Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 184 of 402
Found at i:19890052 original size:158 final size:158
Alignment explanation
Indices: 19889568--19890071 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 158
19889558 CCTAGTCTAA
* * * *
19889568 GCATATGGAGTTCATTCCCAGTCTCAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * *
19889633 GCATGCAGGGGGGATCGGG-CCAATCCCCGGCTTGCGCATTCTG-TCTCTCCGATCGGCTGAGTG
66 GCATGTAGGGGGGATCGGGTCC-GTCCCCGGCTTGCGCATTCTGCT-TATCCGATCGGCTGAGCG
*** *
19889696 -TC-CATACACCCGTTTCATGGGTTGGCTTAG
129 CTCGCAT--GTTCGTTTCGTGGGTTGGCTTAG
** * * * *
19889726 GCATA-GAGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAAC-GAGATC
1 GCATACG-GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAG-GATC
* ** * * *
19889787 GATAGCATGTAGAGGGGGATCAAGT-CGATCCCCGGCTTGTGCATTATGC-CATACCGATCGGCT
62 GACAGCATGTAG-GGGGGATCGGGTCCG-TCCCCGGCTTGCGCATTCTGCTTAT-CCGATCGGCT
* * * *
19889850 CAGCGGC-CGCATGTTCATTTCGTGGCTTGACTTAG
124 GAGC-GCTCGCATGTTCGTTTCGTGGGTTGGCTTAG
* *
19889885 GCGA-GCGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGAC
1 GC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
19889949 AGCACGTAGGGGGGACCGGGTCCGTCCCCGGCTTGCGCATTCTGCTTATCCG-GCTGGTTGAACG
65 AGCATGTAGGGGGGATCGGGTCCGTCCCCGGCTTGCGCATTCTGCTTATCCGATC-GGCTGAGCG
*
19890013 CTCGCATGTTCGTTTTGTGGGTTGGCTTAG
129 CTCGCATGTTCGTTTCGTGGGTTGGCTTAG
*
19890043 GCATACGGAGTTCATTCCTAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
19890072 TAGATTGGAT
Statistics
Matches: 271, Mismatches: 53, Indels: 44
0.74 0.14 0.12
Matches are distributed among these distances:
157 9 0.03
158 139 0.51
159 112 0.41
160 8 0.03
161 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCATGTAGGGGGGATCGGGTCCGTCCCCGGCTTGCGCATTCTGCTTATCCGATCGGCTGAGCGCT
CGCATGTTCGTTTCGTGGGTTGGCTTAG
Found at i:19890427 original size:26 final size:26
Alignment explanation
Indices: 19890397--19890449 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19890387 GTTGACTTAG
19890397 GCATAC-GAAGTTCA-TCCCAAGTCTAA
1 GCATACAG-AGTTCATTCCC-AGTCTAA
19890423 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19890449 G
1 G
19890450 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19890937 original size:26 final size:26
Alignment explanation
Indices: 19890901--19890951 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19890891 TGGCTTGGGT
19890901 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
19890927 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19890952 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19891441 original size:26 final size:26
Alignment explanation
Indices: 19891411--19891463 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19891401 GTTGGCTTAG
19891411 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
19891437 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19891463 G
1 G
19891464 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19892062 original size:160 final size:161
Alignment explanation
Indices: 19891797--19892121 Score: 469
Period size: 160 Copynumber: 2.0 Consensus size: 161
19891787 AAAATCTTCT
** * * *
19891797 CCACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATAAAAGTATCACCTCTACC
1 CCACTTCGAGTTTTTAGCTAAATTTTTTCATGCATGCCAAAAAAAATAAAAGGATCACCTCTACA
*
19891862 AAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTTGAACCGTAAAACA-TTTCAA
66 AAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAA-AGTTTCAA
*
19891926 AAATCTTGAAAAATAGAAAACGGGTCATCTTG
130 AAATCATGAAAAATAGAAAACGGGTCATCTTG
* * *
19891958 CCACTTCGAGTTTTTAGCTGAA-TTTTTCATGCAT-CCTAAAAAAAATACAAGGATCATCTCTAC
1 CCACTTCGAGTTTTTAGCTAAATTTTTTCATGCATGCC-AAAAAAAATAAAAGGATCACCTCTAC
* *
19892021 AAAATTTTGGGG-CAAAACTCTTTCTAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTA
65 AAAA-TTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
* *
19892085 AAAATCATGAAAAATAGAAAATGGGTCGTCTTG
129 AAAATCATGAAAAATAGAAAACGGGTCATCTTG
19892118 CCAC
1 CCAC
19892122 GAAACTTCAC
Statistics
Matches: 147, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
159 3 0.02
160 116 0.79
161 28 0.19
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.30
Consensus pattern (161 bp):
CCACTTCGAGTTTTTAGCTAAATTTTTTCATGCATGCCAAAAAAAATAAAAGGATCACCTCTACA
AAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGGGTCATCTTG
Found at i:19892797 original size:158 final size:157
Alignment explanation
Indices: 19892337--19892993 Score: 615
Period size: 158 Copynumber: 4.1 Consensus size: 157
19892327 TTAAGCACGT
** * *
19892337 GGAGTTCATTCCCAGTCTAAGATC-AGACTGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
* * * * * * **
19892401 CAGGGGGGATCGGG-TCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCTGAGCGCCTACA
64 CAGGGGGGATCGGGCT-GATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGTA
*
19892465 CGC-CTGTTTCATGGGTTGGCTTAGGCATAG
128 CGCTC-GTTTCATGGGTTGGCTTAGGCATAC
* * * * ** * * * *
19892495 GGAGTTCATTCCATGTCTAAG-TCCTAGCCGGACCTAGGGTTATGGCAGCGGGACCGACAACACG
1 GGAGTTCATTCCA-GTCTAAGAT-CGAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
* * ** * * * * *
19892559 CAGAGGGGGACCGGGCCGATCCCTTGCTTACGCATTATGCCTCTCTGACCGGCTCAGCACCCGTA
64 CAG-GGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGTA
*
19892624 CGCTCGTTTCATGGGTTGACTTAGGCATAC
128 CGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * *
19892654 GGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAAGATCGACAGTAAGC
1 GGAGTTCATTCC-AGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
* * * *
19892719 AGGGGGGATCGGGCTGGTCCCCGACTTACGCATTTTGCCTCTCCGACCGGCTGAGTGCCTGTACG
65 AGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGTACG
**
19892784 CTCGTTTTGTGGGTTGGCTTAGGCATAC
130 CTCGTTTCATGGGTTGGCTTAGGCATAC
19892812 GGAGTTCATTCACAGTCTAAGATTCG-ACCAGACCGAGGGTTACGGTAGCAGGACCAGTAGCAGG
1 GGAGTTCATTC-CAGTCTAAGA-TCGAACCAGACCGAGGG-T----T-GC--GA-C---AGCAGG
* * * * *
19892876 ATCGGCAGCATGCAAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGT
52 ATCGACAGCACGC-AGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGC
* *
19892941 TGAGCATCC-GTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
116 TGAGC-GCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC
19892983 GGAGTTCATTC
1 GGAGTTCATTC
19892994 TATGTCAAAG
Statistics
Matches: 406, Mismatches: 69, Indels: 35
0.80 0.14 0.07
Matches are distributed among these distances:
157 4 0.01
158 159 0.39
159 125 0.31
160 3 0.01
163 1 0.00
164 2 0.00
166 2 0.00
167 1 0.00
170 15 0.04
171 92 0.23
172 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
GGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGTACGC
TCGTTTCATGGGTTGGCTTAGGCATAC
Found at i:19893017 original size:171 final size:171
Alignment explanation
Indices: 19892719--19893037 Score: 430
Period size: 171 Copynumber: 1.9 Consensus size: 171
19892709 GACAGTAAGC
* *
19892719 AGGGGGGATCGGGCTGGTCCCCGACTTACGCATTTTGCCTCTCCGACCGGCTGAGTGCCTGTACG
1 AGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCCTGTACG
* * ** *
19892784 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATTCGACCAGACCGAG
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCAAAGACCCAACCAGACCGAG
*
19892849 GGTTACGGTAGCAGGACCAGTAGCAGGATCGGCAGCATGCA
131 GGTTACGGCAGCAGGACCAGTAGCAGGATCGGCAGCATGCA
* * * *
19892890 AGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCAT-CC-GTA
1 AGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAG--TGCCTGTA
* *
19892953 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTA-TGTCAAAG-CCCAAGTCAGAC
64 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-ACAGTCAAAGACCCAA-CCAGAC
**
19893016 CGAGGGTTGTGGCAGCAGGACC
127 CGAGGGTTACGGCAGCAGGACC
19893038 GATAGTGGAA
Statistics
Matches: 128, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
170 2 0.02
171 122 0.95
172 3 0.02
173 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (171 bp):
AGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCCTGTACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCAAAGACCCAACCAGACCGAG
GGTTACGGCAGCAGGACCAGTAGCAGGATCGGCAGCATGCA
Found at i:19893056 original size:171 final size:170
Alignment explanation
Indices: 19892717--19893102 Score: 424
Period size: 171 Copynumber: 2.3 Consensus size: 170
19892707 TCGACAGTAA
* * * *
19892717 GCAGGGGGGATCGGGCTGGTCCCCGACTTACGCATTTTGCCTCTCCGACCGGCTGAGTGCCTGTA
1 GCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCTGTA
* * ** *
19892782 CGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATTCGACCAGACCG
66 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCAAAGACCCAACCAGACCG
* *
19892847 AGGGTTACGGTAGCAGGACCAGTAGCAGGATCGGCAGCAT
131 AGGGTTACGGCAGCAGGACCAGTAGCAGGATCGGCAGCAC
* * *
19892887 GCAAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCAT-CC-
1 GC-AGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAG--TGCCT
* *
19892950 GTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTA-TGTCAAAG-CCCAAGTCA
63 GTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-ACAGTCAAAGACCCAA-CCA
** * *
19893013 GACCGAGGGTTGTGGCAGCAGGACC-GATAG-TGGAATTGGCAGCAC
126 GACCGAGGGTTACGGCAGCAGGACCAG-TAGCAGG-ATCGGCAGCAC
* * * * * *
19893058 GCAGAGGGGGACCGAGTTGATCCCCAGCTTGTGCACTATGCCTCT
1 GCAG-GGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
19893103 TCGGTAAGCC
Statistics
Matches: 182, Mismatches: 26, Indels: 15
0.82 0.12 0.07
Matches are distributed among these distances:
170 9 0.05
171 169 0.93
172 3 0.02
173 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (170 bp):
GCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCTGTA
CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCAAAGACCCAACCAGACCG
AGGGTTACGGCAGCAGGACCAGTAGCAGGATCGGCAGCAC
Found at i:19893475 original size:159 final size:158
Alignment explanation
Indices: 19893243--19893530 Score: 393
Period size: 159 Copynumber: 1.8 Consensus size: 158
19893233 TGCGGTAGCA
* * * * *
19893243 GGATCGACAGCATGCAGGGGGGACCGGACCGATCTCTGGCTTGCGCATTCTGCCTCTCCGACCGA
1 GGATCGACAGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGA
** * *
19893308 TTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTTATT-CCATGTCTAAG
66 TTGAGCACCCAAACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCA-GTCTAAG
19893372 CCCCAGCCAGACCGAGGGTTGTGGCATCG
130 CCCCAGCCAGACCGAGGGTTGTGGCATCG
*
19893401 GGATCGACAGCACGCAGAGGGGGACC-GAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGTCC
1 GGATCGACAGCACGCAG-GGGGGACCGGA-CCGATCCCCGGCTTGCACATTATGCCTCTCCGACC
* * * *
19893465 GGCTT-AGCACCCAAACGCTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTA
64 -GATTGAGCACCCAAACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTA
19893529 AG
128 AG
19893531 ATCGAACCAG
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
158 18 0.16
159 88 0.79
160 6 0.05
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.23
Consensus pattern (158 bp):
GGATCGACAGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGA
TTGAGCACCCAAACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGC
CCCAGCCAGACCGAGGGTTGTGGCATCG
Found at i:19893700 original size:26 final size:26
Alignment explanation
Indices: 19893650--19893702 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19893640 GTTGGCTTAG
*
19893650 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
19893676 GCATAC-GAAGTTCATTCCCA-ATCTAA
1 GCATACAG-AGTTCATT-CCATATCTAA
19893702 G
1 G
19893703 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:19894180 original size:26 final size:26
Alignment explanation
Indices: 19894150--19894202 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19894140 GTTGGCTTAG
*
19894150 GCATATAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
**
19894176 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19894202 G
1 G
19894203 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19894375 original size:26 final size:26
Alignment explanation
Indices: 19894346--19894398 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19894336 GTTGGCTTAG
*
19894346 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19894372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19894398 G
1 G
19894399 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19894568 original size:184 final size:181
Alignment explanation
Indices: 19893993--19894583 Score: 616
Period size: 184 Copynumber: 3.2 Consensus size: 181
19893983 GTTGACTTAG
* * * * * *
19893993 GCATGCGGAGTTCATTCCCAATCTAAGATCAGACCAGACT-GAGCGTTGCGATAGCAGAATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * ** * * *
19894057 AGCAGGATAGGTGGGACCAGGCCGATCTTCGGCTTATGCA-TCTACCTCTCCGACCGGCTAAGCG
65 AGCACG-CAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCCG-CCGGCTGAGCG
* *
19894121 TCCC-ACGCTCGTTTCATGGGTTGGCTTAGGCATATAAAGTTCATTCCATGTCTAA
128 -CCCGACGCTCGTTTCGT-GGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAA
* * *
19894176 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTGTGGCAGCAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ATCGAGGGTTGCGGTAGCA-G----G-
* *
19894240 AGCAAGATCAGCAGCAAGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGTATTTTGCCTCTCCGG
59 ATC--GA-CAGCA-C--GCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCC-G
** * * * *
19894305 TTGGCTGAGCACCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGATTTCATTCCATGTCT
117 CCGGCTGAGCGCCCG-ACGCTCGTTTCGT-GGTTGGCTTAGGCATATGAAGTTCATTCCATGTCT
19894370 AA
180 AA
19894372 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGTAGCAGGATCGACA
* * *
19894437 GCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCAGCCGACTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCC-GCCGGCTGAGCGCC
* *
19894502 CGTACGTTCGTTTCGTGGATTGGCTTAGGCATATGAAGTTCATTCCATTTCTAA
130 CG-ACGCTCGTTTCGTGG-TTGGCTTAGGCATATGAAGTTCATTCCATGTCTAA
*
19894556 GCATATGGAGTTCATT-CCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
19894584 TTTGAGCCAC
Statistics
Matches: 339, Mismatches: 49, Indels: 40
0.79 0.11 0.09
Matches are distributed among these distances:
181 1 0.00
183 59 0.17
184 114 0.34
186 1 0.00
187 5 0.01
188 2 0.01
189 2 0.01
190 2 0.01
191 3 0.01
192 5 0.01
194 29 0.09
195 18 0.05
196 97 0.29
197 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (181 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCCGCCGGCTGAGCGCCC
GACGCTCGTTTCGTGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAA
Found at i:19895293 original size:26 final size:26
Alignment explanation
Indices: 19895241--19895293 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19895231 GTTGACTTAG
**
19895241 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
*
19895267 GCATACGGAGTTTATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
19895293 G
1 G
19895294 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:19895614 original size:26 final size:26
Alignment explanation
Indices: 19895584--19895636 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19895574 GTTGACTTAT
19895584 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
19895610 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19895636 G
1 G
19895637 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19896131 original size:354 final size:344
Alignment explanation
Indices: 19895213--19896319 Score: 1057
Period size: 354 Copynumber: 3.2 Consensus size: 344
19895203 GCTGAGTGCC
* * *
19895213 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTTTAAGCATACGGAGT
1 CGCACGCTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATCCCCAGTCTAAGCATAC-GAGT
* * * * * * *
19895278 TTATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGGTC-GCACGTAGGG
65 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATC-GACAGCACGTAGGG
* * * * * * * *
19895342 GGGATTGGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCCGACCTGCTGAGTGCCCGCACGCCCA
129 GGGACTGGGTCGATCCCTGGCTTGCACATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCCCG
* *
19895407 TTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGACCGAGGGT
194 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGAGGGT
* * * * * *
19895471 TGTGGC--AGCGGGACTGGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCCTGTGCATTATG
258 TGTGGCAGAGCAGCACTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACCTGCGCATTATG
* *
19895534 CCTCCCCGACCGGTTCAGCGCC
323 CCTCCCCGACCGGGTCAGCGCA
* * * *
19895556 CGTACGCTCGTTTCATGGGTTGACTTA-TGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGA
1 CGCACGCTCGTTTCGTGGGTTGACTTAGT-CATACGGAGTTCATCCCCA-GTCTAAGCATA-CGA
* *
19895619 GTTCATTCCCAGTCTAAGATCGGGCCAGACCGAGGGTTGCGGCAGCAGGACCAGCAGGAGGATCG
63 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT------GC-GG--TAGC---AGGATCG
* ** * * * *
19895684 ACAGCACGCAGGGGGGACCAGGTCAATCTCTGACTTGCACATTCTACCTCTCCGGCCGGTTGAGC
116 ACAGCACGTAGGGGGGACTGGGTCGATCCCTGGCTTGCACATTCTACCTCTCCGACCGGTTGAGC
* * ** * * *
19895749 GCCCGCATGCTCGTTTTGTGGCTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGC
181 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
19895814 TAGACCGAGGGTTGTGGCAGAATGACTAGCAGTGGGATCGGCTACATGCAGAGGGGGACCGGG-C
246 TGGACCGAGGGTTGTGGCAG-A-G-C-AGCACT-GG--CAGC-AC--GCAGAGGGGGACCGGGTC
* * * * *
19895878 TGATCCCCGACTTGCGTATTATGCCTCTCCGACTGGGTGAGCGCA
301 -GATCCCCGACCTGCGCATTATGCCTCCCCGACCGGGTCAGCGCA
* * * *
19895923 TGCACGCTCATTTCGTGGGTTGACTTAGTCATACGAAGTTCATCCCCAATCTAAGCATACGAGTT
1 CGCACGCTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATCCCCAGTCTAAGCATACGAGTT
* * *
19895988 CATTCCCAATATAATATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGG
66 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGG
* * * *
19896053 GACTGGG-CTGATCCCCGGCTTGCTCATTCTACCTCTCCGATCGGTTGAGCGCCCGCACACCCGT
131 GACTGGGTC-GATCCCTGGCTTGCACATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCCCGT
* * **
19896117 TTCATGGGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTG
195 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTG
* * * * * * ** * * *
19896182 TGGCAGTG--GGACTGGCAGCATGCAGAGGGGGATCGGGCCAATAGCTGGCTTGCGCATTATGCC
260 TGGCAGAGCAGCACTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACCTGCGCATTATGCC
** * * *
19896245 TCTTCGACCGGCTCAACGCC
325 TCCCCGACCGGGTCAGCGCA
* *
19896265 CGCACACTCGTTTCGTGGGTTGACTTA-TGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCACGCTCGTTTCGTGGGTTGACTTAGT-CATACGGAGTTCATCCCCAGTCTAAG
19896320 ATCAGACTGG
Statistics
Matches: 613, Mismatches: 116, Indels: 71
0.77 0.14 0.09
Matches are distributed among these distances:
341 1 0.00
342 96 0.16
343 85 0.14
344 1 0.00
345 3 0.00
347 2 0.00
348 3 0.00
349 2 0.00
350 1 0.00
352 3 0.00
353 1 0.00
354 134 0.22
355 124 0.20
356 1 0.00
357 3 0.00
358 1 0.00
359 3 0.00
360 3 0.00
361 3 0.00
362 2 0.00
364 3 0.00
365 2 0.00
366 37 0.06
367 95 0.15
368 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (344 bp):
CGCACGCTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATCCCCAGTCTAAGCATACGAGTT
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGG
GACTGGGTCGATCCCTGGCTTGCACATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCCCGTT
TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGT
GGCAGAGCAGCACTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACCTGCGCATTATGCCT
CCCCGACCGGGTCAGCGCA
Found at i:19896595 original size:11 final size:11
Alignment explanation
Indices: 19896581--19896605 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
19896571 ACCATCGTCA
19896581 GAGCATCATCG
1 GAGCATCATCG
19896592 GAGCATCATCG
1 GAGCATCATCG
19896603 GAG
1 GAG
19896606 AGCCTCACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.32, T:0.16
Consensus pattern (11 bp):
GAGCATCATCG
Found at i:19898429 original size:159 final size:156
Alignment explanation
Indices: 19898207--19898502 Score: 369
Period size: 159 Copynumber: 1.9 Consensus size: 156
19898197 TAGCACGTAG
* * * *
19898207 GGGGGATCGAGCCGATCCCCGGCTTGTGCATTCCGCCTCTCCGATCGGCTGAGCGCCCGCACGC-
1 GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCCGCCTCTCCGATCGGCTGAGCACCCCCACGCT
* * *** * * *
19898271 CTGTTTTGTGGGTTTTTTTTGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGG
66 C-ATTTCGTGGGTTGGCTTAGACATACGGAATTC---CCATGTCTAAGCCCCAGCCGGACCAAGG
*
19898336 GTTGTGGCAGCGAGATCGACAGCATGCAGA
127 GTTATGGCAGCGAGATCGACAGCATGCAGA
** * *
19898366 GGGGGACCGAGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCCCACGCT
1 GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCCGCCTCTCCGATCGGCTGAGCACCCCCACGCT
* * *
19898431 CATTTCGTGGGTTGGCTTAGGCATACTGAATTCCCATGTCTAAGCCCCAGCCGGACCGAGGGTTA
66 CATTTCGTGGGTTGGCTTAGACATACGGAATTCCCATGTCTAAGCCCCAGCCGGACCAAGGGTTA
19898496 TGGCAGC
131 TGGCAGC
19898503 AGGACCGGTA
Statistics
Matches: 116, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
156 37 0.32
159 78 0.67
160 1 0.01
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.23
Consensus pattern (156 bp):
GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCCGCCTCTCCGATCGGCTGAGCACCCCCACGCT
CATTTCGTGGGTTGGCTTAGACATACGGAATTCCCATGTCTAAGCCCCAGCCGGACCAAGGGTTA
TGGCAGCGAGATCGACAGCATGCAGA
Found at i:19898669 original size:26 final size:25
Alignment explanation
Indices: 19898619--19898670 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
19898609 GTTGACTTAG
*
19898619 GCATAGGAGTTCATCCCTAGTCTAA
1 GCATAGGAGTTCATCCCTAGCCTAA
19898644 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATA-GGAGTTCA-TCCCTAGCCTAA
19898670 G
1 G
19898671 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 5 0.21
26 15 0.62
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATAGGAGTTCATCCCTAGCCTAA
Found at i:19899150 original size:26 final size:26
Alignment explanation
Indices: 19899120--19899172 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19899110 GTTGGCTTAG
19899120 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
19899146 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19899172 G
1 G
19899173 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19899708 original size:26 final size:26
Alignment explanation
Indices: 19899672--19899724 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19899662 GTTAGCTTAG
*
19899672 GCATACGGAGTTCGTTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
19899698 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19899724 G
1 G
19899725 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19900102 original size:26 final size:26
Alignment explanation
Indices: 19900054--19900106 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19900044 GTTGACTTAG
*
19900054 GCATACGGAGTTCATCACTAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
19900080 GCATACGGAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCA-TCACCAGTCTAA
19900106 G
1 G
19900107 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:19900606 original size:26 final size:26
Alignment explanation
Indices: 19900556--19900608 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19900546 GTTGGCTTAG
* *
19900556 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
19900582 GCATACGAAGTTCATTCC-TAATCTAA
1 GCATACGAAGTTCATTCCAT-ATCTAA
19900608 G
1 G
19900609 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:19901315 original size:26 final size:26
Alignment explanation
Indices: 19901273--19901328 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
19901263 TGTGTTGGCT
* *
19901273 TAAGCATATGGATTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
19901299 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19901325 TAAG
1 TAAG
19901329 AGTTTGAGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19902024 original size:26 final size:26
Alignment explanation
Indices: 19901995--19902047 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19901985 GTTGACTTAG
*
19901995 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
* *
19902021 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
19902047 G
1 G
19902048 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:19902404 original size:158 final size:157
Alignment explanation
Indices: 19902021--19902413 Score: 405
Period size: 158 Copynumber: 2.5 Consensus size: 157
19902011 CCCAGTCTAA
* * * * * * * *
19902021 GCATATGGAGTTCATTCACAGTCTAAGATCAGACCGAACCGAAGGTTACAGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
19902086 GCACGCAGGGGGGACCGGGCCAATCCCCAACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
65 GCACGCAGGGGGGACCAGGCCAATCCCCAACTTGCGCATTATACCTCTTCGGCCGGCTCAACGCC
* **
19902151 CGCACGCTCATTTCATGGATTGGCTTAG
130 CGCACGCTCATTTCATGGAGTAACTTAG
* ** * * * * *
19902179 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCTGACCGAGGGTTGTGGCAGCGGGA-CCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGCGGCAGCAGGATCGA-
* * * *** * *
19902242 CAGCACGCAGAGGGGGATCAGGTCGATCCCTGGCTTGTGCATTATACCTCTTCGGTCGGCTCAAC
63 CAGCACGCAG-GGGGGACCAGGCCAATCCCCAACTTGCGCATTATACCTCTTCGGCCGGCTCAAC
*
19902307 GCCCGCACGCTCGTTTCATGG-GTAACTTAG
127 GCCCGCACGCTCATTTCATGGAGTAACTTAG
19902337 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCGGCAGCAGGATCGACA
*
19902402 GCACGTAGGGGG
65 GCACGCAGGGGG
19902414 ATCGAGTCGG
Statistics
Matches: 187, Mismatches: 41, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 12 0.06
158 106 0.57
159 69 0.37
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGACCAGGCCAATCCCCAACTTGCGCATTATACCTCTTCGGCCGGCTCAACGCCC
GCACGCTCATTTCATGGAGTAACTTAG
Found at i:19902532 original size:128 final size:127
Alignment explanation
Indices: 19902293--19902525 Score: 351
Period size: 128 Copynumber: 1.8 Consensus size: 127
19902283 TTATACCTCT
* * *
19902293 TCGGTCGGCTCAACGCCCGCACGCTCGTTTCATGGGTAACTTAGGCATACGGAGTTCATTCCCAG
1 TCGGCCGGCTCAACACCCGCACGCTCGTTTCATGGGTAACTTAGGCATACGGAATTCATTCCCAG
*
19902358 TCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGATCGAG
66 TCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTAGGGGGATCGAG
* * **
19902420 TCGGCCGGCTCAACACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAATTCATTCCCA
1 TCGGCCGGCTCAACACCCGCACGCTCGTTTCATGGG-TAACTTAGGCATACGGAATTCATTCCCA
* *
19902485 GTCTAAGATCGGATC-GGACCGAGGGTTGTGGCAGCAGGACC
65 GTCTAAGATCAGA-CAGGACCGAGGGTTGCGGCAGCAGGACC
19902526 AGCAGCAGGA
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
127 32 0.34
128 61 0.65
129 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.21
Consensus pattern (127 bp):
TCGGCCGGCTCAACACCCGCACGCTCGTTTCATGGGTAACTTAGGCATACGGAATTCATTCCCAG
TCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTAGGGGGATCGAG
Found at i:19902633 original size:26 final size:26
Alignment explanation
Indices: 19902596--19902648 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19902586 ACTGACTTAG
*
19902596 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19902622 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19902648 G
1 G
19902649 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19902975 original size:26 final size:26
Alignment explanation
Indices: 19902939--19902991 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19902929 GTTTGCTTAG
19902939 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19902965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19902991 G
1 G
19902992 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19903078 original size:11 final size:11
Alignment explanation
Indices: 19903062--19903093 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
19903052 CCGGGTCACC
19903062 ATCGCCGGAGG
1 ATCGCCGGAGG
19903073 ATCGCCGGAGG
1 ATCGCCGGAGG
*
19903084 ATCGTCGGAG
1 ATCGCCGGAG
19903094 AGCTTAACCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.25, G:0.44, T:0.12
Consensus pattern (11 bp):
ATCGCCGGAGG
Found at i:19903445 original size:26 final size:26
Alignment explanation
Indices: 19903409--19903461 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19903399 GTTGGCTTAG
19903409 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19903435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19903461 G
1 G
19903462 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19903817 original size:26 final size:26
Alignment explanation
Indices: 19903788--19903840 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19903778 GTTGACTTAG
19903788 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19903814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19903840 G
1 G
19903841 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19904313 original size:158 final size:157
Alignment explanation
Indices: 19903814--19904314 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 157
19903804 CCCAGTCTAA
* * ** *
19903814 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGGCAATAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTGTGGCAGCAGGATCGATA
** * * * * *
19903879 GCACGCAAAGGGGATCGGGTCGAT-TCTCGGCTTGTGCATTCTGCGTCTCCGACT-GACTGAGCG
66 GCACGCAGGGGGGACCGGGTCGATCCCT-GGCTT-TGCATTCTGCCTCTCC-AGTAGGCTGAGCG
**
19903942 CCCGCATGGCT-GTTTCATGGGTTGGCTTAG
128 CCCG-AACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
19903972 GCATAGGGAGTTCATT-CCATGTCT-AGACCCTAGCCAGAACGAGGGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCGAACCAGAACGAGGGTTGTGGCAGCAG-GATCG
** * * * * * * * *
19904034 ATAGCACATAGAGGCGAACCGGGTCGATCCCTGGCTTGGCATTATGCCTCTCCGGCCA-GCTCAA
63 ATAGCACGCAG-GGGGGACCGGGTCGATCCCTGGCTTTGCATTCTGCCTCTCCAG-TAGGCTGAG
* *
19904098 CGCCCGAACACTCGTTTCATGGGTTGACTTAG
126 CGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * ** * *
19904130 ACATACTGAGCTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTGTGGCAGCAGGATCGATA
* * *
19904195 GCATGCAGGGGGGACCAGGTCGATCCCTGGCTTATGCATTCTACCTCTCCAGTAGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCTGGCTT-TGCATTCTGCCTCTCCAGTAGGCTGAGCGCC
*
19904260 CGTACGCTCGTTTCATGGGTTGGCTTAG
130 CGAACGCTCGTTTCATGGGTTGGCTTAG
19904288 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
19904315 CATACGGAGT
Statistics
Matches: 263, Mismatches: 66, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
157 36 0.14
158 201 0.76
159 24 0.09
160 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGGGTCGATCCCTGGCTTTGCATTCTGCCTCTCCAGTAGGCTGAGCGCCC
GAACGCTCGTTTCATGGGTTGGCTTAG
Found at i:19904318 original size:26 final size:26
Alignment explanation
Indices: 19904288--19904340 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19904278 GTTGGCTTAG
19904288 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19904314 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19904340 G
1 G
19904341 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19904533 original size:26 final size:26
Alignment explanation
Indices: 19904497--19904549 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19904487 GTTGATTTAG
*
19904497 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
19904523 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19904549 G
1 G
19904550 ATCAGATCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19905943 original size:26 final size:26
Alignment explanation
Indices: 19905906--19905958 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19905896 GCTGGCTTAG
*
19905906 GCATACGGAGTTCATTCCGT-GTCTAA
1 GCATACGAAGTTCATTCC-TAGTCTAA
19905932 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
19905958 G
1 G
19905959 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:19906116 original size:183 final size:182
Alignment explanation
Indices: 19905744--19906287 Score: 570
Period size: 183 Copynumber: 3.0 Consensus size: 182
19905734 TGGGTTGACT
* * * **
19905744 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACCGAGGGTTACAGCAGCAATATCG
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCG-ACCGAGGGTTGCGGCAGCAGGATCG
* * * *
19905809 ACAGCACGTAGGTGGGGACCGGGCCAATCCCTGGCTTGCTCATTCTGCCTCTCCGACCGACTGAG
65 ACAGCACGCAGG-GGGGACCGGG-CGATCCCCGGCTTGCTCATTCTACCTCTCCGACCGACTGAG
* * * ** * ***
19905874 CGCCCGCGCGCTCGTTTCGTGGGCTGGCTTAGGCATACGGAGTTCATTCCGTGTC
128 CGCCCGCACGCTCGTTGCGGGGGCTAACTTAGGCATACGGAGTTCATCCCCAATC
* * * * *
19905929 TAAGCATACGAAGTTCATTCCTAGTCTAAGATTGGATCAGACCGAAGGTTGCGGTACCAGGATAG
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATC-GACCGAGGGTTGCGGCAGCAGGATCG
* * * **
19905994 GCAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCTCA-TCTACCTCTCCGACCGGTTGAGC
65 ACAGCACGCAGGGGGGACCGGG-CGATCCCCGGCTTGCTCATTCTACCTCTCCGACCGACTGAGC
* * * *
19906058 GCTCGTACGCTTGTTGCGGGGGTTAACTTAGGCATACGGAGTTCATCCCCAATC
129 GCCCGCACGCTCGTTGCGGGGGCTAACTTAGGCATACGGAGTTCATCCCCAATC
** * **
19906112 TAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGGCAGCAGGATC
1 TAAGCATACGA-AGTTCATTCCCAGTCTAAGATTGGA-TCGACCGAGGGTTGCGGCAGCAGGATC
* * *
19906176 GATAGCACACAGGGGGGACCGGGCAGATCCCCGGCTTGCACATTCTACCTCTCCGACCGACTGAG
64 GACAGCACGCAGGGGGGACCGGGC-GATCCCCGGCTTGCTCATTCTACCTCTCCGACCGACTGAG
* * * * * ** *
19906241 CGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
128 CGCCCGCACGCTCGTTGCGGGGGCTAACTTAGGCATACGGAGTTCAT
19906288 TACATGTCTA
Statistics
Matches: 293, Mismatches: 61, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
182 2 0.01
183 145 0.49
184 82 0.28
185 63 0.22
186 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (182 bp):
TAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGACCGAGGGTTGCGGCAGCAGGATCGA
CAGCACGCAGGGGGGACCGGGCGATCCCCGGCTTGCTCATTCTACCTCTCCGACCGACTGAGCGC
CCGCACGCTCGTTGCGGGGGCTAACTTAGGCATACGGAGTTCATCCCCAATC
Found at i:19906118 original size:26 final size:26
Alignment explanation
Indices: 19906089--19906141 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19906079 GTTAACTTAG
*
19906089 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
19906115 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
19906141 G
1 G
19906142 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:19906468 original size:26 final size:25
Alignment explanation
Indices: 19906432--19906483 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
19906422 GTTAGCTTAG
19906432 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
19906458 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
19906483 G
1 G
19906484 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:19907694 original size:26 final size:26
Alignment explanation
Indices: 19907654--19907706 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19907644 GTTGACTTAG
19907654 GCATATAGAGGTCATCCCCAGTCTAA
1 GCATATAGAGGTCATCCCCAGTCTAA
* * * *
19907680 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATAGAGGTCATCCCCAGTCTAA
19907706 G
1 G
19907707 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATAGAGGTCATCCCCAGTCTAA
Found at i:19907785 original size:513 final size:513
Alignment explanation
Indices: 19906812--19907839 Score: 1756
Period size: 513 Copynumber: 2.0 Consensus size: 513
19906802 TGAGTTTTTA
* * * * *
19906812 GCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAATTTTAGGGACAAAA
1 GCTTAATTTTGTTATGCATACCAAAAAAAATACAAGGATCACCTCTACCAAATTTAGGGACAAAA
* *
19906877 ATCTTCCTAAAAAAATTTAAAAAATCTCGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAA
66 ATCTTCCTAAAAAAATTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAA
** *
19906942 AACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTGGGGGACCATTGTATGAATTTACAAGC
131 AACAAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGC
19907007 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCTTGAAACCACCTACCACCCGTTCGAT
196 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCTTGAAACCACCTACCACCCGTTCGAT
* * *
19907072 CCCCGGCTTGCGCATCCTACCTCTCTGGTCGGCTGAGCGCCCGCATGGTCGTTTAGTGGGTTGAC
261 CCCCAGCTTGCGCATCCTACCTCTCTGGTCGGCTGAGCGCCCGCACGGCCGTTTAGTGGGTTGAC
* *
19907137 TTAGGCATACGGAGGTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTTATCTAAGATCAGACC
326 TTAGGCATACAGAGGTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTTATCTAAGATCAAACC
*
19907202 AGACCAAGGGTTGCAGCAGTAGGATCAACAGCACCCAGGGGGGACCGGGCCGATCCCCGGCTTAC
391 AGACCAAGGGTTGCAGCAGTAGGATCAACAACACCCAGGGGGGACCGGGCCGATCCCCGGCTTAC
* *
19907267 GCATTCTGCCTCTCTGGCTGACTGACTGCCCGCACGCCCATTTCATGGGTTGGCTTAG
456 GCATTCTGCCTCTCTGACTGACTGACTGCCCGCACGCCCATTTCATGGGCTGGCTTAG
* *
19907325 GCTTAA-TTTGTTATGCATACCAAAAAAAATACAAGGATCACCTCTACGAAATTTGGGGACAAAA
1 GCTTAATTTTGTTATGCATACCAAAAAAAATACAAGGATCACCTCTACCAAATTTAGGGACAAAA
* * *
19907389 ATTTTTCTAAAAAAATGTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
66 ATCTTCCTAAAAAAAT-TTAAAAAATCTC-GAACCATAAAAAGTTTCAAAAATCATGAAAAATAG
19907453 AAAACAAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAA
129 AAAACAAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAA
19907518 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCTTGAAACCACCTACCACCCGTTCG
194 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCTTGAAACCACCTACCACCCGTTCG
19907583 ATCCCCAGCTTGCGCATCCTACCTCTCTGGTCGGCTGAGCGCCCGCACGGCCGTTTAGTGGGTTG
259 ATCCCCAGCTTGCGCATCCTACCTCTCTGGTCGGCTGAGCGCCCGCACGGCCGTTTAGTGGGTTG
*
19907648 ACTTAGGCATATAGAGGTCATCCCCAGTCTAAGCATATGGAGTTCATTCC-TAGTCTAAGATCAA
324 ACTTAGGCATACAGAGGTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTTA-TCTAAGATCAA
* * *
19907712 ACCGGACCAAGGGTTGCAGCAGTAGGATCGACAACACCCAGGGGGGACCGGGTCGATCCCCGGCT
388 ACCAGACCAAGGGTTGCAGCAGTAGGATCAACAACACCCAGGGGGGACCGGGCCGATCCCCGGCT
*
19907777 TGCGCATTCTGCCTCTCTGACTGACTGACTGCCCGCACGCCCATTTCATGGGCTGGCTTAG
453 TACGCATTCTGCCTCTCTGACTGACTGACTGCCCGCACGCCCATTTCATGGGCTGGCTTAG
19907838 GC
1 GC
19907840 ATAGGGAGTT
Statistics
Matches: 484, Mismatches: 28, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
512 68 0.14
513 416 0.86
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (513 bp):
GCTTAATTTTGTTATGCATACCAAAAAAAATACAAGGATCACCTCTACCAAATTTAGGGACAAAA
ATCTTCCTAAAAAAATTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACAAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCTTGAAACCACCTACCACCCGTTCGAT
CCCCAGCTTGCGCATCCTACCTCTCTGGTCGGCTGAGCGCCCGCACGGCCGTTTAGTGGGTTGAC
TTAGGCATACAGAGGTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTTATCTAAGATCAAACC
AGACCAAGGGTTGCAGCAGTAGGATCAACAACACCCAGGGGGGACCGGGCCGATCCCCGGCTTAC
GCATTCTGCCTCTCTGACTGACTGACTGCCCGCACGCCCATTTCATGGGCTGGCTTAG
Found at i:19908064 original size:159 final size:157
Alignment explanation
Indices: 19907680--19908107 Score: 398
Period size: 159 Copynumber: 2.7 Consensus size: 157
19907670 CCCAGTCTAA
* * * * *
19907680 GCATATGGAGTTCATTCCTAGTCTAAGATCAAACCGGACCAAGGG-TTGCAGCAGTAGGATCGAC
1 GCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTG-A-CAGTAGGATCGAC
* * * * * * *
19907744 AACACCCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACTGACTGACTGC
64 AGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCTGACCGACTCAATGC
* *
19907809 CCGCACGCCCATTTCATGGGCTGGCTTAG
129 CCACACGCCCATTTCATGGGCTGACTTAG
* ** * ** *
19907838 GCATAGGGAGTTAATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGA-CCA
1 GCATACGGAGTTAATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTT-TGACAGTAGGATCGA
* * * * *
19907900 GCAGCATGCAGAGGAGGACCGGGTCGATCCTCGGCTTGCACATTATGCCTCTCTGGCCGGCTCAA
63 -CAGCACGCAG-GGGGGACCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCTGACCGACTCAA
* * * *
19907965 TGCCCACATGCTCATTTCATGGGTTGACTTTG
126 TGCCCACACGCCCATTTCATGGGCTGACTTAG
* * * *
19907997 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTATGATAGTAGGATCGACA
1 GCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-TGACAGTAGGATCGACA
* * * *
19908062 GCACGTAGGGGGGATCGGG-CCAGTCCTCGGCTTGCTCATTCTGCCT
65 GCACGCAGGGGGGACCGGGTCGA-TCCTCGGCTTGCACATTCTGCCT
19908108 TTCCGGTCGA
Statistics
Matches: 212, Mismatches: 48, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.03
158 78 0.37
159 121 0.57
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTGACAGTAGGATCGACAG
CACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCTGACCGACTCAATGCCC
ACACGCCCATTTCATGGGCTGACTTAG
Found at i:19908204 original size:26 final size:26
Alignment explanation
Indices: 19908155--19908205 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19908145 GTTGGCTTAG
*
19908155 GCATACAGAGTTCATTCCATGTCTAC
1 GCATACAGAGTTCATCCCATGTCTAC
*
19908181 GCATACGGAGTTCATACCCA-GTCTA
1 GCATACAGAGTTCAT-CCCATGTCTA
19908206 AGATCAGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCATGTCTAC
Found at i:19909680 original size:26 final size:26
Alignment explanation
Indices: 19909644--19909694 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19909634 CTGGCTTAGG
*
19909644 CATACGGAGTTAATT-CCATGTCTAAA
1 CATACAGAGTTAATTCCCA-GTCTAAA
*
19909670 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTAATTCCCAGTCTAA
19909695 GATCGGATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTAATTCCCAGTCTAAA
Found at i:19910039 original size:26 final size:26
Alignment explanation
Indices: 19910010--19910062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19910000 GTTGACTTAG
19910010 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
19910036 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19910062 G
1 G
19910063 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19910172 original size:26 final size:26
Alignment explanation
Indices: 19910142--19910193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19910132 GTTTACTTAG
19910142 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
19910168 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19910194 TATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19910216 original size:132 final size:132
Alignment explanation
Indices: 19909979--19910218 Score: 392
Period size: 132 Copynumber: 1.8 Consensus size: 132
19909969 CCGGCTGAGC
* * *
19909979 GCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGG
1 GCCCGCATGCTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG
*
19910044 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGACCAACAGATATAGG
66 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAACAGATATAGG
19910109 GG
131 GG
* * *
19910111 GCCCGTATGCTCGTTTCATAGGTTTACTTAGGCATAC-GAAGTTCATCCCCAGTCTAAGCATACA
1 GCCCGCATGCTCATTTCATAGGTTGACTTAGGCATACAG-AGTTCATCCCCAGTCTAAGCATACA
*
19910175 GAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTACGG
65 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGG
19910219 TAACAAGATT
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
131 1 0.01
132 98 0.99
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (132 bp):
GCCCGCATGCTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAACAGATATAGG
GG
Found at i:19910617 original size:159 final size:159
Alignment explanation
Indices: 19910366--19910661 Score: 353
Period size: 159 Copynumber: 1.9 Consensus size: 159
19910356 CAATCGGATA
* *
19910366 GAGGGTTGTGGCAACGAGACCGACAGCACGTAGAGAGGGACCGGGCCGATCCCTGGCTTGCGCAT
1 GAGGGTTGTGGCAACGAGACCGACAGCACGCAGAGAGGGACCGGGCCGATCCCTGGCTTACGCAT
* * * * * ** *
19910431 TATGCCTCTCCAGTCAGTTTAGCGCCCGTACACTTGTTTCGTGGGTTGACTTAGGCATACGAAGT
66 TATGCCTATCCACTCAGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGT
19910496 TAATTCCCAATGTAAGATCAGACCAGACC
131 TAATTCCCAATGTAAGATCAGACCAGACC
* * * * * *
19910525 GAGGGTTGTGGCAGC-AGGATCGACAGCACGCAGGGAGGGATCGGGTCGGTCCCTGGCTTACGCA
1 GAGGGTTGTGGCAACGA-GACCGACAGCACGCAGAGAGGGACCGGGCCGATCCCTGGCTTACGCA
* * * * * *
19910589 TTCTGTCTATCCGACT-GGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAA
65 TTATGCCTATCC-ACTCAGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAA
*
19910653 GTTCATTCC
129 GTTAATTCC
19910662 ATGTCTAAGC
Statistics
Matches: 112, Mismatches: 23, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
158 1 0.01
159 109 0.97
160 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
GAGGGTTGTGGCAACGAGACCGACAGCACGCAGAGAGGGACCGGGCCGATCCCTGGCTTACGCAT
TATGCCTATCCACTCAGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGT
TAATTCCCAATGTAAGATCAGACCAGACC
Found at i:19910674 original size:26 final size:26
Alignment explanation
Indices: 19910644--19910696 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19910634 GTTGGCTTAG
19910644 GCATAC-GAAGTTCATTC-CATGTCTAA
1 GCATACAG-AGTTCATTCTCA-GTCTAA
19910670 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
19910696 G
1 G
19910697 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:19910907 original size:12 final size:12
Alignment explanation
Indices: 19910890--19910944 Score: 74
Period size: 12 Copynumber: 4.6 Consensus size: 12
19910880 TGAGGGTTGT
*
19910890 GGTAGCAACACC
1 GGTAGCAAGACC
*
19910902 GGTAGCAAGATC
1 GGTAGCAAGACC
*
19910914 GGTAGCATGACC
1 GGTAGCAAGACC
*
19910926 GGTAGCAAGATC
1 GGTAGCAAGACC
19910938 GGTAGCA
1 GGTAGCA
19910945 CGCAGAGGAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.31, C:0.22, G:0.33, T:0.15
Consensus pattern (12 bp):
GGTAGCAAGACC
Found at i:19910926 original size:24 final size:24
Alignment explanation
Indices: 19910890--19910944 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
19910880 TGAGGGTTGT
19910890 GGTAGCAACACCGGTAGCAAGATC
1 GGTAGCAACACCGGTAGCAAGATC
**
19910914 GGTAGCATGACCGGTAGCAAGATC
1 GGTAGCAACACCGGTAGCAAGATC
19910938 GGTAGCA
1 GGTAGCA
19910945 CGCAGAGGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.33, T:0.15
Consensus pattern (24 bp):
GGTAGCAACACCGGTAGCAAGATC
Found at i:19911261 original size:26 final size:26
Alignment explanation
Indices: 19911232--19911284 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19911222 GTTGGCTTAG
*
19911232 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
19911258 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19911284 G
1 G
19911285 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:19912343 original size:159 final size:158
Alignment explanation
Indices: 19912105--19912469 Score: 349
Period size: 158 Copynumber: 2.3 Consensus size: 158
19912095 CCTGTGAGCA
* ** * * * * ** *
19912105 CCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGAGAGTTCATT-CCATGTCTAAGCCCCA-G
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCA-ATCTAAG-ATCATA
* * * * * * * * *
19912168 CCGGATCGAGGGTTGTGGCAGCGGGACCGATAACATGCAGAGGGGGATCGGGCCGATCCCCGGCT
64 CCAGATCGAGGATTGTGACAGCAGGACCGACAACACGCA-AGGGGGACCGGACCGATCCCCGACT
* *
19912233 TGCGCATTATGCCTCTCCGGCAGGCTCAA-CG
128 TGCACATTATGCCTCTACGGCAGGCT-AAGCG
* *
19912264 CCCGTAGGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGATCATACC
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGATCATACC
** * * *
19912329 AGATCGAGGATTGTGACAGCAGGATTGACAGCACGCAAGGGGGACCGGATCGGTCCCCGACTTGC
66 AGATCGAGGATTGTGACAGCAGGACCGACAACACGCAAGGGGGACCGGACCGATCCCCGACTTGC
* * * * *
19912394 ACCTTCTTCCTCTATGGCTGGCTAAGCG
131 ACATTATGCCTCTACGGCAGGCTAAGCG
* **
19912422 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCC
19912470 ATGCCTAAGC
Statistics
Matches: 165, Mismatches: 38, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
157 2 0.01
158 86 0.52
159 74 0.45
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGATCATACC
AGATCGAGGATTGTGACAGCAGGACCGACAACACGCAAGGGGGACCGGACCGATCCCCGACTTGC
ACATTATGCCTCTACGGCAGGCTAAGCG
Found at i:19912851 original size:159 final size:157
Alignment explanation
Indices: 19912627--19913147 Score: 401
Period size: 159 Copynumber: 3.3 Consensus size: 157
19912617 CGCACACCCG
** * * * * * * * *
19912627 TTTCATGGGTTGGTTTGGGCATAGGGAGTTCACT-CCATGTCTAAACCCCAGCCAGACAAATGGT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAAACCCAACCGGACAGAGGGT
* * *
19912691 TGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCTTAGCTTGCGCATTATGCC
65 TGTGGCAACGGGACCGGCAGCACGAAGAGGGGGACCGGGCCGATCCTAAGCTTGCGCATTATGCC
* * *
19912756 TTTCCGGTTGGCTCAGTGCCCGTACGCTCA
130 TCTCCGGTTGACT-AGCGCCC-TACGCTCA
* * * * *
19912786 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGAACCGGACCGAGGG-T
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAAACCCAACCGGACAGAGGGTT
* *** * * * ** * * *
19912850 -T-GCAACTGCAGGATCAATAGCACAAAG-GGGTGGATCGGGCTGAT-CTCCGACTTACGCCTTC
66 GTGGCAAC-G--GGACCGGCAGCACGAAGAGGG-GGACCGGGCCGATCCTAAG-CTTGCGCATTA
* * *
19912911 TGCCTCTCCGGTCGACTGAGCGCCCACACGCCCA
126 TGCCTCTCCGGTTGACT-AGCGCCC-TACGCTCA
* * ** * *
19912945 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACAGAGGGT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAAACCCAACCGGACAGAGGGT
* * * **
19913009 TGTGGTAGCGGGACCGGCAGCACGTAGAGGGGGACCGGATCGATCC-AAGGCTTGCGCATTATGC
65 TGTGGCAACGGGACCGGCAGCACGAAGAGGGGGACCGGGCCGATCCTAA-GCTTGCGCATTATGC
* * *
19913073 CTCTCCGGCCTGCCTAGCACCCTCACGCTCA
129 CTCTCCGG-TTGACTAGCGCCCT-ACGCTCA
19913104 TTTCATGGGTTGACTTAGGCATACGGAAGTTCATTCCCAGTCTA
1 TTTCATGGGTTGACTTAGGCATACGG-AGTTCATTCCCAGTCTA
19913148 CGAACAGATC
Statistics
Matches: 272, Mismatches: 73, Indels: 33
0.72 0.19 0.09
Matches are distributed among these distances:
156 5 0.02
157 2 0.01
158 9 0.03
159 223 0.82
160 25 0.09
161 5 0.02
162 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAAACCCAACCGGACAGAGGGTT
GTGGCAACGGGACCGGCAGCACGAAGAGGGGGACCGGGCCGATCCTAAGCTTGCGCATTATGCCT
CTCCGGTTGACTAGCGCCCTACGCTCA
Found at i:19913064 original size:318 final size:317
Alignment explanation
Indices: 19912562--19913307 Score: 898
Period size: 318 Copynumber: 2.3 Consensus size: 317
19912552 ATAGCACATA
* * * * * *
19912562 GGGATCGGGCCGATCCTCGACTTGCGCATTCTCCCTCTCCGATCGGTTGAGCGTCCGCACACCCG
1 GGGATCGGGCTGATCC-CGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCC-
* * * *
19912627 TTTCATGGGTTGGTTTGGGCATAGGGAGTTCACTCCATGTCTAAACCCCAGCCAGACAAATGGTT
64 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACAAAGGGTT
* *
19912692 GTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCTTAGCTTGCGCATTATGCCT
129 GTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGACCGATCCTAAGCTTGCGCATTATGCCT
* * * ** *
19912757 TTCCGG-TTGGCTCAGTGCCCGT-ACGCTCATTTCGTAGGTTGACTTAGGCATACGG-AGTTCAT
194 CTCCGGCCTGCCT-AGCACCC-TCACGCTCATTTCATAGGTTGACTTAGGCATACGGAAGTTCAT
* *
19912819 TCCCAGTCTA-AAATC-GAACCGGACCGAGGGTTGCAACTGCAGGATCAATAGCACA-AAGGG
257 TCCCAGTCTACAAA-CAG-ACCGGACCGAGGGTTACAACAGCAGGATCAATAGCACACAAGGG
* ** *
19912879 GTGGATCGGGCTGATCTCCGACTTACGCCTTCTGCCTCTCCGGTCGACTGAGCGCCCACACGCCC
1 G-GGATCGGGCTGATC-CCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCC
* ** *
19912944 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACAGAGGGT
64 -TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACAAAGGGT
* * * * *
19913009 TGTGGTAGCGGGACCGGCAGCACGTAGAGGGGGACCGGATCGATCC-AAGGCTTGCGCATTATGC
128 TGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGACCGATCCTAA-GCTTGCGCATTATGC
*
19913073 CTCTCCGGCCTGCCTAGCACCCTCACGCTCATTTCATGGGTTGACTTAGGCATACGGAAGTTCAT
192 CTCTCCGGCCTGCCTAGCACCCTCACGCTCATTTCATAGGTTGACTTAGGCATACGGAAGTTCAT
* * * * * *
19913138 TCCCAGTCTACGAACAGATCGGACCGATGGTTACGACAGTAGGATCGATAGCACACAAGGG
257 TCCCAGTCTACAAACAGACCGGACCGAGGGTTACAACAGCAGGATCAATAGCACACAAGGG
* * * *
19913199 GGGATCAGGCTGGTCCCCGACTTACGCATTCTGCCTCTTC-GTCTGGTTGAGCGCCCGCACGCTT
1 GGGATCGGGCTGAT-CCCGACTTACGCATTCTGCCTCTCCGGTC-GGTTGAGCGCCCGCACGC-C
*
19913263 CTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAA
63 CTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAA
19913308 TATCAGACTA
Statistics
Matches: 366, Mismatches: 50, Indels: 24
0.83 0.11 0.05
Matches are distributed among these distances:
317 3 0.01
318 208 0.57
319 141 0.39
320 14 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (317 bp):
GGGATCGGGCTGATCCCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCTT
TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACAAAGGGTTGT
GGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGACCGATCCTAAGCTTGCGCATTATGCCTCT
CCGGCCTGCCTAGCACCCTCACGCTCATTTCATAGGTTGACTTAGGCATACGGAAGTTCATTCCC
AGTCTACAAACAGACCGGACCGAGGGTTACAACAGCAGGATCAATAGCACACAAGGG
Found at i:19913328 original size:159 final size:165
Alignment explanation
Indices: 19912773--19913479 Score: 437
Period size: 159 Copynumber: 4.4 Consensus size: 165
19912763 TTGGCTCAGT
* * * *
19912773 GCCCGTACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-AATC-GA
1 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAA-CAG-
* ** * * * *
19912836 ACCGGACCGA-GG--GTTGC--AA-CTGCAGGATCAATAGCACA-AAGGGGTGGATCGGGCTGAT
64 ATCAAACCGATGGTTGTAGCAGAAGCAGCAGGATCGATAGCACACAAGGGG-GGATCAGGCTGAT
* * * ** *
19912894 CTCCGACTTACGCCTTCTGCCTCTCCGGTCGACTGAGC
128 CCCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGC
* * * **
19912932 GCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG
1 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-AACAG
* ** * * * * ** ** * *
19912996 CT-GGACAGAGGGTTGT-G--GTAGC-G--GGACCGGCAGCAC-GTAGAGGGGGA-CCGGATCGA
