Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 186 of 402
Found at i:20038968 original size:26 final size:26
Alignment explanation
Indices: 20038939--20038990 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20038929 GTTGGCTTAG
20038939 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20038965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20038991 AATCAGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20039858 original size:26 final size:26
Alignment explanation
Indices: 20039822--20039872 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20039812 TTGCTTAGGC
20039822 ATACGAAGTTCACTCC-ATGTCTAAGT
1 ATACGAAGTTCACTCCTA-GTCTAAGT
* *
20039848 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCACTCCTAGTCTAAG
20039873 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCACTCCTAGTCTAAGT
Found at i:20041651 original size:26 final size:26
Alignment explanation
Indices: 20041622--20041674 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20041612 GTTGACTATG
20041622 GCATACAGAGTT-CATCCCTAGTCTAA
1 GCATACAGAGTTCCATCCC-AGTCTAA
*
20041648 GCATACAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCCATCCCAGTCTAA
20041674 G
1 G
20041675 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCCATCCCAGTCTAA
Found at i:20042128 original size:159 final size:158
Alignment explanation
Indices: 20041756--20042309 Score: 434
Period size: 159 Copynumber: 3.5 Consensus size: 158
20041746 ATGCATTTTA
* * *
20041756 CCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGA-CGGATGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * *
20041821 TCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGA
65 TCCATGTCTAAGCCCCAGTCAGATCGAGGGTTATGGCAGCGGGACCGGCAGCACACAGAGAGGGA
* *
20041886 CCCAGCCAATCCCCGGCTTGCACATTCTG
130 CCCAGCCAATCCCCGACTTGCACATTATG
* * ** * * *
20041915 CCTTTCCGGCCAACTGAGTGCCCGCACACTCCTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCAT
1 CCTCTCCGACGGA-TGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * * * * * *
20041980 TCCATGTCTAAGCCCTAG-CCGGTCCGAGGGTTATGGCAGTGGGATCGGTAGCACACAGATAGGG
65 TCCATGTCTAAGCCCCAGTCAGAT-CGAGGGTTATGGCAGCGGGACCGGCAGCACACAGAGAGGG
* * *
20042044 A-TCAGGCCGATCCCCGACTTGCGCATTATG
129 ACCCA-GCCAATCCCCGACTTGCACATTATG
* * ** * **
20042074 CCTCTCCGACTGGATCAGCACCCGCACACTCGTTTCGTGGGTTGATTTAAGCATATTGAGTTCAT
1 CCTCTCCGAC-GGATGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
** * * *** * ** ** * * *
20042139 TCC-TAGTCTAAG-ATCAGACCAGACCGAGGGTTGCAGTAGTAGGATTGACAGCACGCAGGGA-G
65 TCCAT-GTCTAAGCCCCAG-TCAGATCGAGGGTTATGGCAGCGGGACCGGCAGCACACAGAGAGG
** * * * * * *
20042201 GACCGGGCCGATCCTCGGCTTACGCATTCTG
128 GACCCAGCCAATCCCCGACTTGCACATTATG
* * * ** * *
20042232 CCTCTCCGATCGGCTGAGCACCCACATGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGA-CGGATGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
*
20042297 TCCATATCTAAGC
65 TCCATGTCTAAGC
20042310 ATACAGAGTT
Statistics
Matches: 309, Mismatches: 75, Indels: 22
0.76 0.18 0.05
Matches are distributed among these distances:
158 94 0.30
159 212 0.69
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
CCTCTCCGACGGATGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT
CCATGTCTAAGCCCCAGTCAGATCGAGGGTTATGGCAGCGGGACCGGCAGCACACAGAGAGGGAC
CCAGCCAATCCCCGACTTGCACATTATG
Found at i:20042695 original size:26 final size:26
Alignment explanation
Indices: 20042659--20042711 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20042649 TGGGTTGACT
20042659 TAAGCATACGGAGATCATCCCCAGTC
1 TAAGCATACGGAGATCATCCCCAGTC
* *
20042685 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGATCATCCCCAGTC
20042711 T
1 T
20042712 CAGATCGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGATCATCCCCAGTC
Found at i:20043164 original size:158 final size:158
Alignment explanation
Indices: 20042902--20043189 Score: 377
Period size: 158 Copynumber: 1.8 Consensus size: 158
20042892 TGTGGCAGCG
* * * *
20042902 GGATCGACAGCACGTAGTGGGGGATCGGGCTGATCCCTGGCTTGCACATTATGCCTCTTCGACCG
1 GGATCGACAACACGCAGTGGGGGATCGGGCTGATCCCTGACTTGCACATTATGCCTCTTAGACCG
*
20042967 GTTCAGCGCCCGAACGCTTGTTTCGTGGGTCGACTTAGGCATACAGAGTTCATTCC-CAGTCTAA
66 GCTCAGCGCCCGAACGCTTGTTTCGTGGGTCGAC-TAGGCATACAGAGTTCATTCCACA-TCTAA
20043031 GATCAGACCGGACGGAGAGTTGTGGTAGTA
129 GATCAGACCGGACGGAGAGTTGTGGTAGTA
* * * *
20043061 GGATCGACAACACGCAG-GGGGGATCGGGTTGGTCCCTGACTTGCGCATTCTGCCTCTCTAG-CC
1 GGATCGACAACACGCAGTGGGGGATCGGGCTGATCCCTGACTTGCACATTATGCCTCT-TAGACC
* * * * *
20043124 GGCTGAGTGCCCGCACGCTTGTTTCGTGGCTTAGGA-TAGGCATACAGAGTTCATTCCACATCTA
65 GGCTCAGCGCCCGAACGCTTGTTTCGTGG-GT-CGACTAGGCATACAGAGTTCATTCCACATCTA
20043188 AG
128 AG
20043190 CATATGGAGT
Statistics
Matches: 111, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
158 89 0.80
159 20 0.18
160 2 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GGATCGACAACACGCAGTGGGGGATCGGGCTGATCCCTGACTTGCACATTATGCCTCTTAGACCG
GCTCAGCGCCCGAACGCTTGTTTCGTGGGTCGACTAGGCATACAGAGTTCATTCCACATCTAAGA
TCAGACCGGACGGAGAGTTGTGGTAGTA
Found at i:20043509 original size:710 final size:683
Alignment explanation
Indices: 20042592--20044426 Score: 2000
Period size: 684 Copynumber: 2.6 Consensus size: 683
20042582 CTGGCTTATG
* * ** * *
20042592 CATTATGCATCTCCGATCGACCTCTACAGTCGGCTGAAAG-TTCGCACGCTCATTTCGTGGGTTG
1 CATTCTGCCTCTCCGATCGACCTCTACAGTCGGCTGAGCGCCT-GCACGCTCGTTTCGTGGGTTG
* * *
20042656 ACTTAAGCATACGGAGATCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTCAGATCGGA
65 ACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * *
20042721 TCAGACCGAAGGTTGCTGCAGCAAGAT-TACAGCACACAGGGGAGACCAGGCCGATCCTCCGGCT
129 TCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCC-CCGGCT
* * * *
20042785 TGTGCATTCTGCCTCTCCGATTAGCTGAGTGCCCACATGCCCATTTCGTGGGTTGGCTTAAGCAT
193 TGTGCATTCTGCCTCTCCGATTGGCTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCAT
* *
20042850 AGGGAGTTCATTCCATGTCTATA-CCCCAGCCGGACTGATGGTTGTGGCAGCGGGATCGACAGCA
258 AGGGAGTTCATTCCATGTCTA-AGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCA
* * * * * *
20042914 CGTAGTGGGGGATCGGGCTGATCCCTGGCTTGCACATTATGCCTCTTCGACCGGTTCAGCGCCCG
322 CGCAGAGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGTTCAGCGCCCG
* *
20042979 AACGCTTGTTTCGTGGGTCGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
387 AACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC--A---GAC
* * *
20043044 GGAGAGTTGTGGTAGTAGGATCGACAACACGCAGGGGGGATCGGGTTGGTCCCTGACTTGCGCAT
447 GG-GA--T-T-G-A--AGG-TCG-CAACA-GCAGGGCGG-TC--CTCGG---CTGAC-T-CG--T
** **
20043109 TCTGCCTCTCTAG-CCGGCTGAGTGCCCGCACGCTTGTTTCGTGGCTTAGG-ATAGGCATACAGA
491 TCCACCTCTC-AGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGCTT-GGCATAGGCATACAGA
* *
20043172 GTTCATTCCACATCTAAGCATATGGAGTTCATTCCCAATCTAAGA-CTAGACCGGACCGAGGGTT
554 GTTCATTCCACATCTAAGCATACGAAGTTCATTCCCAATCTAAGATC-AGACCGGACCGAGGGTT
* * * *
20043236 GCGATAGCAGGACCAGCAGCAGGATC-GACAACACGCAAAGGGGACCGAGCCGATCCCCGGCTTG
618 ACGATACCAAGACCAGCAGCAGGATCAG-CAACACACAAAGGGGACCGAGCCGATCCCCGGCTTG
20043300 CA
682 CA
* * *
20043302 CATTCTGCCTCTCCGATCGACCTCTCCAGTTGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGA
1 CATTCTGCCTCTCCGATCGACCTCTACAGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGA
*
20043367 CTTAGGCATACGGAGTTCATCCCGAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
66 CTTAGGCATACGGAGTTCATCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * *
20043432 CGGACCGAGGGTTGCGGCAGTAGGATCGACAGTACGCAGGGGGGACCGGGCTGATCCCCGGCTTG
130 CGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
* * * *
20043497 TGCATTCTGCCTCTCCGACTGGCTTAGCACCCATACGCCCATTTCGTGGGTTGGCTTAGGCATAG
195 TGCATTCTGCCTCTCCGATTGGCTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAG
* *
20043562 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-TCGAGGGTTGTGGCAGCGGGACCGACAGCATG
260 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACT-GAGGGTTGTGGCAGCGGGACCGACAGCACG
* * * ** ** *
20043626 CAGAGGAGGATCGGACCGGTCCCCGACTTGTGCATTATGCCTCTCCGACTAGCTCAGCGCCCGAA
324 CAGAGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGTTCAGCGCCCGAA
* *
20043691 CGCTCGTTTCGTGGGTTGACTTAGGTATAC-GAAGTTCATTCCCAGTGC-AAGATCAGACTGGAT
389 CGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGT-CTAAGATCAGACGGGAT
* ** * * * *
20043754 TGAAGGTTGCAGTAGCAGGTCGGTCCTCGGCTTACTCGTTCCACCTCTCCGATCGGCTGAGTGCC
452 TGAAGGTCGCAACAGCAGGGCGGTCCTCGGCTGACTCGTTCCACCTCTCAGACCGGCTGAGTGCC
* * * ** **
20043819 CGCACGCTCATTTCGTGGGTTGGCTTCGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGT
517 CGCACGCTCATTTCGTGGCTTGGCATAGGCATACAGAGTTCATTCCACATCTAAGCATACGAAGT
* * * * *
20043884 TCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTACGGTACCAAGACCAGTAGTAGGATCAGC
582 TCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGATACCAAGACCAGCAGCAGGATCAGC
* ** * * * * *
20043949 AGCACACAGGGGGGATCGGGCCGATCCTCGTCTTGCG
647 AACACACAAAGGGGACCGAGCCGATCCCCGGCTTGCA
* * * *** * ** * *
20043986 CATTCTGCCTCTCTG-GCAGGCCTCTTTGGTCGGCAGAGCGCCCACACGCTCGTTTCGTGGCTTT
1 CATTCTGCCTCTCCGATC-GACCTCTACAGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTG
** *
20044050 ACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATTGGA
65 ACTTAGGCATACGGAGTTCATC-CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * ** *
20044115 TTGGATCGAGGGTTACAGCAGCAGGATCGACCGCACGCAGGGGGGATAGGGCCGATCCCTGGCTT
129 TCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTT
* * * *
20044180 GTGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
194 GTGCATTCTGCCTCTCCGATTGGCTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATA
* * * * * *
20044245 GGTAGTTCATTCCATGTCTAAGCCCTAGCCAGACTGAGGGTTGTGGTAGCGGGACCGGCAGTACG
259 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACG
** * ** * * *
20044310 CAGAGGGGGGCCGGGCCGATCCCCGACTTGCACATTTTGCCTCAGCGGCCGGTTGAGCGCCCGTA
324 CAGAGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGTTCAGCGCCCGAA
* * *
20044375 TGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGA
389 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
20044427 GTTTGAGCCA
Statistics
Matches: 951, Mismatches: 158, Indels: 58
0.81 0.14 0.05
Matches are distributed among these distances:
683 5 0.01
684 519 0.55
685 6 0.01
686 2 0.00
687 1 0.00
688 4 0.00
691 3 0.00
693 2 0.00
694 7 0.01
695 3 0.00
696 2 0.00
697 3 0.00
699 1 0.00
700 1 0.00
701 1 0.00
702 1 0.00
704 2 0.00
705 4 0.00
708 1 0.00
709 6 0.01
710 351 0.37
711 26 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (683 bp):
CATTCTGCCTCTCCGATCGACCTCTACAGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
GGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGT
GCATTCTGCCTCTCCGATTGGCTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCA
GAGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGTTCAGCGCCCGAACG
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGATTGAA
GGTCGCAACAGCAGGGCGGTCCTCGGCTGACTCGTTCCACCTCTCAGACCGGCTGAGTGCCCGCA
CGCTCATTTCGTGGCTTGGCATAGGCATACAGAGTTCATTCCACATCTAAGCATACGAAGTTCAT
TCCCAATCTAAGATCAGACCGGACCGAGGGTTACGATACCAAGACCAGCAGCAGGATCAGCAACA
CACAAAGGGGACCGAGCCGATCCCCGGCTTGCA
Found at i:20045131 original size:26 final size:26
Alignment explanation
Indices: 20045095--20045145 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20045085 TGACTTAGGA
20045095 ATACGGAGTTCA-TCCCTAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
20045121 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20045146 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:20046342 original size:26 final size:26
Alignment explanation
Indices: 20046313--20046363 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20046303 TGACTTAGGC
20046313 ATATGGAGTTCATCCCCAGTCTAAGT
1 ATATGGAGTTCATCCCCAGTCTAAGT
*
20046339 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATCCCCAGTCTAAG
20046364 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATATGGAGTTCATCCCCAGTCTAAGT
Found at i:20046697 original size:159 final size:158
Alignment explanation
Indices: 20046339--20046744 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 158
20046329 CAGTCTAAGT
**
20046339 ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCCGCAGCAGGATCGACAGC
1 ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGACAGC
* * * * * * * * *
20046404 ACGTAGGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCG
66 ACGCAGGGGGGACCGAGCCGATCCCTGACTTGCACATTATGCCTCTCCGACTGACTCAGCACCCG
* *
20046469 CACGCCCGTTTCGTGGGTTAGCTTAGGC
131 AACGCCCATTTCGTGGGTTAGCTTAGGC
* * * ** * * *
20046497 ATAGGGAGTTCATT-CCATGTATAAG-CCCTAGCTAGACCGAGGGTTGTGGCAGCAGGATCGGCA
1 ATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGA-ACCGAGGGTTGTGGCAGCAGGATCGACA
* *
20046560 GCACGCAGAGGGGGACCGAGCCGATCCCTGACTTGCACATTATGCCTCTCCGGCTGACTCAGTGA
64 GCACGCAG-GGGGGACCGAGCCGATCCCTGACTTGCACATTATGCCTCTCCGACTGACTCAG-CA
* *
20046625 -TCGAACGCTCATTTCGTGGGTT-GACTTAGGC
127 CCCGAACGCCCATTTCGTGGGTTAG-CTTAGGC
* * *
20046656 ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGTGGCGGCAGG-TCGATAGC
1 ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGACAGC
* * *
20046720 ATGCATGGGGGGATCGGGCCGATCC
66 ACGCA-GGGGGGACCGAGCCGATCC
20046745 TCAGCTTGCG
Statistics
Matches: 201, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
157 7 0.03
158 78 0.39
159 108 0.54
160 8 0.04
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (158 bp):
ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGCAGGGGGGACCGAGCCGATCCCTGACTTGCACATTATGCCTCTCCGACTGACTCAGCACCCG
AACGCCCATTTCGTGGGTTAGCTTAGGC
Found at i:20046822 original size:158 final size:158
Alignment explanation
Indices: 20046343--20046838 Score: 484
Period size: 158 Copynumber: 3.1 Consensus size: 158
20046333 CTAAGTATAT
**
20046343 GGAGTTCATTCCCA-GTCTAAGATCGGATCGAACCGAGGGTTGCCGCAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* ** * * * *
20046407 TAGGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCC-TCTCCGACTGGCTGAGCACCCGCA
65 CAGGGGGGATCGGGCCGATCCTCAGCTTGCGCATTCTGCCTTTTCAG-CTGGCTGAGCGCCCACA
* * *
20046471 CGCCCGTTTCGTGGGTTAGCTTAGGCATAG
129 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * ** * * *
20046501 GGAGTTCATTCCATGTATAAG-CCCTAGCTAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACG
1 GGAGTTCATTCCATGTCTAAGATCGGATCGA-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * * * * * * * * * * *
20046565 CAGAGGGGGACCGAGCCGATCC-CTGACTTGCACATTATGCCTCTCCGGCTGACTCAGTGATCGA
65 CAG-GGGGGATCGGGCCGATCCTCAG-CTTGCGCATTCTGCCTTTTCAGCTGGCTGAGCG-CCCA
* * *
20046629 -ACGCTCATTTCGTGGGTTGACTTAGGCATAT
127 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * *
20046660 GGAGTTCATTCCCA-GTCTAAGATCGGATCGAATCGAGGGTTGTGGCGGCAGG-TCGATAGCATG
1 GGAGTTCATT-CCATGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* *
20046723 CATGGGGGGATCGGGCCGATCCTCAGCTTGCGCATTCTACCTTTTCAGCAGGCTGAGCGCCCACA
65 CA-GGGGGGATCGGGCCGATCCTCAGCTTGCGCATTCTGCCTTTTCAGCTGGCTGAGCGCCCACA
* *
20046788 TGCTCGTTTCATGGGTTGGCTTAGGCATAC
129 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
20046818 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
20046839 CATATGGAGT
Statistics
Matches: 263, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 12 0.05
158 141 0.54
159 100 0.38
160 10 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GGAGTTCATTCCATGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
AGGGGGGATCGGGCCGATCCTCAGCTTGCGCATTCTGCCTTTTCAGCTGGCTGAGCGCCCACACG
CTCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:20046842 original size:26 final size:25
Alignment explanation
Indices: 20046812--20046863 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20046802 GTTGGCTTAG
20046812 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
20046838 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
20046863 G
1 G
20046864 ATCTGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:20047942 original size:465 final size:465
Alignment explanation
Indices: 20047071--20047999 Score: 1326
Period size: 465 Copynumber: 2.0 Consensus size: 465
20047061 CAGGACCGAC
* * **
20047071 AGCGGGATCGACAGCACGTAGAAAGGGATCGACCTGATCCCTGGCTTGTGCATTATGCCTCTCCA
1 AGCGGGATAGACAGCACGTAGAAAGGGATCGACCTAATCCCTGGCTTGCACATTATGCCTCTCCA
* ** * *
20047136 ATCGGCCTCTCTGGTTGGTTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
66 ATCGACCTCTCCAGTTGGTTGAGCACTCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* *
20047201 TTCATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTAC
131 TTCATCCCCAGTCTAAGCAAACAGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTAC
* ** * *
20047266 GATAGCAGGATCGGTAGCACGCAGAGGGGATCGGGCCAATCCTCGGCTTGCGCATTCTACCTCTC
196 GACAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCAATCCCCGACTTGCGCATTCTACCTCTC
* * *
20047331 TGACCGACTGAGCACCCGTACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
261 CGACCGACTGAGCACCCGCACGCCTGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * *
20047396 TCTAAGCCCCAGCCGAAATGAGGGTTGTGACAGTGAGATTAATAGCACGCAGAGGGGGACCAGGC
326 TCTAAGCCCCAGCCGAAACGAGGGTTGTGACAGCGAGACTAACAGCACGCAGAGGGGGACCAGGC
* * * *
20047461 TGATCCCCGGCTTGTGCATTATGCCTTTTCGATCGGCTCAGTGCTCGCACGCTCATTTTGTGGGT
391 TGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGTGCTCGCACGCTCATTTTATGGGT
20047526 TGACTTAGTT
456 TGACTTAGTT
*
20047536 AGCGGGATAGACAGCACGTAGAAGGGGATC-AGCCTAAT-CCTCGGCTTGCACATTATGCCTCTC
1 AGCGGGATAGACAGCACGTAGAAAGGGATCGA-CCTAATCCCT-GGCTTGCACATTATGCCTCTC
** * * *
20047599 CGGTCGACCTCTCCAGTTTGTTGAGCACTCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGG
64 CAATCGACCTCTCCAGTTGGTTGAGCACTCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* *
