0.85
159 19 0.07
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGACA
GCACGTAGGGGGGACCGGGCCGATACCCGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCC
GCACGTCCGTTTCATGGGTTGGCTTAG
Found at i:19764829 original size:26 final size:26
Alignment explanation
Indices: 19764779--19764831 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19764769 GTTGGCTTAG
* *
19764779 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
19764805 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
19764831 G
1 G
19764832 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:19765845 original size:159 final size:160
Alignment explanation
Indices: 19765653--19766029 Score: 413
Period size: 159 Copynumber: 2.4 Consensus size: 160
19765643 TGGTTGAGCA
* * *
19765653 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA-GGAAATTCATTCCATGTCTAAGCCCCAG-
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCACCAGA
* ** * * * * *
19765716 CCAGACCGAGGGTTGTGGCAGTGGGATCGGCAGCACAC-AGAGGGGGACCGGGCCGATCCCTGGG
65 CCAGACCGAGGGTTATGGCAGCAGGATCGACAGCACACAAG-GGGGGACCAGGCCAAACCCTGGC
** *
19765780 TTGCGCATTATGCCTCTCCGGCCAGCTCAGCG
129 TTGCGCATTATGCCTCTCCAACCAGCTCAACG
* * *
19765812 CCCGGACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
** * * * *
19765875 CTGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAAGGGGGGATCAGGCTAAACCCTGGCT
65 CCAGACCGAGGGTTATGGCAGCAGGATCGACAGCACACAAGGGGGGACCAGGCCAAACCCTGGCT
* * * *
19765940 TGCGCATTCTGCCTCTCCAACCGGTTGAACG
130 TGCGCATTATGCCTCTCCAACCAGCTCAACG
* * **
19765971 CCTGTACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
19766030 TGCAGAGTTC
Statistics
Matches: 180, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
158 6 0.03
159 166 0.92
160 8 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACCGAGGGTTATGGCAGCAGGATCGACAGCACACAAGGGGGGACCAGGCCAAACCCTGGCTT
GCGCATTATGCCTCTCCAACCAGCTCAACG
Found at i:19766030 original size:26 final size:26
Alignment explanation
Indices: 19766001--19766053 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19765991 GTTGGCTTAG
*
19766001 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
19766027 GCATGCAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
19766053 G
1 G
19766054 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19766403 original size:26 final size:26
Alignment explanation
Indices: 19766367--19766419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19766357 GTTGACTTAG
19766367 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
19766393 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19766419 G
1 G
19766420 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19766693 original size:159 final size:157
Alignment explanation
Indices: 19766448--19767516 Score: 755
Period size: 159 Copynumber: 6.8 Consensus size: 157
19766438 TGCGGCACGA
* * * *
19766448 GGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGG
1 GGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCACTCCGGCC-G
* * * * *
19766513 CGGAGCACTCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT-CGGGGGTTCATTCCATGTCTAAG
65 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCATGTCTAAG
19766577 CCTCAGCCAGACCGAGGGTTGTGGTAGCG
129 CCTCAGCCAGACCGAGGGTTGTGGTAGCG
* * * *
19766606 GGATCGACAGCACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCACTTCGGCCA
1 GGATCGACAGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCACTCCGGCC-
* * * * * *
19766671 GCTCAGTGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCA-GTCTAA
64 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAA
* * * * * **
19766735 G-ATCAGACCGGATCGAGGGTTGCGGCAGTA
128 GCCTCAG-CCAGACCGAGGGTTGTGGTAGCG
* * * * * * * *
19766765 GGATCGATAGCACGTAGGGTGGGATCGGGTCGGTCCTCGGCTTGTGCATTCTGCCTCTCCGGCCG
1 GGATCGACAGCACGTAGGG-GGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCACTCCGGCCG
*
19766830 ACTGAGCGCCCTCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 -CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
19766895 CCCCAGCCTGACCAAGTGTTGTGGCT-GCG
129 CCTCAGCCAGACCGAGGGTTGTGG-TAGCG
* * * * * * * * *
19766924 GGATCGATAGCTCGTAAAGGGGGACCGGGCCCATCCTCGACTTGCGCGTTATGCCACTTCGGCTG
1 GGATCGACAGCACGT-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCACTCCGGC-C
* * * * ** * *
19766989 GCTCAGCTCCTGCACGCTCGTTTAATGGGTTGACTTAGGCATACGCAGTTCATTCCCA-GTCTAA
64 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
* * * * * ** * *
19767053 G-ATCGGATCAAACCGACGGTTGCAGCAGCA
128 GCCTCAG-CCAGACCGAGGGTTGTGGTAGCG
* * * * ** * *
19767083 AGATCGACAGCATGTA-GGGGGACCGAGCCGATCCCCAGCTTGTTCATTATGCCTCTCTGGCCGA
1 GGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCACTCCGGCCG-
* * * * * *
19767147 CTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG
65 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
* * * * *
19767211 -ATCGGACCGGATCGAAGG-T-T-GT----
129 CCTCAG-CCAGACCGAGGGTTGTGGTAGCG
* * * * * *
19767233 -G---G-CAGCATGTAGGGTGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCAG
1 GGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCACTCCGGCC-G
* * * * * *
19767293 TTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * *
19767358 CCCAGTCGGACCGAGGGTTGTGGCAACG
130 CTCAGCCAGACCGAGGGTTGTGGTAGCG
* * * ** * * * *
19767386 GGACCGGCAGTACACAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCG
1 GGATCGACAGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCACTCCG-GCC
* * *
19767451 GC-GCAGCGCCCGAACGCTCA-TTCTGTGGGTCGACTTAGGCATACGGAGTTCATTCCCA-GTCT
64 GCTG-AGCGCCCGCACGCTCATTTC-GTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
19767513 AAGC
126 AAGC
19767517 ATACGGAGTT
Statistics
Matches: 712, Mismatches: 162, Indels: 73
0.75 0.17 0.08
Matches are distributed among these distances:
145 12 0.02
146 100 0.14
147 4 0.01
148 1 0.00
149 2 0.00
154 2 0.00
156 2 0.00
157 106 0.15
158 40 0.06
159 424 0.60
160 19 0.03
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
GGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCACTCCGGCCGC
TGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
TCAGCCAGACCGAGGGTTGTGGTAGCG
Found at i:19766970 original size:318 final size:314
Alignment explanation
Indices: 19766393--19767198 Score: 990
Period size: 318 Copynumber: 2.5 Consensus size: 314
19766383 CCCAGTCTAA
* *
19766393 GCATACGGAGTTTATTCCCAGTCTAAGATTGGACCGGATCGAGGTTGCGGCACGAGGATCGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGTTGCGGCA-GAGGATCGACAG
* * * *
19766458 CACGTAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCGGAGCACTC
65 CACGTAGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGC-CCC
* * * *
19766523 GCACGCCCATTTCGTGGGTTGGCTTAGGCAT-CGGGGGTTCATTCCATGTCTAAGCCTCAGCCAG
129 TCACGCTCATTTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * *
19766587 ACCGAGGGTTGTGGTAGCGGGATCGACAGCACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGCG
193 ACCAAGGGTTGTGGTAGCGGGATCGACAGCACGCAAAGGGGGACCGAGCCAATCCCCGACTTGCG
**
19766652 CATTATGCCACTTCGGCCAGCTCAG-TGCCCGAACACTCATTTCGTGGGTTGACTTAG
258 CATTATGCCACTTCGGCCAGCTCAGCT-CCCGAACACTCATTTAATGGGTTGACTTAG
* * *
19766709 GCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA-GGTTGCGGCAG-AGGATCGACA
* * * *
19766774 GCACGTAGGGTGGGATCGGGTCGGTCCTCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGC
64 GCACGTAGGG-GGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGC-C
*
19766839 CCTCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCT
127 CCTCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * * *
19766904 GACCAAGTGTTGTGGCT-GCGGGATCGATAGCTCGTAAAGGGGGACCGGGCCCATCCTCGACTTG
192 GACCAAGGGTTGTGG-TAGCGGGATCGACAGCACGCAAAGGGGGACCGAGCCAATCCCCGACTTG
* ** * * * *
19766968 CGCGTTATGCCACTTCGGCTGGCTCAGCTCCTGCACGCTCGTTTAATGGGTTGACTTAG
256 CGCATTATGCCACTTCGGCCAGCTCAGCTCCCGAACACTCATTTAATGGGTTGACTTAG
* * ** * * *
19767027 GCATACGCAGTTCATTCCCAGTCTAAGATCGGATCAAACCGACGGTTGCAGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA-GGTTGCGGCAG-AGGATCGACA
* * * * * * *
19767092 GCATGTA-GGGGGACCGAGCCGATCCCCAGCTTGTTCATTATGCCTCTCTGGCCGACTGAGCACC
64 GCACGTAGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCCCC
* * *
19767156 TGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
129 T-CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
19767199 CCCCAGTCTA
Statistics
Matches: 419, Mismatches: 64, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
315 3 0.01
316 120 0.29
317 31 0.07
318 262 0.63
319 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGTTGCGGCAGAGGATCGACAGC
ACGTAGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCCCCTC
ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
AAGGGTTGTGGTAGCGGGATCGACAGCACGCAAAGGGGGACCGAGCCAATCCCCGACTTGCGCAT
TATGCCACTTCGGCCAGCTCAGCTCCCGAACACTCATTTAATGGGTTGACTTAG
Found at i:19767377 original size:146 final size:145
Alignment explanation
Indices: 19767090--19767382 Score: 340
Period size: 146 Copynumber: 2.0 Consensus size: 145
19767080 GCAAGATCGA
** *
19767090 CAGCATGTAGGGGGACCGAGCCGATCCCCAGCTTGTTCATTATGCCTCTCTGGCCGACTGAGCAC
1 CAGCATGTAGGGGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGCCGACTGAGCAC
* * * * *
19767155 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCGGACCG
66 CCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGACCAGACCG
*
19767220 GATCGAAGGTTGTGG
131 GACCGAAGGTTGTGG
* ** * *
19767235 CAGCATGTAGGGTGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCC-AGTTGAGC
1 CAGCATGTAGGG-GGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGCCGA-CTGAGC
* * * * *
19767299 ACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCCCCAG
64 ACCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG-ACCAG
* *
19767363 -TCGGACCGAGGGTTGTGG
127 ACCGGACCGAAGGTTGTGG
19767381 CA
1 CA
19767383 ACGGGACCGG
Statistics
Matches: 123, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
145 16 0.13
146 105 0.85
147 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (145 bp):
CAGCATGTAGGGGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGCCGACTGAGCAC
CCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGACCAGACCG
GACCGAAGGTTGTGG
Found at i:19767525 original size:26 final size:26
Alignment explanation
Indices: 19767489--19767567 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
19767479 GTCGACTTAG
19767489 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19767515 GCATACGGAGTTCA-ACCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
19767541 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19767567 G
1 G
19767568 ATCGGACTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.06
26 41 0.87
27 3 0.06
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19775161 original size:158 final size:158
Alignment explanation
Indices: 19774868--19776000 Score: 1026
Period size: 158 Copynumber: 7.2 Consensus size: 158
19774858 CTCAGTCTAA
* * * * * * * * *
19774868 GCATACGAAGTTCATTCCCAGTCCATGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * ** * *
19774933 GCACGCAG-GGGGGACTGGGACGAACCTCGACTTGCGCATTCTGCCTCTCCGATCGAATAAGTGC
65 GCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
* * *
19774997 CCGCACGCCCGTTCCGTGAGTTGGCTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * ** *
19775026 GCATAGGGAGTTCATTCCATGTCTAAGCCCAG-CCGAACCGAGGGTTGTGGCAGC-GGGCCCAGC
1 GCATACGGAGTTCATTCCA-GTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA-C
* * * * *
19775089 AGCACGCAGAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGTTCAGCG
64 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCG
* * * *
19775154 CCTGCACGCTCATTTCATGGGTTGACTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * *
19775184 GCATACGGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * * *
19775249 GCATGCA-TGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGC
65 GCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
* *
19775313 CCGGACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * * * **
19775342 GCATAGGGAGTTCATTCCATGTTTAAGCCCAG-TCGGACCGAGGGTTGTCGCAGCGGGA-CAGGT
1 GCATACGGAGTTCATTCCA-GTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATC-GAC
* * * * * *
19775405 AGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTTCGACCGGCTCAGCA
64 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCG
** * * * *
19775470 CTTGCACACTCATTTGGTGGGTTGACTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * *
19775500 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTAGTAGCAAGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
19775565 GCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCCCTCCGGTCGACTGAGCAC
65 GCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
* *
19775629 CCGAACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
* * ** * * *
19775658 GCATAGGGAGTTCATTCCATGTCTAAGCCCA-ATGGGATCGAGGGTTGTGGCAGCGGGA-CCAGC
1 GCATACGGAGTTCATTCCA-GTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA-C
* * * *
19775721 AGCACGCAGAAGGGGACCGGGCCGAT-CCTGACTTGCGTATTATGCCTCTCCGATCGGCTCAACG
64 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCG
* * *
19775785 CCTGCATGCTCGTTTCGTGGGTTGACTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * *
19775815 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * * *
19775880 GCACGGAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCGTTCTGCCTCTCTGATTGGCTGAGCGC
65 GCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
* * ** * *
19775945 TCGTACGTTCATTTCGTGGGTTGGCTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
* *
19775974 GCATACGGACTTCATTTCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
19776001 CATACAGAGT
Statistics
Matches: 768, Mismatches: 187, Indels: 39
0.77 0.19 0.04
