Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 185 of 402
Found at i:19966449 original size:26 final size:26
Alignment explanation
Indices: 19966419--19966471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19966409 GTTGACTTAG
19966419 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
19966445 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
19966471 G
1 G
19966472 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:19967315 original size:26 final size:26
Alignment explanation
Indices: 19967286--19967338 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19967276 GTTGGCTTAG
19967286 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
19967312 GCATACGCAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
19967338 G
1 G
19967339 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:19968221 original size:158 final size:156
Alignment explanation
Indices: 19967709--19968198 Score: 475
Period size: 158 Copynumber: 3.1 Consensus size: 156
19967699 TAGGATCGAT
* * * ** * *
19967709 CCGGACTGAGGGTTGTAGTAGTAGGATCGATAGCACGCAGGGGGGACCGGGTCGAT-CCTCGGTT
1 CCGGACCGAGGGTTGTAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCT-GGCT
* * * * * * * * *
19967773 TATGCATTCTACCTCTCCCGCTGACTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCAT
65 TGTGCATTCTGCCTCTCCGGC-GGCTGAGCGCCAGCACG-TCATTTCATGGGTTGGCTTAGGCAT
* *
19967838 AGGGAGTTCATTCCATGTCTAAGCCCCTG
128 ACGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * **
19967867 CCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGGCGGACCGGGCCGA-CCCCAGCT
1 CCGGACCGAGGGTTGTAGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCT
* * * * * * *
19967931 TGCGTATTATGCCCCTCCGGCCGGCTTAGTGCCCAGACAC-TCATTTCATGGGTTGACTTAGGCA
65 TGTGCATTCTGCCTCTCCGG-CGGCTGAGCG-CCAG-CACGTCATTTCATGGGTTGGCTTAGGCA
** * *
19967995 TACGGAGTTCATTCC-TAGTCTAAGATCGAA
127 TACGGAGTTCATTCCAT-GTCTAAGCCCCAG
* ** * *
19968025 TCGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGCGCCAATCCCTGGCTT
1 CCGGACCGAGGGTTGTAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTT
*
19968090 GTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGTTCATTTCATGGGTTGGCTTAGGCATA
66 GTGCATTCTGCCTCTCCGG-CGGCTGAGCGCCAGCACG-TCATTTCATGGGTTGGCTTAGGCATA
* *
19968155 CAGAGTTTATTCCATGTCTAAGCCCCAG
129 CGGAGTTCATTCCATGTCTAAGCCCCAG
19968183 CCGGACCGAGGGTTGT
1 CCGGACCGAGGGTTGT
19968199 GGTAGTGGGA
Statistics
Matches: 258, Mismatches: 64, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
156 3 0.01
157 16 0.06
158 216 0.84
159 20 0.08
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
CCGGACCGAGGGTTGTAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTT
GTGCATTCTGCCTCTCCGGCGGCTGAGCGCCAGCACGTCATTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAG
Found at i:19969505 original size:159 final size:158
Alignment explanation
Indices: 19969290--19969698 Score: 396
Period size: 159 Copynumber: 2.6 Consensus size: 158
19969280 CCGATCCCAG
* * * * * * * *
19969290 CTTATGCATTCTGCCTCTCCAGCTGGTTGAGCGCCCGTACGCTCGTTTCCTAGGTTGGCTTAGGT
1 CTTACGCATTATGCCTCTCCAACTGCTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * ** *
19969355 ATAGGTAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGACCGGCAG
66 ATAAG-AGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGATGCGGCAGCAGGACCGACAG
* *
19969419 CACACAGAGGGGGATCGG-GCTAATCCCTGG
130 CACACAG-GGGGGATCGGATC-AATCCCTGA
* * * * * *
19969449 GTTACGCATTATGCCTCTCTAACCTGCTT-AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
1 CTTACGCATTATGCCTCTCCAA-CTGCTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
19969513 CATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGATGCGGCAGCAGGATCGAC
65 CATA-AGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCGAGGGATGCGGCAGCAGGACCGAC
** *
19969576 AGCACGTAGGGGGGATCGGATCGATCCCTGA
128 AGCACACAGGGGGGATCGGATCAATCCCTGA
** * * * *
19969607 CTTGTGCATTCTGCCTCTCCGACTGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTACGC
1 CTTACGCATTATGCCTCTCCAACTGCTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* *
19969672 ATACAAAGTGCATTCCATGTCTAAGCA
66 ATA-AGAGTTCATTCCATGTCTAAGCA
19969699 TACGGAGTTC
Statistics
Matches: 201, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 8 0.04
158 86 0.43
159 98 0.49
160 9 0.04
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
CTTACGCATTATGCCTCTCCAACTGCTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATAAGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGATGCGGCAGCAGGACCGACAGC
ACACAGGGGGGATCGGATCAATCCCTGA
Found at i:19969674 original size:158 final size:156
Alignment explanation
Indices: 19969249--19969698 Score: 444
Period size: 158 Copynumber: 2.9 Consensus size: 156
19969239 GGGTTACAAT
* * * *
19969249 AGCAAGATCGACAGCACGCA-GGGGGACCGGGCCGATCCCAGCTTATGCATTCTGCCTCTCCAGC
1 AGCAGGATCGACAGCACGCAGGGGGGATC-GGCCGATCCCTGCTTATGCATTCTGCCTCTCCACC
* * * * *
19969313 TGGTTGAGCGCCCGTACGCTCGTTTCCTAGGTTGGCTTAGGTATA-GGTAGTTCATTCCATGTCT
65 TGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCT
* * *
19969377 AAGCCCCAGTCGGACCGAGGGTTGTGGC
129 AAGCACCAGTCGGACCGAGGGATGCGGC
** * * * ** * * * *
19969405 AGTGGGACCGGCAGCACACAGAGGGGGATCGGGCTAATCCCTGGGTTACGCATTATGCCTCTCTA
1 AGCAGGATCGACAGCACGCAG-GGGGGATC-GGCCGATCCCT-GCTTATGCATTCTGCCTCTC-C
* * * * *
19969470 ACCTGCTT-AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-G
62 ACCTGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATG
*
19969533 TCTAAG-ATCAGATCGGACCGAGGGATGCGGC
126 TCTAAGCACCAG-TCGGACCGAGGGATGCGGC
* * *
19969564 AGCAGGATCGACAGCACGTAGGGGGGATCGGATCGATCCCTGACTTGTGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGCAGGGGGGATCGG-CCGATCCCTG-CTTATGCATTCTGCCTCTCC-A
* * *
19969629 -CTGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTACGCATACAAAGTGCATTCCATGTC
63 CCTGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
19969693 TAAGCA
128 TAAGCA
19969699 TACGGAGTTC
Statistics
Matches: 231, Mismatches: 50, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
156 14 0.06
157 11 0.05
158 99 0.43
159 97 0.42
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
AGCAGGATCGACAGCACGCAGGGGGGATCGGCCGATCCCTGCTTATGCATTCTGCCTCTCCACCT
GGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
GCACCAGTCGGACCGAGGGATGCGGC
Found at i:19970066 original size:26 final size:26
Alignment explanation
Indices: 19970037--19970089 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19970027 GGTTGACTAG
19970037 GCATACAGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
19970063 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19970089 G
1 G
19970090 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19970482 original size:159 final size:159
Alignment explanation
Indices: 19970063--19970566 Score: 515
Period size: 159 Copynumber: 3.2 Consensus size: 159
19970053 CCAAGTCTAA
* **
19970063 GCATACAGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACTGAGGGTTGCTGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTCA-ACCGGACTGAGGGTTGAGGCAGCAGGATCGAC
* * * *
19970127 AGCATACAGG-GGGG-CCGGGCCGTTCCTCGGCTTACGCATTCTGCCTCTCTGACCAGCTGAGCA
65 AGCATGCAGGAGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCAGCTGAGCA
*
19970190 CCCGCAC-TTCCATTTCGTGGGTTGGCTTAG
130 CCCGCACGCT-CATTTCGTGGGTTGGCTTAG
*** * * * ** * *
19970220 GCATA-GGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATTCAACCGGACTGAGGGTTGAGGCAGCAGGATCGAC
* * * * *
19970283 AGCATGCA-CAGAGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCT-TCGGCCAGCTCAA
65 AGCATGCAGGAG-GGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCT-GGCCAGCTGAG
* * * *
19970346 CACCCGCACGCTCGTTTCATGGGTTGACTTAT
128 CACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
19970378 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGTACTGAGGGTTAAGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTCAACCGGACTGAGGGTTGAGGCAGCAGGATCGACA
* * * * * *
19970443 GCACGCAGGAGGGGACCGAGCTGATCCCCGACTTGCGCATGCTGCCTCTCTGGCC-GACTGAGCG
66 GCATGCAGGAGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCAG-CTGAGC-
* *
19970507 A-CGGCATGCTCATTTCGTGGGTTGGCTTAG
129 ACCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
19970537 GCATACGGAGTTCATTCCTAGTCTAAGATT
1 GCATACGGAGTTCATTCCCAGTCTAAGATT
19970567 TTGAGTGACG
Statistics
Matches: 277, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
155 3 0.01
156 48 0.17
157 11 0.04
158 69 0.25
159 139 0.50
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTCAACCGGACTGAGGGTTGAGGCAGCAGGATCGACA
GCATGCAGGAGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCAGCTGAGCAC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:19971269 original size:26 final size:26
Alignment explanation
Indices: 19971233--19971284 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19971223 TTGACTTCGA
19971233 CATATAGAGTTCATCCCCAGTCTAAG
1 CATATAGAGTTCATCCCCAGTCTAAG
* *
19971259 CATATGGAGTTCATTCCCAGTCTAAG
1 CATATAGAGTTCATCCCCAGTCTAAG
19971285 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATATAGAGTTCATCCCCAGTCTAAG
Found at i:19972649 original size:26 final size:26
Alignment explanation
Indices: 19972607--19972659 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19972597 GTTGGCTTAG
19972607 GCATACAGAGATTATT-CCATGTCTAA
1 GCATACAGAGATTATTCCCA-GTCTAA
*
19972633 GCATACAGTG-TTCATTCCCAGTCTAA
1 GCATACAGAGATT-ATTCCCAGTCTAA
19972659 G
1 G
19972660 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 19 0.79
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGATTATTCCCAGTCTAA
Found at i:19973873 original size:26 final size:26
Alignment explanation
Indices: 19973843--19973895 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19973833 GATGACTTAG
*
19973843 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
19973869 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19973895 G
1 G
19973896 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19974347 original size:155 final size:154
Alignment explanation
Indices: 19973876--19974366 Score: 445
Period size: 159 Copynumber: 3.1 Consensus size: 154
19973866 TAAGCATATA
*
19973876 GAGTTCATTCC-CAGTCTAAGATCGAACCGGA-TCGAGGGTTGCGAAGTAGGATCGACAGTACGC
1 GAGTTCATTCCAC-GTCTAAGATCGAACCGGACT-GAGGGTTGCGAAGTAGGATCGACAGCACGC
* * * * * * * *
19973939 AAGGGGGATCGGGTAGATCCCCGGCTTGCACATTTTGCTGCTCCGGCCAGCTGAGCGCCCACACG
64 AGGGGGGACCGGGT-GATCCCCGGCTTGCGCATTATGC-CCTCCGGCCAGCTCAGTGCCCGCACG
* * * *
19974004 CCCGTTTCATGGGTTGGCTTAGGCATAGG
127 CTCATTTCGTGGGTT-GCTTAGGCATACG
* ** * * * * * ** * *
19974033 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACTAAGGGTTGTGGTAGCGGGA-CTGGCAGCACGT
1 GAGTTCATTCCACGTCTAAGATCGAACCGGACTGAGGGTTG-CGAAGTAGGATC-GACAGCACGC
** * *
19974097 AGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGCTAGCTCAGTGCCCGCAC
64 AG-GGGGGACCGGG-TGATCCCCGGCTTGCGCATTATGCC-CTCCGGCCAGCTCAGTGCCCGCAC
*
19974162 GTTCATTTCGTGGGTTGACTTATGG-ATACG
126 GCTCATTTCGTGGGTTG-CTTA-GGCATACG
* * * * *
19974192 GAGTTCTTTCCTA-GTCTAAGATCGGACTGGACTGAGGGTTGCGCAGTAGGATCGACAGCACCCA
1 GAGTTCATTCC-ACGTCTAAGATCGAACCGGACTGAGGGTTGCGAAGTAGGATCGACAGCACGCA
* * * * *
19974256 GGGGGGACCAGGGTGATCCCCGGCTTGCGCATTCTGCCCTCCGGCCAG-TTAATGCCCGGATGCT
65 GGGGGGACC-GGGTGATCCCCGGCTTGCGCATTATGCCCTCCGGCCAGCTCAGTGCCCGCACGCT
19974320 CATTTCGTGGGTTAGCTTAGGCATACG
129 CATTTCGTGGGTT-GCTTAGGCATACG
19974347 GAGTTCATTCCACGTCTAAG
1 GAGTTCATTCCACGTCTAAG
19974367 CATACGGAGT
Statistics
Matches: 263, Mismatches: 56, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
154 3 0.01
155 50 0.19
156 9 0.03
157 63 0.24
158 34 0.13
159 101 0.38
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (154 bp):
GAGTTCATTCCACGTCTAAGATCGAACCGGACTGAGGGTTGCGAAGTAGGATCGACAGCACGCAG
GGGGGACCGGGTGATCCCCGGCTTGCGCATTATGCCCTCCGGCCAGCTCAGTGCCCGCACGCTCA
TTTCGTGGGTTGCTTAGGCATACG
Found at i:19974376 original size:26 final size:26
Alignment explanation
Indices: 19974340--19974392 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19974330 GTTAGCTTAG
19974340 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19974366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19974392 G
1 G
19974393 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19974538 original size:184 final size:180
Alignment explanation
Indices: 19974187--19974599 Score: 521
Period size: 184 Copynumber: 2.3 Consensus size: 180
19974177 TGACTTATGG
* * *
19974187 ATACGGAGTTCTTTCCTAGTCTAAGATCGGA-CTGGACTGAGGGTTGCGCAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGA-TGAGGGTTGCGCAGTAGGATCGACAGC
* * * * * *
19974251 ACCCAGGGGGGACCAGGGTGATCCCCGGCTTGCGCATTCTGCCCTCCGGCCAGTTAATGCCCGGA
64 ACCCAGGGGGGACCAGAGTGATCCCCAGCTTACACATTCTGCCCTCCGACCAGCTAATGCCCGGA
19974316 TGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
129 TGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
* *
19974368 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATGGAGGGTTGCGACAGTAGGATTGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAT-GAGGGTTGCG-CAGTAGGATCGACAGC
*** *
19974433 ATGTAGGGGGGACC-GAGTCGATCCTCAGCTTACACATTCTGCCTCTCCGACC-GACTAA-GCGC
64 ACCCAGGGGGGACCAGAGT-GATCCCCAGCTTACACATTCTGCC-CTCCGACCAG-CTAATGC-C
* * *
19974495 CTGCG-TGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
125 C-G-GATGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
*
19974552 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGATTGCG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAT-GAGGGTTGCG
19974600 GTAGTAGGTC
Statistics
Matches: 203, Mismatches: 20, Indels: 15
0.85 0.08 0.06
Matches are distributed among these distances:
180 1 0.00
181 44 0.22
182 49 0.24
183 12 0.06
184 96 0.47
185 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (180 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATGAGGGTTGCGCAGTAGGATCGACAGCAC
CCAGGGGGGACCAGAGTGATCCCCAGCTTACACATTCTGCCCTCCGACCAGCTAATGCCCGGATG
CTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
Found at i:19974560 original size:26 final size:26
Alignment explanation
Indices: 19974524--19974576 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19974514 GTTGGCTTAG
19974524 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
19974550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19974576 G
1 G
19974577 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19974939 original size:26 final size:26
Alignment explanation
Indices: 19974903--19974955 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19974893 GTTGACTTAG
19974903 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
19974929 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
19974955 G
1 G
19974956 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:19975323 original size:158 final size:157
Alignment explanation
Indices: 19974929--19975429 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 157
19974919 CCCAGTCTAA
* * * **
19974929 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACA
* * * **
19974994 GCACGA-AGGGGGG-TCTGGGTCGATCACCAGCTTGCGCATTCTACCTCCCCGGTCGGCTGAGTG
66 GCAC-ACAGGGGGGATC-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
*
19975057 CCCGAACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGAACGCTCGTTTCGTGGGTT-GCTTAG
* ** ** * *
19975087 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGCTGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGA
* ** * * * * * ** * *
19975150 CAACATGCTGAGGGGATCGGGTCGATCCCCAGCTTGCACATTATGCCTTTCCGACCGGTTCAGCA
64 CAGCACACAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
*
19975215 CCCGAACGCTCGTTTCGTGGGTTGACATAG
129 CCCGAACGCTCGTTTCGTGGGTTG-CTTAG
* * * *
19975245 GCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGACTGAGGGTTACAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACA
* * * * *
19975310 GCACACAGGGGGGATCGGG-CCAGTCCGCGGTTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCAC
66 GCACACAGGGGGGATCGGGTCGA-TCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCAC
*
19975374 CC-ACATGCTCGTTTCGTGGGTTTGCTTAG
130 CCGA-ACGCTCGTTTCGTGGG-TTGCTTAG
*
19975403 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
19975430 TATACGGAGT
Statistics
Matches: 270, Mismatches: 62, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 11 0.04
158 249 0.92
159 10 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACA
GCACACAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACC
CGAACGCTCGTTTCGTGGGTTGCTTAG
Found at i:19975441 original size:26 final size:25
Alignment explanation
Indices: 19975405--19975454 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
19975395 TTGCTTAGGC
19975405 ATACGAAGTTCATTCCATGTCTAAGT
1 ATACGAAGTTCATTCCA-GTCTAAGT
* *
19975431 ATACGGAGTTCATTCTAGTCTAAG
1 ATACGAAGTTCATTCCAGTCTAAG
19975455 ATTGGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (25 bp):
ATACGAAGTTCATTCCAGTCTAAGT
Found at i:19975990 original size:26 final size:26
Alignment explanation
Indices: 19975954--19976006 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19975944 GTTGGCTTAG
*
19975954 GCATATGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
19975980 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19976006 G
1 G
19976007 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:19976259 original size:539 final size:543
Alignment explanation
Indices: 19975345--19976369 Score: 1290
Period size: 539 Copynumber: 1.9 Consensus size: 543
19975335 CGCGGTTTGC
* * * *
19975345 GCATTCTGCCTCTCCGGTTGGCTGAGCACCCACATGCTCGTTTCGTGGGTTTGCTTAGGCATACG
1 GCATTCTGCCTCTCCAGTCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * * *
19975410 AAGTTCATTCCATGTCTAAGTATACGGAGTTCATTCTAGTCTAAGATTGGACTGGACCGAGGGTT
66 AAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATTGGACCGGACCAAGGGTT
* * ** * * *
19975475 GCGACAGTAGGATTAGCAGTAGGATCAGCAGCACGCAGGGGTGGATCGAGCGGATCCCCAGCTTG
131 ACGACAGCAGGACCAGCAGTAGGATCAGCAGCACGCAGGGGTAGACCGAGCCGATCCCCAGCTTG
**
19975540 CGCATTTTGCCTCTCGATCGGCCTCTCCGGTCGGTTGACCACCCGCACACTCGTTTCATGGGTTG
196 CGCA--TT--CTCTC-A---GCCTCTCCGACCGGTTGACCACCCGCACACTCGTTTCATGGGTTG
* *
19975605 ACTTAGGCATACGGAGTTCATCCCCAGTTAAAGCATATAGAGTTCATTCCCAATCTATGATCAGA
253 ACTTAGGCAGACGGAGTTCATCCCCAGTTAAAGCATATAGAGTTCATTCCCAATCTAAGATCAGA
* * * * * * *
19975670 TCGAACCGAGGGTTGCGACAGCAGGATCGATAGTATGTAGGGGGGACCGGGCCGATCCCTGGCTT
318 CCGAACCAAGGGTTGCGACAACAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGACTT
* *
19975735 GTGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
383 GTGCATTCTGCCTCTCCGATCAGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGACATA
* *
19975800 GGGAGTTCTTTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGTGGGACAAGCAGCATG
448 GGGAGTTCATTCCATGTCTAAGCCATAGCCAGACCGAGGGTTGTGGCAGTGGGACAAGCAGCATG
19975865 CAGAGGCGGACCGGATCGATCCCCAGCTTAT
513 CAGAGGCGGACCGGATCGATCCCCAGCTTAT
* * *
19975896 GCATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCTCGTTTCGTGTGTTGGCTTAGGCATATG
1 GCATTCTGCCTCTCCAGTCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
19975961 GAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGT
66 AAGTTCACTCCATGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATTGGACCGGACCAAGGGT
* * * * * * * **
19976026 TATGGCAGCAGGACCAGCGGTAGGATCGGTAGCACGTAGGGG-AGACCGGGCCGATCCTTAGCTT
130 TACGACAGCAGGACCAGCAGTAGGATCAGCAGCACGCAGGGGTAGACCGAGCCGATCCCCAGCTT
* * * * **
19976090 GCGCA-T-TCT-A-CCTCTCCGACCTGTTGAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGG
195 GCGCATTCTCTCAGCCTCTCCGACCGGTTGACCACCCGCACACTCGTTTCATGGGTTGACTTAGG
* ** * * * *
19976151 CAGATGGAGTTCATCCTTAGTCT-AAGCATATGGATTTCATTCCCAGTCTAAGATCAGACCGGAC
260 CAGACGGAGTTCATCCCCAGT-TAAAGCATATAGAGTTCATTCCCAATCTAAGATCAGACCGAAC
* *
19976215 CAAGGGTTGC-AGCAACGGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCTTGACTTGTGCA
324 CAAGGGTTGCGA-CAACAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGACTTGTGCA
* * * * ** * * *
19976279 TTCTGCCTTTCTGGTCAGCTGAGCTCCCGCGTGCTCGTTTCGTGGGTTGGCTTAGACATAGGTAG
388 TTCTGCCTCTCCGATCAGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGACATAGGGAG
19976344 TTCATTCCATGTCTAAGCCATAGCCA
453 TTCATTCCATGTCTAAGCCATAGCCA
19976370 ACAGCGGGAT
Statistics
Matches: 403, Mismatches: 68, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
538 1 0.00
539 227 0.56
540 1 0.00
543 1 0.00
545 3 0.01
548 1 0.00
551 111 0.28
552 58 0.14
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (543 bp):
GCATTCTGCCTCTCCAGTCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
AAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATTGGACCGGACCAAGGGTT
ACGACAGCAGGACCAGCAGTAGGATCAGCAGCACGCAGGGGTAGACCGAGCCGATCCCCAGCTTG
CGCATTCTCTCAGCCTCTCCGACCGGTTGACCACCCGCACACTCGTTTCATGGGTTGACTTAGGC
AGACGGAGTTCATCCCCAGTTAAAGCATATAGAGTTCATTCCCAATCTAAGATCAGACCGAACCA
AGGGTTGCGACAACAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGACTTGTGCATTC
TGCCTCTCCGATCAGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGACATAGGGAGTTC
ATTCCATGTCTAAGCCATAGCCAGACCGAGGGTTGTGGCAGTGGGACAAGCAGCATGCAGAGGCG
GACCGGATCGATCCCCAGCTTAT
Found at i:19977229 original size:26 final size:26
Alignment explanation
Indices: 19977200--19977252 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19977190 GTTGACTATG
*
19977200 GCATATAGAGTT-CATCCCTAGTCTAA
1 GCATACAGAGTTCCATCCC-AGTCTAA
* *
19977226 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCCATCCCAGTCTAA
19977252 G
1 G
19977253 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCCATCCCAGTCTAA
Found at i:19977537 original size:159 final size:157
Alignment explanation
Indices: 19977277--19977926 Score: 524
Period size: 159 Copynumber: 4.1 Consensus size: 157
19977267 AGAGTTACGA
* * * * * * *
19977277 CAGCAAGATCGACAGTACGCAG-GGGGGATCGAGCCGATCCCC-AGCTTTCGCATTTTGCCTCTT
1 CAGCAGGATCGACAGCACGTAGAGGGGGACCG-GCCGATCCCCGA-CTTGCGCATTCTGCCTCTC
* *
19977340 CGACCGGCTGAGCGCCCGCACGC-CCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCAT
64 CGACCGACTGAGCGCCCGCACACTCC-TTTCATGGGTTGGCTTAGGCATAG-GAGTTCATTCCAT
*
19977404 GTTTAAGCCCCAGCCAGATCGAGGGTTGTGG
127 GTCTAAGCCCCAGCCAGATCGAGGGTTGTGG
* * * * * *
19977435 CAGCGGGACCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCCTTCTGCCTTTCC
1 CAGCAGGATCGACAGCACGTAGAGGGGGA-CCGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
* * *
19977500 GACCAACTGAGCGCCCGCACACTCCTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGT
65 GACCGACTGAGCGCCCGCACACTCCTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGT
*
19977565 CTAAGCCCTAGCCAG-TCCGAGGGTTGTGG
129 CTAAGCCCCAGCCAGAT-CGAGGGTTGTGG
** ** * ** * *
19977594 CAGTGGGATCGGTAGCACGCAGATAGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCC
1 CAGCAGGATCGACAGCACGTAGAGGGGGA-CCGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
** * * * * ** * *
19977659 GATTGGA-TCAGTGCCCGCACGCTCGTTTCATGGGTTGATTTAGGCATATTGAGTTCATT-CTTA
65 GA-CCGACTGAGCGCCCGCACACTCCTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCAT-
** * **
19977722 GTCTAAG-ATCAGACCAGACCGAGGGTTGCAG
127 GTCTAAGCCCCAG-CCAGATCGAGGGTTGTGG
* * * * * * * * **
19977753 TAGTAGGATTGACAGCATGTAG-GGAGGACCGGGCTGATCCTCGACTTACGCATTCTGCCTCTAT
1 CAGCAGGATCGACAGCACGTAGAGGGGGACC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
** ** * * ** *
19977817 GGTCGGTTGAGCACCCACACACTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
65 GACCGACTGAGCGCCCGCACACTCCTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGT
* * *
19977882 CTAAGCCCCAACCGGATTGAGGGTTGTGG
129 CTAAGCCCCAGCCAGATCGAGGGTTGTGG
19977911 CAGCAGGATCGACAGC
1 CAGCAGGATCGACAGC
19977927 GGGATCGACA
Statistics
Matches: 381, Mismatches: 97, Indels: 28
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 127 0.33
159 245 0.64
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
CAGCAGGATCGACAGCACGTAGAGGGGGACCGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG
ACCGACTGAGCGCCCGCACACTCCTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCT
AAGCCCCAGCCAGATCGAGGGTTGTGG
Found at i:19979294 original size:26 final size:26
Alignment explanation
Indices: 19979265--19979317 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19979255 GTTGACTTAG
*
19979265 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
19979291 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
19979317 G
1 G
19979318 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:19979661 original size:159 final size:157
Alignment explanation
Indices: 19979291--19979795 Score: 521
Period size: 159 Copynumber: 3.2 Consensus size: 157
19979281 CCTAGTCTAA
* * * *
19979291 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCATGATCAGCA
1 GCATACGGAGTTCATTCCAA-TCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAAGATCGGTA
* * * * *
19979356 GCATGCA-AGGGGGATCGTGCCAATCTCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCAC
65 GCACGCAGAGGGGGATCGGGCCGATC-CCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGC
* * *
19979420 CCGCACGCCCATTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** * * * *
19979449 GCATAGGGAGTTCATTCCATGTTTAAG-CCCCATCTGGACCGAGGGTTGTGGCAGCAGGACCGGT
1 GCATACGGAGTTCATTCCA-ATCTAAGATCAGATC-GGACTGAGGGTTGCGGCAGCAAGATCGGT
* ** * * * * *
19979513 AGCACGCAGAGAGGGATCGGGCCGATCCCTGACTTGTACATTATGCCTCTTCGGTCGGCTCAGCG
64 AGCACGCAGAGGGGGATCGGGCCGATCCC-GACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
* * *
19979578 CCCGCACGCTTGTTTCGTGGGTTGACTTAT
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
19979608 GCATACGGAGTTCATTCCCAATCGAAGATCAGATCGAACTGAGGGTTGCGGCAGTAAGATCGATA
1 GCATACGGAGTTCATT-CCAATCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAAGATCGGTA
* * *
19979673 GCACGCATG-GGGGGATCGGGCTGATACCCGATTTGCGCATTCTGCCTCTCCGACCGACTGAGCG
65 GCACGCA-GAGGGGGATCGGGCCGAT-CCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
*
19979737 TCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
19979767 GCATACGGAGTTCTTTCCCAGTCTAAGAT
1 GCATACGGAGTTCATT-CCAATCTAAGAT
19979796 TTTGAGCCAC
Statistics
Matches: 275, Mismatches: 64, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
157 4 0.01
158 54 0.20
159 206 0.75
160 11 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAATCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAAGATCGGTAG
CACGCAGAGGGGGATCGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19980500 original size:26 final size:26
Alignment explanation
Indices: 19980464--19980516 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19980454 GTTGACTTAG
*
19980464 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
19980490 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
19980516 G
1 G
19980517 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:19981019 original size:26 final size:26
Alignment explanation
Indices: 19980968--19981020 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19980958 GTTGGCTTAG
*
19980968 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
19980994 GCATGCGGAGTTCATTCC-TAGCCTAA
1 GCATACGGAGTTCATTCCAT-GCCTAA
19981020 G
1 G
19981021 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:19981853 original size:356 final size:356
Alignment explanation
Indices: 19981445--19982113 Score: 871
Period size: 356 Copynumber: 1.9 Consensus size: 356
19981435 GCGCATTATG
* * * *
19981445 CCTCTCCTGTCGGTTGAGTGCCTGCACGCTCGTTTCGTGGGTTGAATTAGGCATATGAAGTTCAT
1 CCTCTCCTGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGAAGTTCAT
* * * * * *
19981510 CCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCA-
66 CCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTAC-GAAT
* * ** ** * *
19981574 GCAGGATCGACATTACGCAGGGGGGACCGAGCCAATCC-CTGGCTTGCGCATTCTGCCTCTCCGA
130 ACAAGATCGACAGCACGCACAGGGGACCGAGCCAATCCTC-GACTTACGCATTCTGCCTCTCCGA
** * ** *
19981638 TCGACTGAGCGCCCGTACACTTGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCG
194 TCGACTGAGAACCCGCACACCCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCAATGTCG
* *
19981703 AAGCCCCAGCC-AGACCGAGGGTTGTGGTAGCAGGA-TCGACAGCACGCAGAGGGGGGCTGGGCT
259 AAGCCCCAACCGA-ACCGAGGGTTGTGGCAGCAGGACT-GACAGCACGCAGAGGGGGGCTGGGCT
19981766 AATCCTCGACTTACGCATTATGCCTCTTCGACTGA
322 AATCCTCGACTTACGCATTATGCCTCTTCGACTGA
* *
19981801 CCTCTCC-GATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 CCTCTCCTG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGAAGTTCA
*
19981865 TCCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGAAT
65 TCCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGAAT
* * * * * *
19981930 ACAAGATCGACAGCACGCTCAGGGGACCGGGCCGATCCTCGACTTATGCATTCTGCCTCTTCGGT
130 ACAAGATCGACAGCACGCACAGGGGACCGAGCCAATCCTCGACTTACGCATTCTGCCTCTCCGAT
* * * * * *
19981995 TGGCTGAGAACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTA
195 CGACTGAGAACCCGCACACCCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCAATGTCGA
* *
19982060 AGCCCCAACCGAACTGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGG
260 AGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACTGACAGCACGCAGAGGGGG
19982114 ATCAGACCGA
Statistics
Matches: 265, Mismatches: 43, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
355 3 0.01
356 259 0.98
357 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (356 bp):
CCTCTCCTGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGAAGTTCAT
CCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGAATA
CAAGATCGACAGCACGCACAGGGGACCGAGCCAATCCTCGACTTACGCATTCTGCCTCTCCGATC
GACTGAGAACCCGCACACCCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCAATGTCGAA
GCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACTGACAGCACGCAGAGGGGGGCTGGGCTAATC
CTCGACTTACGCATTATGCCTCTTCGACTGA
Found at i:19982357 original size:158 final size:157
Alignment explanation
Indices: 19981877--19982378 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 157
19981867 CCCAGTCCAA
* * ** * * *
19981877 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTT-ACGAATACAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGAT-AGAACAGACCGAGGGTTGTGGCA-GCAGGATCGA
* * *
19981940 CAGCACGCTCA-GGGGACCGGGCCGATCCTCGACTTATGCATTCTGCCTCTTCGGTTGGCTGAGA
63 CAGCACGC-AAGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCGGTTGGCTGAGA
* * *
19982004 ACCCGCACACCCGTTTCGTGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **** * * *
19982035 GCATAGGGAGTTCATTCAATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGCGGGA-CTGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATAGAACAG-ACCGAGGGTTGTGGCAGCAGGATC-GAC
* * * * * ** * *
19982099 AGCACGCAGAGGGGGATCAGACCGATCCTCGACTTTCGTATTATGCCTCTTCGGCCGGTTCA-AT
64 AGCACGCA-AGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCGGTTGGCTGAGA-
* * * * * *
19982163 GCCCGTATGCTCATTTCATGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **
19982194 ACATACAGAGTTCATTCCCA-GTCTAAGATAGGATTAGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATA-GAACAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
19982258 AGCATGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGTCTCTTCGGTTGGCTGAGCGC
64 AGCACGCAAGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCGGTTGGCTGAGAGC
*
19982323 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
19982352 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
19982379 CATACAGAAT
Statistics
Matches: 259, Mismatches: 73, Indels: 24
0.73 0.21 0.07
Matches are distributed among these distances:
157 9 0.03
158 131 0.51
159 114 0.44
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGAACAGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAAGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCGGTTGGCTGAGAGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19982391 original size:26 final size:26
Alignment explanation