20047664 AGTTCATCCCCAGTCTAAGCAAACATAGTTCATTCCCAATCTAAGATCGGA-CGGGATCGAGGGT
129 AGTTCATCCCCAGTCTAAGCAAACAGAGTTCATTCCCAATCTAAGATCAGATC-GGATCGAGGGT
* * * * *
20047728 TGCGACAGTAGGATCGACAGCATGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCT
193 TACGACAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCAATCCCCGACTTGCGCATTCTACCT
20047793 CTCCGACCGACTGAGCACCCGCACG-CTCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTC
258 CTCCGACCGACTGAGCACCCGCACGCCT-GTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTC
* * * * * * * *
20047857 CATGTCTAAGCCCTAGCCGAAACGAGGTTTGTGGCAGCGAGACTGACAGCATGTAGATGGGGATC
322 CATGTCTAAGCCCCAGCCGAAACGAGGGTTGTGACAGCGAGACTAACAGCACGCAGAGGGGGACC
* * * *
20047922 GGGTTGATCCCTGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGTGCTCGCACGCTCGTTTTAT
387 AGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGTGCTCGCACGCTCATTTTAT
20047987 GGGTTGACTTAGT
452 GGGTTGACTTAGT
20048000 CATACAGAGT
Statistics
Matches: 408, Mismatches: 52, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
464 7 0.02
465 401 0.98
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (465 bp):
AGCGGGATAGACAGCACGTAGAAAGGGATCGACCTAATCCCTGGCTTGCACATTATGCCTCTCCA
ATCGACCTCTCCAGTTGGTTGAGCACTCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
TTCATCCCCAGTCTAAGCAAACAGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTAC
GACAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCAATCCCCGACTTGCGCATTCTACCTCTC
CGACCGACTGAGCACCCGCACGCCTGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATG
TCTAAGCCCCAGCCGAAACGAGGGTTGTGACAGCGAGACTAACAGCACGCAGAGGGGGACCAGGC
TGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGTGCTCGCACGCTCATTTTATGGGT
TGACTTAGTT
Found at i:20048196 original size:26 final size:26
Alignment explanation
Indices: 20048157--20048209 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20048147 GTTGGCTTAG
20048157 GCATACGGAATTCATTCC-ATGTCTAA
1 GCATACGGAATTCATTCCTA-GTCTAA
*
20048183 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
20048209 G
1 G
20048210 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:20048441 original size:26 final size:26
Alignment explanation
Indices: 20048412--20048464 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20048402 GTTGACTTAG
20048412 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
20048438 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20048464 G
1 G
20048465 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20048816 original size:159 final size:159
Alignment explanation
Indices: 20048618--20048925 Score: 368
Period size: 159 Copynumber: 1.9 Consensus size: 159
20048608 CCATCCGGAA
* * * * *
20048618 TGAGGGTTGTGGCAACAGGACCGGTAGCACGCAGAGGGGGACCGGGCAGATCCCTGGCTTGTACA
1 TGAGGGTTGCGGCAACAGGACCGATAGCACGCAGAGGGGGACCGGGCAGATCCCCGACTTGCACA
* * * * *
20048683 TTATGCCTCTTCGGCCGACTCAGCG-CCTGCACACTTGTTTCATGGGTTGACTTATGCATACGGA
66 TTATGCCTCTCCGACCGACTAAGCGTCC-GCACACTCGTTTCATGGGTTGACTTAGGCATACGGA
20048747 GTTCATTCCCAATCGAAGATCAGATCAGAC
130 GTTCATTCCCAATCGAAGATCAGATCAGAC
* * * * * * *
20048777 TGAGGGTTGCGGTAGCAGGATCGATAGCACGCATG-GGGGGATCGGGCTGATCCCCGATTTGCGC
1 TGAGGGTTGCGGCAACAGGACCGATAGCACGCA-GAGGGGGACCGGGCAGATCCCCGACTTGCAC
* * * *
20048841 ATTCTGCCTCTCCGACCGACTAAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
65 ATTATGCCTCTCCGACCGACTAAGCGTCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGA
* * *
20048906 GTTCTTTCCCAGTCTAAGAT
130 GTTCATTCCCAATCGAAGAT
20048926 TTTGAGCCAC
Statistics
Matches: 123, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
159 120 0.98
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
TGAGGGTTGCGGCAACAGGACCGATAGCACGCAGAGGGGGACCGGGCAGATCCCCGACTTGCACA
TTATGCCTCTCCGACCGACTAAGCGTCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAATCGAAGATCAGATCAGAC
Found at i:20049630 original size:26 final size:26
Alignment explanation
Indices: 20049594--20049646 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20049584 GTTGACTTAG
20049594 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20049620 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20049646 G
1 G
20049647 ATAGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20050150 original size:26 final size:26
Alignment explanation
Indices: 20050099--20050151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20050089 GTTGGCTTAG
* *
20050099 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
20050125 GCATACAGAGTTCATTCC-TAGCCTAA
1 GCATACAGAGTTCATTCCAT-GCCTAA
20050151 G
1 G
20050152 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:20051330 original size:160 final size:158
Alignment explanation
Indices: 20051104--20051522 Score: 412
Period size: 158 Copynumber: 2.6 Consensus size: 158
20051094 GGGACCGGGT
* * * * * * * * * * *
20051104 CGATCCTCGACTTGCGCATTCTGCCTCTTCGGTTGGTTGAGCACCCGCACACCCGTTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTATGCCACTCCGGCTGGCTCAGCGCCCGCACGCTCATTTCGTGGGT
* * *
20051169 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCCGAGGGTTGTGGCAGCG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAACCGGA-CCGAGGGTTGTGGCAGCA
*
20051234 GGA-CTGAC-AGCACGCAGAGGGGGATCGGAT
130 GGATC-GACGA-CACGCAG-GGGGGATCGGAC
* ** * * * *
20051264 CGATCCTCGGCTTTCGTGTTATGCCACTCCGGCTGGCTCAGTGCCCGTATGCTCATTTCATGGGT
1 CGATCCTCGGCTTGCGCATTATGCCACTCCGGCTGGCTCAGCGCCCGCACGCTCATTTCGTGGGT
* ** * ** ** *
20051329 TGACTTATACATACAGAGTTCATTCCCA-GTCTAAGATAGGATCGGACCGAGGGTTGTGGCAGCA
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCACAACCGGACCGAGGGTTGTGGCAGCA
* *
20051393 GGATCGACGACACGCAGGGGGGATTGGGC
130 GGATCGACGACACGCAGGGGGGATCGGAC
* * ** * * *
20051422 CGATCCTCGGCTTGCGCATTCTGCCTCTTTGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTATGCCACTCCGGCTGGCTCAGCGCCCGCACGCTCATTTCGTGGGT
20051487 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20051523 ATACGGAGTT
Statistics
Matches: 203, Mismatches: 52, Indels: 10
0.77 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 87 0.43
159 30 0.15
160 80 0.39
161 3 0.01
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.26
Consensus pattern (158 bp):
CGATCCTCGGCTTGCGCATTATGCCACTCCGGCTGGCTCAGCGCCCGCACGCTCATTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAACCGGACCGAGGGTTGTGGCAGCAG
GATCGACGACACGCAGGGGGGATCGGAC
Found at i:20051531 original size:26 final size:26
Alignment explanation
Indices: 20051495--20051547 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20051485 GTTGGCTTAG
20051495 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
20051521 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
20051547 G
1 G
20051548 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:20052249 original size:26 final size:26
Alignment explanation
Indices: 20052219--20052271 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20052209 GTTGACTTAG
20052219 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
20052245 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20052271 G
1 G
20052272 AGCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20052836 original size:342 final size:349
Alignment explanation
Indices: 20052459--20053812 Score: 921
Period size: 368 Copynumber: 3.8 Consensus size: 349
20052449 TGGGGCATGA
* ** * *
20052459 GATCGACAGCACGTAGAGGGGGATCAGATCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGA
1 GATCGACAGCACG--CAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTTTCCGACCGG
* * ** **
20052524 CTCAGCGCCTGTACGCTCATTTCATGGGTTCACTTAGGCATACAAAGTTCATTCCCA-GTCTAAG
64 CTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* *
20052588 AT-C-AGACCAAACTGAGGGTTGCGACAGTAGGATC-G-A-C-A-GCACGCA-G-GA-GGGGATT
128 -TCCTA-ACCAAACTGAGGGTTGCGACAGCAGGATCGGTAGCGACGCA-GCATGAGAGGGGGATC
* * * ** *
20052643 GGG-TCGGTCCCCGACTTACGCCTTCTGCCTCTCCGACCGGTTGAGAGCTTGCACGCTCGTTTCA
190 GGGCT-GATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGAGCTCGCACGCTCGTTTCA
* * * * * *
20052707 TGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATTTCTAAGCATACGGAGTTCATTCCCAGTCTA
254 TGGGTTGACTTAAGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTA
* * *
20052771 GGATTGGACCAAATTGAGGGTTGCAGCAGCAG
318 AGATCGGACCAAAGTGAGGGTTGCAGCAGCAG
* * *
20052803 GATCGACAGCACGCAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTTTACCTTTCCGACCGGCT
1 GATCGACAGCACGCAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTTTCCGACCGGCT
* * * * * *
20052868 GAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGTCC
66 GAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCC
* * *
20052933 TAACCGAACTGAGGGTTGTGGCAGCAGGATCGGTAGCGGGATCGGCAGCATGCAGAGGGGGATCG
131 TAACCAAACTGAGGGTTGCGACAGCAGGATCGGTAGC--GA-C-GCAGCATG-AGAGGGGGATCG
** ** * *** * * *
20052998 GGCTGATCGTCGACTTGTGCATTATGCCTCTCTGGTTGACTGAGCGCTCGTACGCTCGTTTCGTG
191 GGCTGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGAGCTCGCACGCTCGTTTCATG
20053063 GGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
256 GGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
** *
20053128 TCGGACCGGAGTGAGGGTTGCAGCAGCGG
321 TCGGACCAAAGTGAGGGTTGCAGCAGCAG
* * * * * * *
20053157 GATCGACAGCATGCAGGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGTCTTTTCGATCGGC
1 GATCGACAGCACGCA-GGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTTTCCGACCGGC
* * * *
20053222 TGAGCGCCTGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
65 TGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTC
* * *** * ** * ** * * * *
20053287 CCAGCTGGACCGACAGTTGTGGTAGCAGGACCGACAGT-GGGATCGGCAGCACGCAGAGAGGGAT
130 CTAACCAAACTGAGGGTTGCGACAGCAGGATCG---GTAGCGA-C-GCAGCATG-AGAGGGGGAT
* * * * * * *
20053351 CGGGTTGATCCTCGACTTGCGCATTATGCTTCTCTGGTCGGCCTCTTCGATCGATTGAGTGCCCG
189 CGGGCTGATCCCCGACTTACGCATTATG---C-C---T----CTC--CGACCGACTGAGAGCTCG
* * * *
20053416 CACGCTCGTTTCGTGGGTTGAC-TAAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAGTT
241 CACGCTCGTTTCATGGGTTGACTTAA-GCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTT
* * * ** * * * * *
20053480 CATTCCTAGTCTAAGATCAGACCAGACCGATGGTTGCGGTAGTAA
305 CATTCCCAGTCTAAGATCGGACCAAAGTGAGGGTTGCAGCAGCAG
* * * * * **
20053525 GATCGACAGCACGCAGGAGGGA-CCGAGTCGATCCCTGACTTGCGCATTCTGCCTGTCCGGTCGG
1 GATCGACAGCACGCAGG-GGGATCAG-GCCGATCCCCGACTTGCGCATTATGCCTTTCCGACCGG
* * * * *
20053589 CTGAGCACCTGCACGAC-CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTTTAAG
64 CTGAGCGCCTGCACG-CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * * * *
20053653 CCCCCAACCAGATTGAGGGTTG-G--GGCA--A-CGAG-ACCGACAGCA-CA-CAGAGGGGGATC
128 -TCCTAACCAAACTGAGGGTTGCGACAGCAGGATCG-GTAGCGAC-GCAGCATGAGAGGGGGATC
* * * * ** * * * *
20053709 -GGATCGATCCCC-AGTTTGCGCATTATGCCTCTCCGACTGGTTCAGCA-CCCGTACGCTCATTT
190 GGGCT-GATCCCCGA-CTTACGCATTATGCCTCTCCGACCGACTGAG-AGCTCGCACGCTCGTTT
* * *
20053771 CATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
252 CATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAG
20053813 ATCAGACCGA
Statistics
Matches: 814, Mismatches: 151, Indels: 90
0.77 0.14 0.09
Matches are distributed among these distances:
341 3 0.00
342 117 0.14
343 2 0.00
344 69 0.08
345 3 0.00
346 3 0.00
348 1 0.00
350 4 0.00
351 4 0.00
353 3 0.00
354 146 0.18
355 171 0.21
356 4 0.00
357 29 0.04
358 3 0.00
359 3 0.00
360 4 0.00
361 4 0.00
362 1 0.00
363 2 0.00
364 1 0.00
366 6 0.01
367 7 0.01
368 209 0.26
369 15 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (349 bp):
GATCGACAGCACGCAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTTTCCGACCGGCT
GAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCC
TAACCAAACTGAGGGTTGCGACAGCAGGATCGGTAGCGACGCAGCATGAGAGGGGGATCGGGCTG
ATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGAGCTCGCACGCTCGTTTCATGGGTTG
ACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
CCAAAGTGAGGGTTGCAGCAGCAG
Found at i:20053100 original size:26 final size:26
Alignment explanation
Indices: 20053071--20053126 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20053061 TGGGTTGACT
*
20053071 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
*
20053097 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
20053123 TAAG
1 TAAG
20053127 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:20053352 original size:355 final size:362
Alignment explanation
Indices: 20052693--20053661 Score: 1105
Period size: 368 Copynumber: 2.7 Consensus size: 362
20052683 TTGAGAGCTT
* * * * * *
20052693 GCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATTTCTAAGCATACGGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCA-ATCTAAGCATACGGAGT
* * * *
20052757 TCATTCCCAGTCTAGGATTGGACCAAATTGAGGGTTGCAGCAGCAGGATCGACAGCACGCA-GGG
65 TCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGG
* * * * * * * ** * *
20052821 GGATCAGGCCGATCCCCGGCTTGCGCATTTTACCTTTCCGACCGGCTGAGTGCCCGCATGCTCGT
130 GGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTCCGATCGGCTGAGCGCCTGCACACCCAT
* * * * * **
20052886 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGTCCTAACCGAACTGAGGGTTG
195 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGACAGTTG
* ** * * * *
20052951 TGGCAGCAGGATCGGTAGCGGGATCGGCAGCATGCAGAGGGGGATCGGGCTGATCGTCGACTTGT
260 TGGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGAGGGATCGGGCTGATCCTCGACTTGC
*
20053016 GCATTATGC-CTCT-CT-GG-TT-GA-C-TGAGCGCTC
325 GCATTATGCTCTCTGCTCGGCTTCGATCATGAGCGCCC
* * *
20053047 GTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTT
* * * *
20053112 CATTCCCAGTCTAAGATCGGACCGGAGTGAGGGTTGCAGCAGCGGGATCGACAGCATGCAGGGGG
66 CATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGG
* * *
20053177 GATCGGGCCAATCCCCGACTTGCGCATTCTGTCTTTTCGATCGGCTGAGCGCCTGCACACCCATT
131 GATCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTCCGATCGGCTGAGCGCCTGCACACCCATT
* * * *
20053242 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGACAGTTGT
196 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGACAGTTGT
* * *
20053307 GGTAGCAGGACCGACAGTGGGATCGGCAGCACGCAGAGAGGGATCGGGTTGATCCTCGACTTGCG
261 GGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGAGGGATCGGGCTGATCCTCGACTTGCG
* *
20053372 CATTATGCTTCTCTGGTCGGCCTCTTCGATCGATTGAGTGCCC
326 CATTATGC-TCTCTGCTCGG---CTTCGATC-A-TGAGCGCCC
*
20053415 GCACGCTCGTTTCGTGGGTTGAC-TAAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAA-GCATACGGAGTTCATCCCCAATCTAAGCATACGGAGT
* * * * * * * * *
20053479 TCATTCCTAGTCTAAGATCAGACCAGACCGATGGTTGCGGTAGTAAGATCGACAGCACGCAGGAG
65 TCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGG
* * * * * * *
20053544 GGACCGAGTCGATCCCTGACTTGCGCATTCTGCCTGTCCGGTCGGCTGAGCACCTGCACGA-CCA
130 GGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTCCGATCGGCTGAGCGCCTGCAC-ACCCA
* *
20053608 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTTTAAGCCCCCAACC
194 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAACC
20053662 AGATTGAGGG
Statistics
Matches: 512, Mismatches: 85, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
354 106 0.21
355 175 0.34
357 4 0.01
358 1 0.00
359 2 0.00
363 2 0.00
364 2 0.00
365 1 0.00
367 3 0.01
368 209 0.41
369 7 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (362 bp):
GCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGG
GATCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTCCGATCGGCTGAGCGCCTGCACACCCATT
TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGACAGTTGT
GGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGAGGGATCGGGCTGATCCTCGACTTGCG
CATTATGCTCTCTGCTCGGCTTCGATCATGAGCGCCC
Found at i:20053971 original size:159 final size:159
Alignment explanation
Indices: 20053468--20053962 Score: 522
Period size: 159 Copynumber: 3.1 Consensus size: 159
20053458 CCCAATCTAA
** * * *
20053468 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGATGGTTGCGGTAGTAAGATCGACA
1 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGTAGGATCGACA
* * * * ** *
20053533 GCACGCAGGA-GGGACCGAGTCGATCCCT-GACTTGCGCATTCTGCCTGTCCGGTCGGCTGAGCA
66 GCACACAGGAGGGGATCGGGTCGATCCCTAG-CTTGCGCATTCTGCCTATCCGACCGGTTGAGCA
20053596 CCTGCACGAC-CATTTCGTGGGTTGGCTTAG
130 CCTGCACG-CTCATTTCGTGGGTTGGCTTAG
* * ** * *
20053626 GCATAGGGAGTTCATT-CTATGTTTAAGCCCCCA-ACCAGATTGAGGGTTGGGGCA--ACGAGAC
1 GCATATGGAGTTCATTCCTA-GTCTAAG--ATCAGACCAGATTGAGGGTTGCGGCAGTA-G-GAT
* * * * * *
20053687 CGACAGCACACA-GAGGGGGATCGGATCGATCCCCAGTTTGCGCATTATGCCTCTCCGACTGGTT
61 CGACAGCACACAGGA-GGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTATCCGACCGGTT
* * * * *
20053751 CAGCACCCGTACGCTCATTTCATGGGTTGACTTAG
125 GAGCACCTGCACGCTCATTTCGTGGGTTGGCTTAG
* *
20053786 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATTGAGGGTTGTGGCAGTAGGATCGAC
1 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAG-ATTGAGGGTTGCGGCAGTAGGATCGAC
* ** *
20053850 AGCACACAGGAGGGGATCGGGTCGGTCCCTAGCTTATGCATTCTGCCTATCCGACCGGTTGAGCG
65 AGCACACAGGAGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTATCCGACCGGTTGAGCA
*
20053915 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCTGCACGCTCATTTCGTGGGTTGGCTTAG
20053945 GCATATGGAGTTCATTCC
1 GCATATGGAGTTCATTCC
20053963 GTTTCTAAGC
Statistics
Matches: 271, Mismatches: 51, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 26 0.10
159 148 0.55
160 89 0.33
161 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGTAGGATCGACA
GCACACAGGAGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTATCCGACCGGTTGAGCAC
CTGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20054545 original size:26 final size:26
Alignment explanation
Indices: 20054515--20054567 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20054505 GTTGACTTAG
*