Matches are distributed among these distances:
156 7 0.01
157 174 0.23
158 444 0.58
159 138 0.18
160 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCC
CGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:19775447 original size:316 final size:315
Alignment explanation
Indices: 19774868--19776001 Score: 1489
Period size: 316 Copynumber: 3.6 Consensus size: 315
19774858 CTCAGTCTAA
* * * * * * *
19774868 GCATACGAAGTTCATTCCCAGTCCATGATCGGACCGGACCGAGGGTTG-CGACAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAG-CAGCAGGATCGAC
* * * * * * * *
19774932 AGCACGCAGGGGGGACTGGGACGAACCTCGACTTGCGCATTCTGCCTCTCCGATCGAATAAGTGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
* * * * *
19774997 CCGCACGCCCGTTCCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGA
130 CCGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGG
* * *
19775062 ACCGAGGGTTGTGGCAGCGGGCCCAGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGACTTGCG
195 ACCGAGGGTTGTGGCAGCGGG-ACAGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTGCG
* *
19775127 CATTATGCCTCTTCGACCGGTTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAG
259 CATTATGCCTCTTCGACCGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
* * *
19775184 GCATACGGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCAGGATCGACA
* * * * * * *
19775249 GCATGCATGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
* *
19775314 CGGACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCAGTCGGA
131 CGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGA
* * *
19775379 CCGAGGGTTGTCGCAGCGGGACAGGTAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTACGC
196 CCGAGGGTTGTGGCAGCGGGACA-GCAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTGCGC
* * * *
19775444 ATTATGCCTCTTCGACCGGCTCAGCACTTGCACACTCATTTGGTGGGTTGACTTAG
260 ATTATGCCTCTTCGACCGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
* * *
19775500 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTAGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCAGGATCGACA
* * * * *
19775565 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCCCTCCGGTCGACTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
* *
19775630 CGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAATGGGA
131 CGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGA
* * * *
19775695 TCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAAGGGGACCGGGCCGATCCT-GACTTGCGT
196 CCGAGGGTTGTGGCAGCGGGA-CAGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTGCGC
* * * * *
19775759 ATTATGCCTCTCCGATCGGCTCAACGCCTGCATGCTCGTTTCGTGGGTTGACTTAG
260 ATTATGCCTCTTCGACCGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
* * *
19775815 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCAGGATCGACA
* * * * * *
19775880 GCACGGAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCGTTCTGCCTCTCTGATTGGCTGAGCGC
66 GCACGCA-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
* * ** * * * *
19775945 TCGTACGTTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTTCATGTCTAAGC
130 CCGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
19776002 ATACAGAGTT
Statistics
Matches: 718, Mismatches: 96, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
315 123 0.17
316 592 0.82
317 3 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
CGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGA
CCGAGGGTTGTGGCAGCGGGACAGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTGCGCA
TTATGCCTCTTCGACCGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:19776360 original size:815 final size:815
Alignment explanation
Indices: 19775184--19776803 Score: 2190
Period size: 815 Copynumber: 2.0 Consensus size: 815
19775174 GTTGACTTAG
* * *
19775184 GCATACGGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCACAGTCCAAGATCGGACCAGACCGAGGGTTGGAGCAGCAGGATCGACA
* * ** * ** *
19775249 GCATGCATGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCC
66 GCACGCAGGGGGGACCAGGCCGAACCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGCC
* * *
19775314 CGGACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCAGTCGGA
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
* * * *
19775379 CCGAGGGTTGTCGCAGCGGGACAGGTAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTACGC
196 CCGAGCGTTGTCGCAGCGGGACAGGCAACACGCAGAGGGGGACCGGGCTGATCCCCGACTTACGC
* ** *
19775444 ATTATGCCTCTTCGACCGGCTCAGCACTTGCACACTCATTTGGTGGGTTGACTTAGGCATACGGA
261 ATTATGCCTCTTCGACCGGCTCAGCACCTGCACACTCATTTCATGGGTTGACTTAGGCATACAGA
* * *
19775509 GTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTAGTAGCAAGATCGACAGCACGCAGG
326 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCAAGATCAACAGCACGCAGG
* * **
19775574 GGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCCCTCCGGTCGACTGAGCACCCGAACGCCC
391 GGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCCCTCCGACCGACTGAGCACCCGAACGCCC
** *
19775639 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAATGGGATCGAGGGTT
456 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAACCGGACCGAGGGTT
** * * *
19775704 GTGGCAGCGGGACCAGCAGCACGCAGAAGGGGACCGGGCCGAT-CCTGACTTGCGTATTATGCCT
521 GTGGCAGCAAGACCAGCAGCACGCAGAAGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCT
* * *
19775768 CTCCGATCGGCTCAACGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
586 CTCCGACCAGCTCAACGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
19775833 CAGTCTAAGATCAGACCGGACCGAAGGTTGTGGTAGCAGGATCGACAGCACGGAGGGGGGGACCG
651 CAGTCTAAGATCAGACCGGACCGAAGGTTGTAGCAGCAAGATCAACAACACGCA--GGGGGACCG
* * ** * * ** * * * *
19775898 GGTCGATCCCCGGCTTGCGCGTTCTGCCTCTCTGATTGGCTGAGCGCTCGTACGTTCATTTCGTG
714 AGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGCCTGAGCACTCGCACGCTCATTTCGTG
19775963 GGTTGGCTTAGGCATACGGACTTCATTTCATGTCTAA
779 GGTTGGCTTAGGCATACGGACTTCATTTCATGTCTAA
* * * * * *
19776000 GCATACAGAGTTCATTCCCAGTCCATGATCGGATCGGACCGAGGGTTGCGA-CAGTAGGATCGAT
1 GCATACAGAGTTCATTCACAGTCCAAGATCGGACCAGACCGAGGGTTG-GAGCAGCAGGATCGAC
** * *
19776064 AGCACGCAGGGGGGACCAGGTTGAACCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGC
65 AGCACGCAGGGGGGACCAGGCCGAACCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGC
19776129 CCGCA-GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGG
* * * *
19776193 ACTGAGCGTTGTGGCAGCGGGACCA-GCAACACGCAGAGGGGGACCAGG-TCGATCCCCGACTTG
195 ACCGAGCGTTGTCGCAGCGGGA-CAGGCAACACGCAGAGGGGGACCGGGCT-GATCCCCGACTTA
** * * *
19776256 CGCATTATGCCTC-TCTGGTCGGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATA
258 CGCATTATGCCTCTTC-GACCGGCTCAGCACCTGCACACTCATTTCATGGGTTGACTTAGGCATA
** * * * *
19776320 CAGAGTTCATTCGTAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCAACAGCACG
322 CAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCAAGATCAACAGCACG
* * * * * * * * *
19776385 CAGGGGGGATCGGGCCGATCCCCGGTTTGCTCATTCTACCTCTCCGACCGGCTGAGCGCCTGCAC
387 CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCCCTCCGACCGACTGAGCACCCGAAC
*
19776450 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAG
452 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAACCGGACCGAG
* * * * *
19776515 GGTTGTGGCAGCAAGACCAGTAGCACGTAGAGGGGGATCAGGCCGATCCCCGACTTGTGCATTAT
517 GGTTGTGGCAGCAAGACCAGCAGCACGCAGAAGGGGACCAGGCCGATCCCCGACTTGCGCATTAT
* ** *
19776580 GCCTCTCCGGCCAGCTCAGTGCCTGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCA
582 GCCTCTCCGACCAGCTCAACGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
19776645 TTCCCAGTCTAAGATCAGACTGGACCGAAGGTTGTAGCAGCAAGATCAACAACACGCAGGGGGAT
647 TTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGTAGCAGCAAGATCAACAACACGCAGGGGGAC
*
19776710 CGAGCCGATCCCCAACTTGCGTATTCTGCCTCTCCGACCGCCTGAGCACTCGCACGCTCATTTCG
712 CGAGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGCCTGAGCACTCGCACGCTCATTTCG
*
19776775 TGGGTTGGCTTAGGCATACGGAGTTCATT
777 TGGGTTGGCTTAGGCATACGGACTTCATT
19776804 CCCAGTCTAA
Statistics
Matches: 693, Mismatches: 106, Indels: 12
0.85 0.13 0.01
Matches are distributed among these distances:
814 89 0.13
815 368 0.53
816 235 0.34
817 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (815 bp):
GCATACAGAGTTCATTCACAGTCCAAGATCGGACCAGACCGAGGGTTGGAGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCCGAACCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
CCGAGCGTTGTCGCAGCGGGACAGGCAACACGCAGAGGGGGACCGGGCTGATCCCCGACTTACGC
ATTATGCCTCTTCGACCGGCTCAGCACCTGCACACTCATTTCATGGGTTGACTTAGGCATACAGA
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCAGCAAGATCAACAGCACGCAGG
GGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCCCTCCGACCGACTGAGCACCCGAACGCCC
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAACCGGACCGAGGGTT
GTGGCAGCAAGACCAGCAGCACGCAGAAGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCT
CTCCGACCAGCTCAACGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCGGACCGAAGGTTGTAGCAGCAAGATCAACAACACGCAGGGGGACCGAG
CCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGCCTGAGCACTCGCACGCTCATTTCGTGGG
TTGGCTTAGGCATACGGACTTCATTTCATGTCTAA
Found at i:19776392 original size:158 final size:158
Alignment explanation
Indices: 19776000--19776834 Score: 867
Period size: 158 Copynumber: 5.3 Consensus size: 158
19775990 TCATGTCTAA
* * * * * * * * * *
19776000 GCATACAGAGTTCATTCCCAGTCCATGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAACA
* ** * * * * *
19776065 GCACGCAGGGGGGACCAGGTTGAACCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCC
66 GCACGCAGGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCC
* *
19776130 CGCA-GCCCGTTTCGTGGGTTGGCTTAG
131 TGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
19776157 GCATAGGGAGTTCATT-CCATGTCTAAGCCCAG-CCGGACTGAGCGTTGTGGCAGCGGGACCAGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAAC
* * * * * **
19776220 AACACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGGTCGGCTCAGCG
65 AGCACGCAG-GGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCG
* *
19776285 CCTGCACGCTCGTTTCATGGGTTGACTTAG
129 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
19776315 GCATACAGAGTTCATTCGTAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAACA
* ** * * *
19776380 GCACGCAGGGGGGATCGGGCCGATCCCCGGTTTGCTCATTCTACCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCC
*
19776445 TGCACGCCCGTTTCGTGGGTTGGCTTAG
131 TGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * **
19776473 GCATAGGGAGTTCATT-CCATGTCTAAGCCCAG-CCGGACCGAGGGTTGTGGCAGCAAGACCAGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAAC
* * * * * *
19776536 AGCACGTAGAGGGGGATCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGCCAGCTCAGTG
65 AGCACGCAG-GGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCG
* *
19776601 CCTGCACGCTCGTTTCGTTGGTTGACTTAG
129 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
19776631 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTGTAGCAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAACA
* * * * * *
19776696 ACACGCA-GGGGGATC-GAGCCGATCCCCAACTTGCGTATTCTGCCTCTCCGACCGCCTGAGC-A
66 GCACGCAGGGGGGATCAG-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGC
*
19776758 CTCGCACGCTCATTTCGTGGGTTGGCTTAG
130 CT-GCACGCTCGTTTCGTGGGTTGGCTTAG
* *
19776788 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
19776835 ACGGTAGCAG
Statistics
Matches: 550, Mismatches: 117, Indels: 22
0.80 0.17 0.03
Matches are distributed among these distances:
156 34 0.06
157 216 0.39
158 232 0.42
159 68 0.12
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAACA
GCACGCAGGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCC
TGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19776579 original size:316 final size:316
Alignment explanation
Indices: 19776000--19776814 Score: 1084
Period size: 316 Copynumber: 2.6 Consensus size: 316
19775990 TCATGTCTAA
* * * * * * * *
19776000 GCATACAGAGTTCATTCCCAGTCCATGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAACA
* * ** * * *
19776065 GCACGCAGGGGGGACCAGGTTGAACCCCGGCTTG-TGCATTCTGCCTCTCCGACCGGCTAAGTGC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCT-CATTCTGCCTCTCCGACCGGCTGAGCGC
*
19776129 CCGCA-GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGG
130 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGG
* ** *
19776193 ACTGAGCGTTGTGGCAGCGGGACCAGCAACACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCG
195 ACCGAGCGTTGTGGCAGCAAGACCAGCAACACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCG
* * *
19776258 CATTATGCCTCTCTGGTCGGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAG
260 CATTATGCCTCTCCGGCCAGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAG
** *
19776315 GCATACAGAGTTCATTCGTAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCAACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAACA
* *
19776380 GCACGCAGGGGGGATCGGGCCGATCCCCGGTTTGCTCATTCTACCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCGACCGGCTGAGCGCC
19776445 TGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
131 TGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
* * * * * *
19776510 CCGAGGGTTGTGGCAGCAAGACCAGTAGCACGTAGAGGGGGATCAGGCCGATCCCCGACTTGTGC
196 CCGAGCGTTGTGGCAGCAAGACCAGCAACACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGC
* * *
19776575 ATTATGCCTCTCCGGCCAGCTCAGTGCCTGCACGCTCGTTTCGTTGGTTGACTTAG
261 ATTATGCCTCTCCGGCCAGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
19776631 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTGTAGCAGCAAGATCAACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAACA
* * ** * *
19776696 ACACGCA-GGGGGATCGAGCCGATCCCCAACTTGCGT-ATTCTGCCTCTCCGACCGCCTGAGC-A
66 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGC-TCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