Indices: 19982352--19982404 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19982342 GTTGGCTTAG
* *
19982352 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAATTCATTTCCA-GTCTAA
19982378 GCATACAGAATTCATTTCCAGTCTAA
1 GCATACAGAATTCATTTCCAGTCTAA
19982404 G
1 G
19982405 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTTCCAGTCTAA
Found at i:19983106 original size:26 final size:26
Alignment explanation
Indices: 19983076--19983128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19983066 GTTGACTTAG
*
19983076 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
19983102 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
19983128 G
1 G
19983129 AGCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:19983628 original size:26 final size:26
Alignment explanation
Indices: 19983578--19983630 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19983568 GTTGGCCTAG
* *
19983578 GCATATGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
19983604 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
19983630 G
1 G
19983631 ATTGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:19983788 original size:183 final size:185
Alignment explanation
Indices: 19983427--19983788 Score: 505
Period size: 183 Copynumber: 2.0 Consensus size: 185
19983417 AGGCATACAA
19983427 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
* * * * * *
19983492 GAGGGGATCGGGTCAGTCCCCGACTTACGCATTCTGCCTCTCCGGCCGGTTGAGCGCCTGCACGT
66 GAGGGGATCAGGCCAGTCCCCGACTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGC
* * *
19983557 TCGTTTCATGGGTTGGCCTAGGCATATGGAGTTCATTCCATTTCTAAGCATACGG
131 TCGTTTCATGGGTTGGCCTAGGCATACGGAGATCATTCCATGTCTAAGCATACGG
** **
19983612 AGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCA-
1 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
* * * * * * *
19983676 G-GGGGATCAGGCC-GATCCTCGGCTTGCATATTTTGCCTCTCCGGCTGGCTGAGCGCCCGCATG
66 GAGGGGATCAGGCCAG-TCCCCGACTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACG
*
19983739 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGC
130 CTCGTTTCATGGGTTGGCCTAGGCATACGGAGATCATTCCATGTCTAAGC
19983789 CCCAACCGAA
Statistics
Matches: 155, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
182 1 0.01
183 93 0.60
184 1 0.01
185 60 0.39
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
GAGGGGATCAGGCCAGTCCCCGACTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCCTAGGCATACGGAGATCATTCCATGTCTAAGCATACGG
Found at i:19983958 original size:26 final size:26
Alignment explanation
Indices: 19983929--19983984 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19983919 TGGGTTGACT
*
19983929 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
*
19983955 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
19983981 TAAG
1 TAAG
19983985 ATCGAACCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:19984211 original size:355 final size:361
Alignment explanation
Indices: 19983551--19984521 Score: 1054
Period size: 368 Copynumber: 2.7 Consensus size: 361
19983541 TTGAGCGCCT
* * * * * *
19983551 GCACGTTCGTTTCATGGGTTGGCCTAGGCATATGGAGTTCAT-TCCATTTCTAAGCATACGGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATACGGAGT
* * * *
19983615 TCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCA-GGG
65 TCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGC-GTAGCAGGATCGGCAGCACGCAGGGG
* * ** * * * * ** *
19983679 GGATCAGGCCGAT-CCTCGGCTTGCATATTTTGCCTCTCCGGCTGGCTGAGCGCCCGCATGCTCG
129 GGATCGGGCCGATCCCT-GACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACACCCG
* * * * ** *
19983743 TTTCATGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCCCCAACCGAACTGAGGGTT
193 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCAACGGTT
* * *
19983808 GTGGCAGCAGGATCGGCAGCGGGATCGGCAACACGCAGAGGAGGATCGGGCTGATCGTCGACTTG
258 GTGGCAGCAGGATCGACAGCGGGATCGGCAACACGCAGAGGAGGATCGGGCTGATCCTCGACTTA
* *
19983873 TGCATTATG-C-CT-C-T-T-T-GGTCGACTGAGCGCTC
323 CGCATTATGCCTCTCCGTCTCTCGGTCGACTGAGCGATC
* * * *
19983905 GTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * * *
19983970 CATTCCCAGTCTAAGATCGAACCGAAGCGAGGGTTGCAGCAGCGGGATCGACAGCATGCAGGGGG
66 CATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGC-GTAGCAGGATCGGCAGCACGCAGGGGG
* * ** * *
19984035 GATCGGGCCAATCCCTGACTTGCGCATTCTGCCTTTTTGACCAGG-TGAGCACCTGCACACCCAT
130 GATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACC-GGCTGAGCACCCGCACACCCGT
*
19984099 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAACGGTTG
194 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCAACGGTTG
* * * *
19984164 TGGTAGCAGGA-CTGACAGTGGGATCGGCAGCACGCAGA-GAGGGATCGGGTTGATCCTCGACTT
259 TGGCAGCAGGATC-GACAGCGGGATCGGCAACACGCAGAGGA-GGATCGGGCTGATCCTCGACTT
*
19984227 ACGCATTATGCCTCTCCGGTCGGCCTCTCCGGTCGACTGAGTGATC
322 ACGCATTATGCCTCTCC-GT----CTCT-CGGTCGACTGAGCGATC
* *
19984273 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCCAAGCATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * * * *
19984338 CATTCCTAGTCTAAGATC-AGACCGGACCGAAGGTTGCGATAGTAAGATCGGCAGCACGCAGGAG
66 CATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGCG-TAGCAGGATCGGCAGCACGCAGGGG
* * * * * *
19984402 GGACCGAGTCGATCCCCGACTTGCGCATTCTGCCTGTCCGATCGGCTGAGCACCCGCACGA-CCG
129 GGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCAC-ACCCG
* * *
19984466 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAACCCCAACTGGA
193 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGA
19984522 TTGAGGGTTG
Statistics
Matches: 507, Mismatches: 87, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
354 104 0.21
355 164 0.32
356 6 0.01
357 2 0.00
358 1 0.00
360 1 0.00
365 1 0.00
366 1 0.00
367 4 0.01
368 222 0.44
369 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (361 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGTAGCAGGATCGGCAGCACGCAGGGGGG
ATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACACCCGTTT
CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCAACGGTTGTG
GCAGCAGGATCGACAGCGGGATCGGCAACACGCAGAGGAGGATCGGGCTGATCCTCGACTTACGC
ATTATGCCTCTCCGTCTCTCGGTCGACTGAGCGATC
Found at i:19984254 original size:13 final size:13
Alignment explanation
Indices: 19984236--19984261 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19984226 TACGCATTAT
19984236 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
19984249 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
19984262 ACTGAGTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.46, G:0.31, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:19984642 original size:159 final size:159
Alignment explanation
Indices: 19984326--19984828 Score: 407
Period size: 159 Copynumber: 3.2 Consensus size: 159
19984316 CCCAGTCCAA
* * * * * * * ** * * *
19984326 GCATATGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAAGGTTGCGATAGTAAGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACTGAATCGAGGGTTACGGCAGTAGGACCGAC
* * * * * * *
19984390 AGCACGCAGGA-GGGA-CCGAGTCGATCCCC-GACTTGCGCATTCTGCCTGTCCGATCGGCTGAG
65 AGCACACAGGAGGGGATCGGA-TCGATCCCCAG-CTTACGCATTATGCCTCTCCGACCGGCTCAG
* *
19984452 CACCCGCACGAC-CGTTTCGTGGGTTGGCTTAG
128 CGCCCGCACG-CTCATTTCGTGGGTTGGCTTAG
* * * * **
19984484 GCATAGGGAGTTCATTCCATGTTTAA-ACCCCA-ACTGGATTGAGGGTTGGGGCA--ACGAGACC
1 GCATACGGAGTTCATTCCATGTCTAAGA--CCAGACTGAATCGAGGGTTACGGCAGTA-G-GACC
* ** *
19984545 GACAGCACACA-GAGGGGGATCGGATCGATCCCCAGTTTGTGCATTATGCCTCTCCGACCGGTTC
62 GACAGCACACAGGA-GGGGATCGGATCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGCTC
* * *
19984609 AGCGCCCGTACGCTCATTTCATGGGTTGACTTAG
126 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
** *
19984643 GCATACGGAGTTCATTCCCA-GTCTAAGATTAGACTGAATCGAGGGTTACGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACTGAATCGAGGGTTACGGCAGTAGGACCGAC
** * * * * *
19984707 AGCACGTAGGAGGGGATCGGGTTGGTCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
65 AGCACACAGGAGGGGATCGGATCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGCTCAGCG
* *
19984772 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
19984802 GCATATGGAGTTCATTCCATTTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
19984829 CATACAGAGT
Statistics
Matches: 274, Mismatches: 54, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 53 0.19
159 205 0.75
160 11 0.04
161 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACTGAATCGAGGGTTACGGCAGTAGGACCGACA
GCACACAGGAGGGGATCGGATCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:19987953 original size:26 final size:26
Alignment explanation
Indices: 19987917--19987969 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19987907 GTTGACTTAG
19987917 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
19987943 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19987969 G
1 G
19987970 ATTGAACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19988568 original size:342 final size:343
Alignment explanation
Indices: 19987467--19988628 Score: 945
Period size: 342 Copynumber: 3.3 Consensus size: 343
19987457 ATCGGGTCGG
* * * * * * *
19987467 TCCCCGGCTTGCGCATTCTGCATCTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
1 TCCCCGGCTTGCGCATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * * * *
19987532 CTTAGGTACACAGAGTTCAT-TCCATGTTTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGA
66 CTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAG-AGTTCATTCCCAGTCAAAGATCGA
*** * * * * * * *
19987595 ACCGGACTGAGGGTTGCGACAGTAGGACCAGCAGCAGGATTGACAGCATGCAGGGGGGATCGAGT
129 ACTAAACCGAGGGTT---AC-----G---A-CAGCAGGATCGACAGCACGCAGGGCGAACCGAAT
*** * * * * ** *
19987660 CGATCCCCGGGTTGCGCATTCTGCCACTCC-GACTAGCTGAGCGCCCACATGCTC-GTTTCATGG
182 CGATCCCCAACTTGCGCATTCTGCCTCTCCAGGC-GGCTGAACGCCTGCACGC-CAGTTTCATGG
** ** * *
19987723 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGAGCCAGCTGGACCGATGGTTGTGGCAGC
245 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGC
* * * * *
19987788 AAGACTGGCAGCGGGATTGGCAGCATGCAGAGGGGGATCGGGCTGA
310 CAGA----C--C--GA----CAGCACGCAGAGGGGGACCAGGCTAA
* * * * *
19987834 TCTCCGACTTGCGCATTATGCCTCTCCGATTGGCCTCTCCGGTTGGCTGAGCACCCGCACGCTCG
1 TCCCCGGCTTGCGCATTATGCCTCTTC-A---G-----CC----GGCTCAGCGCCCGCACGCTCG
* *
19987899 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAG
53 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * ** * *
19987964 TCTAAGATTGAACTAAACCGATGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACCGAATC
118 TCAAAGATCGAACTAAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGCGAACCGAATC
* ** * * **
19988029 GATCTCCGGCTTTCGTATTCTGCCTCTCCAGTTGGCTGAACGCCTGCACGCCAGTTTCATGGGTT
183 GATCCCCAACTTGCGCATTCTGCCTCTCCAGGCGGCTGAACGCCTGCACGCCAGTTTCATGGGTT
19988094 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCCAG
248 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCCAG
** * *
19988159 ACCGGTAGCATGCAGAGGGGGACCAGGCTGA
313 ACCGACAGCACGCAGAGGGGGACCAGGCTAA
** * * * *
19988190 TCCTTGGCTTGCGCATTATGCCTCTTCAGTCGGCTCAGCGCCCGCACGCTTGCTCCGTGGGTTGA
1 TCCCCGGCTTGCGCATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
19988255 GTTAGGCATAC-GAGTTAATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGGAC
66 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGAAC
* * * ** * *
19988319 -AGGATCGAGGGTTGCGACAGCAGGATCGGTAGCACGGAGGGCGAACCGAGTCGATCCCCAACTT
131 TA-AACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGCGAACCGAATCGATCCCCAACTT
* * * * *
19988383 GCGCATTCTGTCTCTCCAGGCGGTTGAACGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA
195 GCGCATTCTGCCTCTCCAGGCGGCTGAACGCCTGCACGCCAGTTTCATGGGTTGGCTTAGGCATA
* * *
19988448 GGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAG-CAGGACTGACAGCAC
260 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCCA-GACCGACAGCAC
* *
19988512 GCAGAGGGGGA-CTGGGTCAA
324 GCAGAGGGGGACCAGGCT-AA
* * * * * *
19988532 TCCCCGGCTTGCGCATTGTGCCTCTTCGGCCGGCTCAGTGCTCGCACGCTCATTTTGTGGGTTGA
1 TCCCCGGCTTGCGCATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
19988597 CTTATGCATACGGAGTTCATTCCCAGTCTAAG
66 CTTAGGCATACGGAGTTCATCCCCAGTCTAAG
19988629 ATTGGACCAA
Statistics
Matches: 658, Mismatches: 116, Indels: 66
0.78 0.14 0.08
Matches are distributed among these distances:
341 7 0.01
342 279 0.42
343 57 0.09
347 1 0.00
352 1 0.00
355 1 0.00
356 45 0.07
360 1 0.00
362 1 0.00
364 1 0.00
367 24 0.04
368 139 0.21
369 1 0.00
371 1 0.00
372 1 0.00
376 2 0.00
377 2 0.00
380 91 0.14
381 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (343 bp):
TCCCCGGCTTGCGCATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGAAC
TAAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGCGAACCGAATCGATCCCCAACTTG
CGCATTCTGCCTCTCCAGGCGGCTGAACGCCTGCACGCCAGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCCAGACCGACAGCACGC
AGAGGGGGACCAGGCTAA
Found at i:19988763 original size:157 final size:159
Alignment explanation
Indices: 19988423--19988787 Score: 398
Period size: 157 Copynumber: 2.3 Consensus size: 159
19988413 CCTGCATGCC
* * *
19988423 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCAAACCGAGGG
* * * * * *
19988488 TTGTGGCAGCAGGACTGACAGCACGCAGAGGGGGACTGGGTCAATCCCCGGCTTGCGCATTGTGC
66 TTGCGGCAGCAGGACTGACAGCACACAGAGGGGGACTAGGTCAATCCCCGGCTTGCACACTCTGC
* * * * *
19988553 CTCTTCGGCCGGCTCAGTGCTCGCACGCT
131 CTCTTCGACCGGCTCAGCGCCCACACCCT
* * * * * * *
19988582 CATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCAAACTGA-
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACTAG-CCAAACCGAG
* * * * * **
19988644 GGTTGCGGTAGCAGGATTGATAGCATACAG-GGGTGACTAGGTTGATCCCCGGCTTGCACACTCT
64 GGTTGCGGCAGCAGGACTGACAGCACACAGAGGGGGACTAGGTCAATCCCCGGCTTGCACACTCT
* *
19988708 GCCTC-TCTGACCTGCTGAGCGCCCACACCCT
129 GCCTCTTC-GACCGGCTCAGCGCCCACACCCT
19988739 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
19988788 TACGGAGTTC
Statistics
Matches: 167, Mismatches: 34, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
156 5 0.03
157 87 0.52
158 27 0.16
159 45 0.27
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCAAACCGAGGG
TTGCGGCAGCAGGACTGACAGCACACAGAGGGGGACTAGGTCAATCCCCGGCTTGCACACTCTGC
CTCTTCGACCGGCTCAGCGCCCACACCCT
Found at i:19988795 original size:26 final size:26
Alignment explanation
Indices: 19988759--19988811 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19988749 GTTGGCTTAG
*
19988759 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19988785 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19988811 G
1 G
19988812 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19989521 original size:26 final size:26
Alignment explanation
Indices: 19989492--19989544 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19989482 GTTGACTTAG
19989492 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
19989518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19989544 G
1 G
19989545 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19989879 original size:159 final size:157
Alignment explanation
Indices: 19989518--19990020 Score: 501
Period size: 159 Copynumber: 3.2 Consensus size: 157
19989508 CCCAGTCTAA
* *
19989518 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGAT-TGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * * *
19989583 GGACGCAAGGGGGACGGGGCTCATCCCCGGATTGCACATTCTGCCTCTCCGGCCGGCTAAGCGCC
65 GCACGCGAGGGGGACGGGGCTAATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCC
* *
19989648 CGT-ACGCCCGTTTCGTGGTTTGGCTTAG
130 C-TCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** * ** * * * *
19989676 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAGCTGGACTGAGGGTTGTGGCAACGGGACCGGC
1 GCATACGGAGTTCATTCCCA-ATCTAAGATTGA-CCAGACCGAGGGTTACGGCAGCAGGATCGAC
* * * * * *
19989740 AGCATGCTGAGGGGGATC-GGGCTGATCCTCGGCTTGCGCATTATGCCTCTTCGGCAAGCTCACC
64 AGCACGC-GAGGGGGA-CGGGGCTAATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGC
* * * *
19989804 GCCCTCATGCTCGTTCCGTGGGTTGACTTAT