20054515 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20054541 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20054567 G
1 G
20054568 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20055222 original size:26 final size:26
Alignment explanation
Indices: 20055192--20055244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20055182 GTTGACATAG
*
20055192 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20055218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20055244 G
1 G
20055245 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20057066 original size:26 final size:26
Alignment explanation
Indices: 20057030--20057082 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20057020 GTTGACTTAG
20057030 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
20057056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20057082 G
1 G
20057083 ATTGAATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20057409 original size:26 final size:25
Alignment explanation
Indices: 20057372--20057423 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
20057362 GTTGACTTAG
20057372 GCATACGAGTTCATCCCCAATCTAA
1 GCATACGAGTTCATCCCCAATCTAA
* *
20057397 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATCCCCAATCTAA
20057423 G
1 G
20057424 ATTGGACAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAATCTAA
Found at i:20057555 original size:342 final size:342
Alignment explanation
Indices: 20056975--20057740 Score: 968
Period size: 342 Copynumber: 2.2 Consensus size: 342
20056965 TGCCTCTCCG
* * * * *
20056975 ATTG-GCCTCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
1 ATTGTGCCTCTTTGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* * *
20057039 GTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGAACCGATGGTTA
66 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGAATCGAACCGAAGGTTA
** * * * *
20057104 CGGCAGCAGGATCGGCAGCACGCAGGGGGACCGAACCGATCTCCAGCTTTCGCATTCTGCCTCTC
131 CAACAGCAGGATCGGCAGCACGCAGGGGAACCGAACCGATCCCCAACTTGCGCATTCTGCCTCTC
*
20057169 CAGTCGGCTGAACACCTGCACGCTAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
196 CAGTCGGCTGAACACCTGCACGCCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* ** *
20057234 TCTAAGCCCCAGCCAGA-CTGAGTGTTGTGGCAGCCAGACCGGTAGCATGCAGAGGGGGACCGGG
261 TCTAAGCCCCAGCCAGATC-GAGGGTTGTGGCAGCCAGACCGACAGCACGCAGAGGGGGACCGGG
**
20057298 CCGATCCTTGGCTTACGC
325 CCGATCCCCGGCTTACGC
* * *
20057316 ATTGTGCCTCTTTGGCCGGCTCAGCGCCCGCACGCTTGCTCCGTGGGTTGACTTAGGCATAC-GA
1 ATTGTGCCTCTTTGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* * * *
20057380 GTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGA-CAGGATCGAAGGTT
66 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGAATC-GAACCGAAGGTT
* * * * * *
20057444 GCAACAGCAGGATCGGCAGCACGGAGGGCGAATCGAGCCGATCCCCAACTTGCGCGTTCTGTCTC
130 ACAACAGCAGGATCGGCAGCACGCAGGG-GAACCGAACCGATCCCCAACTTGCGCATTCTGCCTC
* **
20057509 TCCAGTCGGCTGAACA-CTCGC-CTGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
194 TCCAGTCGGCTGAACACCT-GCAC-GCCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * **
20057572 CATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACC
257 CATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCCAGACCGACAGCACGCAGAGGGGGACC
* **
20057637 GGGTCGATCCCCGGCTTGTGC
322 GGGCCGATCCCCGGCTTACGC
* * * * * * * *
20057658 ATTGTGCCTCTTCGACCGGCTCAACGCTCGCACGCTCATTTTGTGGGTTTACTTATGCATACAGA
1 ATTGTGCCTCTTTGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
*
20057723 GTTCATTCCCAGTCTAAG
66 GTTCATCCCCAGTCTAAG
20057741 ATCAGACCGA
Statistics
Matches: 362, Mismatches: 56, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
340 1 0.00
341 88 0.24
342 254 0.70
343 19 0.05
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (342 bp):
ATTGTGCCTCTTTGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGAATCGAACCGAAGGTTA
CAACAGCAGGATCGGCAGCACGCAGGGGAACCGAACCGATCCCCAACTTGCGCATTCTGCCTCTC
CAGTCGGCTGAACACCTGCACGCCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
TCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCCAGACCGACAGCACGCAGAGGGGGACCGGGC
CGATCCCCGGCTTACGC
Found at i:20057874 original size:156 final size:159
Alignment explanation
Indices: 20057535--20057898 Score: 400
Period size: 156 Copynumber: 2.3 Consensus size: 159
20057525 CTCGCCTGCC
* ** *
20057535 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCAGATCGAGG
1 CGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCTAGCCAGAACGAGG
* * * * * * *
20057599 GTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTGTG
65 GTTGCGGTAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTG
*
20057664 CCTCTTCGACCGGCTCAACGCTCGCACGCT
130 CCTCTTCGACCGGCTCAACGCCCGCACGCT
* ** * *
20057694 CATTTTGTGGGTTTACTTATGCATACAGAGTTCATTCCCAGTCTAAGATC-AGACC-GAACTGA-
1 CGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTAG-CCAGAAC-GAG
* * * * *
20057756 GGTTGCGGTAGCAGGATCGATAGCATACAG-GGGTGACCAGGTTGAT-CCCGACTTGCGCATTCT
64 GGTTGCGGTAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTCT
* * * *
20057819 GCCTC-TCTGACCTGCTGAGCGCCCGTACGCT
129 GCCTCTTC-GACCGGCTCAACGCCCGCACGCT
*
20057850 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 CGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
20057899 TTTGAGCCAC
Statistics
Matches: 169, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
155 2 0.01
156 80 0.47
157 13 0.08
158 29 0.17
159 42 0.25
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (159 bp):
CGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTAGCCAGAACGAGGG
TTGCGGTAGCAGGACCGACAGCACACAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGC
CTCTTCGACCGGCTCAACGCCCGCACGCT
Found at i:20057982 original size:11 final size:11
Alignment explanation
Indices: 20057966--20058002 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
20057956 CCCGGGGCAC
20057966 CATCGCCGGAG
1 CATCGCCGGAG
20057977 CATCGCCGGAG
1 CATCGCCGGAG
20057988 CATCGCCGGAG
1 CATCGCCGGAG
20057999 CATC
1 CATC
20058003 AAGAGAGCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.19, C:0.38, G:0.32, T:0.11
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:20058010 original size:22 final size:22
Alignment explanation
Indices: 20057966--20058010 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
20057956 CCCGGGGCAC
**
20057966 CATCGCCGGAGCATCGCCGGAG
1 CATCGCCGGAGCATCGAAGGAG
20057988 CATCGCCGGAGCATC-AAGAGAG
1 CATCGCCGGAGCATCGAAG-GAG
20058010 C
1 C
20058011 CTAATCGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.24, C:0.33, G:0.33, T:0.09
Consensus pattern (22 bp):
CATCGCCGGAGCATCGAAGGAG
Found at i:20058616 original size:26 final size:26
Alignment explanation
Indices: 20058587--20058639 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20058577 GTTGACTTAG
20058587 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20058613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20058639 G
1 G
20058640 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20058934 original size:159 final size:159
Alignment explanation
Indices: 20058613--20059589 Score: 788
Period size: 159 Copynumber: 6.2 Consensus size: 159
20058603 CCCAGTCTAA
** * * **
20058613 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCAACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * *
20058677 AGCATGCA-AGGGGGACCGGGCTC-ATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTAAGC
65 AGCACGCAGAGGGGGACCGGGC-CGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* * * *
20058740 GCCCGTATGCCCATTTCGTGGTTTGGCTTAG
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * *
20058771 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCCAACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * * * *
20058836 GCATGCTGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTTCGGCAGGCTCACCGC
66 GCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * * *
20058901 CCGCACGCTCGTTCCGTGGGTTGACTTAT
131 CCGCACGCTCATTTCGTGGGTTGGCTTAG
** ** * * *
20058930 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCAACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
20058994 AGCATGCAGGGGGGGACTGGGCCAATCCCCGGCTTGCACATTCTGCCTCTTCGGCCAGCTGAGCG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
20059059 CTCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * ** * *
20059089 GCATACGGAGTTCGTTCCCTATCTAAG---CATA-CGGAGTTCA----T-TCCCAGTCTAAGATT
1 GCATACGGAGTTCATTCCATGTCTAAGATCCA-ACCGGA-CTGAGGGTTGTGGCAG-C-AGGATC
*** ** * *
20059145 TTGAGCCACGGTGCAG-GGGGGACCGGGCCGATCCTTGACTTGCGCATTCTGCCTCTCCGACCGA
62 GACAG-CAC---GCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGG
* *
20059209 CTGAGCGCCCGCACGC-CTATTTCATGGGTTGGCTAAG
123 CTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAG
** * * **
20059246 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-TGGAGGGTTGTGGTAGTGGGATC-AG
1 GCATACGGAGTTCATTCCATGTCTAAGATCCAACCGGACT-GAGGGTTGTGGCAGCAGGATCGA-
* * * * * *
20059309 CAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTAC-ACCTCTCCGGCCTGCTCAA
64 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT-CTGCCTCTCCGGCCGGCTGAG
* *
20059373 CGCCCGCACGCTCATTTCGTGGGTTGACTTTG
128 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
20059405 GCATACGAAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGGGTTGTGGCAACAGGATCTAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCAACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
20059469 AACACGCAGA-GGGGATCGGGTCGATCCCCGACTTACGCATTTTGCCTCTCCGACCGGCTGAGCG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
20059533 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
20059563 GCACACAGAGTTCATTCCATGTTTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20059590 CATACAGAGT
Statistics
Matches: 641, Mismatches: 145, Indels: 66
0.75 0.17 0.08
Matches are distributed among these distances:
152 2 0.00
153 2 0.00
154 6 0.01
155 2 0.00
156 5 0.01
157 101 0.16
158 156 0.24
159 339 0.53
160 16 0.02
161 3 0.00
162 5 0.01
163 1 0.00
164 3 0.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCCAACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20059119 original size:26 final size:26
Alignment explanation
Indices: 20059089--20059141 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20059079 GTTGGCTTAG
*
20059089 GCATACGGAGTTCGTTCCCTA-TCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
20059115 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20059141 G
1 G
20059142 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20059293 original size:316 final size:316
Alignment explanation
Indices: 20058845--20059431 Score: 673
Period size: 316 Copynumber: 1.9 Consensus size: 316
20058835 AGCATGCTGA
* * * * *
20058845 GGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTTCGGCAGGCTCACCGCCCGCACGCT
1 GGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACAGACTCACCGCCCGCACGCT
* * * * * *
20058910 CGTTCCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGG
66 CATTCCATGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGG
* * * * *
20058975 TTGCGGTAGCAGGATC-GATAGCATGCAGGGGGGGACTGGGCCAATCCCCGGCTTGCACATT-CT
131 TTGCGGTAGCAGGATCAG-CAGCACGCAGAGGGGGACCGGGCCAATCCCCGACTTGCACATTAC-
* * * * * * * * *
20059038 GCCTCTTCGGCCAGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCG
194 ACCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA
20059103 TTCCCTA-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCAG
259 TTCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCAG
* * * * *
20059161 GGGGGACCGGGCCGATCCTTGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGC-
1 GGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACAGACTCACCGCCCGCACGCT
* * * ***
20059225 CTATTTCATGGGTTGGCTAAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATGGA
66 C-ATTCCATGGGTTGACTAAGGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCAA
* ** * * **
20059288 GGGTTGTGGTAGTGGGATCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTA
128 GGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCGGGCCAATCCCCGACTTGCACATTA
* *
20059353 CACCTCTCCGGCCTGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTTGGCATACGAAGTTC
193 CACCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
20059418 ATTCCCAGTCTAAG
258 ATTCCCAGTCTAAG
20059432 ATCGAACCGG
Statistics
Matches: 220, Mismatches: 45, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
315 5 0.02
316 211 0.96
317 4 0.02
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (316 bp):
GGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACAGACTCACCGCCCGCACGCT
CATTCCATGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGG
TTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCGGGCCAATCCCCGACTTGCACATTACAC
CTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCAG
Found at i:20059799 original size:196 final size:196
Alignment explanation
Indices: 20059459--20059843 Score: 497
Period size: 196 Copynumber: 2.0 Consensus size: 196
20059449 GTTGTGGCAA
* * * * *
20059459 CAGGATCTACAACACGCAGAGGGGATCGGGTCGATCCCCGACTTACGCATTTTGCCTCTCCGACC
1 CAGGATCGACAACACGCAGAGGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCAACC
* * * * **
20059524 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCACACAGAGTTCATTCCATGTTTAA
66 GACTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCACACAGAGTTCATCCCATGCCTAA
* * * *
20059589 GCATACAGAGTTCATTCCCAGTCAAAGATCAAACTGGACTGAGGGTTGCGGCAGCAGGACCAGCA
131 GCATACAAAGTTCATTCCCAGTCAAAGATCAAACCGGACCGAGGATTGCGGCAGCAGGACCAGCA
20059654 G
196 G
* * * * *
20059655 CAGGATCGACAGCATGCAGGGGGGACCGGATCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACC
1 CAGGATCGACAACACGCAGAGGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCAACC
*
20059720 GACTGAGCA-CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATCCCCA-GCC
66 GACTGAGCACCT-GCACGCTCGTTTCGTGGGTTGACTTAGGCACACAG-AGTTCAT-CCCATGCC
* * * *
20059782 TAAGCATACAAAGTTCATTGCCAGTCTAAGATCAGACCGGACCGAGGATTGCGGTAGCAGGA
128 TAAGCATACAAAGTTCATTCCCAGTCAAAGATCAAACCGGACCGAGGATTGCGGCAGCAGGA
20059844 TCGGTAACAT
Statistics
Matches: 161, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
195 3 0.02
196 155 0.96
197 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (196 bp):
CAGGATCGACAACACGCAGAGGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCAACC
GACTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCACACAGAGTTCATCCCATGCCTAA
GCATACAAAGTTCATTCCCAGTCAAAGATCAAACCGGACCGAGGATTGCGGCAGCAGGACCAGCA
G
Found at i:20060259 original size:158 final size:158
Alignment explanation
Indices: 20059785--20060286 Score: 546
Period size: 158 Copynumber: 3.2 Consensus size: 158
20059775 CCCAGCCTAA
* * *
20059785 GCATACAAAGTTCATTGCCA-GTCTAAGATCAGACCGGACCGAGGATTGCGGTAGCAGGATCGGT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * * *
20059849 AACATGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTTTCCGACCGGCTGAGCGC
65 AGCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
20059914 CCGCAC-ATCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* ** ** * * * * *
20059943 CCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGAACCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * * * * * *
20060007 AGCATGCAGAGGGGGACCGAGTCGATCCCTGACTTACGCATTATGCCTCTCCGGCCAGCTCAGTG
65 AGCATGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * *
20060072 CCCGTACGCTTGTTTCGTGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
20060102 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCTAT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAT
* *
20060166 AGCACGCAGGGGGGACCGGGCCGATCCCC-AGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCG
65 AGCATGCAGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * **
20060230 CTCACACGCTCGTTTTTTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
20060260 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
20060287 CATACGGAGT
Statistics
Matches: 274, Mismatches: 62, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 7 0.03
158 143 0.52
159 120 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
GCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20060296 original size:26 final size:26
Alignment explanation
Indices: 20060260--20060312 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20060250 GTTGGCTTAG
20060260 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20060286 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20060312 G
1 G
20060313 ATAAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20060486 original size:196 final size:184
Alignment explanation
Indices: 20060102--20060651 Score: 620
Period size: 196 Copynumber: 2.9 Consensus size: 184
20060092 GTTGACTTAG
* * * * ***
20060102 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCTAT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * *
20060166 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * ** * * *
20060231 TCACACGCTCGTTTTTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAA
* **
20060286 GCATACGGAGTTCATTCCCAGTCTAAGATAAGACTGGACCGAGGGTTGCAGTAACAGGACCAGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTT---G---C--G----GTA
* *
20060351 GCAGGATCGGCAGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGT
54 GCAGGATCGGCAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGC
* * *
20060416 CGGCT-AGGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCA-ATC
119 CGGCTGA-GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATATC
20060479 TAA
182 TAA
** * * *
20060482 GCATACGAAGTTCATTTTCAGTCTAAGATCAGACCAGACCGGGGGTTGCGGTAGCAAGATCGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* *