64 ATCAAACCGATGGTTGTAGCAGAAGCAGCAGGATCGATAGCACACAAG-GGGGGATCAGGCT-GA
** * * * * * *
19913052 TCCAAGGCTTGCGCATTATGCCTCTCCGGCCTGCCT-AGC
127 TCCCCGACTTACGCATTCTGCCTCTTCGACC-GGCTGAGC
* * * *
19913091 ACCCTCACGCTCATTTCATGGGTTGACTTAGGCATACGGAAGTTCATTCCCAGTCTACGAACAGA
1 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGAACAGA
** * *
19913156 TCGGACCGATGG-T-TA-C-G-A-CAGTAGGATCGATAGCACACAAGGGGGGATCAGGCTGGTCC
65 TCAAACCGATGGTTGTAGCAGAAGCAGCAGGATCGATAGCACACAAGGGGGGATCAGGCTGATCC
* * *
19913215 CCGACTTACGCATTCTGCCTCTTCGTCTGGTTGAGC
130 CCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGC
* *
19913251 GCCCGCACGCTTC-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGA
1 GCCCGCACGC-TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGA
* * * *
19913315 -CTAAACCGATGGTTGCGGTAGCAAGACTAGCAGCAGGATCGGTAGCACGCAGGGGGGGATCGGG
65 TC-AAACCGATGGTT---GTAGC-AGA--AGCAGCAGGATCGATAGCACACAAGGGGGGATCAGG
* * * * *
19913379 CTGATCCCTGGCTTGCGTATTCTGCCTCTTTGACCGGCTGAGC
123 CTGATCCCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGC
* * *
19913422 GCCCGTACGCTCATTTCATGGCTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAG
1 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
19913480 CACCAGCCGG
Statistics
Matches: 424, Mismatches: 84, Indels: 68
0.74 0.15 0.12
Matches are distributed among these distances:
157 1 0.00
158 11 0.03
159 166 0.39
160 108 0.25
161 15 0.04
162 3 0.01
164 2 0.00
165 1 0.00
167 1 0.00
170 6 0.01
171 110 0.26
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (165 bp):
GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGAT
CAAACCGATGGTTGTAGCAGAAGCAGCAGGATCGATAGCACACAAGGGGGGATCAGGCTGATCCC
CGACTTACGCATTCTGCCTCTTCGACCGGCTGAGC
Found at i:19913522 original size:171 final size:170
Alignment explanation
Indices: 19913170--19913551 Score: 385
Period size: 171 Copynumber: 2.2 Consensus size: 170
19913160 ACCGATGGTT
* * * *
19913170 ACGACAGTAGGATCGATAGCACACAAGGGGGGATCAGGCTGGTCCCCGACTTACGCATTCTGCCT
1 ACGACAGCAGGATCGGTAGCACGCAAGGGGGGATCAGGCTGATCCCCGACTTACGCATTCTGCCT
* * * * *
19913235 CTTCGTCTGGTTGAGCGCCCGCACGCTTCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
66 CTTCGACCGGCTGAGCGCCCGCACGCTTCTTTCATGGCTTGGCTTAGGCATACGAAGTTCATTCC
* * * * *
19913300 CAGTCTAATATCAGACTAAACCGATGGTTGCGGTAGCAAG
131 CAGTCTAACACCAGACCAAACCAAGGGTTGCGGTAGCAAG
* * * * * * *
19913340 ACTAGCAGCAGGATCGGTAGCACGCAGGGGGGGATCGGGCTGATCCCTGGCTTGCGTATTCTGCC
1 ACGA-CAGCAGGATCGGTAGCACGCAAGGGGGGATCAGGCTGATCCCCGACTTACGCATTCTGCC
* *
19913405 TCTTTGACCGGCTGAGCGCCCGTACGC-TCATTTCATGGCTTGGCTTAGGCATACGAAGTTCATT
65 TCTTCGACCGGCTGAGCGCCCGCACGCTTC-TTTCATGGCTTGGCTTAGGCATACGAAGTTCATT
** * * * *
19913469 -CCATGTCTAAGCACCAG-CCGGATCAAGGGTTGTGGCT-GTAGG
129 CCCA-GTCTAA-CACCAGACCAAACCAAGGGTTGCGG-TAGCAAG
* * * *
19913511 ACCGACAGCAGGATCAGCAGCACGTAAAGGGGGATCAGGCT
1 A-CGACAGCAGGATCGGTAGCACGCAAGGGGGGATCAGGCT
19913552 ACTCCGTGAC
Statistics
Matches: 170, Mismatches: 36, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
170 8 0.05
171 155 0.91
172 7 0.04
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (170 bp):
ACGACAGCAGGATCGGTAGCACGCAAGGGGGGATCAGGCTGATCCCCGACTTACGCATTCTGCCT
CTTCGACCGGCTGAGCGCCCGCACGCTTCTTTCATGGCTTGGCTTAGGCATACGAAGTTCATTCC
CAGTCTAACACCAGACCAAACCAAGGGTTGCGGTAGCAAG
Found at i:19913869 original size:26 final size:26
Alignment explanation
Indices: 19913833--19913885 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19913823 GTTGGCTTAG
*
19913833 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19913859 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19913885 G
1 G
19913886 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19914054 original size:194 final size:196
Alignment explanation
Indices: 19913618--19914054 Score: 517
Period size: 196 Copynumber: 2.2 Consensus size: 196
19913608 CCACATGCTT
** * *
19913618 GTTTCATGGGTTGGCTTAGGCATACAAAGTTTATTCCATGCCTAAGCATACGGAGTTCATTCCCA
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * *
19913683 GTCTAAGATCAGACTGGACTTAAGGTTGTAGCAGTAGGACCAGCAGCAGGATCGACAGCACGTAG
66 GTCTAAGATCAGACTGGACTGAAGGTTGGAGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAG
* ** * *
19913748 GGGGGATCGGGTTGATCCCCGACTTGGGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCC
131 AGGGGATCGGGTCAATCCACGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCC
19913813 C
196 C
* * *
19913814 GTTTCCTAGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * *
19913879 GTCTAAGATCAGA-TCGGA-TCGAGGGTTGCGA-CAGCAGGACCAGCA-TAGGATCGACAGTACG
66 GTCTAAGATCAGACT-GGACT-GAAGGTTG-GAGCAGCAGGACCAGCAGCAGGATCGACAGCACG
* * * *** * *
19913940 CA-AGGGGA-CTGGGTCAATCCACGGCTTGCGCATTTTGCCTCTCCGGTTGGTTGAGCGCCCGTA
128 CAGAGGGGATC-GGGTCAATCCACGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCA
*
19914003 CGCTC
192 CGCCC
* * *
19914008 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAATCCATATCTAAGC
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
19914055 CCTAGTCGGA
Statistics
Matches: 204, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
193 1 0.00
194 92 0.45
195 17 0.08
196 93 0.46
197 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACTGGACTGAAGGTTGGAGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAG
AGGGGATCGGGTCAATCCACGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCC
C
Found at i:19914392 original size:26 final size:26
Alignment explanation
Indices: 19914356--19914408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19914346 GTTGGCTGAG
*
19914356 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
19914382 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19914408 G
1 G
19914409 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19914732 original size:509 final size:513
Alignment explanation
Indices: 19913803--19914892 Score: 1327
Period size: 509 Copynumber: 2.1 Consensus size: 513
19913793 CGGCTGAGCG
* * * * * *
19913803 CCCGCACGCCCGTTTCCTAGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGA
1 CCCGCACACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
* * *
19913868 GTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGACCAGCATAGGATCGA
66 GTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGACAGCAGGACCAACATAGGATCGA
* * * *
19913933 CAGTACGCAAGGGGACTGGGTCAATCCACGGCTTGCGCATTTTGCCTCTCCGGTTGGTTGAGCGC
131 CAGCACGCAAGGGGACCGGGCCAATCCACGGCTTGCGCATTCTGCCTCTCC-----G--GA---C
* * * * * * * * *
19913998 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAATCCATATCTAAGCCCTAGTCG
186 CCGCACGCTCATTTCATGGGTTGGCATAGGCATACAGAGTTCAATCAATATCTAAGCCCCAGCCA
* * * * ** *
19914063 GACCGAGGGTTGTGGCAGCAGGATCGACAGCGGGTTTGGTAGCACGTAGAGGGGGATCGAGTCGA
251 GACCAAGGGTTGTGGCAGCAGGATCGACAGCGGGATCGGTAACACACAGAGGGGGACCGAGTCGA
* ** *
19914128 TCCCCGGCTTCCGCATTATGCCGTTCCGGTCAGCTCAGCGCCCGTACGCTCGATTCATGGGTTGA
316 TCCCCGGCTTCCACATTATGCCGTTCCGACCAGCTCAACGCCCGTACGCTCGATTCATGGGTTGA
* * ** * *
19914193 CTTATGCTTACAGACTTCATTCTTAGTCTAAGATCAGACC-GAACTGAGGGTTACGGCAGCAGGA
381 CTTATGCATACAGACGTCATTCCCAGTCTAAGACCAGACCAG-ACCGAGGGTTACGGCAGCAGGA
** * *
19914257 TCGATAGCACGCAGGGAGGGACC-GGCCGGTCCCCGGCTTGCCCATTTTGCCTCTCCAG-TAGAC
445 TCGATAGCACGCAGGG-GGGACCGGGCCGAACCCCGGCTTGCACATTCTGCCT-TCCAGTTAGAC
*
19914320 TGAGCA
508 TAAGCA
* * * *
19914326 CCCGCACACTCTTTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
1 CCCGCACACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
* *
19914391 GTTCATTCCCAGTCTAAGATCGGACCGG-TCCAAGGGTTGCGACAGTAGGACCAACATAGGAT-G
66 GTTCATTCCCAGTCTAAGATCAGACCGGAT-CAAGGGTTGCGACAGCAGGACCAACATAGGATCG
* *
19914454 ACAGCACGCAGGGGGACCGGGCCAATCCGTC-GCTTG-GCATTCTGCCTCTCC-GA-CCGCACGC
130 ACAGCACGCAAGGGGACCGGGCCAATCC-ACGGCTTGCGCATTCTGCCTCTCCGGACCCGCACGC
* *
19914515 TCATTTCATGGGTTGGCATAGGCATACAGAGTTCATTCAATTTCTAAGCCCCAGCCAGACCAAGG
194 TCATTTCATGGGTTGGCATAGGCATACAGAGTTCAATCAATATCTAAGCCCCAGCCAGACCAAGG
* * *
19914580 GTTGTGGCAGCAGGATCGGCAGTGGGATCGGTAACACACAGAGGGGGACCGGGTCGATCCCCGGC
259 GTTGTGGCAGCAGGATCGACAGCGGGATCGGTAACACACAGAGGGGGACCGAGTCGATCCCCGGC
* * * *
19914645 TTGCACATTATGCC-TCTCCGACCGGCTCAACGCCCGTACGCTCGTTTCGTGGGTTGACTTATGC
324 TTCCACATTATGCCGT-TCCGACCAGCTCAACGCCCGTACGCTCGATTCATGGGTTGACTTATGC
* * * *
19914709 ATACGGAGGTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATAGC
388 ATACAGACGTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGGATCGATAGC
* * * *
19914774 ACGCAGGGGGGACCGGGTCGAACCCCGGCTTGCACATTCTGCCTTTCTGTTCGACTAAGCA
453 ACGCAGGGGGGACCGGGCCGAACCCCGGCTTGCACATTCTGCCTTCCAGTTAGACTAAGCA
* *
19914835 CCCGCACGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CCCGCACACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
19914893 CCCAGTCGGA
Statistics
Matches: 488, Mismatches: 73, Indels: 26
0.83 0.12 0.04
Matches are distributed among these distances:
508 10 0.02
509 317 0.65
510 1 0.00
513 2 0.00
521 14 0.03
522 31 0.06
523 113 0.23
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (513 bp):
CCCGCACACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGACAGCAGGACCAACATAGGATCGA
CAGCACGCAAGGGGACCGGGCCAATCCACGGCTTGCGCATTCTGCCTCTCCGGACCCGCACGCTC
ATTTCATGGGTTGGCATAGGCATACAGAGTTCAATCAATATCTAAGCCCCAGCCAGACCAAGGGT
TGTGGCAGCAGGATCGACAGCGGGATCGGTAACACACAGAGGGGGACCGAGTCGATCCCCGGCTT
CCACATTATGCCGTTCCGACCAGCTCAACGCCCGTACGCTCGATTCATGGGTTGACTTATGCATA
CAGACGTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGGATCGATAGCACG
CAGGGGGGACCGGGCCGAACCCCGGCTTGCACATTCTGCCTTCCAGTTAGACTAAGCA
Found at i:19914912 original size:158 final size:159
Alignment explanation
Indices: 19914604--19914891 Score: 375
Period size: 158 Copynumber: 1.8 Consensus size: 159
19914594 ATCGGCAGTG
* *
19914604 GGATCGGTAACACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCG
1 GGATCGATAACACACAGAGGGGGACCGGGTCGAACCCCGGCTTGCACATTATGCCTCTCCGACCG
* * * * * * *
19914669 GCTCAACGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGGTCATTCCCAGTCTAAG
66 ACTCAACACCCGCACGCTCGTTTCATCGATTGACTTAGGCATACGGAGGTCATTCCCAGTCTAAG
19914734 ACCAGACCAGACCGAGGGTTGCGGTAGCA
131 ACCAGACCAGACCGAGGGTTGCGGTAGCA
* * * * * **
19914763 GGATCGATAGCACGCAG-GGGGGACCGGGTCGAACCCCGGCTTGCACATTCTGCCTTTCTGTTCG
1 GGATCGATAACACACAGAGGGGGACCGGGTCGAACCCCGGCTTGCACATTATGCCTCTCCGACCG
* *
19914827 ACT-AAGCACCCGCACGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
66 ACTCAA-CACCCGCACGCTCGTTTCATCGATTGACTTAGGCATACGGAGGTCATTCCCA-GTCTA
19914890 AG
129 AG
19914892 CCCCAGTCGG
Statistics
Matches: 109, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
157 5 0.05
158 90 0.83
159 14 0.13
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.22
Consensus pattern (159 bp):
GGATCGATAACACACAGAGGGGGACCGGGTCGAACCCCGGCTTGCACATTATGCCTCTCCGACCG
ACTCAACACCCGCACGCTCGTTTCATCGATTGACTTAGGCATACGGAGGTCATTCCCAGTCTAAG
ACCAGACCAGACCGAGGGTTGCGGTAGCA
Found at i:19915482 original size:159 final size:159
Alignment explanation
Indices: 19915214--19915576 Score: 363
Period size: 159 Copynumber: 2.3 Consensus size: 159
19915204 CACACACCCA
* * * * *
19915214 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTGTAAGCCCCAACCGGATCGAGGGTT
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCAAACCGGATCGAGGGTT
** * * * ** * * * * *
19915279 GTGGCAGCGGGACCGACAACATGTAAAAGTTGATCGGGCTGATCCTTGACTTTCGCATTATGCCT
66 GCAGCAGCAGGACCGACAACACGCAAAAGGGGATCAGGCCGATCCCTGACTTGCGCATTATACCT
19915344 CTTCGGCCTGCTCAACGCTTGCACGCTCG
131 CTTCGGCCTGCTCAACGCTTGCACGCTCG
* * *
19915373 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGATCGAGGGT
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGACCAAACCGGATCGAGGGT
* * ** *
19915437 TGCAGCAGCAGGATCGACAGCACGCATGAGGGGATCAGGCCGATCCCTGACTTGCGCATTCTACC
65 TGCAGCAGCAGGACCGACAACACGCAAAAGGGGATCAGGCCGATCCCTGACTTGCGCATTATACC
** ** ** * *
19915502 TCTTCGGCC-GACGGAGTGCCCGCACACTCA
130 TCTTCGGCCTG-CTCAACGCTTGCACGCTCG
* *
19915532 TTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAG
1 TTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCATGTCTAAG
19915577 CATGCGGAGT
Statistics
Matches: 163, Mismatches: 37, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
158 4 0.02
159 156 0.96
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (159 bp):
TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCAAACCGGATCGAGGGTT
GCAGCAGCAGGACCGACAACACGCAAAAGGGGATCAGGCCGATCCCTGACTTGCGCATTATACCT
CTTCGGCCTGCTCAACGCTTGCACGCTCG
Found at i:19918330 original size:26 final size:26
Alignment explanation
Indices: 19918296--19918350 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
19918286 GGGTTGACTA
19918296 AAGCATACGAAGTTCATCCCTAGTCT
1 AAGCATACGAAGTTCATCCCTAGTCT
* *
19918322 AAGCATACGGAGTTCATTCCTAGTCT
1 AAGCATACGAAGTTCATCCCTAGTCT
19918348 AAG
1 AAG
19918351 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
AAGCATACGAAGTTCATCCCTAGTCT
Found at i:19918631 original size:159 final size:157
Alignment explanation
Indices: 19918357--19918655 Score: 390
Period size: 159 Copynumber: 1.9 Consensus size: 157
19918347 TAAGATCGGA
*
19918357 CCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGACCGAACCGATCCCTGGCTTA
1 CCGGACCGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGGGGGACCGAACCGATCCCTGGCTTA
* ** * *
19918422 CGCATTCTGCCTCTCCAGCCGGTTGAGCGCTTGCACGCCCGTTACGTGGGTTTGCTTAGGCATA-
66 CGCATTATGCCTCTCCAGCCGGTTGAGCGCCCGCACGCCCGTTACATGGGTTGGCTTAGGCATAC
19918486 AGGAGTTCATTTCGTGTCTAAGCCCCAG
131 A-GAGTTCATTTCGTGTCTAAGCCCCAG
* ** *
19918514 CCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCTGAGGGGGACC-AGGCCGAT-CCTCGG
1 CCGGACCGAGGGTTGCGGCAGCAAGACCGACAGCACGC--AGGGGGACCGA-ACCGATCCCT-GG
* * * *
19918577 CTTGCGCATTATGCCTCTCC-GATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
62 CTTACGCATTATGCCTCTCCAG-CCGGTTGAGCGCCCGCACGCCCGTTACATGGGTTGGCTTAGG
19918641 CATACAGAGTTCATT
126 CATACAGAGTTCATT
19918656 CAATTTCTAA
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
157 34 0.28
158 5 0.04
159 82 0.67
160 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.21
Consensus pattern (157 bp):
CCGGACCGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGGGGGACCGAACCGATCCCTGGCTTA
CGCATTATGCCTCTCCAGCCGGTTGAGCGCCCGCACGCCCGTTACATGGGTTGGCTTAGGCATAC
AGAGTTCATTTCGTGTCTAAGCCCCAG
Found at i:19919373 original size:26 final size:26
Alignment explanation
Indices: 19919343--19919395 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19919333 GTTAACTTAG
19919343 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19919369 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19919395 G
1 G
19919396 ATCAAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19919727 original size:158 final size:159
Alignment explanation
Indices: 19919366--19919868 Score: 385
Period size: 158 Copynumber: 3.2 Consensus size: 159
19919356 ATCCCCAGTC
* ** * * * * * *
19919366 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACTAGACAGAGGGTTGCGGCAGCAGAATA
1 TAAGCATACGGAGTTCATT-CCATATCTAAGGCCCAGCCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * *
19919430 GGCAGCACGC-G-GGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGA
65 GACAGCACACAGAGAGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTCTCCGGCCGGCTCA
* * * *
19919493 GCGCCTGCACGACCGTTTCGTTGGTTGGCT
130 GCACCTGCACGACCCTTTCGTGGGTTGACT
* * * * **
19919523 TAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCAGACCGAGGGTTGTGGCAGTGGGATCG
1 TAAGCATACGGAGTTCATTCCATATCTAAGGCCCAGCCAGACCGAGGGTTGCGGCAGCAGGATCG
* * *
19919588 ATAGCACACAGAGAGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTCTTCGGTCGG-TCAG
66 ACAGCACACAGAGAGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTCTCCGGCCGGCTCAG
19919652 CACCTGCAC-ACTCCTTTCGTGGGTTGACT
131 CACCTGCACGAC-CCTTTCGTGGGTTGACT
**** * * *
19919681 TAAGCATACGGAGTTCATTCCCA-ATCTAA-GATTGGACCGGATCGAGGGTTGCGGTAGCAGGAT
1 TAAGCATACGGAGTTCATT-CCATATCTAAGGCCCAG-CCAGACCGAGGGTTGCGGCAGCAGGAT
* * *** * * * * ** *
19919744 CGACAGCACACAG-GGGGGACCGACCCGATCCCTAGCTTGCGCATTTTGCCTCTCCAACCGGCTG
64 CGACAGCACACAGAGAGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTCTCCGGCCGGCTC
* * * * ** *
19919808 AGCGCCCGTACG-CTCGTTTTATGGGTTGGCT
129 AGCACCTGCACGAC-CCTTTCGTGGGTTGACT
* *
19919839 TAGGCATACGGAGTTCATTCCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCATATCTAAG
19919869 CATACGAGTT
Statistics
Matches: 272, Mismatches: 64, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 96 0.35
158 128 0.47
159 45 0.17
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
TAAGCATACGGAGTTCATTCCATATCTAAGGCCCAGCCAGACCGAGGGTTGCGGCAGCAGGATCG
ACAGCACACAGAGAGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTCTCCGGCCGGCTCAG
CACCTGCACGACCCTTTCGTGGGTTGACT
Found at i:19919880 original size:25 final size:26
Alignment explanation
Indices: 19919842--19919893 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
19919832 GTTGGCTTAG
19919842 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19919868 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19919893 G
1 G
19919894 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19920250 original size:171 final size:167
Alignment explanation
Indices: 19919868--19920265 Score: 429
Period size: 171 Copynumber: 2.3 Consensus size: 167
19919858 CCATGTCTAA
* * * *
19919868 GCATACGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGTGACAGCAGGACCAGTAG
1 GCATACGAGTTCATT-CCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGCAGGACCAGCAA
* * *
19919933 TAGTATCGACAGCACGTAGGGGGGACCGGGACGATCCTCGGCTTACGCATTTGCCTCTCCGGCCG
65 CAGGATCGACAGCACGTAGGGGAGACCGGGACGATCCTCGGCTTACGCATTTGCCTCTCCGGCCG
* *