127 GCCCTCACGCTCGTTTCGTGGGTTGGCTTAG
* *
19989835 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATT-GACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* *
19989900 GCACGC-AGGGGAGGACTGGGCCAATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCG
65 GCACGCGA-GGG-GGACGGGGCTAATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCG
* *
19989964 CTCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCTCACGCTCGTTTCGTGGGTTGGCTTAG
* *
19989994 GCATACGGAGTTCGTTCCCTATCTAAG
1 GCATACGGAGTTCATTCCCAATCTAAG
19990021 CATACAGAGT
Statistics
Matches: 271, Mismatches: 64, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 54 0.20
159 207 0.76
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATTGACCAGACCGAGGGTTACGGCAGCAGGATCGACAG
CACGCGAGGGGGACGGGGCTAATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCCC
TCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:19990024 original size:26 final size:26
Alignment explanation
Indices: 19989994--19990072 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
19989984 GTTGGCTTAG
*
19989994 GCATACGGAGTTCGTTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
*
19990020 GCATACAGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
19990046 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
19990072 G
1 G
19990073 ATTTTGAGAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
25 1 0.02
26 48 0.98
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:19990506 original size:158 final size:160
Alignment explanation
Indices: 19990095--19990521 Score: 440
Period size: 159 Copynumber: 2.7 Consensus size: 160
19990085 GGTGCAGCGA
* * * * * * *
19990095 GGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCTCTGACCGACTGAGCACCTGCACGC-CTG
1 GGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCTGCACGCTC-A
* *
19990159 TTTCATGGGTTGGCTGAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACGAAGGGT
65 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGCCCCAGCCGGACGAAGGGT
* * * *
19990223 TGTGGTAGCGGGATCGGCAGCACGCAGAGGG
130 TGTGGCAACAGGATCGACAGCACGCAGAGGG
* * * * * * * *
19990254 GGACCGGGTCGATCCCCGACTTGTGCATTACGCCTCTTCGGCCTGCTCAGCGCCCGCACGCTCAT
1 GGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCTGCACGCTCAT
* * ** *
19990319 TTCGTGGGTTGACTTTGGCATAC-GAAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACTG-AGG
66 TTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCCATGTCTAAGCCCCAG-CCGGAC-GAAGG
* *
19990380 GTTGTGGCAACAGGATCTACAGCACGTAG-GGG
128 GTTGTGGCAACAGGATCGACAGCACGCAGAGGG
* * * *
19990412 GGATCGGGTC-AGTCCTCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGTGCCTGCACGCTCA
1 GGACCGGGTCGA-TCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCTGCACGCTCA
* *
19990476 TTTCGTGGGTTGGCTTAGGCACACAGAGTTCATT-CCATGTTTAAGC
65 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGC
19990522 ATGCAGAGTT
Statistics
Matches: 215, Mismatches: 44, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 91 0.42
159 115 0.53
160 5 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (160 bp):
GGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCTGCACGCTCAT
TTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGCCCCAGCCGGACGAAGGGTT
GTGGCAACAGGATCGACAGCACGCAGAGGG
Found at i:19991088 original size:159 final size:158
Alignment explanation
Indices: 19990716--19991209 Score: 384
Period size: 158 Copynumber: 3.1 Consensus size: 158
19990706 CCCAACCTAA
* * * * * * * * * *
19990716 GCATACGAAGTTCATTGCCAGTCTAATATCAGACCGGATCGAGGGTTGCGGTAGTAGGGTCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* ** * * * * * * * * ** * * * *
19990781 ACATACAAGGGGGATCGGGCCGATTCTCGGCTTGCGCATTCTGCCTTTCCGACCGGCTGAGCACC
66 GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCAGCTCAACGCC
* * *
19990846 CGCAC-ATCCATTTCATGGGTTGGCTTAG
131 CGCACGCT-CGTTTCATGGGTTGACTTAG
* * * ** * * ** *
19990874 CCATAGGGGAGTTCATT-CCATGTCTAAGGCCCAGTCGA-ACCGAGGGTTGTGGCAGCGGGATCG
1 GCATA-CGGAGTTCATTCCCA-ATCTAA-GATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCG
* *
19990937 ACAGCACGCAGAGGGGGACCGAGTCGAT-CCCTGACTTGCGCATTATGCCTCTCCGGTCAGCTCA
63 ACAGCACGCAG-GGGGGACCGAGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGGTCAGCTCA
* * *
19991001 ATGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
126 ACGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* ** *
19991034 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCATGATTTATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
19991099 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCAGCTCAACGCC
* * *
19991164 CGCATGCTCGTTTTATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
19991192 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
19991210 ATGTCTAGGC
Statistics
Matches: 261, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
158 97 0.37
159 92 0.35
160 71 0.27
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCAGCTCAACGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:19991429 original size:197 final size:184
Alignment explanation
Indices: 19991034--19991584 Score: 577
Period size: 197 Copynumber: 2.9 Consensus size: 184
19991024 GTTGACTTAG
* * * * ****
19991034 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGC-AGCAGCATGATTTAT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGA-CAGCAGGATCGGC
* *
19991098 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGC
* * * * * *
19991163 CCGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAG
130 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAA
* *
19991218 GCATACGGAGTTCATTCCCAGTCTAAGAT-AAGACCGGACCCGAGGGTTGCGGTAACAGGACCAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAA-ACCAGA-CCGAGGGTT---G---C--GA-CAG
* * * *
19991282 CAGCAAGATTGGCAGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGTCTCTCCG
55 CAG---GATCGGCAGCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCG
* * *
19991347 GTCGGCTGGGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCA-AT
117 GTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATAT
19991411 CTAA
181 CTAA
* *** *
19991415 GCATATGAAGTTCATTTTTAGTCTAAGATCAAACCAGACCGGGGGTTGCGACAGCAGGATCGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCGGCA
* * * ** *
19991480 GCATGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTTTGCCTCTCTAGCCGGCTGAGTGCC
66 GCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
* * * *
19991545 TGCACACCCGTTTCATGGGTTGACTTAGGCATAGGGAGTT
131 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
19991585 AATTCAACGT
Statistics
Matches: 305, Mismatches: 46, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
183 1 0.00
184 129 0.42
185 9 0.03
187 6 0.02
188 3 0.01
190 1 0.00
191 1 0.00
193 1 0.00
194 6 0.02
196 8 0.03
197 135 0.44
198 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCGGCA
GCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAA
Found at i:19991584 original size:698 final size:694
Alignment explanation
Indices: 19990099--19991946 Score: 2189
Period size: 698 Copynumber: 2.6 Consensus size: 694
19990089 CAGCGAGGAC
* * * *
19990099 CGGGCCGATCCTCGACTTGCGCATTCTACCTCTCTGACCGACTGAGCACCTGCACGCCTGTTTCA
1 CGGGCCGATCCTCG-CTTGCGCATTCTGCCTCTCTGACCGGCTGAGCACCTGCACACCCGTTTCA
* ** *
19990164 TGGGTTGGCTGAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CGAAGGGTTGTGG
65 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCG-AGGGTTGTGG
* * *
19990228 TAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTACGCCTCTTC
129 CAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGTCGATCCCCGACTTGTGCATTATGCCTCTTC
* * * * *
19990293 GGCCTGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTTGGCATACGAAGTTCATTCCCAGT
194 GGTCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
19990358 CTAAGATCGGACCGGACTGAGGGTTGTGGCAACAGGATCTACAGCACGTAGGGGGGATCGGGTC-
259 CTAAGATC-GACCAGACCGAGGGTTG-GGCAGCAGGATCTACAGCACGCAGGGGGGACCGGGCCG
* * * * *
19990422 AGTCCTCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGTGCCTGCACGCTCATTTCGTGGGTT
322 A-TCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
* * * * * * *
19990487 GGCTTAGGCACACAGAGTTCATTCCATGTTTAAGCATGCAGAGTTCATTCCCAGTCAAAGATCAA
386 GGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAA
* * ** * *
19990552 ACTGGACTGAGGGTTGCGGCAGTAGGACCAGCAGCAGGATCGATAGCACACAGGGGGGACCGGAC
451 ACCGGACCGAGGGTTGCGGCAACAGGACCAGCAGCAAGATCGACAGCACACAGGGGGGACCGGAC
* * *
19990617 CGATCCCTGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCACCCGCATGCTCATTTTATGGGT
516 CGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCACCCGCACGCTCATTTCATGGGT
*
19990682 TGACTTAGGCATACGAAGTTCATCCCCAACCTAAGCATACGAAGTTCATTGCCAGTCTAATATCA
581 TGACTTAGGCATACGAAGTTCATCCCCAACCTAAGCATACGAAGTTCATTGCCAGTCTAAGATCA
* * * ** * *
19990747 GACCGGATCGAGGGTTGCGGTAGTAGGGTCGACAACATACAAGGGGGAT
646 AACCAGACCGAGGGTTGCGACAGCAGGATCGACAACATACAAGGGGGAT
* * * * * *
19990796 CGGGCCGATTCTCGGCTTGCGCATTCTGCCTTTCCGACCGGCTGAGCACCCGCACATCCATTTCA
1 CGGGCCGATCCTC-GCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCACCTGCACACCCGTTTCA
* * * *
19990861 TGGGTTGGCTTAGCCATAGGGGAGTTCATTCCATGTCTAAGGCCCAGTCGAACCGAGGGTTGTGG
65 TGGGTTGGCTTAGGCATA-GGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGG
* * * *
19990926 CAGCGGGATCGACAGCACGCAGAGGGGGACCGAGTCGATCCCTGACTTGCGCATTATGCCTCTCC
129 CAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGTCGATCCCCGACTTGTGCATTATGCCTCTTC
** * *
19990991 GGTCAGCTCAATGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
194 GGTCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
19991056 CTAAGATCAGACCAGACCGAGGGTTGCAGCAGCATGATTTATAGCACGCAGGGGGGACCGGGCCG
259 CTAAGATC-GACCAGACCGAGGGTTG-GGCAGCAGGATCTACAGCACGCAGGGGGGACCGGGCCG
* ** * * **
19991121 ATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCTCGTTTTATGGGTTG
322 ATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
19991186 GCTTAGGCATACGGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AAG
387 GCTTAGGCATACGGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAA-
* * * ** *
19991250 ACCGGACCCGAGGGTTGCGGTAACAGGACCAGCAGCAAGATTGGCAGCATGCAGGGGGGACCGGG
451 ACCGGA-CCGAGGGTTGCGGCAACAGGACCAGCAGCAAGATCGACAGCACACAGGGGGGACCGGA
* * * ** * ** * *
19991315 TCGATCCCCGGCTTGTGCATTCTGTCTCTCCGGTCGGCTGGGTGCCCGCACGCTCGTTTCGTGGG
515 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCACCCGCACGCTCATTTCATGGG
* * * * ***
19991380 TTGACTTAGGTATACGGAGTTCATCCCCAATCTAAGCATATGAAGTTCATTTTTAGTCTAAGATC
580 TTGACTTAGGCATACGAAGTTCATCCCCAACCTAAGCATACGAAGTTCATTGCCAGTCTAAGATC
* * * * *
19991445 AAACCAGACCGGGGGTTGCGACAGCAGGATCGGCAGCATGCAGGGGGGAT
645 AAACCAGACCGAGGGTTGCGACAGCAGGATCGACAACATACAAGGGGGAT
* * **
19991495 CGGGCCGATCCCCAGCTTGCGCATTTTGCCTCTCT-AGCCGGCTGAGTGCCTGCACACCCGTTTC
1 CGGGCCGATCCTC-GCTTGCGCATTCTGCCTCTCTGA-CCGGCTGAGCACCTGCACACCCGTTTC
* * * *
19991559 ATGGGTTGACTTAGGCATAGGGAGTTAATTCAACGTCTAAGCCCCA-ACTGGACCGAGGGTTGTG
64 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAC-GGACCGAGGGTTGTG
* * * * ** *
19991623 GCAGCGGGATCGGTAGCACACAAAAGGGGACC-AGGTCGATCCCCGGGTCGTGCATTATGCCTCT
128 GCAGCGGGATCGGCAGCACGCAGAGGGGGACCGA-GTCGATCCCCGACTTGTGCATTATGCCTCT
* * * * * *
19991687 TCGATCGGCTCAGCGCCCGCACACTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTA
192 TCGGTCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * **
19991752 GTCTAACATCGAACCAGACCAAGGGTTGGGCTGCAGGATCGACAGCACGTGGGGGGGGACCGGGC
257 GTCTAAGATCG-ACCAGACCGAGGGTTGGGCAGCAGGATCTACAGCACG-CAGGGGGGACCGGGC
* * * *
19991817 CGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCACCCGTACACTCATTTCGTGGGT
320 CGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* * *
19991882 TGGCTTAGGCGTACGGTGGTTTATTCCATGTCCTAAGGCATACGGAGTTCATT-CCAGTCTAAGA
385 TGGCTTAGGCATACGG-AGTTCATTCCATGT-CT-AGGCATACGGAGTTCATTCCCAGTCTAAGA
19991946 T
447 T
19991947 TTTGGAAGTC
Statistics
Matches: 964, Mismatches: 173, Indels: 25
0.83 0.15 0.02
Matches are distributed among these distances:
697 89 0.09
698 566 0.59
699 277 0.29
700 14 0.01
701 18 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (694 bp):
CGGGCCGATCCTCGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCACCTGCACACCCGTTTCAT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCA
GCGGGATCGGCAGCACGCAGAGGGGGACCGAGTCGATCCCCGACTTGTGCATTATGCCTCTTCGG
TCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCGACCAGACCGAGGGTTGGGCAGCAGGATCTACAGCACGCAGGGGGGACCGGGCCGATCC
CCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGG
ACCGAGGGTTGCGGCAACAGGACCAGCAGCAAGATCGACAGCACACAGGGGGGACCGGACCGATC
CCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACT
TAGGCATACGAAGTTCATCCCCAACCTAAGCATACGAAGTTCATTGCCAGTCTAAGATCAAACCA
GACCGAGGGTTGCGACAGCAGGATCGACAACATACAAGGGGGAT
Found at i:19993154 original size:27 final size:27
Alignment explanation
Indices: 19993114--19993169 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
19993104 GGGTTGGCTT
19993114 AGGCATACGAAGTTCATT-CCATGTCTA
1 AGGCATACGAAGTTCATTCCCA-GTCTA
19993141 AGGCATAC-AGAGTTCATTCCCAGTCTA
1 AGGCATACGA-AGTTCATTCCCAGTCTA
19993168 AG
1 AG
19993170 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 1 0.04
27 23 0.85
28 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (27 bp):
AGGCATACGAAGTTCATTCCCAGTCTA
Found at i:19993439 original size:171 final size:171
Alignment explanation
Indices: 19993183--19993496 Score: 409
Period size: 171 Copynumber: 1.8 Consensus size: 171
19993173 AGACTGGTTC
*
19993183 GAGGGTTGTGGCATCAGGACCAGCAGTAGGATCGACAGCACGCAGGAGGGGATCAGGCTGATCCC
1 GAGGGTTGTGGCAGCAGGACCAGCAGTAGGATCGACAGCACGCAGGAGGGGATCAGGCTGATCCC
** * * ** * * *
19993248 CTGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCGCCCATATGCTCGTTTCATGGGTTGGCTTA
66 CAACTTGCACATTATGCCTCTCCGGCCGACCAAGCGCCCACACGCTCGTTTCATGGGTTGACTTA
19993313 GGCATACGGAGTTCATTCCATGTCTAAGCCGTAGCCAGACT
131 GGCATACGGAGTTCATTCCATGTCTAAGCCGTAGCCAGACT
* * * * * *
19993354 GAGGTTTGTGGCAGCAGGACCGGTAGT-GAGATCGACAGCATGTA-GAGGGGGA-CCGGACTGAT
1 GAGGGTTGTGGCAGCAGGACCAGCAGTAG-GATCGACAGCACGCAGGA-GGGGATCAGG-CTGAT
* * *
19993416 CCCCAACTTGCGCATTATGCCTCTCCGGCCGACCAAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
63 CCCCAACTTGCACATTATGCCTCTCCGGCCGACCAAGCGCCCACACGCTCGTTTCATGGGTTGAC
19993481 TTAGGCATACGGAGTT
128 TTAGGCATACGGAGTT
19993497 GATCCCCAGT
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
170 6 0.05
171 115 0.95
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (171 bp):
GAGGGTTGTGGCAGCAGGACCAGCAGTAGGATCGACAGCACGCAGGAGGGGATCAGGCTGATCCC
CAACTTGCACATTATGCCTCTCCGGCCGACCAAGCGCCCACACGCTCGTTTCATGGGTTGACTTA
GGCATACGGAGTTCATTCCATGTCTAAGCCGTAGCCAGACT
Found at i:19993521 original size:26 final size:26
Alignment explanation
Indices: 19993485--19993537 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19993475 GTTGACTTAG
*
19993485 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
19993511 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
19993537 G
1 G
19993538 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:19993874 original size:159 final size:158
Alignment explanation
Indices: 19993511--19994013 Score: 405
Period size: 159 Copynumber: 3.2 Consensus size: 158
19993501 CCCAGTCTAA
* * *
19993511 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
* * * *
19993576 GCACGTAAGGGGGATTGGGCTCATCCCCAGCTTGCACATTCTACCTCTCCAGCCGGCTAAGCGCC
66 GCACGTAAGGGGGATCGGGCTCATCCCCAGCTTGCACATTATACCTCTCCAGCAGGCTAACCGCC
* *
19993641 TGCACGCCCGTTTCGTGGGTTGGCTTAG
131 TGCACGCCCGTTTCATGGGTTGACTTAG
** * * *
19993669 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTC-GACTGAGGGTTGTGGCAGCGGGACCG
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGAC-CGGACCGAGGGTTGCGGCAGCAGGACCG
* * * * * * * *
19993731 GCAGCATGCTGAA-GGGGATCGGGC-CAATCCTC-GACTTGCTCATTATGCCTCTTCGGTAGGCT
63 ACAGCACG-T-AAGGGGGATCGGGCTC-ATCCCCAG-CTTGCACATTATACCTCTCCAGCAGGCT