20060547 GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * * *
20060612 CGTACACCCGTTTCATGGGTTGACTTAGGCATAGGGAGTT
131 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
20060652 AATTCCATGT
Statistics
Matches: 309, Mismatches: 41, Indels: 32
0.81 0.11 0.08
Matches are distributed among these distances:
184 147 0.48
185 1 0.00
187 1 0.00
188 1 0.00
190 2 0.01
192 1 0.00
193 1 0.00
195 1 0.00
196 151 0.49
197 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAA
Found at i:20060495 original size:697 final size:694
Alignment explanation
Indices: 20059156--20061011 Score: 2463
Period size: 697 Copynumber: 2.7 Consensus size: 694
20059146 TGAGCCACGG
* * *
20059156 TGCAGGGGGGACCGGGCCGATCCTTGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGC
1 TGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
* * * * * **
20059221 ACGCCTATTTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATG
66 ACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACC
* * * * *
20059286 GAGGGTTGTGGTAGTGGGATC-AGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCA
131 GAGGGTTGTGGCAGCGGGATCGA-CAGCACGCAGAGGGGGACCGAGTCGATCCCTGACTTGCGCA
** * * ** *
20059350 TTACACCTCTCCGGCCTGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTTGGCATACGAAG
195 TTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACG-AG
* * * *
20059415 TTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGCAACAGGATCTACAACACGCAGAG
259 TTCATTCCCAGTCTAAGATCGAACCGGAC-GAGGGTTGCGGCAGCAGGATCTACAGCACGCAGGG
* * ** *
20059480 GGGATCGGGTCGATCCCCGACTTACGCATTTTGCCTCTCCGACCGGCTGAGCGCCTGCACGCTCG
323 GGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC-GCACGCTCG
* * * *
20059545 TTTCGTGGGTTGGCTTAGGCACACAGAGTTCATTCCATGTTTAAGCATACAGAGTTCATTCCCAG
387 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
20059610 TCAAAGATCAAACTGGACTGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAGCATGCAGG
452 TCTAAGATCAAACTGGACCGAGGGTTGCAGCAACAGGACCAGCAGCAGGATCGACAGCATGCAGG
20059675 GGGGACCGGATCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCACTCGCACGCTC
517 GGGGACCGGATCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCACTCGCACGCTC
*
20059740 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGCCTAAGCATACAAAGTTCATTGCCA
582 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAACCTAAGCATACAAAGTTCATTGCCA
* * *
20059805 GTCTAAGATCAGACCGGACCGAGGATTGCGGTAGCAGGATCGGTAACA
647 GTCTAAGATCAGACCAGACCGAGGATTGCGGTAGCAAGATCGGCAACA
*
20059853 TGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTTTCCGACCGGCTGAGCGCCCGC
1 TGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
* * * *
20059918 ACATCCATTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACC
66 ACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACC
* *
20059983 GAGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGAGTCGATCCCTGACTTACGCAT
131 GAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAGTCGATCCCTGACTTGCGCAT
* *
20060048 TATGCCTCTCCGGCCAGCTCAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGT
196 TATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC-GAGT
* * *
20060113 TCATTCCCAGTCTAAGATC-AGATCGGATCGAGGGTTGCGGTAGCAGGATCTATAGCACGCAGGG
260 TCATTCCCAGTCTAAGATCGA-ACCGGA-CGAGGGTTGCGGCAGCAGGATCTACAGCACGCAGGG
* *
20060177 GGGACCGGGCCGATCCCC-AGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCTCACACGCTC
323 GGGACCGGGCCGATCCCCGA-CTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC-CGCACGCTC
**
20060241 GTTTTTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
386 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * *
20060306 GTCTAAGAT-AAGACTGGACCGAGGGTTGCAGTAACAGGACCAGTAGCAGGATCGGCAGCATGCA
451 GTCTAAGATCAA-ACTGGACCGAGGGTTGCAGCAACAGGACCAGCAGCAGGATCGACAGCATGCA
* * * *** * *
20060370 GGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAGGTGC-C-CGCAC
515 GGGGGGACCGGATCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGACT--GAGCACTCGCAC
* * * *
20060433 GCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAATCTAAGCATACGAAGTTCATT
578 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAACCTAAGCATACAAAGTTCATT
** * * *
20060498 TTCAGTCTAAGATCAGACCAGACCGGGGGTTGCGGTAGCAAGATCGGCAGCA
643 GCCAGTCTAAGATCAGACCAGACCGAGGATTGCGGTAGCAAGATCGGCAACA
* * * * * *
20060550 CGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCC-AGCCGGCTGAGCGCCCG
1 TGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCG
* * * * *
20060614 TACACCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTAATTCCATGTTTAAGCCCCAGCC-AGA
65 CACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA-A
* * * * * *
20060678 CCGAAGGTTGTGACAGCGGGATCGGCAGCACACAGAAGGGGACC-AGGTCGAT-CCTCGGCTTGC
129 CCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGA-GTCGATCCCT-GACTTGC
* ** * * *
20060741 GCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACACTTGTTTCGTGGGTTGACTTATGCATACG
192 GCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC-
* * * *
20060806 GAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
256 GAGTTCATTCCCAGTCTAAGATCGAACCGGA-CGAGGGTTGCGGCAGCAGGATCTACAGCACGCA
* * * *
20060871 GGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGTTGAGCACCCGTACAC
320 GGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGC-GCCGCACGC
* *
20060936 TCGTTTCGTGGGTTGGCTTAGGCGTACGGTGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
384 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
20061001 CAGTCTAAGAT
449 CAGTCTAAGAT
20061012 TTTGAGCCAC
Statistics
Matches: 1013, Mismatches: 130, Indels: 32
0.86 0.11 0.03
Matches are distributed among these distances:
696 10 0.01
697 992 0.98
698 8 0.01
699 3 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (694 bp):
TGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
ACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACC
GAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAGTCGATCCCTGACTTGCGCAT
TATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAGTT
CATTCCCAGTCTAAGATCGAACCGGACGAGGGTTGCGGCAGCAGGATCTACAGCACGCAGGGGGG
ACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCGCACGCTCGTTTC
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCAAACTGGACCGAGGGTTGCAGCAACAGGACCAGCAGCAGGATCGACAGCATGCAGGGGGG
ACCGGATCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCACTCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAACCTAAGCATACAAAGTTCATTGCCAGTCT
AAGATCAGACCAGACCGAGGATTGCGGTAGCAAGATCGGCAACA
Found at i:20060770 original size:159 final size:158
Alignment explanation
Indices: 20060514--20060984 Score: 487
Period size: 159 Copynumber: 3.0 Consensus size: 158
20060504 CTAAGATCAG
** ** * * ** * * *
20060514 ACCAGACCGGGGGTTGCGGTAGCAAGATCGGCAGCACGTAGGGGGGATCGGGTCGATCCCCGGCT
1 ACCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGACCAGGTCGATCCCCGGCT
* * *
20060579 TGTGCATTCTGCCTC-TCCAGCCGGCTGAGCGCCCGTACACCCGTTTCATGGGTTGACTTAGGCA
66 TGTGCATTCTGCCTCTTCGA-CCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCA
* * *
20060643 TAGGGAGTTAATTCCATGTTTAAGCCCCA
130 TACGGAGTTCATTCCATGTCTAAGCCCCA
* * * * *
20060672 GCCAGACCGAAGGTTGTGACAGCGGGATCGGCAGCACACAGAAGGGGACCAGGTCGATCCTCGGC
1 ACCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAG-AGGGGACCAGGTCGATCCCCGGC
* * * * * * *
20060737 TTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACACTTGTTTCGTGGGTTGACTTATGCA
65 TTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCA
** *
20060802 TACGGAGTTCATTCC-TAGTCTAAGATCGA
130 TACGGAGTTCATTCCAT-GTCTAAGCCCCA
* * ** * * * *
20060831 ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACT
1 ACCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGACCAGGTCGATCCCCGGCT
* * * * *
20060896 TGTGCATTCTGCCTCTCCGACCGGTTGAGCACCCGTACACTCGTTTCGTGGGTTGGCTTAGGCGT
66 TGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCAT
*
20060961 ACGGTGTTCATTCCATGTCTAAGC
131 ACGGAGTTCATTCCATGTCTAAGC
20060985 ATACGGAGTT
Statistics
Matches: 252, Mismatches: 57, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
158 124 0.49
159 125 0.50
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
ACCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGACCAGGTCGATCCCCGGCT
TGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCCCCA
Found at i:20060964 original size:158 final size:157
Alignment explanation
Indices: 20060482--20060983 Score: 569
Period size: 158 Copynumber: 3.2 Consensus size: 157
20060472 CCCAATCTAA
* * * * *
20060482 GCATACGAAGTTCATTTTCA-GTCTAAGATCAGACCAGACCGGGGGTTGCGGTAGCAAGATCGGC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCA-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
*
20060546 AGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCC-AGCCGGCTGAGCG
64 AGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGA-CCGGCTGAGCG
* *
20060610 CCCGTACACCCGTTTCATGGGTTGACTTAG
128 CCCGTACACTCGTTTCGTGGGTTGACTTAG
* * * ** * * * * *
20060640 GCATAGGGAGTTAATTCCATGTTTAAGCCCCAGCCAGACCGAAGGTTGTGACAGCGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
** * * * * * * * *
20060705 GCACACAGAAGGGGACCAGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGC
65 GCACGTAG-GGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
20060770 CCGCACACTTGTTTCGTGGGTTGACTTAT
129 CCGTACACTCGTTTCGTGGGTTGACTTAG
*
20060799 GCATACGGAGTTCATTCC-TAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATC-AACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
20060863 AGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGTTGAGCAC
64 AGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
20060928 CCGTACACTCGTTTCGTGGGTTGGCTTAG
129 CCGTACACTCGTTTCGTGGGTTGACTTAG
* *
20060957 GCGTACGGTGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20060984 CATACGGAGT
Statistics
Matches: 275, Mismatches: 62, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 4 0.01
158 142 0.52
159 128 0.47
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGTAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GTACACTCGTTTCGTGGGTTGACTTAG
Found at i:20060990 original size:26 final size:26
Alignment explanation
Indices: 20060960--20061009 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20060950 GGCTTAGGCG
*
20060960 TACGGTGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
20060986 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20061010 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:20061698 original size:26 final size:26
Alignment explanation
Indices: 20061662--20061714 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20061652 GTTGACTTAG
* *
20061662 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
20061688 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20061714 G
1 G
20061715 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20062200 original size:26 final size:26
Alignment explanation
Indices: 20062163--20062215 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20062153 GTTGGCTTAG
20062163 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20062189 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
20062215 G
1 G
20062216 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20062561 original size:26 final size:26
Alignment explanation
Indices: 20062531--20062582 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20062521 GTTGACTTAG
20062531 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20062557 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20062583 TATCGGACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20063071 original size:26 final size:25
Alignment explanation
Indices: 20063032--20063083 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
20063022 GTTGGCTTAG
*
20063032 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
*
20063058 GCATACGGATTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
20063083 G
1 G
20063084 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:20063798 original size:26 final size:26
Alignment explanation
Indices: 20063762--20063814 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20063752 GTTGACTTAG
20063762 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
20063788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20063814 G
1 G
20063815 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20069945 original size:26 final size:26
Alignment explanation
Indices: 20069915--20069967 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20069905 GTTGGCTTAG
20069915 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20069941 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20069967 G
1 G
20069968 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20070329 original size:26 final size:26
Alignment explanation
Indices: 20070293--20070345 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20070283 GTTGACTTAG
20070293 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
20070319 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20070345 G
1 G
20070346 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20070607 original size:158 final size:159
Alignment explanation
Indices: 20070405--20070821 Score: 441
Period size: 158 Copynumber: 2.6 Consensus size: 159
20070395 GGACCAAGTC
* * * * * ** * *
20070405 GATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCCCGTTTCATGGTTT
1 GATCCCCGACTTGCACATTATGCATCTTCGACCGGCCCAACACCCGCACGCTCGTTTCATGG-TT
* * * * **
20070470 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGTGG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACAGAGGGTTGTGGCAGCAG
*
20070534 GACCGGCAGCACGTAGAGGGG-GATCG-AGCT
130 GACCGACAGCACGTAG-GGGGAGA-CGCAGCT
* * **
20070564 GATCCTCG-CTTGCACATTATGCCTCTTCGGTCGGCCCAACACCCGCACGCTCGTTTCATGGGTT
1 GATCCCCGACTTGCACATTATGCATCTTCGACCGGCCCAACACCCGCACGCTCGTTTCAT-GGTT
** * *
20070628 AACTTATGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGACAGAGGGTTGTGGCAGCAG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACAGAGGGTTGTGGCAGCAG
* * *
20070691 GATCGATAGCACGTAGGGGGAGACGCGGCT
130 GACCGACAGCACGTAGGGGGAGACGCAGCT
* * ** * * *
20070721 GATCCCCGACTTGCGCATTCTGCATCTTCGACCGGCTGAGCGCCCGCACGGTCGTTTCATTGGTT
1 GATCCCCGACTTGCACATTATGCATCTTCGACCGGCCCAACACCCGCACGCTCGTTTCA-TGGTT
20070786 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20070822 TACAGAGTTC
Statistics
Matches: 211, Mismatches: 39, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
156 9 0.04
157 52 0.25
158 132 0.63
159 17 0.08
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
GATCCCCGACTTGCACATTATGCATCTTCGACCGGCCCAACACCCGCACGCTCGTTTCATGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACAGAGGGTTGTGGCAGCAGG
ACCGACAGCACGTAGGGGGAGACGCAGCT
Found at i:20070824 original size:26 final size:26
Alignment explanation
Indices: 20070793--20070845 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20070783 GTTGGCTTAG
*
20070793 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20070819 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20070845 G
1 G
20070846 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20071573 original size:26 final size:26
Alignment explanation
Indices: 20071537--20071589 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20071527 GTTAACTTAG
*
20071537 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20071563 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20071589 G
1 G
20071590 ATCTGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20071879 original size:159 final size:158
Alignment explanation
Indices: 20071653--20072094 Score: 482
Period size: 159 Copynumber: 2.8 Consensus size: 158
20071643 CGGCCTGATC
* * * * *
20071653 CCCGGCTTACGTATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACTCTCATTTCGTGGGTTGGCT
1 CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTTAGCGCCCGCACGCTCATTTCGTGGGTTGGCT
* * * **
20071718 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCGAGATTG
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGAACCGAGGGTTGTGGCAGCAAGATCA
* *
20071783 ACAGCACGCAAAGAG-GGATCGACCCGAT
131 ACAGCACGC-AAGAGTGGATCAAACCGAT
* * * * * *
20071811 CCTCGGCTTGCGCATTATGCCTCTCTGGTCGGCTTAGTGCCCGCACGCTAATTTTGTGGGTTGAC
1 CC-CGGCTTGCGCATTCTGCCTCTCCGGTCGGCTTAGCGCCCGCACGCTCATTTCGTGGGTTGGC
* ** * * * **
20071876 TTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGAGGGTT-ACGCTAGCAAG
65 TTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-TCGAACCGAGGGTTGTGGC-AGCAAG
* * *
20071938 ATCAACAGCACGCAGGGGTGGATCAAACCTAT
127 ATCAACAGCACGCAAGAGTGGATCAAACCGAT
* * *
20071970 CCCTGGCTTGCACATTCTGCCTCTCCGGTCGG-TTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
1 CCC-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTT-AGCGCCCGCACGCTCATTTCGTGGGTTGG
20072034 CTTAGGCATATC-GAGTTCATTCCATGTCTAAGCCCTAGTCGAACCGAGGGTTGTGGCAGCA
64 CTTAGGCATA-CGGAGTTCATTCCATGTCTAAGCCCTAGTCGAACCGAGGGTTGTGGCAGCA
20072095 GGACTGGTAG
Statistics
Matches: 227, Mismatches: 46, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
158 14 0.06
159 205 0.90
160 8 0.04
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (158 bp):
CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTTAGCGCCCGCACGCTCATTTCGTGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGAACCGAGGGTTGTGGCAGCAAGATCA
ACAGCACGCAAGAGTGGATCAAACCGAT
Found at i:20072239 original size:26 final size:26
Alignment explanation
Indices: 20072210--20072262 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20072200 GTTGACTTAG
20072210 GCATAC-AGAGGTCATCCCCAGTCTAA
1 GCATACGA-AGGTCATCCCCAGTCTAA
* *