19919998 ACTGAGCACCCACACGCTAATTTCATGGGTTGGCTTAG
130 ACTCAGCACCCACACGCTAATTTCATGGGTTGACTTAG
* * ** ** **
19920036 GCATACGGAGTTCATACCATGTCTGAGCCCCAG-CCGAACCGAGGGTTGTGGTAGCAGGACTGGC
1 GCATAC-GAGTTCATTCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGTGACAGCAGGACCAGC
* * * * * * *
19920100 AACGGGATCGACAGCATGTAGAGGGAGATCGGGCCGATCCTCGGCTTGCGTATTATGCCTCTTCG
63 AACAGGATCGACAGCACGTAG-GGGAGACCGGGACGATCCTCGGCTTACGCATT-TGCCTCTCCG
* * * * * *
19920165 GTCGGCTCAGCTCCCACACGCTCATTTCGTGGGTTGACTTAT
126 GCCGACTCAGCACCCACACGCTAATTTCATGGGTTGACTTAG
* *
19920207 GCATACGATGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGA
1 GCATACGA-GTTCATTCC-AGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGCAGGA
19920266 TTGATAGCAC
Statistics
Matches: 184, Mismatches: 38, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
168 9 0.05
169 54 0.29
170 35 0.19
171 85 0.46
172 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (167 bp):
GCATACGAGTTCATTCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGCAGGACCAGCAAC
AGGATCGACAGCACGTAGGGGAGACCGGGACGATCCTCGGCTTACGCATTTGCCTCTCCGGCCGA
CTCAGCACCCACACGCTAATTTCATGGGTTGACTTAG
Found at i:19921451 original size:159 final size:154
Alignment explanation
Indices: 19921075--19921574 Score: 434
Period size: 159 Copynumber: 3.2 Consensus size: 154
19921065 CCCAGTCTAA
* * * * * *
19921075 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCGAACCAGGGTTACGATAGTAAGATCGGTA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCG-ACGAGGGTTACGACAGCAAGATTGATA
* * *
19921139 GCACGTAGGGGGATCGAGGTGATCCCCAGCTTGGGCATTCTGCCTCTC-CGACCGGCTGAGCGCC
64 GCACGTAGGGGG-TCGAGTTGATCCCCAGCTTGCGCATTCTGCCTCTCTGGA-CGGCTGAGCGCC
* * * *
19921203 CGCATGCCCGTTTCATGGATTGGCTTAG
127 CGTACGCTCGTTTCATGGGTTGGCTTAG
* * * * ** ** * **
19921231 GTATAGGGAGTTCATTCCATCTCTAAG-CCCCAGCCGGACTGAGGGTTGTGGCAGCGGGATTGAT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CC-GAC-GAGGGTTACGACAGCAAGATTGAT
* * * * *
19921295 AGCACACGGAGGGGGTCTGAGTTGATCCCCGGCTTGCGCATTATGCCTCTCTGGAAGGCTCAGCG
63 AG--CACGTAGGGGGTC-GAGTTGATCCCCAGCTTGCGCATTCTGCCTCTCTGGACGGCTGAGCG
* *
19921360 CCCGTACGCTCGTTTCGTGGGTTGACTTAG
125 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
* * *
19921390 GCATACGCAGTTCATTCCCA-GTCTAAGATCGGACCAGATCGAGGGTTACGACAACAAGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACC-GA-CGAGGGTTACGACAGCAAGATTGAT
* * * * ** *
19921454 AGCACGTAGGGGGGACCGGGTCGATCCCCAGCATATGCATTCTGCCTCTCTGGCCGGCTGAGCGC
63 AGCACGTA-GGGGG-TCGAGTTGATCCCCAGCTTGCGCATTCTGCCTCTCTGGACGGCTGAGCGC
* *
19921519 CCGCT-CGCTCATTTTATGGGTTGGCTTAG
126 CCG-TACGCTCGTTTCATGGGTTGGCTTAG
19921548 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
19921575 CATACGGAGT
Statistics
Matches: 266, Mismatches: 63, Indels: 28
0.75 0.18 0.08
Matches are distributed among these distances:
155 5 0.02
156 23 0.09
157 25 0.09
158 90 0.34
159 115 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGACGAGGGTTACGACAGCAAGATTGATAGC
ACGTAGGGGGTCGAGTTGATCCCCAGCTTGCGCATTCTGCCTCTCTGGACGGCTGAGCGCCCGTA
CGCTCGTTTCATGGGTTGGCTTAG
Found at i:19921584 original size:26 final size:26
Alignment explanation
Indices: 19921548--19921600 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19921538 GTTGGCTTAG
19921548 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19921574 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19921600 G
1 G
19921601 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19922452 original size:26 final size:26
Alignment explanation
Indices: 19922423--19922475 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19922413 GTTGGCTTAG
*
19922423 GCATACGAAGTTTATTC-CATGTCTAA
1 GCATACGAAGTTCATTCGCA-GTCTAA
*
19922449 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCGCAGTCTAA
19922475 G
1 G
19922476 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCGCAGTCTAA
Found at i:19924028 original size:158 final size:157
Alignment explanation
Indices: 19923541--19924043 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 157
19923531 CCCAGTCTAA
* * *
19923541 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAAGGTTGTGGTAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGAC-GGATCGAGGGTTGTGGCAGTAGGATCGACA
* * *
19923606 GCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAATGC
64 GCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAATGC
* *
19923671 CCGAACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * *
19923700 GCATAGGGAGTTCATTCCATGTCTAAGCTCCA-ACCGAACCGAGGGTTGTGGCA--ACGAGATCG
1 GCATACGGAGTTCATTCCA-GTCTAAGAT-CAGA-CGGATCGAGGGTTGTGGCAGTA-G-GATCG
** * ** * * * *
19923762 GTAGCACACAGAAAGGGATCGGGCTGATCCTCGGCTTGCGTATTATGCCTCTCCGATCGGCTCAA
61 ACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAA
* *
19923827 TGTCTGAACGCTCATTTCGTGGGTTGTG-TTAG
126 TGCCCGAACGCTCATTTCGTGGGTTG-GCTTAG
* * * *
19923859 GTATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGTAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGA-CGGATCGAGGGTTGTGGCAGTAGGATCGACA
* * * * * * * * *
19923924 GTACGCAG-GGGGGACCGAGCCGATCTTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGC
64 GCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAATGC
* *
19923988 CCGCACGCTCATTTCATGGGTTGGCTTAG
129 CCGAACGCTCATTTCGTGGGTTGGCTTAG
* * *
19924017 GCGTACGGAGTTTATTCAATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
19924044 CATACGCAGT
Statistics
Matches: 274, Mismatches: 58, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 91 0.33
159 173 0.63
160 6 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACGGATCGAGGGTTGTGGCAGTAGGATCGACAGC
ACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAATGCCC
GAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:19924059 original size:26 final size:26
Alignment explanation
Indices: 19924020--19924069 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
19924010 GGCTTAGGCG
* *
19924020 TACGGAGTTTATTCAATGTCTAAGCA
1 TACGCAGTTCATTCAATGTCTAAGCA
**
19924046 TACGCAGTTCATTCCCTGTCTAAG
1 TACGCAGTTCATTCAATGTCTAAG
19924070 ATTGGATCAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (26 bp):
TACGCAGTTCATTCAATGTCTAAGCA
Found at i:19928244 original size:26 final size:26
Alignment explanation
Indices: 19928207--19928259 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19928197 GTTGACTTAG
19928207 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
19928233 GCATA-GGAAGTTCATTCCCAGTCTAA
1 GCATACGG-AGTTCATTCCCAGTCTAA
19928259 G
1 G
19928260 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 19 0.76
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19928599 original size:25 final size:26
Alignment explanation
Indices: 19928547--19928599 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
19928537 TGGGTTGGCT
*
19928547 TAGGCATACAGAGTTCATTTCATGTC
1 TAGGCATACAGAGTTCATTTCAAGTC
*
19928573 TAGGCATACGGAGTTCA-TTCAAGTC
1 TAGGCATACAGAGTTCATTTCAAGTC
19928598 TA
1 TA
19928600 AGAGTTTGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTTCAAGTC
Found at i:19929683 original size:159 final size:158
Alignment explanation
Indices: 19929298--19929791 Score: 469
Period size: 159 Copynumber: 3.1 Consensus size: 158
19929288 TCCAGTTGAA
* * * *
19929298 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTGCGATAGCAA-GATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAG-AAGGATCGAC
* ** * * * ** *
19929362 AGCATGCA-AGGGCAATCAGATCGATCCCCGGCTTACACAATCTGCCTCTTCGGCCGGTTGAGCA
65 AGCACGCAGAGGGGGACCAGATCGATCCCC-GCTTGCACATTCTGCCTCTTCGGCCGACTGAGCG
19929426 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * * * *
19929456 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGAACTGAGGGTTGTGGTAGCAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGCGGTAGAAGGATCGA
* *
19929519 CAGCACGCAGAGGGGGACCAGA-CTGATCCCCAGCTTGCACATTATGCCTCTTCGGCCGACTCAG
64 CAGCACGCAGAGGGGGACCAGATC-GATCCCC-GCTTGCACATTCTGCCTCTTCGGCCGACTGAG
* * * *
19929583 CGCCCGCATGCTCATATCATGGGTTGACTTAG
127 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
19929615 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGTGGGTTACGGTAGAAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGAAGGATCGACA
* * * * ** * * *
19929680 GCACGAATG-GGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCCGACCGACTGAGCG
66 GCACGCA-GAGGGGGACCAGATCGATCCCCG-CTTGCACATTCTGCCTCTTCGGCCGACTGAGCG
* *
19929744 CCCGTACACTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
19929774 GCATACGTAGTTCATTCC
1 GCATACGGAGTTCATTCC
19929792 ATGCCTAAGC
Statistics
Matches: 265, Mismatches: 61, Indels: 19
0.77 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 54 0.20
159 203 0.77
160 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGAAGGATCGACA
GCACGCAGAGGGGGACCAGATCGATCCCCGCTTGCACATTCTGCCTCTTCGGCCGACTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:19930048 original size:185 final size:185
Alignment explanation
Indices: 19929615--19930054 Score: 442
Period size: 185 Copynumber: 2.4 Consensus size: 185
19929605 GTTGACTTAG
* * * ** * *
19929615 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGTGGGTTACGGTAG-AAGGATCGAT
1 GCATACGGAGTTCATTCCTAATCTAAGATCAAACCAGACCGAAGGTTACGGCAGTAA-GATCGAC
* * **
19929679 AGCACGAATGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCCGACCGACTGAGCG
65 AGCACGAATGGGGGGACCGAGCCGATCCTCGACTTGCACATTCTACCTCTCCGACCGACTGAGCG
** * * * *
19929744 CCCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGTAGTTCATTCCATGCCTAA
130 CCCACACACTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCATGCCTAA
* * ** * * *
19929800 GCATATGGAGTTCATT-CTCAGTCTAAGATTGAACCGGACCGAAGGTTACGACAGCT-GGATCGA
1 GCATACGGAGTTCATTCCT-AATCTAAGATCAAACCAGACCGAAGGTTACGGCAG-TAAGATCGA
* * **
19929863 CAGCACG-TTGGGGGGGACCGAGCCGATCCAT-GCCTTGCACATTCTACCTCTCCGGTCGACTGA
64 CAGCACGAAT-GGGGGGACCGAGCCGATCC-TCGACTTGCACATTCTACCTCTCCGACCGACTGA
* ** * *
19929926 GCGCCCACACGCTTGTTTCGTGGGTTGACATATGCATACGGAGTTCATCCCCA-GTCTAA
127 GCGCCCACACACTCATTTCGTGGGTTGACATAGGCATACGGAGTTCAT-CCCATGCCTAA
* * * * *
19929985 TCATACGGAGTTCATTCCTATTCTAAGATCAAACCAGATCAAAGGTTGCGGCAGTAAGATCGACA
1 GCATACGGAGTTCATTCCTAATCTAAGATCAAACCAGACCGAAGGTTACGGCAGTAAGATCGACA
19930050 GCACG
66 GCACG
19930055 GATGAGGGTT
Statistics
Matches: 203, Mismatches: 44, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
184 3 0.01
185 194 0.96
186 6 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCTAATCTAAGATCAAACCAGACCGAAGGTTACGGCAGTAAGATCGACA
GCACGAATGGGGGGACCGAGCCGATCCTCGACTTGCACATTCTACCTCTCCGACCGACTGAGCGC
CCACACACTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCATGCCTAA
Found at i:19930512 original size:26 final size:26
Alignment explanation
Indices: 19930461--19930513 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19930451 GTTGGCTTAG
* *
19930461 GCATACGGTGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
19930487 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
19930513 G
1 G
19930514 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:19937141 original size:26 final size:26
Alignment explanation
Indices: 19937105--19937157 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19937095 GTTGACTTAG
19937105 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
19937131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19937157 G
1 G
19937158 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19937515 original size:159 final size:157
Alignment explanation
Indices: 19937131--19937540 Score: 392
Period size: 159 Copynumber: 2.6 Consensus size: 157
19937121 CCTAGTCTAA
* * * * *
19937131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
* * * * ** * * * * **
19937196 GCACGCAGGGGGTACCGAGCCAATCCCCGGTTTGTGCATTCTGCCTCTCCGACCAGTTGAGTGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCATGCGCATTATGCCTCTCCGACCAGCTCAACGCC
**
19937261 CGTACGTCCATTTCATGGGTTGGCTTAG
130 CGTACGTCCATTTCATGGGTTCACTTAG
* * ** * * * ** * *
19937289 GCATAAGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGATCGAGGGCTATGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * ** *
19937353 AGCACACAGAGGGGGATTGGGCCGATCCCCGGCATGCGTATTATGCCTCTCCGGTCGGCTCAACG
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCATGCGCATTATGCCTCTCCGACCAGCTCAACG
** *
19937418 CCCGTACG-CTTGTTTCTTGGGTTCACTTAG
128 CCCGTACGTC-CATTTCATGGGTTCACTTAG
*
19937448 GCATACGGAGTTCATTCCTAGTCCAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
19937513 GCACGCAGGGGGGATCGGGCCGATCCCC
65 GCACGCAGGGGGGATCGGGCCGATCCCC
19937541 TGCTTACGCA
Statistics
Matches: 193, Mismatches: 53, Indels: 12
0.75 0.21 0.05
Matches are distributed among these distances:
157 5 0.03
158 69 0.36
159 116 0.60
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCATGCGCATTATGCCTCTCCGACCAGCTCAACGCCC
GTACGTCCATTTCATGGGTTCACTTAG
Found at i:19937605 original size:158 final size:155
Alignment explanation
Indices: 19937131--19937632 Score: 459
Period size: 158 Copynumber: 3.2 Consensus size: 155
19937121 CCTAGTCTAA
* * * * *
19937131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
* * * * * * * *
19937196 GCACGCAGGGGGTACCGAGCCAATCCCCGGTTTGTGCATTCTGCCTCTCCGACCAGTTGAGTGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAG-CCGGTTGAGTGCC
* * *
19937261 CGTACGTCCATTTCATGGGTTGGCTTAG
129 CGTACCT-CGTTTCATGGGTCGGCTTAG
* * ** * * * ** * *
19937289 GCATAAGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGATCGAGGGCTATGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * * * * **
19937353 AGCACACAGAGGGGGATTGGGCCGATCCCCGGCATGCGTATTATGCCTCTCCGGTCGGCTCAACG
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CAGCCGGTTGAGTG
* * *
19937418 CCCGTACGCTTGTTTCTTGGGTTC-ACTTAG
127 CCCGTAC-CTCGTTTCATGGG-TCGGCTTAG
*
19937448 GCATACGGAGTTCATTCCTAGTCCAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
* * *
19937513 GCACGCAGGGGGGATCGGGCCGATCCCCTGCTTACGCATTCTACCTCTCTAGCCGGTTGAGTGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC-AGCCGGTTGAGTGCC
*
19937578 CGCACACTCGTTTCATGGGTCGGCTTAG
129 CGTAC-CTCGTTTCATGGGTCGGCTTAG
19937606 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
19937633 CATACGGAGT
Statistics
Matches: 261, Mismatches: 72, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 9 0.03
158 135 0.52
159 110 0.42
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGCCGGTTGAGTGCCCG
TACCTCGTTTCATGGGTCGGCTTAG
Found at i:19937656 original size:26 final size:26
Alignment explanation
Indices: 19937606--19937658 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19937596 GTCGGCTTAG
*
19937606 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
19937632 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
19937658 G
1 G
19937659 ATTACACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:19938248 original size:159 final size:154
Alignment explanation
Indices: 19938076--19938659 Score: 470
Period size: 159 Copynumber: 3.8 Consensus size: 154
19938066 GCAAGATTGG
* *
19938076 CAGCACGCAGGGGGGACCAAGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGATGAGTG
1 CAGCACGCAGGGGGGA-C-AG-CGA-CCTCGACTTGCGCATTCTGCCTCTTCAGTCGGATGAGCG
* *
19938141 CCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
62 CCC-GCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * *
19938206 CGGACCGAAGGTTGTGGTAACGGGATCGA
126 CGGACCGAGGGTTGAGGCAACGGGATCGA
* * * * * * * *
19938235 CAGCACGCGGGGGGGATC-GGGA--TAGGCTTGCACATTCTACCT-TTCCAGCCGG-TGAGCACC
1 CAGCACGCAGGGGGGA-CAGCGACCTCGACTTGCGCATTCTGCCTCTT-CAGTCGGATGAGCGCC
* ** * * *
19938295 CGCACACCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCGG
64 CGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * *
19938360 ACCGAGGGTTGAGGCAGCGAGACCGA
129 ACCGAGGGTTGAGGCAACGGGATCGA
* * * * * * *
19938386 CAGCACACAGAGGGGGACTGGCCCGATCCCCAATTTGCGCATTATGCCTCTTCAGTCGGATCAGC
1 CAGCACGCAG-GGGGGAC-AG--CGA-CCTCGACTTGCGCATTCTGCCTCTTCAGTCGGATGAGC
* * ** * **
19938451 GCCCGCACACTCTTTTCATGGGTTAACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAG
61 GCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG
* * * * *
19938514 ATCGGACTGAGGGTTGCGACAACAGGATCGG
125 -TCGGACCGAGGGTTGAGGCAACGGGATCGA
* * * * *
19938545 CAGCACGCAGGGGGG-CAG-G-GCT-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
1 CAGCACGCAGGGGGGACAGCGACCTCGACTTGCGCATTCTGCCTCTTCAGTCGGATGAGCGCCCG
* * * * * **
19938606 CACGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCACCTCTAAGC
66 CACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
19938660 ATACGGAGTT
Statistics
Matches: 332, Mismatches: 78, Indels: 38
0.74 0.17 0.08
Matches are distributed among these distances:
149 3 0.01
150 72 0.22
151 88 0.27
152 15 0.05
153 23 0.07
155 2 0.01
156 3 0.01
157 2 0.01
158 26 0.08
159 96 0.29
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (154 bp):
CAGCACGCAGGGGGGACAGCGACCTCGACTTGCGCATTCTGCCTCTTCAGTCGGATGAGCGCCCG
CACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
CGAGGGTTGAGGCAACGGGATCGA
Found at i:19938682 original size:26 final size:26
Alignment explanation
Indices: 19938632--19938684 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19938622 GTTGGCTTAG
*
19938632 GCATACGGAGTTCATTCCACCTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
*
19938658 GCATACGGAGTTTATTCC-CAATCTAA
1 GCATACGGAGTTCATTCCAC-ATCTAA
19938684 G
1 G
19938685 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:19939671 original size:159 final size:160
Alignment explanation
Indices: 19939370--19939874 Score: 406
Period size: 159 Copynumber: 3.2 Consensus size: 160
19939360 CTTAGTCTAA