19776758 CTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
130 CT-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
19776815 ATCGGACCAG
Statistics
Matches: 438, Mismatches: 57, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
314 2 0.00
315 204 0.47
316 232 0.53
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (316 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAACA
GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCGACCGGCTGAGCGCC
TGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
CCGAGCGTTGTGGCAGCAAGACCAGCAACACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGC
ATTATGCCTCTCCGGCCAGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:19776997 original size:26 final size:26
Alignment explanation
Indices: 19776961--19777011 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19776951 TGACTTAGGT
*
19776961 ATACGGAGTTCA-TCCCTAGTCTAAGC
1 ATACGAAGTTCATTCCC-AGTCTAAGC
19776987 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19777012 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:19777877 original size:26 final size:26
Alignment explanation
Indices: 19777840--19777892 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19777830 GTTAACTTAG
*
19777840 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* * *
19777866 GCATACAGAGTTTATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
19777892 G
1 G
19777893 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:19778316 original size:158 final size:159
Alignment explanation
Indices: 19778028--19778337 Score: 381
Period size: 158 Copynumber: 2.0 Consensus size: 159
19778018 AAGCCCCAAT
* * * * *
19778028 CGGACCGAGGGTTGTGGCAGTGGGACCAACAGCACGCAGAGGGGAATCGGGCCGATCCTCGACTT
1 CGGACCGAGGGTTGTGGCAGTAGCACCAACAACACACAGAGGGGAATCGGGCCGATCCCCGACTT
* * * *
19778093 ACGCATTATGCCTCTCCGGTCGGTTCAGCACCCGCACGCTCATATTGTGGGTTGACTTAGCCATA
66 ACGCATTATACCTCTCCGATCAGTTCAGCACCCGCACGCTCATATTATGGGTTGACTTAGCCATA
19778158 CGGAGTTCATTCCAAGTCTAAGATCAGAC
131 CGGAGTTCATTCCAAGTCTAAGATCAGAC
* * * * * *
19778187 CGGACCGAGGGTTGTGGCAGTAGCATCGACAACACACAG-GGGGGATTGGGTCGATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGTAGCACCAACAACACACAGAGGGGAATCGGGCCGATCCCCGACTT
* * * * * * * *
19778251 GCGCATTCTACCTCTCCGATCAGTTGAGCGCCTGCACGCTCGT-TTCATGGGTTGGCTTAGGCAT
66 ACGCATTATACCTCTCCGATCAGTTCAGCACCCGCACGCTCATATT-ATGGGTTGACTTAGCCAT
*
19778315 ACGGAGTTCATTCCATGTCTAAG
130 ACGGAGTTCATTCCAAGTCTAAG
19778338 CATACAGAGT
Statistics
Matches: 126, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
157 2 0.02
158 91 0.72
159 33 0.26
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CGGACCGAGGGTTGTGGCAGTAGCACCAACAACACACAGAGGGGAATCGGGCCGATCCCCGACTT
ACGCATTATACCTCTCCGATCAGTTCAGCACCCGCACGCTCATATTATGGGTTGACTTAGCCATA
CGGAGTTCATTCCAAGTCTAAGATCAGAC
Found at i:19778361 original size:26 final size:26
Alignment explanation
Indices: 19778311--19778369 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
19778301 GTTGGCTTAG
* *
19778311 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
19778337 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
19778363 -CAT-CAGA
1 GCATACAGA
19778370 CCGGACCGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 20 0.67
27 3 0.10
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:19778428 original size:851 final size:859
Alignment explanation
Indices: 19777153--19778873 Score: 2169
Period size: 851 Copynumber: 2.0 Consensus size: 859
19777143 GCATAGGGAG
* * *** *
19777153 TTCATTCCATGTTTAAGCCCCAATCAAATCGAGGGTTGTGGCAGCGGGACTGGCAGCATGCAGAG
1 TTCATTCCATGTCTAAGCCCCAATCAAACCGAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAG
* * * * *
19777218 GGGGATCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGGCCAGCTCAACGCCCGTACACAC
66 GGGAATCGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCCAGCTCAACACCCGCACACAC
* * *
19777283 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGT
131 ATATTGTGGGTTGACTTAGCCATACGGAGTTCATTCCAAGTCTAAGATCAAACCGGACCGAGGGT
* * * * * * *
19777348 TGCGGCAGTAGGATTGATAGCACGCAGGGGGATCGGGATGATCCCTGGCTTGCGCATTCTGCCTC
196 TGCGGCAGTAGCATCGACAACACACAGGGGGATCGGGATGATCCCCGGCTTGCGCATTCTACCTC
* ** *
19777413 TCCGTTTGGCTGAGCGCCTGCACGTTCGTTTCATGGGTTAGCCTAGGCATACGAAGTTCATTCCA
261 TCCGATCAGCTGAGCGCCTGCACGCTCGTTTCATGGGTTAGCCTAGGCATACGAAGTTCATTCCA
* * * * * * *
19777478 TGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCGGACCGGATCAAGGGTTGTGACAGTAGG
326 TGTCTAAGCATACAGAGTTCATTCCCAATCTAACATCAGACCGGACCAAGGGTTGCGACAGCAAG
* * *
19777543 ACCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCGGGTCGACCCCCGGCTTACTCATTCTACC
391 ACCAGCAGCAGCATCGACAGCACGCAGAGGGGGACCGGGTCGACCCCCGGCTTACGCATTCTACC
* * *
19777608 TCTCCGATC-GGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATT
456 TCTCCGACCTGCTT-AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATT
* ** *
19777672 CCATGTCTAAGCCCCAATC-GAACCGATTGTTGTTGCAGCAAGACCGACAGCTG-GATCGG-T-A
520 CCATGTCTAAGCCCCAACCTG-ACCGAGGGTTGTGGCAGCAAGACCGACAGC-GAGATCGGATGA
* * * * *
19777733 -G-C-AC-GCAGAGGGGGACCGGGTTGATCCCCGGCTTTCATATTATGCCTCTT-TGATCGACCA
583 CGACAACAGCAAAGGGGGACCAGGTTGATCCCCGGCTTGCATATTATGCCT-TTCCGATAGACCA
* * * * * *
19777793 CTCCGGTCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAAAGTTCATCCC
647 CTCCGATCGACTGAGCACCCACACGCTCGTTTCATGGGATAACTTAGGCATACAAAGTTCATCCC
* * ** * *
19777858 CAGTCTAAGCATACAGAGTTTATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAG
712 CAGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAG
* ** * * * **
19777923 GATTGGTAGCACG-AGAGGGATCGGGCCGATCCCTGGCTTGCGCA-TCTACCTCT-TCGATTGGC
777 GATCGACAGCACGAAGAGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCT-GATCAGC
* *
19777985 TAAGCGCCCGCACGCCCGT
841 TAAGCCCCCGCACGCCAGT
** *
19778004 TTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAGTGGGACCAACAGCACGCAGAG
1 TTCATTCCATGTCTAAGCCCCAATCAAACCGAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAG
* * * * * *
19778069 GGGAATCGGGCCGAT-CCTCGACTTACGCATTATGCCTCTCCGGTCGGTTCAGCACCCGCACGCT
66 GGGAATCGGGCCGATCCCT-GACTTACGCATTATGCCTCTCCGGCCAGCTCAACACCCGCACACA
*
19778133 CATATTGTGGGTTGACTTAGCCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGG
130 CATATTGTGGGTTGACTTAGCCATACGGAGTTCATTCCAAGTCTAAGATCAAACCGGACCGAGGG
* *
19778198 TTGTGGCAGTAGCATCGACAACACACAGGGGGGATTGGG-TCGATCCCCGGCTTGCGCATTCTAC
195 TTGCGGCAGTAGCATCGACAACACACA-GGGGGATCGGGAT-GATCCCCGGCTTGCGCATTCTAC
* * * *
19778262 CTCTCCGATCAGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
258 CTCTCCGATCAGCTGAGCGCCTGCACGCTCGTTTCATGGGTTAGCCTAGGCATACGAAGTTCATT
* *
19778327 CCATGTCTAAGCATACAGAGTTCATTCCCAATCTAACATCAGACCGGACCGAGGGTTGCGGCAGC
323 CCATGTCTAAGCATACAGAGTTCATTCCCAATCTAACATCAGACCGGACCAAGGGTTGCGACAGC
* * *
19778392 AAGACCAGCAGCAGCATCGATAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCT
388 AAGACCAGCAGCAGCATCGACAGCACGCAGAGGGGGACCGGGTCGACCCCCGGCTTACGCATTCT
* * * * * *
19778456 GCCTCTTCGACCTGCTTAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCTTACGGAGTTCA
453 ACCTCTCCGACCTGCTTAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCA
* * * * *
19778521 TTCCATGTCTAAGCCCCAGCCTGACCGAGGGTTGTGGCAGTAGGATCGGCAGCGAGATCGGCAAT
518 TTCCATGTCTAAGCCCCAACCTGACCGAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGG--AT
* *
19778586 GGGATCGACAACATGCAAAGGGGGACCAGGTTGATCCCCGGCTTGCGTATTATGCCTTTCCGGTA
581 --GA-CGACAACA-GCAAAGGGGGACCAGGTTGATCCCCGGCTTGCATATTATGCCTTTCCGATA
* * * * * *
19778651 GGCCTCTCCGATCGGCTGAGCACCCACACGCTTGTTTCATGGGATGACTTAGGCATACAGAGTTC
642 GACCACTCCGATCGACTGAGCACCCACACGCTCGTTTCATGGGATAACTTAGGCATACAAAGTTC
19778716 ATCCCCAGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGT
707 ATCCCCAGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGT
* * * * * *
19778781 AGCCGGATCGACAGCATGAAGGGGGACCATGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGAT
772 AGCAGGATCGACAGCACGAAGAGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGAT
19778846 CAGCTAAGCCCCCGCACGCCAGT
837 CAGCTAAGCCCCCGCACGCCAGT
19778869 TTCAT
1 TTCAT
19778874 GGGTTGGCTT
Statistics
Matches: 733, Mismatches: 115, Indels: 30
0.83 0.13 0.03
Matches are distributed among these distances:
850 4 0.01
851 319 0.44
852 175 0.24
854 1 0.00
857 1 0.00
859 1 0.00
860 1 0.00
861 2 0.00
862 2 0.00
863 166 0.23
864 25 0.03
865 35 0.05
866 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (859 bp):
TTCATTCCATGTCTAAGCCCCAATCAAACCGAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAG
GGGAATCGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCCAGCTCAACACCCGCACACAC
ATATTGTGGGTTGACTTAGCCATACGGAGTTCATTCCAAGTCTAAGATCAAACCGGACCGAGGGT
TGCGGCAGTAGCATCGACAACACACAGGGGGATCGGGATGATCCCCGGCTTGCGCATTCTACCTC
TCCGATCAGCTGAGCGCCTGCACGCTCGTTTCATGGGTTAGCCTAGGCATACGAAGTTCATTCCA
TGTCTAAGCATACAGAGTTCATTCCCAATCTAACATCAGACCGGACCAAGGGTTGCGACAGCAAG
ACCAGCAGCAGCATCGACAGCACGCAGAGGGGGACCGGGTCGACCCCCGGCTTACGCATTCTACC
TCTCCGACCTGCTTAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTC
CATGTCTAAGCCCCAACCTGACCGAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGGATGACGA
CAACAGCAAAGGGGGACCAGGTTGATCCCCGGCTTGCATATTATGCCTTTCCGATAGACCACTCC
GATCGACTGAGCACCCACACGCTCGTTTCATGGGATAACTTAGGCATACAAAGTTCATCCCCAGT
CTAAGCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATC
GACAGCACGAAGAGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGATCAGCTAAGC
CCCCGCACGCCAGT
Found at i:19778733 original size:26 final size:26
Alignment explanation
Indices: 19778703--19778755 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19778693 GATGACTTAG
* *
19778703 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
*
19778729 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
19778755 G
1 G
19778756 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:19779036 original size:159 final size:159
Alignment explanation
Indices: 19778867--19779231 Score: 405
Period size: 158 Copynumber: 2.3 Consensus size: 159
19778857 CCGCACGCCA
* * * *
19778867 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGATCGAGGG
1 GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGATCAGATCGAAGG
*** * *
19778931 TTGTGGCAGTGGGACCGACAGCACACAGAGGGGGATCGGGCCGATCCTCGGCTTGCACATTATGC
66 TTGTGGCAACAGGACCGACAGCACACAG-GGGGGAGCGGGCCAATCCTCGGCTTGCACATTATGC
* *
19778996 CTCT-TCGGCTGGCTCAGCGCTCGGATGCTC
130 CTCTCT-GGCCGGCTCAGCGCCCGGATGCTC
* * * *** *
19779026 GTTTCGTGGGTTGACTTATGTATATGGAGTTCATTCCCA-GTCTAAG-ATTGGATCGGATCGAAG
1 GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGCACCAGATCAGATCGAAG
* * ** * *** *
19779089 GTTGTGGGAACAGGATCGACAGCACGTAGGGGGGAGCTGGCCAATCCTCGGCTTGTGTATTCTGC
65 GTTGTGGCAACAGGACCGACAGCACACAGGGGGGAGCGGGCCAATCCTCGGCTTGCACATTATGC
* *
19779154 CTCTCTGGCCGGCTGAGCGCCCGTATGCTC
130 CTCTCTGGCCGGCTCAGCGCCCGGATGCTC
*
19779184 GTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
19779232 TACGAAGCTC
Statistics
Matches: 168, Mismatches: 33, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 92 0.55
159 70 0.42
160 3 0.02
ACGTcount: A:0.18, C:0.23, G:0.32, T:0.27
Consensus pattern (159 bp):
GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGATCAGATCGAAGG
TTGTGGCAACAGGACCGACAGCACACAGGGGGGAGCGGGCCAATCCTCGGCTTGCACATTATGCC
TCTCTGGCCGGCTCAGCGCCCGGATGCTC
Found at i:19779209 original size:158 final size:157
Alignment explanation
Indices: 19778785--19779230 Score: 425
Period size: 159 Copynumber: 2.8 Consensus size: 157
19778775 TGCGGTAGCC
* * * ** *
19778785 GGATCGACAGCATGAAGGGGGACCAT-GCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGATCAG
1 GGATCGACAGCACGAGGGGGGACC-TGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGCCGG
* * * *
19778849 CTAAGCCCCCGCACGC-CAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
65 CTAAGCGCCCGCATGCTC-GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
* ***
19778913 CCCCAGTCAGATCGAGGGTTGTGGCAGTG
129 CCCCAGTCAGATCGAAGGTTGTGGCAACA
* * * * ** * *
19778942 GGACCGACAGCACACAGAGGGGGATCGGGCCGATCCTCGGCTTGCACATTATGCCTCT-TCGGCT
1 GGATCGACAGCAC-GAG-GGGGGACCTGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCT-GGCC
* * * * * *
19779006 GGCTCAGCGCTCGGATGCTCGTTTCGTGGGTTGACTTATGTATATGGAGTTCATTCCCA-GTCTA
63 GGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTA
**** * *
19779070 AG-ATTGGATCGGATCGAAGGTTGTGGGAACA
127 AGCCCCAG-TCAGATCGAAGGTTGTGGCAACA
* * *
19779101 GGATCGACAGCACGTAGGGGGGAGCTGGCCAATCCTCGGCTTGTGTATTCTGCCTCTCTGGCCGG
1 GGATCGACAGCACG-AGGGGGGACCTGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGCCGG
* * *
19779166 CTGAGCGCCCGTATGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
65 CTAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
19779231 ATACGAAGCT
Statistics
Matches: 227, Mismatches: 51, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
157 14 0.06
158 94 0.41
159 115 0.51
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.26
Consensus pattern (157 bp):
GGATCGACAGCACGAGGGGGGACCTGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGCCGGC
TAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCC
CCAGTCAGATCGAAGGTTGTGGCAACA
Found at i:19779341 original size:11 final size:11
Alignment explanation
Indices: 19779325--19779357 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
19779315 CCCGGGGCAC
19779325 CATCGCCAGG-G
1 CATCGCC-GGAG
19779336 CATCGCCGGAG
1 CATCGCCGGAG
19779347 CATCGCCGGAG
1 CATCGCCGGAG
19779358 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 2 0.10
11 19 0.90
ACGTcount: A:0.18, C:0.36, G:0.36, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:19779981 original size:27 final size:26
Alignment explanation
Indices: 19779932--19779985 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 26