20072236 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
20072262 G
1 G
20072263 ATTAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:20072604 original size:26 final size:26
Alignment explanation
Indices: 20072553--20072605 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20072543 GTTGGCTTAG
*
20072553 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGACTAA
*
20072579 GCATATGGAGTTCATTCCCA-GACTAA
1 GCATACGGAGTTCATT-CCATGACTAA
20072605 G
1 G
20072606 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGACTAA
Found at i:20072623 original size:343 final size:348
Alignment explanation
Indices: 20071880--20072626 Score: 794
Period size: 343 Copynumber: 2.1 Consensus size: 348
20071870 GTTGACTTAG
* * * *
20071880 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGCTAGCAAGATCAACA
1 GCATACGAAGTTCATTCCCAGTCTAAGA-TGAACCGGATCGAGGGTTGCGATAGCAAGATCAACA
* * * ** * *
20071945 GCACGCAGGGGTGGATCAAACCTATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGCGC
65 GCACGCAGGGGTGGACCAAACCGATCCCTGGCTTGCACATTCTGCCTATCCGACCGGCTGAGCAC
* * * *
20072010 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATCGAGTTCATTCCATGTCTAAGCCCTAGTCG
130 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * ** * * *
20072075 AACCGAGGGTTGTGGCAGCAGGACTGGTAGTGGGATCGGCAGCACGCAGAGGGGGATCGGGCTGA
195 AACCAAAGGTTGTGG-AGCAGGAC-----G-GGGATCAACAGCACGCAGAGGGGGACCAGGCTAA
* * * * * *
20072140 TCCCCGACTTTTGCGTTATGTCTCTCCGACCGGCTGAGCGCCCGTACGCTCATTTCATAGGTTGA
253 TCCCAGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATAGGTTGA
20072205 CTTAGGCATACAGAGGTCATCCCCAGTCTAA
318 CTTAGGCATACAGAGGTCATCCCCAGTCTAA
* * * *
20072236 GCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGATCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATGA-ACCGGATCGAGGGTTGCGATAGCAAGATCAACA
* * * **
20072301 GCATGCAGGGG-GGACCGAACCGATCCTTGGCTTGTGCATTCTGCCTATCCGACCGGCTGAGCAC
65 GCACGCAGGGGTGGACCAAACCGATCCCTGGCTTGCACATTCTGCCTATCCGACCGGCTGAGCAC
* * *
20072365 CCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CG
130 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGTCG
* *
20072429 AAACTAAAGGTTGT-G-GCA-G-C-GGGATCAACAGTACGCAGAGGGGGACCAGGCTAATCCTCA
195 -AACCAAAGGTTGTGGAGCAGGACGGGGATCAACAGCACGCAGAGGGGGACCAGGCTAATCC-CA
* * * ** * *
20072489 G-CTTGTGCATTGTGCCTCT-CGAACCGGCTCAGCGCCTGCACGCTCGTTTTGTCGGTTGGCTTA
258 GACTTGTGCATTATGCCTCTCCG-ACCGGCTCAGCGCCCGCACGCTCATTTCATAGGTTGACTTA
* * *
20072552 GGCATACGGAGTTCAT-TCCATGTCTAA
322 GGCATACAGAGGTCATCCCCA-GTCTAA
* * * *
20072579 GCATATGGAGTTCATTCCCAGACTAAGATCGAACCGAATCGAGGGTTG
1 GCATACGAAGTTCATTCCCAGTCTAAGAT-GAACCGGATCGAGGGTTG
20072627 TGGCAGCAGG
Statistics
Matches: 327, Mismatches: 58, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
342 5 0.02
343 138 0.42
344 3 0.01
350 1 0.00
351 1 0.00
352 3 0.01
354 3 0.01
355 108 0.33
356 65 0.20
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (348 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATGAACCGGATCGAGGGTTGCGATAGCAAGATCAACAG
CACGCAGGGGTGGACCAAACCGATCCCTGGCTTGCACATTCTGCCTATCCGACCGGCTGAGCACC
CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGTCGA
ACCAAAGGTTGTGGAGCAGGACGGGGATCAACAGCACGCAGAGGGGGACCAGGCTAATCCCAGAC
TTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATAGGTTGACTTAGGCA
TACAGAGGTCATCCCCAGTCTAA
Found at i:20072637 original size:343 final size:348
Alignment explanation
Indices: 20071880--20072783 Score: 774
Period size: 355 Copynumber: 2.6 Consensus size: 348
20071870 GTTGACTTAG
* * * *
20071880 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT-ACGCTAGCAAGATCAAC
1 GCATACGAAGTTCATTCCCAGTCTAAGA-TGAACCGGATCGAGGGTTGAGGC-AGCAGGATCAAC
* * * ** * *
20071944 AGCACGCAGGGGTGGATCAAACCTATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGCG
64 AGCACGCAGGGGTGGACCAAACCGATCCCTGGCTTGCACATTCTGCCTATCCGACCGGCTGAGCA
* * * *
20072009 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATCGAGTTCATTCCATGTCTAAGCCCTAGTC
129 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGTC
* * ** * * *
20072074 GAACCGAGGGTTGTGGCAGCAGGACTGGTAGTGGGATCGGCAGCACGCAGAGGGGGATCGGGCTG
194 GAACCAAAGGTTGTGG-AGCAGGAC-----G-GGGATCAACAGCACGCAGAGGGGGACCAGGCTA
* * * * * *
20072139 ATCCCCGACTTTTGCGTTATGTCTCTCCGACCGGCTGAGCGCCCGTACGCTCATTTCATAGGTTG
252 ATCCCAGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATAGGTTG
20072204 ACTTAGGCATACAGAGGTCATCCCCAGTCTAA
317 ACTTAGGCATACAGAGGTCATCCCCAGTCTAA
* * * ** *
20072236 GCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGATCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATGA-ACCGGATCGAGGGTTGAGGCAGCAGGATCAACA
* * * **
20072301 GCATGCAGGGG-GGACCGAACCGATCCTTGGCTTGTGCATTCTGCCTATCCGACCGGCTGAGCAC
65 GCACGCAGGGGTGGACCAAACCGATCCCTGGCTTGCACATTCTGCCTATCCGACCGGCTGAGCAC
* * *
20072365 CCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CG
130 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGTCG
* *
20072429 AAACTAAAGGTTGT-G-GCA-G-C-GGGATCAACAGTACGCAGAGGGGGACCAGGCTAATCCTCA
195 -AACCAAAGGTTGTGGAGCAGGACGGGGATCAACAGCACGCAGAGGGGGACCAGGCTAATCC-CA
* * * ** * *
20072489 G-CTTGTGCATTGTGCCTCT-CGAACCGGCTCAGCGCCTGCACGCTCGTTTTGTCGGTTGGCTTA
258 GACTTGTGCATTATGCCTCTCCG-ACCGGCTCAGCGCCCGCACGCTCATTTCATAGGTTGACTTA
* * *
20072552 GGCATACGGAGTTCAT-TCCATGTCTAA
322 GGCATACAGAGGTCATCCCCA-GTCTAA
* * * * * *
20072579 GCATATGGAGTTCATTCCCAGACTAAGATCGAACCGAATCGAGGGTTGTGGCAGCAGGACCAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGAT-GAACCGGATCGAGGGTTGAGGCAGCAGGATCA--A
* * *** * *
20072644 GCAGGATTGACAGTACGTAGGGG-GGATCGGGCCGATGCCC-GGCTTGCACATTCTACCTCTCCG
63 -C---A--G-C---ACGCAGGGGTGGACCAAACCGAT-CCCTGGCTTGCACATTCTGCCTATCCG
* * * * * * * * *
20072707 ACCAGCTGAGCGCTCGTAAGCTCATTTCATGGGTTGGCTCAGGCATA-TGAGTTCATTCAATGTC
117 ACCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTC
20072771 TAAGCCCCAGTCG
182 TAAGCCCCAGTCG
20072784 GACCGAGGGT
Statistics
Matches: 443, Mismatches: 84, Indels: 43
0.78 0.15 0.08
Matches are distributed among these distances:
342 5 0.01
343 147 0.33
344 3 0.01
345 1 0.00
346 1 0.00
349 1 0.00
350 1 0.00
351 2 0.00
352 4 0.01
354 28 0.06
355 186 0.42
356 64 0.14
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (348 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATGAACCGGATCGAGGGTTGAGGCAGCAGGATCAACAG
CACGCAGGGGTGGACCAAACCGATCCCTGGCTTGCACATTCTGCCTATCCGACCGGCTGAGCACC
CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGTCGA
ACCAAAGGTTGTGGAGCAGGACGGGGATCAACAGCACGCAGAGGGGGACCAGGCTAATCCCAGAC
TTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATAGGTTGACTTAGGCA
TACAGAGGTCATCCCCAGTCTAA
Found at i:20073333 original size:26 final size:26
Alignment explanation
Indices: 20073283--20073335 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20073273 GTTGACTTAG
*
20073283 GCATACAGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
20073309 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20073335 G
1 G
20073336 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20074204 original size:26 final size:26
Alignment explanation
Indices: 20074154--20074205 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20074144 TTGGCTTACA
*
20074154 CATACAGAGTTCATTCCATGTCTAAG
1 CATACAGAGTTCATTCCATGACTAAG
*
20074180 CATACGGAGTTCATTCCCA-GACTAAG
1 CATACAGAGTTCATT-CCATGACTAAG
20074206 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATGACTAAG
Found at i:20074388 original size:196 final size:196
Alignment explanation
Indices: 20074047--20074404 Score: 461
Period size: 196 Copynumber: 1.8 Consensus size: 196
20074037 GGGTTCCGAT
* ***
20074047 AGCAGGATCGACAGCACGTAAGGGGAACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTTTGG
1 AGCAGGATCGACAGCACGCAAGGGGAACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAG
* * * *
20074112 CCGATTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTACACATACAGAGTTCATTCCATGTCT
66 CCGACTGAGCACCCGCACACTCGTATCATGGGTTGACTTACACATACAGAGTTCATACCATGTCT
*
20074177 AAGCATACGGAGTTCATTCCCAGACTAAGATCAGATCGGACCGAGGCTGGCAGCAACAAGACCAA
131 AAGCATACAGAGTTCATTCCCAGACTAAGATCAGATCGGACCGAGGCTGGCAGCAACAAGACCAA
20074242 C
196 C
* * * * * *
20074243 AGCAGGATCGACAGCACGCAGGGGGGACTGGGCTGATCCCC-GACTTGCGTATTTTACCTCTCCA
1 AGCAGGATCGACAGCACGCAAGGGGAACCGGGCCGATCCCCAG-CTTGCGCATTCTACCTCTCCA
* * * * * *
20074307 GTCGGCTGAGCGCCCGCACGCTCGTATCGTGGGTTGACTTAGC-CATACGGAGTTCATACC-TAG
65 GCCGACTGAGCACCCGCACACTCGTATCATGGGTTGACTTA-CACATACAGAGTTCATACCAT-G
* *
20074370 TTTAAGCATACAGAGTTCATTCCCAGCCTAAGATC
128 TCTAAGCATACAGAGTTCATTCCCAGACTAAGATC
20074405 GAACCAGACA
Statistics
Matches: 136, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
195 2 0.01
196 133 0.98
197 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (196 bp):
AGCAGGATCGACAGCACGCAAGGGGAACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAG
CCGACTGAGCACCCGCACACTCGTATCATGGGTTGACTTACACATACAGAGTTCATACCATGTCT
AAGCATACAGAGTTCATTCCCAGACTAAGATCAGATCGGACCGAGGCTGGCAGCAACAAGACCAA
C
Found at i:20075462 original size:26 final size:26
Alignment explanation
Indices: 20075412--20075464 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20075402 GTTGACTTAG
*
20075412 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
20075438 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20075464 G
1 G
20075465 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20075819 original size:159 final size:158
Alignment explanation
Indices: 20075445--20075934 Score: 465
Period size: 159 Copynumber: 3.1 Consensus size: 158
20075435 TAAGCATACG
* * ** **
20075445 GAGTTCATTCTCAATCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGGTAGCAC-GT
1 GAGTTCATTC-CAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
* * *
20075509 AAGGGGGATCGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACG
65 AAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACG
*
20075574 CCTGTTTAGTGGGTTGACTTAGGCATAGG
130 CCTGTTTAGTGGGTTGACTTAGGCATAGA
* * ** * * * ** *
20075603 GAGTTCAGTCCATGCCTAAGCCCCAG-TC-GAACTGAGGGTTGTGGCAGTGGGACCGACAGCACA
1 GAGTTCATTCCA-GTCTAAG-ATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGACAGCACA
* * ** * * *
20075666 CAAAGAGGGACCGGACCAATCCCCGGCTTGTGCATTCTGCCTCTCCGATTGGCTCAGCGCCTGCA
63 CAAAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCA
* *
20075731 CG-ATCGTTTCA-TGGGTTGACTTAGGCATATA
128 CGCCT-GTTT-AGTGGGTTGACTTAGGCATAGA
* *
20075762 GAGTTCATTACCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA--ACACG
1 GAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
* * * * * *
20075825 TAGGGGGATCGGGTCGGTCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGAACG
65 AAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACG
* *
20075890 CTTGCTCGTTTCGTGGGTTGGCTTAGGCATACG-
130 C---CT-GTTTAGTGGGTTGACTTAGGCATA-GA
20075923 GAGTTCATTCCA
1 GAGTTCATTCCA
20075935 TATCGAAGCA
Statistics
Matches: 259, Mismatches: 58, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 61 0.24
158 40 0.15
159 116 0.45
160 10 0.04
161 32 0.12
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACACAA
AGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGC
CTGTTTAGTGGGTTGACTTAGGCATAGA
Found at i:20076115 original size:184 final size:185
Alignment explanation
Indices: 20075763--20076119 Score: 452
Period size: 187 Copynumber: 1.9 Consensus size: 185
20075753 AGGCATATAG
* * * * *
20075763 AGTTCATTACCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAACACGTAG
1 AGTTCATTACCAGTCTAAGATCGGACCAGACCGAGCGTTGAGGCAACAGGATCGACAACACGCAG
* * * * *
20075828 GGGGATCGGGTCGGTCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGAACGCTT
66 GGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGCTCGGCTGAGCGCCCGAAC-C-T
* *
20075893 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCGAAGCATACGA
129 GCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCGAAGCATACGA
* * ** * *
20075950 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGCGTTGAGGCAACAGGATCGGTAGCATGCAG
1 AGTTCATTACCAGTCTAAGATCGGACCAGACCGAGCGTTGAGGCAACAGGATCGACAACACGCA-
* *
20076015 GGGGGA-CTGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACT-GGCTGAGCGCCCGTA-C
65 GGGGGATC-GAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG-CTCGGCTGAGCGCCCGAACC
*
20076077 -GCTCGTTTCATGGGTTGGCTTAGGCGTACGAAGTTCATTCCAT
128 TGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
20076120 GTCTAAGGCC
Statistics
Matches: 146, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
184 40 0.27
186 1 0.01
187 54 0.37
188 50 0.34
189 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (185 bp):
AGTTCATTACCAGTCTAAGATCGGACCAGACCGAGCGTTGAGGCAACAGGATCGACAACACGCAG
GGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGCTCGGCTGAGCGCCCGAACCTGC
TCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCGAAGCATACGA
Found at i:20076307 original size:26 final size:26
Alignment explanation
Indices: 20076271--20076323 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20076261 GTTCACTTAG
20076271 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20076297 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20076323 G
1 G
20076324 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20076372 original size:355 final size:355
Alignment explanation
Indices: 20075811--20076504 Score: 898
Period size: 354 Copynumber: 2.0 Consensus size: 355
20075801 TGCGGCAGCA
* * * * *
20075811 GGATCGACAACACGTAGGGGGATCGGGTCGGTCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGC
1 GGATCGACAACACGTAGGGGGATCGGGTCGATCCCTGACTTATGCATTATGCCTCTCCGATCGGC
* ** *
20075876 TGAGCGCCCGAACGCTTGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCGA
66 TGAGCACCCGAACGCTT-CTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCATATCGA
* * **
20075941 AGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGCGTTGAGGCAACAGGATCGGT
130 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGCGTTGAGGCAACAGGATCGAC
* * * * * * * * * *
20076006 AGCATGCAGGGGGGACTGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGC
195 AGCACGCAGGGGGGACCG-GCCAATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCCGAGCAC
* * * * *
20076071 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCGTACGAAGTTCATTCCATGTCTAAGGCCCAGTCT
259 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCG
*
20076136 GACCGAGGGTTGTGGCAGAAGGACCGACAGTG
324 GACCGACGGTTGTGGCAGAAGGACCGACAGTG
*
20076168 GGATCGACAGCACGTAGAGGGGGATCGGG-CTGAT-CCTCGACTTATGCATTATGCCTCTCCGAT
1 GGATCGACAACACGT--AGGGGGATCGGGTC-GATCCCT-GACTTATGCATTATGCCTCTCCGAT
* * *
20076231 CGGTTGAGCACCCGCACGC-T-T-GTTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCCA-G
62 CGGCTGAGCACCCGAACGCTTCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCAT-CCCATA
* * * * * *
20076292 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAAG-GTTGCGGCAGCAGGA
126 TCGAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-AGCGTTGAGGCAACAGGA
20076356 TCGACAGCACGCAGGGGGGACCGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCCGA
190 TCGACAGCACGCAGGGGGGACCGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCCGA
* *
20076421 GCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
255 GCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCA
20076486 GTCGGACCGACGGTTGTGG
320 GTCGGACCGACGGTTGTGG
20076505 TAGCGGGACC
Statistics
Matches: 290, Mismatches: 41, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
354 110 0.38
355 104 0.36
356 6 0.02
357 14 0.05
358 5 0.02
359 51 0.18
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (355 bp):
GGATCGACAACACGTAGGGGGATCGGGTCGATCCCTGACTTATGCATTATGCCTCTCCGATCGGC
TGAGCACCCGAACGCTTCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCATATCGAA
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGCGTTGAGGCAACAGGATCGACA
GCACGCAGGGGGGACCGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCCGAGCACCC
GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGA
CCGACGGTTGTGGCAGAAGGACCGACAGTG
Found at i:20076617 original size:151 final size:154
Alignment explanation
Indices: 20076297--20076788 Score: 464
Period size: 151 Copynumber: 3.2 Consensus size: 154
20076287 CCCAGTCTAA
* ** * * * *
20076297 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGACTGAAGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACTGGACCGACGGTTGCAGCAGCAGGACCGAC
* * * * * * *
20076361 AGCACGCAGGGGGGACC-GGCCAATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCCGAGCAC
65 AGCACACAGGGGGG-CCAGGCCGATACCC-GCTTGCGCATTATGCCTCTCC-ATC-GCAGAGCAC
* *
20076425 CCGCACGCCCGTTTCATGGGTTGGCTTAG
126 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
20076454 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGACGGTTGTGGTAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACTGGACCGACGGTTGCAGCAGCAGGACCGAC
* * *
20076518 AGCACACAGAGGGGGACCAGGCCGATCCCCGACTTGCGCTTTATGCCTCT-C-T-G-AG-GC-TC
65 AGCACACAG-GGGGG-CCAGGCCGATACCCG-CTTGCGCATTATGCCTCTCCATCGCAGAGCACC
* *
20076577 CGCACGCTCGTTTCGTGGGTTGACTTAT
127 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
20076605 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACTGGACCGACGGTTGCAGCAGCAGGACCGAC
* * * *
20076669 AGCACGCAGGGGGGCCAGGCCGATACCCGCTTTCGCATTCTGCCTCTCCAGTCGGCTGAGCACCC
65 AGCACACAGGGGGGCCAGGCCGATACCCGCTTGCGCATTATGCCTCTCCA-TC-GCAGAGCACCC
20076734 GCACGCTCGTTTCGTGGGTTGGCTTAG
128 GCACGCTCGTTTCGTGGGTTGGCTTAG
*
20076761 GCATACGGAGTTCATTCCAAGTCTAAGA
1 GCATACGGAGTTCATTCCATGTCTAAGA
20076789 TTTTGAGTGA
Statistics
Matches: 272, Mismatches: 47, Indels: 33
0.77 0.13 0.09
Matches are distributed among these distances:
148 15 0.06
149 15 0.06
150 10 0.04
151 79 0.29
152 2 0.01
153 2 0.01
