Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 187 of 402
Found at i:20101381 original size:26 final size:26
Alignment explanation
Indices: 20101350--20101402 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20101340 GTTGGCTTAG
* *
20101350 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
20101376 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
20101402 G
1 G
20101403 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:20101611 original size:26 final size:25
Alignment explanation
Indices: 20101560--20101637 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 25
20101550 GTTGACTTAG
20101560 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
* *
20101585 GCATACAGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
20101611 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
20101637 G
1 G
20101638 ATCAGACCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
25 14 0.30
26 32 0.68
27 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:20101963 original size:26 final size:26
Alignment explanation
Indices: 20101927--20101979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20101917 GTTGGCTTAG
**
20101927 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20101953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20101979 G
1 G
20101980 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20103121 original size:26 final size:26
Alignment explanation
Indices: 20103085--20103137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20103075 CGAGGCTTAG
20103085 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20103111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20103137 G
1 G
20103138 ATCGAATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20103990 original size:26 final size:26
Alignment explanation
Indices: 20103954--20104006 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20103944 GTTGACTTAG
20103954 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20103980 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20104006 G
1 G
20104007 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20104273 original size:158 final size:158
Alignment explanation
Indices: 20103980--20104486 Score: 515
Period size: 158 Copynumber: 3.2 Consensus size: 158
20103970 CCCAGTCTAA
** * * *
20103980 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGG
* * * * * *
20104043 CAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTCCGCCGCTCTGACCGGCTGAGCG
65 CAGCACACAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCCGGCTGAGCG
*
20104108 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
130 -CCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
20104138 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTC-GCAGCGGGATCGG
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGAACCGAGGGTTG-CAGCAGCAGGATCGG
* * * * * * *
20104201 TAGCACACAGAGGGGGACCGGGTTGATCCCCGGCTTACGCATTATGCCTCTCCGTCCGGATCAGC
65 CAGCACACAG-GGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCCGGCTGAGC
* *
20104266 GCTGCACGCTCATTTCGTGGGTTGACTTAG
129 GCCGCACGCTCATTTCGTGGGTTGGCTTAG
** * **** * * ** *
20104296 GCATATAGAGTTCATTCCCAT-TCCAAG-ATTGGACCGAATCGAGGGTTACAATAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGG
* * *
20104359 CAGCACGCAGGGGGGGACCAGGTCGATCCCCGACTTGCGCTTTCTGCCTCTCCGAT-CGGCTGAG
65 CAGCACACA-GGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG-TCCGGCTGAG
* * *
20104423 CACCCGCACACTCGTTTCGTGGGTTGGCTTAG
128 C-GCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
20104455 GCATACGGAGATCATTCCATGTCTAAGCCCCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCA
20104487 TTTGGACCGA
Statistics
Matches: 279, Mismatches: 58, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 179 0.64
159 95 0.34
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGGC
AGCACACAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCCGGCTGAGCGC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20105010 original size:26 final size:26
Alignment explanation
Indices: 20104981--20105033 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20104971 GTTGGCTTAG
20104981 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20105007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20105033 G
1 G
20105034 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20105739 original size:26 final size:26
Alignment explanation
Indices: 20105703--20105755 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20105693 GTTGACTTAG
*
20105703 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20105729 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20105755 G
1 G
20105756 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20106058 original size:159 final size:158
Alignment explanation
Indices: 20105765--20106124 Score: 354
Period size: 159 Copynumber: 2.3 Consensus size: 158
20105755 GATCGAACTG
* * * * * *
20105765 GACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAGGGGGACCGAGTCGATCCCCGACTTGCG
1 GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAAGGGGGACCGAGCCAATCCCCGACTTCCG
* * * * *
20105830 CATTCTGCCTCTTCGGTCGGTTGAGCACCCGCGAGCCCGTTTCGTGGGTTGGCTTAGGCATAAGG
66 CATTATGCCTCTTCGGTCGGCTCAGCACCCGCGAGCCCGTTTCGTGGGTTGACTTAGGCATAAGA
*
20105895 AGTTCATTCC-ATGTCTAAGCCCCAGCCA
131 AGTTCAATCCTA-GTCTAAGCCCCAGCCA
* * * * *
20105923 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGGGCCAATCCTCGACTTCC
1 GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCA-AGGGGGACCGAGCCAATCCCCGACTTCC
* * *
20105988 TCATTATGCCTCTTCGGTCGGCTCAGCGCCCGC-A-CACTCG-TTCTGTGGGTTGACTTAGGCTT
65 GCATTATGCCTCTTCGGTCGGCTCAGCACCCGCGAGC-C-CGTTTC-GTGGGTTGACTTAGGCAT
** *
20106050 ACA-AAGTTCAATCCTAGTCTAAG-ATCAGACCG
127 A-AGAAGTTCAATCCTAGTCTAAGCCCCAG-CCA
* * * ** *
20106082 GACCGAGGGTTGCGACAGTAGGATTGACAGCACGCAGGGGGGA
1 GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAAGGGGGA
20106125 TCAAGCCCAT
Statistics
Matches: 164, Mismatches: 31, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.01
158 45 0.27
159 116 0.71
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (158 bp):
GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAAGGGGGACCGAGCCAATCCCCGACTTCCG
CATTATGCCTCTTCGGTCGGCTCAGCACCCGCGAGCCCGTTTCGTGGGTTGACTTAGGCATAAGA
AGTTCAATCCTAGTCTAAGCCCCAGCCA
Found at i:20106869 original size:26 final size:26
Alignment explanation
Indices: 20106829--20106884 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
20106819 TGGGTTGACT
*
20106829 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAATC
*
20106855 TAAGCATAC-GAAGTTCATTCCCAATC
1 TAAGCATACAG-AGTTCATCCCCAATC
20106881 TAAG
1 TAAG
20106885 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAATC
Found at i:20107431 original size:26 final size:26
Alignment explanation
Indices: 20107397--20107447 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20107387 TGACTTAGGA
20107397 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
* *
20107423 ATACTGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
20107448 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:20107856 original size:158 final size:157
Alignment explanation
Indices: 20107542--20107840 Score: 393
Period size: 158 Copynumber: 1.9 Consensus size: 157
20107532 CCCCGGTCGG
* * *
20107542 CTGAGCACCCACACCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCA
1 CTGAGCACCCACACCTCATTTCATGGGTTGACTTAGGCATACAGAGTCCATCCTCAGTCTAAGCA
* **
20107607 TACAGAGTTCATTCCCTATCTAAGATCGAACCGGACCGAGGGTTACAGCAGCAGGATCGATAGCA
66 TACAGAGTTCATTCCCTACCTAAGATCGAACCAAACCGAGGGTTACAGCAGCAGGATCGATAGCA
** *
20107672 CGTAGGAGGGACCAGGCCGATCCCCGA
131 CACAGGAGGGACCAGGCCGATACCCGA
* * * * *
20107699 CTGAGCGCCCATACGCTCATTTCTTGGGTTGACTTAGGCATACAGTGTCCATCCTCAGTCTAGGC
1 CTGAGCACCCACAC-CTCATTTCATGGGTTGACTTAGGCATACAGAGTCCATCCTCAGTCTAAGC
* * * * *
20107764 ATACAGAGTTTATTCCC-AGCCTAAGATCGAACCAAATCGAGGGTTGCGGTAGCAGGATCGATAG
65 ATACAGAGTTCATTCCCTA-CCTAAGATCGAACCAAACCGAGGGTTACAGCAGCAGGATCGATAG
*
20107828 CACACAGGGGGGA
129 CACACAGGAGGGA
20107841 TCGAGCTTGT
Statistics
Matches: 121, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
157 13 0.11
158 108 0.89
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (157 bp):
CTGAGCACCCACACCTCATTTCATGGGTTGACTTAGGCATACAGAGTCCATCCTCAGTCTAAGCA
TACAGAGTTCATTCCCTACCTAAGATCGAACCAAACCGAGGGTTACAGCAGCAGGATCGATAGCA
CACAGGAGGGACCAGGCCGATACCCGA
Found at i:20107956 original size:26 final size:26
Alignment explanation
Indices: 20107920--20107972 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20107910 GTTAGCTTAG
20107920 GCATAAGGAGTTCATTCCCAGACTAA
1 GCATAAGGAGTTCATTCCCAGACTAA
* *
20107946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGACTAA
20107972 G
1 G
20107973 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGACTAA
Found at i:20108073 original size:184 final size:184
Alignment explanation
Indices: 20107695--20108121 Score: 463
Period size: 184 Copynumber: 2.3 Consensus size: 184
20107685 AGGCCGATCC
* * * * *
20107695 CCGACTGAGCGCCCATACGCTCATTTCTTGGGTTGACTTAGGCATACA-GTGTCCA-TCCTCAGT
1 CCGACTGAGCGCCCGTACGCTCATTTCATGGGTTG-CTTAGGCATA-AGGAGTTCATTCCTCAGA
* * **
20107758 CTAGGCATACAGAGTTTATTCCCAGCCTAAGATCGAACCAAATCGAGGGTTGCGGTAGCAGGATC
64 CTAAGCATACAGAGTTCATTCCCAGCCTAAGATCGAACCAAATCGAGGGTTGCGACAGCAGGATC
* * * * *
20107823 GATAGCACACAGGGGGGATCGAGCTTGTACCCGAATTATGCATTCTGCCTCTCCGG
129 GATAGCACACAGAGGGGACCGAGCTAGTACCCGAATTATGCATTCTGCATCTCCGA
*
20107879 CC-AGCTGAGCGCCCGTACGCTCATTTCGTGGGTTAGCTTAGGCATAAGGAGTTCATTCC-CAGA
1 CCGA-CTGAGCGCCCGTACGCTCATTTCATGGGTT-GCTTAGGCATAAGGAGTTCATTCCTCAGA
* * * * *
20107942 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGTAGGATC
64 CTAAGCATACAGAGTTCATTCCCAGCCTAAGATCGAACCAAATCGAGGGTTGCGACAGCAGGATC
* ** ** * *
20108007 GGTAGCACGTAGAGGGGACC-AGAC-AG-ATCCTCGGCTTGTGCATTTTGCATCTCCGA
129 GATAGCACACAGAGGGGACCGAG-CTAGTA-CC-CGAATTATGCATTCTGCATCTCCGA
* * *
20108063 CCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
1 CCGACTGAGCGCCCGTACGCTCATTTCATGGGTT-GCTTAGGCATAAGGAGTTCATTCC
20108122 ATGTCTAAGC
Statistics
Matches: 204, Mismatches: 31, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
182 1 0.00
183 7 0.03
184 191 0.94
185 5 0.02
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
CCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGCTTAGGCATAAGGAGTTCATTCCTCAGACT
AAGCATACAGAGTTCATTCCCAGCCTAAGATCGAACCAAATCGAGGGTTGCGACAGCAGGATCGA
TAGCACACAGAGGGGACCGAGCTAGTACCCGAATTATGCATTCTGCATCTCCGA
Found at i:20108436 original size:159 final size:157
Alignment explanation
Indices: 20107946--20108437 Score: 538
Period size: 158 Copynumber: 3.1 Consensus size: 157
20107936 CCCAGACTAA
* * * * **
20107946 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
20108011 GCACGTAGAGGGGACCAGACAGATCCTCGGCTTGTGCATTTTGCATCTCCGACCGACTGAGCGCC
66 GCATGCAGAGGGGACCGGACCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTGAGCGCC
20108076 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTT-GCTTAG
* * ** * * *
20108104 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCTAGCCGGACCAAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCGA
* ** ** * * * * * *
20108167 CAGCATGCAGAGGGGATCGGGTCGATCCCCGGCTTGCACAATATGCCTCTCCGGCTGGCTCAGTG
64 CAGCATGCAGAGGGGACCGGACCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTGAGCG
* * **
20108232 CCCGTACGCTCCTTTTGTGGGTTGACTTAG
129 CCCGCACGCTCGTTTCATGGGTTG-CTTAG
*
20108262 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
20108327 GCATGGAGAGGGGGACCGGACCCATCCCCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGCGC
66 GCATGCAGA-GGGGACCGGACCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTGAGCGC
20108392 CCGCACGCTCGTTTCATGGGTTCGCTTAG
130 CCGCACGCTCGTTTCATGGGTT-GCTTAG
*
20108421 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
20108438 TATGTAAGCA
Statistics
Matches: 263, Mismatches: 64, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
157 6 0.02
158 172 0.65
159 84 0.32
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGAGGGGACCGGACCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGCTTAG
Found at i:20109055 original size:158 final size:159
Alignment explanation
Indices: 20108762--20109076 Score: 465
Period size: 158 Copynumber: 2.0 Consensus size: 159
20108752 TCCGGTCGGT
* * *
20108762 TGAGCTCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
1 TGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
*
20108827 TAAAGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCAGCAGCAGGATCGACAGCA
66 TAAAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCA
20108892 CGCAGGGGG-GACCGGG-CTGATCCCCGAC
131 CGCAGGGGGTGACCGGGTCT-ATCCCCGAC
* * *
20108920 TGAGCGCCCATACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCC
1 TGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * ** *
20108985 TACAGTGTTCATTCCCAGTCTAAGATCGGATC-GAACCGAGGGTTGCAGCAGCAGGATCGACAGC
66 TAAAGAGTTCATTCCCAGTCTAAGATCAAACCAG-ACCGAGGGTTGCAGCAGCAGGATCGACAGC
* *
20109049 ATGCAGGGGGTGACTGGGTCTATCCCCG
130 ACGCAGGGGGTGACCGGGTCTATCCCCG
20109077 GCTTGTGCAT
Statistics
Matches: 140, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
157 1 0.01
158 124 0.89
159 13 0.09
160 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (159 bp):
TGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TAAAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCA
CGCAGGGGGTGACCGGGTCTATCCCCGAC
Found at i:20109189 original size:25 final size:26
Alignment explanation
Indices: 20109140--20109191 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20109130 GGTTGGTTAG
*
20109140 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
20109166 GCATACGGAGTTCA-TCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20109191 G
1 G
20109192 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20109325 original size:183 final size:185
Alignment explanation
Indices: 20108941--20109340 Score: 427
Period size: 183 Copynumber: 2.2 Consensus size: 185
20108931 ACGCTTGTTT
* * * * *
20108941 CATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCCTACAGTGTTCATTCCCAGTCT
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCT
* * ** * * *
20109006 AAGATCGGATCGAACCGAGGGTTGCAGCAGCAGGATCGACAGCATGCAGGGGGTGACTGGGTCTA
66 AAGATCGGACCGAACCGAGGGTTACAGCAGCAGGATCGACAGCACACAGGGAGTGACTAGGTCGA
* * * * * * * * * *
20109071 TCCCCGGCTTGTGCATTTTGCCTCTCCGATCGGTTGAACGCCCGCATGCTCGTTT
131 TCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAACACCCGCACGCCCGTTC
* * *
20109126 CGTGGGTTGG-TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TCCCAATCT
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCT
* **
20109189 AAGATCGGACC-AGACCGAGGGTTAC-GATAGCAGGATCGGTAGCACACAGGGAG-GA-TCAGG-
66 AAGATCGGACCGA-ACCGAGGGTTACAG-CAGCAGGATCGACAGCACACAGGGAGTGACT-AGGT
* * *
20109249 CAGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCCCGTTC
128 C-GATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAACACCCGCACGCCCGTTC
*
20109308 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCC
20109341 ATGTCTCAGA
Statistics
Matches: 176, Mismatches: 34, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
181 2 0.01
182 58 0.33
183 69 0.39
184 39 0.22
185 8 0.05
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
CATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCT
AAGATCGGACCGAACCGAGGGTTACAGCAGCAGGATCGACAGCACACAGGGAGTGACTAGGTCGA
TCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAACACCCGCACGCCCGTTC
Found at i:20109473 original size:159 final size:158
Alignment explanation
Indices: 20109274--20109667 Score: 434
Period size: 159 Copynumber: 2.5 Consensus size: 158
20109264 CGTATTCTGC
* * * *
20109274 CTCTCCGGCCAGCTGAGCACCCGCACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATT
1 CTCTCCGGCCGGCTGAGC-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* ** ** * *
20109339 CCATGTCTCAGACCTAG-CCAGACCGAGGGTTGTGGTTGCGGGACCGACAGCACGTAGAGGGGGA
65 CCATGTCTAAGA-CTAGACCAGACCGAGGGTTGCAGCAGCAGGACCAACAGCACGTAGAGGGGGA
*
20109403 -TCGGGCCGATCCCTTGCTTGCACATTATGA
129 CT-GGGCCGATCCCTAGCTTGCACATTATGA
* * * * *
20109433 CTCTCCGGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
1 CTCTCCGGCCGGCTGAGC-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
20109498 CC-TAGTCTAAGATTGGACCGGATCGAGGGTTGCAGCAGTAGGATCAACAGCACGTAGGGGGGGA
65 CCAT-GTCTAAGACTAGACCAGACCGAGGGTTGCAGCAGCAGGACCAACAGCACGTAGAGGGGGA
* * * *
20109562 CTGGGCCGGTCCCTAGCTTGCGCATTCTGC
129 CTGGGCCGATCCCTAGCTTGCACATTATGA
* *
20109592 CTCTCCGACCGGCTGAGCCCCTGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
1 CTCTCCGGCCGGCTGAGCCCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
*
20109657 CCATGTTTAAG
65 CCATGTCTAAG
20109668 CATACGAAGC
Statistics
Matches: 193, Mismatches: 37, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
158 6 0.03
159 185 0.96
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
CTCTCCGGCCGGCTGAGCCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGACTAGACCAGACCGAGGGTTGCAGCAGCAGGACCAACAGCACGTAGAGGGGGACT
GGGCCGATCCCTAGCTTGCACATTATGA
Found at i:20109693 original size:26 final size:26
Alignment explanation
Indices: 20109641--20109693 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20109631 GTTGGCTTAG
* * *
20109641 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGAAGCTCATTCCATGTCTAA
20109667 GCATACGAAGCTCATTCCCA-GTCTAA
1 GCATACGAAGCTCATT-CCATGTCTAA
20109693 G
1 G
20109694 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCATGTCTAA
Found at i:20109778 original size:11 final size:11
Alignment explanation
Indices: 20109762--20109794 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20109752 CCCAGGGCAC
20109762 CATCGTCGGAG
1 CATCGTCGGAG
*
20109773 CATCGTCGAAG
1 CATCGTCGGAG
20109784 CATCGTCGGAG
1 CATCGTCGGAG
20109795 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20110410 original size:26 final size:26
Alignment explanation
Indices: 20110374--20110426 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20110364 GTTGACTTAG
20110374 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
20110400 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20110426 G
1 G
20110427 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20110792 original size:159 final size:157
Alignment explanation
Indices: 20110527--20110902 Score: 414
Period size: 159 Copynumber: 2.4 Consensus size: 157
20110517 CCGGTTGAGC
* * *
20110527 GCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCCCAAC
1 GCCCGTACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
* * ** ** * * **
20110592 TGGATCGAGGGTTGTGGCAGTGGGACCGACAGTATGCAGAGGGGGACCGGGCTGAT-CCTCGACT
66 CGGACCGAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCCT-GACT
* *
20110656 TGCGCATTATGCCTCATCGGTCGGCTCGA
130 TACGCATTATGCCCCATCGGTCGGCTC-A
**
20110685 TGCCCGTACGCCCGTTTTGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
1 -GCCCGTACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
* * * * **
20110750 CCGGACCGAGGGTTGTGGTAGCAGGACTGGCAACACGTAGAGGGGGATTGAGCCAATCCCTGACT
65 CCGGACCGAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCCTGACT
*
20110815 TACGCATTATGCCCCTTCGGTCGGCTCA
130 TACGCATTATGCCCCATCGGTCGGCTCA
* * * * * *
20110843 GCGTCTGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCA-GTCTAAG
1 GC--CCGTACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
20110903 ATCAGATCGG
Statistics
Matches: 181, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 1 0.01
159 172 0.95
160 6 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (157 bp):
GCCCGTACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
CGGACCGAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCCTGACTT
ACGCATTATGCCCCATCGGTCGGCTCA
Found at i:20111084 original size:26 final size:26
Alignment explanation
Indices: 20111037--20111087 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20111027 TGGCTTAGGT
*
20111037 ATACGGAGTTCATTCTATGTCTAAGC
1 ATACGGAGTTCATTCCATGTCTAAGC
20111063 ATACGGAGTTCATTCCCA-GTCTAAG
1 ATACGGAGTTCATT-CCATGTCTAAG
20111088 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGC
Found at i:20111713 original size:26 final size:26
Alignment explanation
Indices: 20111661--20111713 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20111651 GTTGGCTTAG
** *
20111661 GCATACAGAGTTCATTCCGTGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20111687 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20111713 G
1 G
20111714 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20112687 original size:155 final size:156
Alignment explanation
Indices: 20112053--20112935 Score: 586
Period size: 158 Copynumber: 5.6 Consensus size: 156
20112043 CCCAGTCTAA
* * * * * * * * *
20112053 GCATACAGAGTTCATTCTCAGTCTAAGATCGAACTGGACTGAGGGTTACGGCATCTGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATC-AGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * *
20112118 ACACGTAG-GAGGAACCGGGCCGATCCCCAGCTTGCGCATTCTGCCT-TTCCGATCGGTTGAGCA
65 GCACGTAGAGAGGGACCGGGTCGATCCCCGGCTTGCGCATTAT-CCTCTT-CGACCGGCTCAGCG
* *
20112181 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCCG-ACGCTCGTTTCATCGGTTGACTTAG
* ** * * * * * ** * *
20112211 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCATCCAAACCAAGGGTTGTGGCAGTGGGACCAAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAT-CAGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * * * * *
20112275 CGTATGCAGAGGGGGACCAGG-CTGAT-CCCGGCTTGCGTATTATGCCTCATT-GGCTGGCTCAG
64 AGCACGTAGAGAGGGACCGGGTC-GATCCCCGGCTTGCGCATTAT-CCTC-TTCGACCGGCTCAG
* * ** *
20112337 CACCCGTACGC-CTATTTTGTGGGTT-AGCTTAG
126 CGCCCG-ACGCTC-GTTTCATCGGTTGA-CTTAG
* ** * * * * ** * *
20112369 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAAGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGA-TCAGACCGAGGGTTGCGACAGCAGGATCGAC
* * ** *
20112433 AGCACATAGAGGGGGACCAAGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGTTCAGCG
64 AGCACGTAGAGAGGGACCGGGTCGATCCCCGGCTTGCGCATTAT-CCTCTTCGACCGGCTCAGCG
* * * *
20112498 CTCGCACGCTCGCTTCATGGGTTGACTTAT
128 CCCG-ACGCTCGTTTCATCGGTTGACTTAG
* * *
20112528 GCATACGGAGTTCATTCCTAGTCTAAGAT-TATCAGACCGAGGGTTACGACAGCAGGATCGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATCAGACCGAGGGTTGCGACAGCAGGATCGACAG
* * * * *
20112592 CACGTAG-GAGGGACCGGGTCGATCCCTGGCTTGTGCATTCTTCTCTTCAACCGGCTCAGCGCCC
66 CACGTAGAGAGGGACCGGGTCGATCCCCGGCTTGCGCATTATCCTCTTCGACCGGCTCAGCGCCC
* * * *
20112656 GAGCGCTTGTTTCCTTGGTTAACTTAG
131 GA-CGCTCGTTTCATCGGTTGACTTAG
* *
20112683 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
20112748 GCAAGTAGCGAAGGACCGGG-CTGATCCCCGGCTTGCGCATTATGCCTATCCGACCGGCTCAGTG
65 GCACGTAGAGAGGGACCGGGTC-GATCCCCGGCTTGCGCATTAT-CCTCTTCGACCGGCTCAGCG
* *
20112812 GCTGAACGCTCGTTTCATCGGTTGACTTAG
128 CCCG-ACGCTCGTTTCATCGGTTGACTTAG
** * * * * *
20112842 GCATGTGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * *
20112907 GGACGTAG-GAGGGATCGGGTTGGTCCCCG
65 GCACGTAGAGAGGGACCGGGTCGATCCCCG
20112936 ACTTACACAT
Statistics
Matches: 569, Mismatches: 133, Indels: 46
0.76 0.18 0.06
Matches are distributed among these distances:
154 1 0.00
155 66 0.12
156 28 0.05
157 72 0.13
158 213 0.37
159 182 0.32
160 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGATCAGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGTAGAGAGGGACCGGGTCGATCCCCGGCTTGCGCATTATCCTCTTCGACCGGCTCAGCGCCC
GACGCTCGTTTCATCGGTTGACTTAG
Found at i:20112750 original size:314 final size:315
Alignment explanation
Indices: 20112358--20112926 Score: 718
Period size: 314 Copynumber: 1.8 Consensus size: 315
20112348 CTATTTTGTG
* * * * ** *
20112358 GGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAG
1 GGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTTGCGACAA
** * * *
20112423 CAAGACCGACAGCACA-TAGAGGGGGACCAAG-TCGATCCCCGGCTTGCGCATTATGCCTCTTCG
66 CAAGACCGACAGCA-AGTAGAGAAGGACCAGGCT-GATCCCCGGCTTGCGCATTATGCCTATCCG
* * * * * *
20112486 ACCGGTTCAG-CGCTCGCACGCTCGCTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAGT
129 ACCGGCTCAGTCGCT-GAACGCTCGCTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
* * * *
20112550 CTAAGAT-TATCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGTAGGAGGGACCGGGTCGA
193 CTAAGATCGACCAGACCGAGGGTTACAACAGCAAGATCGACAGCACGTAGGAGGGACCGGGTCGA
20112614 TCCCTGGCTTGTGCATTCTTCTCTTCAACCGGCTCAGCGCCCGAGCGCTTGTTTCCTT
258 TCCCTGGCTTGTGCATTCTTCTCTTCAACCGGCTCAGCGCCCGAGCGCTTGTTTCCTT
* *
20112672 GGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGAC
1 GGTTAACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACCGAGGGTTGCGAC
* * * *
20112735 AACAGGATCGACAGCAAGTAGCGAAGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTATCCG
64 AACAAGACCGACAGCAAGTAGAGAAGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTATCCG
* * **
20112800 ACCGGCTCAGTGGCTGAACGCTCGTTTCATCGGTTGACTTAGGCATGTGAAGTTCATTCCCAGTC
129 ACCGGCTCAGTCGCTGAACGCTCGCTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
* * * *
20112865 TAAGATCGGACCAGACCGAGGGTTGCAACAGCAAGATCGATAGGACGTAGGAGGGATCGGGT
194 TAAGATC-GACCAGACCGAGGGTTACAACAGCAAGATCGACAGCACGTAGGAGGGACCGGGT
20112927 TGGTCCCCGA
Statistics
Matches: 212, Mismatches: 36, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
313 4 0.02
314 155 0.73
315 7 0.03
316 46 0.22
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (315 bp):
GGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTTGCGACAA
CAAGACCGACAGCAAGTAGAGAAGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTATCCGAC
CGGCTCAGTCGCTGAACGCTCGCTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
AGATCGACCAGACCGAGGGTTACAACAGCAAGATCGACAGCACGTAGGAGGGACCGGGTCGATCC
CTGGCTTGTGCATTCTTCTCTTCAACCGGCTCAGCGCCCGAGCGCTTGTTTCCTT
Found at i:20112854 original size:159 final size:154
Alignment explanation
Indices: 20112453--20112904 Score: 503
Period size: 159 Copynumber: 2.9 Consensus size: 154
20112443 GGGGGACCAA
* * * * *
20112453 GTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGTTCAGCGCTCGCACGCTCGCTTCATGG
1 GTCGATCCCCGGCTTGCGCATTATG-C-CTTCGACCGGCTCAGGGCT-GAACGCTCGTTTCATCG
* * * *
20112518 GTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGAT-TATCAGACCGAGGGTTACGACAGCA
63 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGATCAGACCGAGGGTTGCGACAGCA
* *
20112582 GGATCGACAGCACGTAGGAGGGACCGG
128 GGATCGACAGCAAGTAGGAAGGACCGG
* * * * * * * * * * *
20112609 GTCGATCCCTGGCTTGTGCATTCTTCTCTTCAACCGGCTCAGCGCCCGAGCGCTTGTTTCCTTGG
1 GTCGATCCCCGGCTTGCGCATTATGC-CTTCGACCGGCTCAG-GGCTGAACGCTCGTTTCATCGG
* * *
20112674 TTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAACA
64 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGACAGCA
20112739 GGATCGACAGCAAGTAGCGAAGGACCGG
128 GGATCGACAGCAAGTAG-GAAGGACCGG
20112767 G-CTGATCCCCGGCTTGCGCATTATGCCTATCCGACCGGCTCAGTGGCTGAACGCTCGTTTCATC
1 GTC-GATCCCCGGCTTGCGCATTATGCCT-T-CGACCGGCTCAG-GGCTGAACGCTCGTTTCATC
** * * *
20112831 GGTTGACTTAGGCATGTGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAG
62 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGACAG
*
20112896 CAAGATCGA
126 CAGGATCGA
20112905 TAGGACGTAG
Statistics
Matches: 243, Mismatches: 46, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
155 62 0.26
156 22 0.09
157 40 0.16
158 30 0.12
159 89 0.37
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (154 bp):
GTCGATCCCCGGCTTGCGCATTATGCCTTCGACCGGCTCAGGGCTGAACGCTCGTTTCATCGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGATCAGACCGAGGGTTGCGACAGCAGGA
TCGACAGCAAGTAGGAAGGACCGG
Found at i:20113037 original size:26 final size:26
Alignment explanation
Indices: 20113001--20113052 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20112991 TTGGCTTAGC
20113001 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
20113027 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
20113053 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:20113322 original size:13 final size:13
Alignment explanation
Indices: 20113304--20113338 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
20113294 TGCACATTAT
20113304 GCCTCTTCGGCGA
1 GCCTCTTCGGCGA
*
20113317 GCCTCTTCGGTGA
1 GCCTCTTCGGCGA
20113330 GCCTCTTCG
1 GCCTCTTCG
20113339 ACCGGTTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.37, G:0.29, T:0.29
Consensus pattern (13 bp):
GCCTCTTCGGCGA
Found at i:20113418 original size:26 final size:26
Alignment explanation
Indices: 20113381--20113433 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20113371 GTTGACTTAG
20113381 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
20113407 GCATACGTAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20113433 G
1 G
20113434 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20113715 original size:159 final size:157
Alignment explanation
Indices: 20113471--20114069 Score: 565
Period size: 159 Copynumber: 3.8 Consensus size: 157
20113461 CACGATCGAC
* * * * * * * *
20113471 AGCACGCAGGGGGGATCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
1 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCAGCCGGCTCAGCGC
* *
20113536 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
66 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
*
20113601 AACCGAGGGTTGTGGCAGTGGGACGGGT
131 AACCGAGGGTTGTGGCAGCGGGAC-GGT
* * * * * * *
20113629 AGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTTCGCATTATGCCTCTTCGGCCGGCTCAGCT
1 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCAGCCGGCTCAGCG
* * * ** * *
20113694 CCTGCATGCCCGTTTTGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
20113759 -AGATCGTGGGTTGTGGTAGGGGGACCGGT
130 GA-ACCGAGGGTTGTGGCAGCGGGA-CGGT
* * * * * * ** * *
20113788 AGCACGCAGAGGGGGATCGGGCCAATCCTCGGCTTGCATATTGTGCCTCTTCAGTAGGCTCAACA
1 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCAGCCGGCTCAGCG
** * * * ** * ** *
20113853 CCCGGGCGCTCGTTTCATGGGTTGACTTATGTATACAGAGTTCATTCCCA-GTCTAAGATCGGAC
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAG
* *
20113917 CCG-ACCGAGGGTTGTGGCAGCAGGATCGAT
128 CCGAACCGAGGGTTGTGGCAGCGGGA-CGGT
* * * * *
20113947 GGCACGTAGGGGTGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCAGTCGGCTGAGCG
1 AGCACGCAGGGG-GGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCAGCCGGCTCAGCG
* *
20114012 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGCGTTCATTCCATGTCTAAGC
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20114070 TTACGGAGTT
Statistics
Matches: 353, Mismatches: 80, Indels: 16
0.79 0.18 0.04
Matches are distributed among these distances:
158 16 0.05
159 329 0.93
160 8 0.02
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.24
Consensus pattern (157 bp):
AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCAGCCGGCTCAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
AACCGAGGGTTGTGGCAGCGGGACGGT