19779922 GTTGACTTAG
19779932 GCATACGAAGTTCATCTCCAGTCTAA
1 GCATACGAAGTTCATCTCCAGTCTAA
19779958 GCATACGAAAGTTCAT-TCCTAGTCTAA
1 GCATACG-AAGTTCATCTCC-AGTCTAA
19779985 G
1 G
19779986 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCTCCAGTCTAA
Found at i:19780318 original size:26 final size:26
Alignment explanation
Indices: 19780288--19780337 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19780278 TTGACATACC
*
19780288 CATACGGAGTTCATCCCCAATCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
* *
19780314 CATACAGAGTTCATTCCCAGTCTA
1 CATACAGAGTTCATCCCCAATCTA
19780338 GGATCAGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAG
Found at i:19780698 original size:159 final size:158
Alignment explanation
Indices: 19780320--19780707 Score: 397
Period size: 159 Copynumber: 2.4 Consensus size: 158
19780310 TAAGCATACA
* * * * *
19780320 GAGTTCATTCCCAGTCTAGGATCAGACCGGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
* * * *
19780385 GGGGGGACCGGGCCGATCCCCAACTTGCGCATTTTGCCTCTCCGATCGACTGAGCGTCCGCATGC
66 GGGGGGACCGGGCCGATCCCCAACTTGCGCATTATGCCTCTCCGACCGACTCAGCGTCCGCACGC
* *
19780450 CCGTTTCGTGGGTTGGCTTAGGCATAGG
131 CCATTTCGTGGGTTGACTTAGGCATAGG
** * * ** * *
19780478 GAGTTCATT-CCATGTCTAAGCCCTAG-TCAGACTGAGGGTTGTGGCAGTGGGACCGGTAGCACG
1 GAGTTCATTCCCA-GTCTAAGATC-AGATCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACG
*** * * * * * *
19780541 TAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCGTCTTCGGCCGGCTCAGTG-CCTGT
64 TAG-GGGGGACCGGGCCGATCCCCAACTTGCGCATTATGCCTCTCCGACCGACTCAGCGTCC-GC
* * *
19780605 ACGCTCATTTCGTGGGTTGACTTATGCATATG
127 ACGCCCATTTCGTGGGTTGACTTAGGCATAGG
* * *
19780637 GAGTTCATTCCCAGTCTAAGATCGGATCAGA-TCGAGGGTTGCGGTAGCAGCATCGACAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCAGATCAGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGT
19780701 AGGGGGG
65 AGGGGGG
19780708 GATCAGGCCG
Statistics
Matches: 181, Mismatches: 42, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.02
158 55 0.30
159 120 0.66
160 3 0.02
ACGTcount: A:0.18, C:0.25, G:0.33, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
GGGGGGACCGGGCCGATCCCCAACTTGCGCATTATGCCTCTCCGACCGACTCAGCGTCCGCACGC
CCATTTCGTGGGTTGACTTAGGCATAGG
Found at i:19780825 original size:26 final size:26
Alignment explanation
Indices: 19780789--19780841 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19780779 GTTGGCTTGG
19780789 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
*
19780815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
19780841 G
1 G
19780842 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:19781035 original size:26 final size:25
Alignment explanation
Indices: 19780998--19781049 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
19780988 GTTGACTTAG
19780998 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATT-CCAGTCTAA
* *
19781024 GCATAC-GAAGTTTATTCTAGTCTAA
1 GCATACAG-AGTTCATTCCAGTCTAA
19781049 G
1 G
19781050 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:19781993 original size:711 final size:707
Alignment explanation
Indices: 19780237--19782077 Score: 1977
Period size: 710 Copynumber: 2.6 Consensus size: 707
19780227 ACGCATTATT
* * * * **
19780237 CCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGTGTTGACATACCCATACGGAGTTCAT
1 CCTCTCCGATTGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * **
19780302 CCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAGGATCAGACCGGACTGAGGGTTACGGTAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAAGGTTGCGACAG
* * * * *
19780367 CAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCAACTTGCGCATTTTGCCTCTCCGATC
130 CAGGATCGACAGCACGCAGGGGGGACCGAGCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACC
* *
19780432 GACTGAGCGTCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
195 G-CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * * * **
19780497 GCCCTAGTCAGACTGAGGGTTGTGGCAGTGGGACCGGTAGCACGTAGAGGGGGACCGGGCCGATC
259 GCCCCAGTCAGACCGAGGGTTGTGGCAG-CGGACCGATAGCACGCAGAGGGGGACTGGGTTGATC
* * * * * * * *
19780562 CCTGGCTTGCGCATTATGCGTCTTCGGCCGGCTCAGTGCCTGTACGCTCATTTCGTGGGTTGACT
323 CCTGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTAACT
* ** * * * **
19780627 TATGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGTAGCAGCATCG
388 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGCATCG
* * * * * *
19780692 ACAGCACGTAGGGGGGGATCAGGCCGATTCTCGGTGTGCTCATTCTGCCTCTCCGATCGGCTGAG
453 ACAGCACGCAGGGGGGGATCAGGCCGATCCCCGGTGTGC-CATTCTACCTCTCCGACCGGCTAAG
* * *
19780757 CACCTGTACGCTCGTTTTGGAGGTTGGCTTGGGCATACCGAGTTCATTCCATGTCTAAGCATACG
517 CACCTGCACGCTCGTTTTGGAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACG
* *
19780822 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGATTACGGCCATAGGACCAGCACCAGGAT
582 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGATTACGACCACAGGACCAGCACCAGGAT
* * * * * * * *
19780887 CGGTAGCACGTAGGGGGGATCAGGTCGATCCTCGGCTTGCACATTCTGCCTCGCCAGTTGG
647 CGGTAGCACGTAGGAGGGATCAGGCCAATCCCCAGCTTACACATTCTGCCTCACCAGCTGG
* * * * * * *
19780948 CCTCTCCGATCGGCTGAAC-ATCCGCGCGGTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
1 CCTCTCCGATTGGCTGAGCGCT-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * * * * *
19781012 TTCCCAGTCTAAGCATACGAAGTTTATT-CTAGTCTAAGATCGGACTGGACCAAGGGTTGCAACA
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAA-GGTTGCGACA
* * * * *
19781076 GCAGGATCGACAGCACACAGGGGGGACCGAG-TCGATCCCCAACTTGCACTTTCTACCTCTCCGG
129 GCAGGATCGACAGCACGCAGGGGGGACCGAGCT-GATCCCCAACTTGCGCATTCTGCCTCTCCGA
* * * * *
19781140 CTAGCTGAGCGCCTGCACACCCGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCT
193 C-CGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * *
19781205 AAGCCCCAGTCAGATCGAGGGTTGTGGCAGCGGATCCGACAGCATGCAGAGGGGGA-TCGGGTTG
257 AAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGA-CCGATAGCACGCAGAGGGGGACT-GGGTTG
* * * ** *
19781269 ATCGCTAGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGAATGCTTGTTTCGTTGGTTA
320 ATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTA
* * * *
19781334 ACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGA-CTGAGGGTTACGACAGTAGG
385 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTACGACAGCAGC
** * *
19781398 ATCGACAGCACGCA-GGGGGGATGGGGCCGATCCCCGACTTGTG-CATTCTACCTCTTCGACCGG
449 ATCGACAGCACGCAGGGGGGGATCAGGCCGATCCCCG--GTGTGCCATTCTACCTCTCCGACCGG
**
19781461 CTAAGTGGCC-GCACGCTCGTTTCAT-G-GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
512 CTAAG-CACCTGCACGCTCGTTT--TGGAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
** * * * * ** * *
19781523 AGTGTATGGAGTTCATTCCCATTCTATGATTGGA-TCGGACTGAGGATTGCGACCGCAGGACCAG
574 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCAAGGATTACGACCACAGGACCAG
* * * *
19781587 CAGCAGGATCGGTAGCACGTAAGGAGGTA-CTGGGCCAATCCCCAGCTTACGCATTCTGCCTCAC
638 CACCAGGATCGGTAGCACGT-AGGAGGGATC-AGGCCAATCCCCAGCTTACACATTCTGCCTCAC
*
19781651 CGGCTGG
701 CAGCTGG
19781658 CCTCTCCGATTGGCTGAGCGCTCGCACGCTCGTTT-AGTGGGTTGACTTAGGCATACGGCA-TTC
1 CCTCTCCGATTGGCTGAGCGCTCGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACGG-AGTTC
* * * *
19781721 ATCCCCAGTCTAAGCATAGGGAGTTCATTCCCGGTCTAACATCAAACCGGATCGAAGGTTGCGAC
64 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAAGGTTGCGAC
* * * * * * *
19781786 AGCAGGATCAACAGCACGCAGGGGTGATCGAGCTGATGCCTAGCTTTCGCATTCTGCCTCTCCGA
128 AGCAGGATCGACAGCACGCAGGGGGGACCGAGCTGATCCCCAACTTGCGCATTCTGCCTCTCCGA
* *
19781851 CCGGTCGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCT
193 CCGCT-GAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * *
19781916 AAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGACTGATAGCACGCAGAGGGGGACTGGGTTGA
257 AAGCCCCAGTCAGACCGAGGGTTGTGGCAGCG-GACCGATAGCACGCAGAGGGGGACTGGGTTGA
* * * * * * * * * *
19781981 TCCCCGGCTTGCGCATTCTACCTCTCCGACCAACTGAGTGCCC-ACACGTTCGTTTTGTGGGTTG
321 TCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGA-ACGCTCATTTCGTGGGTTA
* * *
19782045 GCTTAGGCATGCGGAGTTCATT-CCATGTCTAAG
385 ACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
19782078 CATACAGAGT
Statistics
Matches: 920, Mismatches: 184, Indels: 52
0.80 0.16 0.04
Matches are distributed among these distances:
708 1 0.00
709 160 0.17
710 414 0.45
711 338 0.37
712 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (707 bp):
CCTCTCCGATTGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAAGGTTGCGACAGC
AGGATCGACAGCACGCAGGGGGGACCGAGCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACCG
CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGTCAGACCGAGGGTTGTGGCAGCGGACCGATAGCACGCAGAGGGGGACTGGGTTGATCCCT
GGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTAACTTAG
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGCATCGACA
GCACGCAGGGGGGGATCAGGCCGATCCCCGGTGTGCCATTCTACCTCTCCGACCGGCTAAGCACC
TGCACGCTCGTTTTGGAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACTGGACCAAGGATTACGACCACAGGACCAGCACCAGGATCGGT
AGCACGTAGGAGGGATCAGGCCAATCCCCAGCTTACACATTCTGCCTCACCAGCTGG
Found at i:19783052 original size:159 final size:157
Alignment explanation
Indices: 19782758--19783294 Score: 541
Period size: 159 Copynumber: 3.4 Consensus size: 157
19782748 CTAAGCAAAT
* * * *
19782758 GGAGTTCATTCCCAGTTTAAGAT-CAGACCGGACCTAGGCTTGTGGCAGCAGGATCGACA--ACA
1 GGAGTTCATT-CCAGTCTAAG-TCCAG-CTGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACA
* * * *
19782820 C-GCAGGGGGATCGGGCCGATCCCCGGCTTGTGCACTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
63 CAG-AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGC
* * *
19782884 ACGCCCATTTCGTGGGTTGGCTTAGCCATAG
127 ACGCTCATTTCGTGGGTTGGCTTAGGCATAC
** * * * *
19782915 GGAGTTTGTTCCACGTCTAAGTCCTAGCTGGACCGAGGGTTGTGGCTGCGGGACCGACAGCACAT
1 GGAGTTCATTCCA-GTCTAAGTCC-AGCTGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
* * * *
19782980 AGAGGGGGATCGAGCCGATCCCCAGCTTGCGTATTATGCCTCTCCGG-CTGGCTCAGCACCCGCA
64 AGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCACCCGCA
* *
19783044 TGCTCATTTCGTGGGTTGACTTAGGCATAC
128 CGCTCATTTCGTGGGTTGGCTTAGGCATAC
* * * * *
19783074 GGAGTTCATTCTCAGTCTAAGAT-CAGACTGAACTGAGGGTTATGGCAGCAGAATCGATAGCACA
1 GGAGTTCATTC-CAGTCTAAG-TCCAG-CTGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACA
* * * * * *
19783138 CAGGGGGGGACCGGGCCGGTCCCTAGCTTGCGCATTCTACCTCTCCGGTCGGCTGA-AAGCCCGC
63 CAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA-CCCGC
* *
19783202 ACGCTCGTTCCGTGGGTTGGCTTAGGCATAC
127 ACGCTCATTTCGTGGGTTGGCTTAGGCATAC
** *
19783233 AAAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
1 GGAGTTCATTCCA-GTCTAAG-TCCAGCT-GGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
19783295 GGATCGACAG
Statistics
Matches: 308, Mismatches: 57, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.01
157 41 0.13
158 9 0.03
159 246 0.80
160 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GGAGTTCATTCCAGTCTAAGTCCAGCTGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAG
AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGC
TCATTTCGTGGGTTGGCTTAGGCATAC
Found at i:19783295 original size:12 final size:12
Alignment explanation
Indices: 19783278--19783305 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
19783268 AGGGTTGTGG
19783278 CAGCAGGATCGA
1 CAGCAGGATCGA
19783290 CAGCAGGATCGA
1 CAGCAGGATCGA
19783302 CAGC
1 CAGC
19783306 TCGCAGAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.32, T:0.07
Consensus pattern (12 bp):
CAGCAGGATCGA
Found at i:19783709 original size:26 final size:26
Alignment explanation
Indices: 19783680--19783731 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19783670 AGGGTTGCGA
19783680 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
*
19783706 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
19783732 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:19784502 original size:342 final size:344
Alignment explanation
Indices: 19783871--19784601 Score: 1085
Period size: 342 Copynumber: 2.1 Consensus size: 344
19783861 CGCATGCTTG
*
19783871 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
* *
19783936 TCTAAGATCGAACCGGACTGAGGGTTGCAGCAGCAAGATCGGTAGCACGCAGGGGGGACCAAGCC
66 TCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAAGATCGGTAGCACGCAGGGGGGACCAAGCC
* * * * * *
19784001 GATCCTCGGCTTGCGCATTCTGCCTCTCTGACTGGCTGAGTGCCCGCATGCCCATTTCGTGTGTT
131 AATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACATGCCCATTTCATGTGTT
* * * *
19784066 GGCTTAGGCATAGGGAGTTCATTTCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGCG
196 GGCTTAGGCATAGGGAGTTCATTCCACGTATAAACCCCAGCCAGACCGAGGGTTGTGGCAACGCG
* **
19784131 ACTGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCT-GCCTCTCCGGCCAG
261 ACTGACAGCACGTAGAGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTAG-CTCTCCAACCAG
* * *
19784195 TTGAGC-GCCTGCACGTTCA
325 CTGAGCTGCCCGCACGCTCA
* * * * *
19784214 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAAGCTTATAGAGTTCATT-CCAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
*
19784278 TCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGGGGGGACCAA-CT
66 TCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAAGATCGGTAGCACGCAGGGGGGACCAAGC-
*
19784342 CAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACATGCCTATTTCATGTGT
130 CAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACATGCCCATTTCATGTGT
* * * *
19784407 TGGCTTAGGCATAGGGAGTTCATTCCATGTATAAACCCTAGCCAGACCGAGGGTTGTGGCAGCGG
195 TGGCTTAGGCATAGGGAGTTCATTCCACGTATAAACCCCAGCCAGACCGAGGGTTGTGGCAACGC
**
19784472 GACCTG-CAGCACGTAGAGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTAGCTCTCCAACTG
260 GA-CTGACAGCACGTAGAGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTAGCTCTCCAACCA
*
19784536 GCTGAGCTGCCCGCACGCTCG
324 GCTGAGCTGCCCGCACGCTCA
* *
19784557 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAG
19784602 AGTTTGAGCC
Statistics
Matches: 347, Mismatches: 37, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
341 1 0.00
342 237 0.68
343 109 0.31
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (344 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
TCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAAGATCGGTAGCACGCAGGGGGGACCAAGCC
AATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCACATGCCCATTTCATGTGTT
GGCTTAGGCATAGGGAGTTCATTCCACGTATAAACCCCAGCCAGACCGAGGGTTGTGGCAACGCG
ACTGACAGCACGTAGAGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTAGCTCTCCAACCAGC
TGAGCTGCCCGCACGCTCA
Found at i:19785308 original size:26 final size:26
Alignment explanation
Indices: 19785271--19785323 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19785261 GTTGGCTTAG
*
19785271 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
19785297 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
19785323 G
1 G
19785324 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:19785517 original size:26 final size:26
Alignment explanation
Indices: 19785467--19785519 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19785457 GTTGACTTAG
* *
19785467 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
19785493 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
19785519 G
1 G
19785520 ATTGAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:19785848 original size:26 final size:26
Alignment explanation
Indices: 19785812--19785863 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19785802 TTGGCTTAGA
19785812 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
*
19785838 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
19785864 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:19785949 original size:11 final size:11
Alignment explanation
Indices: 19785933--19785965 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
19785923 CCTAGGGCAC
19785933 CATCGTCGGAG
1 CATCGTCGGAG
*
19785944 CATCGTCAGAG
1 CATCGTCGGAG
19785955 CATCGTCGGAG
1 CATCGTCGGAG
19785966 AGCCTATCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:19787544 original size:160 final size:158
Alignment explanation
Indices: 19787291--19787584 Score: 385
Period size: 160 Copynumber: 1.8 Consensus size: 158
19787281 AGGGTTACGA
* * * * * *
19787291 CAGTAGGATCGACAGCACCCAGGGGGGACCGGGTCAATCCTCGACTTGCGCATTCTGCCTCTCCG
1 CAGTAGGACCGACAGCACACAGGGGGGACCGGGCCAATCCCCGACTTACGCATTATGCCTCTCCG
** * * * *
19787356 GTTGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTCGGCTTAGGCATAGGGAGTTCATTCCAATGT
66 ACTGGCTCAGCGCCCGAACGCCCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCAA-GT
19787421 CTAAGCCCCAGTCAGACTGAGGGTTGTGG
130 CTAAGCCCCAGTCAGACTGAGGGTTGTGG
*
19787450 CAGTGGGACCGACAGCACACAGAGGGGG-CTCGGGCCAATCCCC-AGCTTACGCATTATGCCTCT
1 CAGTAGGACCGACAGCACACAG-GGGGGAC-CGGGCCAATCCCCGA-CTTACGCATTATGCCTCT
* * * *
19787513 CTGACTGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
63 CCGACTGGCTCAGCGCCCGAACGCCCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCAA
19787578 GTCTAAG
128 GTCTAAG
19787585 ATCAGATCGG
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
159 28 0.24
160 87 0.76
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
CAGTAGGACCGACAGCACACAGGGGGGACCGGGCCAATCCCCGACTTACGCATTATGCCTCTCCG
ACTGGCTCAGCGCCCGAACGCCCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCAAGTC
TAAGCCCCAGTCAGACTGAGGGTTGTGG
Found at i:19787767 original size:26 final size:26
Alignment explanation
Indices: 19787716--19787768 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19787706 GTTGGCTTAG
*
19787716 GCATACAGAGTTCATTCCACATCTAA
1 GCATACAGAGTTCATTCCACACCTAA
*
19787742 GCATACGGAGTTCATTCC-CAGCCTAA
1 GCATACAGAGTTCATTCCACA-CCTAA
19787768 G
1 G
19787769 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACACCTAA
Found at i:19787960 original size:26 final size:26
Alignment explanation
Indices: 19787924--19787976 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19787914 GTTGACTTAG
19787924 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
19787950 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19787976 G
1 G
19787977 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19788658 original size:26 final size:26
Alignment explanation
Indices: 19788622--19788674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19788612 GTTGGCTTAG
* **
19788622 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19788648 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19788674 G
1 G
19788675 GTCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19789407 original size:26 final size:26
Alignment explanation
Indices: 19789370--19789448 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
19789360 GTTGACTTAG
* *
19789370 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACATAGTTCATTCCCAATCTAA
19789396 GCATACATAGTTCATTCCCAATCTAA
1 GCATACATAGTTCATTCCCAATCTAA
19789422 GCATACATAGTTCATTCCCAATCTAA
1 GCATACATAGTTCATTCCCAATCTAA
19789448 G
1 G
19789449 ATCGGATTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (26 bp):
GCATACATAGTTCATTCCCAATCTAA
Found at i:19789726 original size:159 final size:158
Alignment explanation
Indices: 19789462--19789765 Score: 348
Period size: 159 Copynumber: 1.9 Consensus size: 158
19789452 GGATTGGACT
* * * * * **
19789462 GAGGGTTGTGGCAGTAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATT
1 GAGGGTCGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTGGCACATT
* * * * * *
19789527 CTGCCTCTCCGACTGACTGAGTGCCCGCACGCCTGTTTCATGGGTTTG-CTTAGGT-ATAGGGAG
66 ATGCCTCTCCGACTGACTCAGCGCCCGCACACCTGTTTCATGGG-TTGACTTA-GTCAAACGGAG
19789590 TTCATTC-CATGTCTAAGCCCCAGTCAGACC
129 TTCATTCACA-GTCTAAGCCCCAGTCAGACC
* * * *
19789620 GAGGGTCGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTGGCACAT
1 GAGGGTCGTGGCAGCAGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTGGCACAT
* *
19789685 TATGCCTCTCCGA-TCGGCTCAGCGTCCGCACA-CTCGTTTCATGGGTTGACTTAGTCAAACGGA
65 TATGCCTCTCCGACT-GACTCAGCGCCCGCACACCT-GTTTCATGGGTTGACTTAGTCAAACGGA
19789748 GTTCATTCACAGTCTAAG
128 GTTCATTCACAGTCTAAG
19789766 ATTGGACCGG
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
158 36 0.30
159 83 0.69
160 2 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GAGGGTCGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTGGCACATT
ATGCCTCTCCGACTGACTCAGCGCCCGCACACCTGTTTCATGGGTTGACTTAGTCAAACGGAGTT
CATTCACAGTCTAAGCCCCAGTCAGACC
Found at i:19790618 original size:26 final size:26
Alignment explanation
Indices: 19790584--19790635 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19790574 TTGGCTTAGA
19790584 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
*
19790610 CATATGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
19790636 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:19792065 original size:159 final size:157
Alignment explanation
Indices: 19791676--19792090 Score: 388
Period size: 159 Copynumber: 2.6 Consensus size: 157
19791666 TGATTGAGCA
* * * *
19791676 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGTC
* * ** * * * * * *
19791741 GGATCGAGGGTTGTGGCAGCGGGACCGACAGTACGCAGAGGGGGACCGGGTCGATTCCTGGCTTG
64 GAACCGAGGGTTACGACAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATTCCTGACTTG
* * *
19791806 CGCATTATGCCACTTCAATCGGCTCAGTG
129 CGCATTATGCCACTCCAACCGGCTCAGGG
* * * **
19791835 CCCGTACGCTTGTTTCATGGGTTGACTTATGCATACGGAGTTCATTACCA-GTCTAAGATCA-TA
1 CCCGCACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGT-
* **
19791898 CCAGACCGAGGGTTACGACAGCAGGATTGACAGCACGCA-AGGGGGGACCAGGCCGA-TCCTCGA
63 CGA-ACCGAGGGTTACGACAGCAGGACCGACAGCACGCAGA-GGGGGACCAGGCCGATTCCT-GA
* * ** *
19791961 CTTGCGCATTCTGCCTCTCCTGCCGGCTGAGGG
125 CTTGCGCATTATGCCACTCCAACCGGCTCAGGG
* *
19791994 CCCGCACGCTCGTTTTATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGGTC
1 CCCGCACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA-GTC
** * *
19792059 GAACCGAGGGTTGTGGCAGTAGGACCGACAGC
64 GAACCGAGGGTTACGACAGCAGGACCGACAGC
19792091 GGGATCGGTA
Statistics
Matches: 202, Mismatches: 44, Indels: 20
0.76 0.17 0.08
Matches are distributed among these distances:
157 1 0.00
158 12 0.06
159 182 0.90
160 6 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CCCGCACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGA
ACCGAGGGTTACGACAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATTCCTGACTTGCG
CATTATGCCACTCCAACCGGCTCAGGG
Found at i:19792246 original size:25 final size:26
Alignment explanation
Indices: 19792195--19792246 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19792185 GTTGACATAG
19792195 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
19792221 GCATACGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
19792246 G
1 G
19792247 TTCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:19793829 original size:26 final size:26
Alignment explanation
Indices: 19793793--19793845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19793783 GTTGACTTAG
19793793 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
19793819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
19793845 G
1 G
19793846 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:19794162 original size:343 final size:344
Alignment explanation
Indices: 19793465--19794820 Score: 894
Period size: 354 Copynumber: 4.0 Consensus size: 344
19793455 GTTGACTTAG
* *
19793465 GCATACGGAGCTTATTCCCAGTCTAAGATCGGACCAGACCGAGTGTTGCGACAATAGGATCGATA
1 GCATACGGAGCTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAACAGGATCGATA
* * * **** *
19793530 GCATGCAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTTTCTGGTCGGCTGAGCGCC
66 GCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCAGCTGAGCGCC
* * *
19793595 CACACGCTCATTTGTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCCCCAGCCGGA
131 CACACGCTCATTTGTGGGTTGACTTAGGCATACGGAGATAATTCCATGTCTAAGCCCCAGCCAGA
* *
19793660 CCGAGGGTTATGGTAGCAGGACCGACAGCGGGATCAGCAGCACGCAGAGGGGGACCCAGTTGATC
196 CCGAGGGTTATGGCAGCAGGACCGACAGC--GAT--------CGCAGAGGGGGACCCAGTCGATC
* * * *
19793725 CCCAGTTTACGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGTGTTGACT
251 CCCAGCTTACGCATTATGCCTCTCCGACCGGCTGAGTGCCCGAACGCTCATTTCATGGGTTGACT
19793790 TAGGCATACGGAGTTCATCCCCAATCTAA
316 TAGGCATACGGAGTTCATCCCCAATCTAA
* * * *
19793819 GCATACGGAG-TTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAACAGGATTGGT
1 GCATACGGAGCTT-ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAACAGGATCGAT
* * * * *
19793883 AGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCAGCTGAGTGC
65 AGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCAGCTGAGCGC
* * **
19793948 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATAGGGACTTTAATT-CATGTCTAAGCCCCAGCC
130 CCACACGCTCATTT-GTGGGTTGACTTAGGCATACGGA-GATAATTCCATGTCTAAGCCCCAGCC
* * * * ** *
19794012 AGATCGAGGGTTGTGGCAGCTGGACCGACAGC-AT-GCAGAGGGGGATCGGGTCGATCCCCGGCT
193 AGACCGAGGGTTATGGCAGCAGGACCGACAGCGATCGCAGAGGGGGACCCAGTCGATCCCCAGCT
** * * *
19794075 TGTGCATTATGCCTCTTCGACCGGCTCTA-TGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCA
258 TACGCATTATGCCTCTCCGACCGGCT-GAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCA
* *
19794139 TATGTAGTTCAT------TC---
322 TACGGAGTTCATCCCCAATCTAA
* * * * *
19794153 -C---C--A----A-T--C--T--AAGATCGGATCAGACCGAGTGTTGCGACAGCAGTATTGATA
1 GCATACGGAGCTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAACAGGATCGATA
* * * ** ** *
19794201 GCACGCAGGGGGGACCGGACCGATCCCCGACTTATGCATTCTACCTCTCCGGCC-GACAGAGCGC
66 GCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCAG-CTGAGCGC
** * * * * **** *
19794265 CTGCACGATCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGAT
130 CCACACGCTCATTT-GTGGGTTGACTTAGGCATACGGAGATAATT-CCATGTCTAAGCCCCAG-C
* * * * *** *
19794328 CGGACTGAGGGTTACGGTAGCAGGACCAGTAGCAG-GATCGGCAGCACGTAGGGGGGA-ATGGAC
192 CAGACCGAGGGTTATGGCAGCAGGACC-G-A-CAGCGAT---C-GCA-G-A-GGGGGACCCAG-T
* * * * *** * * *
19794391 CAATCCCCAGCTTGCGCATTCTACCTCTCCGGTTGGCTGAGTGCCCGCATGCTCAATTCATGGGT
246 CGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGCTGAGTGCCCGAACGCTCATTTCATGGGT
* *
19794456 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAA
311 TGACTTAGGCATACGGAGTTCATCCCCAATCTAA
* * * *
19794490 GCATACGGAG-TTCATTCCCGGTCTAAGATCGGTCCAGACCAAGGGTTGCGGCAACAGGATCGAT
1 GCATACGGAGCTT-ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAACAGGATCGAT
* * * * * * * * * * * *
19794554 AGCACGCAA-GGGGATCGAGCCGATTCCTGGCTTACACATTATGCCTCTCCGACCGGTTGAGTGC
65 AGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCAGCTGAGCGC
* * * * * * *
19794618 CCGTACAC-C-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGA
130 CC--ACACGCTCATTT-GTGGGTTGACTTAGGCATACGGAGATAATTCCATGTCTAAGCCCCAGC
* * * * * * *
19794681 CAGACCGAAGGTTGTGGCAGCAGGAACTG-CAGC-A-CGCAGAGGGGGA-TCGGGCTGATCCTC-
192 CAGACCGAGGGTTATGGCAGCAGG-ACCGACAGCGATCGCAGAGGGGGACCCAGTC-GATCCCCA
* *** * * * * * * *
19794741 GACTTACGCATTATGCCTCTTCGGTTGGGTCAGCGCCCGTACGCTCGTTTCGTGGGTTCACTTAG
255 G-CTTACGCATTATGCCTCTCCGACCGGCTGAGTGCCCGAACGCTCATTTCATGGGTTGACTTAG
19794806 GCATACGGAGTTCAT
319 GCATACGGAGTTCAT
19794821 TCCTAGTCTA
Statistics
Matches: 788, Mismatches: 157, Indels: 126
0.74 0.15 0.12
Matches are distributed among these distances:
316 7 0.01
317 148 0.19
318 3 0.00
319 2 0.00
320 5 0.01
321 1 0.00
323 1 0.00
324 1 0.00
325 3 0.00
326 1 0.00
327 4 0.01
328 77 0.10
330 1 0.00
333 1 0.00
334 2 0.00
337 2 0.00
338 1 0.00
341 3 0.00
342 77 0.10
343 89 0.11
344 2 0.00
345 3 0.00