154 2 0.01
155 2 0.01
156 52 0.19
157 53 0.19
158 15 0.06
159 25 0.09
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACTGGACCGACGGTTGCAGCAGCAGGACCGACA
GCACACAGGGGGGCCAGGCCGATACCCGCTTGCGCATTATGCCTCTCCATCGCAGAGCACCCGCA
CGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20077460 original size:26 final size:26
Alignment explanation
Indices: 20077430--20077482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20077420 GTTGACTTAG
20077430 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20077456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20077482 G
1 G
20077483 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20078111 original size:326 final size:314
Alignment explanation
Indices: 20077453--20078123 Score: 712
Period size: 326 Copynumber: 2.1 Consensus size: 314
20077443 ATCCCCAGTC
* *
20077453 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAAAAGCAGGATCG
1 TAAGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAAAAGCAGGATCG
** *
20077518 ACAGCACGCAGGAGGGACCGGGCCGATCCCTAACTTGTGCATTCTGCCCTTTTGGCCGGCTGAGC
65 ACAGCACGCAGGAGGGACCGGGCCGATCCCTAACTTGCACATTCTGCCCTTCTGGCCGGCTGAGC
* *
20077583 GCCCACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGTCG
130 ACCCACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* ** *
20077648 GACCTATGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGATTAGGTCGATCCCCGGCTTGC
195 GACCGATGGTTGTGGCAGCAAGACCGGCAGCACGCAGAGGGGGATCAGGTCGATCCCCGGCTTGC
* * *
20077713 ACATTATGCCGCTCTGGCTGGCTCAATGCCTGAACGCTCGTTTCGTGGGTTGACT
260 ACATTATGCCGCTCCGCCTGGCTCAATGCCCGAACGCTCGTTTCGTGGGTTGACT
* *** *
20077768 TAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGCGGCAGTAGGATCG
1 TAAGCATACG-AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAAAAGCAGGATCG
* * ** * * *
20077833 ATAGCACGTAGG-GGGATTGGGTCGAT-CCTAGCTTGCACATTCTG-CCTCTCTGGCCGGTTGAG
65 ACAGCACGCAGGAGGGACCGGGCCGATCCCTAACTTGCACATTCTGCCCT-TCTGGCCGGCTGAG
* *
20077895 CACCCAC-ACGCTTGTTTCGT-GGTTGGCTTAGGCATATGGTGTTCATTCCATGTCTAAGCCCCA
129 CACCCACGAC-C--GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * *
20077958 -TCCGTATCGA-GGTTTGTGGCAGTAAGACCGGGCAGCGAGATCGGCAGCAAGTAAGGGCGATC-
191 GT-CGGACCGATGG-TTGTGGCAGCAAGACC-GGCAGC---A-C-GCAG--AG---GGG-GATCA
* * * * * * *
20078020 GGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGACCT-GCTGAGTGCCCGTACGCTCGTTTCG
242 GGTC-GATCCCCGGCTTGCACATTATGCCGCTCCG-CCTGGCTCAATGCCCGAACGCTCGTTTCG
20078084 TGGGTTGACT
305 TGGGTTGACT
* *
20078094 TAGGCATACAGAGTTCATCCCCAGTCTAAG
1 TAAGCATAC-GAGTTCATTCCCAGTCTAAG
20078124 CATATGGAGT
Statistics
Matches: 293, Mismatches: 41, Indels: 33
0.80 0.11 0.09
Matches are distributed among these distances:
312 5 0.02
313 37 0.13
314 70 0.24
315 79 0.27
318 1 0.00
319 1 0.00
320 4 0.01
322 2 0.01
325 6 0.02
326 85 0.29
327 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (314 bp):
TAAGCATACGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAAAAGCAGGATCGA
CAGCACGCAGGAGGGACCGGGCCGATCCCTAACTTGCACATTCTGCCCTTCTGGCCGGCTGAGCA
CCCACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACCGATGGTTGTGGCAGCAAGACCGGCAGCACGCAGAGGGGGATCAGGTCGATCCCCGGCTTGCA
CATTATGCCGCTCCGCCTGGCTCAATGCCCGAACGCTCGTTTCGTGGGTTGACT
Found at i:20078133 original size:26 final size:26
Alignment explanation
Indices: 20078097--20078175 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20078087 GTTGACTTAG
*
20078097 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20078123 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20078149 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20078175 G
1 G
20078176 ATCGGATCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20078860 original size:26 final size:26
Alignment explanation
Indices: 20078830--20078882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20078820 GTTGACTTAG
20078830 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
20078856 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
20078882 G
1 G
20078883 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:20079098 original size:709 final size:708
Alignment explanation
Indices: 20078131--20079433 Score: 1644
Period size: 709 Copynumber: 1.8 Consensus size: 708
20078121 AAGCATATGG
* * * * *
20078131 AGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGTTA
1 AGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGACCGAGGTTA
* ** * * * * * *
20078196 CGGTAGTAGGATCGGTAGCACGTAGGGGGGACCGGGCCAATCCCCGGCTTCGCATTCTGTCTCTC
66 CGGTAGCAGGATCAATAGCACGCAGGAGGGACCGGGCCAATCCCCAGATTCACATTCTGCCTCTC
***** * ** * * *
20078261 TGGTTGGTTGAGTGCCCGCATGCCCATTTCGTCGGTTGGCTTAGTCATAGGCAGTTGATTCCATG
131 CAACCGGCTGAGCACCCGCATGCCCATTTCATCGGTTGGCTTAGCCATAGGCAGTTCATTCCATG
* * *
20078326 TCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGTGATCAGGC
196 TCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCAGGC
* ** * * * * * *
20078391 CGATCCCTGGCTTGTGCATTATGCCTCTTCGATCGGCTCAGTACCCGCACGCTCGTTTCGTGGGT
261 CGATCCCTGACTTGTGCATTACACCTCTCCGACCAGCTCAGCACCCGCACACTCGTTTCGAGGGT
* *
20078456 TGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTATGGCAGCAG
326 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAGC-G
** ** * * *
20078521 G-ATCGGTAGTACGCAGGGGGGT-TCGGCT-GATCCCTGACTTGTGCATTCTGCCTTTTCGACCG
390 GTATCGACAACACGC-GGGAGGTATCGGCTCGATCCCTGACTTGCGCATTCTGCCTTTCCGACCG
* ** * *
20078583 GTTGAGCGCCCGTACGTTCATTTCGTGGGTTGGCTTAGGCATAC-GACGTTCATTCCAT-TACTA
454 GTTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGA-GTTCATTCCATGT-CTA
* * * * *
20078646 AGCATATAGAGATCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAGCAGCAGC
517 AGCATACAGAGATCAATCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCAGCACCAGC
20078711 AACAGGATCGACATCGTACAGGGGGGACCGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGA
582 AACAGGATCGACATCGTACAGGGGGGACCGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGA
20078776 CTAGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGA
647 CTAGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGA
*
20078838 AGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGAATCAGACCGAGGGTT
1 AGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGACCGA-GGTT
** * * * * *
20078903 GTGGTAGCAGGATCAATAGCACGCATGAGGGATCGGGCCGATCCTCATATTGCACATTCTGCCTC
65 ACGGTAGCAGGATCAATAGCACGCAGGAGGGACCGGGCCAATCCCCAGATT-CACATTCTGCCTC
** * *
20078968 TCCAACCGGCTGAGCACCCGCATGTTCATTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCA
129 TCCAACCGGCTGAGCACCCGCATGCCCATTTCATCGGTTGGCTTAGCCATAGGCAGTTCATTCCA
* * * *
20079033 TGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGTGGGACCGACAGCACGCAGAGGGGGATCAG
194 TGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCAG
* * * * * *
20079098 GCTGATCCTTGATTTGTGCATTACACCTCTCCGGCCAGCTCAGCACCCGTACACTTGTTTCGAGG
259 GCCGATCCCTGACTTGTGCATTACACCTCTCCGACCAGCTCAGCACCCGCACACTCGTTTCGAGG
** * *
20079163 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGC
324 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAGC
* * * *
20079228 GGTATCGACAACACGCTGGAGGTATCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTTTCCGACCG
389 GGTATCGACAACACGCGGGAGGTATCGGCTCGATCCCTGACTTGCGCATTCTGCCTTTCCGACCG
*
20079293 GTTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAG
454 GTTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * ** * * * *
20079358 CATACGGAGTTCAATCCCATTCTAAGATCGGGTTGGACCAAGGGTTGCGGCAGTAGGACCAGCAG
519 CATACAGAGATCAATCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCAGCACCAGCAA
20079423 CAGGATCGACA
584 CAGGATCGACA
20079434 GCACGCAGGA
Statistics
Matches: 492, Mismatches: 97, Indels: 11
0.82 0.16 0.02
Matches are distributed among these distances:
707 54 0.11
708 48 0.10
709 242 0.49
710 145 0.29
711 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (708 bp):
AGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGACCGAGGTTA
CGGTAGCAGGATCAATAGCACGCAGGAGGGACCGGGCCAATCCCCAGATTCACATTCTGCCTCTC
CAACCGGCTGAGCACCCGCATGCCCATTTCATCGGTTGGCTTAGCCATAGGCAGTTCATTCCATG
TCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCAGGC
CGATCCCTGACTTGTGCATTACACCTCTCCGACCAGCTCAGCACCCGCACACTCGTTTCGAGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAGCGG
TATCGACAACACGCGGGAGGTATCGGCTCGATCCCTGACTTGCGCATTCTGCCTTTCCGACCGGT
TGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TACAGAGATCAATCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCAGCACCAGCAACA
GGATCGACATCGTACAGGGGGGACCGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGACTAG
CCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGA
Found at i:20079381 original size:26 final size:26
Alignment explanation
Indices: 20079331--20079383 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20079321 GTTGGCTTAG
* *
20079331 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
20079357 GCATACGGAGTTCAATCCCAT-TCTAA
1 GCATACGGAGTTC-ATCCCATGTCTAA
20079383 G
1 G
20079384 ATCGGGTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:20079728 original size:26 final size:26
Alignment explanation
Indices: 20079699--20079751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20079689 GTTGACTTAG
20079699 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20079725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20079751 G
1 G
20079752 ATCAGGTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20080071 original size:26 final size:26
Alignment explanation
Indices: 20080035--20080085 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20080025 TGGCTTAGGT
20080035 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACGGAGTTCATTCCTA-GTCTAAGC
20080061 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
20080086 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGC
Found at i:20080428 original size:26 final size:26
Alignment explanation
Indices: 20080399--20080451 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20080389 GTTAACTTAG
*
20080399 GCATACGGAGTTCATCTC-CAGTCTAA
1 GCATACGGAATTCAT-TCACAGTCTAA
20080425 GCATACGGAATTCATTCACAGTCTAA
1 GCATACGGAATTCATTCACAGTCTAA
20080451 G
1 G
20080452 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCACAGTCTAA
Found at i:20080740 original size:158 final size:158
Alignment explanation
Indices: 20080565--20080917 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
20080555 TGCACGTCCG
* * * * *
20080565 TTTCGTGGGTTGGCTTAGTCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGATCGGATCGAGGG
* * * * *
20080628 TTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGATCGGGCCGATCCT-TGCTTGCGCATTATGC
64 TTGTGGCAGCAGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTACGCATTATGC
20080692 CTCTCCGATCGGCTCAATGCCCGAACACTCA
128 CTCTCCGATCGGCTCAATGCCCGAACACTCA
*
20080723 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGATCGAGGGTT
* * * * * *
20080788 TTGGCAGTAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTTTGCCTC
66 GTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTC
* * * ** * * *
20080853 TTCGGTCGGCTGAGCGCCCCGCACGCTCG
131 TCCGATCGGCTCAATG-CCCGAACACTCA
* * * * *
20080882 TTCCGTGCGTTGGCTAAGGCATACGGAGTTCATTCC
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
20080918 ATGTTTAAGC
Statistics
Matches: 161, Mismatches: 30, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
157 20 0.12
158 98 0.61
159 43 0.27
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGATCGAGGGTT
GTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTC
TCCGATCGGCTCAATGCCCGAACACTCA
Found at i:20080952 original size:26 final size:26
Alignment explanation
Indices: 20080895--20080952 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
20080885 CGTGCGTTGG
20080895 CTAAGGCATACGGAGTTCATTCCATGT
1 CTAA-GCATACGGAGTTCATTCCATGT
* *
20080922 TTAAGCATATGGAGTTCATTCCCA-GT
1 CTAAGCATACGGAGTTCATT-CCATGT
20080948 CTAAG
1 CTAAG
20080953 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCATGT
Found at i:20081619 original size:139 final size:139
Alignment explanation
Indices: 20081371--20081632 Score: 319
Period size: 139 Copynumber: 1.9 Consensus size: 139
20081361 GGGGGGACCA
* * * * * *
20081371 GGCCGATCCCCAGCTTGCACATTCTGCCTCTTCGGTCGGTTGAGTGCCTGCACACCCGTTTCATG
1 GGCCAATCCCCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAGTGCCTCCACACCCATTTCATG
** * ** * *
20081436 GGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAG
66 GGTTGACTTAGACATACAGAGTTCATTCCATGTCTAAGACCCAACCGGACCAAGGGTTATGGCAG
20081501 CGGGGATCG
131 CGGGGATCG
* * * *
20081510 GGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGCCTCCACGCTCATTTCATG
1 GGCCAATCCCCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAGTGCCTCCACACCCATTTCATG
* * * *
20081575 GGTTGACTTATACGTACAGAGTTCATTCCCA-GTCTAAGATCCAACTGGACCAAGGGTT
66 GGTTGACTTAGACATACAGAGTTCATT-CCATGTCTAAGACCCAACCGGACCAAGGGTT
20081633 GCGACAGCAA
Statistics
Matches: 101, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
139 98 0.97
140 3 0.03
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.26
Consensus pattern (139 bp):
GGCCAATCCCCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAGTGCCTCCACACCCATTTCATG
GGTTGACTTAGACATACAGAGTTCATTCCATGTCTAAGACCCAACCGGACCAAGGGTTATGGCAG
CGGGGATCG
Found at i:20088377 original size:26 final size:26
Alignment explanation
Indices: 20088341--20088393 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20088331 GTTGACTTAG
20088341 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20088367 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20088393 G
1 G
20088394 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20088561 original size:26 final size:26
Alignment explanation
Indices: 20088525--20088577 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20088515 GTTAGCTTAG
*
20088525 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
20088551 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
20088577 G
1 G
20088578 ATTGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:20088604 original size:184 final size:184
Alignment explanation
Indices: 20088277--20088680 Score: 528
Period size: 184 Copynumber: 2.2 Consensus size: 184
20088267 TTGATCCTCG
* ** * * *
20088277 GCTTGCGCATCCTATCTCTCTGGTCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
* * *
20088342 CATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
66 CATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC
*
20088407 GAGGGTGGCGGCAGCAGGATCGACAGCACGTAGGAGGGACCGAGCCGATCCCCA
131 GAGGGTGGCGGCAGCAGGATCGACAGCACGCAGGAGGGACCGAGCCGATCCCCA
*
20088461 GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACATTCGTTTCGTGGGTT-AGCTTAG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGA-CTTAG
* *
20088525 GCATACGGAGTTCAT-TCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAT-TGAACCGA
65 GCATACGGAGTTCATCCCCA-GTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG-ACCGA
** * * * * **
20088588 ATGGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCTG
128 ACCGAGGGTGGCGGCAGCAGGATCGACAGCACGCAGGAGGGACCGAGCCGATCCCCA
** *
20088645 GCTTATGCATTCTGCCTCTCCGG-CTGGTTGAGCGCC
1 GCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCGCC
20088681 TACATGCCCG
Statistics
Matches: 192, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
183 6 0.03
184 186 0.97
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (184 bp):
GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC
GAGGGTGGCGGCAGCAGGATCGACAGCACGCAGGAGGGACCGAGCCGATCCCCA
Found at i:20088893 original size:26 final size:26
Alignment explanation
Indices: 20088841--20088893 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20088831 GTTGGCTTAG
*
20088841 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
20088867 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
20088893 G
1 G
20088894 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:20089157 original size:159 final size:158
Alignment explanation
Indices: 20088867--20089210 Score: 429
Period size: 159 Copynumber: 2.2 Consensus size: 158
20088857 CCATGTCTAA
* * * ** * *
20088867 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAAATCGAGGGTTGTAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTACAGCAGCAAGATCGACA
**
20088932 GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCC
66 GCACGCAGGGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCC
* * *
20088997 CGCACGCTCTTTTTATTGATTGGCTTAG
131 CGCACGCTCGTTTGATGGATTGGCTTAG
* * * *
20089025 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGGCAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTACAGCAGCAAGATCGACA
* * * * * * *
20089090 GGACGCGTGGGGGGATCAGACCGATCCCCGGCTTGTGCATTTTGCCTCTCCGGGCGGTTGAGCGC
66 GCACGC-AGGGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGC
*
20089155 CCGCACGCTCGTTTGATGGGTTGGCTTAG
130 CCGCACGCTCGTTTGATGGATTGGCTTAG
**
20089184 GCATACAAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
20089211 CATACAGAGC
Statistics
Matches: 158, Mismatches: 26, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 62 0.39
159 96 0.61
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTACAGCAGCAAGATCGACA
GCACGCAGGGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCC
CGCACGCTCGTTTGATGGATTGGCTTAG
Found at i:20089236 original size:26 final size:26
Alignment explanation
Indices: 20089184--20089236 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20089174 GTTGGCTTAG
* *
20089184 GCATACAAAGTTCATTCCATGTCTAA
1 GCATACAAAGCTCATTCCATGTATAA
*
20089210 GCATACAGAGCTCATTCCCA-GTATAA
1 GCATACAAAGCTCATT-CCATGTATAA
20089236 G
1 G
20089237 ATCGACTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGCTCATTCCATGTATAA
Found at i:20089582 original size:26 final size:26
Alignment explanation
Indices: 20089552--20089603 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20089542 TGACTTAGGC
*
20089552 ATACGGAGTTCATCCCCAATCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
* *
20089578 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
20089604 TCGGATCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGA
Found at i:20089923 original size:26 final size:26
Alignment explanation
Indices: 20089893--20089945 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20089883 TTTGACTTTT
20089893 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20089919 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20089945 G
1 G
20089946 ATCGAACCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20090437 original size:26 final size:26
Alignment explanation
Indices: 20090401--20090453 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20090391 GTTGGCTTAG
20090401 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
* *
20090427 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
20090453 G
1 G
20090454 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:20090999 original size:159 final size:157
Alignment explanation
Indices: 20090636--20091128 Score: 345
Period size: 159 Copynumber: 3.1 Consensus size: 157
20090626 CCTAGTCTAA
* * * * * * *
20090636 GCATACGGAGTTTATTCCCAGTCAAAGATC-GAACCGGACCGAGGGTAGCGACAGCAGGATCGAC
1 GCATACGGAATTCATTCCCAATCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAAGATCGAC
* * * * ** * * * ** * * *
20090700 AGCATGC-AGGGGGGACCGGGTTGATCCCTGGCTTGTGCATTTTGCCTCTCCGACCGGTTAAGTG
65 AACATGCAAAGGGGAACCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGTC-GCTCAGCG
* * * * * *
20090764 CCCGTGCGCCCATTTCATGGGTTGGCTTAA
129 CCCGTACGCTC-GTTCATGGGATGACTTAG
* * ** * ** * *
20090794 GCATAGGGAGTTCATT-CC-ATGCCTAAGCCCCAG-CCAGATTGAGGGTTGGGGTAGC-AGTATC
1 GCATACGGAATTCATTCCCAAT--CTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAAG-ATC
* * * * * *
20090855 GGCAGCATGCAAAAGGGG-ATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCTGGCTAC-CT
62 GACAACATGC-AAAGGGGAACCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGG-T-CGCT
* *
20090918 CAGCGCCCGTACGTTCGTTTCGTGGGATGACTTAG
124 CAGCGCCCGTACGCTCG-TTCATGGGATGACTTAG
20090953 GCATACGGAATTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAATTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * *
20091018 ACATGCAAGGGGGAACCAGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGTGC
66 ACATGCAAAGGGGAACCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGTC-GCTCAGCGC
* *
20091083 CCGTACGCTCGTTCATGGGTTGGCTTAG
130 CCGTACGCTCGTTCATGGGATGACTTAG
*
20091111 GCATACGGAGTTCATTCC
1 GCATACGGAATTCATTCC
20091129 ATGTCTAAGC
Statistics
Matches: 257, Mismatches: 61, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 4 0.02
158 86 0.33
159 153 0.60
160 10 0.04
161 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAATTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
ACATGCAAAGGGGAACCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGTCGCTCAGCGCC
CGTACGCTCGTTCATGGGATGACTTAG
Found at i:20091124 original size:710 final size:710
Alignment explanation
Indices: 20089870--20091180 Score: 1715
Period size: 710 Copynumber: 1.8 Consensus size: 710
20089860 GTGCTGGCAT
* * ** *
20089870 GCTCGTTTCATGGTTTGACTTTTGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATT
* * * *
20089935 CCCAGTCTAAGATCGAACCTATCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGGCAGCACG
66 CCCAGTCAAAGATCGAACCGACCGAGGGTT---G-AGCA-G--CAGCAGCAGGATCGACAGCACG
* * *
20090000 TAGGGGGGACCGGGCTGATCCGCGGCTTCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACG
124 CAGGGGGGACCGGGCTGATCCGCGGCTTCGCATTCTGCCTCTCCGACCAGCTAAGCGCCCGCACG
** * * *
20090065 CCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
189 CCCATTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGATCGAG
* * * * *
20090130 GGTTGTGGCAGCGAGATCGGTAGCACGTAAGGGGGACTGAGCTGATCCCCGACTTGCGCATTATG
254 GGTTGGGGCAGCGAGATCGGCAGCACGAAAAGGGGACTGAGCCGATCCCCGACTTGCGCATTATG
** * * *
20090195 CCTCTCCGGCGGGCTCATCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
319 CCTCTCCGGCGACCTCAGCACCCGAACGCTCGTTTCGTGGGATGACTTAGGCATACGGAATTCAT
* * * * *
20090260 TCAATCTAAGATTAGACTAGACCGAGGGTTGCGGCAGCAAGATTGATAGCACACAAGGGGGACCA
384 TCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAACACACAAGGGGGACCA
* * * * * *
20090325 GGCCGGTCCTCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTAAGCACCCATACGCTCATTTTATG
449 GGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGCTAAGCACCCATACGCTCAGTTCATG
* *
20090390 GGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
514 GGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* *
20090455 TCAGACCGGATCGAGGGTTGCGACAGTAGAACCAGCAACAGGATCGATAACATGTAAGGGGGATC
579 TCAGACCAGACCGAGGGTTGCGACAGTAGAACCAGCAACAGGATCGATAACATGTAAGGGGGATC
20090520 GGGCTGATCCTCGACTTACGTATTCTGCCTCTCCGGCCAGCCTCTTCGGCCAGCTGTGCGCCCGC
644 GGGCTGATCCTCGACTTACGTATTCTGCCTCTCCGGCCAGCCTCTTCGGCCAGCTGTGCGCCCGC
20090585 CC
709 CC
* *
20090587 GCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCC-TAGTCTAAGCATACGGAGTTTAT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAT-GTCTAAGCATACGGAGTTCAT
*
20090651 TCCCAGTCAAAGATCGAACCGGACCGAGGG-T-AGC-G-A-CAGCAGGATCGACAGCATGCAGGG
65 TCCCAGTCAAAGATCGAACC-GACCGAGGGTTGAGCAGCAGCAGCAGGATCGACAGCACGCAGGG
* * * * * * **
20090711 GGGACCGGGTTGATCC-CTGGCTTGTGCATTTTGCCTCTCCGACCGGTTAAGTGCCCGTGCGCCC
129 GGGACCGGGCTGATCCGC-GGCTT-CGCATTCTGCCTCTCCGACCAGCTAAGCGCCCGCACGCCC
*
20090775 ATTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGATTGAGGGT
192 ATTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGATCGAGGGT
* * * * *
20090840 TGGGGTAGC-AGTATCGGCAGCATGCAAAAGGGGA-TCGGGCCGATCCCCGGCTTGTGCATTATG
257 TGGGGCAGCGAG-ATCGGCAGCACG-AAAAGGGGACT-GAGCCGATCCCCGACTTGCGCATTATG
* * * * *
20090903 CCTCTCTGGCTACCTCAGCGCCCGTACGTTCGTTTCGTGGGATGACTTAGGCATACGGAATTCAT
319 CCTCTCCGGCGACCTCAGCACCCGAACGCTCGTTTCGTGGGATGACTTAGGCATACGGAATTCAT
* **
20090968 TCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAACATGCAAGGGGGAA
384 T--CAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAACACACAAGGGGG-A
* * * * ** *
20091033 CCAGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGTACGCTC-GTTC
446 CCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGCTAAGCACCCATACGCTCAGTTC
* *
20091097 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCTAGTCTA
511 ATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTA
20091162 AGATCAGACCAGACCGAGG
576 AGATCAGACCAGACCGAGG
20091181 ATTATGGTAG
Statistics
Matches: 508, Mismatches: 76, Indels: 27
0.83 0.12 0.04
Matches are distributed among these distances:
705 1 0.00
706 43 0.08
707 109 0.21
708 86 0.17
710 133 0.26
711 50 0.10
712 3 0.01
716 1 0.00
717 75 0.15
718 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (710 bp):
GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATT
CCCAGTCAAAGATCGAACCGACCGAGGGTTGAGCAGCAGCAGCAGGATCGACAGCACGCAGGGGG
GACCGGGCTGATCCGCGGCTTCGCATTCTGCCTCTCCGACCAGCTAAGCGCCCGCACGCCCATTT
CATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGATCGAGGGTTGGG
GCAGCGAGATCGGCAGCACGAAAAGGGGACTGAGCCGATCCCCGACTTGCGCATTATGCCTCTCC
GGCGACCTCAGCACCCGAACGCTCGTTTCGTGGGATGACTTAGGCATACGGAATTCATTCAATCT
AAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAACACACAAGGGGGACCAGGCCGAT
CCCCGACTTGTGCATTCTGCCTCTCCGGCCGGCTAAGCACCCATACGCTCAGTTCATGGGTTGGC
TTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
AGACCGAGGGTTGCGACAGTAGAACCAGCAACAGGATCGATAACATGTAAGGGGGATCGGGCTGA
TCCTCGACTTACGTATTCTGCCTCTCCGGCCAGCCTCTTCGGCCAGCTGTGCGCCCGCCC
Found at i:20091142 original size:26 final size:26
Alignment explanation
Indices: 20091111--20091163 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20091101 GTTGGCTTAG
*
20091111 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
20091137 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
20091163 G
1 G
20091164 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:20091337 original size:26 final size:26
Alignment explanation
Indices: 20091307--20091359 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20091297 ATTGGCTTCG
20091307 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20091333 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20091359 G
1 G
20091360 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20092261 original size:158 final size:157
Alignment explanation
Indices: 20091969--20092543 Score: 507
Period size: 158 Copynumber: 3.6 Consensus size: 157
20091959 ACCACCCGTT
* * ** * * * * **
20091969 CGATCCTCGGCTTGCGCATCCTGTCTC-TCTGGTCGGCTGAGCGTCCGTACGCTCGTTTCGTGCA
1 CGATCCTCAGCTTGCGCATTCTACCTCTTC-GATCGGCTGAGCGCCCGCACACTCGTTTCGTGGG
*
20092033 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC-AGACCGAGGG-TGACGGTAG
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCGA-ACCGAGGGTTG-CGGTAG
* *
20092096 TAAGATCGACAGCATGCAAGAGGGATCGAGC
127 CAAGATCGACAGCACGCAAGAGGGATCGAGC
** * * *
20092127 CGATCCTTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACACCCGTTTCGTGGGT
1 CGATCCTCAGCTTGCGCATTCTACCTCTTCGATCGGCTGAGCGCCCGCACACTCGTTTCGTGGGT
* * * ** *
20092192 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAGGCCCTAGCCGAACCGAGGGTTGTGGTAGCA
66 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGCCGAACCGAGGGTTGCGGTAGCA
* * * *
20092256 GGATCGGCAGCACGCAGAGAGGGTTCGCGC
129 AGATCGACAGCACGCA-AGAGGGATCGAGC
* * * * * * *
20092286 CAATCCTCAGCTTGCGCGTTAC-ACC-CCTCCAGTCGGCTCAGCACCCACACACTCGTTTCGTGG
1 CGATCCTCAGCTTGCGCATT-CTACCTCTTCGA-TCGGCTGAGCGCCCGCACACTCGTTTCGTGG
* * * *
20092349 GTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTACGGGAGC
64 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGCCGAACCGAGGGTTGCGGTAGC
* * * * *
20092414 AAGATCGACAGCACGTAGGGGGGACCGAGT
128 AAGATCGACAGCACGCAAGAGGGATCGAGC
* * * * * * * * * *
20092444 CGGTCCCCAGCTTGTGTATTCTACCTTTTCGGTCGGTTGAGCGCCCGTACGCTCGTTTCATGGGT
1 CGATCCTCAGCTTGCGCATTCTACCTCTTCGATCGGCTGAGCGCCCGCACACTCGTTTCGTGGGT
*
20092509 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
66 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
20092544 CATACGGTGT
Statistics
Matches: 330, Mismatches: 75, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
157 7 0.02
158 191 0.58
159 128 0.39
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
CGATCCTCAGCTTGCGCATTCTACCTCTTCGATCGGCTGAGCGCCCGCACACTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGCCGAACCGAGGGTTGCGGTAGCAAG
ATCGACAGCACGCAAGAGGGATCGAGC
Found at i:20092567 original size:26 final size:26
Alignment explanation
Indices: 20092517--20092569 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20092507 GTTGGCTTAG
*
20092517 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
20092543 GCATACGGTGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20092569 G
1 G
20092570 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20093195 original size:159 final size:159
Alignment explanation
Indices: 20092879--20093744 Score: 609
Period size: 159 Copynumber: 5.3 Consensus size: 159
20092869 CCACACGCCT
** * * *** * *
20092879 GTTTCATGGGTTGGCTTAGGCATAGGGCGTTCTTTCCATGTCTAACCCCCA-A-CTAGATCGAGG
1 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA-GATCAGATC-GGACCGAGG
* * ** * * * * *
20092942 GTTGTGGCAGCGGGACCGACATCATGCAGAGGGGGACCAGGCCGAT-CCTCGGCTTGTGCATTTT
64 GTTGTGGCAGCAGGACCGACAGCACACAGAAGGGGACCGGGCTGATCCCT-GGCTTGCGCATTAT
* * * * *
20093006 GCCTCTCCAG-CTGGCTCAGTGCCCGAACGCTC
128 ACCTCTCCGGTC-GGCTTAGCGCCCGGACGCTC
* * * * * *
20093038 GTTTCGTGGGTTGACTTAGGCATACAGATTTTATTCCCA-GTCTAAGATCGGATCGGACCGAGTG
1 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGG
* ** * * * *
20093102 TTGTGGCAGTAGGATTGATAGCACATAGAAGGGGACCGGGCTGGTCCCTGGCTTGCGCATTCTAC
65 TTGTGGCAGCAGGACCGACAGCACACAGAAGGGGACCGGGCTGATCCCTGGCTTGCGCATTATAC
*
20093167 CTCTCCGGTCGGCTTAGCGCCTGGACGCTC
130 CTCTCCGGTCGGCTTAGCGCCCGGACGCTC
**
20093197 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGG
* * * * * * * *
20093261 TTGTGGTAGCAGGACCAGCAACGGGATCGACAACCCGCAAAGGGGGATCGAGTTGATCCCCGGTT
65 TTGTGGCAGCAGGACC-G--AC---AGC-AC-A-CAG--AA-GGGGACCGGGCTGATCCCTGGCT
* * * ** *
20093326 TGCGCATTATGCCTCTCCAGCCGGCATCTCTGACCAACTGGGCGCCCACACGCCC
118 TGCGCATTATACCTCTCCGGTCGG---CT-T-----A----GCGCCCGGACGCTC
** *
20093381 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAT-AGCT-GGACCGAGG
1 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG--ATCAGATCGGACCGAGG
* * ** * * *
20093444 GTTGTGGTAGCAGGACCGACATCATGCAGAGGGGGACCAGG-TCGATCCCTGACTTGCGCATTAT
64 GTTGTGGCAGCAGGACCGACAGCACACAGAAGGGGACCGGGCT-GATCCCTGGCTTGCGCATTAT
* * *
20093508 GCCTCTCCGGTTGGCTTAGCGCCCGAACGCTC
128 ACCTCTCCGGTCGGCTTAGCGCCCGGACGCTC
* * * *
20093540 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGTG
1 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGG
* * * * * * *
20093604 TTGCGGCAGTAGGATCGACAGCACACAGGAGGGGACCGGGCTGGTCCCTGGCTTGCACATTCTAC
65 TTGTGGCAGCAGGACCGACAGCACACAGAAGGGGACCGGGCTGATCCCTGGCTTGCGCATTATAC
* * * *
20093669 CTCTCCGATCGACTGAGCGCCCGCACGCTC
130 CTCTCCGGTCGGCTTAGCGCCCGGACGCTC
*
20093699 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
20093745 CATACGGAGT
Statistics
Matches: 553, Mismatches: 114, Indels: 80
0.74 0.15 0.11
Matches are distributed among these distances:
157 2 0.00
158 9 0.02
159 342 0.62
160 15 0.03
162 1 0.00
163 1 0.00
165 2 0.00
166 2 0.00
167 1 0.00
168 2 0.00
169 2 0.00
170 2 0.00
171 38 0.07
172 36 0.07
173 1 0.00
174 2 0.00
175 3 0.01
177 1 0.00
178 3 0.01
180 1 0.00
181 2 0.00
183 1 0.00
184 82 0.15
185 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGT
TGTGGCAGCAGGACCGACAGCACACAGAAGGGGACCGGGCTGATCCCTGGCTTGCGCATTATACC
TCTCCGGTCGGCTTAGCGCCCGGACGCTC
Found at i:20093558 original size:502 final size:502
Alignment explanation
Indices: 20092644--20093745 Score: 1603
Period size: 502 Copynumber: 2.2 Consensus size: 502
20092634 ATCGAGCCGA
* * ** ** *
20092644 TCCCCGGCTTGCACATTCTGCCTCTCCGGTTAGCTGAGCGCCCGCATACTCATTTCGTGGGTTGG
1 TCCCTGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* *
20092709 CTTAGGCATTCGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGAC
66 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGAC
* * *
20092774 CAACAGCGGGATCGACAGCCCGCAAAGGGGAACCGAGCTGATCCCCGGCTTACGCAATATGCCTT
131 CAACAACGGGATCGACAACCCGCAAAGGGGAACCGAGCTGATCCCCGGCTTACGCAATATGCCTC
* * * * * * *
20092839 TTCGGCTGGTATCTCTGGCCGACTGAGCGCCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAG
196 TCCAGCCGGCATCTCTGACCAACTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAG
* * * * *
20092904 GGCGTTCTTTCCATGTCTAACCCCCAACTAGATCGAGGGTTGTGGCAGCGGGACCGACATCATGC
261 GGAGTTCATTCCATGTCTAACCCACAACTAGACCGAGGGTTGTGGCAGCAGGACCGACATCATGC
* * * *
20092969 AGAGGGGGACCAGGCCGATCCTCGGCTTGTGCATTTTGCCTCTCCAGCTGGCTCAGTGCCCGAAC
326 AGAGGGGGACCAGGCCGATCCTCGACTTGCGCATTATGCCTCTCCAGCTGGCTCAGCGCCCGAAC
* * * * *
20093034 GCTCGTTTCGTGGGTTGACTTAGGCATACAGATTTTATTCCCAGTCTAAGATCGGATCGGACCGA
391 GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * *
20093099 GTGTTGTGGCAGTAGGATTGATAGCACATAGAAGGGGACCGGGCTGG
456 GTGTTGCGGCAGTAGGATCGACAGCACACAGAAGGGGACCGGGCTGG
* * * * *
20093146 TCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTTAGCGCCTGGACGCTCGTTTCATGGGTTGG
1 TCCCTGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* *
20093211 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGAC
66 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGAC
* * * * * * *
20093276 CAGCAACGGGATCGACAACCCGCAAAGGGGGATCGAGTTGATCCCCGGTTTGCGCATTATGCCTC
131 CAACAACGGGATCGACAACCCGCAAAGGGGAACCGAGCTGATCCCCGGCTTACGCAATATGCCTC
*
20093341 TCCAGCCGGCATCTCTGACCAACTGGGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAG
196 TCCAGCCGGCATCTCTGACCAACTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAG
* * * * *
20093406 GGAGTTCATTCCATGTCTAAGCCATAGCTGGACCGAGGGTTGTGGTAGCAGGACCGACATCATGC
261 GGAGTTCATTCCATGTCTAACCCACAACTAGACCGAGGGTTGTGGCAGCAGGACCGACATCATGC
* * * *
20093471 AGAGGGGGACCAGGTCGATCC-CTGACTTGCGCATTATGCCTCTCCGGTTGGCTTAGCGCCCGAA
326 AGAGGGGGACCAGGCCGATCCTC-GACTTGCGCATTATGCCTCTCCAGCTGGCTCAGCGCCCGAA
*
20093535 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
390 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
*
20093600 AGTGTTGCGGCAGTAGGATCGACAGCACACAGGAGGGGACCGGGCTGG
455 AGTGTTGCGGCAGTAGGATCGACAGCACACAGAAGGGGACCGGGCTGG
* *
20093648 TCCCTGGCTTGCACATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
1 TCCCTGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
20093713 CTTAGGCATACAGAGTTCATTCCATGTCTAAGC
66 CTTAGGCATACAGAGTTCATTCCATGTCTAAGC
20093746 ATACGGAGTT
Statistics
Matches: 529, Mismatches: 70, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
501 1 0.00
502 528 1.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (502 bp):
TCCCTGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGAC
CAACAACGGGATCGACAACCCGCAAAGGGGAACCGAGCTGATCCCCGGCTTACGCAATATGCCTC
TCCAGCCGGCATCTCTGACCAACTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAACCCACAACTAGACCGAGGGTTGTGGCAGCAGGACCGACATCATGC
AGAGGGGGACCAGGCCGATCCTCGACTTGCGCATTATGCCTCTCCAGCTGGCTCAGCGCCCGAAC
GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
GTGTTGCGGCAGTAGGATCGACAGCACACAGAAGGGGACCGGGCTGG
Found at i:20093754 original size:26 final size:26
Alignment explanation
Indices: 20093718--20093770 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20093708 GTTGGCTTAG