Found at i:20115263 original size:158 final size:158
Alignment explanation
Indices: 20114796--20115601 Score: 640
Period size: 158 Copynumber: 5.1 Consensus size: 158
20114786 AAGCATACAA
* * * * *
20114796 AGTTCATTCCCA-GTCTAAGATCGGACTGGAACAAGGGTTGCAGCAGCAGGATCGACAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCGGACCGGATCAAGGGTTGCAGCAGTAGGACCGACAGCACGTA
* * ** * * *
20114860 GAGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCT-CTGACTGGTTGAGCTCCCGCACG
65 GGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTC-GGTTGAGCGCCCGCACG
* * *
20114924 -TCCATTTTGTGGGTTGGCTTAGGCATAGGG
129 CT-CGTTTCGTGGGTTGGCTTAGGCATACGG
* ** * * ** **
20114954 AGTTCATTCCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGCAGT-GAGACCGGTAGCACGT
1 AGTTCATTCCATGTCTAAGATCGGA-CCGGATCAAGGGTTGCAGCAGTAG-GACCGACAGCACGT
** * * * * * * ** * * *
20115017 AAAAGGGTACCGGACCGATCCCCGGCTTGTGCATTATGCCTCTCCAGTCGACTCAGTGCCCGTAC
64 -AGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCAC
* * *
20115082 GCTCGTTTTGTGGTTTGACTTAGGCATACGG
128 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * * *
20115113 AGTTCATTTCCA-GTCTAAGATCGAACCAGACCAAGGGTTACAGTAGTAGGAACGATAGCACGTA
1 AGTTCA-TTCCATGTCTAAGATCGGACCGGATCAAGGGTTGCAGCAGTAGGACCGACAGCACGTA
* * *
20115177 GGGGGGACCGGGTCGGTTCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGC
65 GGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGC
* *
20115242 TCATTTCGTGGGTTGGCTTAGGCATAGGG
130 TCGTTTCGTGGGTTGGCTTAGGCATACGG
** * ** * * *
20115271 AGTTCATTCCATGTCCCCAG-TCGGA-C--A--GAGGGTTGTGGCAGTGGGACCGGCAGCATGCA
1 AGTTCATTCCATGT-CTAAGATCGGACCGGATCAAGGGTTGCAGCAGTAGGACCGACAGCA--CG
* * * *
20115330 TA-GGGGGATCC-GGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCGA-CGCCCGG
63 TAGGGGGGA-CCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGG-TTGAGCGCCCGC
* * * * * *
20115392 ATGCTTGTTTCATGGGTTGACTTATGCATATGG
126 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
** * * * *
20115425 AGTTCATTCCCA-GTCTAAGATCGGATTGGATCGAGGGTTGC-GATAGAAGGATCGACAGCACGT
1 AGTTCATT-CCATGTCTAAGATCGGACCGGATCAAGGGTTGCAG-CAGTAGGACCGACAGCACGT
* * *
20115488 AGGGGGGACCGGGCCGATCCTTGACTTGCGCATTCTGCCTCTCCGGCCGGCTT-AGCGCCCGCAC
64 AGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGG-TTGAGCGCCCGCAC
20115552 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
128 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
20115583 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
20115602 CATACGGAGT
Statistics
Matches: 504, Mismatches: 117, Indels: 54
0.75 0.17 0.08
Matches are distributed among these distances:
153 22 0.04
154 87 0.17
155 12 0.02
157 22 0.04
158 217 0.43
159 132 0.26
160 12 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
AGTTCATTCCATGTCTAAGATCGGACCGGATCAAGGGTTGCAGCAGTAGGACCGACAGCACGTAG
GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:20115487 original size:312 final size:312
Alignment explanation
Indices: 20114796--20115597 Score: 972
Period size: 312 Copynumber: 2.6 Consensus size: 312
20114786 AAGCATACAA
* * *
20114796 AGTTCATTCCCAGTCTAAGATCGGACTGGAACAAGGGTTGCAGCAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGACTGGAACAAGGGTTGCAGTAGAAGGATCGACAGCACGTAG
* * * ** * *
20114861 AGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCT-CTGACTGGTTGAGCTCCCGCACG-
66 GGGGGACCGGGTCGGTTCCTGGCTTGCGCATTCTGCCTCTCCGGAC-GGTTGAGCGCCCGCACGC
*
20114924 TCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAG
130 T-CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG--T---CCCCAGTCGGATCGAG
* * * *
20114989 GGTTGTGGCAGTGAGACCGGTAGCACGTAAAAGGGTACCGGACCGATCCCCGGCTTGTGCATTAT
189 GGTTGTGGCAGTGAGACCGGCAGCACGCAAAAGGGGACCGGACCGATCCCCGGCTTGCGCATTAT
* * ** *
20115054 GCCTCTCCAGTCGACTCAGTGCCCGTACGCTCGTTTTGTGGTTTGACTTAGGCATACGG
254 GCCTCTCCAGTCGACTCAGCGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * ** * * * * *
20115113 AGTTCATTTCCAGTCTAAGATCGAACCAGACCAAGGGTTACAGTAGTAGGAACGATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCGGACTGGAACAAGGGTTGCAGTAGAAGGATCGACAGCACGTAG
*
20115178 GGGGGACCGGGTCGGTTCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCT
66 GGGGGACCGGGTCGGTTCCTGGCTTGCGCATTCTGCCTCTCCGGACGGTTGAGCGCCCGCACGCT
20115243 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCCCAGTCGGA-CAGAGGGTTGT
131 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCCCAGTCGGATC-GAGGGTTGT
* * * * *
20115307 GGCAGTGGGACCGGCAGCATGCATAGGGGGATCCGG-CCGATCCCTGGCTTGCGCATTATGCCTC
195 GGCAGTGAGACCGGCAGCACGCAAAAGGGGA-CCGGACCGATCCCCGGCTTGCGCATTATGCCTC
* * * * * * *
20115371 TTCGGTCGGCTC-GACGCCCGGATGCTTGTTTCATGGGTTGACTTATGCATATGG
259 TCCAGTCGACTCAG-CGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * *
20115425 AGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGC-GATAGAAGGATCGACAGCACGTA
1 AGTTCATTCCCAGTCTAAGATCGGACTGGAACAAGGGTTGCAG-TAGAAGGATCGACAGCACGTA
* * * *
20115489 GGGGGGACCGGG-CCGATCCTTGACTTGCGCATTCTGCCTCTCCGGCCGGCTT-AGCGCCCGCAC
65 GGGGGGACCGGGTCGGTTCC-TGGCTTGCGCATTCTGCCTCTCCGGACGG-TTGAGCGCCCGCAC
* *
20115552 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
128 GCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
20115598 TAAGCATACG
Statistics
Matches: 419, Mismatches: 58, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
311 8 0.02
312 255 0.61
313 6 0.01
315 1 0.00
317 145 0.35
318 4 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (312 bp):
AGTTCATTCCCAGTCTAAGATCGGACTGGAACAAGGGTTGCAGTAGAAGGATCGACAGCACGTAG
GGGGGACCGGGTCGGTTCCTGGCTTGCGCATTCTGCCTCTCCGGACGGTTGAGCGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCCCAGTCGGATCGAGGGTTGTG
GCAGTGAGACCGGCAGCACGCAAAAGGGGACCGGACCGATCCCCGGCTTGCGCATTATGCCTCTC
CAGTCGACTCAGCGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGG
Found at i:20115611 original size:26 final size:26
Alignment explanation
Indices: 20115575--20115627 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20115565 GTTGGCTTAG
20115575 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20115601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20115627 G
1 G
20115628 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20116768 original size:162 final size:159
Alignment explanation
Indices: 20116392--20116770 Score: 379
Period size: 159 Copynumber: 2.4 Consensus size: 159
20116382 GGCTGAGCTA
* * * * ** *
20116392 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTATATGTCTAAGCCCCAGCCG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCG
* ** * *
20116457 GACCGAGGGTTGTGGTAGCGAGATTGGCAACATGCAGAGGGGGACCAAGTCGATCCCCAGCTTGC
66 GACCGAGGGTTGTGGTAGCGAGATTGACAACACACAGAGAGGGACCAAGCCGATCCCCAGCTTGC
* * *
20116522 ACATTATGCCTCTCCGATTGGCTCAGCAC
131 ACATTATACCTCTCCGATCGGCTCAACAC
* * * * * *
20116551 CCGTACGCTCGTTTCATTGGTTAACTTAGGCATACGGAGTTCAATCCCA-GTCTAAG-ATCAGAT
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC-ATTCCATGTCTAAGCACCAG-C
* * *** *
20116614 CGGATCGAGGGTTGTGGTAGC-AGGATTGACAGCACACA-AGAGGGACTGGGCCGATCCTCAGCT
64 CGGACCGAGGGTTGTGGTAGCGA-GATTGACAACACACAGAGAGGGACCAAGCCGATCCCCAGCT
** * *
20116677 TGTGCATTCTACCTCTCCGATCGGCTGAACACCC
128 TGCACATTATACCTCTCCGATCGGCTCAACA--C
*
20116711 GCACGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 -C-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20116771 TACGGAGTTC
Statistics
Matches: 175, Mismatches: 36, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
158 47 0.27
159 73 0.42
160 4 0.02
161 6 0.03
162 44 0.25
163 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (159 bp):
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCG
GACCGAGGGTTGTGGTAGCGAGATTGACAACACACAGAGAGGGACCAAGCCGATCCCCAGCTTGC
ACATTATACCTCTCCGATCGGCTCAACAC
Found at i:20117152 original size:26 final size:26
Alignment explanation
Indices: 20117122--20117174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20117112 GTTGACTTAG
*
20117122 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
*
20117148 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
20117174 G
1 G
20117175 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:20117662 original size:26 final size:26
Alignment explanation
Indices: 20117628--20117677 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20117618 GGCTTAGGCA
*
20117628 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGAAGTTCATTCCCA-GTCTAAGCG
20117654 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
20117678 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:20118642 original size:197 final size:197
Alignment explanation
Indices: 20118339--20118695 Score: 518
Period size: 197 Copynumber: 1.8 Consensus size: 197
20118329 CCACACGCTC
* *
20118339 GTTTCATGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCAA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAAAGTTCATTCCAA
* * * * * * *
20118404 GTCTAAAATTGGACTCGACTGAGGGTTGTGACAGTAGGATCGATAGCACGTAGGGGGGA-TCGGG
66 GTCTAAAATCGAACTAGACTGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGAGGGACT-GGG
*
20118468 CCGATCATCGACTTGCGCATTCTACCTCTCCGACCGGCCTCTCCGGCCTGCTGAACGCCCGCGCA
130 CCGATCATCGACTTGCACATTCTACCTCTCCGACCGGCCTCTCCGGCCTGCTGAACGCCCGCGCA
20118533 CTT
195 CTT
* ** * *
20118536 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTTCAATCTAAGCATACAGAGTTCATTCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAAAGTTCATTCCAA
* *
20118601 GTCTAAGATCGAACTAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGAGGGACTGGGC
66 GTCTAAAATCGAACTAGACTGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGAGGGACTGGGC
* * *
20118666 CGATCCTCGACTTGTACATTCTGCCTCTCC
131 CGATCATCGACTTGCACATTCTACCTCTCC
20118696 CGCCAACTGA
Statistics
Matches: 139, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
197 138 0.99
198 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.25
Consensus pattern (197 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAAAGTTCATTCCAA
GTCTAAAATCGAACTAGACTGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGAGGGACTGGGC
CGATCATCGACTTGCACATTCTACCTCTCCGACCGGCCTCTCCGGCCTGCTGAACGCCCGCGCAC
TT
Found at i:20119558 original size:26 final size:26
Alignment explanation
Indices: 20119522--20119572 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20119512 TTGACTTAGG
20119522 CATATGGAGTTCATCCCCAGTCTAAC
1 CATATGGAGTTCATCCCCAGTCTAAC
*
20119548 CATATGGAGTTCATTCCCAGTCTAA
1 CATATGGAGTTCATCCCCAGTCTAA
20119573 GATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATATGGAGTTCATCCCCAGTCTAAC
Found at i:20120433 original size:26 final size:26
Alignment explanation
Indices: 20120387--20120438 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20120377 TTAGCTTAGA
20120387 CATACGGAGCTCAACCTCAGTCTAAG
1 CATACGGAGCTCAACCTCAGTCTAAG
* *
20120413 CATACGGAGTTCATTCC-CAGTCTAAG
1 CATACGGAGCTCA-ACCTCAGTCTAAG
20120439 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
CATACGGAGCTCAACCTCAGTCTAAG
Found at i:20120874 original size:26 final size:26
Alignment explanation
Indices: 20120838--20120890 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20120828 GTTGGCTTAG
20120838 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
20120864 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
20120890 G
1 G
20120891 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:20121255 original size:26 final size:26
Alignment explanation
Indices: 20121219--20121269 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20121209 TTGACTTAGG
*
20121219 CATACGGAGTTTATCCCCAATCTAAA
1 CATACGGAGTTCATCCCCAATCTAAA
* *
20121245 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAATCTAA
20121270 GATCGGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAA
Found at i:20121965 original size:25 final size:26
Alignment explanation
Indices: 20121927--20121978 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20121917 GTTGACTTAG
20121927 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20121953 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20121978 G
1 G
20121979 ATAGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20122299 original size:26 final size:25
Alignment explanation
Indices: 20122263--20122314 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
20122253 GTTAGCTTAG
*
20122263 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCA-GTCTAA
*
20122289 GCATATGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
20122314 G
1 G
20122315 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:20123158 original size:159 final size:158
Alignment explanation
Indices: 20122796--20123159 Score: 371
Period size: 159 Copynumber: 2.3 Consensus size: 158
20122786 TCATTTGCAG
* *
20122796 TCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAAGGGGGATCGGGTC
1 TCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCC
* * * * * *
20122861 GATCCCCGACTTGCGCATTCTACCTCTCTGACCGACTGAGTGCCCACACATCTGTTTCGTGGGTT
66 GATCCCCGACTTGCACATTATACCTCTCCGACCGACTCAGCGCCCACACATCTGTTTCATGGGTT
* *
20122926 GGCTTAGGCATAGGGAGTTCATTCCATG
131 GACTTAGGCATAGGGAGTTCATTCCATA
* ** * * * * *
20122954 TCTAAG-CCCCAGTCAGACCGAAGGTTGTGGCAGCGGGACCAACAGCACGCAGAGGGGGA-CTGG
1 TCTAAGATCGGA-TCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-AGGGGGATC-GG
* * * * * * *
20123017 GCCGATCCCTGGCTTGCACATTATGCCTTTCCGGCC-AGGTCAGCGCCCGCAC-TCTCGTTTCAT
63 GCCGATCCCCGACTTGCACATTATACCTCTCCGACCGA-CTCAGCGCCCACACATCT-GTTTCAT
20123080 GGGTTGACTTAGGCATACGGG-GTTCATTCCCA-A
126 GGGTTGACTTAGGCATA-GGGAGTTCATT-CCATA
***
20123113 TCTAAGATCGGATCGGACCGAGGGTCACGGCAGCAGGATCGACAGCA
1 TCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
20123160 TACAGGGGGT
Statistics
Matches: 162, Mismatches: 36, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 44 0.27
159 108 0.67
160 8 0.05
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
TCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCC
GATCCCCGACTTGCACATTATACCTCTCCGACCGACTCAGCGCCCACACATCTGTTTCATGGGTT
GACTTAGGCATAGGGAGTTCATTCCATA
Found at i:20123287 original size:26 final size:26
Alignment explanation
Indices: 20123251--20123303 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20123241 GTTGGCATAG
20123251 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20123277 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20123303 G
1 G
20123304 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20123667 original size:26 final size:26
Alignment explanation
Indices: 20123631--20123709 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
20123621 GTTGACTTAG
* *
20123631 GCATACAGAGTTGATCCCCAGTTTAA
1 GCATACGGAGTTGATCCCCAGTCTAA
*
20123657 GCATACGGAGTTGATCCCCAGTGTAA
1 GCATACGGAGTTGATCCCCAGTCTAA
* *
20123683 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTGATCCCCAGTCTAA
20123709 G
1 G
20123710 ATCAGACCGT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTGATCCCCAGTCTAA
Found at i:20124209 original size:26 final size:26
Alignment explanation
Indices: 20124157--20124209 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20124147 GTTGGCTTAG
* *
20124157 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
20124183 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
20124209 G
1 G
20124210 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:20124942 original size:158 final size:157
Alignment explanation
Indices: 20124372--20124943 Score: 512
Period size: 158 Copynumber: 3.6 Consensus size: 157
20124362 TAAACATATG