346 1 0.00
347 1 0.00
348 1 0.00
350 5 0.01
352 6 0.01
353 102 0.13
354 165 0.21
355 69 0.09
356 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (344 bp):
GCATACGGAGCTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAACAGGATCGATA
GCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCAGCTGAGCGCC
CACACGCTCATTTGTGGGTTGACTTAGGCATACGGAGATAATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTATGGCAGCAGGACCGACAGCGATCGCAGAGGGGGACCCAGTCGATCCCCAGCTTAC
GCATTATGCCTCTCCGACCGGCTGAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACG
GAGTTCATCCCCAATCTAA
Found at i:19794285 original size:158 final size:157
Alignment explanation
Indices: 19793819--19794328 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 157
19793809 CCCAATCTAA
* *
19793819 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAACAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGGATTGATA
* * * * *
19793884 GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACC-AGCTGAGTGC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGA-CAGAGCG-
19793948 CCGCACGCTCATTTCGTGGGTTGACTTAG
129 CCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * ** * * * * **
19793977 GCATAGGGACTTTAATT--CATGTCTAAG-CCCCAGCCAGATCGAGGGTTGTGGCAGCTGGACCG
1 GCATACGGA-GTTCATTCCCA-GTCTAAGATCGGA-TCAGATCGAGGGTTGCGACAGCAGGATTG
* * * * * * **
19794039 ACAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGGCTCTA
63 ATAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGAC-AGA
* * *
19794104 TGC-CCGAACGCTCGTTTCATGGGTTGACTTAG
126 -GCGCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
19794136 GCATATGTAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGTGTTGCGACAGCAGTATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGGATTGATA
* * * * * *
19794201 GCACGCAGGGGGGACCGGACCGATCCCCGACTTATGCATTCTACCTCTCCGGCCGACAGAGCGCC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACAGAGCGCC
* *
19794266 TGCACGATCATTTCGTGGGTTGGCTTAG
131 -GCACGCTCATTTCGTGGGTTGACTTAG
*
19794294 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
19794329 GGACTGAGGG
Statistics
Matches: 271, Mismatches: 69, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 141 0.52
159 115 0.42
160 5 0.02
161 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGGATTGATA
GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACAGAGCGCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:19794494 original size:26 final size:26
Alignment explanation
Indices: 19794464--19794516 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19794454 GTTGACTTAG
19794464 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
19794490 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19794516 G
1 G
19794517 ATCGGTCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19794853 original size:159 final size:158
Alignment explanation
Indices: 19794490--19794892 Score: 415
Period size: 159 Copynumber: 2.6 Consensus size: 158
19794480 CCCAGTCTAA
* * * * *
19794490 GCATACGGAGTTCATTCCCGGTCTAAGATC-GGTCCAGACCAAGGGTTGCGGCAACAGGATCGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGAT-CAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
19794554 AGCACGCA-A-GGGGATCGAGCCGATTCCTGGCTTACACATTATGCCTCTCCGACCGGTTGAGTG
64 AGCACGCAGAGGGGGATCGGGCTGATTCCTGACTTACACATTATGCCTCTCCGACCGGGTCAGCG
**
19794617 CCCGTACACCCGTTTCGTGGGTTGGCTTAG
129 CCCGTACACCCGTTTCGTGGGTTCACTTAG
* ** * * *
19794647 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGA-CAGACCGAAGGTTGTGGCAGCAGGAACTG-
1 GCATACGGAGTTCATTCCA-GTCTAAGATC-AGATCAGACCGAGGGTTGCGGCAGCAGGATC-GA
* * ***
19794710 CAGCACGCAGAGGGGGATCGGGCTGA-TCCTCGACTTACGCATTATGCCTCTTCGGTTGGGTCAG
63 CAGCACGCAGAGGGGGATCGGGCTGATTCCT-GACTTACACATTATGCCTCTCCGACCGGGTCAG
* *
19794774 CGCCCGTACGCTCGTTTCGTGGGTTCACTTAG
127 CGCCCGTACACCCGTTTCGTGGGTTCACTTAG
* * *
19794806 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* *
19794871 GCACACAG-GAGGGATCGGGCTG
65 GCACGCAGAGGGGGATCGGGCTG
19794893 GTCCCCAGCT
Statistics
Matches: 199, Mismatches: 37, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 53 0.27
158 23 0.12
159 120 0.60
160 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGAGGGGGATCGGGCTGATTCCTGACTTACACATTATGCCTCTCCGACCGGGTCAGCGCC
CGTACACCCGTTTCGTGGGTTCACTTAG
Found at i:19794907 original size:670 final size:670
Alignment explanation
Indices: 19793407--19794991 Score: 1832
Period size: 670 Copynumber: 2.4 Consensus size: 670
19793397 TGGGACTTGT
* * * * * *
19793407 GCATTATGCCTCTCCGACCAGCTCAATGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACG
1 GCATTATGCCTCTTCGACCGGCTCTACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
19793472 GAGCTT-ATTCCCAGTCTAAGATCGGACCAGACCGAGTGTTGCGACAATAGGATCGATAGCATGC
66 GAG-TTCATTCCCAGTCTAAGATCGGATCAGACCGAGTGTTGCGACAGTAGGATCGATAGCA--C
** * * *
19793536 A-AGGGGGACCGGG-TCGATCCCCGGCTTGCGCATTCTACCTTTCTGGTCGGCTGAGCGCCCACA
128 ACAGGGGGACCGGGCT-GATCCCC-GCTTATGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCA
19793599 CGCTCATTT-GTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCCCCAGCCGGACCG
191 CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCCCCAGCCGGACCG
* * ***
19793663 AGGGTTATGGTAGCAGGACCGACAGCGGGATCAGCAGCACGCAGAGGGGGACCCAGTTGATCCCC
256 AGGGTTACGGTAGCAGGACCGACAGCAGGATCAGCAGCACGCAGAGGGGGACCCAGCCAATCCCC
* * * * *
19793728 AGTTTACGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGTGTTGACTTAG
321 AGCTTACGCATTATACCTCTCCGACCGGCTGAGTGCCCGCACGCTCAATTCATGGGTTGACTTAG
* *
19793793 GCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAT
386 GCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * * * * * * *
19793858 CGAGGGTTGCGACAACAGGATTGGTAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCAT
451 CAAGGGTTGCGACAACAGGATCGATAGCACGCAGAGGGGATCGAGCCGATCCCCGGCTTACACAT
* * * *
19793923 TCTGCCTCTCCAACCAGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAGGGACT
516 TATGCCTCTCCAACCAGCTGAGTGCCCGCACACCCATTTCGTGGGTTGACTTAGGCATAGGGACG
* * * * *
19793988 TTAATTCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCTGGACCGACAGCATGCAGAGG
581 TTAATTCATGTCTAAGCCCCAGACAGACCGAAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGG
* **
19794053 GGGATCGGGTCGATCCCCGGCTTGT
646 GGGATCGGGTCGATCCCCGACTTAC
* * *
19794078 GCATTATGCCTCTTCGACCGGCTCTATGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATATG
1 GCATTATGCCTCTTCGACCGGCTCTACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * *
19794143 TAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGTGTTGCGACAGCAGTATTGATAGCACGCA
66 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGTGTTGCGACAGTAGGATCGATAGCACACA
* * * * * * *
19794208 GGGGGGACCGGACCGATCCCCGACTTATGCATTCTACCTCTCCGGCCGACAGAGCGCCTGCACGA
131 -GGGGGACCGGGCTGATCCCCG-CTTATGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCACGC
* **** * *
19794273 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGATCGGACTGA
194 TCATTTCGTGGGTTGGCTTAGGCATACGGAGATCATT-CCATGTCTAAGCCCCAG-CCGGACCGA
* * * ***
19794336 GGGTTACGGTAGCAGGACC-AGTAGCAGGATCGGCAGCACGTAG-GGGGGA-ATGGACCAATCCC
257 GGGTTACGGTAGCAGGACCGA-CAGCAGGATCAGCAGCACGCAGAGGGGGACCCAG-CCAATCCC
* * *** *
19794398 CAGCTTGCGCATTCTACCTCTCCGGTTGGCTGAGTGCCCGCATGCTCAATTCATGGGTTGACTTA
320 CAGCTTACGCATTATACCTCTCCGACCGGCTGAGTGCCCGCACGCTCAATTCATGGGTTGACTTA
* *
19794463 GGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCGGTCTAAGATCGG-TCCAG
385 GGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-CAG
* * *
19794527 ACCAAGGGTTGCGGCAACAGGATCGATAGCACGCA-AGGGGATCGAGCCGATTCCTGGCTTACAC
449 ACCAAGGGTTGCGACAACAGGATCGATAGCACGCAGAGGGGATCGAGCCGATCCCCGGCTTACAC
* * * * * *
19794591 ATTATGCCTCTCCGACCGGTTGAGTGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
514 ATTATGCCTCTCCAACCAGCTGAGTGCCCGCACACCCATTTCGTGGGTTGACTTAGGCATAGGGA
* * *
19794656 -GTTCATTCCATGTCTAAGCCCTAGACAGACCGAAGGTTGTGGCAGCAGGAACTG-CAGCACGCA
579 CGTTAATT-CATGTCTAAGCCCCAGACAGACCGAAGGTTGTGGCAGCAGG-ACCGACAGCACGCA
*
19794719 GAGGGGGATCGGG-CTGATCCTCGACTTAC
642 GAGGGGGATCGGGTC-GATCCCCGACTTAC
*** * * *
19794748 GCATTATGCCTCTTCGGTTGGGTC-AGCGCCCGTACGCTCGTTTCGTGGGTTCACTTAGGCATAC
1 GCATTATGCCTCTTCGACCGGCTCTA-CGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * *
19794812 GGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACAC
65 GGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGTGTTGCGACAGTAGGATCGATAGCACAC
* * * * *
19794877 AGGAGGGATCGGGCTGGTCCCCAGCTTATGCATTCTACCTCTCTGGCCGGTTGAGAGCCCGCATG
130 AGG-GGGACCGGGCTGATCCCC-GCTTATGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCACG
* * ** * *
19794942 CTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTTATTCCATGTCTAAGC
193 CTCATTTCGTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGC
19794992 ATACAAAGTT
Statistics
Matches: 763, Mismatches: 132, Indels: 38
0.82 0.14 0.04
Matches are distributed among these distances:
669 13 0.02
670 345 0.45
671 323 0.42
672 79 0.10
673 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (670 bp):
GCATTATGCCTCTTCGACCGGCTCTACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGTGTTGCGACAGTAGGATCGATAGCACACA
GGGGGACCGGGCTGATCCCCGCTTATGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCACGCTC
ATTTCGTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
TACGGTAGCAGGACCGACAGCAGGATCAGCAGCACGCAGAGGGGGACCCAGCCAATCCCCAGCTT
ACGCATTATACCTCTCCGACCGGCTGAGTGCCCGCACGCTCAATTCATGGGTTGACTTAGGCATA
CGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGG
GTTGCGACAACAGGATCGATAGCACGCAGAGGGGATCGAGCCGATCCCCGGCTTACACATTATGC
CTCTCCAACCAGCTGAGTGCCCGCACACCCATTTCGTGGGTTGACTTAGGCATAGGGACGTTAAT
TCATGTCTAAGCCCCAGACAGACCGAAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGAT
CGGGTCGATCCCCGACTTAC
Found at i:19794963 original size:158 final size:159
Alignment explanation
Indices: 19794627--19794990 Score: 380
Period size: 158 Copynumber: 2.3 Consensus size: 159
19794617 CCCGTACACC
* *
19794627 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGACAGACCGAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGACAGACCGAAGG
* * * * *
19794692 TTGTGGCAGCAGGAACTGCAGCACGCAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTATGC
66 TTGCGGCAGCAGGAACTGCAGCACACAGAGAGGGATCGGGCTGATCCCCGACTTACGCATTATAC
** * *
19794757 CTCTTCGGTTGGGTCAGCGCCCGTACGCT
131 CTCTTCGGCCGGGTCAGAGCCCGCACGCT
** * * * *
19794786 CGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATC-AGATCGGATCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCTAGA-CAGACCGAA
* * * *
19794849 GGTTGCGGCAGTAGGATC-GACAGCACACAG-GAGGGATCGGGCTGGTCCCC-AGCTTATGCATT
64 GGTTGCGGCAGCAGGAACTG-CAGCACACAGAGAGGGATCGGGCTGATCCCCGA-CTTACGCATT
* * * *
19794911 CTACCTC-TCTGGCCGGTTGAGAGCCCGCATGCT
127 ATACCTCTTC-GGCCGGGTCAGAGCCCGCACGCT
* ** *
19794944 CGTTTCATGGGTTGGCTTAGGCATACAAAGTTTATTCCATGTCTAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
19794991 CATACAAAGT
Statistics
Matches: 168, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 91 0.54
159 74 0.44
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGACAGACCGAAGG
TTGCGGCAGCAGGAACTGCAGCACACAGAGAGGGATCGGGCTGATCCCCGACTTACGCATTATAC
CTCTTCGGCCGGGTCAGAGCCCGCACGCT
Found at i:19794993 original size:26 final size:26
Alignment explanation
Indices: 19794964--19795016 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19794954 GTTGGCTTAG
*
19794964 GCATACAAAGTTTATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
*
19794990 GCATACAAAGTTCATTCCCTGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
19795016 G
1 G
19795017 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATGTCTAA
Found at i:19795190 original size:26 final size:26
Alignment explanation
Indices: 19795161--19795213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19795151 GTTGACTTAG
*
19795161 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
19795187 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19795213 G
1 G
19795214 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19795534 original size:26 final size:26
Alignment explanation
Indices: 19795504--19795553 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
19795494 GGCTTACGCA
19795504 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
19795530 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19795554 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:19796414 original size:26 final size:26
Alignment explanation
Indices: 19796362--19796417 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
19796352 TGGGTTGGCT
*
19796362 TAAGCATACGAAGTTCATTCTATGTC
1 TAAGCATACGAAGTTCATTCCATGTC
*
19796388 TAAGCATACGGAGTTCATTCCCA-GTC
1 TAAGCATACGAAGTTCATT-CCATGTC
19796414 TAAG
1 TAAG
19796418 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCATGTC
Found at i:19796781 original size:25 final size:26
Alignment explanation
Indices: 19796746--19796797 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19796736 GTTGACTTAG
19796746 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19796772 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19796797 G
1 G
19796798 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19797416 original size:26 final size:26
Alignment explanation
Indices: 19797386--19797438 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19797376 GTTGACTTAG
*
19797386 GCATATGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
19797412 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19797438 G
1 G
19797439 ATCTAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19798507 original size:26 final size:26
Alignment explanation
Indices: 19798471--19798521 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19798461 TGACCTAGGT