* * *
19993793 CACCG-CTCGCACGCTCGTTTCATGGGTTGACTTAT
124 AACCGCCT-GCACGCCCGTTTCATGGGTTGACTTAG
* * * *
19993828 GCTTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
* * * ** * * * * * *
19993893 GCATGTAGGGGGGGA-CTGGG-TCGATCTCTGGCTTGCGCATTCTGCCTCTCCGGCCA-GCTGAG
66 GCACGTA-AGGGGGATC-GGGCTC-ATCCCCAGCTTGCACATTATACCTCTCCAG-CAGGCTAAC
* * * *
19993955 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
127 CGCCTGCACGCCCGTTTCATGGGTTGACTTAG
* * *
19993987 GCATACGGAGTTCGTTCCCTGTCTAAG
1 GCATAGGGAGTTCATTCCCAGTCTAAG
19994014 CATACGGAGT
Statistics
Matches: 273, Mismatches: 54, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
157 3 0.01
158 61 0.22
159 201 0.74
160 8 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
GCACGTAAGGGGGATCGGGCTCATCCCCAGCTTGCACATTATACCTCTCCAGCAGGCTAACCGCC
TGCACGCCCGTTTCATGGGTTGACTTAG
Found at i:19994023 original size:26 final size:26
Alignment explanation
Indices: 19993987--19994039 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19993977 GTTGGCTTAG
*
19993987 GCATACGGAGTTCGTTCCCT-GTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
19994013 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19994039 G
1 G
19994040 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19994131 original size:11 final size:11
Alignment explanation
Indices: 19994115--19994149 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
19994105 GGCACAATCA
19994115 TCGGAGCATCG
1 TCGGAGCATCG
19994126 TCGGAGCATCG
1 TCGGAGCATCG
*
19994137 TCGGAGTATCG
1 TCGGAGCATCG
19994148 TC
1 TC
19994150 AGAGAGCCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.34, T:0.23
Consensus pattern (11 bp):
TCGGAGCATCG
Found at i:19994760 original size:25 final size:26
Alignment explanation
Indices: 19994726--19994777 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
19994716 GTTGACTTAG
19994726 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19994751 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19994777 G
1 G
19994778 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19999690 original size:159 final size:156
Alignment explanation
Indices: 19999488--19999776 Score: 373
Period size: 159 Copynumber: 1.8 Consensus size: 156
19999478 ACCGATCCCC
* * * * ** *
19999488 GGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGTTTTCG
1 GGCTTGCGCATTCTACCTCTCCGATCGGCTAAGCACCCCCACGCCCATTTCGTGGGTTGGCTTAG
* * *
19999553 ACATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGTGA-GACCGAC
66 ACATACGGAGTTC---CCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAGT-ACGACCGAC
19999617 AGCATGCAGAGGGGGACTGAGCTGATCCTT
127 AGCATGCAGAGGGGGACTGAGCTGATCCTT
* ***
19999647 GGCTTGCGCATTCTACCTCTCCGGTCGGCTAAGCACCCCCACGCTTGTTTCGTGGGTTGGCTTAG
1 GGCTTGCGCATTCTACCTCTCCGATCGGCTAAGCACCCCCACGCCCATTTCGTGGGTTGGCTTAG
* * * *
19999712 GCATACGGAGTTCCCATGTCTAAGCCCTAGCCGGACCGAGGGTTATGGCAGTACGACCGGCAGCA
66 ACATACGGAGTTCCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAGTACGACCGACAGCA
19999777 AGATCGGCAG
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
155 1 0.01
156 45 0.41
159 65 0.59
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (156 bp):
GGCTTGCGCATTCTACCTCTCCGATCGGCTAAGCACCCCCACGCCCATTTCGTGGGTTGGCTTAG
ACATACGGAGTTCCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAGTACGACCGACAGCA
TGCAGAGGGGGACTGAGCTGATCCTT
Found at i:19999910 original size:26 final size:26
Alignment explanation
Indices: 19999880--19999932 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19999870 GTTGACTTAG
*
19999880 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
19999906 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
19999932 G
1 G
19999933 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:20000411 original size:26 final size:26
Alignment explanation
Indices: 20000381--20000433 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20000371 GTTGGCTTAG
20000381 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20000407 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20000433 G
1 G
20000434 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20001345 original size:26 final size:26
Alignment explanation
Indices: 20001315--20001367 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20001305 GTTGAGTTAG
20001315 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
20001341 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20001367 G
1 G
20001368 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20001865 original size:26 final size:26
Alignment explanation
Indices: 20001815--20001867 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20001805 GTTGGCTTAG
*
20001815 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20001841 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACGGAGTTCATTCCAT-ATCTAA
20001867 G
1 G
20001868 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20002564 original size:26 final size:26
Alignment explanation
Indices: 20002535--20002590 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
20002525 TGGGTTGGCT
* *
20002535 TAAGCATATGGATTTCATTCC-ATGTC
1 TAAGCATACGGAGTTCATTCCTA-GTC
20002561 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCTAGTC
20002587 TAAG
1 TAAG
20002591 AGTTTAAGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCTAGTC
Found at i:20003284 original size:26 final size:26
Alignment explanation
Indices: 20003255--20003307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20003245 GTTGACTTAG
20003255 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20003281 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20003307 G
1 G
20003308 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20003681 original size:158 final size:157
Alignment explanation
Indices: 20003281--20003683 Score: 445
Period size: 158 Copynumber: 2.5 Consensus size: 157
20003271 CCCAGTCTAA
* * **
20003281 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGC-AGCAATAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGA-CAGCAGGATCGAC
* * * * * * *
20003345 AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAAAGC
64 AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGGCTCAAAGC
**
20003410 CCGCACGCCCGTTTCATGGATTGGCTTAG
129 CCGCACGCCCGTTTCATGGATTAACTTAG
* ** * * * * * *
20003439 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCTGACCGA-GGTTGTGGCAGCGGGA-CCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGCGACAGCAGGATCGA-
* * * *
20003501 CAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGTGCATTATACCTCTTCGGCCGGCTCAAC
63 CAGCACGCAG-GGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGGCTCAAA
* *
20003566 GCCCGCACGCTCGTTTCATGGGTTAACTTAG
127 GCCCGCACGCCCGTTTCATGGATTAACTTAG
*
20003597 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCGACAGCAGGATCGACA
*
20003662 GCACGTAGGGGGGACCGGGTCG
65 GCACGCAGGGGGGACCGGGTCG
20003684 GCCGGCTCAA
Statistics
Matches: 197, Mismatches: 39, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 27 0.14
158 139 0.71
159 28 0.14
160 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGGCTCAAAGCCC
GCACGCCCGTTTCATGGATTAACTTAG
Found at i:20003792 original size:129 final size:129
Alignment explanation
Indices: 20003552--20003793 Score: 360
Period size: 129 Copynumber: 1.9 Consensus size: 129
20003542 TTATACCTCT
* * *
20003552 TCGGCCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCA
1 TCGGCCGGCTCAACACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACAGAATTCATTCCCA
**
20003617 GTCTAAGATCAGACAGGACCGAGGGTTGCGACAGCAGGATTGACAGCACGTAGGGGGGACCGGG
66 GTCTAAGATCAGACAGGACCGAGGGTTGCGACAGCAGGATCAACAGCACGTAGGGGGGACCGGG
* **
20003681 TCGGCCGGCTCAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAATTCATTCCCA
1 TCGGCCGGCTCAACACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACAGAATTCATTCCCA
* * * *
20003746 GTCTAAGATCGGATC-GGACCGAGGGTTGTGGCAGTAGGATCAACAGCA
66 GTCTAAGATCAGA-CAGGACCGAGGGTTGCGACAGCAGGATCAACAGCA
20003794 GGATCGGCAG
Statistics
Matches: 100, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
129 99 0.99
130 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.20
Consensus pattern (129 bp):
TCGGCCGGCTCAACACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACAGAATTCATTCCCA
GTCTAAGATCAGACAGGACCGAGGGTTGCGACAGCAGGATCAACAGCACGTAGGGGGGACCGGG
Found at i:20003894 original size:26 final size:26
Alignment explanation
Indices: 20003857--20003909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20003847 ACCGACTTAG
*
20003857 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20003883 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20003909 G
1 G
20003910 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20004229 original size:26 final size:26
Alignment explanation
Indices: 20004200--20004252 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20004190 GTTTGCTTAG
20004200 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20004226 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20004252 G
1 G
20004253 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20004712 original size:27 final size:28
Alignment explanation
Indices: 20004671--20004724 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
20004661 TGGCCTTATG
20004671 GCATACGTGAGTTCATT-CCATGTCTAAA
1 GCATACGTGAGTTCATTCCCA-GTCTAAA
20004699 GCATACG-GAGTTCATTCCCAGTCTAA
1 GCATACGTGAGTTCATTCCCAGTCTAA
20004725 GATCAGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (28 bp):
GCATACGTGAGTTCATTCCCAGTCTAAA
Found at i:20005084 original size:26 final size:26
Alignment explanation
Indices: 20005054--20005106 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20005044 GTTAACTTAG
20005054 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20005080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20005106 G
1 G
20005107 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20005791 original size:26 final size:26
Alignment explanation
Indices: 20005761--20005813 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20005751 GTTGATTTAG
20005761 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20005787 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20005813 G
1 G
20005814 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20005981 original size:26 final size:26
Alignment explanation
Indices: 20005945--20005997 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20005935 GTTGGCTTAG
20005945 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20005971 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20005997 G
1 G
20005998 AGTTTGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20007217 original size:26 final size:26
Alignment explanation
Indices: 20007168--20007220 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20007158 GTTGGCTTAG
*
20007168 GCATACGGAGTTCATTTCGTGTCTAA
1 GCATACGGAGTTCATTTCCTGTCTAA
20007194 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCCT-GTCTAA
20007220 G
1 G
20007221 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCTGTCTAA
Found at i:20007561 original size:183 final size:183
Alignment explanation
Indices: 20007007--20007561 Score: 546
Period size: 183 Copynumber: 3.0 Consensus size: 183
20006997 TGGGTTGACG
* * * **
20007007 TAAGCATACGGATTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTACGGCAGCAATATCG
1 TAAGCATACGGAATTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * **
20007072 ACAGCACGTAGGTGGGGACTGGGCCA-ATCCCTGGCTTGCTCATTCTGTTCTCCGACCGGCTGAG
66 ACAGCACGCAGG-GGGGA-TCGGCCAGATCCCCGGCTTGCTCATTCTCCTCTCCGACCGGCTGAG
* * * * * *
20007136 TGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCGTGTC
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTC
* * ** * * *
20007191 TAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAGACCGAAGGTTGCGGTAGCAGGATAG
1 TAAGCATACGGAATTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * *
20007256 GCAGCACGCAGGGGGGACCGGGTC-GATCCCCGACTTGCTCA-TCTGCCTCTTCGGCCGGTTGAG
66 ACAGCACGCAGGGGGGATC-GGCCAGATCCCCGGCTTGCTCATTCT-CCTCTCCGACCGGCTGAG
* * * * ** * ** *
20007319 CGCCCGTACGCTTGTTGCGGGGGTTAACTTAGGCATATGGAGTTCATCCCCA-ATC
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TACATGTC
* * **
20007374 TAAGCATACAGAATTCATTCCCAGTCTAAGATCAGA-CTGGATTGAGGGTTGCGGCAGCAGGATC
1 TAAGCATACGGAATTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGCAGCAGGATC
* * * *
20007438 GATAGCACGCAGGGGGGATCGG-CAGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAG
65 GACAGCACGCAGGGGGGATCGGCCAGATCCCCGGCTTGCTCATTCT-CCTCTCCGACCGGCTGAG
* * *
20007502 CGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTC
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTC
20007557 TAAGC
1 TAAGC
20007562 CCCAGCCTGG
Statistics
Matches: 291, Mismatches: 72, Indels: 17
0.77 0.19 0.04
Matches are distributed among these distances:
181 1 0.00
182 22 0.08
183 203 0.70
184 65 0.22
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (183 bp):
TAAGCATACGGAATTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCG
ACAGCACGCAGGGGGGATCGGCCAGATCCCCGGCTTGCTCATTCTCCTCTCCGACCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTC
Found at i:20007745 original size:24 final size:25
Alignment explanation
Indices: 20007705--20007753 Score: 91
Period size: 24 Copynumber: 2.0 Consensus size: 25
20007695 CATACAGAGT
20007705 TCATTCCATGTCTAACAGTTTGAGC
1 TCATTCCATGTCTAACAGTTTGAGC
20007730 TCATTCCA-GTCTAACAGTTTGAGC
1 TCATTCCATGTCTAACAGTTTGAGC
20007754 CACGGTGCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.35
Consensus pattern (25 bp):
TCATTCCATGTCTAACAGTTTGAGC
Found at i:20008450 original size:26 final size:26
Alignment explanation
Indices: 20008410--20008462 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20008400 GTTGACTTAG
20008410 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
* * * *
20008436 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
20008462 G
1 G
20008463 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:20008936 original size:158 final size:158
Alignment explanation
Indices: 20008486--20008938 Score: 418
Period size: 159 Copynumber: 2.9 Consensus size: 158
20008476 AAGGGTTACA
* * * *
20008486 GCAGTAGGATCGACAGCAC-CTAGGGGGGATCGGGCTGATCC-CTGGCTTGCGCATTCTGCCTCT
1 GCAGTAGGATCGACAGCACGCAAGGGGGGATCAGGCCGATCCTC-GGCTTGCACATTCTGCCTCT
* * * * *
20008549 CCGACTGACTGACTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCAT
65 CCGGCTGGCTGAC-GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
20008614 GTCTAAGCCCCAGCCGGACCGAGGGTTGTG
129 GTCTAAGCCCCAGCCGGACCGAGGGTTGTG
** * * * * * *
20008644 GCAGCGGGA-CTAGCAGTACGCAAAGGAGGA-CAGGGCCGATCCTCGGCTTACACATTATGCCTC
1 GCAGTAGGATCGA-CAGCACGCAAGGGGGGATCA-GGCCGATCCTCGGCTTGCACATTCTGCCTC
** * * * * * * *
20008707 TCTAGCCGGCTCAATGCCCACATGCTCATTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCC
64 TCCGGCTGGCT-GACGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CC
* ** * * *
20008772 A-ATCTAAG-ATCGGACTGGACTGAGGGTTGTG
127 ATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTG
* *
20008803 GCAGTAGGATCGACAGCACGC-AGGGGGGATCAGGCC-AGTCCTCGGCTTGCTCATTCTACCTCT
1 GCAGTAGGATCGACAGCACGCAAGGGGGGATCAGGCCGA-TCCTCGGCTTGCACATTCTGCCTCT
* * * * *
20008866 CCGGCTGGCTGAGCGCCTGCACGCTCGTTTCTTAGGTTGGCTTAGGCATACAGAGTTCATTCCAT
65 CCGGCTGGCTGA-CGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
20008931 GTCTAAGC
129 GTCTAAGC
20008939 ATACAAAGTT
Statistics
Matches: 225, Mismatches: 57, Indels: 25
0.73 0.19 0.08
Matches are distributed among these distances:
157 7 0.03
158 97 0.43
159 114 0.51
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GCAGTAGGATCGACAGCACGCAAGGGGGGATCAGGCCGATCCTCGGCTTGCACATTCTGCCTCTC
CGGCTGGCTGACGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGCCGGACCGAGGGTTGTG
Found at i:20008948 original size:26 final size:26
Alignment explanation
Indices: 20008911--20008963 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20008901 GTTGGCTTAG
*
20008911 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
20008937 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20008963 G
1 G
20008964 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20009929 original size:26 final size:26
Alignment explanation
Indices: 20009899--20009951 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20009889 GTTGACTTAG
*
20009899 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20009925 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20009951 G
1 G
20009952 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20010287 original size:159 final size:156
Alignment explanation
Indices: 20009925--20010320 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 156
20009915 CCCAGTCTAA
* * * *
20009925 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATAGGACCGAAGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATC-GATCGGACCGAGGGTTGTGGTAGCAGGACCGACA
* * * * * * * **
20009990 GCTCGTAGGGGGGACCAGGCCGATCCCCAGCTTGGGCATTCTGCCTCTCTGGCCTGTTGAGTGCC
64 GCACGTAGGGGGGACCAGGCCAATCCCCAGCTTGCGCATTATGCCTCTCTAGCCTGATCAGCACC
* *
20010055 CGCACACCCGTTTCATGGGTTGGCTTAG
129 CGCACACCCGTGTCATGGGTTGACTTAG
* ** * * *
20010083 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTGGCGGGACCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGA-TCGGACCGAGGGTTGTGGTAGCAGGACCGACA
* *
20010148 GCACGTAGAGGGGGACC-GAGCCAATCCTCGGCTTGCGCATTATGCCTCTCTAG-CTGGATCAGC
64 GCACGTAG-GGGGGACCAG-GCCAATCCCCAGCTTGCGCATTATGCCTCTCTAGCCT-GATCAGC
* *
20010211 ACCCGCACGCTCGTGTCATGGGTTGACTTAG
126 ACCCGCACACCCGTGTCATGGGTTGACTTAG
* * * * * *
20010242 GCATACGGAGTTCATTCCTAGTCTAAGATCGACCCGAACTGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGA-TCGGACCGAGGGTTGTGGTAGCAGGACCGACA
* *
20010307 GCACGCAAGGGGGA
64 GCACGTAGGGGGGA
20010321 TCACGGTGGT
Statistics
Matches: 192, Mismatches: 40, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 65 0.34
159 122 0.64
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGATCGGACCGAGGGTTGTGGTAGCAGGACCGACAGC
ACGTAGGGGGGACCAGGCCAATCCCCAGCTTGCGCATTATGCCTCTCTAGCCTGATCAGCACCCG
CACACCCGTGTCATGGGTTGACTTAG
Found at i:20010437 original size:26 final size:26
Alignment explanation
Indices: 20010401--20010451 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20010391 TTGGCTTAGG
*
20010401 CATACGGAGTTGATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
20010427 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
20010452 GATCGGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:20010795 original size:26 final size:26
Alignment explanation
Indices: 20010765--20010817 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20010755 GTTGACTTAG
20010765 GCATATAGAGATCA-TCCCTAGTCTAA
1 GCATATAGAGATCATTCCC-AGTCTAA
* *
20010791 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGATCATTCCCAGTCTAA
20010817 G
1 G
20010818 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGATCATTCCCAGTCTAA
Found at i:20010927 original size:26 final size:26
Alignment explanation
Indices: 20010897--20010948 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20010887 GTTTACTTAG
20010897 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
20010923 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20010949 TATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20011213 original size:158 final size:159
Alignment explanation
Indices: 20011029--20011424 Score: 449
Period size: 159 Copynumber: 2.5 Consensus size: 159
20011019 TTGTGCGCTC
* * * *
20011029 TGCCTCTCTGGTTGGCTGAGCACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
1 TGCCTCTCCGGTCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * *
20011094 ATTCCATGTCTAAGGCCCAACCGGATAG-GGGTTGTGGCAGC-GAGACCGACAGCACGCAGAGAG
66 ATTCCATGTCTAAGACCCAACCAGACAGAGGGTTGTGGCAGCAG-GACCGACAGCACGCAGAGAG
* *
20011157 GGATCGGGCCGATCCCTGGCTTGCGCATTA
130 GGATCGGGCCGATCCCCGGCTTACGCATTA
* * * * * *
20011187 TGCCTCTCCGGTCGGTTTAGCACCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTA
1 TGCCTCTCCGGTCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* **** * * *
20011252 ATTCCCA-GTGTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGAG
66 ATT-CCATGTCTAAGACCCAACCAGACAGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGAG
* * *
20011316 GGATCGGGTCGGTCCCCGGCTTACGCATTC
130 GGATCGGGCCGATCCCCGGCTTACGCATTA
* * ** * *
20011346 TGTCTCTCC-GACTGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
1 TGCCTCTCCGGTC-GGCTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
20011410 CATTCCATGTCTAAG
65 CATTCCATGTCTAAG
20011425 CATACAGAGT
Statistics
Matches: 194, Mismatches: 39, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
158 75 0.39
159 118 0.61
160 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
TGCCTCTCCGGTCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGACCCAACCAGACAGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGAGG
GATCGGGCCGATCCCCGGCTTACGCATTA
Found at i:20011428 original size:26 final size:26
Alignment explanation
Indices: 20011398--20011450 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20011388 GTTGGCTTAG
*
20011398 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
20011424 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
20011450 G
1 G
20011451 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:20011661 original size:12 final size:12
Alignment explanation
Indices: 20011644--20011674 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
20011634 TGAGGGTTGT
20011644 GGTAGCAGGACC
1 GGTAGCAGGACC
*
20011656 GGTAGCAGGATC
1 GGTAGCAGGACC
20011668 GGTAGCA
1 GGTAGCA
20011675 CGCAGAGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.42, T:0.13
Consensus pattern (12 bp):
GGTAGCAGGACC
Found at i:20011999 original size:26 final size:26
Alignment explanation
Indices: 20011963--20012015 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20011953 GTTGGCTTAG
20011963 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCGA-GTCTAA
20011989 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
20012015 G
1 G
20012016 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:20013076 original size:159 final size:158
Alignment explanation
Indices: 20012711--20013202 Score: 361
Period size: 159 Copynumber: 3.1 Consensus size: 158
20012701 CCCAGTCTAA
* * * ** * * * *
20012711 GCATAAAAAGTTCATTCCCAGTCTGAGATCGGACCGGA-CGGAGGTTTGTGACAGTAGGATCGGC
1 GCATACAAAGTTCATTCCCAATCTAAGATCATACCAGATC-GAGGATTGTGACAGCAGGATCGAC
* * *** * * * * * * *
20012775 AGCACGC-AGGGGGACCGGGTTGATCCCTGGCTTGCGCATTCTGCCTCT-CTGGCCGGCTGAGCA
65 AACACACAAGGGGGACCGGACCGATCCCCGACTTGCGCATTCTACCTCTAC-AGCTGGCTCAGCG
* * * ** *
20012838 CCCGTACACCCGTTTTGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * ** * * * * * *
20012868 GCATAGAGAGTTCATT-CCATGTCTAAGCCCCA-GCCGGACCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACAAAGTTCATTCCCA-ATCTAAG-ATCATACCAGATCGAGGATTGTGACAGCAGGATC-G
* * * *
20012930 ACAACATACAGAGGGGGACTTGG-CCGATCCCCGACTTGCGCATTAC-GCCTCTCCAGCTGGCTC
63 ACAACACACA-AGGGGGAC-CGGACCGATCCCCGACTTGCGCATT-CTACCTCTACAGCTGGCTC
*
20012993 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAG
125 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
20013027 GCATACAAAGTTCATTCCCAATCTAAGATCATACCAGATCGAGGATTGTGACAGCAGGATCGATA
1 GCATACAAAGTTCATTCCCAATCTAAGATCATACCAGATCGAGGATTGTGACAGCAGGATCGACA
* * ** * * ** *
20013092 GCACGCAAGGGGGACCGGATTGGTCCCCGACTTGCGCCTTCTACCTCTATGGCTGGCTGAGCGCC
66 ACACACAAGGGGGACCGGACCGATCCCCGACTTGCGCATTCTACCTCTACAGCTGGCTCAGCGCC
* *
20013157 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
20013185 GCATACAAAGTTCATTCC
1 GCATACAAAGTTCATTCC
20013203 ATGCCTAAGC
Statistics
Matches: 264, Mismatches: 57, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 4 0.02
157 49 0.19
158 90 0.34
159 113 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACAAAGTTCATTCCCAATCTAAGATCATACCAGATCGAGGATTGTGACAGCAGGATCGACA
ACACACAAGGGGGACCGGACCGATCCCCGACTTGCGCATTCTACCTCTACAGCTGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:20013785 original size:318 final size:315
Alignment explanation
Indices: 20013297--20013876 Score: 759
Period size: 318 Copynumber: 1.8 Consensus size: 315
20013287 AGCACATAGA
* * * * ** *
20013297 GACCGGGCCGATCCCCGACTTGCGCATTCTCCCTCTCCGGCCGGCTAAGTGTCCGTACGCCGTTT
1 GACCGGGACGATCCCCGACTTACGCATTCTCCCTCTCCGGCCGACTAAGTGCCCACACGCCATTT
* * *
20013362 CATGGGTTGGTTTGGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGAAAATAGTTGTGG
66 CATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGAAAAGAGTTGTGG
* * * *
20013427 TAACGGGACTGGCAGCACGCAGAGAGGGACCGGGCCGATCCTTA-GCTTACGCATTATGCCTCTC
131 TAACGGGACCGACAGCACGCAGAGAGGGACCGGACCGATCC-AAGGCTTACGCATTATGCCTCTC
* * * * * * *
20013491 TGG-TTGGCTCAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCCTTCCTA
195 CGGCCTGCCT-AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-A
20013555 GTCTAAAATTGGACCGGACCAAGGGTTGCGACTGCAAGATCGACAACACGAAGGGGTG
258 GTCTAAAATTGGACCGGACCAAGGGTTGCGACTGCAAGATCGACAACACGAAGGGGTG
* * * * *
20013613 GACCGGGATGATCTCCGACTTACTCATTCTGCCTCTCCGGCCGACTGAGTGCCCACACGCCCATT
1 GACCGGGACGATCCCCGACTTACGCATTCTCCCTCTCCGGCCGACTAAGTGCCCACACG-CCATT
* * * ** ** *
20013678 TCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGT
65 TCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGA-AAAGAGTTGT
* * *
20013743 GGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCAAGGCTTGCGCATTATGCCTCT
129 GGTAACGGGACCGACAGCACGCAGAGAGGGACCGGACCGATCCAAGGCTTACGCATTATGCCTCT
*
20013808 CCGGCCTGCCTAGCACCCTCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAG
194 CCGGCCTGCCTAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAG
20013873 TCTA
259 TCTA
20013877 CGAATAGATC
Statistics
Matches: 222, Mismatches: 38, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
316 48 0.22
317 58 0.26
318 112 0.50
319 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (315 bp):
GACCGGGACGATCCCCGACTTACGCATTCTCCCTCTCCGGCCGACTAAGTGCCCACACGCCATTT
CATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGAAAAGAGTTGTGG
TAACGGGACCGACAGCACGCAGAGAGGGACCGGACCGATCCAAGGCTTACGCATTATGCCTCTCC
GGCCTGCCTAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTC
TAAAATTGGACCGGACCAAGGGTTGCGACTGCAAGATCGACAACACGAAGGGGTG
Found at i:20014250 original size:171 final size:171
Alignment explanation
Indices: 20013952--20014263 Score: 425
Period size: 171 Copynumber: 1.8 Consensus size: 171
20013942 CCCTGACTTA
* * *
20013952 CGCATTCTGCCTCTTCGTCTGGTTGAGCGCCCGCACGCTTCTTTCATGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTTCTTTCATGGGTTGGCTTAGGCATAC
* * * * *
20014017 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGATGGTTGCGGTAGTAAGACTAGCAGCAGGA
66 AGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGCGGTAGCAAGACCAGCAGCAGGA
*
20014082 TCGGCAGCACGCAGGGAGGGACCGGGCTGATCCCCGGCTTG
131 TCAGCAGCACGCAGGGAGGGACCGGGCTGATCCCCGGCTTG
* *
20014123 CGCATTCTGCCTCTTTGACCGGCTGAGCGCCCGTACGC-TCATTTCATGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTTC-TTTCATGGGTTGGCTTAGGCATA
* * * *
20014187 CAGAGTTCATT-CCATGTCTAAGCACCAG-CCGGATCAAGGGTTGTGGCT-GCAGGACCGGCAGC
65 CAGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTGCGG-TAGCAAGACCAGCAGC
20014249 AGGATCAGCAGCACG
127 AGGATCAGCAGCACG
20014264 TAAAGGGGGA
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
170 5 0.04
171 112 0.92
172 5 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (171 bp):
CGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTTCTTTCATGGGTTGGCTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGCGGTAGCAAGACCAGCAGCAGGA
TCAGCAGCACGCAGGGAGGGACCGGGCTGATCCCCGGCTTG
Found at i:20014307 original size:171 final size:174
Alignment explanation
Indices: 20013975--20014394 Score: 417
Period size: 171 Copynumber: 2.4 Consensus size: 174
20013965 TTCGTCTGGT
20013975 TGAGCGCCCGCACGCTTCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-
1 TGAGCGCCCGCACGC-TCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGC
* * * * * * * *
20014038 ATCAGACCGGACCGATGGTTGCGGTAGTAAGACTAGCAGCAGGATCGGCAGCACGCAGGGAGGGA
64 ACCAGACCGGACCAAGGGTTGCGGTAGCAAGACCAGCAGCAGGATCAGCAGCACGAAAGGAGGGA
* * * *
20014103 CCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCT-TTGA-C-CGGC
129 CCGGGCTGATCCCCGGCTCGCACATTATGCCTCTACTGACCTCGGC
*
20014146 TGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTC-TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
* * * *
20014211 CCAG-CCGGATCAAGGGTTGTGGCT-GCAGGACCGGCAGCAGGATCAGCAGCACGTAAAGG-GGG
65 CCAGACCGGACCAAGGGTTGCGG-TAGCAAGACCAGCAGCAGGATCAGCAGCACG-AAAGGAGGG
* **
20014273 ATCGGGCT-ACTCTTCGGCTCGCACATTATGCCTCTCCAACTGACCTCTTTGGTCGGC
128 ACCGGGCTGA-TCCCCGGCTCGCACATTATGCCTCT---ACTGA-C-C-----TCGGC
* * *
20014330 TGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGGCTAAGCA
1 TGAGCGCCCGCACGCTC-TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
20014395 TACGGAGTTC
Statistics
Matches: 205, Mismatches: 25, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
170 6 0.03
171 123 0.60
172 8 0.04
175 3 0.01
178 1 0.00
184 64 0.31
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (174 bp):
TGAGCGCCCGCACGCTCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAC
CAGACCGGACCAAGGGTTGCGGTAGCAAGACCAGCAGCAGGATCAGCAGCACGAAAGGAGGGACC
GGGCTGATCCCCGGCTCGCACATTATGCCTCTACTGACCTCGGC
Found at i:20014735 original size:26 final size:26
Alignment explanation
Indices: 20014699--20014751 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20014689 GTTGGCTGAG
20014699 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20014725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20014751 G
1 G
20014752 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20015037 original size:173 final size:167
Alignment explanation
Indices: 20014849--20015357 Score: 455
Period size: 159 Copynumber: 3.0 Consensus size: 167
20014839 CTACCTCTTT
* * * *
20014849 GACCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCAATTT
1 GACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAA-TT
*
20014914 CTAAGCCCCAACCAGACCGAGAGGGTTGTGGCAACAGGATCGGCAGCGGGATCGGTAGCACGCAG
65 CTAAGCCCCAACCAGACC--GAGGGTTGT-GC--CAGGATCGGCAGCAGGATCGGTAGCACGCAG
*
20014979 AGGGGGACCGGGCTGATCCCTGGCTTGCACATTATGCCTCTCC
125 AGGGGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCC
* * * * *
20015022 GACCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAA-
1 GACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT--CAAT
* * * * * *
20015086 TCTAAG-ACCAGATCAGACCGAGGG-T-T------AT-GGTAGCAAGATCGATAGCACGCAGGGG
64 TCTAAGCCCCA-ACCAGACCGAGGGTTGTGCCAGGATCGGCAGCAGGATCGGTAGCACGCAGAGG
* * * * *
20015141 GGGACCTGGCCGAACCCCGGCTTGCACATTCTGCCTCTCT
128 GGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCC
** * * * *
20015181 GTTCGACTGAGCGCTCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
1 GACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAAT-T
* * * * * * *
20015246 CTAAGCCCCAGCCGGACTGAGGGTTGTGTCGCAGGACCGGCAGCAGGATCAGCAGCATGCAGAGG
65 CTAAGCCCCAACCAGACCGAGGGTTGTG-C-CAGGATCGGCAGCAGGATCGGTAGCACGCAGAGG
* * * * * *
20015311 GGGACCGAGTTGATCCCCGTCTTACACATTGTGCCTCTTC
128 GGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCC
*
20015351 GATCGAC
1 GACCGAC
20015358 CTCTACGACC
Statistics
Matches: 262, Mismatches: 57, Indels: 37
0.74 0.16 0.10
Matches are distributed among these distances:
157 2 0.01
159 120 0.46
160 6 0.02
161 1 0.00
169 2 0.01
170 57 0.22
171 5 0.02
172 3 0.01
173 63 0.24
175 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (167 bp):
GACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATTC
TAAGCCCCAACCAGACCGAGGGTTGTGCCAGGATCGGCAGCAGGATCGGTAGCACGCAGAGGGGG
ACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCC
Found at i:20015960 original size:26 final size:26
Alignment explanation
Indices: 20015909--20015961 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20015899 GTTGGCTTAG
*
20015909 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
20015935 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
20015961 G
1 G
20015962 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:20018658 original size:26 final size:26
Alignment explanation
Indices: 20018621--20018678 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
20018611 CGTGGGTTGA
20018621 CTAAGGCATACGGAGTTCATCCCTAGT
1 CTAA-GCATACGGAGTTCATCCCTAGT
*
20018648 CTAAGCATACGGAGTTCATTCCTAGT
1 CTAAGCATACGGAGTTCATCCCTAGT
20018674 CTAAG
1 CTAAG
20018679 ATTGGACCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATCCCTAGT
Found at i:20018940 original size:159 final size:158
Alignment explanation
Indices: 20018687--20018996 Score: 410
Period size: 159 Copynumber: 2.0 Consensus size: 158
20018677 AGATTGGACC
*
20018687 GGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAAGGGGGACCGAACCGATCCCCGGCTTAC
1 GGACCGAGGGTTGTGGCAGCAAGACCGACAGCACGCAAGGGGGACCGAACCGATCCCCGGCTTAC
* * * *
20018752 GCATTTTGCCTCTCCGGCCGGTTGAGCGCCTGCACAC-CT-GTTACGTGGGTTTGCTTAGGCATA
66 GCATTATGCCTCTCCGACCGGTTGAGCGCC--CACACGCTCATTACGTGGGTTGGCTTAGGCATA
*
20018815 AGGAGTTCATTTCATGTCTAAGCCCCAGTT
129 AGGAGTTCATTCCATGTCTAAGCCCCAGTT
** * * * *
20018845 GGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCTGAGGGGGACC-AGGCCGATCCTCGGCTT
1 GGACCGAGGGTTGTGGCAGCAAGACCGACAGCACGC-AAGGGGGACCGA-ACCGATCCCCGGCTT
* * *
20018909 GCGCATTATGCCTCTCCGATCGGTTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATA
64 ACGCATTATGCCTCTCCGACCGGTTGAGCGCCCACACGCTCATTACGTGGGTTGGCTTAGGCATA
* *
20018974 CGGAGTTCATTCCATTTCTAAGC
129 AGGAGTTCATTCCATGTCTAAGC
20018997 ATACGGAGTT
Statistics
Matches: 131, Mismatches: 17, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
157 5 0.04
158 35 0.27
159 91 0.69
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GGACCGAGGGTTGTGGCAGCAAGACCGACAGCACGCAAGGGGGACCGAACCGATCCCCGGCTTAC
GCATTATGCCTCTCCGACCGGTTGAGCGCCCACACGCTCATTACGTGGGTTGGCTTAGGCATAAG
GAGTTCATTCCATGTCTAAGCCCCAGTT
Found at i:20019019 original size:26 final size:26
Alignment explanation
Indices: 20018969--20019020 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20018959 GTTGGCTTAG
*
20018969 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20018995 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20019021 TAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20019709 original size:26 final size:26
Alignment explanation
Indices: 20019673--20019725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20019663 GTTGACTTAG
20019673 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20019699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20019725 G
1 G
20019726 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20020054 original size:158 final size:155
Alignment explanation
Indices: 20019696--20020198 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 155
20019686 ATCCCCAGTC
* *
20019696 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCAGAATAG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC-GGACCGAGGGTTGTGGCAGCAGGATCG
* *
20019761 GCAGCACGCAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGA-CTGGCTGAGC
65 ACAGCACGCAGGGGGATC-GGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATC-GGCTGAGC
20019825 GCCTGCACGC-CCGTTTCGTGGGTTGGCT
128 GCCTGCACGCTCC-TTTCGTGGGTTGGCT
* * ** ** * * * *
20019853 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACGGGACC
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAAACGGACCGAGGGTTGTGGCAGCAGGATC
* * *
20019917 GATAGCACGCAGAGAGGGATCGAGTCGATCCCCAGCTTGCACATTATGCCTCTCCGATCGG-TCA
64 GACAGCACGCAG-G-GGGATCG-GTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTGA
* *
20019981 GCGCCTGCACACTCCTTTCGTGGGTTGACT
126 GCGCCTGCACGCTCCTTTCGTGGGTTGGCT
* * ** * *
20020011 TAAGCATACAGAGTTCATTCCCAATCTAAGATTGGAACGGACCGAGGGTTGCGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCAAACGGACCGAGGGTTGTGGCAGCAGGATCG
* * * ** *
20020076 ACAGCACACAGGGGGGACCGGCCCGATCCCTGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGC
65 ACAGCACGCA-GGGGGATCGG-TCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTGAGC
* * * **
20020141 GCCCGTACGCTCGTTTTATGGGTTGGCT
128 GCCTGCACGCTCCTTTCGTGGGTTGGCT
*
20020169 TAGGCATACGGAGTTCATT-CCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG
20020199 CATACGAGTT
Statistics
Matches: 279, Mismatches: 54, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.01
157 95 0.34
158 133 0.48
159 46 0.16
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACGGACCGAGGGTTGTGGCAGCAGGATCGA
CAGCACGCAGGGGGATCGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCC
TGCACGCTCCTTTCGTGGGTTGGCT
Found at i:20020210 original size:25 final size:26
Alignment explanation
Indices: 20020172--20020223 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
20020162 GTTGGCTTAG
20020172 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20020198 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20020223 G
1 G
20020224 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20020587 original size:171 final size:168
Alignment explanation
Indices: 20020198--20020590 Score: 446
Period size: 171 Copynumber: 2.3 Consensus size: 168
20020188 CCATGTCTAA
** ** * *
20020198 GCATACGAGTTCATTCCCAGTCTAAGATCGGACTAGACTAAGGGTTGTGACAGCAGGACCAGCAG
1 GCATACGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAACAGGACCAGCAA
* * * *
20020263 CAGTATCGACAGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCC
65 CAGGATCGACAGCACGTAGGGGAGATCCGGTCGATCCTCGGCTTACGCATTATGCCTCTCCGGCC
* *
20020328 GGCTGAGCGCCCGCACGCTAATTTCATGGGTTGGCTTAG
130 GGCTCAGCGCCCGCACGCTAATTTCATGGGTTGACTTAG
* * ** * * **
20020367 GCATACGGAGTTCATACCATGTCTAAG-CCCCAGCCGAATCGAGGGTTGTGGTAACAGGACCAGC
1 GCATAC-GAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGACAACAGGACCAGC
* * * *
20020431 AACGGGATTGACAGCACGTAGAGGGAGATCCGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCG
63 AACAGGATCGACAGCACGTAG-GGGAGATCCGGTCGATCCTCGGCTTACGCATTATGCCTCTCCG
* ** * *
20020496 GTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 GCCGGCTCAGCGCCCGCACGCTAATTTCATGGGTTGACTTAG
*
20020538 GCATACGATGTTCATTCCTAGTCTAAGATCGGACCGGACCGATGGTTGTGACA
1 GCATACGA-GTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGTGACA
20020591 GTAGGATTGA
Statistics
Matches: 179, Mismatches: 38, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
169 11 0.06
170 56 0.31
171 109 0.61
172 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (168 bp):
GCATACGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAACAGGACCAGCAAC
AGGATCGACAGCACGTAGGGGAGATCCGGTCGATCCTCGGCTTACGCATTATGCCTCTCCGGCCG
GCTCAGCGCCCGCACGCTAATTTCATGGGTTGACTTAG
Found at i:20020697 original size:524 final size:499
Alignment explanation
Indices: 20019644--20020750 Score: 1292
Period size: 524 Copynumber: 2.2 Consensus size: 499
20019634 GGCTGAGTGT
* *
20019644 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGA
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGA
* * *
20019708 GTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCAGAATAGGCAGCACGCAGG
65 GTTCATTCCCAGTCTAAGATCAAACTAGACCAAGGGTTGTGGCAGCAGAATAGACAGCACGCAGG
* * * **
20019773 GGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCTGCACGCCCG
130 GGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCAA
* * *
20019838 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
195 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCCAGACCGAGGGTT
20019903 GTGGCAACGGGACCGATAGCACGCAGAGAGGGATCGAGTCGATCCCCAGCTTGCACATTATGCCT
260 GTGGCAACGGGACCGATAGCACGCAGAGAGGGATCGAGTCGATCCCCAGCTTGCACATTATGCCT
*
20019968 CTCCGATCGGTCAGCGCCTGCACACTCCTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCC
325 CTCCGATCGGTCAGCGCCCGCACACTCCTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCC
* ** *
20020033 AATCTAAGATTGGAACGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGGGACCGGC
390 AATCTAAGATCGGAACGGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGACCGGC
* * * * ** * *
20020098 CCGATCCCTGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGC
455 CCGATCCCTGACTTACGCATTCTGCCTCTCCGACCAACTGAACAC
* **
20020143 CCGTACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-GAG
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
** *
20020207 TTCATTCCCAGTCTAAGATCGGACTAGACTAAGGGTTGTGACAGCAGGACCAGCAGCAGTATCGA
66 TTCATTCCCAGTCTAAGATCAAACTAGACCAAGGGTTGTG---GCA-G--CAG-A--A-TA--GA
* * * *
20020272 CAGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCG
119 CAGCACGCA-GGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
*
20020337 CCCGCACGCTAATTTCATGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCC
183 CCCGCACGCCAATTTCATGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCC
* * * *
20020402 -GAATCGAGGGTTGTGGTAACAGGACCAGCA-ACGGGATTGACAGCACGTAGAGGGAGATCCG-G
248 AG-ACCGAGGGTTGTGGCAACGGGACC-G-ATA---G---CAC-GCA-G-AGA-GG-GAT-CGAG
* * * * * * *
20020464 TCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGG
298 TCGATCCCCAGCTTGCACATTATGCCTCTCCGATCGG-TCAGCGCCCGCACACTCCTTTCGTGGG
* * * * * * *
20020529 TTGACTTATGCATAC-GATGTTCATTCCTAGTCTAAGATCGGACCGGACCGATGGTTGTGACAGT
362 TTGACTTAAGCATACAGA-GTTCATTCCCAATCTAAGATCGGAACGGACCGAGGGTTGCGACAGC
* * * * * ** *
20020593 AGGATTGATAGCACATAGATGGGACTGGGTCGAT-CCTCGACTTACGCATTCTGCCTCTCCGGCC
426 AGGATCGACAGCACACAGAGGGGACCGGCCCGATCCCT-GACTTACGCATTCTGCCTCTCCGACC
20020657 AACTGAACAC
490 AACTGAACAC
*
20020667 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
*
20020732 CTCATTCCCAGTCTAAGAT
66 TTCATTCCCAGTCTAAGAT
20020751 TTTGAGCCAC
Statistics
Matches: 507, Mismatches: 68, Indels: 40
0.82 0.11 0.07
Matches are distributed among these distances:
498 41 0.08
499 52 0.10
501 3 0.01
502 1 0.00
504 3 0.01
505 1 0.00
507 1 0.00
508 2 0.00
510 10 0.02
511 129 0.25
512 2 0.00
513 1 0.00
515 1 0.00
518 2 0.00
519 3 0.01
520 1 0.00
521 3 0.01
522 2 0.00
523 41 0.08
524 187 0.37
525 21 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (499 bp):
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAAACTAGACCAAGGGTTGTGGCAGCAGAATAGACAGCACGCAGGG
GGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCAAT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
TGGCAACGGGACCGATAGCACGCAGAGAGGGATCGAGTCGATCCCCAGCTTGCACATTATGCCTC
TCCGATCGGTCAGCGCCCGCACACTCCTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCA
ATCTAAGATCGGAACGGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGACCGGCC
CGATCCCTGACTTACGCATTCTGCCTCTCCGACCAACTGAACAC
Found at i:20020745 original size:26 final size:26
Alignment explanation
Indices: 20020696--20020748 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20020686 GTTGGCTTAG
*
20020696 GCATACGGAGTTCAATCCATGTCTAA
1 GCATACGGAGCTCAATCCATGTCTAA
*
20020722 GCATACGGAGCTCATTCCCA-GTCTAA
1 GCATACGGAGCTCAAT-CCATGTCTAA
20020748 G
1 G
20020749 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCAATCCATGTCTAA
Found at i:20021903 original size:158 final size:156
Alignment explanation
Indices: 20021446--20021944 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 156
20021436 CAGTCTAAGG
* * * *
20021446 ATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGAACC-AGGGTTGCGATAGTAGGATAGGTAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCG-ACCGAGGGTTACGATAGCAGGATAGATAG
* * * * * *
20021509 CACGTAGGGGGGATCGGGGT-GAT-CCCTGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
64 CACGCAGGGGGGA-CCGGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTCAGGCCGGCTGAGCGC
* * *
20021572 CTGCATGCC-CGTTTCATGGATTGGCTTAGGT
127 CCGC-T-CCTCGTTTCATGGGTTGGCTTAGGC
* * ** * * * *
20021603 ATAGGGAGTTCATTCCATCTCTAAGCCCCAG-CCGGACCGAGGGTTATGGTAGCGGGATCGATAG
1 ATACGGAGTTCATTCCATGTCTAAG-ATCAGACC-GACCGAGGGTTACGATAGCAGGATAGATAG
* * * * * * ** *
20021667 CACGCGGAGGGGGACCGAGTCGATCCCCGGTTTGCGCATTATGCCTCTCTGGAAGGCTCAGCGCC
64 CACGCAG-GGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCAGGCCGGCTGAGCGCC
* * *
20021732 CGCACGCTCGTTTCGTGGGTTGACTTAGGC
128 CGCTC-CTCGTTTCATGGGTTGGCTTAGGC
* * * *
20021762 ATACGCAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATTGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACC-GACCGAGGGTTACGATAGCAGGATAGATAG
* * *
20021826 CACGCAGGGGGGAGCGGGTCGATCCCCAGCATACGCATTCTGCCTCTCAGGCCGGCTGAGCGCCC
64 CACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCAGGCCGGCTGAGCGCCC
20021891 GCTCACTCGTTTCATGGGTTGGCTTAGGC
129 GCTC-CTCGTTTCATGGGTTGGCTTAGGC
20021920 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
20021945 CATACGGAGT
Statistics
Matches: 270, Mismatches: 60, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 27 0.10
158 127 0.47
159 106 0.39
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTACGATAGCAGGATAGATAGCA
CGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCAGGCCGGCTGAGCGCCCGC
TCCTCGTTTCATGGGTTGGCTTAGGC
Found at i:20021948 original size:26 final size:26
Alignment explanation
Indices: 20021918--20021970 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20021908 GTTGGCTTAG
20021918 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20021944 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20021970 G
1 G
20021971 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20022315 original size:26 final size:26
Alignment explanation
Indices: 20022285--20022334 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20022275 GTGGACTTAG
*
20022285 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
20022311 GCATATAGAGTTCATTCCCAATCT
1 GCATACAGAGTTCATCCCCAATCT
20022335 TAGATCGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20022665 original size:26 final size:26
Alignment explanation
Indices: 20022628--20022680 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20022618 GTTGACTTAT
20022628 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20022654 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20022680 G
1 G
20022681 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20022685 original size:343 final size:343
Alignment explanation
Indices: 20021675--20022995 Score: 1190
Period size: 343 Copynumber: 3.8 Consensus size: 343
20021665 AGCACGCGGA
* * * * ** * *
20021675 GGGGGACCGAGTCGATCCCCGGTTTGCGCATTATGCCTCTCTGGAAGGCTCAGCGCCCGCACGCT
1 GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCC
* * * * ** * *
20021740 CGTTTCGTGGGTTGACTTAGGCATACGCAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAG
66 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAG
** * * ** * * * * * ** * *
20021803 GGTTACGACAGCAGGATTGACAGCACGC-AGGGGGGAGCGGGTCGATCCCCAGCATACGCATTCT
129 GGTTGTGGCAGCGGGACCGACGGCACACAAAGGGGGATCGGGCCGATCCCTGGCTTACGCATTAT
* * * * * *
20021867 GCCTC-TCAGGCCGGCTGAGCGCCCGCTCACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
194 GCCTCTTC-GGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTC
* * * * *
20021931 AT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATTGAAGGTTGTGG
258 ATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG-AGG--GTTG
*
20021995 CAGTAGGACCAGCAATAGGATTGACAGCACGTAG
319 C-----GA-CAGC-A-A-GATCGACAGCACGTAG
* * * * * * * *
20022029 GGGGGATCGAGTCGATCCCCGGCTTGTGTATTTTGCCTCTCCGGCCGGCTGAGCACCCGCACGCT
1 GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCC
* ** * *
20022094 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTTTAAGCCCCAGCCGGACCGAGGG
66 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
** * * * * *
20022159 TTGTGGCAGTAGGACTGATAGCGGGATCGACAGCATGCCGAAGGCGATCGGGCTGATCCCCGGCT