* * * * * *
20124372 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTATGGTAGCAGGATCGGCAACACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCA
* * * ** * * * * *
20124437 GGGGGGACCGGGTCGATCCCTAGCTTGTGCATTCTACCTCTTT-GG-CTGGCTGAGCGCCCG-CA
66 GGGGGGATCGGGCCAATCCCCGGCTTGTGCATTATA-ATCTTTCGGTC-GGGTCAACGCCCGTC-
* * * *
20124499 CGC-CTGTTTCATGGGTTGGCTTAGGCAGAGG
128 CGCTC-GTTTCGTGGGTTGACTTAGGCATA-C
** * * * *
20124530 GAGTTCATT-CCATGTCTAAGCCCCAG-CCAAACTGAGGGTTGTGGCAGC-GAGACCGACAGCAC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGTGGTAGCAG-GATCGACAGCAC
* ** * * * * *
20124592 GCAAGGGGGATCGGGCCAATCCTTGGCTTGCGCATTATAA-CTCTCACGTCGGGTCAACACTCGT
63 GCAGGGGGGATCGGGCCAATCCCCGGCTTGTGCATTATAATCTTTC-GGTCGGGTCAACGCCCGT
* *
20124656 ACACTCGTTTCGTGGGTTGACTTAGGCATAC
127 CCGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
20124687 GAAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGTGATAGTAGGATCGACAGTACAC
1 G-AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* ** * * *
20124752 AGGGGGGATCGAGCCGGTCCCCGGCTTATGCATTATAATTTTTCGGTCGGGTCAATGCCCGTCCG
65 AGGGGGGATCGGGCCAATCCCCGGCTTGTGCATTATAATCTTTCGGTCGGGTCAACGCCCGTCCG
20124817 CTCGTTTCGTGGGTTGACTTAGGCATAC
130 CTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
20124845 AGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGC
1 -GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* *
20124910 AGGGGGGATCGGGTCAATCCCCGGCTCGTGCATT
65 AGGGGGGATCGGGCCAATCCCCGGCTTGTGCATT
20124944 TTGCCTCTTT
Statistics
Matches: 324, Mismatches: 76, Indels: 28
0.76 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 7 0.02
158 302 0.93
159 12 0.04
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCA
GGGGGGATCGGGCCAATCCCCGGCTTGTGCATTATAATCTTTCGGTCGGGTCAACGCCCGTCCGC
TCGTTTCGTGGGTTGACTTAGGCATAC
Found at i:20125227 original size:26 final size:26
Alignment explanation
Indices: 20125189--20125241 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20125179 GTTGGCTTAG
**
20125189 GCATACAGTGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
20125215 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20125241 G
1 G
20125242 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20125581 original size:26 final size:26
Alignment explanation
Indices: 20125544--20125596 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20125534 GTTGACTTAG
20125544 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20125570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20125596 G
1 G
20125597 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20125811 original size:343 final size:351
Alignment explanation
Indices: 20125158--20125913 Score: 806
Period size: 343 Copynumber: 2.2 Consensus size: 351
20125148 CTGATTGAAT
* * *
20125158 GCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-AGTGTTCATTCCATGTCTAAGCATACA
1 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATCCCA-GTCTAAGCATACA
*
20125222 AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGAT
64 AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGACCAGCAGCAGGA-
* * *
20125287 CGACAGCACGCAGAGGGGACCGAGTCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGTCGACTGA
128 CGACAG-ACGCAGACGGGACCGAGTCGAT-CCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGA
* *
20125352 GCACCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCA
191 GCACCCACACGCTCGTTTCGTGCGTTGGCTTAGGCATACAAAGTTCATTCCACGTCTAAGCCCCA
* * * * * * *
20125417 ACCGGACTGAGGGTTGTGGCAGTAGGACCGACAGCATGTAGACGAGGACCGGG-CTGATCCCCAG
256 ACCGAACTGAGAGCTGTGGCAGCAGGACCGACAACACGCAGACGAGGACCGGGTC-GATCCCCAG
* ** * *
20125481 CTTGCGCATTGTGCCTCTTCGACCGGCTGAGC
320 CTTGCACATCATGCCTCTTCGACAGGCTCAGC
* **
20125513 GCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGG
1 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCAGTCTAAGCATACAA
* * * * * * *
20125578 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGTAGGATCGGTAGCATG-C-
65 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGACCAGCAGCAGGACG
* * * *
20125641 A-AG-TG-GGATCGGG-CCGA-TCG-T-C-GGCTTGCGCATTCTGCCTCTTCGGCC-AGTTGAGC
130 ACAGACGCAGA-CGGGACCGAGTCGATCCTGGCTTGCGCATTCTGCCTCTCCGGCCGA-CTGAGC
* ***
20125697 ACCCACACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAA
193 ACCCACACGCTC-GTTTCGTGCGTTGGCTTAGGCATACAAAGTTCATTCCACGTCTAAGCCCCAA
* * * * *
20125761 CCGAA-TCGAGAGCTGTGGCAGCGGGACC-AGCAACACGCAGAGGGGGACCGGGTCGATCCTCGG
257 CCGAACT-GAGAGCTGTGGCAGCAGGACCGA-CAACACGCAGACGAGGACCGGGTCGATCCCCAG
*
20125824 CTTGCACATCATGCCTCTTCGATAGGCTCAGC
320 CTTGCACATCATGCCTCTTCGACAGGCTCAGC
* * * * * ** *
20125856 GCCCGCACGCTCGTTTTGTGGGTTAACTTATGCACACGGGGTTCATTCCTAGTCTAAG
1 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TCCCAGTCTAAG
20125914 ATTGGACCAG
Statistics
Matches: 338, Mismatches: 54, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
342 4 0.01
343 202 0.60
344 3 0.01
346 1 0.00
347 3 0.01
348 6 0.02
349 4 0.01
351 2 0.01
352 1 0.00
353 1 0.00
355 107 0.32
356 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (351 bp):
GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATACAAA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGACCAGCAGCAGGACGA
CAGACGCAGACGGGACCGAGTCGATCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
CACACGCTCGTTTCGTGCGTTGGCTTAGGCATACAAAGTTCATTCCACGTCTAAGCCCCAACCGA
ACTGAGAGCTGTGGCAGCAGGACCGACAACACGCAGACGAGGACCGGGTCGATCCCCAGCTTGCA
CATCATGCCTCTTCGACAGGCTCAGC
Found at i:20126059 original size:159 final size:158
Alignment explanation
Indices: 20125652--20126072 Score: 386
Period size: 159 Copynumber: 2.6 Consensus size: 158
20125642 AGTGGGATCG
* * * * *
20125652 GGCCGATCGTCGGCTTGCGCATTCTGCCTCTTCGGCCAGTTGAGCACCCACACGC-CTGTTTCGT
1 GGCCAATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCACACGCTC-GTTTCGT
* * * *
20125716 GGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAACCGAATCGAGAGCTGTGGCA
65 GGGTTGGCTTA-GCATACGGAGTTCATTCCACGTCTAAGACCCAACCGAATAGAGAGCTGGGGCA
* *
20125781 GCGGGACCAGCAACACGCAGAGGGGGACCG
129 GCAGGACCAGCAACACGCAGAGGGGGACCA
* * * * * * * * *
20125811 GGTCGATCCTCGGCTTGCACA-TCATGCCTCTTCGATAGGCTCAGCGCCCGCACGCTCGTTTTGT
1 GGCCAATCCTCGGCTTGCGCATTC-TGCCTCTTCGGTCGGCTGAGCACCCACACGCTCGTTTCGT
** * * **** * *
20125875 GGGTTAACTTATGCACACGGGGTTCATTCCTA-GTCTAAGATTGGACC-AGATAGAGGGTTGGGG
65 GGGTTGGCTTA-GCATACGGAGTTCATTCC-ACGTCTAAGACCCAACCGA-ATAGAGAGCTGGGG
* * *
20125938 CAGCAGGATC-GACAGCACGCTGAGGGGGACCA
127 CAGCAGGACCAG-CAACACGCAGAGGGGGACCA
* *
20125970 GGCCAATCC-CTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGCTCATTTCGT
1 GGCCAATCCTC-GGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCACACGCTCGTTTCGT
* *
20126034 GGGTTGGCTTAGACATACGAAGTTCATTCCATGTCTAAG
65 GGGTTGGCTTAG-CATACGGAGTTCATTCCACGTCTAAG
20126073 CATACGAAGT
Statistics
Matches: 205, Mismatches: 48, Indels: 18
0.76 0.18 0.07
Matches are distributed among these distances:
158 7 0.03
159 194 0.95
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
GGCCAATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCACACGCTCGTTTCGTG
GGTTGGCTTAGCATACGGAGTTCATTCCACGTCTAAGACCCAACCGAATAGAGAGCTGGGGCAGC
AGGACCAGCAACACGCAGAGGGGGACCA
Found at i:20126083 original size:26 final size:26
Alignment explanation
Indices: 20126047--20126098 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20126037 TTGGCTTAGA
*
20126047 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTAATTCCCA-GTCTAAG
20126073 CATACGAAGTTAATTCCCAGTCTAAG
1 CATACGAAGTTAATTCCCAGTCTAAG
20126099 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTAATTCCCAGTCTAAG
Found at i:20129361 original size:159 final size:159
Alignment explanation
Indices: 20128978--20129389 Score: 377
Period size: 159 Copynumber: 2.6 Consensus size: 159
20128968 ACTGAGCGCG
** * *
20128978 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
1 CGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* ** * *
20129043 ACTGAGGGTTGTGGCAGCAAGACCGACAGCACGGAGAGGGGGACCGGGCCGATCTTTGACTTGCG
66 ACCGAGGGTTACGGCAGCAAGACCGACAGCACGAAGAGGGGGACCGGGCCGATCTTCGACTTGCG
* * * **
20129108 CATTACGCCTCTTCGGTCAGCTCAGTGAC
131 CATTACGCCTCTCCAGCCAGCTCAGCCAC
* * * * * ****
20129137 TGCACGCTAGTTTCATGGGTTGACTTATGCATACAGAGTTAATTCCCA-GTCTAAG-ATGGGACC
1 CGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CC
* * * ** * * *
20129200 GGACCAAGGGTTACGGTAGCAGGATTGACAGCATGCAAG-GGGGGACCGGGTCGAT-TCTCGGCT
64 GGACCGAGGGTTACGGCAGCAAGACCGACAGCACG-AAGAGGGGGACCGGGCCGATCT-TCGACT
* * *
20129263 TGTGCATT-CTGCCTCTCCAGCCAGCTGAGCCCC
127 TGCGCATTAC-GCCTCTCCAGCCAGCTCAGCCAC
* * *
20129296 CGTACGCTATTTTCATGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
1 CGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
**
20129361 ACCGAGGGTTGTGGCAG-AAGAACCGACAG
66 ACCGAGGGTTACGGCAGCAAG-ACCGACAG
20129390 TGGGATCGGC
Statistics
Matches: 192, Mismatches: 53, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
158 8 0.04
159 178 0.93
160 6 0.03
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
CGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTACGGCAGCAAGACCGACAGCACGAAGAGGGGGACCGGGCCGATCTTCGACTTGCG
CATTACGCCTCTCCAGCCAGCTCAGCCAC
Found at i:20129942 original size:670 final size:667
Alignment explanation
Indices: 20128703--20130901 Score: 2241
Period size: 670 Copynumber: 3.2 Consensus size: 667
20128693 TGAGGGTTAT
* * * * *
20128703 GGCAGC-AGGATCGACAGCACGTAGAAGGGGACCGTGCTGATCCTCGGCTTACGCATTATGCCTT
1 GGCAGCGA-GATCGGCAGCACGCAGAAGGGGACCGGGCTGATCC-C-GCTTGCGCATTATGCCTC
* * * * * *
20128767 TCCGGCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCC
63 TCTGGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCT
* *
20128832 AGTCTAAGCACAC-AGAGTTCATTCCCAGTCTAAGATCGGATCAGATCAGATCAGATCGAGGGTT
128 AGTCTAAGCATACGA-AGTTCATT-CCAGTCT-A-A---GATCAGA-C----CAGACCGAGGGTT
* * * ** * * * * * * * *
20128896 GCGA-CAGTAGGATCGACAGCACG-TAGGAAGACCGGGCAGGTCCCCGGCTTGTGCTTTTTGCCT
181 -CCACCAGTAAGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCC
**** * * * * *
20128959 CTCCGTTTGACTGAGCGCGCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
245 CTCCAACCGACTAAGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
** *
20129024 ATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAAGACCGACAGCACGGAGAGGGGGACCG
310 ATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCG
** * * * *
20129089 GGCCGATCTTTGACTTGCGCATTACGCCTCTTCGGTCAGCTCAGTGACT-GCACGCT-AGTTTCA
375 GGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCAGCTCAGCG-CTCGAACGCTCA-TTTCA
* ** *
20129152 TGGGTTGACTTATGCATACAGAGTTAATTCCCAGTCTAAGATGGGACCGGACCAAGGGTTACGGT
438 TGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGT
* * * * * * *
20129217 AGCAGGATTGACAGCATGCAAGGGGGGACCGGGTCGAT-TCTCGGCTTGTGCATTCTGCCTCTCC
503 AG-AGGATCGACAGCACGC-AGAGGGGA-CAGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCC
* * ** *
20129281 AGCCAGCTGAGCCCCCGTACGCTATTTTCATGGGTTGGCTTGGGCATACGGAGTTCATTCCATGT
564 AGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCATGT
*
20129346 CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGAAGAACC
629 CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGAAGGACC
* * * * * *
20129385 GACAGTGGGATCGGCAGCACACAGAAGGGGACCGGGCTAATCCC-CTTGCGCATTATGCCTATCT
1 GGCAGCGAGATCGGCAGCACGCAGAAGGGGACCGGGCTGATCCCGCTTGCGCATTATGCCTCTCT
* * * *
20129449 GGCCAGCTGAGCACCCATACGCTCGTTTCATGGGTTGACTTCGACATACGGAGTTCATCCCTAGT
66 GGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGT
* **
20129514 CTAAGCATACGAAGTTCATTCTCAATCTAAGATCAGACTGGACCGAGGGTTACCACCA-TAAGAT
131 CTAAGCATACGAAGTTCATTC-CAGTCTAAGATCAGACCAGACCGAGGGTT-CCACCAGTAAGAT
* * * * * *
20129578 CGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTACCTCTCCCACGGACTAA
194 CGACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCCCTCCAACCGACTAA
*
20129643 GCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCA
259 GCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * * * * *
20129708 GTCGGACCGAGGGTTGTGGCAGCGGGACCTG-CAGCACACAAAGGGGGACCGAGCCGATCGCTGG
324 GCCAGACTGAGGGTTGTGGCAGCGGGACC-GACAGCACGCAGAGGGGGACCGGGCCGATCCCTGG
* * * *
20129772 CTTGCGCATTATGCCTCTTCGATCAACTCAACGCTCGTACGCTCATTTCATGGGTTGACTTATGC
388 CTTGCGCATTATGCCTCTTCGGTCAGCTCAGCGCTCGAACGCTCATTTCATGGGTTGACTTATGC
* * **
20129837 ATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGC
453 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAG-AGGATCGACAGC
* * * * * *
20129902 ACGCAGTAGGGGACTAGGCCAATCCCTGGCTTACGCATTCTACCTCTCCGGCCAGTTGAGCGCTC
517 ACGCAG-AGGGGAC-AGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCC
* * * *
20129967 GCGCGCTCGATTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGA
580 GCACGCTCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* *
20130032 CCGAAGGTTGTGGCAGTAGGACC
645 CCGAGGGTTGTGGCAGAAGGACC
** * * *
20130055 GGCAGCGAGATCGATAGCACGCAGAGGGGGATCGGGCTGATCCCTGACTTACGCATTATGCCTCT
1 GGCAGCGAGATCGGCAGCACGCAGAAGGGGACCGGGCTGATCCC-G-CTTGCGCATTATGCCTCT
** * * *
20130120 CCAGTCGGCCTCTCCGGTCGATTGAGTGCTCGCACGCTCGTTT-GTGGGTTGACTTAGGCATACG
64 -C--T-GG-----CCGG-C---TGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACG
* **
20130184 GAGTTCATCCCTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGT
116 GAGTTCATCCCTAGTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGT
* ** * * *
20130249 TGCGTCAGTAGGATCGACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCC
180 TCCACCAGTAAGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCC
* * * * * * **
20130314 CTCCAACCGATTGAGCGCCCGCACACCCATTTCGTGCATTGGCTTAGGCATAGGGA-TTCATTCC
245 CTCCAACCGACTAAGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
* * *
20130378 ATGTCTAAGCCCCAGCCAGACTGAGGTTTGTGGCAGCGGGATCGACAGTACGCAGAGGGGGACCG
310 ATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCG
* * * * * *
20130443 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGT-AGGTTCAGCGCCCGAATGCTCGTTTCGT
375 GGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCA-GCTCAGCGCTCGAACGCTCATTTCAT
* * * ** * * *
20130507 TGGTTGACTTATGCATACAGAGTTCATTGCCAGTCTAAGATCAAATGGGATCGAAGGTTACGATA
439 GGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTA
* * * * * * * *
20130572 GCGAGATCTACAGCACGCAAAAGGGACCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGT
504 GAG-GATCGACAGCACGCAGAGGGGACAGG-CCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGC
* *
20130637 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC-TGAGGCATACGGAGTTCATTCCATGTCT
567 CAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTG-GGCATACGGAGTTCATTCCATGTCT
* * * * *
20130701 AAGCCCCGGTCGGACTGAGGGTTGTGGCAGCAGGACT
631 AAGCCCCAGCCGGACCGAGGGTTGTGGCAGAAGGACC
20130738 GGCAGCGAGATCGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
1 GGCAGCGAGATCGGCAGCACGCAGAAGGGGACCGGGCTGAT-CCC-GCTTGCGCATTATGCCTCT
* ** * * * * * *
20130803 CCGATCGGCTGGGCACCCGTACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCAA
64 CTGGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTA
*
20130867 TGTCTAAGCATACGGAGTTCATTCCAGTCTAAGAT
129 -GTCTAAGCATACGAAGTTCATTCCAGTCTAAGAT
20130902 TTGGAGCCAC
Statistics
Matches: 1252, Mismatches: 228, Indels: 86
0.80 0.15 0.05
Matches are distributed among these distances:
669 31 0.02
670 444 0.35
671 51 0.04
673 18 0.01
674 11 0.01
676 1 0.00
677 3 0.00
678 2 0.00
679 96 0.08
680 1 0.00
681 1 0.00
682 41 0.03
683 176 0.14
684 187 0.15
685 172 0.14
