Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 183 of 402
Found at i:19819072 original size:171 final size:168
Alignment explanation
Indices: 19818743--19819101 Score: 454
Period size: 171 Copynumber: 2.1 Consensus size: 168
19818733 TGTCTAAGCC
* * *
19818743 TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGGTAGCAGGACCGCAGTAG
1 TACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTATGGCAGCAAGACCGCAGTAG
* * * ** *
19818808 GATCGACGGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTTACCTCTCCGGTCGGCT
66 GATCGACAGCACGCAGGGGGGACCGGGCTAATCCCCGGCTTACGAATTTACCTCTCCGGTCGGCT
* *
19818873 GAGTGCCCGCACGCTCATTATATGGGTTGGCTTAGGCA
131 GAGCGCCCGCACGCTCATTATATGGGTTGACTTAGGCA
** * * *
19818911 TAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTATGGCAGCAAGACTGACAG
1 TACAGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTATGGCAGCAAGACCG-CAG
* * *
19818974 TGGGATCGACAGCACGCAGAGGGGGACCGGGCTAATCCTCGGCTTACGAATTATGCCTCTCCGGT
63 TAGGATCGACAGCACGCAG-GGGGGACCGGGCTAATCCCCGGCTTACGAATT-TACCTCTCCGGT
*
19819039 CGGCTGAGCGCCCGTACGCTCATT-TCATGGGTTGACTTAGGCA
126 CGGCTGAGCGCCCGCACGCTCATTAT-ATGGGTTGACTTAGGCA
*
19819082 TACAGAGTTCATCCCCAGTC
1 TACAGAGTTCATTCCCAGTC
19819102 CAAGCATACG
Statistics
Matches: 161, Mismatches: 23, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
167 3 0.02
168 43 0.27
169 22 0.14
170 28 0.17
171 62 0.39
172 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (168 bp):
TACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTATGGCAGCAAGACCGCAGTAG
GATCGACAGCACGCAGGGGGGACCGGGCTAATCCCCGGCTTACGAATTTACCTCTCCGGTCGGCT
GAGCGCCCGCACGCTCATTATATGGGTTGACTTAGGCA
Found at i:19819163 original size:365 final size:354
Alignment explanation
Indices: 19818662--19819314 Score: 839
Period size: 354 Copynumber: 1.8 Consensus size: 354
19818652 TTGCACATTC
* * *
19818662 TGCCTCTCCGATCGGCTAAGTGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTC
1 TGCCTCTCCGATCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
* * * *
19818727 ATTCCATGTCTAAGCCTACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGGT
66 ATCCCATGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTA-CG-
* * * * *
19818792 AGCAGGACCGCAGTAGGATCGACGGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCA-TT
129 A-CA-G-CAGGA-TAGG--C-A--GCACGCAGGGGGGACCGGG-TAATCCCCAGCTTGTGCATTT
* * ** *
19818856 TACCTCTCCGGTCGGCTGAGTGCCCGCAC-GCTCATTAT-ATGGGTTGGCTTAGGCATAGGGAGT
184 TACCTCTCCGGCCGACTGAGCACCCGCACGGC-CATT-TCATGGGATGGCTTAGGCATAGGGAGT
*
19818919 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCAAGACTGACAGTGGGATCGAC
247 TCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAAGACTGACAGTGGGATCGAC
19818984 AGCACGCAGAGGGGGACCGGGCTAATCCTCGGCTTACGAATTA
312 AGCACGCAGAGGGGGACCGGGCTAATCCTCGGCTTACGAATTA
* * *
19819027 TGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
1 TGCCTCTCCGATCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
* * *
19819092 ATCCCCA-GTCCAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACG
66 AT-CCCATGTCCAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACG
* * **
19819155 ACAGCAGGATCGGCAGCACGCAGGGGGGATCGGGTAATCCTTAGCTTGTGCATTTTACCTCTCCG
129 ACAGCAGGATAGGCAGCACGCAGGGGGGACCGGGTAATCCCCAGCTTGTGCATTTTACCTCTCCG
*
19819220 GCCGACTGAGCACCCGCACGGCCGTTTCATGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTC
194 GCCGACTGAGCACCCGCACGGCCATTTCATGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * *
19819285 TAAGCCCCAGCCAGTCTGAGGGTTGTGGCA
259 TAAGCCCCAGCCAGACCGAGGGTTATGGCA
19819315 ATGGGGCCGG
Statistics
Matches: 251, Mismatches: 32, Indels: 21
0.83 0.11 0.07
Matches are distributed among these distances:
353 15 0.06
354 109 0.43
355 2 0.01
356 1 0.00
357 1 0.00
359 3 0.01
360 3 0.01
361 1 0.00
362 2 0.01
363 1 0.00
364 2 0.01
365 108 0.43
366 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (354 bp):
TGCCTCTCCGATCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
ATCCCATGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGAC
AGCAGGATAGGCAGCACGCAGGGGGGACCGGGTAATCCCCAGCTTGTGCATTTTACCTCTCCGGC
CGACTGAGCACCCGCACGGCCATTTCATGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGCCAGACCGAGGGTTATGGCAGCAAGACTGACAGTGGGATCGACAGCACGCAGAGGGG
GACCGGGCTAATCCTCGGCTTACGAATTA
Found at i:19819464 original size:157 final size:157
Alignment explanation
Indices: 19819303--19819602 Score: 379
Period size: 157 Copynumber: 1.9 Consensus size: 157
19819293 AGCCAGTCTG
** * * *
19819303 AGGGTTGTGGCAATGGGGCCGGCAGCA-CAGAGGGGGATCGGGATGATCC-CTGACTTGCGCATT
1 AGGGTTGTGGCAACAGGACCGACAACACCAG-GGGGGATCGGGATGATCCTC-GACTTGCGCATT
* * *
19819366 ATGCCTCTCCGATCAGCTCAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
64 ATGCCTCTCCGACCAGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
19819431 CATTCCCAGTCTAAGATTGAATCGGACCA
129 CATTCCCAGTCTAAGATTGAATCGGACCA
* * * * *
19819460 AGGGTTGTGGCAGCAGGATCGATAACACCAGGGGGGATCGGGTTGATCCTCGACTTGCGCATTCT
1 AGGGTTGTGGCAACAGGACCGACAACACCAGGGGGGATCGGGATGATCCTCGACTTGCGCATTAT
* * * * * *
19819525 GCCTCTTCGGCCGGCTGAGCGCCCATACGCTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCA
66 GCCTCTCCGACCAGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
**
19819590 TTCCTTGTCTAAG
131 TTCCCAGTCTAAG
19819603 CATACGGAGT
Statistics
Matches: 120, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
157 116 0.97
158 4 0.03
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (157 bp):
AGGGTTGTGGCAACAGGACCGACAACACCAGGGGGGATCGGGATGATCCTCGACTTGCGCATTAT
GCCTCTCCGACCAGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATTGAATCGGACCA
Found at i:19819607 original size:26 final size:27
Alignment explanation
Indices: 19819567--19819619 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
19819557 GTTTCGTGGG
*
19819567 TTGTCTTAGGCATACGGAGTTCATTCC
1 TTGTCTTAAGCATACGGAGTTCATTCC
19819594 TTGTC-TAAGCATACGGAGTTCATTCC
1 TTGTCTTAAGCATACGGAGTTCATTCC
19819620 CAATCTATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
TTGTCTTAAGCATACGGAGTTCATTCC
Found at i:19819626 original size:26 final size:26
Alignment explanation
Indices: 19819576--19819626 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19819566 GTTGTCTTAG
***
19819576 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19819602 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
19819627 TGATTTTGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19820347 original size:26 final size:26
Alignment explanation
Indices: 19820298--19820350 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19820288 GTTAACTTAG
*
19820298 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
19820324 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
19820350 G
1 G
19820351 ATTGGATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19820656 original size:159 final size:158
Alignment explanation
Indices: 19820493--19820826 Score: 352
Period size: 158 Copynumber: 2.1 Consensus size: 158
19820483 CGTAGGGAGC
* * *
19820493 TCATTCCATCTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGG
1 TCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG-GG
* * * * *
19820558 GTGACTGGGTCGATTC-CTGGCTT-GCGCATTATGCCTTTTCGG-CTGCCTCAGCGCCCACACAC
65 GGGACCGGGTCGA-TCACTGGCTTAG-GCATTATGCCTCTCCGGTC-GCCTAAGCGCCCACACAC
*
19820620 TCGTTTCATGGGTTGACTTACACATACAGAGT
127 TCGTTTCATAGGTTGACTTACACATACAGAGT
** ** * * * * * *
19820652 TCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGTAGGATCGATAGCATGTAGGG
1 TCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGG
* * * *
19820716 GGGACCGGGTCGATCACTGGCTTAGGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCTCG
65 GGGACCGGGTCGATCACTGGCTTAGGCATTATGCCTCTCCGGTCGCCTAAGCGCCCACACACTCG
* ** *
19820781 TTTCATAGGTTGGCTTAGGCATACAGATT
130 TTTCATAGGTTGACTTACACATACAGAGT
19820810 TCATTCCATGTCTAAGC
1 TCATTCCATGTCTAAGC
19820827 ATACAGAGTT
Statistics
Matches: 142, Mismatches: 28, Indels: 11
0.78 0.15 0.06
Matches are distributed among these distances:
157 5 0.04
158 87 0.61
159 47 0.33
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
TCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGG
GGACCGGGTCGATCACTGGCTTAGGCATTATGCCTCTCCGGTCGCCTAAGCGCCCACACACTCGT
TTCATAGGTTGACTTACACATACAGAGT
Found at i:19820830 original size:26 final size:26
Alignment explanation
Indices: 19820799--19820851 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19820789 GTTGGCTTAG
*
19820799 GCATACAGATTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
19820825 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
19820851 G
1 G
19820852 ATCGGTCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:19821359 original size:342 final size:341
Alignment explanation
Indices: 19820886--19822209 Score: 1453
Period size: 342 Copynumber: 3.9 Consensus size: 341
19820876 CAGCAGGACA
* *
19820886 GGCAGCAGGATCGACATCACGC-AGGAGGGGA-CCGGACCGATCCCCGGCTTGCACATTCTGCCT
1 GGCAGCAGGATCGACAGCAC-CTA-G-GGGGATCAGG-CCGATCCCCGGCTTGCACATTCTGCCT
** * * * * * *
19820949 CTCCGCCCGGTTGAGCACCCACATGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCC
62 CTCCAACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
*
19821014 ATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACT-AGTAGCACGCAGCGGGGGACC
127 ATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACTGA-CAGCACGCAGCGGGGGACC
* * *
19821078 GGGCTGATCCCCGACTT-TCGCATTATGCCTCTCCGACCGACTGAGTGCCCACACGCTCATTTCG
191 GGGCTGATCCCCGACTTAT-GCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCTCATTTCA
* * **
19821142 TTGGTTGACTTAAGCA-AGCGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCTTAGTCTA
255 TGGGTTGACTTAAGCATA-CGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
*
19821206 AGATCAGACCGGA-CTAAGGGTTGT
319 AGATC-GACCAGATC-AAGGGTTGT
* * * * *
19821230 GGCAGCAGGATCGACAGCACGTAGGGGGATCAGGCCGATCCCTGGCATGCGCATTCTGCCTCTCT
1 GGCAGCAGGATCGACAGCACCTAGGGGGATCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCC
* * *
19821295 AACCGGCTAAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGT
66 AACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
** * * * * *
19821360 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGTGACCGACAGCATGCAGCGGGGGATCGAGCT
131 CTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACTGACAGCACGCAGCGGGGGACCGGGCT
* * * ** *
19821425 GATCCTCGACTTACGCATTATGCCTTTCCGGTCGGTTGAGCGCCC-CGACGCTCATTTCATGGGT
196 GATCCCCGACTTATGCATTATGCCTCTCCGACCGGCTGAGCGCCCAC-ACGCTCATTTCATGGGT
* *
19821489 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
260 TGACTTAAGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
*
19821554 AGCCAGATCGAGGGTTGCT
325 A-CCAGATCAAGGGTTG-T
* ** * * *
19821573 -ACAGCAGGATCGGTAGCACCTAGGGGGATCGGGTCGATACCCGGCTTGCACATTCTGCCTCTCC
1 GGCAGCAGGATCGACAGCACCTAGGGGGATCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCC
* * *
19821637 AACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTCGGCATAGGGAGTTTATTCCATGT
66 AACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * * * * * * **
19821702 CTAAGCCCCAACTGGATCGAGGGTTATGGTAGTGGGACTGACAGTATGTAGTAGGGGACCGGGCT
131 CTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACTGACAGCACGCAGCGGGGGACCGGGCT
* * * * * * * *
19821767 AATCCCCGGCTTATACATTATGCCTCTCTGGCTGGCTGAGCGCCCACACACTCGTTTCATGGGTT
196 GATCCCCGACTTATGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCTCATTTCATGGGTT
* *
19821832 GACTTAGGCATACGGAGTTCAT-CCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
261 GACTTAAGCATACGGAGTTCATCCCT-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TC
**
19821896 GACCAGATCAAGGGTTAC
324 GACCAGATCAAGGGTTGT
* * * * * * * * *
19821914 GGTAGTAGGATCAACAGCACACTGGGGGGGACCAGGCTGATCCCCGACTTTCGCATTCTGCCTCT
1 GGCAGCAGGATCGACAGCAC-CT-AGGGGGATCAGGCCGATCCCCGGCTTGCACATTCTGCCTCT
* * * * *
19821979 CCAGCCGGCTGAGCGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCAT
64 CCAACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
** * * * *
19822044 GTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCGAGACTGGCAGCACGCAGAGGGGGACCGGG
129 GTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACTGACAGCACGCAGCGGGGGACCGGG
* * * * * * * * * * **
19822109 CCGATCCTCGGCTTGTGCATTATGCCTCTTCGACTGGCTCAACGCCCGCACGCTCTTTTTGTGGG
194 CTGATCCCCGACTTATGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCTCATTTCATGGG
*
19822174 TTGACTTATA-CATACGGAGTTCATTCCTAGTCTAAG
259 TTGACTTA-AGCATACGGAGTTCATCCCTAGTCTAAG
19822210 ATCAGACCGG
Statistics
Matches: 820, Mismatches: 143, Indels: 34
0.82 0.14 0.03
Matches are distributed among these distances:
341 5 0.01
342 556 0.68
343 14 0.02
344 242 0.30
345 3 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (341 bp):
GGCAGCAGGATCGACAGCACCTAGGGGGATCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCC
AACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACTGACAGCACGCAGCGGGGGACCGGGCT
GATCCCCGACTTATGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCTCATTTCATGGGTT
GACTTAAGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
CCAGATCAAGGGTTGT
Found at i:19821527 original size:26 final size:26
Alignment explanation
Indices: 19821497--19821549 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19821487 GTTGACTTAG
19821497 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19821523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19821549 G
1 G
19821550 ATCGAGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19821869 original size:26 final size:26
Alignment explanation
Indices: 19821839--19821891 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19821829 GTTGACTTAG
19821839 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
19821865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19821891 G
1 G
19821892 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19822173 original size:159 final size:160
Alignment explanation
Indices: 19821906--19822370 Score: 419
Period size: 159 Copynumber: 2.9 Consensus size: 160
19821896 GACCAGATCA
* * * * * * * *
19821906 AGGGTTACGGTAGTAGGATCAACAGCACACTGGGGGGGACC-AGGCTGATCCCCGACTT-TCGCA
1 AGGGTTGCGGTAGGAGGATCGACAGCACACAGAGGGGGACCGA-GCCGATCCTCGGCTTGT-GCA
* * * * * * * * *
19821969 TTCTGCCTCTC-CAGCCGGCTGAGCGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
64 TTATACCTCTCTGA-CTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* * *
19822033 GTTCATTTCATGTCTAAGCCCCAG-TCGGATCG
128 GTTCATTTCATGTCTAAGCACCAGACCGGACCG
* * * *
19822065 AGGGTTGTGGTAGCGA-GA-CTGGCAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCA
1 AGGGTTGCGGTAG-GAGGATC-GACAGCACACAGAGGGGGACCGAGCCGATCCTCGGCTTGTGCA
* * * * **
19822128 TTATGCCTCT-TCGACTGGCTCAA-CGCCCGCACGCTCTTTTTGTGGGTTGACTTATACATACGG
64 TTATACCTCTCT-GACTGGCT-AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* *
19822191 AGTTCA-TTCCTAGTCTAAG-ATCAGACCGGACCG
127 AGTTCATTTCAT-GTCTAAGCACCAGACCGGACCG
* * * *
19822224 AGGGTTGCGGTAGTAGGATCGACAGCACACAGAGGGGGATCGAGCTGATCTTCGGCTTGTGCATT
1 AGGGTTGCGGTAGGAGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCTCGGCTTGTGCATT
* * * *
19822289 CTACCTCTCTGGCTGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTT
66 ATACCTCTCTGACTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
*
19822354 CATTCCATGTCTAAGCA
131 CATTTCATGTCTAAGCA
19822371 TACGGAGTTC
Statistics
Matches: 241, Mismatches: 50, Indels: 29
0.75 0.16 0.09
Matches are distributed among these distances:
158 11 0.05
159 220 0.91
160 10 0.04
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (160 bp):
AGGGTTGCGGTAGGAGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCTCGGCTTGTGCATT
ATACCTCTCTGACTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTTCATGTCTAAGCACCAGACCGGACCG
Found at i:19828983 original size:26 final size:26
Alignment explanation
Indices: 19828947--19828997 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19828937 TGACTTAGGT
19828947 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
19828973 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
19828998 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:19829356 original size:159 final size:158
Alignment explanation
Indices: 19828979--19829358 Score: 451
Period size: 159 Copynumber: 2.4 Consensus size: 158
19828969 AAGCATACGG
* * *
19828979 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGTAGGATCGACAACACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAG
* * * * *
19829044 GGGTGACCGGGCCAATCCCTGGCTTGCGCATTCTACCTCTCCGACTGACTGAGCACCCGCACGCC
66 GGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTGAGCACCCGCACGCA
* * *
19829109 CGTTTCGTGGGTTGGCTTAGGCATAAGG
131 AGTTTCGTGGGTTGACTTAGGCATAAGA
* * ** * * * *
19829137 AGTTTATT-TCATGTCTAAGCCCCA-ACCGGACCGAAGGTTGTGGCAGTGGGACCGACAGCACGC
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGC
* * * * * *
19829200 AGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTTAGCACCTGCAC
64 AG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTGAGCACCCGCAC
19829265 GCAAGTTTCGTGGGTTGACTTAGGCATACA-A
128 GCAAGTTTCGTGGGTTGACTTAGGCATA-AGA
* * *
19829296 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGC
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGC
19829359 TGACTGCCTG
Statistics
Matches: 180, Mismatches: 36, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 51 0.28
159 124 0.69
160 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAG
GGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTGAGCACCCGCACGCA
AGTTTCGTGGGTTGACTTAGGCATAAGA
Found at i:19829427 original size:26 final size:26
Alignment explanation
Indices: 19829397--19829447 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19829387 TGGCTTAGGT
19829397 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
19829423 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19829448 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19830123 original size:26 final size:26
Alignment explanation
Indices: 19830087--19830139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19830077 GTTGACTTAG
19830087 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
19830113 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19830139 G
1 G
19830140 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19831141 original size:26 final size:26
Alignment explanation
Indices: 19831105--19831156 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19831095 TGGCTTAGGC
19831105 ATACGAAGTTCATT-CCATGTCTAAGA
1 ATACGAAGTTCATTCCCA-GTCTAAGA
*
19831131 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
19831157 TTTTGAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:19832169 original size:159 final size:156
Alignment explanation
Indices: 19831879--19832349 Score: 531
Period size: 159 Copynumber: 3.0 Consensus size: 156
19831869 GTAAGATCAG
* * * * *
19831879 ACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGTCGATCCCTGGC
1 ACCGGATCGAGGGTTGTGGCAGCGGGACCGACAG-ACACAGAGGGGGATCGGGCCGATCCC-GGC
* * * * * *
19831943 TTGCGCATTCTGCCTCTCCGATCGGTTGAGC-CTCCACACGCCCATTTCATGAGTTGGCTTAGAC
64 TTGCGCATTCTGCCTCTCCGGTCAGTCGAGCAC-CCGCACGCCCGTTTCATG-GTTGGCTTAGGC
*
19832007 ATAGGGAGTTCATTCCATGTCTATGCCCCA
127 ATAGGGAGTTCATTCCATGTCTAAGCCCCA
*
19832037 ACCGGATCGAGGGTTGTGGCAGCGGGACCGACAGTACACAGAGGGGGATCGAGCCGATCCGCGGC
1 ACCGGATCGAGGGTTGTGGCAGCGGGACCGACAG-ACACAGAGGGGGATCGGGCCGATCC-CGGC
*
19832102 TTGCGCATTCTACCTCTCCGGTCAGTCGAGCACCCGCACGCCCGTTTCATGCGTTGGCTTAGGCA
64 TTGCGCATTCTGCCTCTCCGGTCAGTCGAGCACCCGCACGCCCGTTTCATG-GTTGGCTTAGGCA
19832167 TAGGGAGTTCATTCCATGTCTAAGCCCCA
128 TAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * *
19832196 GCCGGACCAAGGGTTGTGGCAGCGGGACC-AGCA-ACACGTAGAGGGGGATCGGGCTGATCCCCG
1 ACCGGATCGAGGGTTGTGGCAGCGGGACCGA-CAGACAC--AGAGGGGGATCGGGCCGAT-CCCG
* * * * ** *
19832259 GCTTGCGCATTTTGCCTCTCCGG-CTGGCTAAGCACCCGCACGCTTGTTTCGTAGGTTGGCTTAG
62 GCTTGCGCATTCTGCCTCTCCGGTCAGTC-GAGCACCCGCACGCCCGTTTCAT-GGTTGGCTTAG
* *
19832323 GCATACGAAGTTCATTCCCA-GTCTAAG
125 GCATAGGGAGTTCATT-CCATGTCTAAG
19832350 AGTTTGAGCC
Statistics
Matches: 272, Mismatches: 31, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
157 4 0.01
158 40 0.15
159 220 0.81
160 8 0.03
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (156 bp):
ACCGGATCGAGGGTTGTGGCAGCGGGACCGACAGACACAGAGGGGGATCGGGCCGATCCCGGCTT
GCGCATTCTGCCTCTCCGGTCAGTCGAGCACCCGCACGCCCGTTTCATGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCA
Found at i:19833468 original size:159 final size:159
Alignment explanation
Indices: 19833102--19833540 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 159
19833092 CAGGATCAAT
* * * * * * * * *
19833102 AGCACGCAG-GAGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCA
1 AGCACGCAGAGCGGGACCGGGCTAATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAACG
* * * * * *
19833166 TCCGCACGCCCGTTTCATGGGTTGGTTTAGACATAGGGAGTTCATTCCATGTCTACGCCCCAGCC
66 CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCC
19833231 AGACCGAGGGTTGTGGCAGCGGAACCGAA
131 AGACCGAGGGTTGTGGCAGCGGAACCGAA
** * * * * * **
19833260 AGCACGCAGAGCGGGACCTTGCTAATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGTTGAGTG
1 AGCACGCAGAGCGGGACCGGGCTAATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAACG
* **
19833325 CCCGTACGCCTGTTTCATGCATTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCC
66 CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCC
* * *
19833390 GGACCGAGGGTTGTGGCAGCGGGACCAGCA
131 AGACCGAGGGTTGTGGCAGCGGAACC-GAA
* * * * * * * *
19833420 A-CACGTAGTGGGGGATCGGG-TCGATCCTCGACTTGGGCATTTTACCTCTCCGGCCGGCTGAAC
1 AGCACGCAGAGCGGGACCGGGCT-AATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAAC
* * * * ** *
19833483 GCCCGCACGCTTGTTTCGTGGGTTAGCTTAAGCATACAGAGTTCATTCCCAGTCTAAG
65 GCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
19833541 AGTTTGAGCC
Statistics
Matches: 227, Mismatches: 51, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
158 10 0.04
159 214 0.94
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCACGCAGAGCGGGACCGGGCTAATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAACG
CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCC
AGACCGAGGGTTGTGGCAGCGGAACCGAA
Found at i:19834240 original size:26 final size:26
Alignment explanation
Indices: 19834211--19834263 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19834201 GTTAACTTAG
* * *
19834211 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGCCTAA
*
19834237 GCATAAGGAGTTCATTCCCAGCCTAA
1 GCATAAGAAGTTCATTCCCAGCCTAA
19834263 G
1 G
19834264 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGCCTAA
Found at i:19834756 original size:158 final size:158
Alignment explanation
Indices: 19834273--19834897 Score: 612
Period size: 158 Copynumber: 3.9 Consensus size: 158
19834263 GATCGGACCA
* * * *
19834273 GACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCA
1 GACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCA
* * **
19834338 CATTCTGCCTCTCCAGTTGGCTGAGCACCCATACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
* * *
19834403 AGTTCATTCCATATATAAGCCCCAGTCG
131 AGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * * * * * *
19834431 GGCTAAGGGTTGTGGCAGCGGGACCGGCAGCACGC-AGAGGCGATCGCGTCGATCCCCAGCTTAC
1 GACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAG-GGGGATCGGGCCGATCCCCGGCTTGC
* * ** * * * * * *
19834495 GCATTATGCCTCTCCGACCTGCTCAGCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCAT-GC
65 ACATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG-
* **** * *
19834559 GGAGTTCATTCCCA-GTGTAAGATTGAACCA
129 GGAGTTCATT-CCATGTCTAAGCCCCAGCCG
* * *
19834589 GACCAAGGGTTGCGGTAGCAGGATTGGTAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCA
1 GACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCA
* * * *
19834654 CATTCTACCTCTCTGGTAGGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
19834719 AGTTCATTCCATGTCTAAGCCCCAGCCG
131 AGTTCATTCCATGTCTAAGCCCCAGCCG
* * ** * * * *
19834747 GATCGAGGGTTTTGGCAG-TGGTTTCGACAGCACACAGAGGGGGAAT-GGGCCGATCCCCGGCTT
1 GACCAAGGGTTGCGGCAGCAGG-ATCGGCAGCACGCA-AGGGGG-ATCGGGCCGATCCCCGGCTT
* * * *
19834810 GCACATTCTGCCTCTCTGGTCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATA
63 GCACATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
** * *
19834875 CAGAGTTTATTCCATGACTAAGC
128 GGGAGTTCATTCCATGTCTAAGC
19834898 ATACGAAGTT
Statistics
Matches: 367, Mismatches: 91, Indels: 17
0.77 0.19 0.04
Matches are distributed among these distances:
157 7 0.02
158 251 0.68
159 107 0.29
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCA
CATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCG
Found at i:19835851 original size:158 final size:158
Alignment explanation
Indices: 19835627--19835961 Score: 476
Period size: 158 Copynumber: 2.1 Consensus size: 158
19835617 AAGAGTACAA
** *
19835627 AGTTCATTCTGAGTCTAAGATCGGACCGAACCGAGGGTTGTGACAGTAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAG
* *
19835692 GGGGGACCGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGTTGAGCGCCCGCACGC
66 GGGGGA-CGAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGC
* *
19835756 TCATTTTATGGGTTGACTTAGGCATGCGG
130 TCATTTCATGGGTTGACTTAGGCATACGG
* ** *
19835785 AGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAG
* * * ** *
19835850 GGGGGACGAGGCTGGTCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCACCCGTACGCT
66 GGGGGACGAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCT
*
19835915 CATTTCATGGGTTGGCTTAGGCATACGG
131 CATTTCATGGGTTGACTTAGGCATACGG
19835943 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
19835962 CATATGGAGT
Statistics
Matches: 157, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
157 6 0.04
158 151 0.96
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAG
GGGGGACGAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCT
CATTTCATGGGTTGACTTAGGCATACGG
Found at i:19835985 original size:26 final size:26
Alignment explanation
Indices: 19835935--19835987 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19835925 GTTGGCTTAG
*
19835935 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
19835961 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
19835987 G
1 G
19835988 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:19836529 original size:158 final size:157
Alignment explanation
Indices: 19836171--19836670 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 157
19836161 CCCAATCTAA
* * * * * * *
19836171 GCATACGGAGGTCATTCCCAGTTTAAGATGA-ACCAGACCGAGAGTTACGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * *
19836235 GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTACGCATTCTGGCTCTCCGGCCGACTGAGTGCC
66 GCACGCAGGGGGCATCGGGCCGATCCTCGACTTACACATTATGCCTCTCCGGCCGACTCAGTGCC
*
19836300 CGTACGTTCGTTTCGTGGGTTGGCTTAG
131 CG-ACGTTCGTTTCGTGGGTTGACTTAG
* ** * *
19836328 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGC-GGTATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGG-ATCG
* * * * *
19836390 GTAAG-ACGCAGAGGGGCATCGGGTCGATCCTCGACTTGCACATTATGCCTCTCCGGTCGGCTCA
63 AT-AGCACGCAG-GGGGCATCGGGCCGATCCTCGACTTACACATTATGCCTCTCCGGCCGACTCA
19836454 GTGCCAC-ACGCTT-GTTTCGTGGGTTGACTTAG
126 GTGCC-CGACG-TTCGTTTCGTGGGTTGACTTAG
* * *
19836486 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * * * * * * ** * *
19836551 GCACACAGAGGGG-ATCAGGCTGGTCCCCGGCTTACGCATTCTACCTCTCCGGGCGGTTGAGCGC
66 GCACGCAG-GGGGCATCGGGCCGATCCTCGACTTACACATTATGCCTCTCCGGCCGACTCAGTGC
* * * *
19836615 CCGCACGCTCGTTTCTTAGGTTGGCTTAG
130 CCG-ACGTTCGTTTCGTGGGTTGACTTAG
*
19836644 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
19836671 CATACAGAGT
Statistics
Matches: 274, Mismatches: 53, Indels: 31
0.77 0.15 0.09
Matches are distributed among these distances:
156 4 0.01
157 69 0.25
158 144 0.53
159 56 0.20
160 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGCATCGGGCCGATCCTCGACTTACACATTATGCCTCTCCGGCCGACTCAGTGCC
CGACGTTCGTTTCGTGGGTTGACTTAG
Found at i:19836681 original size:26 final size:26
Alignment explanation
Indices: 19836644--19836696 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19836634 GTTGGCTTAG
19836644 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
19836670 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
19836696 G
1 G
19836697 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19837047 original size:159 final size:158
Alignment explanation
Indices: 19836737--19837179 Score: 507
Period size: 159 Copynumber: 2.8 Consensus size: 158
19836727 GACCAGTAGT
* * * * *
19836737 AGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTACGCATTCTGCCACTCCGACTG
1 AGGATCGACAGCACGCAGGGGGGACCGGGACGATCCTCGGCTTACGCATTCTGCCTCTTCGACCG
* * * * **
19836802 GCTGAGCGCCCGCACGCTGGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTGAACGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTAAAAG
* * * *
19836867 CCCCAGCTGGACTGAGGGTTGTGGCAGC
131 CACCAGATAGACTGAGGGTTGTGACAGC
* * * *
19836895 GGGATCGGCAGCATGCAGAGGGGGACCGGGACGATCC-CTGGCTTACGCATTATGCCTCTTCGAC
1 AGGATCGACAGCACGCAG-GGGGGACCGGGACGATCCTC-GGCTTACGCATTCTGCCTCTTCGAC
* * *
19836959 CGGCTCAACGCCTGAACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTACCA-GTAA
64 CGGCTGAACGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTAA
* * *
19837023 AAG-ATCAGATCAGACTGAGTGTTGTGATAGC
128 AAGCACCAGAT-AGACTGAGGGTTGTGACAGC
* * * **
19837054 AGGATCGACAGCACGCAGGTGGGGATCGAGACAATCCTCGGCTTGTGCATTCTGCCTC-TCTGAC
1 AGGATCGACAGCACGCAGG-GGGGACCGGGACGATCCTCGGCTTACGCATTCTGCCTCTTC-GAC
* * *
19837118 CGGCTGAACGCCCGTACGCTCGTTCCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
64 CGGCTGAACGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
19837180 CTAAGCATAC
Statistics
Matches: 238, Mismatches: 39, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
158 26 0.11
159 208 0.87
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
AGGATCGACAGCACGCAGGGGGGACCGGGACGATCCTCGGCTTACGCATTCTGCCTCTTCGACCG
GCTGAACGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTAAAAG
CACCAGATAGACTGAGGGTTGTGACAGC
Found at i:19837187 original size:26 final size:26
Alignment explanation
Indices: 19837158--19837210 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19837148 GTTGGCTTAG
19837158 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
19837184 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19837210 G
1 G
19837211 ATGAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19837725 original size:26 final size:26
Alignment explanation
Indices: 19837696--19837748 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19837686 ATTGGCTTAG
* *
19837696 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
19837722 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19837748 G
1 G
19837749 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19838436 original size:26 final size:26
Alignment explanation
Indices: 19838402--19838452 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19838392 TGACTTAGGT
*
19838402 ATACGGAGTTCATCCCTATTCTAAGC
1 ATACGGAGTTCATCCCTAGTCTAAGC
* *
19838428 ATACTGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATCCCTAGTCTAAG
19838453 ATTGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATCCCTAGTCTAAGC
Found at i:19839046 original size:13 final size:13
Alignment explanation
Indices: 19839028--19839052 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19839018 TGCGCATTAT
19839028 GCCTCTTCGGTCG
1 GCCTCTTCGGTCG
19839041 GCCTCTTCGGTC
1 GCCTCTTCGGTC
19839053 AGCTGAGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCTCTTCGGTCG
Found at i:19839128 original size:26 final size:26
Alignment explanation
Indices: 19839092--19839144 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19839082 GTTGAGTTAG
*
19839092 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19839118 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19839144 G
1 G
19839145 ATCGGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19839480 original size:159 final size:159
Alignment explanation
Indices: 19839121--19839661 Score: 508
Period size: 159 Copynumber: 3.4 Consensus size: 159
19839111 AGTCTAAGCA
* ** * * *
19839121 TACGGAGTTCA-TCCTCAGTCTAAGATCGGAATGGATCGAGGGTTGCGACAGTAGGATCGGTAGC
1 TACGGAGTTCATTCC-CAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * *
19839185 ACGCAG-GGGGGACCAAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACCC
65 ACGCAGAGGGGGACCAGGCTGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCC
** * *
19839249 GCATGCCCGTTTCGTGGGTTGGCTTAGGCG
130 GCACACTCATTTCGTGGGTTGGCTTAGGCG
* ** * * * * *
19839279 TAGGGAGTTCATT-CCACGTCTAAGCCCCAG-CCAGA-CTGAGGGTTGTGGCAACGGGACCGGCA
1 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCA
* * *
19839341 GCACGCAGAGGGGGATCGGGCTGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCAC
63 GCACGCAGAGGGGGACCAGGCTGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCAC
* * ***
19839406 TCGAACACTCATTTCGTGGGCCAGCTTAGGCG
128 CCGCACACTCATTTCGTGGGTTGGCTTAGGCG
* * *
19839438 TACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * ** *
19839503 CGCA-AGAGGGGACCAGG-TCAATCC-CTGGCTTGCGCATTTTGCCTCTCTGGTCGGTTGAGCAC
66 CGCAGAG-GGGGACCAGGCT-GATCCTC-GACTTGCGCATTATGCCTCTCCGACCGGCTGAGCAC
*
19839565 CCGCACACTCATTTCATGGGTTGGCTTAGG-G
128 CCGCACACTCATTTCGTGGGTTGGCTTAGGCG
* * * * * *
19839596 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGA-CTGAGGGTTACGGCAGTAGGACCAGCAG
1 -TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAG
19839660 CA
64 CA
19839662 GGATCGACAA
Statistics
Matches: 304, Mismatches: 66, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 55 0.18
159 242 0.80
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (159 bp):
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCA
CGCAGAGGGGGACCAGGCTGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCG
CACACTCATTTCGTGGGTTGGCTTAGGCG
Found at i:19839809 original size:26 final size:26
Alignment explanation
Indices: 19839773--19839827 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 26
19839763 TGGGTTGACT
19839773 TAAGCATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACGGAGTTCATTCCC-AGTC
19839799 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19839825 TAA
1 TAA
19839828 AATCTAACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19839863 original size:684 final size:686
Alignment explanation
Indices: 19838379--19840076 Score: 1829
Period size: 684 Copynumber: 2.5 Consensus size: 686
19838369 GTCTGCATGT
* * * *
19838379 TCATTTCATGGGTTGACTTAGGTATACGGAGTTCATCCCTATTCTAAGCATACTGAGTTCATTCC
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCC
* * * * * * * *
19838444 TAGTCTAAGAT-TGGACCGGATCGAGGGTTGCGGTAGTAGGATCTGCAGCACGCAGAGGTGACCG
66 CAGTCTAAGATCT-AACTGGATCGAGGGTTGC-GCAGTAGGATCGGTAGCACGCAGGGGGGACCG
* *
19838508 GACCGATCCCCGGCATGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTG
129 G-CCGAT-CCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTG
* *
19838573 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGA------CGGCAA
192 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAA
* * * * *
19838632 CGAGACCGGCAGTACGCAGAGGGGGATAGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGC
257 CGGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCC-GCTTGCGCATTATGCCTCTCCGAC
* * * ** ** * *
19838697 CAGCTCAACGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTA
321 CAGCTCAACACCCGAACACTCATTTCATGGGCAGACTTAGGCATACGGAGTTCATTCCCAATCTA
* * * * * *
19838762 ATATCGGACTGGACTGAGGGTTGTGGTAGTAGGACCAACAGCAGGATTGGCAGCACGTAGGGGGG
386 AGATCAGACCGGACTGAGGGTTGCGGTAGCAGGACCAACAGC--GA---GCAGCAC--AGAGGGG
* * * * *
19838827 ACCGGGTCGATCCCCGGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGCATCCACACGCTCGTT
444 ACCAGGTCAATCCCCGGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGCACCCACACACTCATT
* * * * * **
19838892 TTACGGGTTGGCTAAGGCATACGCAATTCATTCCATGCCGAAGCCCTAGCTGGACCGTGGGTTGT
509 TCACGGGTTGGCTAAGGCATACGCAATTCATTCCATGCCGAAGACCTAGATAGACCGAGGGTTAC
* * ** * * * * *
19838957 GGTAGTAGGACCGATAGTGGGATCGATAGTACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCG
574 GGCAGTAGGACCGACAGCAGGATCGACAG-ACACACAGGGGGATCAGGCTGATCCCCAGCTTGCG
** * * ** *
19839022 CATTATGCCTCTTCGGTCGGCCTCTTCGGTCAGCTGAGCACCTGCACAC
638 CATTATGCCTCTTCGACCGGCCCCTCCGACCAGCTGAGCACCCGCACAC
* * * *
19839071 TCGTTTCGTGGGTTGAGTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA-TCC
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCC
*
19839135 TCAGTCTAAGATCGGAA-TGGATCGAGGGTTGCGACAGTAGGATCGGTAGCACGCAGGGGGGACC
66 -CAGTCTAAGATC-TAACTGGATCGAGGGTTGCG-CAGTAGGATCGGTAGCACGCAGGGGGGACC
* * * *
19839199 AAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCATGCCCGTTTCGT
128 -GGCCGATCC-CGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGT
* * **
19839264 GGGTTGGCTTAGGCGTAGGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCA
191 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCA
* *
19839329 ACGGGACCGGCAGCACGCAGAGGGGGATCGGGCTGATCCTCGACTTGCGCATTATGCCTCTCCGA
256 ACGGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCG-CTTGCGCATTATGCCTCTCCGA
* * * * *
19839394 CCGGCTCAGCACTCGAACACTCATTTCGTGGGCCAG-CTTAGGCGTACGGAGTTCATTCCCAATC
320 CCAGCTCAACACCCGAACACTCATTTCATGGG-CAGACTTAGGCATACGGAGTTCATTCCCAATC
* *
19839458 TAAGATCAGACCGGA-TCGAGGGTTGCGGTAGCAGGATCGACAGC-A-C-GCA-AGAGGGGACCA
384 TAAGATCAGACCGGACT-GAGGGTTGCGGTAGCAGGACCAACAGCGAGCAGCACAGAGGGGACCA
* * * * *
19839518 GGTCAAT-CCCTGGCTTGCGCATTTTGCCTCTCTG-GTCGGTTGAGCACCCGCACACTCATTTCA
448 GGTCAATCCCCGGGCTTGCGCATTCTGCCTCTCCGACT-GGTTGAGCACCCACACACTCATTTCA
* * * * * * * * *
19839581 TGGGTTGGCTTAGGGATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCAGACTGAGGGTTACG
512 CGGGTTGGCTAAGGCATACGCAATTCATT-CCATGCCGAAGACCTAGAT-AGACCGAGGGTTACG
19839644 GCAGTAGGACC-AGCAGCAGGATCGACA-ACACACAGGGGGATCAGGCTGATCCCCAGCTTGCGC
575 GCAGTAGGACCGA-CAGCAGGATCGACAGACACACAGGGGGATCAGGCTGATCCCCAGCTTGCGC
* *
19839707 ATTCTGCCTCTTCGACCGGCCCCTCCGACC-GACTGAGCGCCCGCACAC
639 ATTATGCCTCTTCGACCGGCCCCTCCGACCAG-CTGAGCACCCGCACAC
* *
19839755 TCATTTTGTGGGTTGACTTAAGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCC
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCC
* * * * *
19839820 CAGTCTAAAATCTAACTAGATTGAGGGTTGCTGCAGCAGGATCGATAGCACGCAGGGGGGACCGG
66 CAGTCTAAGATCTAACTGGATCGAGGGTTGC-GCAGTAGGATCGGTAGCACGCAGGGGGGACC-G
* * * * * * * * * *
19839885 GCTGATCCCCAGCTTGGGCGTTATGCCTCTCTGGCTGGCTGAGCGCCTGCACACCCGTTTCGTGG
129 GCCGATCCCGA-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGG
* **
19839950 GTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGT
193 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAAC
* * * * *
19840015 GGGACCGACAGCACACAGAGGGGGACCGAGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCG
258 GGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCC-GCTTGCGCATTATGCCTCTCCG
19840077 GTCGACTGAG
Statistics
Matches: 838, Mismatches: 143, Indels: 58
0.81 0.14 0.06
Matches are distributed among these distances:
683 5 0.01
684 336 0.40
685 10 0.01
686 105 0.13
687 18 0.02
690 3 0.00
691 7 0.01
692 205 0.24
693 2 0.00
695 1 0.00
697 2 0.00
698 143 0.17
699 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (686 bp):
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCTAACTGGATCGAGGGTTGCGCAGTAGGATCGGTAGCACGCAGGGGGGACCGGC
CGATCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAACGGG
ACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGCTTGCGCATTATGCCTCTCCGACCAGCT
CAACACCCGAACACTCATTTCATGGGCAGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATC
AGACCGGACTGAGGGTTGCGGTAGCAGGACCAACAGCGAGCAGCACAGAGGGGACCAGGTCAATC
CCCGGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGCACCCACACACTCATTTCACGGGTTGGC
TAAGGCATACGCAATTCATTCCATGCCGAAGACCTAGATAGACCGAGGGTTACGGCAGTAGGACC
GACAGCAGGATCGACAGACACACAGGGGGATCAGGCTGATCCCCAGCTTGCGCATTATGCCTCTT
CGACCGGCCCCTCCGACCAGCTGAGCACCCGCACAC
Found at i:19840148 original size:26 final size:26
Alignment explanation
Indices: 19840119--19840171 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19840109 GTTGGCTTAG
19840119 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
19840145 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19840171 G
1 G
19840172 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19841342 original size:157 final size:156
Alignment explanation
Indices: 19840869--19842031 Score: 611
Period size: 159 Copynumber: 7.2 Consensus size: 156
19840859 CCCAGCCTAA
* * * * *
19840869 GCATACGGAGTTCATTCC-CGATCTAAAATTGGACCGGACCGAGGATTGCGATAGCAGGATCGGT
1 GCATACGGAGTTCATTCCAAG-TCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGGT
* * * * *
19840933 AGCACGCAGGGGGGAACCAGCCGATCCCTGACTTGCACATTCTGCCTCTCCAGTCGGCTGAGCGC
65 AGCACGCAGGGGGG-ATCGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGC
* *
19840998 CTGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ***** * * * ** *
19841027 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCTAGGGTTGTGGTAGTGGGACCGGTA
1 GCATACGGAGTTCATTCCAAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGGTA
* * * * * * *
19841092 ACACGCAGAGGGGGATCGGATCGATCCCCGACTTGCGCATTATGCATCTTCGACTGGCTCAGTGC
66 GCACGCAG-GGGGGATCGG-TCGATCCCCGACTTGCGCATTCTGCCTCTCCGTC-GGCTGAGCGC
*
19841157 CCGCACGCTCGTTTCGTGGGTTGACTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
19841186 GCATACGGAGTTCATTCCAAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGGTA
* * * * * *
19841251 GCACGTAGGGGGGATCGGTCGGTCCCCGGCTTGCGCATTCTACCTCTCCGTTCGGTTGAGCACCC
66 GCACGCAGGGGGGATCGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCGCCC
* *
19841316 GCACACTCGTTTCATGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
* * *** * * * *
19841343 GCATACGGAGTTCATTCTAAGTCTAAGCCCCAGCTGGATCAAGGGTTGTGGCAACATTACCAGTA
1 GCATACGGAGTTCATTCCAAGTCTAAG----A-TTGGATC--GGACCGAGG----GTT-GCGGTA
* * * * * * * *
19841408 GCGGGATCGGTAGCACGCAGAGAGGGACCAAG-CTGATCCCTGGCTTGCACATTATGCCTCTCCG
54 GCAGGATCGGTAGCACGCAG-GGGGGATC-GGTC-GATCCCCGACTTGCGCATTCTGCCTCTCCG
* * * * *
19841472 ATCGACTGAGC-ACCGGACACTCGTTTCGTGGGTTGACTTAG
116 -TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
19841513 GCATACGGACTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATGAGGG
1 GCATACGGAGTTCATTCCAAGTCTAAG-AT-T-G-G---A-T--C-G-----GA-C---CGAGGG
* * ** * *
19841578 TTGCGGCAGCAGAATCGGTAGCATACA-GGGGGA-CAGAGCCGATCCCCCG-CTTGCGTATTCTG
46 TTGCGGTAGCAGGATCGGTAGCACGCAGGGGGGATC-G-GTCGAT-CCCCGACTTGCGCATTCTG
* * * *
19841640 CCTCTCCGACCGGCTGAGTGCCCGCACAC-CTGTTTCGTGGGTAGGCTTAG
108 CCTCTCCG-TCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* **** * ** ** * * * * **
19841690 GCATAGGGAGTTCATTCCAAGTCTAAG-CCCCAGCCAAACCGACAGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATTGGA-TCGGACCGAGGGTTGCGGTAGCAGGATCGGT
* * ** * * * * *
19841754 AGCACGCAGAGGGGGACCGGGCCGATCGTCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAACG
65 AGCACGCAG-GGGGGATC-GGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCG
* * *
19841819 CCCGAACGCTCATTTCGTGGGTTGACTTA-
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
19841848 GCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CCGGACTGAGGGTTGCGGTAGAAGGATCGAT
1 GCATACGGAGTTCATTCCAAGTCTAAGAT-TGGATCGGACCGAGGGTTGCGGTAGCAGGATCGGT
* ** * ** * * * *
19841912 AGCACGCA-GGGGGATCGGGCTTTTCCATAGCTTGCGCATTCTACCTCTCCGGCCGGTTGAACGC
65 AGCACGCAGGGGGGATCGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGC
*
19841976 CCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
19842005 GCATACGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCAAGTCTAAG
19842032 CAGACGGAGT
Statistics
Matches: 752, Mismatches: 200, Indels: 107
0.71 0.19 0.10
Matches are distributed among these distances:
155 4 0.01
156 59 0.08
157 130 0.17
158 125 0.17
159 178 0.24
160 5 0.01
161 2 0.00
162 6 0.01
164 5 0.01
167 4 0.01
168 3 0.00
169 21 0.03
170 56 0.07
171 34 0.05
172 1 0.00
173 1 0.00
174 2 0.00
175 3 0.00
176 36 0.05
177 52 0.07
178 18 0.02
179 3 0.00
183 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGGTA
GCACGCAGGGGGGATCGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19841552 original size:26 final size:26
Alignment explanation
Indices: 19841513--19841565 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19841503 GTTGACTTAG
19841513 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* * *
19841539 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
19841565 G
1 G
19841566 ATCGGATGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:19842237 original size:26 final size:26
Alignment explanation
Indices: 19842201--19842250 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19842191 GTTGACTTAG
19842201 GCATACAGAGTTCATCCCCAGTCTGA
1 GCATACAGAGTTCATCCCCAGTCTGA
* *
19842227 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
19842251 AAGATCTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTGA
Found at i:19842589 original size:159 final size:158
Alignment explanation
Indices: 19842227--19842612 Score: 384
Period size: 159 Copynumber: 2.4 Consensus size: 158
19842217 CCCAGTCTGA
* * * *
19842227 GCATACGGAGTTCATTCCCAGTCTAAGATCTAACCGAACTGAGGGTTGCAGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGGGTTGCAGCAGCAAGATCGACA
* * * *
19842292 GCACGCAAGGGGGACCGAACCGATCCCCGACTTACGCATTTTGCCTCTTTGGCCGGTTGAGTGCC
66 GCACGCAAGGGGGACCGAACCGATCCCCGACTTACGCATTATGACTCTCTGGCCGGTTGAGCGCC
* * *
19842357 CGCATGCCCATTTCATGGGTTGGCTTAG
131 CGCACGCCCATTTCATGAGTTGACTTAG
* ** * * ** * *
19842385 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCCG-TCAGACCGAGGGTTGTGGTAGCAGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCTGATCGGACCGAGGGTTGCAGCAGCAAGATC-G
* * * ** * *
19842447 GCAGCATGCAGAGGGGGACTGGGCCGATCCCCGACTTGCGCATTATGACTCTCTGGCTGGCTT-A
63 ACAGCACGCA-AGGGGGACCGAACCGATCCCCGACTTACGCATTATGACTCTCTGGCCGG-TTGA
* * *
19842511 GCGCCCGCACGCTCGTTTCGTGAGTTGACTTAG
126 GCGCCCGCACGCCCATTTCATGAGTTGACTTAG
* * * * *
19842544 GCATACAGAGTTCATTCCCAGTCTAAGATCTGATCGGACCAAGGGTTGCAACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGGGTTGCAGCAGCAAGATCGACA
19842609 GCAC
66 GCAC
19842613 ATAGGGGGGA
Statistics
Matches: 176, Mismatches: 44, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 51 0.29
159 115 0.65
160 6 0.03
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGGGTTGCAGCAGCAAGATCGACA
GCACGCAAGGGGGACCGAACCGATCCCCGACTTACGCATTATGACTCTCTGGCCGGTTGAGCGCC
CGCACGCCCATTTCATGAGTTGACTTAG
Found at i:19842734 original size:26 final size:26
Alignment explanation
Indices: 19842704--19842754 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19842694 TGGCTTAGGT
*
19842704 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
19842730 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19842755 ATCATACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:19843106 original size:26 final size:26
Alignment explanation
Indices: 19843070--19843128 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
19843060 GTTGACTTAG
19843070 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
19843096 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19843122 -CAT-CAGA
1 GCATACAGA
19843129 CCGGACCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 24 0.80
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19843621 original size:26 final size:26
Alignment explanation
Indices: 19843571--19843623 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19843561 GTTGCCTTAG
*
19843571 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
19843597 GCATATGGAGTTCATTCTCA-ATCTAA
1 GCATACGGAGTTCATTC-CATATCTAA
19843623 G
1 G
19843624 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:19844218 original size:11 final size:11
Alignment explanation
Indices: 19844202--19844228 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
19844192 GCCAAGGCAC
19844202 CATCGTCGGAG
1 CATCGTCGGAG
19844213 CATCGTCGGAG
1 CATCGTCGGAG
19844224 CATCG
1 CATCG
19844229 CCGAAGAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:19845251 original size:159 final size:158
Alignment explanation
Indices: 19844838--19845331 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 158
19844828 CCCAGTCTAA
* * *
19844838 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGAGTTGCGGTAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCAATA
* * * * *
19844903 GCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTAAGCGCC
* * * * *
19844968 CGTATGCCCGTTTCATGGGTTGGCTTAA
131 CGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * * * *
19844996 CCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGATGTGGCAGCGGGACCCA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGCGGTAGCAGGATCAA
* * * * * * * * *
19845059 TAGCACGCAGAGGGGGATCGGGCTGGTCCCCGACTTGCGCATTATGCATTTTCGGCCGGCTCAGC
64 TAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTAAGC
** *
19845124 GCCCGAACGCTTATTTCGTGGGTTGACTTAG
128 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
19845155 GCATACGGAGTTCATTCCCAGTGTAAGATTGGATTGGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCAATA
* * *
19845220 GCACACAGGGAGGGACCGGGCCGATCCCCGACTTGTGCATTCA-GCCTCTCCGATCGACTAAGCG
66 GCACGCAGGG-GGGACCGGGCCGATCCCCGACTTGCGCATT-ATGCCTCTCCGACCGACTAAGCG
* * *
19845284 CCCGCACGCTCGTTTTGTCGGTTGGCTTAG
129 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
*
19845314 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
19845332 ATATCTAAGC
Statistics
Matches: 259, Mismatches: 70, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
157 5 0.02
158 53 0.20
159 196 0.76
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCAATA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTAAGCGCC
CGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19845549 original size:196 final size:197
Alignment explanation
Indices: 19845207--19845563 Score: 475
Period size: 196 Copynumber: 1.8 Consensus size: 197
19845197 GGGTTGCGGT
*
19845207 AGCAGGATCGACAGCACACAGGGAGGGACCGGGCCGATCCCCGACTTGTGCATTCAGCCTCTCCG
1 AGCAGGATCGACAGCACACAGGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCAGCCTCTCCG
* * * * * * *
19845272 ATCGACTAAGCGCCCGCACGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATATC
66 ACCGACTAAGCGCCCGCACACTCATTTCGTCGGTTGACTTAGGCATATGGAGTTAATCCCATATC
**
19845337 TAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCAATAGTAAGACCA
131 TAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCAATAGTAAGACCA
19845402 GC
196 GC
* * * * * * *
19845404 AGCAGGATCGACAGCACGCAGGG-GGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCG
1 AGCAGGATCGACAGCACACAGGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCAGCCTCTCCG
* * * * * *
19845468 GCCGGCTGAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATATGGAGTTAATCCCCA-GT
66 ACCGACTAAGCGCCCGCACACTCATTTCGTCGGTTGACTTAGGCATATGGAGTTAAT-CCCATAT
*
19845532 CTAAGCATACAGAGTTCATTCCTAGTCTAAGA
130 CTAAGCATACAGAGTTCATTCCCAGTCTAAGA
19845564 GCTAATCGGA
Statistics
Matches: 135, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
196 110 0.81
197 25 0.19
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (197 bp):
AGCAGGATCGACAGCACACAGGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCAGCCTCTCCG
ACCGACTAAGCGCCCGCACACTCATTTCGTCGGTTGACTTAGGCATATGGAGTTAATCCCATATC
TAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCAATAGTAAGACCA
GC
Found at i:19845825 original size:159 final size:158
Alignment explanation
Indices: 19845577--19845871 Score: 387
Period size: 159 Copynumber: 1.9 Consensus size: 158
19845567 AATCGGACTG
* * * * *
19845577 AGGTTGTGGTAGCAGGATCAGCAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCGCATTCT
1 AGGTTGTGGCAGCAGGATCAGCAGCACGCAAAGGGGACCAGGCTGATCCCAGACTTGCCCATTCT
* ** * *
19845642 ACCTTTCTGGCCGACTGAGTGCCCGCACACCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTAA
66 ACCTCTCCAGCCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAA
19845707 TTCCATATCTAAGCCCTAGCTGAACCGA
131 TTCCATATCTAAGCCCTAGCTGAACCGA
* *
19845735 AGGTTGTGGCAGCGGGATC-GACAGCACGCAAAGGTGGACTAGGCTGATCCTCAG-CTTGCCCAT
1 AGGTTGTGGCAGCAGGATCAG-CAGCACGCAAAGG-GGACCAGGCTGATCC-CAGACTTGCCCAT
* * * * *