131 TTGTGGCAGCGGGACCG--A-CGGCA-C-ACA--AAG--G--GG-GATCGGGCCGATCCCTGGCT
* * * * * *
20022224 TACGCACTATGCCTCTCCGG-CTGGCTGAGTGCCCGCACGCACGTTTCATGGGTGGACTTAGGCA
184 TACGCATTATGCCTCTTCGGTC-GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * ** * *
20022288 TACGGAGTTCATCCCCAATCTAAGCATATAGAGTTCATTCCCAATCTTAGATCGGACCGGATCGA
248 TACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
**
20022353 GGGTTGCGACAGCAAGATCGACAGCACACAG
313 GGGTTGCGACAGCAAGATCGACAGCACGTAG
* * * * * *
20022384 GGGGGACCGGGCCGATCCCTGGCTTACGCGTTCTGCCTCTCCGGCTGGCTGAGTGCCCGCATGCC
1 GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCC
** *
20022449 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAAATCGAGGG
66 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
* *
20022514 TTGTGGTAGCGGGACCGACGGCACACAAAGGGGGATCGGGCCAATCCCTGGCTTACGCATTATGC
131 TTGTGGCAGCGGGACCGACGGCACACAAAGGGGGATCGGGCCGATCCCTGGCTTACGCATTATGC
* * * *
20022579 CTCTTCGGTCAGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATC
196 CTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATC
* * *
20022644 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCTACAGC
261 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGC
20022709 -AGAATCGACAGCACGTA-
326 AAG-ATCGACAGCACGTAG
* * * * * * *
20022726 GGGGGACCGAACCGATCCCCAGCTTGCACATTCTGCCTCTCTGG-TCGGTTGAGCGCCCGTACGG
1 GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GGCTGAGCGCCCGCACGC
*
20022790 CCGTTTCATGGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
65 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
* * * *** * * *
20022855 ATTGTGGCAGCGAGATCGGTAGCACGCAAA-GGGGATTGGGTCGATCCTCT-GCTTACGCATTAT
130 GTTGTGGCAGCGGGACCGACGGCACACAAAGGGGGATCGGGCCGATCC-CTGGCTTACGCATTAT
* * * * * *
20022918 ACCTCTTCGGTTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTT-GCACATACGAAGTTC
194 GCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG-GCATACGAAGTTC
*
20022982 ATTCCCAGTCTAAG
258 ATCCCCAGTCTAAG
20022996 ATCGGACAGG
Statistics
Matches: 802, Mismatches: 142, Indels: 59
0.80 0.14 0.06
Matches are distributed among these distances:
341 96 0.12
342 136 0.17
343 150 0.19
344 3 0.00
346 1 0.00
348 2 0.00
350 3 0.00
351 1 0.00
352 4 0.00
353 4 0.00
354 117 0.15
355 137 0.17
356 2 0.00
357 4 0.00
358 5 0.01
359 3 0.00
362 2 0.00
364 5 0.01
366 6 0.01
367 117 0.15
368 4 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (343 bp):
GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCC
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
TTGTGGCAGCGGGACCGACGGCACACAAAGGGGGATCGGGCCGATCCCTGGCTTACGCATTATGC
CTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATC
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGC
AAGATCGACAGCACGTAG
Found at i:20023157 original size:26 final size:26
Alignment explanation
Indices: 20023127--20023179 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20023117 GTTGGCTTAG
20023127 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
20023153 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20023179 G
1 G
20023180 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20029634 original size:26 final size:26
Alignment explanation
Indices: 20029597--20029649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20029587 GTTGGCTTAG
20029597 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
*
20029623 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20029649 G
1 G
20029650 ATTAGACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20030012 original size:26 final size:26
Alignment explanation
Indices: 20029976--20030027 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20029966 GTTGACTTAG
*
20029976 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* *
20030002 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
20030028 TTGGATTGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:20030352 original size:26 final size:26
Alignment explanation
Indices: 20030316--20030368 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20030306 GTTGGCTTAG
*
20030316 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20030342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20030368 G
1 G
20030369 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20031059 original size:26 final size:26
Alignment explanation
Indices: 20031029--20031081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20031019 GTTGACTTAG
*
20031029 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20031055 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20031081 G
1 G
20031082 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20031934 original size:26 final size:26
Alignment explanation
Indices: 20031897--20031949 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20031887 GTTGGCTTAG
20031897 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20031923 GCATAC-ACAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
20031949 G
1 G
20031950 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20032595 original size:158 final size:159
Alignment explanation
Indices: 20032327--20032840 Score: 453
Period size: 158 Copynumber: 3.3 Consensus size: 159
20032317 GGTCCGAACT
* * * * * * * * *
20032327 GAGGGTTGTAGCAGTAGGATCGGTAGCATGCAG-GGGGGACCGGGCCGATCCTCGGCTTACGCAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCAT
* * * * * * * * * * * **
20032391 TCTACCTCTCCTATCGACTAAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TATGCCCCTCCGATCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGT
* * *
20032456 TCATTCCTTGTCTATGCCCCTGCCGGATC
131 TCATTCCTTGTCTAAGCCCCAGCCGGACC
* * *
20032485 GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCGAGCCGA-CCCCAGCTTGCGTAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCAT
* * * * *
20032549 TATGCCCCTCCGGTCGGCTTAGTGCCCGGACACTCATTTCATGGGTTGACTTAGGCATACAGAGT
66 TATGCCCCTCCGATCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGT
* ** *
20032614 TCATT-CTAGTCTAAG-ATCAGATCGGACC
131 TCATTCCTTGTCTAAGCCCCAG-CCGGACC
** * * * ** *
20032642 GAGGGTTACGACAGCAGGATCGACAGCACGCAG-GGGGGACCGCGCCAATCCCTGGCTTGTGCAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCAT
* * * * * * **
20032706 TCTGCCTCTTCGATTGGCTGAGCGTCTGCACGTTCATTTCATGGGTTGGCTTAGGCATACAGAGT
66 TATGCCCCTCCGATCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGT
*
20032771 TCATTCCATGTCTAAGCCCCAGCCGGACC
131 TCATTCCTTGTCTAAGCCCCAGCCGGACC
* ** * *
20032800 GAGGGTTGTGGTAGTGGGACCGGCGGCACGCAGAGGGGGAC
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
20032841 TGGGCATTAT
Statistics
Matches: 278, Mismatches: 72, Indels: 11
0.77 0.20 0.03
Matches are distributed among these distances:
156 15 0.05
157 109 0.39
158 130 0.47
159 24 0.09
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (159 bp):
GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCAT
TATGCCCCTCCGATCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGT
TCATTCCTTGTCTAAGCCCCAGCCGGACC
Found at i:20034253 original size:112 final size:112
Alignment explanation
Indices: 20034054--20034263 Score: 271
Period size: 112 Copynumber: 1.9 Consensus size: 112
20034044 GATCGGGCCA
* * * * *
20034054 ATCCCCGGGTTGCGTATTATGCCTCTCTGACCGGCTTAGTGCCCGCACGCTCATTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTTAGCGCCCGCACGCTCATTTCATGGGTTG
* ** *
20034119 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGGTCG
66 ACTTACGCATACAAAGTACATT-CCATGTCTAAGATCAGATCAGGTCG
* * *
20034166 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGG-TTGAGCGCCCGCACGCTCGTTTCATGGGTT
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTT-AGCGCCCGCACGCTCATTTCATGGGTT
*
20034230 GGCTTACGCATACAAAGTACATTCCATGTCTAAG
65 GACTTACGCATACAAAGTACATTCCATGTCTAAG
20034264 CATACAGAGT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
111 5 0.06
112 78 0.94
ACGTcount: A:0.17, C:0.30, G:0.25, T:0.28
Consensus pattern (112 bp):
ATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTTAGCGCCCGCACGCTCATTTCATGGGTTG
ACTTACGCATACAAAGTACATTCCATGTCTAAGATCAGATCAGGTCG
Found at i:20034278 original size:26 final size:26
Alignment explanation
Indices: 20034237--20034289 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20034227 GTTGGCTTAC
20034237 GCATACAAAGTACATT-CCATGTCTAA
1 GCATACAAAGTACATTCCCA-GTCTAA
* *
20034263 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTACATTCCCAGTCTAA
20034289 G
1 G
20034290 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTACATTCCCAGTCTAA
Found at i:20034635 original size:26 final size:26
Alignment explanation
Indices: 20034605--20034657 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20034595 GTTGACTTAG
*
20034605 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
20034631 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20034657 G
1 G
20034658 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20034959 original size:159 final size:159
Alignment explanation
Indices: 20034762--20035134 Score: 405
Period size: 159 Copynumber: 2.3 Consensus size: 159
20034752 CTGAGCACCC
* * *
20034762 GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGA
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGA
* ** ** * * **
20034827 CCGAGGGTTGTGGCAGTGGGACCGGTAGCATACA-GAGGGGGACC-AGGCCGATCCTTGGCTTGC
66 CCAAGGGTTAAGGCAGCAGGACCGATAGCACACAGGA-GGGGACCGA-GCCGATCCCCGGCTTGC
* * *
20034890 GCATTATGCCTCT-TCGGCC-AGCTCAACGCCT
129 GCATGATGCCTCTCT-GGCCGA-CTCAACGACG
* ** * * ** * *
20034921 GCACGCTCGTTTCGTGGGTTAACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCGT
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGG
*
20034985 ACCAAGGGTTAAGGCAGCAGGATCGATAGCACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCG
65 ACCAAGGGTTAAGGCAGCAGGACCGATAGCACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCG
* * *
20035050 CATGCTGCCTCTCTGGCCGACTGAGCGACG
130 CATGATGCCTCTCTGGCCGACTCAACGACG
*
20035080 GCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20035135 ATACGGAGTT
Statistics
Matches: 173, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
158 3 0.02
159 162 0.94
160 8 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGA
CCAAGGGTTAAGGCAGCAGGACCGATAGCACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCGC
ATGATGCCTCTCTGGCCGACTCAACGACG
Found at i:20035143 original size:26 final size:26
Alignment explanation
Indices: 20035107--20035159 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20035097 GTTGGCTTAG
20035107 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20035133 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20035159 G
1 G
20035160 ATTTTGAGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20037068 original size:26 final size:26
Alignment explanation
Indices: 20037018--20037070 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20037008 GTTGGCTTAG
*
20037018 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
*
20037044 GCATACGGTGTTCATTTCCA-CTCTAA
1 GCATACGGAGTTCA-TTCCATCTCTAA
20037070 G
1 G
20037071 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCTCTAA
Found at i:20038286 original size:26 final size:26
Alignment explanation
Indices: 20038256--20038308 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20038246 GATGACTTAG
*
20038256 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
20038282 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20038308 G
1 G
20038309 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20038331 original size:367 final size:354
Alignment explanation
Indices: 20037821--20038475 Score: 819
Period size: 367 Copynumber: 1.8 Consensus size: 354
20037811 TGGGTCGATC
* * * ** * * *
20037821 CCCCGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCT
1 CCCCGCTTACGCATTATGCCTCTCCGACCGGTTGAGCACCCGCACGCTCATTTCATGGGATGACT
* * ***
20037886 TAGGCATACGGAGTTCATTACATGTCTAAGCATACAGAGTTCATTCCCAATTTAAGATTGGACCG
66 TAGGCATACGGAGTTCATCACATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAACCG
** * **
20037951 GACCGAAGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGTAGCACGCAGGGGGGGACCGGGCTGA
131 GACCGAAGG-T----T-GC--G---A-CAGCAGGATCGACAGCACGCA-AGGGGGACCGGGCCAA
* * * * *
20038016 TCCCCGGCTTGCATATTCTGCCTCTCCGATCGGCTGACCGACCACATGCTCATTTCATGGGTTGG
183 TCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTGACCGACCACACGCCCATTTCATGGGTTGG
* *
20038081 CTTAGGCATACGGAGTTCATTCCATG-GTAAGCGCCAGCCGCATCGAGGGTTGCTATAGCAGGAC
248 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGCATCGAGGGTTGCTATAGCAGGAC
20038145 CGACAGCGGGATCGACAGCACGCAGAGGGGGTTCGGGCTGAT
313 CGACAGCGGGATCGACAGCACGCAGAGGGGGTTCGGGCTGAT
*
20038187 CCCCGACTTACGCATTATGCCTCTCCGACCGGTTGAGCACCTGCACGCTCATTTCATGGGATGAC
1 CCCCG-CTTACGCATTATGCCTCTCCGACCGGTTGAGCACCCGCACGCTCATTTCATGGGATGAC
* *
20038252 TTAGGCATACGGAGTTCATC-CCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAAC
65 TTAGGCATACGGAGTTCATCACAT-GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAAC
* * * *
20038316 CGGATCGAGGGTTGCGACAGTAGGATCGACAGCACGCAAGGGGGATCGGGCCAATCCCCGGCTTG
129 CGGACCGAAGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTG
* * * * * *
20038381 CACATTTTGCCTCTCCGGCCAGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAG
194 CACATTCTGCCTCTCCGACCAGCTGACCGACCACACGCCCATTTCATGGGTTGGCTTAGGCATAC
20038446 GGAGTTCATTCCATGTCTAAGCCCCAGCCG
259 GGAGTTCATTCCATGTCTAAGCCCCAGCCG
20038476 GACCAAGGGT
Statistics
Matches: 248, Mismatches: 38, Indels: 17
0.82 0.13 0.06
Matches are distributed among these distances:
354 92 0.37
355 30 0.12
356 1 0.00
359 1 0.00
361 2 0.01
362 1 0.00
366 8 0.03
367 113 0.46
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (354 bp):
CCCCGCTTACGCATTATGCCTCTCCGACCGGTTGAGCACCCGCACGCTCATTTCATGGGATGACT
TAGGCATACGGAGTTCATCACATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAACCG
GACCGAAGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTGCA
CATTCTGCCTCTCCGACCAGCTGACCGACCACACGCCCATTTCATGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAGCCGCATCGAGGGTTGCTATAGCAGGACCGACAGCGGGATC
GACAGCACGCAGAGGGGGTTCGGGCTGAT
Found at i:20038941 original size:184 final size:187
Alignment explanation
Indices: 20038724--20039150 Score: 531
Period size: 184 Copynumber: 2.3 Consensus size: 187
20038714 GCCGGTTAAT
* *
20038724 GCCCGCATGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTACACATCTAAGCATACGG
1 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACACATCTAAGCATACGG
* * * *
20038789 AGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTACGACAGTAGG-AT-T-GGCAGCATG
66 AGTTCATTCCCAGTCTAAAATCAGACCGGATCGAGGGTTACGACAGTAGGCATATCGACAGCACG
*
20038851 CAGGGGGGACCGGGTCGA-TCCTCGGCTTGCACATTCTGCCTCTC-CGACCGACTGAGC
131 CAGGGGGGACCGGGTC-ATTCCTCGGCTTGCACATTCTACCTCTCACG-CCGACTGAGC
* **
20038908 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
1 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACACATCTAAGCATACGG
* * *
20038973 AGTTCATTCCCAGTCTAAAATCAGATCGGATCGAGGGTTGCGGCAGTAGGTCCATCAGCAGGATC
66 AGTTCATTCCCAGTCTAAAATCAGACCGGATCGAGGGTTACGACAGTAGG--CAT-------ATC
* * * *
20039038 GACAGCACGCAGGGGGGACTGGGTCATTCCTCGGCTTGCGCATTCTACCTCTCATGTCGACTGAG
122 GACAGCACGCAGGGGGGACCGGGTCATTCCTCGGCTTGCACATTCTACCTCTCACGCCGACTGAG
20039103 C
187 C
* * * *
20039104 GCCCGCACGCTCGTTTCTTGGGTTGGCTTAGGCTTAGGGAGTTCATT
1 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
20039151 CCATGTCTCA
Statistics
Matches: 208, Mismatches: 21, Indels: 16
0.85 0.09 0.07
Matches are distributed among these distances:
184 105 0.50
187 2 0.01
195 2 0.01
196 98 0.47
197 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (187 bp):
GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACACATCTAAGCATACGG
AGTTCATTCCCAGTCTAAAATCAGACCGGATCGAGGGTTACGACAGTAGGCATATCGACAGCACG
CAGGGGGGACCGGGTCATTCCTCGGCTTGCACATTCTACCTCTCACGCCGACTGAGC
Done.