686 17 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (667 bp):
GGCAGCGAGATCGGCAGCACGCAGAAGGGGACCGGGCTGATCCCGCTTGCGCATTATGCCTCTCT
GGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGT
CTAAGCATACGAAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTCCACCAGTAAGATCG
ACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCCCTCCAACCGACTAAGC
ACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
CAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTT
GCGCATTATGCCTCTTCGGTCAGCTCAGCGCTCGAACGCTCATTTCATGGGTTGACTTATGCATA
CAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGAGGATCGACAGCACGC
AGAGGGGACAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
GTTGTGGCAGAAGGACC
Found at i:20130505 original size:158 final size:156
Alignment explanation
Indices: 20130259--20130875 Score: 495
Period size: 158 Copynumber: 3.8 Consensus size: 156
20130249 TGCGTCAGTA
* * * ** *
20130259 GGATCGACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCCCTCCAACCGA
1 GGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGG
* * * * *
20130324 TTGAGCGCCCGCACACCCATTTCGTGCATTGGCTTAGGCATAGGGA-TTCATTCCATGTCTAAGC
66 TTGAGCGCCCGCACGCTCGTTTCGTG-GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* *
20130388 CCCAGCCAGACTGAGGTTTGTGGCAGCG
130 CCCAGTCGGACTGAGG-TTGTGGCAGCG
* * * * *
20130416 GGATCGACAGTACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTAG
1 GGATCGACAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCG
* * * * * *
20130481 GTTCAGCGCCCGAATGCTCGTTTCGTTGGTTGACTTATGCATACAGAGTTCATTGCCA-GTCTAA
65 GTTGAGCGCCCGCACGCTCGTTTCG-TGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
** * * * ** **
20130545 GATCAAATGGGA-TCGAAGGTTACGATAGCG
128 GCCCCAGTCGGACT-G-AGGTTGTGGCAGCG
* * ** * *
20130575 AGATCTACAGCACGCAAAAGGGACCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGG
1 GGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGG
* * *
20130640 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TTGAGCGCCCGCACGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
20130705 CCCGGTCGGACTGAGGGTTGTGGCAGCAGGACTGGCAG
130 CCCAGTCGGACTGA-GGTTGT-G--GC---A---GC-G
* * * *
20130743 CGAGATCGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCC-GA
1 -G-GATCGACAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAG-
* * * * * * * *
20130807 TCGGCTGGGCACCCGTACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCT
62 TCGGTTGAGCGCCCGCACGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
20130872 AAGC
126 AAGC
20130876 ATACGGAGTT
Statistics
Matches: 358, Mismatches: 78, Indels: 34
0.76 0.17 0.07
Matches are distributed among these distances:
157 20 0.06
158 172 0.48
159 42 0.12
160 6 0.02
164 1 0.00
167 2 0.01
168 1 0.00
170 14 0.04
171 100 0.28
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGG
TTGAGCGCCCGCACGCTCGTTTCGTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGTCGGACTGAGGTTGTGGCAGCG
Found at i:20130878 original size:26 final size:25
Alignment explanation
Indices: 20130848--20130899 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20130838 GTTGGCTTAG
20130848 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAA-GTCTAA
*
20130874 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCAAGTCTAA
20130899 G
1 G
20130900 ATTTGGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCAAGTCTAA
Found at i:20130985 original size:11 final size:11
Alignment explanation
Indices: 20130969--20130998 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
20130959 CCCGGGGCAC
20130969 CATCGCCGAAG
1 CATCGCCGAAG
20130980 CATCGCCGAAG
1 CATCGCCGAAG
*
20130991 CAACGCCG
1 CATCGCCG
20130999 GAGAGCCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.40, G:0.27, T:0.07
Consensus pattern (11 bp):
CATCGCCGAAG
Found at i:20131107 original size:12 final size:12
Alignment explanation
Indices: 20131086--20131137 Score: 77
Period size: 12 Copynumber: 4.3 Consensus size: 12
20131076 GCTGGTACTC
*
20131086 GGCCCTTATATT
1 GGCCCCTATATT
20131098 GGCCCCTATATT
1 GGCCCCTATATT
*
20131110 GGCCCTTATATT
1 GGCCCCTATATT
*
20131122 GGGCCCTATATT
1 GGCCCCTATATT
20131134 GGCC
1 GGCC
20131138 GTGGGTTGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (12 bp):
GGCCCCTATATT
Found at i:20131118 original size:24 final size:24
Alignment explanation
Indices: 20131086--20131137 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
20131076 GCTGGTACTC
20131086 GGCCCTTATATTGGCCCCTATATT
1 GGCCCTTATATTGGCCCCTATATT
*
20131110 GGCCCTTATATTGGGCCCTATATT
1 GGCCCTTATATTGGCCCCTATATT
20131134 GGCC
1 GGCC
20131138 GTGGGTTGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (24 bp):
GGCCCTTATATTGGCCCCTATATT
Found at i:20131189 original size:26 final size:26
Alignment explanation
Indices: 20131152--20131204 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20131142 GTTGACTTAG
20131152 GCATAAGAAGTTCATCCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
*
20131178 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATA-AGAAGTTCATCCCCAGTCTAA
20131204 G
1 G
20131205 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:20131561 original size:159 final size:156
Alignment explanation
Indices: 20131178--20131553 Score: 382
Period size: 159 Copynumber: 2.4 Consensus size: 156
20131168 CCCAGTCTAA
* *
20131178 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCAGC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGAAGGAT-AGC
* * * * * *
20131242 GGCACGCAGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCC
64 AGCACGAAGGGGGACCGAGCCGACCCTCGGCTTACGCATTATGCCTCTCCAACCGACTCAGCGCC
* *
20131307 CGCACGCCCATTTCGTGGGTTGGCTTAG
129 CGCACGCCCATTTCATGGGTTGACTTAG
* * * ** * **
20131335 GCTTAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGCCAGCGGGACTAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGAAGGA-TAG
* * * * * * * *
20131398 CAGCACGTAAAGGGGGACCGGGCTGACCCTCGGCTTGCGCATTATGCTTTTTCAATCGGCTCAGC
63 CAGCACG--AAGGGGGACCGAGCCGACCCTCGGCTTACGCATTATGCCTCTCCAACCGACTCAGC
* * *
20131463 GCCCGCACGCTCGTTTCATGGGTTGACTTAT
126 GCCCGCACGCCCATTTCATGGGTTGACTTAG
*
20131494 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGT-AGCAGAAGGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGA-CAGAAGGAT
20131554 TGACAGCAAG
Statistics
Matches: 173, Mismatches: 37, Indels: 17
0.76 0.16 0.07
Matches are distributed among these distances:
156 3 0.02
157 49 0.28
158 7 0.04
159 111 0.64
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGAAGGATAGCAG
CACGAAGGGGGACCGAGCCGACCCTCGGCTTACGCATTATGCCTCTCCAACCGACTCAGCGCCCG
CACGCCCATTTCATGGGTTGACTTAG
Found at i:20131681 original size:26 final size:26
Alignment explanation
Indices: 20131652--20131704 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20131642 GTTGGCTTAG
*
20131652 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20131678 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20131704 G
1 G
20131705 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20132424 original size:26 final size:26
Alignment explanation
Indices: 20132387--20132439 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20132377 GTTGACTTAG
20132387 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20132413 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
20132439 G
1 G
20132440 ATCAAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20133595 original size:26 final size:25
Alignment explanation
Indices: 20133559--20133610 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20133549 GTTGGCTTAG
20133559 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAA-GTCTAA
*
20133585 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCAAGTCTAA
20133610 G
1 G
20133611 ATTTGGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCAAGTCTAA
Found at i:20133995 original size:22 final size:22
Alignment explanation
Indices: 20133967--20134009 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
20133957 TTTATGCATG
20133967 CCTCTACCAAATACAAGGATCA
1 CCTCTACCAAATACAAGGATCA
20133989 CCTCTACCAAATACAAGGATC
1 CCTCTACCAAATACAAGGATC
20134010 CCCGACTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.33, G:0.09, T:0.19
Consensus pattern (22 bp):
CCTCTACCAAATACAAGGATCA
Found at i:20135010 original size:26 final size:26
Alignment explanation
Indices: 20134974--20135026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20134964 GTTGACTTAG
20134974 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20135000 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20135026 G
1 G
20135027 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20141159 original size:26 final size:26
Alignment explanation
Indices: 20141123--20141175 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20141113 GTTGGCTTAG
20141123 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20141149 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20141175 G
1 G
20141176 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20142041 original size:26 final size:26
Alignment explanation
Indices: 20142005--20142057 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20141995 GTTGGCTTAG
20142005 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20142031 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20142057 G
1 G
20142058 ATTTTGAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20142769 original size:26 final size:26
Alignment explanation
Indices: 20142720--20142772 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20142710 GTTGACTTAG
* *
20142720 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20142746 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20142772 G
1 G
20142773 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20143400 original size:158 final size:158
Alignment explanation
Indices: 20143229--20143624 Score: 431
Period size: 158 Copynumber: 2.5 Consensus size: 158
20143219 TGTACGTCCG
* * *
20143229 TTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCAATGTCGAAGCCCCAACCGGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
*** *
20143294 ATGGTAGC-GGACCGACAGCACGCAGAGGAGGATTGGGCCGATCCCTGGCTTGCACATTATGCCT
66 ATGGTAGCAGGACCGACAGCACGCAG-GGAGGACCAGGCCGATCCCTAGCTTGCACATTATGCCT
* * * *
20143358 CTCCGATAGGCTCAGCGCCCGAATGCTTA
130 CTCCGACAGGCTCAGCACCCGAACGCTCA
* * ** *
20143387 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGG
* * * * * * ** *
20143450 TTACGGTAGCAAGATCGACAGCACGCAGGGGGGACCAGGTCGGTCCCTAGCTTGTGCATTTTGCC
64 TTATGGTAGCAGGACCGACAGCACGCAGGGAGGACCAGGCCGATCCCTAGCTTGCACATTATGCC
* * * * *
20143515 TCTCCGGCCGGTTGAGCACCCGCACGCTCA
129 TCTCCGACAGGCTCAGCACCCGAACGCTCA
*
20143545 TTTCGTGGGTTCG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
1 TTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
* *
20143609 TGTGGCAGCAGGACCG
65 TATGGTAGCAGGACCG
20143625 GCAACAAGAT
Statistics
Matches: 191, Mismatches: 41, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.03
158 166 0.87
159 20 0.10
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
ATGGTAGCAGGACCGACAGCACGCAGGGAGGACCAGGCCGATCCCTAGCTTGCACATTATGCCTC
TCCGACAGGCTCAGCACCCGAACGCTCA
Found at i:20144273 original size:182 final size:183
Alignment explanation
Indices: 20143964--20144308 Score: 435
Period size: 182 Copynumber: 1.9 Consensus size: 183
20143954 GTTGAGTTAG
* *
20143964 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
* ** * * *
20144029 GCACGCAGGGGGACCGGGTCGATCCCCAGCTTACACATTCTGCCTCTCTAGTCGGCTGAGCGCCC
66 ACACGCAGGGGGACCAAGCCGATCCCCAGCTTACACATTCTACCTCTCTAGCCGGCTGAGCGCCC
* * * * *
20144094 GTACGCTC-TTTCATGGGTTGGCTTAGGCATACAGTGTTCATTCCATGTCTAA
131 GCACACTCGTGTCATAGGTTGACTTAGGCATACAGTGTTCATTCCATGTCTAA
* * * * * * *
20144146 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGA-CTGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATC-GAC
* * * *
20144210 AACACGTAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTACCTCTCT-GACCGGTTGAGCGC
65 AACACGCAGGGGGACCAAGCCGATCCCCAGCTTACACATTCTACCTCTCTAG-CCGGCTGAGCGC
20144274 CCGCACACTCGTGTCATAGGTTGACTTAGGCATAC
129 CCGCACACTCGTGTCATAGGTTGACTTAGGCATAC
20144309 GAAGTTCATC
Statistics
Matches: 136, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
181 2 0.01
182 113 0.83
183 21 0.15
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (183 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
ACACGCAGGGGGACCAAGCCGATCCCCAGCTTACACATTCTACCTCTCTAGCCGGCTGAGCGCCC
GCACACTCGTGTCATAGGTTGACTTAGGCATACAGTGTTCATTCCATGTCTAA
Found at i:20144486 original size:159 final size:157
Alignment explanation
Indices: 20144146--20144488 Score: 384
Period size: 159 Copynumber: 2.2 Consensus size: 157
20144136 CCATGTCTAA
* * * ** * *
20144146 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGACTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGACTGACA
* * *
20144211 ACACGTAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGACCGGTTGAGCGCCC
66 ACACGTAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGCTTGAGCGCCA
20144276 GCACACTCGTGTCATAGGTTGACTTAG
131 GCACACTCGTGTCATAGGTTGACTTAG
* *
20144303 GCATACGAAGTTCATCCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGA-TCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGACT-GAC
* ** ** * * *
20144367 AGCACGTAGGGGGGGACCGGGTTGATCCCCAGCTTGCGCATTCTGCCTTTCCGGCCTGCTT-AGC
65 AACACGTA--GGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACC-GCTTGAGC
* * * * *
20144431 GCTAGCACGCTCGTTTCATGGGTTGGCTTAG
127 GCCAGCACACTCGTGTCATAGGTTGACTTAG
* **
20144462 GCATATGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
20144489 CATACGGAGT
Statistics
Matches: 152, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
156 1 0.01
157 60 0.39
159 88 0.58
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGACTGACA
ACACGTAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGCTTGAGCGCCA
GCACACTCGTGTCATAGGTTGACTTAG
Found at i:20144492 original size:26 final size:26
Alignment explanation
Indices: 20144462--20144514 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20144452 GTTGGCTTAG
* **
20144462 GCATATGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20144488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20144514 G
1 G
20144515 ATCTGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20146258 original size:159 final size:159
Alignment explanation
Indices: 20145712--20146397 Score: 412
Period size: 159 Copynumber: 4.3 Consensus size: 159
20145702 GGGCATCCGC
* * *
20145712 ACGCTCGTTTCA-TGGGTT-GACTTAGGCATACGAAGTTCATTCCCA-GTCTCAGA-TC-AGACT
1 ACGCTCGTTT-AGTGGGTTAG-CTTAGGCATACGGAGTTCATT-CCATGTCT-AAACCCTAG-CT
* * ** * * ** * * *
20145772 GGACCGAGGGTTGCAACAGTAGGATCGACAGCATGCAG-GGGGGACTGGGCCGATCCCCGACTTG
61 GAATCGAGGGTTGCAGTAGCAGGATCGACAACACACAGAGGGGGACCGGGTCGATCCCCGGCTTG
* ** * * *
20145836 CGCATTCTGCCTCTCC-AGTCGGTTGAGCACCCGC
126 CGCATTCTGCCTCTCCGA-CCGACTCAGCGCCCGT
* * * * * * * * * *
20145870 ACGCCCGTTTCA-TGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGGCTAAGCCCCAGCCGGAC
1 ACGCTCGTTT-AGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCTAGCTGAAT
* ** * * * * *** ** *
20145934 CGAAGGTTGTGGCAGCAGGATCGACAGCACACACAGAGGGATTAGGTCGATCCCCAACTTGTGCA
65 CGAGGGTTGCAGTAGCAGGATCGACAACACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCA
* * * * **
20145999 TTATGCCTCTCCGGCCGGCTCAAAC-CCCAC
130 TTCTGCCTCTCCGACCGACTC-AGCGCCCGT
* * *
20146029 ACGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGA--TTGAACTG