19798471 ATACGGAGTTCA-TCCCTAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
19798497 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19798522 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19798916 original size:159 final size:159
Alignment explanation
Indices: 19798627--19798987 Score: 338
Period size: 159 Copynumber: 2.3 Consensus size: 159
19798617 GAGGCCCCAT
* * ** * ** * *
19798627 ACGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCCAAGCCCCAG-TCGGA
1 ACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTA-GTCTAAG-ATCAGACCAGA
* * * *
19798690 CCGAGGGTTGTGGCAGCGGGATCGATAGCACGTAGAGGGGGATCAGGACGAGCCCCAGCTTTCGC
64 CTGAGGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGGAGATCAGGACGAGCCCCAGCTGTCGC
* *
19798755 ATTATGCCTCACCGGTC-AGCCCAGCGCCCGC
129 ATTATGCCTCACCGATCGA-ACCAGCGCCCGC
** *
19798786 ACGCTTGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCTAGTCTAAGATCAGACCAGAC
1 ACGCCCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCTAGTCTAAGATCAGACCAGAC
* * * ** **
19798850 TGAGGGTTGTGGTAGCAGGATCGATAGCACGTAGTGGGAGATCGGGTTG-GTCCCTGGCCTGT-G
65 TGAGGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGGAGATCAGGACGAG-CCCCAG-CTGTCG
* * * **
19798913 CATTCTGCGTCTCCGATCGAATGAGCGCCCGC
128 CATTATGCCTCACCGATCGAACCAGCGCCCGC
* *
19798945 ATGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC
1 ACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
19798988 ATGTTTAAGC
Statistics
Matches: 161, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
158 5 0.03
159 150 0.93
160 6 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
ACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACT
GAGGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGGAGATCAGGACGAGCCCCAGCTGTCGCAT
TATGCCTCACCGATCGAACCAGCGCCCGC
Found at i:19799022 original size:26 final size:26
Alignment explanation
Indices: 19798970--19799022 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19798960 GTTGGCTTAG
*
19798970 GCATACAGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
19798996 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
19799022 G
1 G
19799023 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:19799374 original size:26 final size:26
Alignment explanation
Indices: 19799338--19799390 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19799328 GTTGACTTAG
* *
19799338 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAATCTAA
*
19799364 GCATATGGAGTTCAGTCCCAATCTAA
1 GCATACGGAGTTCAGTCCCAATCTAA
19799390 G
1 G
19799391 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAATCTAA
Found at i:19800851 original size:157 final size:157
Alignment explanation
Indices: 19800516--19800897 Score: 427
Period size: 157 Copynumber: 2.4 Consensus size: 157
19800506 CCTTTCTGAT
* * * * *
19800516 CAGCTGAGCACTTGCACACTCGTTTCGCGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTA
1 CAGCTAAGCACTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * * * *
19800581 AGCCCCAGTCGGACCGAGGGTTGTGGCACGGGACCAGTAGCACGCAGAGGGGATCGGGCCGATCC
66 AGCACCAGTCGGACAGAGGGTTGTGGCACAGGACCAGTAGCACGCAGAGGGGACCGAGCCAATCC
*
19800646 TCGGCTTGCGCATTATGCCTCTCCAGC
131 TCGGCTTGCACATTATGCCTCTCCAGC
* ** * *
19800673 CAGCTCAGCACCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCT
1 CAGCTAAGCACTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
** * *
19800737 AAG-ATTAGATCGGACAGAGGGTTGTGGTAGCAGGATC-GATAGCACGCAG-GGGGCACCGAGCC
65 AAGCACCAG-TCGGACAGAGGGTTGTGGCA-CAGGACCAG-TAGCACGCAGAGGGG-ACCGAGCC
* *
19800799 AATCC-CTGGCTTGCACATTCTGCCTCTCC-GAT
126 AATCCTC-GGCTTGCACATTATGCCTCTCCAG-C
**
19800831 C-GCTAAGTGCTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CAGCTAAGCACTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
19800895 AGC
66 AGC
19800898 CTACGGAGTT
Statistics
Matches: 187, Mismatches: 29, Indels: 17
0.80 0.12 0.07
Matches are distributed among these distances:
156 5 0.03
157 133 0.71
158 49 0.26
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
CAGCTAAGCACTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCACCAGTCGGACAGAGGGTTGTGGCACAGGACCAGTAGCACGCAGAGGGGACCGAGCCAATCC
TCGGCTTGCACATTATGCCTCTCCAGC
Found at i:19800909 original size:26 final size:26
Alignment explanation
Indices: 19800873--19800922 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
19800863 GGCTTAGGCA
19800873 TACGGAGTTCATT-CCATGTCTAAGCC
1 TACGGAGTTCATTCCCA-GTCTAAGCC
19800899 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19800923 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:19801622 original size:157 final size:157
Alignment explanation
Indices: 19801262--19801760 Score: 443
Period size: 157 Copynumber: 3.2 Consensus size: 157
19801252 CCCAGTCCAA
* * ** * * **
19801262 GCATACGGAGTTCATTCCCAGTCTATGA-TCAGACTGGACCGAGGGTTACGGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCA-ACCAGACCAAGGGTTGCGGCAACAGGATCGAC
* * * * * *
19801326 AGCACGCAGGGGGGACCGGGCTAATCCT-TAGCTTGCGCATTTTACCTCTCCGGTCGACTGAGCA
65 AACAC-CAGAGGGGACCGGGCTGATCCTCGA-CTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCA
* * * * *
19801390 CCCACACGGCCGTTTCATGGGATGGCTTAG
128 CCCGCACGGTCGTTTCGTGGGTTGACTTAG
* * * * * * ** *
19801420 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGTCCGAGGGTTGTGGCAAC-GGGGCTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCCAACCAGACCAAGGGTTGCGGCAACAGGATC-GA
* * * *
19801483 CAGCA-CAGAAGGGGATCGGGCTGATCC-CTGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGC
64 CAACACCAG-AGGGGACCGGGCTGATCCTC-GACTTGCGCATTTTGCCTCTCCGGTCGGCTGAGC
* *
19801546 GCTCGCACGGTCGTTTCGTGGGTTGACTTAG
127 ACCCGCACGGTCGTTTCGTGGGTTGACTTAG
*** * * *
19801577 GCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCAACCAGACCAAGGGTTGCGGCAACAGGATCGACA
* * * *
19801642 ACACCAGGGGGGACCGGGTTGATCCTCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCACCC
66 ACACCAGAGGGGACCGGGCTGATCCTCGACTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCACCC
* * * *
19801707 GTACGCTCGTTTTGTGGGTTGTCTTAG
131 GCACGGTCGTTTCGTGGGTTGACTTAG
**
19801734 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
19801761 CATATGGAGT
Statistics
Matches: 270, Mismatches: 61, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 212 0.79
158 53 0.20
159 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCCAACCAGACCAAGGGTTGCGGCAACAGGATCGACA
ACACCAGAGGGGACCGGGCTGATCCTCGACTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCACCC
GCACGGTCGTTTCGTGGGTTGACTTAG
Found at i:19801769 original size:26 final size:27
Alignment explanation
Indices: 19801725--19801777 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
19801715 GTTTTGTGGG
*
19801725 TTGTCTTAGGCATACGGAGTTCATTCC
1 TTGTCTTAAGCATACGGAGTTCATTCC
*
19801752 TTGTC-TAAGCATATGGAGTTCATTCC
1 TTGTCTTAAGCATACGGAGTTCATTCC
19801778 CAGTCTATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TTGTCTTAAGCATACGGAGTTCATTCC
Found at i:19801783 original size:26 final size:26
Alignment explanation
Indices: 19801734--19801784 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19801724 GTTGTCTTAG
**
19801734 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19801760 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19801785 TGATTTTGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19802497 original size:26 final size:26
Alignment explanation
Indices: 19802448--19802500 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19802438 GTTAACTTAG
*
19802448 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19802474 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
19802500 G
1 G
19802501 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19802776 original size:159 final size:157
Alignment explanation
Indices: 19802517--19802808 Score: 336
Period size: 159 Copynumber: 1.8 Consensus size: 157
19802507 TCAGACCAAA
* * *
19802517 GGTTGCGGCAGCAGGATCAGCAGCACGTAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTCTG
1 GGTTGCGGCAGCAGGACCAGCAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATG
* * * ** * *
19802582 CCTCTTCGGTCGACTGAGCGCCCGAATGCCTGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCAT
66 CCTCTTCGGTCGACTCAGCGCCCGAA-GCCTGTTTCATGGGTTGACTTACACATACGGAGTTCAT
19802647 TCCATCTCTAAGCCCCAACCGGATCGAG
130 TCCATCTCTAAGCCCCAACCGGATCGAG
* * * * * * * *
19802675 GGTTGTGGCAGCTGGACCGGCAGCACGCAGAGGGTGACTGGGCCGATTCCTGGGTTGCGCATTAT
1 GGTTGCGGCAGCAGGACCAGCAGCACGCAG-GGGGGACTAGGCCGATCCCCGGCTTGCGCATTAT
* * *
19802740 GCCTTTTCGG-CTGGCTCAGCGCCCGGA-CACTCGTTTCATGGGTTGACTTACACATACGGAGTT
65 GCCTCTTCGGTC-GACTCAGCGCCCGAAGC-CT-GTTTCATGGGTTGACTTACACATACGGAGTT
19802803 CATTCC
127 CATTCC
19802809 CAGTCTAAGA
Statistics
Matches: 109, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 28 0.26
159 80 0.73
ACGTcount: A:0.16, C:0.28, G:0.33, T:0.24
Consensus pattern (157 bp):
GGTTGCGGCAGCAGGACCAGCAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATG
CCTCTTCGGTCGACTCAGCGCCCGAAGCCTGTTTCATGGGTTGACTTACACATACGGAGTTCATT
CCATCTCTAAGCCCCAACCGGATCGAG
Found at i:19802980 original size:26 final size:26
Alignment explanation
Indices: 19802949--19803001 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19802939 GTTGGCTTAG
*
19802949 GCATACAGATTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
19802975 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
19803001 G
1 G
19803002 ATCGGTCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:19803546 original size:342 final size:343
Alignment explanation
Indices: 19802923--19804347 Score: 1510
Period size: 342 Copynumber: 4.2 Consensus size: 343
19802913 TAAGCGGCCG
* * * * * * * **
19802923 CACGCTCGTTTCATAGGTTGGCTTAGGCATACAGATTTCAT-TCCATGTCTAAGCATACAGAGTT
1 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTT
* * * * * * *
19802987 CATTCACAGTCTAAGATCGGTCCA-AATCGAGGGTTGCGACAGCAGGATCGACATCACGC-AGGA
65 CATTCCCAGTCTAAGATCGGACCAGACT-AAGGGTTACGGCAGCAGGATCGACAGCACGCTAGG-
* ** * * * ** * * * *
19803050 AGGGACCAGACCGATCCCTGGCTTGCACATTCTGCCTCTCC-AGCTAGCTGAGCACCCACATGCT
128 -GGGATCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-CCGGCTGAGCGCCCGCACGCC
* * *
19803114 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
191 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* * *
19803179 TTGTGGCAGCGAGACCGGTAGCACGCAGCGGGGGATCGGGCTGATCCCCGACTT-T-CGATTTAT
256 TTGTGGCAGCGGGACCGGCAGCACGCAGCGGGGGATCGGGCTAATCCCCGACTTATGC-A-TTAT
* *
19803242 GCCTCTCCGACTGACTGAGTGCCCA
319 GCCTCTCCGACTGGCTGAGCGCCCA
* ** *
19803267 CACGCTCATTTCGTTGGTTGACTTAGGCA-AGCGGAGTTCATCCCCAGTCTAATAATATGAAGTT
1 CACGCTCATTTCGTGGGTTGACTTAGGCATA-CGGAGTTCATCCCCAGTCTAAGCATATGGAGTT
** * *
19803331 CATTCTTAGTCTAAGATCGGATCGGACTAAGGGTTACGGCAGCAGGATCGACAGCACGC-AGGGG
65 CATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTACGGCAGCAGGATCGACAGCACGCTAGGGG
* * * * *
19803395 AATCAGGTCGATCCCCGGCATGCGCATTCTACCTTTCCGACCGGCTAAGCGCCCGCACGCCCATT
130 GATCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTT
* * * *
19803460 TCGTGGGTTGGCTTAGGCATAGGTAGTTGATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTTGT
195 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGT
* * * * *
19803525 GGCAGCGTGACCGACAGCACGCAGCGGGGGATCGAGCTAATCCTCGACTTACGCATTATGCCTCT
260 GGCAGCGGGACCGGCAGCACGCAGCGGGGGATCGGGCTAATCCCCGACTTATGCATTATGCCTCT
* *
19803590 CCGACCGGTTGAGCGCCC-
325 CCGACTGGCTGAGCGCCCA
* *
19803608 CGACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
1 C-ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTT
* * ** * *
19803673 CATTCCCAGTCTAAGATC-GAGCCAGA-TCGAGGGTTGCTACAGTAGGATCGGCAGCAC-CTAGG
65 CATTCCCAGTCTAAGATCGGA-CCAGACT-AAGGGTTACGGCAGCAGGATCGACAGCACGCTAGG
* * * * *
19803735 GGGATCGGGTCGATACCCGGCTTGCACATTCTACCTCTCCAACCGACTGAGCGCCCGCACGCCCG
128 GGGATCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCG
* * *
19803800 TTTTGTGGGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTT
193 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * * * * * *
19803865 ATGGCAGTGGGATCGGTAGCATGCAGTGGGGGACCGGGCTAATCCCCGGCTTATGCATTATGCCT
258 GTGGCAGCGGGACCGGCAGCACGCAGCGGGGGATCGGGCTAATCCCCGACTTATGCATTATGCCT
* *
19803930 CTCTGGCTGGCTGAGCGCCCA
323 CTCCGACTGGCTGAGCGCCCA
* * * *
19803951 CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATCCTCAGTCTAAGCATATGGAGTTC
1 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
* * * *
19804016 ATTCCCAGTCTAAGATTGGACCAGATCGAA-GGTTACGGTAGCAGGATCGACAGCACGCTGGGGG
66 ATTCCCAGTCTAAGATCGGACCAGA-CTAAGGGTTACGGCAGCAGGATCGACAGCACGCT-AGGG
* * * * *
19804080 GGACCAGGTCGATCCCCGGCTTTCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCCCGT
129 GGATCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGT
* * * *
19804145 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGTCGGATCGAGGGTTG
194 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
* * * * ** * * * *
19804210 TGGTAGCGGGACTGGCAGCACGTAGAGGGGGA-CTGGGCCGATCCTCGGCTTGTGCATTATGCAT
259 TGGCAGCGGGACCGGCAGCACGCAGCGGGGGATC-GGGCTAATCCCCGACTTATGCATTATGCCT
* * ** *
19804274 CTTCGACTGGCTCAATGCCCG
323 CTCCGACTGGCTGAGCGCCCA
* ** ** *
19804295 CACGCTCGTTTTATGGGTTGACTTATACATACGGAGTTCATTCCCAGTCTAAG
1 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
19804348 ATCAGACCGG
Statistics
Matches: 896, Mismatches: 167, Indels: 36
0.82 0.15 0.03
Matches are distributed among these distances:
341 5 0.01
342 554 0.62
343 11 0.01
344 321 0.36
345 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (343 bp):
CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
ATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTACGGCAGCAGGATCGACAGCACGCTAGGGGG
ATCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTT
CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