20093718 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20093744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20093770 G
1 G
20093771 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20093978 original size:26 final size:26
Alignment explanation
Indices: 20093927--20093979 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20093917 GTTGACTTAG
*
20093927 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
20093953 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
20093979 G
1 G
20093980 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:20094140 original size:26 final size:26
Alignment explanation
Indices: 20094111--20094163 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20094101 GTTGGCTTAG
*
20094111 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
*
20094137 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
20094163 G
1 G
20094164 TGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:20094665 original size:165 final size:164
Alignment explanation
Indices: 20094263--20094696 Score: 408
Period size: 165 Copynumber: 2.7 Consensus size: 164
20094253 AGCACACAGG
* * * * * * *
20094263 GGGGACC-GGTCCAATCCTTGGGTTACGCATTCTGCCTCTCCGACCGGCGGAGGGCCCGCACACC
1 GGGGACCAGGT-CGATCCTCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACT
* *
20094327 CGTTTCATGGGTTG----GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCCAGTCGGATC
65 CGTTTCATGGGTTGCTTAGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCCAGTCGGACC
*
20094388 GAGGGTTGTGGCAGTGGGATCGACAGCACACAAAA
130 GAGGGTTGTGGCAGTAGGATCGACAGCACACAAAA
* * * * * * * * *
20094423 GGGGATCAGGTCGATCCTCTGCTTACGCACTATGCCTCTCCGACCGGCTCAGCACCCACACGCTC
1 GGGGACCAGGTCGATCCTCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACTC
* ** * *
20094488 TTTTTGTGGGTTGACTTAAGCGTAGGCATAGGGAGTTCATTCGATGTCTATG-CCCCAG-CTGGA
66 GTTTCATGGGTTG-CTT-AGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCCAGTC-GGA
** * *
20094551 CCGAGGGTTGTGGCAGTAGGATC-AGCAGCATGCATAG
128 CCGAGGGTTGTGGCAGTAGGATCGA-CAGCACACAAAA
* * *
20094588 GGGGACC-GGGCTGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACACT
1 GGGGACCAGGTC-GATCCTCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACT
* * * *
20094652 CGTTCCATGGGTTG----GCTTAGGCATACGGAGTTCATTACATGTCTA
65 CGTTTCATGGGTTGCTTAGCGTAGGCATAGGGAGTTCATTCCATGTCTA
20094697 TGCATACGGA
Statistics
Matches: 218, Mismatches: 46, Indels: 21
0.76 0.16 0.07
Matches are distributed among these distances:
159 27 0.12
160 57 0.26
161 3 0.01
164 5 0.02
165 96 0.44
166 30 0.14
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (164 bp):
GGGGACCAGGTCGATCCTCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACTC
GTTTCATGGGTTGCTTAGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCCAGTCGGACCG
AGGGTTGTGGCAGTAGGATCGACAGCACACAAAA
Found at i:20095428 original size:26 final size:26
Alignment explanation
Indices: 20095398--20095449 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20095388 TTGACTTAGC
*
20095398 CATACGGAGTTC-ATCCCCAGTCTAAG
1 CATACGAAGTTCAAT-CCCAGTCTAAG
20095424 CATACGAAGTTCAATCCCAGTCTAAG
1 CATACGAAGTTCAATCCCAGTCTAAG
20095450 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
CATACGAAGTTCAATCCCAGTCTAAG
Found at i:20095897 original size:158 final size:158
Alignment explanation
Indices: 20095464--20095925 Score: 500
Period size: 159 Copynumber: 2.9 Consensus size: 158
20095454 GACCAAACTG
** * * **
20095464 AGGGTTACGACAGCAGGATCGACAGCACGCAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTC
1 AGGGTTACGACAGCAGGATCGACAGCACATAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTC
* * * * * *
20095529 TACCTCTTCGGTCGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGAAGTTC
66 TGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
*
20095594 ATTCCATGTCTAAGCCCTAGCCGGACCA
131 ATTCCATGTCTAAGCCCGAGCCGGACCA
** * * * * *
20095622 AGGGTTGTGACAACAAGACCGACAGCACATAGAGGGGGATCAGGCCGAT-CCTCGGCTTGCACAT
1 AGGGTTACGACAGCAGGATCGACAGCACATAG-GGGGGATCGGGCCGATCCCT-GGCTTGCGCAT
* * ** * * * *
20095686 TATGCCTCTCCGG-CTGGCTCAACGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAC
64 TCTGCCTCTCCGGTC-GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
** * *
20095750 TTCATTTCCA-GTCTAAGATCG-GACTGGATCA
128 TTCA-TTCCATGTCTAAGCCCGAG-CCGGACCA
* * * * * *
20095781 AGGGTTACGATAGCAGGATTGACAGCACATAGGGGGGATTGGGTCGGTCCCTGGCTTACGCATTC
1 AGGGTTACGACAGCAGGATCGACAGCACATAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTC
*
20095846 TGCCTCTCCGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
66 TGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
20095911 ATTCCATGTCTAAGC
131 ATTCCATGTCTAAGC
20095926 ATACGGAGTT
Statistics
Matches: 241, Mismatches: 55, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 114 0.47
159 117 0.49
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
AGGGTTACGACAGCAGGATCGACAGCACATAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTC
TGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCGAGCCGGACCA
Found at i:20095934 original size:26 final size:26
Alignment explanation
Indices: 20095898--20095950 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20095888 GTTGGCTTAG
20095898 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20095924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20095950 G
1 G
20095951 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20096315 original size:26 final size:26
Alignment explanation
Indices: 20096279--20096331 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20096269 GTTGACTTAG
20096279 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
20096305 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20096331 G
1 G
20096332 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20096499 original size:26 final size:26
Alignment explanation
Indices: 20096463--20096515 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20096453 GTTGACTTAG
20096463 GCATACAGAGTT-AATCCTCAGTCTAA
1 GCATACAGAGTTCAATCCT-AGTCTAA
* *
20096489 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCAATCCTAGTCTAA
20096515 G
1 G
20096516 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCTAGTCTAA
Found at i:20096550 original size:184 final size:184
Alignment explanation
Indices: 20096249--20096605 Score: 457
Period size: 184 Copynumber: 1.9 Consensus size: 184
20096239 CGGTTGAGCC
* * * *
20096249 CCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGA
1 CCCGAACGCTCGTTTAATGGGTTGACTTAGGCATACAGAGTTAATCCCCAGTCTAAGCATACGGA
* * * *
20096314 GTTCGTTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAACAGGATCGACAGCA-CGTAG
66 GTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCGACAACAGGATCGACAGCATCGAAG
* * *
20096378 GGGAGACCGGGCCGATCCTCGGCTTATGCATTATGCCTCTCCGGTCGACTCAATG
131 GGG-GACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGTCGACTCAATG
** *
20096433 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATCCTCAGTCTAAGCATACGGA
1 CCCGAACGCTCGTTTAATGGGTTGACTTAGGCATACAGAGTTAATCCCCAGTCTAAGCATACGGA
* ** ** * *
20096498 GTTCATTCCTAGTCTAAGATCGAACC-AGACCAAGGGTTGCGGTAGTAGGATCGGCAGCATGGAA
66 GTTCATTCCCAGTCTAAGATCGAACCGA-ACCAAGGGTTGCGACAACAGGATCGACAGCATCGAA
* * * *
20096562 GGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGG
130 GGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGG
20096606 CCGGCTAAGC
Statistics
Matches: 146, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
183 1 0.01
184 139 0.95
185 6 0.04
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
CCCGAACGCTCGTTTAATGGGTTGACTTAGGCATACAGAGTTAATCCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCGACAACAGGATCGACAGCATCGAAG
GGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGTCGACTCAATG
Found at i:20096673 original size:184 final size:183
Alignment explanation
Indices: 20096266--20096674 Score: 441
Period size: 184 Copynumber: 2.2 Consensus size: 183
20096256 GCTCGTTTAA
* * *
20096266 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCGTTCCCAGTCTAA
1 TGGGTTGACTTAGGCATAAGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
20096331 GATCGGACCGAACCGAGGGTTGCGACAACAGGATCGACAGCACGTAGGGGAGACCGGGCCGATCC
65 GATCGAACCGAACCAAGGGTTGCGACAACAGGATCGACAGCACGAAGGGGAGACCGGGCCGATCC
* * * * * * *
20096396 TCGGCTTATGCATTATGCCTCTCCGGTCGACTCAATGCCCGAACGCTCGTTTCG
130 CCGACTTACGCATTATGCCTCTCCGGCCGACTCAATGCCCCAACGCCCATTTCG
* *
20096450 TGGGTTGACTTAGGCATACA-GAGTTAATCCTCAGTCTAAGCATACGGAGTTCATTCCTAGTCTA
1 TGGGTTGACTTAGGCATA-AGGAGTTCATCC-CAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** ** * * * *
20096514 AGATCGAACC-AGACCAAGGGTTGCGGTAGTAGGATCGGCAGCATGGAAGGGG-GATCGGGTCGA
64 AGATCGAACCGA-ACCAAGGGTTGCGACAACAGGATCGACAGCA-CGAAGGGGAGACCGGGCCGA
* * * *
20096577 TCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCT-AA-GCGCCCACCCGCCCATTTCG
127 TCCCCGACTTACGCATTATGCCTCTCCGGCCGACTCAATGC-CCCA-ACGCCCATTTCG
* * *
20096634 TGGGTTGGCTTAGGTATAAGGAGTTCATTCCATGTCTAAGC
1 TGGGTTGACTTAGGCATAAGGAGTTCATCCCA-GTCTAAGC
20096675 CACAGTCGGA
Statistics
Matches: 186, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
182 2 0.01
183 11 0.06
184 167 0.90
185 6 0.03
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (183 bp):
TGGGTTGACTTAGGCATAAGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGAACCGAACCAAGGGTTGCGACAACAGGATCGACAGCACGAAGGGGAGACCGGGCCGATCCC
CGACTTACGCATTATGCCTCTCCGGCCGACTCAATGCCCCAACGCCCATTTCG
Found at i:20097760 original size:26 final size:26
Alignment explanation
Indices: 20097724--20097776 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20097714 GTTGGCTTAT
20097724 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20097750 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20097776 G
1 G
20097777 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20097949 original size:26 final size:26
Alignment explanation
Indices: 20097920--20097972 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20097910 GTTGACTTAG
*
20097920 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
20097946 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20097972 G
1 G
20097973 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20098306 original size:159 final size:156
Alignment explanation
Indices: 20097946--20098330 Score: 403
Period size: 159 Copynumber: 2.4 Consensus size: 156
20097936 CCCAGTCTAA
* * * *
20097946 GCATACAGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCGAATCGGACCGAGGGCTGCGACAGCAGGATCGACA
* * * * *
20098011 GCACGCAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
65 GCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCACCC
* * *
20098076 GCATGCCCGTTTCGTGGCTTGGCTTAG
130 GAACGCACGTTTCGTGGCTTGGCTTAG
* * * ** * * * * * * *
20098103 GGATAGGGAGTTCAGTCCATGTCTAAGCCCCAACCGAACCGAGGGCTGTGGCAGCGGGATCGATA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGAATCGGACCGAGGGCTGCGACAGCAGGATCGACA
*
20098168 GCACGCAGAGGGGGACCGGG-TCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTCAGCA
65 GCACGC--AGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCA
* *
20098232 CCCGAACGCACGTTTCGTGGGTTGTCTTAG
127 CCCGAACGCACGTTTCGTGGCTTGGCTTAG
* * * * ** *
20098262 GCATACGGAGTTTATTCCCAGTCTAAGATCGAATTGGACCGAGGGTTACGGTAGCAGAATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGAATCGGACCGAGGGCTGCGACAGCAGGATCGACA
20098327 GCAC
65 GCAC
20098331 CCAGACCCCG
Statistics
Matches: 179, Mismatches: 44, Indels: 8
0.77 0.19 0.03
Matches are distributed among these distances:
156 4 0.02
157 50 0.28
158 1 0.01
159 121 0.68
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.20
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGAATCGGACCGAGGGCTGCGACAGCAGGATCGACAG
CACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCACCCG
AACGCACGTTTCGTGGCTTGGCTTAG
Found at i:20098417 original size:26 final size:26
Alignment explanation
Indices: 20098367--20098419 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20098357 GTTGGCTTAG
* *
20098367 GCATACGGGGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20098393 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20098419 G
1 G
20098420 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20098607 original size:26 final size:26
Alignment explanation
Indices: 20098577--20098629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20098567 GTTGATTTAG
*
20098577 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
* *
20098603 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
20098629 G
1 G
20098630 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTAA
Found at i:20099295 original size:26 final size:26
Alignment explanation
Indices: 20099265--20099317 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20099255 TTTGGCTTAG
*
20099265 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20099291 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20099317 G
1 G
20099318 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20100013 original size:26 final size:26
Alignment explanation
Indices: 20099977--20100029 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20099967 GTTGACTTAG
*
20099977 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20100003 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20100029 G
1 G
20100030 ATCTAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20100190 original size:26 final size:26
Alignment explanation
Indices: 20100161--20100213 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20100151 GTTGGCTTAG
20100161 GCATACGGAGTTCATTCCACA-TCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
20100187 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20100213 G
1 G
20100214 AGTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20100879 original size:26 final size:26
Alignment explanation
Indices: 20100849--20100901 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20100839 GTTGACTTAG
*
20100849 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20100875 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20100901 G
1 G
20100902 ATCGAATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20101183 original size:159 final size:157
Alignment explanation
Indices: 20100969--20101377 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 157
20100959 TCGATCCTCA
* * * *
20100969 ACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
1 ACTTGCGCATTATGCCTCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * *
20101034 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGAACTGAGGGTTGTGGCAGC-GAGA-CTGAC
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAGC-GAACCGAGGGTTGCGACAGCAG-GATC-GAC
* * *
20101097 AGCACGTAGAGGGGGATCGAGCCTATCCCCG
128 AGCACGCAG-GGGGGACCGAGCCAATCCCCG
* * * * * ** **
20101128 GCTTGCGCATTATGCCTCTTTGGCCGGCTCAGTGCCCGAACGCTCATTTTGTGGGTTGAATTAGG
1 ACTTGCGCATTATGCCTCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * ** * *
20101193 CATACGAAATTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACAG
66 CATACGGAGTTCATTCCATGTCTAAG-CCCCAGCGAACCGAGGGTTGCGACAGCAGGATCGACAG
* *
20101258 CACGCAGGGGGGACCGGGTCAATCCCCG
130 CACGCAGGGGGGACCGAGCCAATCCCCG
** * * *
20101286 ACTTGTTCATTATGCCTCTCTGGCCGGTTGAGTGCTCGCACGCTCGTTTCATTGGTTGGCTTAGG
1 ACTTGCGCATTATGCCTCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
20101351 CATACGGAGTTCATTCCATGTCTAAGC
66 CATACGGAGTTCATTCCATGTCTAAGC
20101378 ATACAGAGCT
Statistics
Matches: 199, Mismatches: 48, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 91 0.46
159 103 0.52
160 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
ACTTGCGCATTATGCCTCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCCAGCGAACCGAGGGTTGCGACAGCAGGATCGACAGC
ACGCAGGGGGGACCGAGCCAATCCCCG
Found at i:20101350 original size:158 final size:158
Alignment explanation
Indices: 20100875--20101376 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 158
20100865 CCCAGTCTAA
* * * * **
20100875 GCATACGAAGTTCATTCTC-AGTCTAAGATCGAATAGGACTGAGGGTTGTGATAGAATGATCGGT
1 GCATACGAAGTTCATTC-CAAGTCTAAGATCGAATCGGACTGAGGGTTGTGACAGCAGGATCGAC
* * * * * * * *
20100939 AGCACGCAGTGGGGATTGGGTCGATCCTCAACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTCTGGCCGGCTGAGTGC
*
20101004 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * ** * * *
20101033 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCAGAACTGAGGGTTGTGGCAGC-GAGA-CTG
1 GCATACGAAGTTCATTCCAAGTCTAAGATCGAATC-GGACTGAGGGTTGTGACAGCAG-GATC-G
* * * * * * *
20101095 ACAGCACGTAGAGGGGGATCGAGCCTATCCCCGGCTTGCGCATTATGCCTCTTTGGCCGGCTCAG
63 ACAGCACGCAG-GGGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTCTGGCCGGCTGAG
* * ** **
20101160 TGCCCGAACGCTCATTTTGTGGGTTGAATTAG
127 TGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
20101192 GCATACGAAATTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGAAGTTCATTCCAAGTCTAAGATCGAATCGGACTGAGGGTTGTGACAGCAGGATCGACA
* ** * *
20101257 GCACGCAGGGGGGACCGGGTCAATCCCCGACTTGTTCATTATGCCTCTCTGGCCGGTTGAGTGCT
66 GCACGCAGGGGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTCTGGCCGGCTGAGTGCC
*
20101322 CGCACGCTCGTTTCATTGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
* *
20101350 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCAAGTCTAAG
20101377 CATACAGAGC
Statistics
Matches: 266, Mismatches: 70, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 4 0.02
158 140 0.53
159 117 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCAAGTCTAAGATCGAATCGGACTGAGGGTTGTGACAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTCTGGCCGGCTGAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Done.