1 ACGCTCGTTTAGTGGGTTAG-CTTAGGCATACGGAGTTCATT-CCATGTCTAA-ACCCT-AGCTG
* * * * *** *
20146090 GA-CTAAGGGTTGCAGTAGCAGGATTGATAACATGTAG-GGGTGGACCGGGTCGGTCCCCGGCTT
62 AATC-GAGGGTTGCAGTAGCAGGATCGACAACACACAGAGGG-GGACCGGGTCGATCCCCGGCTT
* * * *
20146153 GCGCATTCTGCCTCTCTGACTGGCTCAGTGCCCGT
125 GCGCATTCTGCCTCTCCGACCGACTCAGCGCCCGT
* ** * *
20146188 ACGCTCGTTTCGTTTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGCTGAATC
1 ACGCTCGTTTAGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCTAGCTGAATC
** ** * * * * *
20146253 GAGGGTTGTGGTAGTGGGATCGGCAGCACACAGAGGGGGACCGGTTCGATCCCTGGCTTGTGCAT
66 GAGGGTTGCAGTAGCAGGATCGACAACACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCAT
*
20146318 TCTGCCTCTCCGACCGACTGAGCGCCCGT
131 TCTGCCTCTCCGACCGACTCAGCGCCCGT
* *
20146347 ACGCTTGTTTAGTGGGTTAGCTTAGGGATACGGAGTTCATTCCATGTCTAA
1 ACGCTCGTTTAGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
20146398 GCATACAAAG
Statistics
Matches: 405, Mismatches: 102, Indels: 41
0.74 0.19 0.07
Matches are distributed among these distances:
157 4 0.01
158 79 0.20
159 311 0.77
160 11 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
ACGCTCGTTTAGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCTAGCTGAATC
GAGGGTTGCAGTAGCAGGATCGACAACACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCAT
TCTGCCTCTCCGACCGACTCAGCGCCCGT
Found at i:20146315 original size:318 final size:317
Alignment explanation
Indices: 20145711--20146398 Score: 758
Period size: 318 Copynumber: 2.2 Consensus size: 317
20145701 TGGGCATCCG
* * *
20145711 CACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTCAGATCAGACTGGAC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
* * * *
20145776 CGAGGGTTGCAACAGTAGGATCGACAGCATGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCAT
66 CAAGGGTTGCAACAGCAGGATCGACAACATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCAT
* * *
20145841 TCTGCCTCTCCAGTCGGTTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGC
131 TCTGCCTCTCCACTCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGC
* *
20145906 TCATTCCATGGCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAGGATCGACAGCACACACAGA
196 TCATTCCATGGCTAAACCCCAGCCGAACCGAAGGTTGTGGCAGCAGGATCGACAGCACACACAGA
* * *
20145971 GGGATTAGGTCGATCCCCAACTTGTGCATTATGCCTCTCCGGCCGGCTCAAAC-CCCA
261 GGGATCAGGTCGATCCCCAACTTGTGCATTATGCCTCTCCGACCGACT-AAACGCCCA
*
20146028 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGA
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGA
* ** * * * * * *
20146092 CTAAGGGTTGCAGTAGCAGGATTGATAACATGTAGGGGTGGACCGGGTCGGTCCCCGGCTTGCGC
65 CCAAGGGTTGCAACAGCAGGATCGACAACATGCAGGGG-GGACCGGGCCGATCCCCGACTTGCGC
* ** * * * **
20146157 ATTCTGCCTCTCTGACT-GGCTCAGTGCCCGTACGCTCGTTTCGTTTGTTGGCTTAGGCATAGGG
129 ATTCTGCCTCTC-CACTCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
* * * * * * * ** * *
20146221 AGTTCATTCCATGTCTAAACCCTAGCTGAATCGAGGGTTGTGGTAGTGGGATCGGCAGCACACAG
193 AGCTCATTCCATGGCTAAACCCCAGCCGAACCGAAGGTTGTGGCAGCAGGATCGACAGCACACAC
* * *** * * * *
20146286 AGGGGGA-CCGGTTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
258 AGAGGGATCAGG-TCGATCCCCAACTTGTGCATTATGCCTCTCCGACCGACTAAACGCCCA
* * * *
20146346 TACGCTTGTTTAGTGGGTT-AGCTTAGGGATACGGAGTTCATT-CCATGTCTAAG
1 CACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
20146399 CATACAAAGT
Statistics
Matches: 307, Mismatches: 57, Indels: 13
0.81 0.15 0.03
Matches are distributed among these distances:
316 1 0.00
317 95 0.31
318 209 0.68
319 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (317 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
CAAGGGTTGCAACAGCAGGATCGACAACATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCAT
TCTGCCTCTCCACTCGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGC
TCATTCCATGGCTAAACCCCAGCCGAACCGAAGGTTGTGGCAGCAGGATCGACAGCACACACAGA
GGGATCAGGTCGATCCCCAACTTGTGCATTATGCCTCTCCGACCGACTAAACGCCCA
Found at i:20147126 original size:26 final size:26
Alignment explanation
Indices: 20147097--20147149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20147087 GTTGACTTAG
*
20147097 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
20147123 GCATACGGAGTTTATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
20147149 G
1 G
20147150 ATCATATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:20147424 original size:159 final size:159
Alignment explanation
Indices: 20147159--20148796 Score: 578
Period size: 159 Copynumber: 9.9 Consensus size: 159
20147149 GATCATATCG
* * * * * * *
20147159 GACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG-GGGGGACCGGACCGATCCCCGGCTTGC
1 GACCGAGGGTTGCGGCAGTAGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCCCCGGCTTAC
* * *
20147223 GCATTCTGCCTCTTCG-GTCGG-TTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA
66 GCATTCTGCCTCTCCGACT-GGCTT-AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
* *
20147286 GGGAGTTCATTCTATGTCTAAGCCCCAGCCA
129 CGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
20147317 GACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTCC
1 GACCGAGGGTTGCGGCAGTAGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCCCCGGCTTAC
* * ** * *
20147382 GCATTTTACCTCTCCGACTGGCTTAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATG
66 GCATTCTGCCTCTCCGACTGGCTTAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
* * ** * *
20147447 AAGTTCATTCCCA-GTGTAAG-ATCTGATCA
131 GAGTTCATT-CCATGTCTAAGCCCCAG-CCA
* * * *
20147476 GACCGAAGGTTGCGACAGTAGTA-CTAGCAGCAAGATCGGCAGCACGTAGGGGGGACCGGGCCGA
1 GACCGAGGGTTGCGGCAGTAGGACCGA-CAGC---A-C-GCAG-A---A--GGGGACCGGGCCGA
* * *
20147540 TCCTCGGCTTACGCATTCTGCCTCTCCGACTGACTGAGCGCCCGCACGCTCATTTCATGGGTTGG
54 TCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTTAGCGCCCGCACGCTCATTTCATGGGTTGG
* * **
20147605 CTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAACTG
119 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * *
20147646 GACTGAGGGTTGCGGCAGTAGGACCAGCAATGGGATCGACAGCACGCAGAAGGGGATCGGGCTGA
1 GACCGAGGGTTGCGGCAGTAGG---A-C--------CGACAGCACGCAGAAGGGGACCGGGCCGA
** * * * * *
20147711 TCTTCAGCTTACGCATTATGCCTCTGCAGCTGGCCTCTGCGGCTGGCTGAGCGCCCGCATGCTCG
54 TCCCCGGCTTACGC---AT---TCTGC--CT---CTC--CGACTGGCTTAGCGCCCGCACGCTCA
** ** * * * **** *
20147776 TTTGGTGACTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATTTG-GA
106 TTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCCCCAGCCA
** * * * * **
20147829 GTTC-A---TTCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAGAAGGTTCGGCAGCACGT
1 GACCGAGGGTTGC-GGC--AG-TAGGACC-GA-C-A--G-CACG-CAGAAGG---GG-A-C-C--
** * * ** *
20147890 AGGGGGGATCGAGCTGATCCTCGACTTACGCATTTTGCCTCTCCGACCAGCTTAGCACCCGCACG
47 -GGGCCGAT----C----CC-CGGCTTACGCATTCTGCCTCTCCGACTGGCTTAGCGCCCGCACG
* *
20147955 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
102 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * * * *
20148013 GACCGAGGGTTGCAGCAG-CGGTACCGGCAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTG
1 GACCGAGGGTTGCGGCAGTAGG-ACCGACAGCACGCAGAAGGGGACCGGGCCGATCCCCGGCTTA
* * * * ** ** * *
20148077 CGCATTATACCTCTCCGACTAGCTCAATGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCATAC
65 CGCATTCTGCCTCTCCGACTGGCTTAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
** * **
20148142 GGAGTTCATTCC-TAGTCTAAG-ATCGGACTG
130 GGAGTTCATTCCAT-GTCTAAGCCCCAG-CCA
* * * ** ** * * * * **
20148172 GACTGACGGTTACAACAGTAGGATTGACAGCACGCAG-GGGGGACCGGACGGGTCCCTAGCTTAC
1 GACCGAGGGTTGCGGCAGTAGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCCCCGGCTTAC
* * * * * * *
20148236 ACATTCTGCCTCTCCGACAGG-TTGTGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
66 GCATTCTGCCTCTCCGACTGGCTT-AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
* ** * *
20148300 AGAGTTCATTCCCA-GTCTAAG-ATCGGATCA
130 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCA
* * * * * * * * * **
20148330 GACCGAGGGTTACGACAGTAGGATCGATAGC-CGCAG-CGGGGCCCAGGCCTATCCCTGGCTTGT
1 GACCGAGGGTTGCGGCAGTAGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCCCCGGCTTAC
* * * * * *
20148393 GCACTCTGCCTCTCC-AGCCGG-TTGAGCACCCGCACACCCATTTCCTGGGTTGGCTTAGGCATA
66 GCATTCTGCCTCTCCGA-CTGGCTT-AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
* * * *
20148456 GGGAGTTGATTCCATGTCTAAGCCCCAGTCG
129 CGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * ** * * * *
20148487 GACTGAGGGTTGTGGCAGCGGGATCGATAGCACGCAG-AGAGGGATCGGGTCGATCCCCGGCTTA
1 GACCGAGGGTTGCGGCAGTAGGACCGACAGCACGCAGAAG-GGGACCGGGCCGATCCCCGGCTTA
* * * * * * * * * * * * *
20148551 CACATTATGCCTTTTCGGCTAGCTCAGTGCCTGTACGCTCGTTTCACGGGTTGACTTAGGCATAC
65 CGCATTCTGCCTCTCCGACTGGCTTAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
***
20148616 GGAGTTCATTCCCA-GTCTAAG-ATTAGACCA
130 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCA
* * * * * * * * * * * *
20148646 GACTGAGGGTTGCAGTAGCAAGATCGATAGCACGTAG-GGGGTGATCGGGTCGATCCCCGGCTTG
1 GACCGAGGGTTGCGGCAGTAGGACCGACAGCACGCAGAAGGG-GACCGGGCCGATCCCCGGCTTA
* * * * * * ** * *
20148710 TGCATTCTGCCTCTTCGGCTAG-TTGAGCACCCGTACGCTTGTTTCGTGGGTTGCCTTAGGCATA
65 CGCATTCTGCCTCTCCGACTGGCTT-AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
20148774 CGGAGTTCATTCCATGTCTAAGC
129 CGGAGTTCATTCCATGTCTAAGC
20148797 ATACGGAGTT
Statistics
Matches: 1101, Mismatches: 278, Indels: 200
0.70 0.18 0.13
Matches are distributed among these distances:
156 4 0.00
157 117 0.11
158 171 0.16
159 411 0.37
160 13 0.01
162 1 0.00
163 1 0.00
164 5 0.00
165 1 0.00
168 6 0.01
169 3 0.00
170 111 0.10
171 27 0.02
172 3 0.00
173 4 0.00
174 5 0.00
176 2 0.00
177 17 0.02
178 10 0.01
179 8 0.01
180 3 0.00
181 3 0.00
182 15 0.01
183 61 0.06
184 63 0.06
185 9 0.01
187 7 0.01
188 5 0.00
190 4 0.00
191 1 0.00
193 2 0.00
196 8 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGCGGCAGTAGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCCCCGGCTTAC
GCATTCTGCCTCTCCGACTGGCTTAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:20147659 original size:170 final size:171
Alignment explanation
Indices: 20147341--20147735 Score: 436
Period size: 170 Copynumber: 2.3 Consensus size: 171
20147331 GCAGTGGGAC
* * * * * * *
20147341 CGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTCCGCATTTTACCTCTCCGACTGGCTT
1 CGACAGCACGCAGAAGGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGACTGACTG
** * * *
20147406 AGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTGTAAGATCT
66 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTGTAAGACCC
* * * *
20147471 GATCAGACCGAAGGTTGCGACAGTAGTACTAGCAGCAAGAT
131 AATCAGACCGAAGGTTGCGACAGTAGGACCAGCAACAAGAT
* * * * *
20147512 CGGCAGCACGTAG-GGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACTGACTG
1 CGACAGCACGCAGAAGGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGACTGACTG
* * * *
20147576 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTTTAAGCCC
66 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTGTAAGACC
* * * * ***
20147640 CAA-CTGGACTGAGGGTTGCGGCAGTAGGACCAGCAATGGGAT
130 CAATC-AGACCGAAGGTTGCGACAGTAGGACCAGCAACAAGAT
* * *
20147682 CGACAGCACGCAGAAGGGGATCGGGCTGATCTTCAGCTTACGCATTATGCCTCT
1 CGACAGCACGCAGAAGGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCT
20147736 GCAGCTGGCC
Statistics
Matches: 182, Mismatches: 39, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
169 4 0.02
170 133 0.73
171 45 0.25
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (171 bp):
CGACAGCACGCAGAAGGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGACTGACTG
AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTGTAAGACCC
AATCAGACCGAAGGTTGCGACAGTAGGACCAGCAACAAGAT
Found at i:20147823 original size:26 final size:25
Alignment explanation
Indices: 20147794--20147845 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
20147784 CTTGACTTAG
20147794 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCAT-CCCAGTCTAA
** * *
20147820 GCATTTGGAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATCCCAGTCTAA
20147845 G
1 G
20147846 ATCGAACCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:20148462 original size:157 final size:158
Alignment explanation
Indices: 20147826--20148477 Score: 407
Period size: 158 Copynumber: 4.1 Consensus size: 158
20147816 CTAAGCATTT
* * * * * * * * * *
20147826 GGAGTTCATT-CCAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAGAAGGTTCGGCAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGACGGTTACAACAGTAGGATCGACAGCACGC
* * * * * * * * *
20147890 AGGGGGGATC-GAGCTGAT-CCTCGACTTACGCATTTTGCCTCTCCGACCAGCTT-AGCACCCGC
66 AGCGGGGACCGGA-CCGATCCCTAG-CTTACACACTCTGCCTCTCCGA-CAGGTTGAGCACCCAC
* * *
20147952 ACGCCCATTTCATGGGTTGGCTTAGGCATAG
128 ACACCCATTTCGTGGGTTGGCTTAGGCATAC
* ** * * * * * * *
20147983 GGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGCAGCAG-CGGTACCGGCAGCA
1 GGAGTTCATTCCCA-GTCTAAGATCGGA-CTAGACCGACGGTTACAACAGTAGG-ATCGACAGCA
* * * * * * * * * **
20148045 CGCAGAGGGGGACCAGG-TCGATCCCCAGCTTGCGCATTATACCTCTCCGACTAGCTCAATG--C
63 CGCAG-CGGGGACC-GGACCGATCCCTAGCTTACACACTCTGCCTCTCCGAC-AGGTTGA-GCAC
* * * *
20148107 CCAAACGCTCATTTCGTGGGTTGACTTAGGCATAC
124 CCACACACCCATTTCGTGGGTTGGCTTAGGCATAC
* * * *
20148142 GGAGTTCATTCCTAGTCTAAGATCGGACTGGACTGACGGTTACAACAGTAGGATTGACAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGACGGTTACAACAGTAGGATCGACAGCACGC
* * * * * *
20148207 AGGGGGGACCGGACGGGTCCCTAGCTTACACATTCTGCCTCTCCGACAGGTTGTGCACCCACACG
66 AGCGGGGACCGGACCGATCCCTAGCTTACACACTCTGCCTCTCCGACAGGTTGAGCACCCACACA
* *
20148272 CTCGTTTCGTGGGTTGGCTTAGGCATAC
131 CCCATTTCGTGGGTTGGCTTAGGCATAC
* * * *
20148300 AGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCGAGGGTTACGACAGTAGGATCGATAGC-CG
1 GGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGACGGTTACAACAGTAGGATCGACAGCACG
* * * *** * *
20148363 CAGCGGGGCCCAGG-CCTATCCCTGGCTTGTGCACTCTGCCTCTCC-AGCCGGTTGAGCACCCGC
65 CAGCGGGGACC-GGACCGATCCCTAGCTTACACACTCTGCCTCTCCGA-CAGGTTGAGCACCCAC
* *
20148426 ACACCCATTTCCTGGGTTGGCTTAGGCATAG
128 ACACCCATTTCGTGGGTTGGCTTAGGCATAC
*
20148457 GGAGTTGATT-CCATGTCTAAG
1 GGAGTTCATTCCCA-GTCTAAG
20148478 CCCCAGTCGG
Statistics
Matches: 393, Mismatches: 82, Indels: 40
0.76 0.16 0.08
Matches are distributed among these distances:
156 5 0.01
157 111 0.28
158 158 0.40
159 107 0.27
160 10 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGACGGTTACAACAGTAGGATCGACAGCACGC
AGCGGGGACCGGACCGATCCCTAGCTTACACACTCTGCCTCTCCGACAGGTTGAGCACCCACACA
CCCATTTCGTGGGTTGGCTTAGGCATAC
Found at i:20148798 original size:26 final size:26
Alignment explanation
Indices: 20148769--20148821 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20148759 GTTGCCTTAG
20148769 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20148795 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20148821 G
1 G
20148822 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20149183 original size:26 final size:26
Alignment explanation
Indices: 20149147--20149202 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20149137 TGGGTTGACT
20149147 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
20149173 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
20149199 TAAG
1 TAAG
20149203 TTTAGATCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:20150021 original size:26 final size:26
Alignment explanation
Indices: 20149992--20150041 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20149982 GACTTAGGCA