19845798 TCTGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGT
63 TCTACCTCTCCAGCCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
*
19845863 TCATTCCAT
128 TAATTCCAT
19845872 GTGCATTGTA
Statistics
Matches: 116, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
157 1 0.01
158 29 0.25
159 84 0.72
160 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGGTTGTGGCAGCAGGATCAGCAGCACGCAAAGGGGACCAGGCTGATCCCAGACTTGCCCATTCT
ACCTCTCCAGCCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAA
TTCCATATCTAAGCCCTAGCTGAACCGA
Found at i:19846061 original size:26 final size:26
Alignment explanation
Indices: 19846031--19846083 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19846021 GTTGACTTAG
19846031 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
19846057 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19846083 G
1 G
19846084 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19846345 original size:158 final size:158
Alignment explanation
Indices: 19846057--19846559 Score: 543
Period size: 158 Copynumber: 3.2 Consensus size: 158
19846047 CCCAGTCTAA
* *
19846057 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGA-CGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * ***
19846120 CAGCATGCA-AGGGGGACCGGGTTGATCCTTGGCTTACACATTCTGCCTCTCCGGTTGGCTGAGT
64 CAGCATGCAGAGGGGGATCGGGTCGATCC-CGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGT
*
19846184 GCCCGCACGCACATTTTGTGGGTTGGCTTAG
128 GCCCGCACGCTCATTTTGTGGGTTGGCTTAG
* * * * * * * *
19846215 GCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
19846280 GCATGCAGAGGGGGATCGGGTCGATCCCGGCTTGCGCATTATGCCTCTCCGCCCGGCTCAGTGCC
66 GCATGCAGAGGGGGATCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
* *
19846345 CGCACGCTCATTTTGTGGGATGACTTAG
131 CGCACGCTCATTTTGTGGGTTGGCTTAG
* * * *
19846373 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGACTGGACCGAGTGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGAC-GGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
19846436 CAGCACGTAG-GGGCGATCGAGTCGGA-CCCAGACTTGCGTATTCTGCCTCTCCGACCAGCTGAG
64 CAGCATGCAGAGGGGGATCGGGTC-GATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * *
19846499 TGCCCGCATGCTTATTTCGTGGGTTGGCTTAG
127 TGCCCGCACGCTCATTTTGTGGGTTGGCTTAG
*
19846531 GCATACGGAGTTAATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
19846560 TATGGAGTTC
Statistics
Matches: 285, Mismatches: 51, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
157 23 0.08
158 238 0.84
159 24 0.08
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGAGGGGGATCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
CGCACGCTCATTTTGTGGGTTGGCTTAG
Found at i:19846560 original size:26 final size:26
Alignment explanation
Indices: 19846531--19846583 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19846521 GTTGGCTTAG
19846531 GCATACGGAGTTAATTCC-ATGTCTAA
1 GCATACGGAGTTAATTCCTA-GTCTAA
* *
19846557 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCTAGTCTAA
19846583 G
1 G
19846584 ATTGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCTAGTCTAA
Found at i:19847055 original size:158 final size:155
Alignment explanation
Indices: 19846642--19847071 Score: 533
Period size: 159 Copynumber: 2.7 Consensus size: 155
19846632 CTGCACACAG
* * *
19846642 GGGGGACCGGGCTGATCCCCGGCTTGCGCATTTTGCCTCTCTGGCTGGCTGACTGCCCACACGCA
1 GGGGGACCGGGCCGAT-CCCGGCTTGCGCATTTTGCCTCTCTGGCTGGCTGACTACCCGCACGCA
* *
19846707 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAGTCGGACCGAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATA-AGAGTTCATTCCATGTCTAAGCCACAGTCGGACCGAGGG
* *
19846772 TTGTGGCAACGGGACCGGCAGCACGCA
129 TTGTGGCAACAGGACCGACAGCACGCA
* * * *
19846799 GAAGGGGATCGGGCCAATCCCTGGATTGCCCATTCTT-CCTCTCTGGCTGGCTGACTACCCGCAC
1 G--GGGGACCGGGCCGATCCC-GGCTTGCGCATT-TTGCCTCTCTGGCTGGCTGACTACCCGCAC
* * *
19846863 GCACGTTTCGTGGGTTGGGTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGA
62 GCACGTTTCGTGGGTTGGCTTAGGCATAA-GAGTTCATTCCATGTCTAAGCCACAGTCGGACCGA
* * *
19846928 GGGTTGTGGCAGCAGGATCGACAGCACGTA
126 GGGTTGTGGCAACAGGACCGACAGCACGCA
* * *
19846958 GGGGCGACCGGGCCGATCCTCGGCTTACGCATTTTGCCTCT-TCGACCGGCTGAGC-ACCCGCAC
1 GGGG-GACCGGGCCGATCC-CGGCTTGCGCATTTTGCCTCTCT-GGCTGGCTGA-CTACCCGCAC
* *
19847021 GCTCGTTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
62 GCACGTTTCGTGGGTTGGCTTAGGCATA-AGAGTTCATTCCATGTCTAAGC
19847072 ATACAAAGTT
Statistics
Matches: 235, Mismatches: 27, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
157 7 0.03
158 91 0.39
159 135 0.57
160 2 0.01
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (155 bp):
GGGGGACCGGGCCGATCCCGGCTTGCGCATTTTGCCTCTCTGGCTGGCTGACTACCCGCACGCAC
GTTTCGTGGGTTGGCTTAGGCATAAGAGTTCATTCCATGTCTAAGCCACAGTCGGACCGAGGGTT
GTGGCAACAGGACCGACAGCACGCA
Found at i:19847153 original size:513 final size:509
Alignment explanation
Indices: 19846009--19847153 Score: 1325
Period size: 513 Copynumber: 2.3 Consensus size: 509
19845999 CATCCATACA
* * * *
19846009 CTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATT
1 CTCATTTCGTGCGTTGGCTTAGGCATACG-AGTTCAT-TCCATGTCTAAGCATATGGAGTTCATT
* *
19846073 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-G--ACA-G--CA-TG--CA
64 CCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCAGTGCACA
* ** * * *
19846129 -AGGGGGACCGGGTTGATCCTTGGCTTACACATTCTGCCTCTCCGGTTGGCTGAGTGCCCGCACG
129 CAGGGGGACCGGGCTGATCCCCGGCTTACACATTCTGCCTCTCCGGCTGGCTGACTGCCCACACG
** *
19846193 CACATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCGGACCAAG
194 CACATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCACAGTCGGACCAAG
* * * * * * *
19846258 GGTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGATCGGGTCGATCCCGGCTTGCGCATTATG
259 GGTTGTGGCAACGGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCCGGATTGCCCATTATG
* * * *
19846323 CCTCTCCGCCCGGCTCAGTGCCCGCACGCTCATTTTGTGGGATGACTTAGGCATACAGAGTTCAT
324 CCTCTCCGCCCGGCTCACTACCCGCACGCACATTTCGTGGGATGACTTAGGCATACAGAGTTCAT
* * * *
19846388 TCCCAGTCTAAGATCGGACTGGACCGAGTGTTGCGGCAGCAGGATCGACAGCACGTAGGGGCGAT
389 TCCCAGTCTAAGACCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGCGAC
* * * * ** *
19846453 CGAGTCGGACCCAGACTTGCGTATTCTGCCTCTCCGACCAGCTGAGTGCCCGCATG
454 CGAGGCCGACCCAGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACG
* * *
19846509 CTTATTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATGGAGTTCATTC
1 CTCATTTCGTGCGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTC
* * * * * *
19846574 CTAGTCTAAGAT-TGAATCGGATCGAGGGTTGCGGCAGCAGGACCAGCAGCAGCATCGGCTGCAC
65 CCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCAG-TGCAC
* * * *
19846638 ACAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTTTGCCTCTCTGGCTGGCTGACTGCCCACA
128 ACA-GGGGGACCGGGCTGATCCCCGGCTTACACATTCTGCCTCTCCGGCTGGCTGACTGCCCACA
* * *
19846703 CGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAGTCGGACCG
192 CGCACATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCACAGTCGGACCA
*
19846768 AGGGTTGTGGCAACGGGACCGGCAGCACGCAGAAGGGGATCGGGCCAATCCCTGGATTGCCCATT
257 AGGGTTGTGGCAACGGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCC-GGATTGCCCATT
* * * * * * * * **
19846833 CTTCCTCTCTGGCTGGCTGACTACCCGCACGCACGTTTCGTGGGTTGGGTTAGGCATA-AGGAGT
321 ATGCCTCTCCGCCCGGCTCACTACCCGCACGCACATTTCGTGGGATGACTTAGGCATACA-GAGT
* * * *
19846897 TCATT-CCATGTCTAAGCCCCAGTC-GGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGG
385 TCATTCCCA-GTCTAAG-ACCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGG
* * * *
19846960 GGCGACCG-GGCCGATCCTC-GGCTTACGCATTTTGCCTCTTCGACCGGCTGAGCACCCGCACG
448 GGCGACCGAGGCCGA-CC-CAGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACG
* ***
19847022 CTCGTTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTC
1 CTCATTTCGTGCGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTC
* * * *
19847087 CCAGTGTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGACCAGCAACAGGATCAGTAGCACA
65 CCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCAGT-GCACA
19847152 CA
129 CA
19847154 AAGCGGCAGT
Statistics
Matches: 534, Mismatches: 88, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
499 4 0.01
500 91 0.17
501 2 0.00
503 2 0.00
506 1 0.00
508 2 0.00
510 2 0.00
511 1 0.00
512 165 0.31
513 259 0.49
514 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (509 bp):
CTCATTTCGTGCGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCC
CAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCAGTGCACACA
GGGGGACCGGGCTGATCCCCGGCTTACACATTCTGCCTCTCCGGCTGGCTGACTGCCCACACGCA
CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCACAGTCGGACCAAGGG
TTGTGGCAACGGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCCGGATTGCCCATTATGCC
TCTCCGCCCGGCTCACTACCCGCACGCACATTTCGTGGGATGACTTAGGCATACAGAGTTCATTC
CCAGTCTAAGACCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGCGACCG
AGGCCGACCCAGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACG
Found at i:19847409 original size:26 final size:26
Alignment explanation
Indices: 19847359--19847411 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19847349 GTTGGCTTAG
***
19847359 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19847385 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19847411 G
1 G
19847412 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19847656 original size:26 final size:26
Alignment explanation
Indices: 19847619--19847671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19847609 GTTGGCTTAG
19847619 GCATACAAAGTTCATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
*
19847645 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
19847671 G
1 G
19847672 ATTGGACCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:19847864 original size:26 final size:26
Alignment explanation
Indices: 19847828--19847880 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19847818 GTTGACTTAG
19847828 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
19847854 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19847880 G
1 G
19847881 ATCGACTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19848431 original size:13 final size:12
Alignment explanation
Indices: 19848396--19848427 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
19848386 GTGCTAGTAC
*
19848396 TTGGCCCTTATA
1 TTGGCCCCTATA
19848408 TTGGCCCCTATA
1 TTGGCCCCTATA
19848420 TTGGCCCC
1 TTGGCCCC
19848428 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:19848452 original size:25 final size:25
Alignment explanation
Indices: 19848424--19848473 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
19848414 CCTATATTGG
19848424 CCCCCTATCCCTCATCAAACCTCGA
1 CCCCCTATCCCTCATCAAACCTCGA
19848449 CCCCCTATCCCTCATCAAACCTCGA
1 CCCCCTATCCCTCATCAAACCTCGA
19848474 GAACTCACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.52, G:0.04, T:0.20
Consensus pattern (25 bp):
CCCCCTATCCCTCATCAAACCTCGA
Found at i:19849316 original size:159 final size:158
Alignment explanation
Indices: 19848954--19849318 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 158
19848944 CCTAGTCTAA
* * * * *
19848954 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGACCGACA
** * * * *
19849019 GCACGCAGGGGGGAGTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCCGAGCACC
66 GCACGCAGGGGGGACAGGGCTGATCCCCGACTTACGCATTATGCCTCTCCGACCAGCCGAGCACC
* * *
19849084 CGCATGCCTGTTTCATGGGTTGGCTTAG
131 CGCACGCATGTTTCATGGGTTGACTTAG
* ** * *
19849112 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGT-GGCACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGTAGG-ACCG
* * * *
19849174 GCAGCATGCAGAGGGGGACCAGGTC-GATCCTCGACTTACGCATTATGCCTCTCC-AGCCAGCTC
63 ACAGCACGCAG-GGGGGA-CAGGGCTGATCCCCGACTTACGCATTATGCCTCTCCGA-CCAGC-C
** *
19849237 -AGTGCCCGCACGCATGTTTTATGGGTTGACTTAG
124 GAGCACCCGCACGCATGTTTCATGGGTTGACTTAG
* *
19849271 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
19849319 CAGCAGTAAG
Statistics
Matches: 167, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
157 5 0.03
158 54 0.32
159 101 0.60
160 7 0.04
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGACCGACA
GCACGCAGGGGGGACAGGGCTGATCCCCGACTTACGCATTATGCCTCTCCGACCAGCCGAGCACC
CGCACGCATGTTTCATGGGTTGACTTAG
Found at i:19849481 original size:26 final size:26
Alignment explanation
Indices: 19849430--19849482 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19849420 GTTGGCTTTG
* *
19849430 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
19849456 GCATACAGAGTTCATTCC-TAGCCTAA
1 GCATACAGAGTTCATTCCAT-GCCTAA
19849482 G
1 G
19849483 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:19850284 original size:158 final size:156
Alignment explanation
Indices: 19849846--19850336 Score: 457
Period size: 158 Copynumber: 3.1 Consensus size: 156
19849836 GCATACAAAA
* * * * *
19849846 TTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGTAGCATGCAGG
1 TTCATT-CCATGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGG
* * * * * * * *
19849910 GGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGTCTCTCCAGTCGGCTGAGTGCCCGCACACCC
65 GGGGA-CGGACCGATCCC-AGCTTGCGCATTCTGCCTCTTCAGTCGGCTGAGCGCCCGTACACTC
*
19849975 GTTTCGTGGGTTGGCTTAGGCATAGGGAG
128 GTTTCGTGGGTTGGCTTAGGCATACGGAG
* ** * ** * * **
19850004 TTCATTCCATGTCTAAG-CCCCAGTCGGATTGAGGGTTGTGGCAGCGGGACCGGCAGCACATAGA
1 TTCATTCCATGTCTAAGATCGGACT-GGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-
* * * ** * *
19850068 GGGGGACCGAGCCGATCTCAGCTTGCGCATTATGCCTCTTCAGTTAGCTCAACGCCCGTACACTC
64 GGGGGACGGA-CCGATCCCAGCTTGCGCATTCTGCCTCTTCAGTCGGCTGAGCGCCCGTACACTC
* * ** *
19850133 GTTACATGGGTTTACTTAAGCATACGGAG
128 GTTTCGTGGGTTGGCTTAGGCATACGGAG
* *
19850162 TTCATTCCCA-GTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGCAGG
1 TTCATT-CCATGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGG
* * * * * *
19850226 GGGGATCGGATCGGTCCCCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCACCCGTACACTC
65 GGGGA-CGGACCGATCCCAG-CTTGCGCATTCTGCCTCTTCAGTCGGCTGAGCGCCCGTACACTC
* *
19850291 ATTTCGTGGGTTGGCTTAGGCATACAGAG
128 GTTTCGTGGGTTGGCTTAGGCATACGGAG
*
19850320 TTAATTCCATGTCTAAG
1 TTCATTCCATGTCTAAG
19850337 CATTTGGAGT
Statistics
Matches: 255, Mismatches: 69, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 20 0.08
158 217 0.85
159 18 0.07
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
TTCATTCCATGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGG
GGGACGGACCGATCCCAGCTTGCGCATTCTGCCTCTTCAGTCGGCTGAGCGCCCGTACACTCGTT
TCGTGGGTTGGCTTAGGCATACGGAG
Found at i:19850547 original size:26 final size:26
Alignment explanation
Indices: 19850510--19850562 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19850500 GTTGAGTTAT
*
19850510 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATATGAAGTTCATTCCC-AGTCTAA
19850536 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
19850562 G
1 G
19850563 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:19850900 original size:159 final size:159
Alignment explanation
Indices: 19850596--19851033 Score: 357
Period size: 159 Copynumber: 2.8 Consensus size: 159
19850586 ACACTTGGAT
** * ** * *
19850596 CGACAGCACATAG-GGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTG
1 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTC
* * * *
19850660 AGCACCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCC
66 AGCACCCGAATGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAACACCC
* *
19850725 AGCCAAACCGAGGGTTGTGGCAGCGGGAC
131 AGCCAAACCGAAGGTTGTGGCAGCAGGAC
* * * *
19850754 CGATAGCACGCAGAGGGGGACCGTGCCGATCCCTGGCTTGCACATTATGCCTCTCCGGCC-AGCT
1 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGA-CT
* ** * *
19850818 CAGCCCCCGAATGCTTGTTTCATGGGTTGATTTAGGCATACGGAGTTTATTCCCA-GTCTAACA-
65 CAGCACCCGAATGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAACAC
* ** * * *
19850881 TCAGACCGGACTGAAGGTTGTGGTAGCAGGAT
129 CCAG-CCAAACCGAAGGTTGTGGCAGCAGGAC
* ** ** * * * * * * *
19850913 CGACAGCACG-TG-GTGGGGACTAGGTTGGTCCCTGGCTTGCACATTCTACATCTTCGATCGACT
1 CGACAGCACGCAGAG-GGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACT
* * * * * * * * *
19850976 AAGCGCCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACGGAGTTAATTCCATGTC
65 CAGCACCCGAATGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTC
19851034 AAAGCATATG
Statistics
Matches: 221, Mismatches: 52, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 94 0.43
159 120 0.54
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTC
AGCACCCGAATGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAACACCC
AGCCAAACCGAAGGTTGTGGCAGCAGGAC
Found at i:19851543 original size:697 final size:698
Alignment explanation
Indices: 19849759--19851575 Score: 2111
Period size: 697 Copynumber: 2.6 Consensus size: 698
19849749 TCTTCGACCG
* * *
19849759 GCCTCTCCGGTCGACTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCA
1 GCCTCTCCGGCCGACTGAACGCC-GCACGCTCGTTTCGTGGGTTGACTTATGCATAAGGAGTTCA
* * * *
19849824 TCCCCAGTCTAAGCATACAAAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACA
65 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AACCAGACCGAGGGTTGCGACA
* ** * *
19849889 GCAGGATCGGTAGCATGCAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGTCTCTCC-AG
129 GTAGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-
* *
19849953 TCGGCTGAGTGC-CCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
193 CCGACTG-G-GCACCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * *
19850017 TAAGCCCCAGTCGGATTGAGGGTTGTGGCAGCGGGACCGGCAGCACATAGAGGGGGACCGAG-CC
256 TAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGACC-AGTCC
* * * * * * *
19850081 GAT-CTCAGCTTGCGCATTATGCCTCTTC-AGTTAGCTCAACGCCCGTACACTCGTTACATGGGT
320 GATCCTCGGCTTGCGCATTATGCCTCTCCGA-TCAGCTCAGCGCCCGAACGCTCGTTTCATGGGT
* * * * * *
19850144 TTACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAG
384 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACCGAAGGTTGTGGCAGCAG
* * * * * *
19850209 GATTGACAGCACGCAGGGGGGATCGGATCGGTCCCCGACTTGCGCATTCTACCTCTTCGGTCGGC
449 GATCGACAGCACGCAGGGGGGATAGGATCGGTCCCCGACTTGCACATTCTACATCTTCGATCGAC
* * * *
19850274 TGAGCACCCGTACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTAATTCCATGTCTAAGCA
514 TAAGCACCCGCACACTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTAATTCCATGTCAAAGCA
* * * * * ** * * *
19850339 TTTGGAGTTCATTCCCAGCATACGGAGCCCCAGCTGGACCGAGTGTTGTGGCAGCAGGATCGGCA
579 TATGGAGTTCATTCCCAGCATACAGAGCCCCAGCCGGACCAAGGGTTACGACAGCAGGACCAGCA
** * * **
19850404 GCTAGATCGGTAGCACGTAGAGGGGGACCGAGCTGATCCCCGGCTTATGCATTGT
644 GCTAGATCGACAACACGCAGAGGGGGACCGAGCTGATCCCCAACTTATGCATTGT
* * * * *
19850459 GCCTCTCCGACCGACTGAACACCCGTACGCTCGTTTCGTGGGTTGAGTTATGCATATGGAGTTCA
1 GCCTCTCCGGCCGACTGAAC-GCCGCACGCTCGTTTCGTGGGTTGACTTATGCATAAGGAGTTCA
* * **
19850524 TCCCTAGTCTAAGCATA-TGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTTGAC
65 TCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCA-ACCAGACCGAGGGTTGCGAC
* * *** *
19850588 ACTTGGATCGACAGCACATAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGA
128 AGTAGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * ** *
19850653 CCGACTGAGCACCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
193 CCGACTGGGCA-CCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * ** * * *
19850718 AAGACCCAGCCAAACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGACC-GTGCCG
257 AAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGACCAGT-CCG
* ** * * *
19850782 ATCC-CTGGCTTGCACATTATGCCTCTCCGGCCAGCTCAGCCCCCGAATGCTTGTTTCATGGGTT
321 ATCCTC-GGCTTGCGCATTATGCCTCTCCGATCAGCTCAGCGCCCGAACGCTCGTTTCATGGGTT
* * * *
19850846 GATTTAGGCATACGGAGTTTATTCCCAGTCTAACATCAGACCGGACTGAAGGTTGTGGTAGCAGG
385 GACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACCGAAGGTTGTGGCAGCAGG
* * * *
19850911 ATCGACAGCACG-TGGTGGGGACTAGG-TTGGTCCCTGGCTTGCACATTCTACATCTTCGATCGA
450 ATCGACAGCACGCAGG-GGGGA-TAGGATCGGTCCCCGACTTGCACATTCTACATCTTCGATCGA
* * * *
19850974 CTAAGCGCCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACGGAGTTAATTCCATGTCAAAGC
513 CTAAGCACCCGCACACTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTAATTCCATGTCAAAGC
* ** *
19851039 ATATGGAGTTCATTCCCAGTC-TA-AGA-TCGGA-CCGGACCAAGGGTTACGATAGCAGGACCAG
578 ATATGGAGTTCATTCCCAG-CATACAGAGCCCCAGCCGGACCAAGGGTTACGACAGCAGGACCAG
* * *
19851100 CAGC-AGGATCGACAACACGCAG-GGGGGATCGAGCTGATCCCCAACTTGTGCATTTT
642 CAGCTA-GATCGACAACACGCAGAGGGGGACCGAGCTGATCCCCAACTTATGCATTGT
* * *
19851156 GCCTCTCCGGCCGACTGAACGCTCGCACACTCGTTTTGTGGGTTGACTTAGGCATAAGGAGTTCA
1 GCCTCTCCGGCCGACTGAACGC-CGCACGCTCGTTTCGTGGGTTGACTTATGCATAAGGAGTTCA
* * *
19851221 TCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCTAATCAGACCGAGGGTTGCGGCA
65 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AACCAGACCGAGGGTTGCGACA
* * * * *
19851286 GTAAGATCAACAGCATGCAGGGGGGGCCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
129 GTAGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
*
19851351 CGATTGGGCACCTGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
194 CGACTGGGCACC-GCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * *
19851416 AGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACTGACAGCACACAGAGGTGGACCAGTCCAAT
258 AGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGACCAGTCCGAT
* * * * * * * * * *
19851481 CCTCGGCTTGTGCATTCTACCTCTCCGATCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC
323 CCTCGGCTTGCGCATTATGCCTCTCCGATCAGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGAC
* *
19851546 TTAGCCATAAGGAGTTCATT-CCATGTCTAA
388 TTAGGCATACGGAGTTCATTCCCA-GTCTAA
19851576 GCATACGGAG
Statistics
Matches: 926, Mismatches: 169, Indels: 47
0.81 0.15 0.04
Matches are distributed among these distances:
696 6 0.01
697 370 0.40
698 45 0.05
699 2 0.00
700 273 0.29
701 226 0.24
702 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (698 bp):
GCCTCTCCGGCCGACTGAACGCCGCACGCTCGTTTCGTGGGTTGACTTATGCATAAGGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAACCAGACCGAGGGTTGCGACAGT
AGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
ACTGGGCACCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGACCAGTCCGATCCT
CGGCTTGCGCATTATGCCTCTCCGATCAGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACCGAAGGTTGTGGCAGCAGGATCGAC
AGCACGCAGGGGGGATAGGATCGGTCCCCGACTTGCACATTCTACATCTTCGATCGACTAAGCAC
CCGCACACTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTAATTCCATGTCAAAGCATATGGAG
TTCATTCCCAGCATACAGAGCCCCAGCCGGACCAAGGGTTACGACAGCAGGACCAGCAGCTAGAT
CGACAACACGCAGAGGGGGACCGAGCTGATCCCCAACTTATGCATTGT
Found at i:19852583 original size:159 final size:158
Alignment explanation
Indices: 19852201--19852767 Score: 549
Period size: 158 Copynumber: 3.6 Consensus size: 158
19852191 GTTCGATCCG
* * * * * * * * *
19852201 CGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAGCGTCTGCATGCTCGTTTCATGGGTTAACTTA
1 CGGCTTGCACATTCTGCCTCTC-CGACGGCTAAGCGCCAGCACGCTCATTTCATGGGTTGACTTA
* * * * *
19852266 GGCATACGAAGTTCATTCCCAGTGTAAGATCGGACCAAATCAAGGGTTGTGGTAGTAGGATCGAC
65 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCAAGGGTTGTGGTAGCAGGATCGAT
*
19852331 AGCATGT-GAGGGGGATCGGGTCGGTCCC
130 AGCACGTAGAGGGGGATCGGGTCGGTCCC
** * * * * * * *
19852359 CGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCTGCACGCCCATTTCGTGGGTTGGCTTA
1 CGGCTTGCACATTCTGCCTCTC-CGACGGCTAAGCGCCAGCACGCTCATTTCATGGGTTGACTTA
* ** * *
19852424 GGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAAATCGAGGGTTGTGGTAGCAGGATTG
65 GGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAAATCAAGGGTTGTGGTAGCAGGATCG
* * *
19852487 GTAGCACGTAGAGGGGGATCGGGTCGATCCT
128 ATAGCACGTAGAGGGGGATCGGGTCGGTCCC
* * * * * *
19852518 CGGCTTGCACATTATGCCTCTCCAGTCGACTTAGTGCTC-GAACGCTCATTTCATGGGTTGACTT
1 CGGCTTGCACATTCTGCCTCTCC-GACGGCTAAGCGC-CAGCACGCTCATTTCATGGGTTGACTT
* * ** *
19852582 AGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAAA-CTAAGAGTTACGGTAGCAAGATCG
64 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATC-AAGGGTTGTGGTAGCAGGATCG
* *
19852646 ATAGCACGCAG-GGGGGATCGGGCCGGTCCC
128 ATAGCACGTAGAGGGGGATCGGGTCGGTCCC
* * *
19852676 CGGCTTGCCCATTCTG-CTCTCCGACTGGCTAAGCGCCAGCACGCTCGTTTCATGGGTT-AGCTC
1 CGGCTTGCACATTCTGCCTCTCCGAC-GGCTAAGCGCCAGCACGCTCATTTCATGGGTTGA-CTT
19852739 AGGCATACGGAGTTCATT-CCATGTCTAAG
64 AGGCATACGGAGTTCATTCCCA-GTCTAAG
19852768 CATACGGAGT
Statistics
Matches: 336, Mismatches: 61, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
156 7 0.02
157 61 0.18
158 140 0.42
159 124 0.37
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
CGGCTTGCACATTCTGCCTCTCCGACGGCTAAGCGCCAGCACGCTCATTTCATGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCAAGGGTTGTGGTAGCAGGATCGATA
GCACGTAGAGGGGGATCGGGTCGGTCCC
Found at i:19852791 original size:26 final size:26
Alignment explanation
Indices: 19852741--19852793 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19852731 GTTAGCTCAG
* *
19852741 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTACATTCCATATCTAA
19852767 GCATACGGAGTACATTCCCA-ATCTAA
1 GCATACGGAGTACATT-CCATATCTAA
19852793 G
1 G
19852794 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCATATCTAA
Found at i:19852988 original size:26 final size:26
Alignment explanation
Indices: 19852939--19852991 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19852929 GTTAGCTTAG
*
19852939 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19852965 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
19852991 G
1 G
19852992 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19853355 original size:26 final size:26
Alignment explanation
Indices: 19853319--19853371 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19853309 GTTGACTTAG
19853319 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19853345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19853371 G
1 G
19853372 ATCGGTACCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19855018 original size:26 final size:26
Alignment explanation
Indices: 19854978--19855033 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
19854968 TTGGTTGACT
* *
19854978 TAAGCATACGGAGTTCA-TCCCTAGTG
1 TAAGCATACGAAGTTCAGTCCC-AGTC
*
19855004 TAAGCATATGAAGTTCAGTCCCAGTC
1 TAAGCATACGAAGTTCAGTCCCAGTC
19855030 TAAG
1 TAAG
19855034 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCAGTCCCAGTC
Found at i:19855323 original size:159 final size:158
Alignment explanation
Indices: 19855042--19855328 Score: 369
Period size: 159 Copynumber: 1.8 Consensus size: 158
19855032 AGATCGGACC
* * * * * * *
19855042 GGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGAGGATCAGGCTGATCCCCGGCTTGC
1 GGACCGAGGGTTGCGGCAGCAGGATCGACAACACGCAGAGAGGACCAGGCCGATCCCCGACTGGC
* * * * *
19855107 GCATTCTGCCTCTCTAGCTGGCTGAGCGACCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
66 GCATTATGCCTCTCTAGCTGACTCAGCGACCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGG
19855172 GACTTCATTCCATGTCTAAGCCCCAACT
131 GACTTCATTCCATGTCTAAGCCCCAACT
* * *
19855200 GGACCGAGGGTTGTGGCAGCGGGATCGACAACACGCAGAGAGGGACCAGGCCGATCCTCGACTGG
1 GGACCGAGGGTTGCGGCAGCAGGATCGACAACACGCAGAGA-GGACCAGGCCGATCCCCGACTGG
* * ** *
19855265 CGCATTATGCCTCTC-CGCCTGACTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATA
65 CGCATTATGCCTCTCTAG-CTGACTCAGCGACCGCACGCCCGTTTCATGGGTTGACTTAGGCATA
19855329 CGTGAGTTGA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
158 37 0.35
159 70 0.65
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GGACCGAGGGTTGCGGCAGCAGGATCGACAACACGCAGAGAGGACCAGGCCGATCCCCGACTGGC
GCATTATGCCTCTCTAGCTGACTCAGCGACCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGG
GACTTCATTCCATGTCTAAGCCCCAACT
Found at i:19855697 original size:26 final size:26
Alignment explanation
Indices: 19855667--19855717 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19855657 GTTGACTTAG
*
19855667 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
19855693 GCATATGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
19855718 GGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19856109 original size:159 final size:159
Alignment explanation
Indices: 19855756--19856513 Score: 527
Period size: 159 Copynumber: 4.8 Consensus size: 159
19855746 GCAGGATTGG
* * * * * *
19855756 CAGCACACAG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
1 CAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCAGTCGACTAAGC
* * * * * * *
19855820 CCCCGCAAGCTTGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTGATTCCATGTCTAAGCCCTAAC
66 ACCCACAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
* * **
19855885 CGGACCGAGGGTTGTGGCAGCGGGACCGA
131 CGGACAGAGGGTTGCGGCAGCAAGACCGA
* * * ** * * * *
19855914 CAGCACGCAGGGGGGGATTGGGCTGATCCCCAGCTTGCACATTCTACCTTTCTAGTCGATTAAGC
1 CAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCAGTCGACTAAGC
* * *
19855979 ACCCACATGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
66 ACCCACAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
* * *
19856044 CGGACAGATGGTTGCGGTAGCAAGACCGC
131 CGGACAGAGGGTTGCGGCAGCAAGACCGA
** * * * * *
19856073 CAGCTGGTAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAG-CTGGCTTAG
1 CAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCAGTC-GACTAAG
* * * * ***
19856137 CACCCGA-AAGCT-GATTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCCA-GTGTAAGATT
65 CACCC-ACAAGCTCG-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * * * * * *
19856199 GAACTGGACTGAGGGTTGCGACAGTAGGATCGA
127 CAACCGGACAGAGGGTTGCGGCAGCAAGACCGA
* * * * * * *
19856232 CAGCACGTAG-GGAGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCTG-TTCA
1 CAGCACGCAGAGG-GGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCAGTC-GACTAA
* * * ** * **
19856295 GCACCCGA-ACGCT-GATTTCATGGGTTGACTTAGGCATACATAGTTCATTCCCA-GTGTAAGAT
64 GCACCC-ACAAGCTCG-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCC
** * * * * *
19856357 CGGACCGGACTGAGGATTGAGGCAGCAGGATCGA
126 CCAACCGGACAGAGGGTTGCGGCAGCAAGACCGA
* * * * * * * *
19856391 TAGCACGTAG-GGGGGATCAGGCCGGTCCCCGGCTTACGCATTCTGCCTCTCC-GATC-AGCTGA
1 CAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCAG-TCGA-CTAA
* * * *
19856453 GCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGG-GTTCATTCCATATCTAAGC
64 GCACCCACAAGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCATGTCTAAGC
19856514 ATACAGAGTT
Statistics
Matches: 488, Mismatches: 98, Indels: 28
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.01
158 96 0.20
159 381 0.78
160 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCAGTCGACTAAGC
ACCCACAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
CGGACAGAGGGTTGCGGCAGCAAGACCGA
Found at i:19856343 original size:318 final size:318
Alignment explanation
Indices: 19855766--19856514 Score: 714
Period size: 318 Copynumber: 2.4 Consensus size: 318
19855756 CAGCACACAG
* * * * *
19855766 GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCCCCCGCAAGCT
1 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGCTCGGCTGAGCACCCGAAAGCT
* * * * * *
19855831 TGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTGATTCCATGTCTAAGCCCTAACCGGACCGAGGG
66 TGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAACCGGACCGAGGG
* * * * * *
19855896 TTGTGGCAGCGGGACCGACAGCACGCAGGGGGGGATTGGGCTGATCCCCAGCTTGCACATTCTAC
131 TTGCGACAGCAGGACCGACAGCACGCAGGGAGGGATCGGGCTGATCCCCAGCTTGCACATTATAC
* * * * * * * *
19855961 CTTTCTAGTCGATTAAGCACCCACATGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATT
196 CTCTCCAGCCGATTAAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT
19856026 CCATGTCTAAGCCCCAGCCGGACAGATGGTTGCGGTAGCAAGACCGCCAGCTGGTAGA
261 CCATGTCTAAGCCCCAGCCGGACAGATGGTTGCGGTAGCAAGACCGCCAGCTGGTAGA
*
19856084 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAGCT-GGCTTAGCACCCGAAAGC
1 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCC-GCTCGGCTGAGCACCCGAAAGC
* * * * *
19856148 -TGATTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCCA-GTGTAAG-ATTGAACTGGACTG
65 TTG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACT-AACCGGACCG
* * * ** *
19856210 AGGGTTGCGACAGTAGGATCGACAGCACGTAGGGAGGGATCGGG-TCGATCCCTGGCTTGCGCAT
127 AGGGTTGCGACAGCAGGACCGACAGCACGCAGGGAGGGATCGGGCT-GATCCCCAGCTTGCACAT
* * *
19856274 TATGCCTCTCCAGCCTG-TTCAGCACCCGA-ACGCT-GATTTCATGGGTTGACTTAGGCATACAT
191 TATACCTCTCCAGCC-GATTAAGCACCC-ACACGCTCG-TTTCATGGGTTGACTTAGGCATACAG
* ** * * * * * * ** **
19856336 AGTTCATTCCCA-GTGTAAG-ATCGGACCGGACTGA-GGATTGAGGCAGCAGGATCGATAGCACG
253 AGTTCATT-CCATGTCTAAGCCCCAG-CCGGACAGATGG-TTGCGGTAGCAAGACCGCCAGCTGG
19856398 TAG-
315 TAGA
* * * * * * * * *
19856401 GGGGGATCAGGCCGGTCCCCGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCACCCGCACGCT
1 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGCTCGGCTGAGCACCCGAAAGCT
* * *
19856466 CGTTTCATGGGTTGGCTTAGGCATACAGG-GTTCATTCCATATCTAAGCA
66 TGTTTCATGGGTTGACTTAGGCATAC-GGAGTTCATTCCATGTCTAAGCA
19856515 TACAGAGTTC
Statistics
Matches: 347, Mismatches: 68, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
316 5 0.01
317 95 0.27
318 237 0.68
319 10 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (318 bp):
GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGCTCGGCTGAGCACCCGAAAGCT
TGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAACCGGACCGAGGG
TTGCGACAGCAGGACCGACAGCACGCAGGGAGGGATCGGGCTGATCCCCAGCTTGCACATTATAC
CTCTCCAGCCGATTAAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT
CCATGTCTAAGCCCCAGCCGGACAGATGGTTGCGGTAGCAAGACCGCCAGCTGGTAGA
Found at i:19856746 original size:26 final size:26
Alignment explanation
Indices: 19856696--19856747 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19856686 CAACTTAGGC
* * *
19856696 ATACGGAGTTCATCCCCAGTGTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
*
19856722 ATACGAAGTTCATTCCCAATCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
19856748 TCAGACCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGA
Found at i:19857038 original size:26 final size:26
Alignment explanation
Indices: 19856988--19857040 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19856978 GTTGGCTTAG
*
19856988 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
19857014 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
19857040 G
1 G
19857041 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:19857738 original size:26 final size:26
Alignment explanation
Indices: 19857709--19857761 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19857699 GTTGACTTAG
*
19857709 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
19857735 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19857761 G
1 G
19857762 ATTAGAGCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19858890 original size:26 final size:26
Alignment explanation
Indices: 19858860--19858912 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19858850 GTTGACTTAG