* * * * ** **
19939370 GCATACGGAGTTCATTACCA-GTCTAAG-ATCAGACTGGATCGAGGATTGCGGCAGCTGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGATCGAGGGTTACGATAGCAAGATCGA
* * * * * ** * * * *
19939433 CAGCACGAAG-GGGGGATCGGGCCGA-TCCCCGGCTTGTGCATTCTGCCTCTTC-GGTCGACTGA
65 CAGCACGCAGCGGGTGACCAGG-CTATTCCCCGGCTTGCACATTATGCCTCTCCAGCT-GGCTGA
*
19939495 GCGCCTGCACG-TCCATTTCGTGGGTTGGCTTAG
128 GCGCCCGCACGCT-CATTTCGTGGGTTGGCTTAG
* * ** *
19939528 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGTAGCAAGATC-AG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGATCGAGGGTTACGATAGCAAGATCGA-
* * * * * *
19939591 TAGCACGCAGACGGG-GACCGGGCTGA-TCCTCGTCTTGCGCATTATGCCTCTCCAG-TCGGCTT
65 CAGCACGCAG-CGGGTGACCAGGCT-ATTCCCCGGCTTGCACATTATGCCTCTCCAGCT-GGCTG
** *
19939653 AGCGCCCGCGTGCTCATTTCGTGGGTTGACTTAG
127 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *** *
19939687 GCATACGAAGTTCATTCCCA-GTCTAAG-ATTGGACCGGATCGAGGGTTACGATAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGATCGAGGGTTACGATAGCAAGATCGA
* * * * *
19939750 CAGCACGGAGGGGGTGACCAGGCTATTCCCCGGCTTGCACATTCTGTCTCTCCTGCTGGCTGAGC
65 CAGCACGCAGCGGGTGACCAGGCTATTCCCCGGCTTGCACATTATGCCTCTCCAGCTGGCTGAGC
** *
19939815 GTTCGCACGCTCATTTCGTGTGTTGGCTTAG
130 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
19939846 GCATATGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
19939875 TACGAAGTTC
Statistics
Matches: 278, Mismatches: 53, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 61 0.22
159 202 0.73
160 11 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGATCGAGGGTTACGATAGCAAGATCGAC
AGCACGCAGCGGGTGACCAGGCTATTCCCCGGCTTGCACATTATGCCTCTCCAGCTGGCTGAGCG
CCCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:19940296 original size:26 final size:26
Alignment explanation
Indices: 19940265--19940317 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19940255 GTTGACTTAG
*
19940265 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19940291 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19940317 G
1 G
19940318 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19940436 original size:183 final size:184
Alignment explanation
Indices: 19940158--19940502 Score: 428
Period size: 183 Copynumber: 1.9 Consensus size: 184
19940148 GCAGGACCGG
* * * * *
19940158 CAGCGGGATCGATAGCACGCAGAGGGGGCCGGGCTGATCCCCGACTTACGCATTGTGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCA
* * *
19940223 GCTGGCTGAGCACCCATACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GT
66 ACCGGCTGAGCACCCATACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGT
* * *
19940287 GTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGA
130 CTAAGCACACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGA
* * *
19940342 CAGCAGGATCGACAGCACGTAG-GGGGATCGGG-TCGATCCCC-AGCTTGCGCATTCTGCCTCTC
1 CAGCAGGATCGACAGCACGCAGAGGGGACCGGGCT-GATCCCCGA-CTTACGCATTCTGCCTCTC
* * * * * *
19940404 CAACCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCGTACGTAGTTCATTCCATG
64 CAACCGGCTGAGCACCCATACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATG
* * *
19940469 TCTAAGCACATAGAGTTCATTCCTAGTTTAAGAT
129 TCTAAGCACACAGAGTTCATTCCCAGTCTAAGAT
19940503 TTTGAGCCAC
Statistics
Matches: 135, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
182 5 0.04
183 111 0.82
184 19 0.14
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
CAGCAGGATCGACAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCA
ACCGGCTGAGCACCCATACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTC
TAAGCACACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGA
Found at i:19940864 original size:26 final size:26
Alignment explanation
Indices: 19940828--19940880 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19940818 GTTGACTTAG
*
19940828 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
19940854 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19940880 G
1 G
19940881 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19941145 original size:158 final size:157
Alignment explanation
Indices: 19940854--19941830 Score: 798
Period size: 158 Copynumber: 6.1 Consensus size: 157
19940844 CCCAGTCTAA
* * ** * * * *
19940854 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCCGAACCGTCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG-ATCGACA
* * * * * * ** * * **
19940919 GCACGTAAAGGGGGATCAGGCCGAT-CTTCAGCTTGTGCATTATGCCTCTTTGATCGGCTCAGTA
65 GCACG-CAGGGGGGATCGGGCCGGTCCCT-AGCTTGCGCATTATGCCTCTCCGATCGACTGAGCG
*
19940983 CCCGCACGCTCATTTCGTGGGTTGACTTAC
128 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * *
19941013 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGATCAACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGATCGACAG
* * * ** *
19941078 CACGCAGGGGCGGATCGGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTCTGCCCGACCGAGCGCC
66 CACGCAGGGG-GGATCGGGCCGGTCCCTAGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCC
* * *
19941143 CGCACGCTCGTTTCGTAGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGACTTAG
**
19941171 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGCCAGCAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGG-T-T--------G--CGG
* * * * *
19941234 CAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCTGAT-CCTCAGCTTGCGCATTATGCCTCTC
52 CAGC-AGATCGACAGCACGCAG-GGGGGATCGGGCCGGTCCCT-AGCTTGCGCATTATGCCTCTC
* * * * * *
19941298 CGATCGACTCAGTGCTCGCACGCTCATTTCATGTGTTGACTTTG
114 CGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * *
19941342 GCATACGAAGTTCATTCCAAGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGCACGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA-GATCGACA
* * * * ** ** * **
19941407 GCATGCAGGGGGGATCAGGTCAGTCCCTAGCTTGCGCATTATGCCTCTTTGGCCGGCTGAATGCC
65 GCACGCAGGGGGGATCGGGCCGGTCCCTAGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCC
* *
19941472 CGCACACTCGTTTCGTGGGTTGACTTAG
130 CGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
19941500 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGATCGAGGGTTGTGGCAGCAGGATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA-GATCGA-C
* * * * * * * * * * *
19941564 AGCACACAGGAGGGATCGGACTGATCCCTAGCTTGCACATTCTACCTCTCCGGTC-AGTTGAGCA
64 AGCACGCAGGGGGGATCGGGCCGGTCCCTAGCTTGCGCATTATGCCTCTCCGATCGA-CTGAGCG
* * *
19941628 CCCGCACACCCGTTTCGTGGGTTCG-CTTAG
128 CCCGCACGCTCATTTCGTGGGTT-GACTTAG
* *
19941658 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC-AGATCGACA
* * ** * *
19941723 ACACGCAGGGGGCGACCGGGCCGGTCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAACGC
65 GCACGCAGGGGG-GATCGGGCCGGTCCCTAGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGC
* * *
19941788 CCGTACGCTCATTTCATGGATTGACTTAG
129 CCGCACGCTCATTTCGTGGGTTGACTTAG
19941817 GCATACGGAGTTCA
1 GCATACGGAGTTCA
19941831 CCTCCAATCA
Statistics
Matches: 644, Mismatches: 143, Indels: 62
0.76 0.17 0.07
Matches are distributed among these distances:
157 8 0.01
158 358 0.56
159 152 0.24
160 1 0.00
161 1 0.00
169 1 0.00
170 11 0.02
171 107 0.17
172 5 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGATCGACAG
CACGCAGGGGGGATCGGGCCGGTCCCTAGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:19941515 original size:329 final size:329
Alignment explanation
Indices: 19940917--19941830 Score: 828
Period size: 329 Copynumber: 2.8 Consensus size: 329
19940907 GCCGAACCGT
* * * * ** *
19940917 CAGCACGTAAAGGGGGATCAGGCCGATCTTCAGCTTGTGCATTATGCCTCTTTGATCGGCTCAGT
1 CAGCACGCAAAGGGGGACCAGGCCGATCCTCAGCTTGCGCATTATGCCTCTCCGATCGACTCAGT
* * * * *
19940982 ACCCGCACGCTCATTTCGTGGGTTGACTTACGCATATGGAGTTCATTCCCAGTCTAAGATCAGAT
66 ACCCGCACGCTCATTTCATGGGTTGACTTACGCATACGAAGTTCATTCCAAGTCTAAGATCAGAC
* * * * *
19941047 CGGACCGAGGGTTACGGCAGTAGATCAACAGCACGCAGGGGCGGATCGGGCCGGTCCCTGGCTTG
131 CGAACCGAGGGTTACGGCAGCAGATCAACAGCACGCAGGGGCGGATCAGGCCAGTCCCTAGCTTG
* * * *
19941112 CGCATTCTGCCTCTCTGCCCGACCGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATAC
196 CGCATTATGCCTCTCTGCCCGACCGAACGCCCGCACACTCGTTTCGTAGGTTGACTTAGGCATAC
19941177 GGAGTTCATT-CCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGCCAGCAGGACCGGCAGCGGG
261 GGAGTTCATTCCCA-GTCTAAGCCCTAGCCGGACCGAGGGTTGTGCCAGCAGGACCGGCAGCGGG
19941241 ATCGA
325 ATCGA
* *
19941246 CAGCACGCAGAGGGGGACCAGGCTGATCCTCAGCTTGCGCATTATGCCTCTCCGATCGACTCAGT
1 CAGCACGCAAAGGGGGACCAGGCCGATCCTCAGCTTGCGCATTATGCCTCTCCGATCGACTCAGT
* * * ** *
19941311 GCTCGCACGCTCATTTCATGTGTTGACTTTGGCATACGAAGTTCATTCCAAGTCTAAGATCGGAC
66 ACCCGCACGCTCATTTCATGGGTTGACTTACGCATACGAAGTTCATTCCAAGTCTAAGATCAGAC
* * * * *
19941376 CGAACTGAGGGTTGCGGCAGCACGATCGACAGCATGCAGGGG-GGATCAGGTCAGTCCCTAGCTT
131 CGAACCGAGGGTTACGGCAGCA-GATCAACAGCACGCAGGGGCGGATCAGGCCAGTCCCTAGCTT
* * * * * *
19941440 GCGCATTATGCCTCTTTGGCCGGCTGAATGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATA
195 GCGCATTATGCCTCTCTGCCCGACCGAACGCCCGCACACTCGTTTCGTAGGTTGACTTAGGCATA
** * * * * * *
19941505 CGGAGTTCATTCCCAGTCTAAGATC-GGACAGGATCGAGGGTTGTGGCAGCAGGATCAGCAGC--
260 CGGAGTTCATTCCCAGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGCCAGCAGGACCGGCAGCGG
19941567 -A-C-A
324 GATCGA
* * * * * * * *
19941570 CAG---G---A--GGGATC-GGACTGATCC-CTAGCTTGCACATTCTACCTCTCCGGTC-AGTTG
1 CAGCACGCAAAGGGGGACCAGG-CCGATCCTC-AGCTTGCGCATTATGCCTCTCCGATCGA-CTC
* * * * * * * * *
19941624 AGCACCCGCACACCCGTTTCGTGGGTTCG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
63 AGTACCCGCACGCTCATTTCATGGGTT-GACTTACGCATACGAAGTTCATTCCAAGTCTAAGATC
* * * * * * * * *
19941688 AGACCGGATCGAGGGTTGCGGCAGCAAGATCGACAACACGCAGGGG-GCGACCGGGCCGGTCCCC
127 AGACCGAACCGAGGGTTACGGCAGC-AGATCAACAGCACGCAGGGGCG-GATCAGGCCAGTCCCT
* * ** * * * * * *
19941752 GGCTTGCGCATTATGCCTCTCCGATCGGCTGAACGCCCGTACGCTCATTTCAT-GGATTGACTTA
190 AGCTTGCGCATTATGCCTCTCTGCCCGACCGAACGCCCGCACACTCGTTTCGTAGG-TTGACTTA
19941816 GGCATACGGAGTTCA
254 GGCATACGGAGTTCA
19941831 CCTCCAATCA
Statistics
Matches: 487, Mismatches: 88, Indels: 32
0.80 0.14 0.05
Matches are distributed among these distances:
315 4 0.01
316 126 0.26
317 79 0.16
318 1 0.00
321 1 0.00
324 4 0.01
325 1 0.00
326 1 0.00
328 1 0.00
329 249 0.51
330 20 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (329 bp):
CAGCACGCAAAGGGGGACCAGGCCGATCCTCAGCTTGCGCATTATGCCTCTCCGATCGACTCAGT
ACCCGCACGCTCATTTCATGGGTTGACTTACGCATACGAAGTTCATTCCAAGTCTAAGATCAGAC
CGAACCGAGGGTTACGGCAGCAGATCAACAGCACGCAGGGGCGGATCAGGCCAGTCCCTAGCTTG
CGCATTATGCCTCTCTGCCCGACCGAACGCCCGCACACTCGTTTCGTAGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCCCTAGCCGGACCGAGGGTTGTGCCAGCAGGACCGGCAGCGGGA
TCGA
Found at i:19943434 original size:510 final size:510
Alignment explanation
Indices: 19942555--19943492 Score: 1117
Period size: 510 Copynumber: 1.8 Consensus size: 510
19942545 AGCACGCAGG
* * * * **
19942555 GGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCTGGTTGAGCACCCGCACGCCCG
1 GGGACCGGGCTGATCCCCGACTTGCGCATTCTCCCTCTCTGGCCGGTTGAGCACCCGCAAACCCG
** * * **
19942620 TTTTGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGAT
66 TTTCATGGGTTGGCTTAGGCATAGAGAGTTCACTCCAAGTCTAAGCCCCAACCAGACAAAGGGAT
* * * * * *
19942685 GTGGCAGCGAGACCGATAACATGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCCT
131 GTGGCAACGAGACCGACAACACGCAGAGAGGGACCGGGCCGATCCCTAGCTTGCACATTATGCCT
* * * *
19942750 CTCCGGCCGGCTCAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCC
196 CTCCGGCCGGCTCAGCACCCGCACACTCATTTCATGGGTTAAATTAGGCATACAAAGTTCATTCC
* * ** * * *
19942815 CAATCTAAGATTATACCAGATCGAGGATTGTGACAGTAGGATCGACAGCACGCAGGGGGGACCGG
261 CAATCTAAAATTAGACCAGATCGAGGATTGCAACAGCAGGATCAACAGCACGAAGGGGGGACCGG
* * * * * * * ** ** * *
19942880 ATCGGTCCCCGACTTGCGCCTTCTACCTCTATGGCTGGCTGAGCGCTCGCATGCTCGTTTCGTGG
326 ATCGATCCCCGACTTACGCATTCTACCTCTACGGCCGACTGAGCGCCCAAACACACATTTCGTGG
*
19942945 GTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCAAAGAT
391 GTTAGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCAAAGAT
19943010 CGGACTGGACTGAGGGTTGCAGCAGCAGAACCAGTAGCAGGATCGATAGCACATA
456 CGGACTGGACTGAGGGTTGCAGCAGCAGAACCAGTAGCAGGATCGATAGCACATA
* *
19943065 GGGACCGGG-TCGATCCCCGACTTGCGCATTCTCCCTTTCTGGCCGGTTGAGCATCCGCAAACCC
1 GGGACCGGGCT-GATCCCCGACTTGCGCATTCTCCCTCTCTGGCCGGTTGAGCACCCGCAAACCC
* * * * * * *
19943129 GTTTCATGGGTTGGTTTGGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGACAAATGGT
65 GTTTCATGGGTTGGCTTAGGCATAGAGAGTTCACTCCAAGTCTAAGCCCCAACCAGACAAAGGGA
* * * * * *
19943194 TGTGGCAATGGGACCGGCAGCACGCGGAGAGGGACCGGGCCGATCCCTAGCTTGCGCATTATGCC
130 TGTGGCAACGAGACCGACAACACGCAGAGAGGGACCGGGCCGATCCCTAGCTTGCACATTATGCC
** ** **
19943259 TCTCCGGTTGGCTCAGTGCCCGCACACTCATTTCATGGGTTAAATTAGGCATACGGAGTTCATTC
195 TCTCCGGCCGGCTCAGCACCCGCACACTCATTTCATGGGTTAAATTAGGCATACAAAGTTCATTC
* * * * * *
19943324 CCAGTCTAAAATTAGACCGGA-CGAGGGTTGCAACTGCAGGATCAATAGCACGAAGGGGTGGATC
260 CCAATCTAAAATTAGACCAGATCGAGGATTGCAACAGCAGGATCAACAGCACGAAGGGG-GGACC
* * * * *
19943388 GG-GCTGATCTCTGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCAAACACACATTTCG
324 GGATC-GATCCCCGACTTACGCATTCTACCTCTACGGCCGACTGAGCGCCCAAACACACATTTCG
* ** *
19943452 TGGGTTAGCTTAGGCGTTGGGAGTTCATTCCATGTCTAAGC
388 TGGGTTAGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
19943493 CCCAGCTGGA
Statistics
Matches: 346, Mismatches: 79, Indels: 6
0.80 0.18 0.01
Matches are distributed among these distances:
509 31 0.09
510 315 0.91
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (510 bp):
GGGACCGGGCTGATCCCCGACTTGCGCATTCTCCCTCTCTGGCCGGTTGAGCACCCGCAAACCCG
TTTCATGGGTTGGCTTAGGCATAGAGAGTTCACTCCAAGTCTAAGCCCCAACCAGACAAAGGGAT
GTGGCAACGAGACCGACAACACGCAGAGAGGGACCGGGCCGATCCCTAGCTTGCACATTATGCCT
CTCCGGCCGGCTCAGCACCCGCACACTCATTTCATGGGTTAAATTAGGCATACAAAGTTCATTCC
CAATCTAAAATTAGACCAGATCGAGGATTGCAACAGCAGGATCAACAGCACGAAGGGGGGACCGG
ATCGATCCCCGACTTACGCATTCTACCTCTACGGCCGACTGAGCGCCCAAACACACATTTCGTGG
GTTAGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCAAAGAT
CGGACTGGACTGAGGGTTGCAGCAGCAGAACCAGTAGCAGGATCGATAGCACATA
Found at i:19943648 original size:159 final size:158
Alignment explanation
Indices: 19943130--19943641 Score: 394
Period size: 159 Copynumber: 3.2 Consensus size: 158
19943120 CGCAAACCCG
** * * * * * *
19943130 TTTCATGGGTTGGTTTGGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGACAAATGGTT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC-GAGGGTT
** * * *
19943195 GTGGCAATGGGACCGGCAGCACGCGGAGAGGGACCGGGCCGATCCCTA-GCTTGCGCATTATGCC
65 GTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCCGAT-CC-AGGCTTGCGCATTATGCC
* * * **
19943259 TCTCCGG-TTGGCTCAGTGCCCGCACACTCA
128 TCTCCGGCCTGACTCAGCGCCCAAACACTCA
* * ****
19943289 TTTCATGGGTTAAATTAGGCATACGGAGTTCATTCCCA-GTCTAA-AATTAGACCGGACGAGGGT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACGAGGGT
*** * * *** * * * * * * *
19943352 TGCAACTGC-AGGATCAATAGCACGAAG-GGGTGGATCGGGCTGATCTCTGACTTACGCATTCTG
64 TGTGGCAGCGA-GACCGGCAGCACGCAGAGGG-GGACCGGGCCGATC-CAGGCTTGCGCATTATG
* *
19943415 CCTCTCCGGCC-GACTGAGCGCCCAAACACACA
126 CCTCTCCGGCCTGACTCAGCGCCCAAACACTCA
* * ** *
19943447 TTTCGTGGGTT-AGCTTAGGCGTTGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGT
1 TTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CGAGGGT
*
19943511 TGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGACCGATCCAAGGCTTGCGCATTATGCC
64 TGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCC-AGGCTTGCGCATTATGCC
* * ** *
19943576 TCTCCGGCCTGCCT-AGCACCCTTACGCTCA
128 TCTCCGGCCTGACTCAGCGCCCAAACACTCA
19943606 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
19943642 CAGTCTACGA
Statistics
Matches: 261, Mismatches: 76, Indels: 32
0.71 0.21 0.09
Matches are distributed among these distances:
157 7 0.03
158 104 0.40
159 139 0.53
160 11 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACGAGGGTTG
TGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCAGGCTTGCGCATTATGCCTCT
CCGGCCTGACTCAGCGCCCAAACACTCA
Found at i:19944047 original size:170 final size:170
Alignment explanation
Indices: 19943747--19944078 Score: 368
Period size: 170 Copynumber: 1.9 Consensus size: 170
19943737 TTCATCTGGT
*
19943747 TGAGCGCCCGTACGCTTCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
1 TGAGCGCCCGTACGCTTCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAC
* * * * * * ** *
19943812 CAGATCGAACCGATGGTTGCGGTAGCAAGACTAACAGCAAGATCGGTAGCACGCAGGGGGGGATC
66 CAGACCGAACCAAGGGTTGCGGTAGCAAGACCAACAGCAAGATCAGCAGCACGCAAAGAGGGATC
** *
19943877 GGGCTGA-CCCCGGCTTGCACATTCTGCCTCTTTGACCGGC
131 GGGCT-ACCCCCGGCTCACACATTATGCCTCTTTGACCGGC
19943917 TGAGCGCCCGTACGC-TCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG
1 TGAGCGCCCGTACGCTTC-TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
* * * * * ** * * *
19943980 CACCAG-CCGGATCAAGGGTTGTGGCT-GTAGGACCGGCAGTAGGATCAGCAGCACGTAAAGAGG
64 -ACCAGACCGAACCAAGGGTTGCGG-TAGCAAGACCAACAGCAAGATCAGCAGCACGCAAAGAGG
19944043 GATCGGGCTACTCCCCGGCTCACACATTATGCCTCT
127 GATCGGGCTAC-CCCCGGCTCACACATTATGCCTCT
19944079 CCAACCGACC
Statistics
Matches: 133, Mismatches: 23, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
169 6 0.05
170 101 0.76
171 26 0.20
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (170 bp):
TGAGCGCCCGTACGCTTCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAC
CAGACCGAACCAAGGGTTGCGGTAGCAAGACCAACAGCAAGATCAGCAGCACGCAAAGAGGGATC
GGGCTACCCCCGGCTCACACATTATGCCTCTTTGACCGGC
Found at i:19944369 original size:26 final size:26
Alignment explanation
Indices: 19944333--19944385 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19944323 GTTGGCTTAG
19944333 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