*
20149992 TACGAAGTTTATCCCCAGTCTAAGCG
1 TACGAAGTTCATCCCCAGTCTAAGCG
* *
20150018 TACGTAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
20150042 ATTGGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCG
Found at i:20150861 original size:171 final size:170
Alignment explanation
Indices: 20150554--20150868 Score: 396
Period size: 171 Copynumber: 1.8 Consensus size: 170
20150544 GACTGGACCG
* * *
20150554 AGGGTTGCGGTAGTAGGACCAGCAGCAGGATCGACAGCACACAGGGGGGACCGAGCTAATCCCCG
1 AGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACACAGGGGGGACCGAGCTAATCCCCG
* * * * * ***
20150619 GCTTGCGCATTCTGCCTCTTCCGTCGGTTGAGGGCCCGCACGCTCATTTCATGGGTTGGGTTAGG
66 GCTTACGCATTATGCCCCTTCCGCCGGCTGAGGGCCCGCACGCTCATTTCATGGGTTCACTTAGG
20150684 CATACGGAGTTCATTCCATGTCTAAGCCCCATCCGGACTA
131 CATACGGAGTTCATTCCATGTCTAAGCCCCATCCGGACTA
* * * * * * *
20150724 AGGGTTGTGGCAGCAGGACCGGTAGCAAGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCC
1 AGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACACAG-GGGGGACCGAGCTAATCCCC
** * * * * *
20150789 GGCTTACGCATTATGCCCCTTTGGCCTGCTGAGTGCCTGCACGCTCTTTTTATGGGTTCACTTAG
65 GGCTTACGCATTATGCCCCTTCCGCCGGCTGAGGGCCCGCACGCTCATTTCATGGGTTCACTTAG
20150854 GCATACGGAGTTCAT
130 GCATACGGAGTTCAT
20150869 CCTCAGTCTA
Statistics
Matches: 119, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
170 37 0.31
171 82 0.69
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (170 bp):
AGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACACAGGGGGGACCGAGCTAATCCCCG
GCTTACGCATTATGCCCCTTCCGCCGGCTGAGGGCCCGCACGCTCATTTCATGGGTTCACTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCCATCCGGACTA
Found at i:20150901 original size:26 final size:26
Alignment explanation
Indices: 20150856--20150906 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20150846 TCACTTAGGC
20150856 ATACGGAGTTCATCCTCAGTCTAAGT
1 ATACGGAGTTCATCCTCAGTCTAAGT
*
20150882 ATACGGAGTTTATTCC-CAGTCTAAG
1 ATACGGAGTTCA-TCCTCAGTCTAAG
20150907 ATCGGACCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATCCTCAGTCTAAGT
Found at i:20151345 original size:158 final size:157
Alignment explanation
Indices: 20150882--20151357 Score: 405
Period size: 158 Copynumber: 3.0 Consensus size: 157
20150872 CAGTCTAAGT
* * * * **
20150882 ATACGGAGTTTATTCCCAGTCTAAGATCGGACCT-AACTGAGGGTTGCA-ACAGCAGGATCAACA
1 ATACGGAGTTCATTCCCATTCTAAGATAGGA-CTGGACCAAGGGTTGCAGACAGCAGGATCAACA
* * *
20150945 GCACGCAGGGGGGACCGGGCTGATCCTCGACTTTCGCATTCTGCCTTTTCGGCTGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGCTGATCCCCGAC-TACGCATTCTGCCTCTTCGGCTGGCTGAGCGCC
* *
20151010 CGCACGCCCGTTTTATGGGTTGGCTTAGGC
129 CGCACGCTCGTTTCATGGGTT-GCTTAGGC
* ** * * * * * *
20151040 ATAGGGAGTTCATT-CCATGTCTAAGCCCCA-G-CTGGAGCAACGGTTG-TGGCAGCAGGACCAG
1 ATACGGAGTTCATTCCCAT-TCTAAG--ATAGGACTGGACCAAGGGTTGCAGACAGCAGGATCAA
** * * * * * * *
20151101 CAGCACTTAGATGGGGACCGGGC-CAACCCTGACTTACGCATTATGCCTCTTCGG-TCGACTCAG
63 CAGCACGCAG-GGGGGACCGGGCTGATCCCCGAC-TACGCATTCTGCCTCTTCGGCT-GGCTGAG
** * * *
20151164 CATCCGGATGCTCATTTCATGGGTTGACTTAGGC
125 CGCCCGCACGCTCGTTTCATGGGTTG-CTTAGGC
* * *
20151198 ATACGGAGTTCATTCCCATTCTAAGATAGGACTGGACCAAGGGTTGCAGTC-GCAGGATCGATAG
1 ATACGGAGTTCATTCCCATTCTAAGATAGGACTGGACCAAGGGTTGCAGACAGCAGGATCAACAG
*
20151262 CACGCAGGGGGGACCGGGCTGGTCCCC-AGCTAGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCC
66 CACGCAGGGGGGACCGGGCTGATCCCCGA-CTA-CGCATTCTGCCTCTTCGGCTGGCTGAGCGCC
* *
20151326 CACACGCTCGTTTCGTGGGTTTGCTTAGGC
129 CGCACGCTCGTTTCATGGG-TTGCTTAGGC
20151356 AT
1 AT
20151358 GTAGAGTTTA
Statistics
Matches: 239, Mismatches: 62, Indels: 34
0.71 0.19 0.10
Matches are distributed among these distances:
156 1 0.00
157 22 0.09
158 194 0.81
159 22 0.09
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
ATACGGAGTTCATTCCCATTCTAAGATAGGACTGGACCAAGGGTTGCAGACAGCAGGATCAACAG
CACGCAGGGGGGACCGGGCTGATCCCCGACTACGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGCTTAGGC
Found at i:20151590 original size:196 final size:195
Alignment explanation
Indices: 20151249--20151705 Score: 517
Period size: 196 Copynumber: 2.3 Consensus size: 195
20151239 GGTTGCAGTC
* * *
20151249 GCAGGATCGATAGCACGCAGGGGGGACCGGGCTGGTCCC-CAGC-TAGCGCATTCTGCCTCTTCG
1 GCAGGATCGATAGCACGCAGGGGGGACCGGGC-GATCCCTGA-CTTA-CGCATTCTGCCTCTCCG
* * * ** *
20151312 GCTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTTGCTTAGGCATGTAGAGTTTATTCCAAGTC
63 GCTGGCTGAGCGCCCACACGCTCCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTC
* * **
20151377 TATGCATACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGACCA
128 TAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCA
*
20151442 GCA
193 ACA
* * *
20151445 GCAGGATCGACAGCACGCAGGAGGGACCGGGTCGATCCCTGACTTACGTATTCTGCCTCTCCGGC
1 GCAGGATCGATAGCACGCAGGGGGGACCGGG-CGATCCCTGACTTACGCATTCTGCCTCTCCGGC
* * * * * *
20151510 TGGCTGAGTGCCCGCATGCTCCTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
65 TGGCTGAGCGCCCACACGCTCCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTA
* * * * * *
20151575 AGCATACGGAGTTCATTCCCAGTGTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGACCAAC
130 AGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAAC
20151640 A
195 A
* * * * *
20151641 GCAGGATC-AGTAGCACGTAGGGGGGATCAGGCCGAT-CCTCGAATTATGCATTCTGCCTCTCCG
1 GCAGGATCGA-TAGCACGCAGGGGGGA-CCGGGCGATCCCT-GACTTACGCATTCTGCCTCTCCG
20151704 GC
63 GC
20151706 CAACTTCTCC
Statistics
Matches: 218, Mismatches: 37, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
195 4 0.02
196 207 0.95
197 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (195 bp):
GCAGGATCGATAGCACGCAGGGGGGACCGGGCGATCCCTGACTTACGCATTCTGCCTCTCCGGCT
GGCTGAGCGCCCACACGCTCCTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAA
GCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAACA
Found at i:20151789 original size:26 final size:26
Alignment explanation
Indices: 20151759--20151811 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20151749 GTTGACTTAG
*
20151759 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
20151785 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20151811 G
1 G
20151812 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20152838 original size:26 final size:26
Alignment explanation
Indices: 20152804--20152856 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20152794 GTTGACTTAG
20152804 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
20152830 GCATGCGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20152856 G
1 G
20152857 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20153354 original size:26 final size:26
Alignment explanation
Indices: 20153304--20153356 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20153294 GTTAGTTTAG
*
20153304 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
20153330 GCATAC-AGAGTTCATTCCCA-ATCTAA
1 GCATACGA-AGTTCATT-CCATATCTAA
20153356 G
1 G
20153357 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:20154511 original size:272 final size:273
Alignment explanation
Indices: 20154010--20154516 Score: 689
Period size: 272 Copynumber: 1.9 Consensus size: 273
20154000 GCCCGAATGT
* *
20154010 TCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAG
1 TCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAATCCCAGTCTAAGATCAAACCAGACCGAAG
* * * * *
20154075 GTTACGGTAGCAGGATCGACAGCACGAAGGGGGGATCGGGCCGGTCCATGACTTGTGCATTCTAC
66 GTTACGGCAGCAGGATCGACAGCACGAAGGGGGGACCGAGCCGGGCCATGACTTATGCATTCTAC
** * * * *
20154140 CTCTCCGGTCGGCTGAGCGCCCAGACGCTCATTTTGGGGGTTGGTTTAGGCATACGGAGTTCATT
131 CTCTCCGACCGACTGAACGCCCAGACGCTCATTTTAGGGGTTGGCTTAGGCATACGGAGTTCATT
* *
20154205 TCATGTCTAAGCATATGGAGTTCCTTCCTAGTCTAAGATCAGACCGGACCAAGGGTAGCGACAGT
196 CCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTAGCGACAGT
20154270 AGAACCAGCATGC
261 AGAACCAGCATGC
* *
20154283 TCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCAATCCCAGTCTAAGATCAAATC-GAACTGA
1 TCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCAATCCCAGTCTAAGATCAAACCAG-ACCGA
* * * * * *
20154346 GGGTTACGGCAGTAGGATCGATAGCATGTA-GGGGGACCGAGCCGGGCCATGGCTTATGCATTCT
64 AGGTTACGGCAGCAGGATCGACAGCACGAAGGGGGGACCGAGCCGGGCCATGACTTATGCATTCT
* * * * * *
20154410 ACCTCTCCGACCGACTGAACG-CCTGCATGCTCGTTTTATGGGTTGGCTTAGGCATATGGAGTTT
129 ACCTCTCCGACCGACTGAACGCCCAG-ACGCTCATTTTAGGGGTTGGCTTAGGCATACGGAGTTC
*
20154474 ATTCCATGTCTAAGCATATGGAGTTCATTCGTAGTCTAAGATC
193 ATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATC
20154517 GAACCTGATC
Statistics
Matches: 201, Mismatches: 30, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
271 3 0.01
272 119 0.59
273 79 0.39
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (273 bp):
TCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAATCCCAGTCTAAGATCAAACCAGACCGAAG
GTTACGGCAGCAGGATCGACAGCACGAAGGGGGGACCGAGCCGGGCCATGACTTATGCATTCTAC
CTCTCCGACCGACTGAACGCCCAGACGCTCATTTTAGGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTAGCGACAGT
AGAACCAGCATGC
Found at i:20154871 original size:26 final size:26
Alignment explanation
Indices: 20154842--20154894 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20154832 GTTGACTTAG
20154842 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
20154868 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20154894 G
1 G
20154895 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20155379 original size:26 final size:26
Alignment explanation
Indices: 20155343--20155394 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20155333 TTAACTTAGA
20155343 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
20155369 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
20155395 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:20155828 original size:695 final size:695
Alignment explanation
Indices: 20154824--20156130 Score: 1697
Period size: 695 Copynumber: 1.9 Consensus size: 695
20154814 CGTATACTCA
* *
20154824 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGAAGGTCATCCCCAATCAAAGCATACAGAGTTCATTCCCAG
* * * * *
20154889 TCTAAGATCAAACCAGATCTAGAGGTGTGGTAGCAGGATCGGTAGCATGCAGGGGGGACCGGGTC
66 TCTAAGATCAAACCAGAGCTAGAGGTGCGGTAGCAGCATCGGCAGCACGCAGGGGGGACCGGGTC
* * * *
20154954 GATCCCCGGCTTGTGCATTCTGCCTCTCCTACCGGTTGATCGCCCGCACACCCGTTTCGTGGGTT
131 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCGCCCGCACACCCGTTTCGTGGGTT
** * *
20155019 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATTGAGGGTTGTGGCAGCAGGA
196 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGCAACAGGA
* * *
20155084 CCGGCAGCACGCAGAGGGGGACCGAACCGATCCTCAGCTTGTGCATTATGCCTCTCCGACCGGCT
261 CCGACAGCACGCAGAGAGGGACCGAACCGATCCTCAGCTTGTGCATTATGCCTCTCCGACCGACT
* * * * * *
20155149 CAGTGCTCGA-ACGTTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGAT
326 CAGCGC-CCACACGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTAATTCCCAGTCTAAGAT
* * * * * * * * * *
20155213 CGGATCGGACCGAGGGTTACGGTAGCAGGATTGACAGCACGCATGGGGGATCAGG-CCAGTCCCC
390 CAGACCGAAACGAAGGTTACGGCAGCAAGATCGACAGCACGCAGGGGGGACCAGGTCCAG-CCCC
* * *
20155277 GGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCACGTTTCGTGGGTTAACTTA-
454 AGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACACACGTTTCGTGGGTTAACTTAT
20155341 GACATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATCG
519 G-CATACGGAGTTCA-CCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCG
* * *
20155404 GACCGAGGGTTGTGGCGGTAGGACCAGCAGCACACAGGAGGGATTGGGTCAATCCCCGCTTGCAT
581 GACCGAGGGTTGCGGCAGAAGGACCAGCAGCACACAGGAGGGATTGGGTCAATCCCCGCTTGCAT
20155469 ATTTTGCCTCTCCGATCGGCTCTCTGACTAGCTGACCGCCCGCACGCTCG
646 ATTTTGCCTCTCCGATCGGCTCTCTGACTAGCTGACCGCCCGCACGCTCG
* * *
20155519 TTTCGTGGGTTGACTTAGGCATACGGAGGTCAT-CCCAAGTCAAAGTATACGGAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGAAGGTCATCCCCAA-TCAAAGCATACAGAGTTCATTCCCA
* * * * *
20155583 GTTTAATATCAGACCAG-GCT-GAGGGTTGCGGTAGTAGCATTGGCAGCACGCAGGGGGGACCGG
65 GTCTAAGATCAAACCAGAGCTAGA-GG-TGCGGTAGCAGCATCGGCAGCACGCAGGGGGGACCGG
* * * *
20155646 G-CTGTTCCCCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGC-CCCTGCACGCCCGTTTTGT
128 GTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCGCCC-GCACACCCGTTTCGT
* **
20155709 GGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGATGTGGCA
191 GGGTT-GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGCA
* * * *
20155774 ACGGGACCGACGGCACGCAG-GAGGGACCTG-GCCGATCCTC-GACTTGCT-CATTATGCCTCTT
255 ACAGGACCGACAGCACGCAGAGAGGGACC-GAACCGATCCTCAG-CTTG-TGCATTATGCCTCTC
* * *
20155835 CGGCCGACTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTAATTCCCAG
317 CGACCGACTCAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTAATTCCCAG
* * * *
20155900 TCTAAGATCAGACCGAAATGAAGGTTACGGCAGTAAGATCGATAGCACGCAGGGGGGACCGGGTC
382 TCTAAGATCAGACCGAAACGAAGGTTACGGCAGCAAGATCGACAGCACGCAGGGGGGACCAGGTC
* * ** *
20155965 GAGCCCCAGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACATTCGTTTCGTGGTTT
447 CAGCCCCAGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACACACGTTTCGTGGGTT
** * *
20156030 GGCTTATGCATACGGAGTTCACTCCATGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCGA
512 AACTTATGCATACGGAGTTCACCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* *
20156095 ATCGGACTGAGGGTTGCGGCAGAAGGACCAGTAGCA
577 ATCGGACCGAGGGTTGCGGCAGAAGGACCAGCAGCA
20156131 GGATCGACAG
Statistics
Matches: 521, Mismatches: 77, Indels: 28
0.83 0.12 0.04
Matches are distributed among these distances:
693 2 0.00
694 20 0.04
695 423 0.81
696 76 0.15
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (695 bp):
TTTCGTGGGTTGACTTAGGCATACGAAGGTCATCCCCAATCAAAGCATACAGAGTTCATTCCCAG
TCTAAGATCAAACCAGAGCTAGAGGTGCGGTAGCAGCATCGGCAGCACGCAGGGGGGACCGGGTC
GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCGCCCGCACACCCGTTTCGTGGGTT
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGCAACAGGA
CCGACAGCACGCAGAGAGGGACCGAACCGATCCTCAGCTTGTGCATTATGCCTCTCCGACCGACT
CAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTAATTCCCAGTCTAAGATC
AGACCGAAACGAAGGTTACGGCAGCAAGATCGACAGCACGCAGGGGGGACCAGGTCCAGCCCCAG
CTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACACACGTTTCGTGGGTTAACTTATGC
ATACGGAGTTCACCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCG
AGGGTTGCGGCAGAAGGACCAGCAGCACACAGGAGGGATTGGGTCAATCCCCGCTTGCATATTTT
GCCTCTCCGATCGGCTCTCTGACTAGCTGACCGCCCGCACGCTCG
Found at i:20156074 original size:26 final size:26
Alignment explanation
Indices: 20156037--20156089 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20156027 TTTGGCTTAT
20156037 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
* *
20156063 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
20156089 G
1 G
20156090 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:20156637 original size:355 final size:363
Alignment explanation
Indices: 20155936--20156638 Score: 849
Period size: 367 Copynumber: 2.0 Consensus size: 363
20155926 ACGGCAGTAA
* * * *
20155936 GATCGATAGCACGCAGGGGGGACCGGGTCGAGCCCCAGCTTGCGCATTCTGCCTCTCTGACCGGC
1 GATCGATAGCACGCAGGGGGGACCGGGTCGAACCCCAGCTTACACATTCTGCCTATCTGACCGGC
* * * * *
20156001 TGAGCGCCCGCACATTCGTTTCGTGGTTTGGCTTATGCATACGGAGTTCACTCCATGTCTAAGCA
66 TGAACGCCCGCACACTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCACCCCATGTCTAAGCA
* * * *
20156066 TACGTAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGGCAGAAGGACCAGTAGCA
131 TACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGAAGGACCAG-AGCA