19858860 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
19858886 GCATATTGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19858912 G
1 G
19858913 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19859187 original size:159 final size:158
Alignment explanation
Indices: 19858893--19859390 Score: 488
Period size: 159 Copynumber: 3.1 Consensus size: 158
19858883 TAAGCATATT
* * * * ** *
19858893 GAGTTCATTCCCAGTCTAAG-ATCA-GACTGGATCGAGGGTTGTGGTAGCAGGATCGGTAGCACG
1 GAGTTCATT-CCAGTCTAAGCA-CAGGACCGGATCGAGGGTTGCGATAGCAGGACCGACAGCACA
* *
19858956 CAGGGGGGACCGGGCCGATCCCCGACTTG-TGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA
64 CAGGGGGGACCGGGCCGATCCCCGACTTGCT-CATTCTGCCTCTCCGATCGGCTGAGCGCCTGTA
* * *
19859020 TGCCCGTTTTGTGGGTTGGCTTAGGCATAGG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
* * * ** *
19859051 GAGTTAATTCCATGTCTAAGCCCCA-G-CCGGATCGAGGGTTTCGATAGTGGGACCGGCAGCACA
1 GAGTTCATTCCA-GTCTAAG-CACAGGACCGGATCGAGGGTTGCGATAGCAGGACCGACAGCACA
* * *
19859114 CAGAGGGGGACCGGGCCGATCCCCGACTTGCTCATTATGCCTCTTCGATCGGCTCAGCGCCTGTA
64 CAG-GGGGGACCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGATCGGCTGAGCGCCTGTA
* * * **
19859179 CGCTCGTTTCATGGGTTGACTAATCCATATGG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATA-GG
* ** * * ** *
19859211 G-GTTCATTCCCAGTCTAAG-ATAGGATTGGATCGAGGGTTGCGGTAGCAGGATCGACAAAACAT
1 GAGTTCATT-CCAGTCTAAGCACAGGACCGGATCGAGGGTTGCGATAGCAGGACCGACAGCACAC
* * * *
19859274 AGGAGGGGACCGGACCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGTAC
65 AGG-GGGGACCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGATCGGCTGAGCGCCTGTAC
* **
19859339 GCTCATTTCGTGGGTTGGCTTAGGCATACA
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAGG
19859369 GAGTTCATTCCAAGTCTAAGCA
1 GAGTTCATTCC-AGTCTAAGCA
19859391 TACGGAGTTC
Statistics
Matches: 274, Mismatches: 53, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.01
158 51 0.19
159 211 0.77
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCAGTCTAAGCACAGGACCGGATCGAGGGTTGCGATAGCAGGACCGACAGCACACA
GGGGGGACCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGATCGGCTGAGCGCCTGTACGC
TCGTTTCGTGGGTTGGCTTAGGCATAGG
Found at i:19859398 original size:26 final size:26
Alignment explanation
Indices: 19859362--19859413 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19859352 GTTGGCTTAG
19859362 GCATACAGAGTTCATT-CCAAGTCTAA
1 GCATACAGAGTTCATTCCCAA-TCTAA
*
19859388 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19859414 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19859500 original size:11 final size:11
Alignment explanation
Indices: 19859484--19859527 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
19859474 CCCGGGGCAC
19859484 CATCGCCAGAG
1 CATCGCCAGAG
19859495 CATCGCCAGAG
1 CATCGCCAGAG
*
19859506 CATCGCCGGAG
1 CATCGCCAGAG
*
19859517 CATCACCAGAG
1 CATCGCCAGAG
19859528 AGCCTAACCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.09
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:19863058 original size:158 final size:158
Alignment explanation
Indices: 19862598--19863301 Score: 618
Period size: 159 Copynumber: 4.4 Consensus size: 158
19862588 TAAGCATATA
* * * * *
19862598 GAGTTCATTCCCAATCTAAGACCAGA-CGGACCGAGGGTTGCGGCAACAGGATCGGCAGTACGTA
1 GAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * * * *
19862662 G-GAGGGACTGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCTGCATG
66 GAG-GGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACG
* * *
19862726 CCCATTTTATGGGTTCG-CTTAGGCATAGG
130 CTCATTTCATGGGTT-GACTTAGGCATACG
* * ** * *
19862755 GAGTTCATT-CCATGTCTAA-ACCCTAG-CCAGACCGAGGGTTGTGATAGCGGGACCGACAGCAC
1 GAGTTCATTCCCA-GTCTAAGA-CC-AGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* *
19862817 GCAGAAGGGGACCGGGGCAATCCCCAGCTTG-GACATTATGCCTCTCCGGTCGGCTCAGTGCCCG
63 GCAG-AGGGGACCGGGCCAATCCCCAGCTTGCG-CATTATGCCTCTCCGGTCGGCTCAGCGCCCG
* * *
19862881 CACGATCGTTTCATGGGTTGACTTAAGCATACG
126 CACGCTCATTTCATGGGTTGACTTAGGCATACG
* * * * *
19862914 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCCGTAGGATCGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * * *
19862979 GAGGGGACCGGGCCAATCCACAGCTTACGCATTCTGCCTCTACGGCCGGTTGAGCGCCCGCACGC
66 GAGGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGC
** *
19863044 TCATTTTGTGGGTTGGCTTAGGCATACG
131 TCATTTCATGGGTTGACTTAGGCATACG
* * * * * ** *
19863072 GAGTTCATT-CCATGTCTAAGCCCCAG-TCGAACCGAGGGTTGTGGCAGCGGGA-CTGGTAGTAC
1 GAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GACAGCAC
* * * * * ** * *
19863134 GCAGATGGGGATCGAGCCGATCCCCGGCTTGCTCATTATGCCTCTCCGGTTAGCTCAACGCCCGA
63 GCAGA-GGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGC
**
19863199 ACGCTTGTTTCATGGGTTGACTTAGGCATACG
127 ACGCTCATTTCATGGGTTGACTTAGGCATACG
* * ** ** **
19863231 GAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGCAATAGGATCGACAGCACATA
1 GAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
19863296 GAGGGG
66 GAGGGG
19863302 GATCCCCTGC
Statistics
Matches: 427, Mismatches: 101, Indels: 37
0.76 0.18 0.07
Matches are distributed among these distances:
156 4 0.01
157 20 0.05
158 162 0.38
159 232 0.54
160 9 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GAGGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGC
TCATTTCATGGGTTGACTTAGGCATACG
Found at i:19863211 original size:317 final size:315
Alignment explanation
Indices: 19862588--19863424 Score: 945
Period size: 317 Copynumber: 2.7 Consensus size: 315
19862578 ATCCCTAGTC
** * * *
19862588 TAAGCATATAGAGTTCATTCCCAATCTAAGACCAGA-CGGACCGAGGGTTGCGGCAACAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCG
* * * * **
19862652 GCAGTACGTAG-GAGGGACTGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAG
66 ACAGCACGCAGAG-GGGAC-GGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAG
* * * * * * * *
19862716 CGCCTGCATGCCCATTTTATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAG
129 CGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* ** * *
19862781 CCAGACCGAGGGTTGTGATAGCGGGACCGACAGCACGCAGAAGGGGACCGGGGCAATCCCCAGCT
194 CGA-ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCGAGCCAATCCCCAGCT
* * ** *
19862846 TGGACATTATGCCTCTCCGGTCGGCTCAGTGCCCGCACGATCGTTTCATGGGTTGACT
258 TGCACATTATGCCTCTCCGGTCAGCTCAACGCCCGAACGATCGTTTCATGGGTTGACT
* **
19862904 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCCGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCG
* * * * * *
19862969 ATAGCACGCAGAGGGGACCGGGCCAATCCACAGCTTACGCATTCTGCCTCTACGGCCGGTTGAGC
66 ACAGCACGCAGAGGGGA-CGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGC
19863034 GCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
130 GCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-
* ** * * * * *
19863099 CGAACCGAGGGTTGTGGCAGCGGGACTGGTAGTACGCAGATGGGGATCGAGCCGATCCCCGGCTT
194 CGAACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCGAGCCAATCCCCAGCTT
* * * *
19863164 GCTCATTATGCCTCTCCGGTTAGCTCAACGCCCGAACGCTTGTTTCATGGGTTGACT
259 GCACATTATGCCTCTCCGGTCAGCTCAACGCCCGAACGATCGTTTCATGGGTTGACT
* * **
19863221 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGCAATAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCG
* * * * * *
19863286 ACAGCA--CATAGAGG--GGG---ATCCCCTGCTTGCACATTCTGTCTCTCCGGCCAGCTGATCG
66 ACAGCACGCAGAGGGGACGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCG
* * * * * *
19863344 CGCTCACGCTCGTTTTGTTGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCCCCAGCT
131 CCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC-
* *
19863409 GGACCAAGGGTTGTGG
195 GAACCGAGGGTTGTGG
19863425 TAGCATCACC
Statistics
Matches: 439, Mismatches: 77, Indels: 17
0.82 0.14 0.03
Matches are distributed among these distances:
308 1 0.00
309 103 0.23
312 3 0.01
315 6 0.01
316 32 0.07
317 290 0.66
318 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (315 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCG
ACAGCACGCAGAGGGGACGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCG
CCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCG
AACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCGAGCCAATCCCCAGCTTGC
ACATTATGCCTCTCCGGTCAGCTCAACGCCCGAACGATCGTTTCATGGGTTGACT
Found at i:19864061 original size:159 final size:157
Alignment explanation
Indices: 19863611--19864076 Score: 542
Period size: 158 Copynumber: 2.9 Consensus size: 157
19863601 GATCAGATCG
* * * * * * * *
19863611 GACCGAGGGTAACGGCAGCAGGATCGACAGCATGCAGGGGGGATCAGGCCGATCCCTGACTTGCG
1 GACCGAGGGTTATGGCAGCGGGATCGGCAGCACGCAAGGCGGACCAGGCCGATCCCTGACTTGCG
*
19863676 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGT
66 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG-
* * *
19863741 AGTTCATTCCATTTCTAAGCCCCAGCTG
130 AGTTCATTCCATGTCTAAGCCCCAACTA
* *
19863769 GACCGAGGGTTATGGCAGCGGGATCGGCAGCACGCAAGGGGGACCAGGCCGATCCCTGACTTGGG
1 GACCGAGGGTTATGGCAGCGGGATCGGCAGCACGCAAGGCGGACCAGGCCGATCCCTGACTTGCG
* * * *
19863834 CATTCTACCTCTCCGGTCGGATGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GG
19863899 AGTTCATTCCATGTCTAAGCCCCAACTA
130 AGTTCATTCCATGTCTAAGCCCCAACTA
* * * * * *
19863927 GACTGAGGGTTGTGGTAGTGGGA-CTGGCAGCACGCAGAGGCGGATC-GAGCCGATCCCTGGCTT
1 GACCGAGGGTTATGGCAGCGGGATC-GGCAGCACGCA-AGGCGGACCAG-GCCGATCCCTGACTT
* * * * * * * * *
19863990 GCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCATACGCTCATTTCGTGGGTTGACTTATGCATA
63 GCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATA
*
19864055 TAGAGTTCATTCCCA-GTCTAAG
128 -GGAGTTCATT-CCATGTCTAAG
19864077 ATCGGACCGG
Statistics
Matches: 264, Mismatches: 39, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
157 1 0.00
158 170 0.64
159 90 0.34
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GACCGAGGGTTATGGCAGCGGGATCGGCAGCACGCAAGGCGGACCAGGCCGATCCCTGACTTGCG
CATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGA
GTTCATTCCATGTCTAAGCCCCAACTA
Found at i:19865282 original size:159 final size:157
Alignment explanation
Indices: 19865078--19865496 Score: 466
Period size: 158 Copynumber: 2.6 Consensus size: 157
19865068 TTCGGTCGAA
* *
19865078 TGAGC-CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * * *
19865142 CCAGGTGGACCGAGGGTTCTGACAGCAGGACCGGCAGCACGCAGAGGGGGATCAGGCTGATCCCC
66 CCA-GTGAACCGAGGGTTCTGACAGCAGGACCGACAGCACGCAG-GGGGGATCAGGCCGATCCCA
*** *
19865207 GGCTTGTTCATTATGCCACTCCAGCCGGT
129 GGCTTACGCATTATGCCACTCCAGCCGGC
* * *
19865236 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAAA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT-AAG
* ** * * * * * * *
19865300 TCAAATTGAACCTAGGGTTAC-GAGAGCAGGATCGACAGCATGTAGGGGGGATCGGGCCGATCCC
64 CCCCAGTGAACCGAGGGTT-CTGACAGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCC
* *
19865364 AGGCTTACGCATTTTGCCTCTCCAGCCGGC
128 AGGCTTACGCATTATGCCACTCCAGCCGGC
* * * * * *
19865394 TGAACGCCCGCACACTTGTTTCGTGGGTTGGCTTAGTCATACAGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* *
19865459 CCAGTCGAACCGAGGGTTATGGCAGCAGGACCGACAGC
66 CCAGT-GAACCGAGGGTTCTGACAGCAGGACCGACAGC
19865497 GAGATCAGCA
Statistics
Matches: 211, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 8 0.04
158 119 0.56
159 76 0.36
160 8 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGTGAACCGAGGGTTCTGACAGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCCAGG
CTTACGCATTATGCCACTCCAGCCGGC
Found at i:19865665 original size:26 final size:26
Alignment explanation
Indices: 19865614--19865666 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19865604 GTTGACTTAG
**
19865614 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
*
19865640 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
19865666 G
1 G
19865667 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAACCTAA
Found at i:19866002 original size:159 final size:158
Alignment explanation
Indices: 19865704--19866009 Score: 348
Period size: 159 Copynumber: 1.9 Consensus size: 158
19865694 CAAAATCAGC
* * * * * * *
19865704 AGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTTTGCCTCACCGACTGGCTGAGCGC
1 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCACCGACTAGCTCAACGC
* * * * * *
19865769 CCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
66 CCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCG
*
19865834 AACCGAGGGTTGTGGCAGCGGGACTGGT
131 AACCGAGGGTTGCGGCAGCGGGACTGGT
* * * * *
19865862 AGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCTCATTATGCCTCTCCGATTAGCTCAACG
1 AGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCACCGACTAGCTCAACG
** *
19865927 CCCGAACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA
65 CCCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-
*
19865990 CCAGAATC-AGGGTTGCGGCA
128 CC-GAACCGAGGGTTGCGGCA
19866010 ATAGGATCGA
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
158 11 0.09
159 103 0.85
160 7 0.06
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCACCGACTAGCTCAACGC
CCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCG
AACCGAGGGTTGCGGCAGCGGGACTGGT
Found at i:19866028 original size:159 final size:156
Alignment explanation
Indices: 19865640--19866038 Score: 342
Period size: 159 Copynumber: 2.5 Consensus size: 156
19865630 CCCAGTCTAA
** * *
19865640 GCATACGGAGTTCATTCCCAACCTAAGATCAGACCGGACTGAGGGTTGCGATAGCAAA--ATC-A
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATCAGGGTTGCG---GCAAAGGATCGA
* * * * * * *
19865702 GCAGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTTTGCCTCACCGACTGGCTGAGC
62 -CAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCACCGACTAGCTCAAC
* * *
19865767 GCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
126 GCCCGAACGCCCGTTTCATGGGTTGACTTAG
* ** * * * **
19865798 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGAACCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAATC-AGGGTTGCGGCA-AAGGATC-G
** * * * * *
19865860 GTAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCTCATTATGCCTCTCCGATTAGCTCAA
61 ACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCACCGACTAGCTCAA
**
19865925 CGCCCGAACGCTTGTTTCATGGGTTGACTTAG
125 CGCCCGAACGCCCGTTTCATGGGTTGACTTAG
19865957 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAATCAGGGTTGCGGCAATAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATCAGGGTTGCGGCAA-AGGATCGACA
*
19866022 GTACGCAGGGAGGGACC
64 GCACGCAGGG-GGGACC
19866039 TGGCTAGTCC
Statistics
Matches: 183, Mismatches: 43, Indels: 29
0.72 0.17 0.11
Matches are distributed among these distances:
155 3 0.02
157 6 0.03
158 43 0.23
159 123 0.67
160 8 0.04
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCAGGGTTGCGGCAAAGGATCGACAGC
ACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCACCGACTAGCTCAACGCCCG
AACGCCCGTTTCATGGGTTGACTTAG
Found at i:19866642 original size:159 final size:158
Alignment explanation
Indices: 19866378--19866682 Score: 423
Period size: 159 Copynumber: 1.9 Consensus size: 158
19866368 GGACCGGGCC
* * * * *
19866378 GAGGGTTGTGGCAACAGGATCGGCAGCATACAGAAGGGACCAGGCCAATCCTCGACTTGCGCATT
1 GAGGGTTGTAGCAACAGGACCGACAGCACACAGAAGGGACCAGGCCAATCCCCGACTTGCGCATT
* * * * *
19866443 CTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTCGGCATAGGGAGTT
66 CTGCCTCTCCGGTCAGCTGAGCACCCGCACGCCCGCTTCGTGGGTTAGCTTAGGCATACGGAGTT
19866508 CATTCCATGTCTAAGCCCCAGCTGAACT
131 CATTCCATGTCTAAGCCCCAGCTGAACT
* * * *
19866536 GAGGGTTGTAGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGACTTGCGCAT
1 GAGGGTTGTAGCAACAGGACCGACAGCACACAGA-AGGGACCAGGCCAATCCCCGACTTGCGCAT
* * * *
19866601 TCTGCCTTTTCGGTC-GACTGAGCACCCGTACGCTCGCTTCGTGGGTTAGCTTAGGCATACGGAG
65 TCTGCCTCTCCGGTCAG-CTGAGCACCCGCACGCCCGCTTCGTGGGTTAGCTTAGGCATACGGAG
19866665 TTCATTCCATGTCTAAGC
129 TTCATTCCATGTCTAAGC
19866683 ATACGGAGTT
Statistics
Matches: 127, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
158 30 0.24
159 97 0.76
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GAGGGTTGTAGCAACAGGACCGACAGCACACAGAAGGGACCAGGCCAATCCCCGACTTGCGCATT
CTGCCTCTCCGGTCAGCTGAGCACCCGCACGCCCGCTTCGTGGGTTAGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCTGAACT
Found at i:19866684 original size:26 final size:26
Alignment explanation
Indices: 19866655--19866707 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19866645 GTTAGCTTAG
19866655 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19866681 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19866707 G
1 G
19866708 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19867791 original size:158 final size:158
Alignment explanation
Indices: 19867629--19867921 Score: 335
Period size: 158 Copynumber: 1.9 Consensus size: 158
19867619 GTGGCAACGA
* * *
19867629 GATCGATAGCATGTAGAGGGGAAAAAGT-CGATCCCCGGCTTGTGCATTATGCCATA-CCGA-TC
1 GATCGACAGCACGTAGAGGGGAAAAAGTCCG-TCCCCGGCTTGCGCATTATG-CATATCCGACT-
*
19867691 GGCTCAGCGGC-CGCATGTTCATTTCGTGGCTTGACTTAGGCGA-GCGGAGTTCATTCCCAGTCT
63 GGCTCAGC-GCTCGCATGTTCATTTCGTGGCTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCT
19867754 AAGATCAGATCGGACCGAGGGTTTCGACAGCAG
126 AAGATCAGATCGGACCGAGGGTTTCGACAGCAG
* **** * * *
19867787 GATCGACAGCACGTAGGGGGGACCGGGTCCGTCCCCGGCTTGCGCATTCTGCTTATCCGACTGGT
1 GATCGACAGCACGTAGAGGGGAAAAAGTCCGTCCCCGGCTTGCGCATTATGCATATCCGACTGGC
* * * * * *
19867852 TGAGCGCTCGCATGTTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
66 TCAGCGCTCGCATGTTCATTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
*
19867917 TAGAT
131 CAGAT
19867922 TGGATTGAGG