GCAGCGGGACCGGCAGCACGCAGCGGGGGATCGGGCTAATCCCCGACTTATGCATTATGCCTCTC
CGACTGGCTGAGCGCCCA
Found at i:19803671 original size:26 final size:26
Alignment explanation
Indices: 19803635--19803687 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19803625 GTTGACTTAG
19803635 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19803661 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19803687 G
1 G
19803688 ATCGAGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19804016 original size:26 final size:26
Alignment explanation
Indices: 19803977--19804029 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19803967 GTTGACTTAG
19803977 GCATACGGAATTCA-TCCTCAGTCTAA
1 GCATACGGAATTCATTCC-CAGTCTAA
* *
19804003 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19804029 G
1 G
19804030 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:19804269 original size:686 final size:684
Alignment explanation
Indices: 19802920--19804347 Score: 1726
Period size: 686 Copynumber: 2.1 Consensus size: 684
19802910 GACTAAGCGG
* * * * * * *
19802920 CCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACAGATTTCATTCCATGTCTAAGCATACAGAG
1 CCGCACGCTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACAGAG
*
19802985 TTCATTCACAGTCTAAGATCGGTCCAAATCGAGGGTTGCGACAGCAGGATCGACATCACGCAGGA
65 TTCATTCACAGTCTAAGATCGGTCCAAATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGG-
* * * * *
19803050 AGGGACCAGACCGATCCCTGGCTTGCACATTCTGCCTCTCCAGCTAGCTGAGCACCCACATGCTC
129 AGGGACCAGACCGATCCCTGGCTTGCACATTCTACCTCTCCACCGAGCTGAGCACCCACACGCCC
*
19803115 GTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
194 GTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGT
* * *
19803180 TGTGGCAGCGAGACCGGTAGCACGCAGCGGGGGATCGGGCTGATCCCCGACTTTCGATTTATGCC
259 TATGGCAGCGAGACCGGTAGCACGCAGCGGGGGACCGGGCTAATCCCCGACTTTCGATTTATGCC
* * * *
19803245 TCTCCGACTGACTGAGTGCCCACACGCTCATTTCGTTGGTTGACTTAGGCAAGCGGAGTTCATCC
324 TCTCCGACTGACTGAGCGCCCACACACTCATTTCGTGGGTTGACTTAGGCAAGCGGAATTCATCC
* ** * * *
19803310 CCAGTCTAATAATATGAAGTTCATTCTTAGTCTAAGATCGGATCGGACTAAGGGTTACGGCAGCA
389 CCAGTCTAAGAATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACGAAGGGTTACGGCAGCA
* *
19803375 GGATCGACAGCACGCAGGGGAATCAGGTCGATCCCCGGCATGCGCATTCTACCTTTCCGACCGGC
454 GGATCGACAGCACGCAGGGGAACCAGGTCGATCCCCGGCATGCGCATTCTACCTCTCCGACCGGC
* *
19803440 TAAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGTAGTTGATTCCATGTCTAAGCC
519 TAAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * *
19803505 CCAGTCAGACCGAAGGTTGTGGCAGCGTGACCGACAGCACGCAGCGGGGGATCGAGCTAATCCTC
584 CCAGTCAGACCGAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCCAATCCTC
* * * *
19803570 GACTTACGCATTATGCCTCTCCGACCGGTTGAGCGC
649 GACTTACGCATTATGCATCTCCGACCGGCTCAACGC
* *
19803606 CC-CGACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
1 CCGC-ACGCTCATTCCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGA
* * * * *
19803670 GTTCATTCCCAGTCTAAGATCGAG-CCAGATCGAGGGTTGCTACAGTAGGATCGGCAGCAC-CTA
64 GTTCATTCACAGTCTAAGATCG-GTCCAAATCGAGGGTTGCGACAGCAGGATCGACAGCACGC-A
* * ** * *
19803733 GG-GGGATCGGGTCGATACCC-GGCTTGCACATTCTACCTCTCCAACCGA-CTGAGCGCCCGCAC
127 GGAGGGACCAGACCGAT-CCCTGGCTTGCACATTCTACCTCTCC-ACCGAGCTGAGCACCCACAC
* * * * *
19803795 GCCCGTTTTGTGGGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGA
190 GCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGA
* * * * * *
19803860 GGGTTATGGCAGTGGGATCGGTAGCATGCAGTGGGGGACCGGGCTAATCCCCGGCTTAT-GCA-T
255 GGGTTATGGCAGCGAGACCGGTAGCACGCAGCGGGGGACCGGGCTAATCCCCGACTT-TCG-ATT
* * * *
19803923 TATGCCTCTCTGGCTGGCTGAGCGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATA-CGGAA
318 TATGCCTCTCCGACTGACTGAGCGCCCACACACTCATTTCGTGGGTTGACTTAGGCA-AGCGGAA
* * * *
19803987 TTCATCCTCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAA-GGTTA
382 TTCATCCCCAGTCTAAGAATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAAGGGTTA
* * * * * *
19804051 CGGTAGCAGGATCGACAGCACGCTGGGGGGGACCAGGTCGATCCCCGGCTTTCGCATTCTGCCTC
446 CGGCAGCAGGATCGACAGCACGC--AGGGGAACCAGGTCGATCCCCGGCATGCGCATTCTACCTC
* * * * *
19804116 TCCGGCCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCA
509 TCCGACCGGCTAAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * * * * *
19804181 TGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCGGGACTGGCAGCACGTAGAGGGGGA-CTG
574 TGTCTAAGCCCCAGTCAGACCGAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATC-G
* * * ** * * *
19804245 GGCCGATCCTCGGCTTGTGCATTATGCATCTTCGACTGGCTCAATGC
638 AGCCAATCCTCGACTTACGCATTATGCATCTCCGACCGGCTCAACGC
* ** **
19804292 CCGCACGCTCGTTTTATGGGTTGACTTATACATACGGAGTTCATTCCCAGTCTAAG
1 CCGCACGCTCATTCCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
19804348 ATCAGACCGG
Statistics
Matches: 625, Mismatches: 102, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
684 276 0.44
685 15 0.02
686 328 0.52
687 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (684 bp):
CCGCACGCTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAGT
TCATTCACAGTCTAAGATCGGTCCAAATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGAG
GGACCAGACCGATCCCTGGCTTGCACATTCTACCTCTCCACCGAGCTGAGCACCCACACGCCCGT
TTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTA
TGGCAGCGAGACCGGTAGCACGCAGCGGGGGACCGGGCTAATCCCCGACTTTCGATTTATGCCTC
TCCGACTGACTGAGCGCCCACACACTCATTTCGTGGGTTGACTTAGGCAAGCGGAATTCATCCCC
AGTCTAAGAATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACGAAGGGTTACGGCAGCAGG
ATCGACAGCACGCAGGGGAACCAGGTCGATCCCCGGCATGCGCATTCTACCTCTCCGACCGGCTA
AGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGTCAGACCGAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCCAATCCTCGA
CTTACGCATTATGCATCTCCGACCGGCTCAACGC
Found at i:19804294 original size:159 final size:160
Alignment explanation
Indices: 19804122--19804507 Score: 374
Period size: 159 Copynumber: 2.4 Consensus size: 160
19804112 CCTCTCCGGC
* * * * *
19804122 CGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTA
1 CGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTA
* * * * * * ** * *
19804187 AGCCCCAG-TCGGATCGAGGGTTGTGGTAGCGGGA-CTGGCAGCACGTAGAGGGGGA-CTGGGCC
66 AGCACCAGACCGGACCGAGGGTTGCGGTAGCAGGATC-GACAGCACACAAAGGGGGATC-GAGCC
* *
19804249 GATCCTCGGCTTGTGCATTATGCATCT-TCGA
129 GATCCTCAGCTTGTGCATTATACATCTCTCGA
** * ** *
19804280 CTGGCTCAA-TGCCCGCACGCTCGTTTTATGGGTTGACTTATACATACGGAGTTCATTCCCA-GT
1 C-GGCT-AAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-TCATGT
* *
19804343 CTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCACACAAAGGGGGATCGAGC
63 CTAAGCACCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAAAGGGGGATCGAGC
* * * * * *
19804407 TGATCTTCAGCTTGTGCATTCTACCTCTCTGGT
128 CGATCCTCAGCTTGTGCATTATACATCTCTCGA
* *
19804440 CGGCTAAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCA-TTCATGTCTA
1 CGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTA
19804504 AGCA
66 AGCA
19804508 TACGGAGTTC
Statistics
Matches: 179, Mismatches: 39, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
157 2 0.01
158 14 0.08
159 155 0.87
160 8 0.04
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (160 bp):
CGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTA
AGCACCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAAAGGGGGATCGAGCCGA
TCCTCAGCTTGTGCATTATACATCTCTCGA
Found at i:19811114 original size:26 final size:26
Alignment explanation
Indices: 19811078--19811128 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19811068 TGACTTAGGT
19811078 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
19811104 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
19811129 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:19811569 original size:27 final size:27
Alignment explanation
Indices: 19811526--19811580 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
19811516 TTGGCCTTAG
19811526 GCATACGGAGTTCCATT-CCATGTCTAA
1 GCATACGGAGTTCCATTCCCA-GTCTAA
19811553 GCATACAGGAGTT-CATTCCCAGTCTAA
1 GCATAC-GGAGTTCCATTCCCAGTCTAA
19811580 G
1 G
19811581 AGTTTGGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 17 0.65
28 9 0.35
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (27 bp):
GCATACGGAGTTCCATTCCCAGTCTAA
Found at i:19812249 original size:26 final size:26
Alignment explanation
Indices: 19812213--19812265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19812203 GTTGACTTAG
19812213 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
19812239 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19812265 G
1 G
19812266 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19814250 original size:26 final size:26
Alignment explanation
Indices: 19814198--19814253 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
19814188 TGGGTTGGCT
*
19814198 TAAGCATACGGAGTTCATTCTATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
19814224 TAAGCATACGGAGTTCATTCCCA-GTC
1 TAAGCATACGGAGTTCATT-CCATGTC
19814250 TAAG
1 TAAG
19814254 ATCAGACTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGTC
Found at i:19814616 original size:26 final size:26
Alignment explanation
Indices: 19814587--19814639 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19814577 GTTGACTTAG
19814587 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19814613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19814639 G
1 G
19814640 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19815609 original size:26 final size:26
Alignment explanation
Indices: 19815573--19815622 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
19815563 GCCTTAGGCG
19815573 TACGAAGTTCATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
*
19815599 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
19815623 AGTTTGACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:19816346 original size:26 final size:26
Alignment explanation
Indices: 19816309--19816361 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19816299 GTTGACTTAG
*
19816309 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
19816335 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19816361 G
1 G
19816362 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19816862 original size:26 final size:26
Alignment explanation
Indices: 19816810--19816862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19816800 GTTGGCTTAG
*
19816810 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19816836 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
19816862 G
1 G
19816863 GTCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19817534 original size:159 final size:159
Alignment explanation
Indices: 19817334--19817711 Score: 392
Period size: 159 Copynumber: 2.4 Consensus size: 159
19817324 CCAGCGGAAT
* * * * *
19817334 GCCCGCACGCCCGTTTCATGGGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
*** *
19817398 CCAGACCGAGGGTTGTGGCAGC-GAGACCGACAGCA-ATCAGAGGGGGATCGAGCCGATCCTCGA
66 CCAGACCGAGGGTTACAGCAGCAG-GACCGACAGCACAT-AG-GGGGGATCGAGCCGATCCCCGA
19817461 CTTGCGCATTATGCCTCTCCGACCGGCACAGC
128 CTTGCGCATTATGCCTCTCCGACCGGCACAGC
* * * * *
19817493 GCCCGA-ACTCTCGTTTCCTGGGTTGACTTAGGCAAACGGAGTTCATTCCCA-GTCTAAG-ATCA
1 GCCC-ACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA
* * * ** * * *
19817555 GATCAGATCGAGGGTTACAGTAGCAGGATTGACAGCACGTAGGGGGGATCGGGTCGATCCCCGAC
64 GACCAGACCGAGGGTTACAGCAGCAGGACCGACAGCACATAGGGGGGATCGAGCCGATCCCCGAC
* **
19817620 TTGCGCATTCTGCCTCTCCGACCGGCTGAGC
129 TTGCGCATTATGCCTCTCCGACCGGCACAGC
** *
19817651 GCCCACACGCTCGTTTTGTGGGGTTGGCTTAGGCCTACGGAGGTT-ATTCCATGTCTAAGCA
1 GCCCACACGCTCGTTTCAT-GGGTTGGCTTAGGCATACGGA-GTTCATTCCATGTCTAAGCA
19817712 TATGGAGTTC
Statistics
Matches: 178, Mismatches: 31, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
157 1 0.01
158 68 0.38
159 100 0.56
160 9 0.05
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
CCAGACCGAGGGTTACAGCAGCAGGACCGACAGCACATAGGGGGGATCGAGCCGATCCCCGACTT
GCGCATTATGCCTCTCCGACCGGCACAGC
Found at i:19818705 original size:158 final size:156
Alignment explanation
Indices: 19818441--19818740 Score: 360
Period size: 158 Copynumber: 1.9 Consensus size: 156
19818431 AGTCGGACCG
* **
19818441 AGGGTTGTGGCACGGACCGGTAGCACGCAGAGGGGATCAGGCCAATCCTCGACTTGCGTATTATG
1 AGGGTTGTGGCACGGACCGATAGCACGCAGAGGGGATCAGGCCAATCCTCGACTTGCACATTATG
* * * *
19818506 CCTCTCCAGTCGGCTCAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCA
66 CCTCTCCAGTCGGCTAAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG-AGTTCA
19818570 TTCCCA-GTCTAAGATTAGACCGAACAA
130 TT-CCATGTCTAAGATTAGACCGAACAA
* *
19818597 AGGGTTGTGGCAGCAGGATCGATAGCACGCAG-GGGGCATC-GAGCCGATCCAT-GACTTGCACA
1 AGGGTTGTGGCA-C-GGACCGATAGCACGCAGAGGGG-ATCAG-GCCAATCC-TCGACTTGCACA
* ** * *
19818659 TTCTGCCTCTCC-GATCGGCTAAGTGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGA
61 TTATGCCTCTCCAG-TCGGCTAAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGA
19818723 GTTCATTCCATGTCTAAG
125 GTTCATTCCATGTCTAAG
19818741 CCTACAGAGT
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
156 12 0.10
157 10 0.08
158 98 0.80
159 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (156 bp):
AGGGTTGTGGCACGGACCGATAGCACGCAGAGGGGATCAGGCCAATCCTCGACTTGCACATTATG
CCTCTCCAGTCGGCTAAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
TCCATGTCTAAGATTAGACCGAACAA
Found at i:19818747 original size:26 final size:26
Alignment explanation
Indices: 19818717--19818766 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
19818707 GGCTTAGGCA
19818717 TACAGAGTTCATT-CCATGTCTAAGCC
1 TACAGAGTTCATTCCCA-GTCTAAGCC
19818743 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
19818767 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCC
Done.