19944359 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19944385 G
1 G
19944386 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19944538 original size:194 final size:196
Alignment explanation
Indices: 19944097--19944554 Score: 541
Period size: 196 Copynumber: 2.3 Consensus size: 196
19944087 CCTCTTTGGT
* * * ** * *
19944097 CGGTTGAGCGCCCACATGCTTGTTTCATGGGTTGGCTTAGGCATACAAAGTTTATTCCATGCCTA
1 CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * *
19944162 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACTTAAGGTTGTAGCAACAGGACCAGC
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGGAGCAACAGGACCAGC
* * * * * * *
19944227 AGCAGGATCAGTAGCACGTAGGGGGGATCGGGCTAATCCTCGACTTGGGCATTCTGCCTCTCCGA
131 AGCAAGATCAGCAGCACGTAGAGGGGATCGGGCCAATCCACGACTTGCGCATTCTACCTCTCCGA
19944292 C
196 C
* * * *
19944293 CGGCTGAGCGGCCGCACGCTCGTTTCCTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
** * *
19944358 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCGAGGGTTGCGA-CAGCAGGACCA
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GAAGGTTG-GAGCAACAGGACCA
* * *
19944421 GCA-TAAGATC-GACAGTACGTA-AGGGGA-CTGGGCCAATCCACGGCTTGCGCATTCTACCTCT
129 GCAGCAAGATCAG-CAGCACGTAGAGGGGATC-GGGCCAATCCACGACTTGCGCATTCTACCTCT
19944482 CCGAC
192 CCGAC
* * * *
19944487 TGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTA
1 CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
19944552 AGC
66 AGC
19944555 CCTAGCCAGA
Statistics
Matches: 222, Mismatches: 36, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
193 1 0.00
194 99 0.45
195 13 0.06
196 108 0.49
197 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGGAGCAACAGGACCAGC
AGCAAGATCAGCAGCACGTAGAGGGGATCGGGCCAATCCACGACTTGCGCATTCTACCTCTCCGA
C
Found at i:19944892 original size:26 final size:26
Alignment explanation
Indices: 19944856--19944908 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19944846 GTTGGTTGAG
19944856 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
19944882 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
19944908 G
1 G
19944909 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19945224 original size:522 final size:522
Alignment explanation
Indices: 19944276--19945405 Score: 1473
Period size: 522 Copynumber: 2.2 Consensus size: 522
19944266 TCGACTTGGG
*** * * *
19944276 CATTCTGCCTCTCCGACCGGCTGAGCGGCCGCACGCTCGTTTCCTAGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGGTAGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATAC-G
* * *
19944341 AGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT
65 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTT
* * * * * *
19944406 GCGACAGCAGGACCAGCATAAGATCGACAGTACGTAAGGGGACTGGGCCAATCCACGGCTTGCGC
130 GCGACAGCAGGACCAACACAAGATCGACAGCACGCAAGGGGACCGGCCCAATCCACGGCTTGCGC
* * * * *
19944471 ATTCTACCTCTCCGACTGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
195 ATTCTACCTCTCCGACCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGA
* * * * * * *
19944536 GTTCATTCCATATCTAAGCCCTAGCCAGACTGAGGGTTGTGGCAGTAGGACCGGCAGCGGGTTCG
260 GTTCATTCAATATCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGCAACGGGATCG
* * **
19944601 ATAGCACGCAGAGGGGGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAG
325 ATAGCACGCAGAGGGGGATCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCAGCTCAG
** * *
19944666 CGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGACTTCATTCTTAGTCTAAGATCGGA
390 CGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGACTTCATTCCCAGTCTAAGACCAGA
* * ** *
19944731 CC-GAACCGAGGGTTACGGCAGTAGGATCGACAGCACGTAGGGGGGACCGGGCCGGTCCCCGGCT
455 CCAG-ACCAAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGAACCCAGGCT
*
19944795 TGCC
519 TGCA
* * * *
19944799 CATTTTGCCTCTCCGGTAGACTGAGCGCCCACACACTCGTTTCGTGGGTTGG-TTGAGGCATACA
1 CATTCTGCCTCTCCGGTAGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTT-AGGCATAC-
*
19944863 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGG-TCCAAGGG
64 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-CAAGGG
** * *
19944927 TTGCGGTAGCAGGACCAACACAGGAT-GACAGCACGC-AGAGGGACCGGCCCAATCCGTC-GCTT
128 TTGCGACAGCAGGACCAACACAAGATCGACAGCACGCAAG-GGGACCGGCCCAATCC-ACGGCTT
* * *
19944989 GTGCATTCTGCCTCTCCGGCCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
191 GCGCATTCTACCTCTCCGACCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
* *
19945054 CAGAGTTCATTCAATTTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCAGCAACGGG
256 CAGAGTTCATTCAATATCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGCAACGGG
* * * * *
19945119 ATCGATAGCACGTAGAGGGGGATC-AGGCCGATCCCTGGCTTGTACATTATGCCTCTCCGACCGG
321 ATCGATAGCACGCAGAGGGGGATCGA-GCCGATCCCCGACTTGCACATTATGCCTCTCCGACCAG
* * *
19945183 CTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGA
385 CTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGACTTCATTCCCAGTCTAAGA
* * * *
19945248 CCAGACCAGACCAAGGGTTGCGGTAGTAGGATCGATAGCACGCAGGGGGGACCGGGTCGAACCCA
450 CCAGACCAGACCAAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGAACCCA
*
19945313 TGCTTGCA
515 GGCTTGCA
* * * * *
19945321 CATTCTGCCTCTCTGTTCGACTGAGCGCCCGCACGCTCGTTTTGTCGGTTGGCTTAGGCATACGA
1 CATTCTGCCTCTCCGGTAGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACG-
19945386 AGTTCATTCCATGTCTAAGC
65 AGTTCATTCCATGTCTAAGC
19945406 CCCAGCCGGA
Statistics
Matches: 522, Mismatches: 77, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
521 4 0.01
522 385 0.74
523 133 0.25
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (522 bp):
CATTCTGCCTCTCCGGTAGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGA
GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTG
CGACAGCAGGACCAACACAAGATCGACAGCACGCAAGGGGACCGGCCCAATCCACGGCTTGCGCA
TTCTACCTCTCCGACCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAG
TTCATTCAATATCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGCAACGGGATCGA
TAGCACGCAGAGGGGGATCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCAGCTCAGC
GCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGACTTCATTCCCAGTCTAAGACCAGAC
CAGACCAAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGAACCCAGGCTTG
CA
Found at i:19945259 original size:171 final size:167
Alignment explanation
Indices: 19944882--19945270 Score: 406
Period size: 171 Copynumber: 2.3 Consensus size: 167
19944872 CCATGTCTAA
* * * * *
19944882 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGTCCAAGGGTTGCGGTAGCAGGACCAACA
1 GCATACGGAGTTCATTCCAAGTCTAAGACCAGACCAGACCAAGGGTTGCGGCAGCAGGACCAACA
* * * * *
19944947 CAGGATGACAGCACGCAGAGGGACCGGCCCAATCCGTCGCTTGTGCATTCTGCCTCTCCGGCCGA
66 CAGGATGACAGCACGCAGAGGGACAGGCCCAATCCCTCGCTTGTACATTATGCCTCTCCGACCGA
* * * *
19945012 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
131 CTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * * * *
19945049 GCATACAGAGTTCATT-CAATTTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGATCAG
1 GCATACGGAGTTCATTCCAA-GTCTAAG-ACCAGACCAGACCAAGGGTTGCGGCAGCAGGACCAA
* * * * *
19945112 CAACGGGATCGATAGCACGTAGAGGGGGATCAGG-CCGATCCCTGGCTTGTACATTATGCCTCTC
64 C-ACAGGAT-GACAGCACGCAGA--GGGA-CAGGCCCAATCCCTCGCTTGTACATTATGCCTCTC
* * * * *
19945176 CGACCGGCTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAT
124 CGACCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
*
19945220 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCAAGGGTTGCGG
1 GCATACGGAGTTCATTCCAAGTCTAAGACCAGACCAGACCAAGGGTTGCGG
19945271 TAGTAGGATC
Statistics
Matches: 176, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
166 2 0.01
167 45 0.26
168 9 0.05
169 11 0.06
170 4 0.02
171 100 0.57
172 5 0.03
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (167 bp):
GCATACGGAGTTCATTCCAAGTCTAAGACCAGACCAGACCAAGGGTTGCGGCAGCAGGACCAACA
CAGGATGACAGCACGCAGAGGGACAGGCCCAATCCCTCGCTTGTACATTATGCCTCTCCGACCGA
CTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:19945425 original size:158 final size:159
Alignment explanation
Indices: 19945117--19945404 Score: 357
Period size: 158 Copynumber: 1.8 Consensus size: 159
19945107 ATCAGCAACG
* * * *
19945117 GGATCGATAGCACGTAGAGGGGGATCAGGCCGATCCCTGGCTTGTACATTATGCCTCTCCGACCG
1 GGATCGATAGCACGCAGAGGGGGACCAGGCCGAACCCTGGCTTGCACATTATGCCTCTCCGACCG
* * * * * *
19945182 GCTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
66 ACTCAGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
19945247 ACCAGACCAGACCAAGGGTTGCGGTAGTA
131 ACCAGACCAGACCAAGGGTTGCGGTAGTA
* * * * **
19945276 GGATCGATAGCACGCAG-GGGGGACCGGGTCGAACCCAT-GCTTGCACATTCTGCCTCTCTGTTC
1 GGATCGATAGCACGCAGAGGGGGACCAGGCCGAACCC-TGGCTTGCACATTATGCCTCTCCGACC
* * * *
19945339 GACTGAGCGCCCGCACGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTA
65 GACTCAGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTA
19945403 AG
129 AG
19945405 CCCCAGCCGG
Statistics
Matches: 107, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.03
158 87 0.81
159 17 0.16
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (159 bp):
GGATCGATAGCACGCAGAGGGGGACCAGGCCGAACCCTGGCTTGCACATTATGCCTCTCCGACCG
ACTCAGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
ACCAGACCAGACCAAGGGTTGCGGTAGTA
Found at i:19945958 original size:159 final size:159
Alignment explanation
Indices: 19945712--19946089 Score: 391
Period size: 159 Copynumber: 2.4 Consensus size: 159
19945702 GGTCGGTTGT
* * * * *
19945712 GCGCCCACACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAAGCCCCA
1 GCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAA
* * ** * * * ** *
19945777 GCCGGACCGAGGGTTATGGCAGCGGGACTGACAACATGTAAAAGTTGATCGGGTCGATCCTCGAC
66 ACCGGACCGAAGGTTACAGCAGCAGGACTGACAACACGCAAAAGGGGATCGGGTCGATCCCCGAC
* * * *
19945842 TTGCGCATTATGCCTCTTCGGCCTG-CTCA
131 TTGCGCATTATACCTCTCCGACC-GACGCA
* * * * * *
19945871 GCGCTCACACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCA
1 GCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCA
* * * * **
19945935 AACCGGACTGAAGGTTGCAGCAGCAGGATTGACAGCACGCATGAGGGGATCGGGTCGATCCCCGA
65 AACCGGACCGAAGGTTACAGCAGCAGGACTGACAACACGCAAAAGGGGATCGGGTCGATCCCCGA
* * *
19946000 CTTGCGTATTCTACCTCTCCGACCGACGGA
130 CTTGCGCATTATACCTCTCCGACCGACGCA
* * *
19946030 GTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
19946090 CATACGGAGT
Statistics
Matches: 174, Mismatches: 42, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
158 4 0.02
159 167 0.96
160 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (159 bp):
GCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAA
ACCGGACCGAAGGTTACAGCAGCAGGACTGACAACACGCAAAAGGGGATCGGGTCGATCCCCGAC
TTGCGCATTATACCTCTCCGACCGACGCA
Found at i:19946114 original size:26 final size:26
Alignment explanation
Indices: 19946063--19946115 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19946053 GTTGGCTTAG
*
19946063 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
19946089 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
19946115 G
1 G
19946116 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:19948841 original size:26 final size:26
Alignment explanation
Indices: 19948804--19948861 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
19948794 TGTGGGTTGA
19948804 CTAAGGCATACGGAGTTCATCCCTAGT
1 CTAA-GCATACGGAGTTCATCCCTAGT
*
19948831 CTAAGCATACGGAGTTCATTCCTAGT
1 CTAAGCATACGGAGTTCATCCCTAGT
19948857 CTAAG
1 CTAAG
19948862 ATCAGACCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATCCCTAGT
Found at i:19949892 original size:26 final size:26
Alignment explanation
Indices: 19949856--19949908 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19949846 GTTGACTTAG
19949856 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19949882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19949908 G
1 G
19949909 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19950879 original size:524 final size:499
Alignment explanation
Indices: 19949829--19950933 Score: 1218
Period size: 524 Copynumber: 2.2 Consensus size: 499
19949819 TTGAGTGCCT
* *
19949829 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGT
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGT
* * * *
19949893 TCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGCGGTAGCAGAATAGGCAGCATGTAGAGG
65 TCATTCCCAGTCTAAGATCAAACTGAACTGAGGGTTGCGATAGCAGAATAGACAGCACGTAGAGG
** * * * * *
19949958 GATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCCCATT
130 GATCGCATCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCAATT
* *
19950023 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGT
195 TCATGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCCAGACCGAGGGTTGT
* *
19950088 GGCAGCGGGACTGATAACACGCAGAGAGGGATCGGGTCGATCCCCAGCTTGCACATTATGCCTCT
260 GGCAGCAGGACTGACAACACGCAGAGAGGGATCGGGTCGATCCCCAGCTTGCACATTATGCCTCT
* *** *
19950153 CCGGTCGGTCAGCACTTGCACACTCCTTTGGTGGGTTGACTTAAACATACGGAGTTCATTCCCAA
325 CCGGCCGGTCAGCACCCACACACTCCTTTCGTGGGTTGACTTAAACATACGGAGTTCATTCCCAA
* * *
19950218 TCTAAGATTGGACCGAACCGAGGGTTACGATAGCAGGATCGACAGCACACAGGGGGGACCAGCCC
390 TCTAAGATCGGACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGACCAGCCC
* * * * * * *
19950283 GATCCCTGGCTTACGCATTTTGCCTCTCTGACGGGCTGAGCGCTC
455 GATCCCTGACTTACGCATTCTGCCTCTCGGACGGACTGAACACCC
** *
19950328 GCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-AAGTT
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
* *
19950392 CATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGTGATAGCAGGACCAGCAGTAGTATCAACA
66 CATTCCCAGTCTAAGATCAAACTGAACTGAGGGTTGCGATAGCA-G---A--A-TAG-----ACA
* *
19950457 GCACGTAGGGGGGATCGCATCGATCCTC-GACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
119 GCACGTA-GAGGGATCGCATCGATCCCCAG-CTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
*
19950521 CCGCACGCTAATTTCATGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCC-
182 CCGCACGCCAATTTCATGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCCA
* * *
19950585 GAATCGAGGGTTGTGGTAGCAGGACTGGCAACGGGATTGGCAGCACGTAGAGGGAGATCGGG-CT
247 G-ACCGAGGGTTGTGGCAGCAGGACTGACAAC---A----C-GCA-G-AGA-GG-GATCGGGTC-
* * *** * * * *
19950649 GATCCTCGGCTTGTGTATTATGCCTCTTCGGCCGGCTCAGCTCCCACACGCTCGTTTCGTGGGTT
298 GATCCCCAGCTTGCACATTATGCCTCTCCGGCCGG-TCAGCACCCACACACTCCTTTCGTGGGTT
** * * * ** *
19950714 GACTTATGCATAC-GATGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGTAG
362 GACTTAAACATACGGA-GTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTACGACAGCAG
* * * * ** *
19950778 GATTGATAGCACATAGAGGGGACCGGGTCGAT-CCTCGACTTACGCATTCTGCCTCTCCGGTC-G
426 GATCGACAGCACACAGAGGGGACCAGCCCGATCCCT-GACTTACGCATTCTGCCTCT-CGGACGG
19950841 ACTGAACACCC
489 ACTGAACACCC
* * * *
19950852 GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAATCCATGTCTAAGCATACGGAGCT
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
19950917 CATTCCCAGTCTAAGAT
66 CATTCCCAGTCTAAGAT
19950934 TTTGAGCCAT
Statistics
Matches: 498, Mismatches: 74, Indels: 42
0.81 0.12 0.07
Matches are distributed among these distances:
498 47 0.09
499 52 0.10
502 1 0.00
504 1 0.00
505 3 0.01
510 10 0.02
511 131 0.26
514 1 0.00
518 1 0.00
519 3 0.01
520 1 0.00
521 3 0.01
522 3 0.01
523 40 0.08
524 178 0.36
525 23 0.05
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (499 bp):
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAAACTGAACTGAGGGTTGCGATAGCAGAATAGACAGCACGTAGAGGG
ATCGCATCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCAATTT
CATGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
GCAGCAGGACTGACAACACGCAGAGAGGGATCGGGTCGATCCCCAGCTTGCACATTATGCCTCTC
CGGCCGGTCAGCACCCACACACTCCTTTCGTGGGTTGACTTAAACATACGGAGTTCATTCCCAAT
CTAAGATCGGACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGACCAGCCCG
ATCCCTGACTTACGCATTCTGCCTCTCGGACGGACTGAACACCC
Found at i:19951987 original size:160 final size:157
Alignment explanation
Indices: 19951628--19952128 Score: 487
Period size: 160 Copynumber: 3.2 Consensus size: 157
19951618 CCCAGTCTAA
* *
19951628 GCATAC-GAAGTTCATTCCCA-GTCTAAGATCAAACCGAACC-AGGGTTGCGATAGTAGGATCGG
1 GCATACAG-AGTTCATT-CCATGTCTAAGATCAAACCG-ACCGAGGGTTGCGATAGCAGGATCGA
* * *
19951690 TAGCACATAGGGGGGATCAAGGT-GATCCCCGGCTTGCGCATTCTGCCTCTC-CGACCGGCTGAG
63 TAGCACACAGGGGGGATCGA-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGA-CGGCTGAG
*
19951753 CGCCCGCACGCCCGTTTCGTGGATTGGCTTAG
126 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* ** * ** * * * *
19951785 GTATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCATGTCTAAGATCAAACC-GACCGAGGGTTGCGATAGCAGGATCGATA
* * * *
19951850 GCACGCAGAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGAAGGCTCAGCG
65 GCA--CACAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGACGGCTGAGCG
* *
19951915 CCCACACGCCCGTTTCGTGGGTTGACTTAG
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
19951945 GCATACACAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTACGACAACAGGATTGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAAACC-GACCGAGGGTTGCGATAGCAGGATCGAT
* * * * * *
19952009 AGCACACAGGGGGGACCG-GATCGATCCCCAGCATACGCATTCTGCCTCTCTGGCCGGCTGAG-A
64 AGCACACAGGGGGGATCGAG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGACGGCTGAGCG
** * *
19952072 CCCGTTCGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
19952102 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
19952129 CATACGGAGT
Statistics
Matches: 278, Mismatches: 55, Indels: 22
0.78 0.15 0.06
Matches are distributed among these distances:
156 6 0.02
157 72 0.26
158 72 0.26
159 2 0.01
160 121 0.44
161 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAAACCGACCGAGGGTTGCGATAGCAGGATCGATAG
CACACAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGACGGCTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:19952132 original size:26 final size:26
Alignment explanation
Indices: 19952102--19952154 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19952092 GTTGGCTTAG
19952102 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
19952128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19952154 G
1 G
19952155 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19953012 original size:26 final size:26
Alignment explanation
Indices: 19952983--19953035 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19952973 GTTGGCTTAG
*
19952983 GCATACGAAGTTTATTC-CATGTCTAA
1 GCATACGAAGTTCATTCGCA-GTCTAA
*
19953009 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCGCAGTCTAA
19953035 G
1 G
19953036 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCGCAGTCTAA
Found at i:19953738 original size:26 final size:26
Alignment explanation
Indices: 19953708--19953760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19953698 GTTGACTTAG
*
19953708 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19953734 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19953760 G
1 G
19953761 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19954531 original size:159 final size:159
Alignment explanation
Indices: 19954100--19954602 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 159
19954090 CCCAGTCTAA
* * * *
19954100 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACT-GGGCCGAGGGTTGTGGTAGTAGGATCGAC
1 GCATACAGAGTTCATTCCAAGTCTAAGATC-GAATCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * **
19954164 AACACGCA-AGGGGGACCGGGCTGATCCCCGGCTTGAT-CATTCTACCTCTCTGGCCGGCTAAAC
65 AGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTG-TGCATTCTGCCTCTCCGACCACCTAAAC
*
19954227 GCCCGCACGCCCATTTCGTGGGTTGGCTTAG
129 GCCCGAACGCCCATTTCGTGGGTTGGCTTAG
** * ** * ** * * *
19954258 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCA--ACGAGATTGA
1 GCATACAGAGTTCATTCCAAGTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGTA-G-GATCGA
* * ** * * * * * * * * *
19954321 TAGCACACAGAAAGGGACCGGGTTGATCCTCAGCTTGCGTATTATGGCTCTCCGATCACCTCAAT
64 CAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGACCACCTAAAC
* *
19954386 GCCTGAACGCTCATTTCGTGGGTTGTG-TTAG
129 GCCCGAACGCCCATTTCGTGGGTTG-GCTTAG
* *
19954417 GTATACAGAGTTCATTCCAAGTCTAAGATCGAATCGGACCGAGGGTTGTAGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCAAGTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGTAGGATCGACA
* * * * ** * **
19954482 GCACGCAGGGGGGGACCGGGCCGATCTTCGGCTTGTGCGTTCTGCCTCTCCGACCGGCTGAGTGC
66 GCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGACCACCTAAACGC
* *
19954547 CC-ACACGCTCATTTCATGGGTTGGCTTAG
131 CCGA-ACGCCCATTTCGTGGGTTGGCTTAG
* *
19954576 GCGTACGGAGTTCATT-CAATGTCTAAG
1 GCATACAGAGTTCATTCCAA-GTCTAAG
19954603 CATACGTAGT
Statistics
Matches: 260, Mismatches: 74, Indels: 21
0.73 0.21 0.06
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 54 0.21
159 200 0.77
160 2 0.01
161 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCAAGTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGACCACCTAAACGC
CCGAACGCCCATTTCGTGGGTTGGCTTAG
Found at i:19955377 original size:881 final size:872
Alignment explanation
Indices: 19953635--19955512 Score: 2210
Period size: 881 Copynumber: 2.1 Consensus size: 872
19953625 ACCACCCGTT
* * * ** **
19953635 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGATTGAGCGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* *
19953700 TGACTTAGGCATACGGAGTTCATCCCCAT-TCTAAGCATACGGAGTTCATTCCCAGTCT-A-A--
66 TGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
* * *
19953760 GATCAGACCGGATCGAGGGTTACGACAGCAGGATCGACAGCACGTAGGGGGGACAGGGCTGATCC
130 GATCAGACCGGATCGAGAGTTACGACAGCAGGATCGACAACACGTAGGGGGGACAGAGCTGATCC
* ** * *
19953825 CCGGCTTACGGATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTT
195 CCGACTTACACATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCCCATTTCATGGGTTAGCTT
* * *
19953890 AGGCATATGGCATTCATTCCATGCTAAGCCCTAGCCAGAACGAGGGTTGGGCAGCAGGACCGACA
260 AGGCATACGGCATTCATTCCATGCTAAGCCCCAGCCAGAACAAGGGTTGGGCAGCAGGACCGACA
* * * ** *
19953955 ACGAGATCGACAGCATGCAGAGGAGGATCGGGCTGATCCTTGGCTTGTGCATTATGCCTCTCCGG
325 ACGAGATCGACAGCACGCAGAGGAGGATCGGGCTGATCCTCGACTTACGCATTATGCCTCTCCGA
** * * * *
19954020 TTGGCCTCTCCGATCGGTTGAGCACCCACACACTCATTTCGTGGGTTGACTTAGGCATATGGAGT
390 TCAGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGT
* * * *
19954085 TTGTTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGGCCGAGGGTTGTG
455 TTGTCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTATG
* * * * ** *
19954150 GTAGTAGGATCGACAACACGCAAGGGGGACCGGGCTGATCCCCGGCTTGATCATTCTACCTCTCT
520 GCAGCAGGATCGACAACACGCAAGGGGGACCAGGCTGATCCCCAGCCCGAGCATTCTACCTCTCT
*
19954215 GGCCGGCTAAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
585 GGCCGACTAAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
** * **
19954280 CTAAGCCCCAGCCGAACCAAGGGTTGTGGCAACGAGATTGATAGCACACAGAAAGGGACCGGGTT
650 CTAAGCCCCAGCCGAACCAAGGGTTGTGGCAACGAGACCGACAGCACACAGAAAGGGACCGGGCC
* * * * *
19954345 GATCCTCAGCTTGCGTATTATGGCTCTCCGATCACCTCAATGCCTGAACGCTCATTTCGTGGGTT
715 GATCCCCAGCTTGCGCACTATGCCTCTCCGATCACCTCAATGCCTGAACGCTCATTTCGTGGATT
** * * **
19954410 GTGTTAGGTATACAGAGTTCATTCCAAGTCTAAGATCGAATCGGACCGAGGGTTGTAGCAGTAGG
780 GACTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTACAGCAGTAGG
*
19954475 ATCGACAGCACGCAGGGGGGGACCGGGC
845 ATCGACAGCACGCAGGGGGGGACCAGGC
** * * * * * *
19954503 CGATCTTCGGCTTGTGCGTTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCTCATTTCATGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * *
19954568 TGGCTTAGGCGTACGGAGTTCATTCAATGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATTG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT-
* * *
19954633 GATCAGACCGAGGGTTGCGATAG-TAGGACCAGCAGTAGGATCGACAACACGTAAGGGGGGATC-
130 GATCAGACC---GGAT-CGAGAGTTACGA-CAGC---AGGATCGACAACACGT-AGGGGGGA-CA
* * * * * * *
19954696 GAGCTGATCCCCGACTTGCACATTCTGCCTCTCCGATCGATTGAGCGCCCGCACGCTCATTTCCT
185 GAGCTGATCCCCGACTTACACATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCCCATTTCAT
* * *
19954761 GGGTTAGCTTAGGCATACGG-AGTTCATTCTATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGT
250 GGGTTAGCTTAGGCATACGGCA-TTCATTCCATG-CTAAGCCCCAGCCAGAACAAGGGTTG-GGC
* * * *
19954825 AGCAGGACCGACAGCGGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCTCGACTTACGCAT
312 AGCAGGACCGACAACGAGATCGACAGCACGCAGAGGAGGATCGGGCTGATCCTCGACTTACGCAT
* * ** * *
19954890 TATGCCTCTCCGATCAGCCTCTCCTG-CCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGATT
377 TATGCCTCTCCGATCAGCCTCTCC-GACCGGCTGAGCACCCACACACTCATTTCATGGGTTGACT
**
19954954 TAGGCATACGGAGTTTGTCCCCAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGATCAAACTG
441 TAGGCATACGGAGTTTGTCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTG
** * * * * *
19955018 GACCGAGGGTTATGGCAGCAGGATCGGTAGCACGCAGGGGGGACTAGGCTGATCCTCAGCCCGCG
506 GACCGAGGGTTATGGCAGCAGGATCGACAACACGCAAGGGGGACCAGGCTGATCCCCAGCCCGAG
* * * *
19955083 CATTCTACCTCT-TCGGCCGACTGAGCGCCCGCATG-CCTTTTCGTGGGTTGGCTTAGGCATAGG
571 CATTCTACCTCTCT-GGCCGACTAAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG
* * * * * * **
19955146 GAGTTCATTCCATGTCTAAGTCCCAGCTGGATCGAA-GGTTGTGGCAGCGGGACCGACAGCACGT
635 GAGTTCATTCCATGTCTAAGCCCCAGC-CGAACCAAGGGTTGTGGCAACGAGACCGACAGCACAC
** * * ** *
19955210 AGAGGGGGACCGGGCCGATCCCCGGCTTGCGCACTATGCCTCTCCGGTCGGCTC-A-GCGCTCGT
699 AGAAAGGGACCGGGCCGATCCCCAGCTTGCGCACTATGCCTCTCCGATCACCTCAATGC-CT-GA
*
19955273 ACGCTCATTTTGATGGATTGACTTAGGCATAC-GAAGTTCATTCCCAA-TCTAAGATC-AGACCG
762 ACGCTCATTTCG-TGGATTGACTTAGGCATACAG-AGTTCATT-CCAAGTCTAAGATCGA-ACCG
* * * *
19955335 GTCTGAGGGTTACGGTAGTAGGATCGACAGCACGCA-GGGGGGACCAGGC
823 GACCGAGGGTTACAGCAGTAGGATCGACAGCACGCAGGGGGGGACCAGGC
* * *
19955384 CGATCCCCAGCTTGCGCATTCTGCTTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* *
19955449 TGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATT
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
19955513 TTGAGCCATG
Statistics
Matches: 840, Mismatches: 142, Indels: 43
0.82 0.14 0.04
Matches are distributed among these distances:
867 3 0.00
868 101 0.12
869 1 0.00
870 1 0.00
873 9 0.01
876 7 0.01
877 8 0.01
879 2 0.00
880 19 0.02
881 345 0.41
882 190 0.23
883 153 0.18
884 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (872 bp):
CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
ATCAGACCGGATCGAGAGTTACGACAGCAGGATCGACAACACGTAGGGGGGACAGAGCTGATCCC
CGACTTACACATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCCCATTTCATGGGTTAGCTTA
GGCATACGGCATTCATTCCATGCTAAGCCCCAGCCAGAACAAGGGTTGGGCAGCAGGACCGACAA
CGAGATCGACAGCACGCAGAGGAGGATCGGGCTGATCCTCGACTTACGCATTATGCCTCTCCGAT
CAGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTT
TGTCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTATGG
CAGCAGGATCGACAACACGCAAGGGGGACCAGGCTGATCCCCAGCCCGAGCATTCTACCTCTCTG
GCCGACTAAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCCCCAGCCGAACCAAGGGTTGTGGCAACGAGACCGACAGCACACAGAAAGGGACCGGGCCG
ATCCCCAGCTTGCGCACTATGCCTCTCCGATCACCTCAATGCCTGAACGCTCATTTCGTGGATTG
ACTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTACAGCAGTAGGA
TCGACAGCACGCAGGGGGGGACCAGGC
Found at i:19955486 original size:26 final size:26
Alignment explanation
Indices: 19955457--19955509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19955447 GTTGGCTTAG
**
19955457 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19955483 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19955509 G
1 G
19955510 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19956207 original size:26 final size:26
Alignment explanation
Indices: 19956177--19956229 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19956167 GTTGACTTAG
* *
19956177 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* *
19956203 GCATACGAAATTCATTCCCTGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
19956229 G
1 G
19956230 ATCGAACTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:19957411 original size:26 final size:26
Alignment explanation
Indices: 19957374--19957426 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19957364 GTTGACTTAT
19957374 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
19957400 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
19957426 G
1 G
19957427 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:19957413 original size:342 final size:341
Alignment explanation
Indices: 19956592--19957741 Score: 848
Period size: 342 Copynumber: 3.3 Consensus size: 341
19956582 GGGATCAGGT
* * * * * * * * *
19956592 CGATCCTCGGCTTACGCATTTTGCCTCTCCGG-CTAGCTGAGCGCCCGCATGCTCATTTTATGGG
1 CGATCCTCGGCTTACGCATTATACCTCTTCGGTCGA-CTCAACACCCGCACGCTCATTTCATGGG
* * * * **
19956656 TTGGCTTAGGCATAC-AGAGTTCAT-TCCATGTCTAAGGATATGGAGTTCATTCCCAGTCTAAGA
65 TTGACTTACGCATACGA-AGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* * *
19956719 TCA-GACCAGACCGAGGGTTGCGACAACAAGACCAGCAGCAGGATCGACAGCCCGCACAGGGGGA
128 T-AGGACCAGACCAAGGGTT--G----C--GA-CAGCA--A-GATCGACAG--CACTCAGGGGGA
* ** * ** * *
19956783 CCGAACCGATCCTC-GTCTTACGAATTCTGCCTCTCC-AGCTGGCTGAGCATCCGCACGCTCGTT
178 CCGAACCGATCCTCAG-CTTACAAATTCTAACTCTCCGA-CCGGCTGAGCGCCCGCACGCCCATT
** * * *
19956846 TCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGT
241 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA-GGAT-T
* * *
19956911 GCAGTAGGACTGATAGCGGGATCGACAGCACGCAGAAGGTGA-TCGGGC
304 --A-T-GG-C----AGCGGGACCGACAGCACACA-AAGGGGACT-GGGC
* * ** * * * ** ** * *** * * *
19956959 TGATCCCCGGCTTGTGCACTATGCCTCTCCGACCGGTTGAGTGCCCGCATGCACGTTTCATGGGT
1 CGATCCTCGGCTTACGCATTATACCTCTTCGGTCGACTCAACACCCGCACGCTCATTTCATGGGT
* * * * * * * *
19957024 GGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATATAGAGTTCATTTCCAGTCTTAGATCG
66 TGACTTACGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAG
* * * * * ** *
19957089 GACCGGATCGAGGGTTGCGACAGGAAGATCGGCAGCA-TGCAGGGGGGACCGGGCCGATCC-CTG
131 GACCAGACCAAGGGTTGCGACAGCAAGATCGACAGCACT-CA-GGGGGACCGAACCGATCCTC-A
*** ** * *
19957152 GCTTACGCGTTCTGCCTCTCCGACTGGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGG
193 GCTTACAAATTCTAACTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGG
* * * *
19957217 CATAGGG-GTTTATTCCATGTCTAAGCCCCAGTCAGACTGAGGATTGTGGCAGTGGGACCGACAG
258 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGATTATGGCAGCGGGACCGACAG
*
19957281 CACACAGAGGGGGA-TCGGGC
323 CACACA-AAGGGGACT-GGGC
* * * **
19957301 CGATCACT-GGCTTACGCATTATGCCTCTTCGGTCGACTCAACGCCCGCACGTTCATTTTGTGGG
1 CGATC-CTCGGCTTACGCATTATACCTCTTCGGTCGACTCAACACCCGCACGCTCATTTCATGGG
* *
19957365 TTGACTTATGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATA
65 TTGACTTACGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATA
* *
19957430 GGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACTTAGGGGGACCGAACCGATCCTCAGC
130 GGACCAGACCAAGGGTTGCGACAGCAAGATCGACAGCACTCAGGGGGACCGAACCGATCCTCAGC
* * * * * * * * * *
19957495 TTGCAAATTCTAACTTTCTGGCCGGTTGAGTGCCCGTACGGCCGTTTCATGGGTTGGCTTAGGGA
195 TTACAAATTCTAACTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCA
* * **
19957560 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGTAGCGGGACCGGTAGCA
260 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGATTATGGCAGCGGGACCGACAGCA
* *
19957625 CGCAAAGGGGACTGGGT
325 CACAAAGGGGACTGGGC
* * * * **
19957642 CGATCCTCTGCTTACGCATTATACCTCTTCGGTTGGCTCAGCACTTGCACGCTCATTTCATGGGT
1 CGATCCTCGGCTTACGCATTATACCTCTTCGGTCGACTCAACACCCGCACGCTCATTTCATGGGT
* *
19957707 TGACTTGCGCATACGAAGTTCATTCCCAGTCTAAG
66 TGACTTACGCATACGAAGTTCATCCCCAGTCTAAG
19957742 ATCAGACAAG
Statistics
Matches: 637, Mismatches: 131, Indels: 56
0.77 0.16 0.07
Matches are distributed among these distances:
340 2 0.00
341 163 0.26
342 217 0.34
343 2 0.00
346 1 0.00
347 2 0.00
348 1 0.00
351 1 0.00
352 3 0.00
353 33 0.05
354 76 0.12
355 10 0.02
356 1 0.00
358 4 0.01
359 2 0.00
361 1 0.00
365 1 0.00
367 113 0.18
368 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (341 bp):
CGATCCTCGGCTTACGCATTATACCTCTTCGGTCGACTCAACACCCGCACGCTCATTTCATGGGT
TGACTTACGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAG
GACCAGACCAAGGGTTGCGACAGCAAGATCGACAGCACTCAGGGGGACCGAACCGATCCTCAGCT
TACAAATTCTAACTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGATTATGGCAGCGGGACCGACAGCAC
ACAAAGGGGACTGGGC
Found at i:19957910 original size:26 final size:26
Alignment explanation
Indices: 19957873--19957925 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19957863 GTTGGCTTAG
*
19957873 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
19957899 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19957925 G
1 G
19957926 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19964540 original size:26 final size:26
Alignment explanation
Indices: 19964510--19964562 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19964500 GTTGAGTTAG
*
19964510 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
19964536 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19964562 G
1 G
19964563 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19965226 original size:169 final size:170
Alignment explanation
Indices: 19964904--19965260 Score: 409
Period size: 169 Copynumber: 2.1 Consensus size: 170
19964894 GGATTGCAGT
* * * *
19964904 AGCAGGATCAACAGCACGCAGGAAGGACCGGGCTGATCCCCGGCCTACGCATTCTGCCTCTTCGA
1 AGCAGGATCAGCAGCACGCAGGAAGGACCGGACCGATCCCCGGCCTACGCATTCTGCCTCTCCGA
* * * * * * *
19964969 TCGACTGAGCGCCCGCGCGCTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
66 TCAACCGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCCAATCT
* * *
19965034 AAGATCAGACCTGATCAAGGGTTGCAGCAGTAGGACCA-C
131 AAGACCAGACCGGACCAAGGGTTGCAGCAGTAGGACCAGC
** * * *
19965073 AGCAGGATCAGCAGCACGCAGGGGGGACCGGACCGATCCTCGGCTTGA-GCTTTCTGCCTCTCCG
1 AGCAGGATCAGCAGCACGCAGGAAGGACCGGACCGATCCCCGGCCT-ACGCATTCTGCCTCTCCG
*
19965137 ATCAACCGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCGTACGAAGTTCATT-CCATAT
65 ATCAACCGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCCA-AT
* * ** *
19965201 CTAA-ACCCTAG-TCGGACCGAGGGTTGTGGCAGTAGGACCAGT
129 CTAAGA-CC-AGACCGGACCAAGGGTTGCAGCAGTAGGACCAGC
*
19965243 AGCGGGATCAGCAGCACG
1 AGCAGGATCAGCAGCACG
19965261 TATAGGGGGA
Statistics
Matches: 157, Mismatches: 26, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
168 4 0.03
169 133 0.85
170 20 0.13
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (170 bp):
AGCAGGATCAGCAGCACGCAGGAAGGACCGGACCGATCCCCGGCCTACGCATTCTGCCTCTCCGA
TCAACCGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCCAATCT
AAGACCAGACCGGACCAAGGGTTGCAGCAGTAGGACCAGC
Found at i:19965399 original size:26 final size:26
Alignment explanation
Indices: 19965363--19965415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19965353 GTTGACTTAG
*
19965363 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
*
19965389 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
19965415 G
1 G
19965416 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:19965756 original size:26 final size:26
Alignment explanation
Indices: 19965706--19965758 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19965696 GTTGGCTTAG
* *
19965706 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
19965732 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
19965758 G
1 G
19965759 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Done.