Statistics
Matches: 111, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
157 6 0.05
158 102 0.92
159 3 0.03
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (158 bp):
GATCGACAGCACGTAGAGGGGAAAAAGTCCGTCCCCGGCTTGCGCATTATGCATATCCGACTGGC
TCAGCGCTCGCATGTTCATTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGATCGGACCGAGGGTTTCGACAGCAG
Found at i:19868272 original size:26 final size:26
Alignment explanation
Indices: 19868242--19868294 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19868232 GTTGACTTAG
19868242 GCATACAAAGTTCA-TCCCAAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
*
19868268 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19868294 G
1 G
19868295 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19868782 original size:26 final size:26
Alignment explanation
Indices: 19868746--19868796 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19868736 TGGCTTGGGT
19868746 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
19868772 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19868797 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19869286 original size:26 final size:26
Alignment explanation
Indices: 19869256--19869308 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19869246 GTTGGCTTAG
19869256 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
19869282 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19869308 G
1 G
19869309 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19869943 original size:162 final size:162
Alignment explanation
Indices: 19869639--19869966 Score: 441
Period size: 162 Copynumber: 2.0 Consensus size: 162
19869629 AAAATCTTCT
* * *
19869639 CCACTTTCGAGTTTTTAGCTAAATTTTTTTGTGGCATGCCAACAAAAATAAAAGTATCACCTCTA
1 CCACTTTCGAGTTTTTAGCTAAATTTTTATGTCGCATGCCAACAAAAATAAAAGGATCACCTCTA
* * * *
19869704 CCAAATTTGGGGACAAAACTCTTTCTAAAAAATTTTAAAAAATCTTGAACCGTTAAAACATTTCA
66 CAAAATTTGGGGACAAAACTCTTTCTAAAAAATTTTAAAAAATCTCGAACCGTAAAAACATTTAA
*
19869769 AAATCTTGAAAAATAGAAAACGGGTCATCTTGG
131 AAATCATGAAAAATAGAAAACGGGTCATCTT-G
* * *
19869802 CCACTTTCGAGTTTTTAGCTGAATTTTTCATG-CG-AT-CCTAA-AAAAATACAAGGATCATCTC
1 CCACTTTCGAGTTTTTAGCTAAATTTTT-ATGTCGCATGCC-AACAAAAATAAAAGGATCACCTC
**
19869863 TACAAAATTTTGGGG-CAAAACTCTTTCTAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTT
64 TACAAAA-TTTGGGGACAAAACTCTTTCTAAAAAA-TTTTAAAAAATCTCGAACCGTAAAAACAT
* *
19869927 TTAAAAATCATGAAAAATAGAAAATGGGTCGTCTTG
127 TTAAAAATCATGAAAAATAGAAAACGGGTCATCTTG
19869963 CCAC
1 CCAC
19869967 GAAACTTCAC
Statistics
Matches: 146, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
161 49 0.34
162 67 0.46
163 28 0.19
164 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (162 bp):
CCACTTTCGAGTTTTTAGCTAAATTTTTATGTCGCATGCCAACAAAAATAAAAGGATCACCTCTA
CAAAATTTGGGGACAAAACTCTTTCTAAAAAATTTTAAAAAATCTCGAACCGTAAAAACATTTAA
AAATCATGAAAAATAGAAAACGGGTCATCTTG
Found at i:19870477 original size:158 final size:160
Alignment explanation
Indices: 19870315--19870699 Score: 401
Period size: 158 Copynumber: 2.4 Consensus size: 160
19870305 CTACACGCCT
* * * * *
19870315 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-TCCTAGCCGGACCTAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAT-CGAACCAGACCGAGGG
* * ** * * *
19870379 TTATGGCAGCGGGACCGACAACATGCAGAGGGGGACCGGGCCGATCCCTTG-CTTACGCATTATG
65 TTACGACAGCAAGACCGACAACAAGCAG-GAGGGACCGGGCCGATCCC-CGACTTACGCATTATG
*
19870443 CCTC-TCTGACCGGC-TCAGCACC-GTACGCTC
128 CCTCTTCCGACCGGCTTCAGCACCTGTACGCTC
* *
19870473 GTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCC-TAGTCTAAGATCGAACCAGACCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCGAACCAGACCGAGGG
* * ** * * * *
19870537 TTGCGACAGCAAGATCGACAGTAAGCAGGAGGGATCGGGCTGGTCCCCGACTTACGCATTTTGCC
65 TTACGACAGCAAGACCGACAACAAGCAGGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCC
* **
19870602 TCTTCCGACCGGCTTGAGTGCCTGTACGCTC
130 TCTTCCGACCGGCTTCAGCACCTGTACGCTC
**
19870633 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCACA-GTCTAAGATTCG-ACCAGACCGA-G
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGA-TCGAACCAGACCGAGG
19870695 GTTAC
64 GTTAC
19870700 ACGGTAGCAG
Statistics
Matches: 187, Mismatches: 31, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
156 1 0.01
157 32 0.17
158 81 0.43
159 11 0.06
160 58 0.31
161 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (160 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGT
TACGACAGCAAGACCGACAACAAGCAGGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCT
CTTCCGACCGGCTTCAGCACCTGTACGCTC
Found at i:19871322 original size:157 final size:156
Alignment explanation
Indices: 19871091--19871376 Score: 380
Period size: 157 Copynumber: 1.8 Consensus size: 156
19871081 TGCGGTAGCA
* * * * * *
19871091 GGATCGACAGTATGCAGGGGGGACCGGACCGATCTCTGGCTTGCGCATTCTGCCTCTCCGACCGA
1 GGATCGACAGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGA
** * *
19871156 TTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTTATT-CCATGTCTAAG
66 TTGAGCACCCAAACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCA-GTCTAAG
19871220 CCCCAGCCAGACGAGGGTTGTGGCATC
130 CCCCAGCCAGACGAGGGTTGTGGCATC
*
19871247 GGATCGACAGCACGCAGAGGGGGACC-GAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGTCC
1 GGATCGACAGCACGCAG-GGGGGACCGGA-CCGATCCCCGGCTTGCACATTATGCCTCTCCGACC
* * * *
19871311 GGCTT-AGCACCCAAACGCTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTA
64 -GATTGAGCACCCAAACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTA
19871375 AG
128 AG
19871377 ATCGAACCAG
Statistics
Matches: 111, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
156 17 0.15
157 88 0.79
158 6 0.05
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (156 bp):
GGATCGACAGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGA
TTGAGCACCCAAACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGC
CCCAGCCAGACGAGGGTTGTGGCATC
Found at i:19871387 original size:157 final size:158
Alignment explanation
Indices: 19871042--19871402 Score: 374
Period size: 157 Copynumber: 2.3 Consensus size: 158
19871032 TAAGCATATA
* * * * * * *
19871042 GAGTTCATTCTCAGTCTAAGAT-TAGATCGGATCGAGGGTTGCGGTAGCAGGATCGACAGTATGC
1 GAGTTCATTCCCAGTCTAAGATCCA-ACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * ** *
19871106 AGGGGGGACCGGACCGATCTCTGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCACCCGCATG
65 AGGGGGGACCGGACCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGATTGAGCACCCAAACG
19871171 CCCGTTTCGTGGGTTGGCTTAGGCATAAG
130 CCCGTTTCGTGGGTTGGCTTAGGCATAAG
* ** * * *
19871200 GAGTTTATT-CCATGTCTAAGCCCCAGCCAGA-CGAGGGTTGTGGCATC-GGATCGACAGCACGC
1 GAGTTCATTCCCA-GTCTAAGATCCAACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* *
19871262 AGAGGGGGACC-GAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGTCCGGCTT-AGCACCCAA
65 AG-GGGGGACCGGA-CCGATCCCCGGCTTGCACATTATGCCTCTCCGACC-GATTGAGCACCCAA
* * *
19871325 ACGCTCGTTTCGTGGGTTGTCTTAGGCATACG
127 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAAG
* * * *
19871357 GAGTTCATTCCCAGTCTAAGATCGAACCAGATAGAAGGTTACGGCA
1 GAGTTCATTCCCAGTCTAAGATCCAACCAGATCGAGGGTTGCGGCA
19871403 TCACGTAGGG
Statistics
Matches: 162, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
156 17 0.10
157 110 0.68
158 34 0.21
159 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCCAACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GGGGGGACCGGACCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGATTGAGCACCCAAACGC
CCGTTTCGTGGGTTGGCTTAGGCATAAG
Found at i:19871546 original size:26 final size:26
Alignment explanation
Indices: 19871496--19871548 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19871486 GTTGGCTTAG
*
19871496 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
19871522 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
19871548 G
1 G
19871549 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:19871814 original size:57 final size:57
Alignment explanation
Indices: 19871745--19871856 Score: 224
Period size: 57 Copynumber: 2.0 Consensus size: 57
19871735 GGGACTGGCA
19871745 GCACTCAGAGGGGGATCGGGTGGATCCCCGGCTTGTGCATTATGCCTCTCCGATCAG
1 GCACTCAGAGGGGGATCGGGTGGATCCCCGGCTTGTGCATTATGCCTCTCCGATCAG
19871802 GCACTCAGAGGGGGATCGGGTGGATCCCCGGCTTGTGCATTATGCCTCTCCGATC
1 GCACTCAGAGGGGGATCGGGTGGATCCCCGGCTTGTGCATTATGCCTCTCCGATC
19871857 GGCTCAGTGC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.15, C:0.29, G:0.33, T:0.23
Consensus pattern (57 bp):
GCACTCAGAGGGGGATCGGGTGGATCCCCGGCTTGTGCATTATGCCTCTCCGATCAG
Found at i:19874913 original size:157 final size:155
Alignment explanation
Indices: 19874406--19874928 Score: 468
Period size: 158 Copynumber: 3.3 Consensus size: 155
19874396 TGTATGTTCG
* * * *
19874406 TTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCA-GTGTAAGATCGAACCAAATCAAGGGT
1 TTTCATGGGTTAGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATAG-ACCAAATCAAGGGT
* * * * ** *
19874470 TGTGGTAGTAGGATCGACAGCATGTGAGGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTTCCT
64 TGTGGTAGCAGGATCGATAGCACGAGAGGGGGATCGGGTCGGTCCCCGGCTTGCACATTC-TGCT
* * * * *
19874535 CTCTGGCCGGCTGAGCGCCTGCACGCCCA
128 CTCCGACTGGCTAAGCGCC-GCACGCTCA
* * * * ** *
19874564 TTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAAATCGAGGGT
1 TTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG--ATAGACCAAATCAAGGGT
* * * * *
19874628 TGTGGTAGCAGGATTGGTAGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCACATTATGCC
64 TGTGGTAGCAGGATCGATAGCACG-AGAGGGGGATCGGGTCGGTCCCCGGCTTGCACATTCTG-C
* * * * *
19874693 TCTCC-AGTCGACTTAGTGCTCGAACGCTCA
127 TCTCCGACT-GGCTAAGCGC-CGCACGCTCA
*
19874723 TTTCAT-GGTT-GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATAAGACCAAA-CTAAGA
1 TTTCATGGGTTAG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGAT-AGACCAAATC-AAGG
** * * *
19874784 GTTACGGTAGCAAGATCGATAGCACGCAG-GGGGGATCGGGCCGGTCCCCGGCTTGCCCATTCTG
62 GTTGTGGTAGCAGGATCGATAGCACG-AGAGGGGGATCGGGTCGGTCCCCGGCTTGCACATTCTG
*
19874848 CTCTCCGACTGGCTAAGCGCCAGCACGCTCG
126 CTCTCCGACTGGCTAAGCGCC-GCACGCTCA
*
19874879 TTTCATGGGTTAGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATAG
1 TTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATAG
19874929 GAGTACATTC
Statistics
Matches: 290, Mismatches: 57, Indels: 37
0.76 0.15 0.10
Matches are distributed among these distances:
155 1 0.00
156 29 0.10
157 72 0.25
158 129 0.44
159 57 0.20
160 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.25
Consensus pattern (155 bp):
TTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATAGACCAAATCAAGGGTTG
TGGTAGCAGGATCGATAGCACGAGAGGGGGATCGGGTCGGTCCCCGGCTTGCACATTCTGCTCTC
CGACTGGCTAAGCGCCGCACGCTCA
Found at i:19875143 original size:26 final size:26
Alignment explanation
Indices: 19875094--19875146 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19875084 GTTAGCTTAG
*
19875094 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19875120 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
19875146 G
1 G
19875147 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19875510 original size:26 final size:26
Alignment explanation
Indices: 19875474--19875526 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19875464 GTTGACTTAG
19875474 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19875500 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19875526 G
1 G
19875527 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19877179 original size:26 final size:26
Alignment explanation
Indices: 19877139--19877194 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
19877129 TTGGTTGACT
* *
19877139 TAAGCATACGGAGTTCA-TCCCTAGTG
1 TAAGCATACGAAGTTCAGTCCC-AGTC
*
19877165 TAAGCATATGAAGTTCAGTCCCAGTC
1 TAAGCATACGAAGTTCAGTCCCAGTC
19877191 TAAG
1 TAAG
19877195 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCAGTCCCAGTC
Found at i:19877858 original size:26 final size:26
Alignment explanation
Indices: 19877828--19877878 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19877818 GTTGACTTAG
*
19877828 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
19877854 GCATATGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
19877879 GGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19878232 original size:159 final size:159
Alignment explanation
Indices: 19877948--19878674 Score: 462
Period size: 159 Copynumber: 4.6 Consensus size: 159
19877938 TCGATCCCTG
* * * * *
19877948 GCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCCCCCGCAAGCTTGTTTCGTGGGTTGGCTTAGG
1 GCTTGCACATTCTGCCTCTCCAGTCGACTGAGCACCCACAAGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * * **
19878013 CGTAGGGAGTTGATTCCATGTCTAAGCCCTAACCGGACCGAGGGTTGTGGCAGCGGGACCGACAG
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGGTTGCGGCAGCAAGACCGACAG
19878078 CACGCAGGGGGGGACTGGGCTGATCCCCA
131 CACGCAGGGGGGGACTGGGCTGATCCCCA
* * * * *
19878107 GCTTGCACATTCTGCCTTTCTAGTCGATTGAGCACCCACATGCTCGTTTCGTGTGTTGGCTTAGG
1 GCTTGCACATTCTGCCTCTCCAGTCGACTGAGCACCCACAAGCTCGTTTCGTGGGTTGGCTTAGG
* * * *
19878172 CATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGATGGTTGCGGTAGCAAGACCGCCAG
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGGTTGCGGCAGCAAGACCGACAG
** * * * **
19878237 CTGGTAGAGGGGGA-TCGGGCCGATCCCTG
131 CACGCAGGGGGGGACT-GGGCTGATCCCCA
* * * * * * *
19878266 GCTTGCGCATTATGCCTCTCCAG-CTGGCTTAGCACCCGA-ACGCT-GATTTCATGGGTTGACTT
1 GCTTGCACATTCTGCCTCTCCAGTC-GACTGAGCACCC-ACAAGCTCG-TTTCGTGGGTTGGCTT
* * ** * * * * * * *
19878328 AGGCATACGTAGTTCATTCCCA-GTGTAAGATCGAACTGGACTGAGGGTTGCGACAGTAGGATCG
63 AGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACAGAGGGTTGCGGCAGCAAGACCG
* * **
19878392 ACAGCACGTAGGGAGGGA-TCGGG-TCGATCCCTG
127 ACAGCACGCAGGGGGGGACT-GGGCT-GATCCCCA
* * * * * * * *
19878425 GCTTGCGCATTATGCCTCTCCAGCCTG-TTCAGCACCCGA-ACGCT-GATTTCATGGGTTGACTT
1 GCTTGCACATTCTGCCTCTCCAGTC-GACTGAGCACCC-ACAAGCTCG-TTTCGTGGGTTGGCTT
** * ** ** * * * * *
19878487 AGGCATACATAGTTCATTCCCA-GTATAAGATCGGACCGGACTGAGGATTGAGGCAGCAGGATCG
63 AGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACAGAGGGTTGCGGCAGCAAGACCG
* * * *
19878551 ATAGCACGTA-GGGGGGA-TCGGGCCGGTCCCC-
127 ACAGCACGCAGGGGGGGACT-GGGCTGATCCCCA
* * * * *
19878582 GACTTACGCATTCTGCCTCTCC-GATC-AGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTT
1 G-CTTGCACATTCTGCCTCTCCAG-TCGA-CTGAGCACCCACAAGCTCGTTTCGTGGGTTGGCTT
*
19878645 AGGCATACAGG-GTTCATTCCATATCTAAGC
63 AGGCATAC-GGAGTTCATTCCATGTCTAAGC
19878675 ATACAGAGTT
Statistics
Matches: 465, Mismatches: 87, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.01
158 86 0.18
159 367 0.79
160 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCTTGCACATTCTGCCTCTCCAGTCGACTGAGCACCCACAAGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGGTTGCGGCAGCAAGACCGACAG
CACGCAGGGGGGGACTGGGCTGATCCCCA
Found at i:19878504 original size:318 final size:318
Alignment explanation
Indices: 19877927--19878673 Score: 723
Period size: 318 Copynumber: 2.4 Consensus size: 318
19877917 CAGCACACAG
* * *
19877927 GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCCCCCGCAAGCT
1 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAGTCGGCTGAGCACCCGCAAGCT
* * * * * * *
19877992 TGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTGATTCCATGTCTAAGCCCTAACCGGACCGAGGG
66 TGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCGAACCGGACCGAGGG
* * * * *
19878057 TTGTGGCAGCGGGACCGACAGCACGCAGGGGGGGACTGGGCTGATCCCCAGCTTGCACATTCTGC
131 TTGCGACAGCAGGACCGACAGCACGCAGGGAGGGACTGGGCTGATCCCCAGCTTGCACATTATGC
* * * * * * * * *
19878122 CTTTCTAGTCGATTGAGCACCCACATGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATT
196 CTCTCCAGCCGATTCAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT
19878187 CCATGTCTAAGCCCCAGCCGGACAGATGGTTGCGGTAGCAAGACCGCCAGCTGGTAGA
261 CCATGTCTAAGCCCCAGCCGGACAGATGGTTGCGGTAGCAAGACCGCCAGCTGGTAGA
*
19878245 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAG-CTGGCTTAGCACCCG-AACG
1 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAGTC-GGCTGAGCACCCGCAA-G
* * * * *
19878308 C-TGATTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCCA-GTGTAAGATCGAACTGGACTG
64 CTTG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCGAACCGGACCG
* * * ** *
19878371 AGGGTTGCGACAGTAGGATCGACAGCACGTAGGGAGGGA-TCGGG-TCGATCCCTGGCTTGCGCA
127 AGGGTTGCGACAGCAGGACCGACAGCACGCAGGGAGGGACT-GGGCT-GATCCCCAGCTTGCACA
19878434 TTATGCCTCTCCAGCCTG-TTCAGCACCCGA-ACGCT-GATTTCATGGGTTGACTTAGGCATACA
190 TTATGCCTCTCCAGCC-GATTCAGCACCC-ACACGCTCG-TTTCATGGGTTGACTTAGGCATACA
* * ** * * * * * * ** **
19878496 TAGTTCATTCCCA-GTATAAG-ATCGGACCGGACTGA-GGATTGAGGCAGCAGGATCGATAGCAC
252 GAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACAGATGG-TTGCGGTAGCAAGACCGCCAGCTG
19878558 GTAG-
314 GTAGA
* * * * * * *
19878562 GGGGGATCGGGCCGGTCCCCGACTTACGCATTCTGCCTCTCC-GATCAGCTGAGCACCCGCACGC
1 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAG-TCGGCTGAGCACCCGCAAGC
* * *
19878626 TCGTTTCATGGGTTGGCTTAGGCATACAGG-GTTCATTCCATATCTAAG
65 TTGTTTCATGGGTTGACTTAGGCATAC-GGAGTTCATTCCATGTCTAAG
19878674 CATACAGAGT
Statistics
Matches: 348, Mismatches: 63, Indels: 37
0.78 0.14 0.08
Matches are distributed among these distances:
316 4 0.01
317 97 0.28
318 239 0.69
319 8 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (318 bp):
GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAGTCGGCTGAGCACCCGCAAGCT
TGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCGAACCGGACCGAGGG
TTGCGACAGCAGGACCGACAGCACGCAGGGAGGGACTGGGCTGATCCCCAGCTTGCACATTATGC
CTCTCCAGCCGATTCAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT
CCATGTCTAAGCCCCAGCCGGACAGATGGTTGCGGTAGCAAGACCGCCAGCTGGTAGA
Found at i:19878907 original size:26 final size:26
Alignment explanation
Indices: 19878857--19878908 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19878847 CAACTTAGGC
* * *
19878857 ATACGGAGTTCATCCCCAGTGTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
*
19878883 ATACGAAGTTCATTCCCAATCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
19878909 TCAGACCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGA
Found at i:19879201 original size:26 final size:26
Alignment explanation
Indices: 19879151--19879203 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19879141 GTTGGCTTAG
*
19879151 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
19879177 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
19879203 G
1 G
19879204 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:19879901 original size:26 final size:26
Alignment explanation
Indices: 19879872--19879924 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19879862 GTTGACTTAG
*
19879872 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
19879898 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19879924 G
1 G
19879925 ATTAGAGCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19881052 original size:26 final size:26
Alignment explanation
Indices: 19881022--19881074 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19881012 GTTGACTTAG
19881022 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
19881048 GCATATTGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19881074 G
1 G
19881075 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19881348 original size:159 final size:159
Alignment explanation
Indices: 19881055--19881551 Score: 449
Period size: 159 Copynumber: 3.1 Consensus size: 159
19881045 TAAGCATATT
* * * * ** *
19881055 GAGTTCATTCCCAGTCTAAG-ATCA-GACTGGATCGAGGGTTGTGGTAGCAGGATCG--GTAGCA
1 GAGTTCATT-CCAGTCTAAGCA-CAGGACCGGATCGAGGGTTGCGATAGCAGGACCGACAAAACA
* *
19881116 C-GCAGGGGGACCGGGCCGATCCCCGACTTG-TGCATTCTGCCTCTCCGATCAGCTGAGCGCCCG
64 CAG-AGGGGGACCGGGCCGATCCCCGACTTGCT-CATTCTGCCTCTCCGATCGGCTGAGCGCCTG
* * * *
19881179 CACACCCGTTTTGTGGGTTGGCTTAGGCATAGG
127 TACGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
* * * ** * **
19881212 GAGTTAATTCCATGTCTAAGCCCCA-G-CCGGATCGAGGGTTTCGATAGTGGGACCGGCAGCACA
1 GAGTTCATTCCA-GTCTAAG-CACAGGACCGGATCGAGGGTTGCGATAGCAGGACCGACAAAACA
* * *
19881275 CAGAGGGGGACCGGGCCGATCCCCGACTTGCTCATTATGCCTCTTCGATCGGCTCAGCGCCTGTA
64 CAGAGGGGGACCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGATCGGCTGAGCGCCTGTA
* * * **
19881340 CGCTCGTTTCATGGGTTGACTAATCCATATGG
129 CGCTCGTTTCGTGGGTTGGCTTAGGCATA-GG
* ** * * *
19881372 G-GTTCATTCCCAGTCTAAG-ATAGGATTGGATCGAGGGTTGCGGTAGCAGGATCGACAAAACAT
1 GAGTTCATT-CCAGTCTAAGCACAGGACCGGATCGAGGGTTGCGATAGCAGGACCGACAAAACAC
* * * *
19881435 AG-GAGGGGACCGGACCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGTA
65 AGAG-GGGGACCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGATCGGCTGAGCGCCTGTA
* **
19881499 CGCTCATTTCGTGGGTTGGCTTAGGCATACA
129 CGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
19881530 GAGTTCATTCCAAGTCTAAGCA
1 GAGTTCATTCC-AGTCTAAGCA
19881552 TACGGAGTTC
Statistics
Matches: 269, Mismatches: 56, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 38 0.14
158 8 0.03
159 211 0.78
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GAGTTCATTCCAGTCTAAGCACAGGACCGGATCGAGGGTTGCGATAGCAGGACCGACAAAACACA
GAGGGGGACCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGATCGGCTGAGCGCCTGTACG
CTCGTTTCGTGGGTTGGCTTAGGCATAGG
Found at i:19881559 original size:26 final size:26
Alignment explanation
Indices: 19881523--19881574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19881513 GTTGGCTTAG
19881523 GCATACAGAGTTCATT-CCAAGTCTAA
1 GCATACAGAGTTCATTCCCAA-TCTAA
*
19881549 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19881575 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19881661 original size:11 final size:11
Alignment explanation
Indices: 19881645--19881681 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
19881635 CCCAGGGCAC
19881645 CATCGCCAGAG
1 CATCGCCAGAG
19881656 CATCGCCAGAG
1 CATCGCCAGAG
*
19881667 CATCGCCGGAG
1 CATCGCCAGAG
19881678 CATC
1 CATC
19881682 ATCGGAGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.24, C:0.38, G:0.27, T:0.11
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:19885219 original size:158 final size:158
Alignment explanation
Indices: 19884759--19885461 Score: 609
Period size: 158 Copynumber: 4.4 Consensus size: 158
19884749 TAAGCATATA
* * * * *
19884759 GAGTTCATTCCCAATCTAAGATCAGA-CGGACCGAGGGTTGCGGCAACAGGATCGGCAGTACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * * * *
19884823 G-GAGGGACTGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCTGCATG
66 GAG-GGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACG
* ** *
19884887 CCCATTTTGTGGGTTCG-CTTAGGCATAGG
130 CTCATTTCATGGGTT-GACTTAGGCATACG
* * ** * *
19884916 GAGTTCATT-CCATGTCTAA-ACCCTAG-CCAGACCGAGGGTTGTGATAGCGGGACCGACAGCAC
1 GAGTTCATTCCCA-GTCTAAGA-TC-AGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* *
19884978 GCAGAAGGGGACCGGGGCAATCCCCAGCTTG-GACATTATGCCTCTCCGGTCGGCTCAGTGCCCG
63 GCAG-AGGGGACCGGGCCAATCCCCAGCTTGCG-CATTATGCCTCTCCGGTCGGCTCAGCGCCCG
* * *
19885042 CACGATCGTTTCATGGGTTGACTTAAGCATACG
126 CACGCTCATTTCATGGGTTGACTTAGGCATACG
* * * * *
19885075 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCCGTAGGATCGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * * *
19885140 GAGGGGACCGGGCCAATCCACAGCTTACGCATTCTGCCTCTACGGCCGGTTGAGCGCCCGCACGC
66 GAGGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGC
** *
19885205 TCATTTTGTGGGTTGGCTTAGGCATACG
131 TCATTTCATGGGTTGACTTAGGCATACG
** * * * * ** *
19885233 GAGTTCATT-CCATGTCTAAGCCCCAG-TC-GAACGAGGGTTGTGGCAGCGGGA-CTGGTAGTAC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-GACAGCAC
* * * * * ** * *
19885294 GCAGATGGGGATCGAGCCGATCCCCGGCTTGCTCATTATGCCTCTCCGGTTAGCTCAACGCCCGA
63 GCAGA-GGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGC
**
19885359 ACGCTTGTTTCATGGGTTGACTTAGGCATACG
127 ACGCTCATTTCATGGGTTGACTTAGGCATACG
** ** **
19885391 GAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGCAATAGGATCGACAGCACATA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
19885456 GAGGGG
66 GAGGGG
19885462 GATCCCCTGC
Statistics
Matches: 427, Mismatches: 99, Indels: 39
0.76 0.18 0.07
Matches are distributed among these distances:
156 5 0.01
157 49 0.11
158 218 0.51
159 149 0.35
160 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GAGGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGC
TCATTTCATGGGTTGACTTAGGCATACG
Found at i:19885392 original size:316 final size:315
Alignment explanation
Indices: 19884749--19885584 Score: 970
Period size: 316 Copynumber: 2.7 Consensus size: 315
19884739 ATCCCTAGTC
** * *
19884749 TAAGCATATAGAGTTCATTCCCAATCTAAGATCAGA-CGGACCGAGGGTTGCGGCAACAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCG
* * * **
19884813 GCAGTACGCAG-GAGGGACTGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAG
66 ACAGCACGCAGAG-GGGAC-GGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAG
* * * * * * *
19884877 CGCCTGCATGCCCATTTTGTGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAG
129 CGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* ** * *
19884942 CCAGACCGAGGGTTGTGATAGCGGGACCGACAGCACGCAGAAGGGGACCGGGGCAATCCCCAGCT
194 TC-GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCGAGCCAATCCCCAGCT
* * ** *
19885007 TGGACATTATGCCTCTCCGGTCGGCTCAGTGCCCGCACGATCGTTTCATGGGTTGACT
258 TGCACATTATGCCTCTCCGGTCAGCTCAACGCCCGAACGATCGTTTCATGGGTTGACT
* **
19885065 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCCGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCG
* * * * * *
19885130 ATAGCACGCAGAGGGGACCGGGCCAATCCACAGCTTACGCATTCTGCCTCTACGGCCGGTTGAGC
66 ACAGCACGCAGAGGGGA-CGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGC
19885195 GCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
130 GCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * ** * * * * *
19885260 CGAACGAGGGTTGTGGCAGCGGGACTGGTAGTACGCAGATGGGGATCGAGCCGATCCCCGGCTTG
195 CGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCGAGCCAATCCCCAGCTTG
* * * *
19885325 CTCATTATGCCTCTCCGGTTAGCTCAACGCCCGAACGCTTGTTTCATGGGTTGACT
260 CACATTATGCCTCTCCGGTCAGCTCAACGCCCGAACGATCGTTTCATGGGTTGACT
* * **
19885381 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGCAATAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCG
* * * * * *
19885446 ACAGCA--CATAGAGG--GGG---ATCCCCTGCTTGCACATTCTGTCTCTCCGGCCAGCTGATCG
66 ACAGCACGCAGAGGGGACGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCG
* * * * * *
19885504 CGCTCACGCTCGTTTTGTTGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCCCCAGCT
131 CCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-T
* *
19885569 GGACCAAGGGTTGTGG
195 CGACCGAGGGTTGTGG
19885585 TAGCATCACC
Statistics
Matches: 440, Mismatches: 76, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
308 89 0.20
309 14 0.03
311 3 0.01
314 6 0.01
316 194 0.44
317 132 0.30
318 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (315 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCG
ACAGCACGCAGAGGGGACGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCG
CCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCGAGCCAATCCCCAGCTTGC
ACATTATGCCTCTCCGGTCAGCTCAACGCCCGAACGATCGTTTCATGGGTTGACT
Found at i:19885745 original size:26 final size:26
Alignment explanation
Indices: 19885708--19885760 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19885698 GTTGACTTAG
19885708 GCATATGAAGTTCATCCCCAATCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
* * *
19885734 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
19885760 G
1 G
19885761 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAATCTAA
Found at i:19886219 original size:159 final size:156
Alignment explanation
Indices: 19885770--19886234 Score: 506
Period size: 158 Copynumber: 2.9 Consensus size: 156
19885760 GATCAGATCG
* * * * * * *
19885770 GACCGAGGGTAACGGCAGCAGGATCGACAGCATGC-AGGGGGATCAGGCCGATCCCTGACTTGCG
1 GACCGAGGGTTATGGCAGCGGGATCGGCAGCACGCAAGGCGGACCAGGCCGATCCCTGACTTGCG
** *
19885834 CATTCTGCCTCTCCGGTCGGCTGAGTTCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGT
66 CATTCTGCCTCTCCGGTCGGCTGAGCACCCA-ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG-
* * *
19885899 AGTTCATTCCATTTCTAAGCCCCAGCTG
129 AGTTCATTCCATGTCTAAGCCCCAACTA
* *
19885927 GACCGAGGGTTATGGCAGCGGGATCGGCAGCACGCAAGGGGGACCAGGCCGATCCCTGACTTGGG
1 GACCGAGGGTTATGGCAGCGGGATCGGCAGCACGCAAGGCGGACCAGGCCGATCCCTGACTTGCG
* * *
19885992 CATTCTACCTCTCCGATCGGATGAGCACCCGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCCGGTCGGCTGAGCACCC-AACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GG
19886057 AGTTCATTCCATGTCTAAGCCCCAACTA
129 AGTTCATTCCATGTCTAAGCCCCAACTA
* * * * * *
19886085 GACTGAGGGTTGTGGTAGTGGGA-CTGGCAGCACGCAGAGGCGGATC-GAGCCGATCCCTGGCTT
1 GACCGAGGGTTATGGCAGCGGGATC-GGCAGCACGCA-AGGCGGACCAG-GCCGATCCCTGACTT
* * * * * * * * *
19886148 GCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCATACGCTCATTTCGTGGGTTGACTTATGCATA
63 GCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCA-ACGCCCGTTTCGTGGGTTGGCTTAGGCATA
*
19886213 TAGAGTTCATTCCCA-GTCTAAG
127 -GGAGTTCATT-CCATGTCTAAG
19886235 ATCGGACCGG
Statistics
Matches: 262, Mismatches: 38, Indels: 14
0.83 0.12 0.04
Matches are distributed among these distances:
157 31 0.12
158 138 0.53
159 90 0.34
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GACCGAGGGTTATGGCAGCGGGATCGGCAGCACGCAAGGCGGACCAGGCCGATCCCTGACTTGCG
CATTCTGCCTCTCCGGTCGGCTGAGCACCCAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAG
TTCATTCCATGTCTAAGCCCCAACTA
Found at i:19887634 original size:158 final size:159
Alignment explanation
Indices: 19887252--19887655 Score: 449
Period size: 158 Copynumber: 2.5 Consensus size: 159
19887242 CCCGCATGCC
* * *
19887252 CGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGGTGGACCGATGG
1 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCA-GTGAACCGAGGG
* * * **
19887317 TT-CTGACAGCAGGACCGGCAGCACGCAGAGGGGGATCAGGCTGATCCCCGGCTTGTGCATTATG
65 TTACTGACAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCCAGGCTTACGCATTATG
** * * *
19887381 CCTCTCCAGCCGGTTGAGCGCCCGTACGCT
130 CCTCTCCAGCCGACTGAACGCCCGCACACT
* * ** ** * *
19887411 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAAATCAAATTGAACCTAGG
1 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCT-AAGCCCCAGTGAACCGAGG
* * * * * * *
19887475 GTTAC-GAGAGTAGGATCGACAGCATGTAG-GGGGGATCGGGCCGATCCCAGGCTTACGCATTTT
64 GTTACTGACAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCCAGGCTTACGCATTAT
19887538 GCCTCTCCAGCCGACTGAACGCCCGCACACT
129 GCCTCTCCAGCCGACTGAACGCCCGCACACT
* * *
19887569 TGTTTCGTGGGTTGGCTTAGTCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGT-GAACCGAGGG
*
19887634 TTA-TGGCAGCAGGACCGACAGC
65 TTACTGACAGCAGGACCGACAGC
19887656 GAGATCAGCA
Statistics
Matches: 196, Mismatches: 43, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 8 0.04
158 115 0.59
159 65 0.33
160 8 0.04
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTGAACCGAGGGT
TACTGACAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCCAGGCTTACGCATTATGC
CTCTCCAGCCGACTGAACGCCCGCACACT
Found at i:19887824 original size:26 final size:26
Alignment explanation
Indices: 19887773--19887825 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19887763 GTTGACTTAG
**
19887773 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
*
19887799 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
19887825 G
1 G
19887826 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAACCTAA
Found at i:19888798 original size:158 final size:158
Alignment explanation
Indices: 19888535--19888838 Score: 430
Period size: 158 Copynumber: 1.9 Consensus size: 158
19888525 GGACCGGGCC
* * * * *
19888535 GAGGGTTGTGGCAACAGGATCGGCAGCATACAGAAGGGACCAGGCCAATCCTCGACTTGCGCATT
1 GAGGGTTGTAGCAACAGGACCGACAGCACACAGAAGGGACCAGGCCAATCCCCGACTTGCGCATT
* * * * *
19888600 CTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTCGGCATAGGGAGTT
66 CTGCCTCTCCGGTCAGCTGAGCACCCGCACGCCCGCTTCGTGGGTTAGCTTAGGCATACGGAGTT
19888665 CATTCCATGTCTAAGCCCCAGCTGAACT
131 CATTCCATGTCTAAGCCCCAGCTGAACT
* * * *
19888693 GAGGGTTGTAGCAGCAGGACCGACAGCACACAGAGGGGACCAGGTCGATCCCCGACTTGCGCATT
1 GAGGGTTGTAGCAACAGGACCGACAGCACACAGAAGGGACCAGGCCAATCCCCGACTTGCGCATT
* * * *
19888758 CTGCCTTTTCGGTC-GACTGAGCACCCGTACGCTCGCTTCGTGGGTTAGCTTAGGCATACGGAGT
66 CTGCCTCTCCGGTCAG-CTGAGCACCCGCACGCCCGCTTCGTGGGTTAGCTTAGGCATACGGAGT
19888822 TCATTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
19888839 ATACGGAGTT
Statistics
Matches: 127, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
157 1 0.01
158 126 0.99
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GAGGGTTGTAGCAACAGGACCGACAGCACACAGAAGGGACCAGGCCAATCCCCGACTTGCGCATT
CTGCCTCTCCGGTCAGCTGAGCACCCGCACGCCCGCTTCGTGGGTTAGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCTGAACT
Found at i:19888840 original size:26 final size:26
Alignment explanation
Indices: 19888811--19888863 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19888801 GTTAGCTTAG
19888811 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19888837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19888863 G
1 G
19888864 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19889946 original size:159 final size:158
Alignment explanation
Indices: 19889574--19889989 Score: 396
Period size: 159 Copynumber: 2.6 Consensus size: 158
19889564 CTAAGCATAT
* * * *
19889574 GGAGTTCATTCCCAGTCTCAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCATGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGT
* * * * * * *
19889639 AGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGTCTCTCCGATCGGCTGAGTGTCCATACA
66 AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGTCTCTCCGATCGGCTCAGCGGCCACACA
* * * *
19889704 CCCGTTTCATGGGTTGGCTTAGGCATAG
131 CCCATTTCATGGCTTGACTTAGGCAGAG
* ** * * * * *
19889732 AGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAAC-GAGATCGATAGCA
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAG-GATCGACAGCA
** *
19889794 TGTAGAGGGGGATCAAGTCGATCCCCGGCTTGTGCATTATG-C-CATACCGATCGGCTCAGCGGC
63 TGTAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGTCTC-T-CCGATCGGCTCAGCGGC
* **** *
19889857 CGCATGTTCATTTCGTGGCTTGACTTAGGC-GAG
125 CACACACCCATTTCATGGCTTGACTTAGGCAGAG
* *
19889890 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
1 -GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATG
*
19889955 TAGGGGGGACCGGGTCCG-TCCCCGGCTTGCGCATT
65 TAGGGGGGATCGGGT-CGATCCCCGGCTTGCGCATT
19889990 CTGCTTATCC
Statistics
Matches: 201, Mismatches: 46, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 77 0.38
159 115 0.57
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGT
AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGTCTCTCCGATCGGCTCAGCGGCCACACA
CCCATTTCATGGCTTGACTTAGGCAGAG
Done.