* * *
20156131 GGATCGACAGCACGTAGGGGGGATCGGACTGATCCCTGGCTTCCGTATTCTACCTCTCCGGCTGG
195 GGATC-ACAGCACGTA-GGGGGATCGGACTAATCCCTGGCTTCCGCATTCTACCTCTCCAGCTGG
*
20156196 CTGAGCACCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
258 CTAAGCACCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* *
20156261 CCCAGCCGGACTGAGGGTTGTGGTAGCAGGAACGGCAGCGG
323 CCCAGCCGAACCGAGGGTTGTGGTAGCAGGAACGGCAGCGG
* * *
20156302 GATCGGTAGCACGCAGAGGGGGACCGGG-CTGAACCCC-GACTTACACATTCTGCCTATTTGGCC
1 GATCGATAGCACGCAG-GGGGGACCGGGTC-GAACCCCAG-CTTACACATTCTGCCTATCTGACC
* * *
20156365 GGCTGAATGCCCGCACGCTCGTTTCATTGG-TTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
63 GGCTGAACGCCCGCACACTCGTTTC-GTGGTTTGACTTAGGCATACGGAGTTCA-CCCCATGTCT
** * * *
20156428 AAGCATACGAAGTTCATTCCCCTTCTAAGATTGAACCAGACCGAGGGTTGCGGCAGCAGGATC-G
126 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGAAGGACCAG
* * * * *
20156492 -GTA-G-T-ACAG-A-G-A-GGGGATCGGGCTAATCCCTGGCTTGCGCATTCTGCCTCTCCA-AT
191 AGCAGGATCACAGCACGTAGGGGGATCGGACTAATCCCTGGCTTCCGCATTCTACCTCTCCAGCT
* * * * *
20156548 CGGCTAAGCACCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTA
256 -GGCTAAGCACCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
20156613 AGCCCCAGTCGAACCGATGGTTGTGG
320 AGCCCCAGCCGAACCGAGGGTTGTGG
20156639 CAGCGAAATC
Statistics
Matches: 289, Mismatches: 42, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
354 1 0.00
355 116 0.40
357 1 0.00
358 1 0.00
359 1 0.00
360 4 0.01
362 1 0.00
363 1 0.00
364 2 0.01
366 18 0.06
367 136 0.47
368 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (363 bp):
GATCGATAGCACGCAGGGGGGACCGGGTCGAACCCCAGCTTACACATTCTGCCTATCTGACCGGC
TGAACGCCCGCACACTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCACCCCATGTCTAAGCA
TACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGAAGGACCAGAGCAG
GATCACAGCACGTAGGGGGATCGGACTAATCCCTGGCTTCCGCATTCTACCTCTCCAGCTGGCTA
AGCACCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGCCGAACCGAGGGTTGTGGTAGCAGGAACGGCAGCGG
Found at i:20157232 original size:511 final size:511
Alignment explanation
Indices: 20156568--20157529 Score: 1200
Period size: 511 Copynumber: 1.9 Consensus size: 511
20156558 CCCGCACGTT
* *
20156568 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGTCGAACCGATGG
1 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGG
* * * * *
20156633 TTGTGGCAGCGAAATCGACAGCACGTAGAGGGGGACTGGGCCGATCCTGGCTTGCGCATTAGCCC
66 TTGTGGCAGCGAAACCGACAGCACGCAGAAGGGGACTGGGCCGATCCTAGCTTGCACATTAGCCC
* * * * * **
20156698 TCTCCGACCGGCTCAGTGCCCGAATGCTCATTTCGTGCATTGC-CTTAGGCATACGGAGTTTGTT
131 TCTCCGACCAGCTCAGCGCCCGAACGCTCATTCCATGCATT-CACTTAGGCATACGGAGTTCATT
* * * *
20156762 CCCAGTCTAAGATTAGACCAAACCGAGGGTTACGACAGCCGGATCGATAGCACGCATGGGGGA-T
195 CCCAGTCTAAGATCAGACCAAACCGAAGGTTACGACAGCCGGATCGACAGCACGCAGGGGGGACT
* * * * *
20156826 CAGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCTGACCGTTTGAGTGCCCGCACACTCGTTTCG
260 -AGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACACTCGTTTCG
* * * * * *
20156891 TGGGTTGGCTTAGGCATACGGAGTTAAATCCATGTCTAAGCATATGTAGTTCCTTCCCAGTCTAA
324 TGGGTTGGCTTAGGCATACAGAGTTAAATCCATCTCTAAGCATACGAAGTTCATTCCCAGTCGAA
* *
20156956 GATCAGA-CTGAACCGAGGGTTGC-GACAATAGGACCAGTAACAAGATCGACAGCACGCAGGGGG
389 GATCAGATCAG-ACCGAGGGTTGCAG-CAACAGGACCAGTAACAAGATCGACAGCACGCAGGGGG
20157019 ACGGGGCTGATCCCCGGCTTGTGCATTCTGTCTCTTCGACCGACTGAGTGCCTACACACC
452 ACGGGGCTGATCCCCGGCTTGTGCATTCTGTCTCTTCGACCGACTGAGTGCCTACACACC
* * * *
20157079 CGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGTCCCAGTCGGATCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGG
* **
20157144 TTGTGGCAGTGGGACCGACAGCACGCAGAAGGGGACCT-GGCC-ATCCCTAGCTTGCACATTATG
66 TTGTGGCAGCGAAACCGACAGCACGCAGAAGGGGA-CTGGGCCGAT-CCTAGCTTGCACATTA-G
* ** * **
20157207 -CCTCTCTGGTCAGCTCAGCGCCCGAACGCTCGTTCCATGGGTTCACTTAGGCATACGGAGTTCA
128 CCCTCTCCGACCAGCTCAGCGCCCGAACGCTCATTCCATGCATTCACTTAGGCATACGGAGTTCA
* * * * ** * * *
20157271 TTCCTAGTTTAAGATCAGATCGAACCGAAGGTTGTGGCAGCGGGATTGACAGCACGCAGGGGGGA
193 TTCCCAGTCTAAGATCAGACCAAACCGAAGGTTACGACAGCCGGATCGACAGCACGCAGGGGGGA
* * * * *
20157336 CTGGGTTGATCCCCGACTTGTGCATTCTACCTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTC
258 CTAGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACACTCGTTTC
* * * * *
20157401 GTGGGTTGGCTTAGGCATTCAGAGTTCATTCCATCTCTAAGCATGCGAAGTTCATTCCTAGTCGA
323 GTGGGTTGGCTTAGGCATACAGAGTTAAATCCATCTCTAAGCATACGAAGTTCATTCCCAGTCGA
* * * * *
20157466 AGATCGGATCAGACCGAGGGTTGCAGCAGCAGGACCAGTAACAGGATCGATAGCACGTAGGGGG
388 AGATCAGATCAGACCGAGGGTTGCAGCAACAGGACCAGTAACAAGATCGACAGCACGCAGGGGG
20157530 GACCAGATCG
Statistics
Matches: 376, Mismatches: 68, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
510 3 0.01
511 366 0.97
512 7 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (511 bp):
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGG
TTGTGGCAGCGAAACCGACAGCACGCAGAAGGGGACTGGGCCGATCCTAGCTTGCACATTAGCCC
TCTCCGACCAGCTCAGCGCCCGAACGCTCATTCCATGCATTCACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAAACCGAAGGTTACGACAGCCGGATCGACAGCACGCAGGGGGGACTA
GGTCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACACTCGTTTCGTG
GGTTGGCTTAGGCATACAGAGTTAAATCCATCTCTAAGCATACGAAGTTCATTCCCAGTCGAAGA
TCAGATCAGACCGAGGGTTGCAGCAACAGGACCAGTAACAAGATCGACAGCACGCAGGGGGACGG
GGCTGATCCCCGGCTTGTGCATTCTGTCTCTTCGACCGACTGAGTGCCTACACACC
Found at i:20157660 original size:26 final size:26
Alignment explanation
Indices: 20157624--20157676 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20157614 GTTCACTTAG
20157624 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
20157650 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20157676 G
1 G
20157677 AACAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20158861 original size:159 final size:159
Alignment explanation
Indices: 20158684--20159205 Score: 503
Period size: 159 Copynumber: 3.3 Consensus size: 159
20158674 CCCACATGCC
* ** * ** *
20158684 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGG
1 CATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAAGG
* * * * *
20158749 TTGTGGCAGCAGGA-CTGGCAGCACGCAGAGGGGGACCGAGTAGATCCCCGGCTTACGCATTCTG
66 TTGTGGCAGCAGGATC-GACAGCACACAGAGGGGGACCGAGCAGATCCCCGGCTTACACATTATG
* * *
20158813 CCTCTCCCACTGGTTGAGCGCCCGTACACT
130 CCTCTCCCACTGGCTCAGCGCCCGCACACT
20158843 CATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAAGG
1 CATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAAGG
* * *
20158908 TTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGC
66 TTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCGAGCAGATCCCCGGCTTACACATTATGC
* ****
20158973 CTTTCTGGTTGGCTCAGCGCCCGCACACT
131 CTCTCCCACTGGCTCAGCGCCCGCACACT
* ** * * * *
20159002 CATTTCATTGGTTAGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGG
1 CATTTCATGGGTTAGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCAAAG
** * * ** * * * * * *
20159066 GTTACGGTAGCAAGATCGACAGCATGCAG-GGGGGACC-AGACCGGTCCCTGACTTACGCATTCT
65 GTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCGAG-CAGATCCCCGGCTTACACATTAT
* ** * * * *
20159129 ACCTCTCCGGCCGGCTGAGCGCCCACACGCT
129 GCCTCTCCCACTGGCTCAGCGCCCGCACACT
* * * * *
20159160 CGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGCCTAA
1 CATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAA
20159206 ACATACGGAG
Statistics
Matches: 302, Mismatches: 57, Indels: 9
0.82 0.15 0.02
Matches are distributed among these distances:
157 4 0.01
158 84 0.28
159 210 0.70
160 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (159 bp):
CATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAAGG
TTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCGAGCAGATCCCCGGCTTACACATTATGC
CTCTCCCACTGGCTCAGCGCCCGCACACT
Found at i:20159486 original size:513 final size:513
Alignment explanation
Indices: 20158791--20159949 Score: 1533
Period size: 513 Copynumber: 2.3 Consensus size: 513
20158781 GGACCGAGTA
* * * * *
20158791 GATCCCCGGCTTACGCATTCTGCCTCTCCCACTGGTTGAGCGCCCGTACACTCATTTCATGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTTCCACTGGTTGAGAGCCCGTACGCTCATTTCATGGGTT
* * * * * *
20158856 AGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAAGGTTGTGGCAGCAGG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTTGTGGCAGTAGG
* * * * *
20158921 ATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTTTCTGGTTGGC
131 A-CGACAGCACACAGAGGGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCTCTCCGGCTGGC
* *
20158986 TCAGCGCCCGCACACTCATTTCATTGGTT-AGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
195 TCAGCGCCCGCACACTCATTTCATGGGTTGA-CTTAGGCATACAGAGTTCATTCACAGTCTAAGA
* *
20159050 TCAAACCAGACCGAGGGTTACGGTAGCAAGATCGACAGCATGCA-GGGGGGACC-AGACCGGTCC
259 TCAAACCAGACCGAGGGTTACGGTAGCAAGATCGACAGCACGCAGGGGGGGACCGAG-CCGATCC
* * *
20159113 CTGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTT
323 CCGACTCACGCATTCTACCTCTCCGACCGGCTGAGCG-CCACACGCTCGTTTCGTGGGTTGGCTT
20159178 AGGCATACAAAGTTCATTCCATGCCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTG
387 AGGCATACAAAGTTCATTCCATGCCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGATC-G
* * * ** **
20159242 GACTGAGGGTTGCAGTAGCAGGACCAACAATAGGAT-TAGCAGTACGTAAGGGGGG-TCGGGCC
451 GACCGAGGGTTGCAGTAGCAGGACCAACAACAAGATCT-GCAACACACAAGGGGGGATCGGGCC
* * * * * *
20159304 GATCCCTGGCTTGCGCATTCTGCCTCTTCGATTGGTCGAGTGCCCGTATGCCCATTTCATGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTTCCACTGGTTGAGAGCCCGTACGCTCATTTCATGGGTT
* * * *
20159369 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCATAGCCAGACCAAGGGTTGTGGCAGTGGG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTTGTGGCAGTAGG
* * * *
20159434 ACAGATAGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGC
131 AC-GACAGCACACAGAGGGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCTCTCCGGCTGGC
* * * * *
20159499 TCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAGAT
195 TCAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACAGTCTAAGAT
** * *
20159564 CGGACCAGACCGAGGGTTACGGTAGCAAGATCGACAGCACGTAGGGGGGGATCGAGCCGATCCCC
260 CAAACCAGACCGAGGGTTACGGTAGCAAGATCGACAGCACGCAGGGGGGGACCGAGCCGATCCCC
* * * *
20159629 GACTCACGCATTCTGCCTCTTCGATCGGCTGAGCGCGACACGCTCGTTTCGTGGGTTGGCTTAGG
325 GACTCACGCATTCTACCTCTCCGACCGGCTGAGCGCCACACGCTCGTTTCGTGGGTTGGCTTAGG
* * * *
20159694 CATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACC
390 CATACAAAGTTCATTCCATGCCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
* *
20159759 GAGGGTTGCGGTAGCAGGACCAATAACAAGATCTGCAACACACAAGGGGGGATCGGGCC
455 GAGGGTTGCAGTAGCAGGACCAACAACAAGATCTGCAACACACAAGGGGGGATCGGGCC
* * * * * *
20159818 GGT-CCTCGGCTTGCACATTCTACCTC-TCCAGCCGGTTGAGAGCCCGCACGCTCGTTTCATGGG
1 GATCCCT-GGCTTGCGCATTCTGCCTCTTCCA-CTGGTTGAGAGCCCGTACGCTCATTTCATGGG
* * *
20159881 TTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGTA
64 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTTGTGGCAGTA
20159946 GGAC
129 GGAC
20159950 TAGCAACGGG
Statistics
Matches: 556, Mismatches: 81, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
512 1 0.00
513 393 0.71
514 160 0.29
515 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (513 bp):
GATCCCTGGCTTGCGCATTCTGCCTCTTCCACTGGTTGAGAGCCCGTACGCTCATTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTTGTGGCAGTAGG
ACGACAGCACACAGAGGGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCTCTCCGGCTGGCT
CAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACAGTCTAAGATC
AAACCAGACCGAGGGTTACGGTAGCAAGATCGACAGCACGCAGGGGGGGACCGAGCCGATCCCCG
ACTCACGCATTCTACCTCTCCGACCGGCTGAGCGCCACACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACAAAGTTCATTCCATGCCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG
AGGGTTGCAGTAGCAGGACCAACAACAAGATCTGCAACACACAAGGGGGGATCGGGCC
Found at i:20159580 original size:159 final size:157
Alignment explanation
Indices: 20159290--20159723 Score: 434
Period size: 159 Copynumber: 2.7 Consensus size: 157
20159280 GCAGTACGTA
* * * *
20159290 AGGGGGGTCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTC-GATTGG-TCGAGTGCCCGTAT
1 AGGGGGATCGGGCCGATCCC-CGCTTGCGCATTCTGCCTCTTCGGA-TGGCTC-AGTGCCCGCAC
* * *
20159353 GCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCATAGCCAGACCAA
63 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CATAGCCAGACCAA
** *** *
20159418 GGGTTGTGGCAGTGGGA-CAGATAGCACGCAG
127 GGGTTACGGCAGCAAGATC-GACAGCACGCAG
* * * *
20159449 AGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGTGCCCGCACGC
1 AGGGGGATCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTTCGGATGGCTCAGTGCCCGCACGC
* * *
20159514 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CATAGTCTAAG-ATCGGACCAGACCGA
65 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCAT-AG-CCAGACCAA
* *
20159577 GGGTTACGGTAGCAAGATCGACAGCACGTAG
127 GGGTTACGGCAGCAAGATCGACAGCACGCAG
* * ** * *
20159608 GGGGGGATCGAGCCGATCCCCGACTCACGCATTCTGCCTCTTC-GATCGGCT--GAGCGCGACAC
1 AGGGGGATCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTTCGGAT-GGCTCAGTGCCCG-CAC
* *
20159670 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATA
63 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
20159724 CGGAGTTCAT
Statistics
Matches: 227, Mismatches: 36, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
157 7 0.03
158 53 0.23
159 163 0.72
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
AGGGGGATCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTTCGGATGGCTCAGTGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAGCCAGACCAAGGGT
TACGGCAGCAAGATCGACAGCACGCAG
Found at i:20159730 original size:26 final size:26
Alignment explanation
Indices: 20159693--20159745 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20159683 GTTGGCTTAG
20159693 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
20159719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20159745 G
1 G
20159746 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20160473 original size:157 final size:159
Alignment explanation
Indices: 20160239--20160600 Score: 392
Period size: 157 Copynumber: 2.3 Consensus size: 159
20160229 TGCACACCCG
* *
20160239 TTTCGTGGGTTGGCTTAGGCATAGGGATTTCAGTCCACATCTAAGCCCCAGCCAGACTGAGGGCT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACATCTAAGCCCCAGCCAGACTGAGGGCT
* * * * * * *
20160304 GTGGCAGCGGGATCGATAGCACGCAG-GGGGGACCGGGCTGATCCCCGG-TTGCCCTTTCTGCCT
66 CTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCACGGCTTGCCCATTATGCCT
**
20160367 CTCCGGCCAGCTAAGTGCCCGCACGC-CTA
131 CTCCGGCCAGCTAAGCACCCGCACGCTC-A
** * * *
20160396 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTTAGCCCCAGCCGGACCT-AGGGT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACATCTAAGCCCCAGCCAGA-CTGAGGGC
* * * * *
20160460 TCTGGTAGTGGGATCGACAGCATGTAGAGGGGGACCAGGCCGATCCACGGCTTGCGCATTATGCC
65 TCTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCACGGCTTGCCCATTATGCC
* * * * *
20160525 TCTTCGGTCGGCTCAGCACCCGCACGCTCG
130 TCTCCGGCCAGCTAAGCACCCGCACGCTCA
* * * *
20160555 TTTCGTGTGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACA-TCTAAGC
20160601 ATACGGAGTT
Statistics
Matches: 167, Mismatches: 33, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 75 0.45
158 24 0.14
159 67 0.40
160 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACATCTAAGCCCCAGCCAGACTGAGGGCT
CTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCACGGCTTGCCCATTATGCCT
CTCCGGCCAGCTAAGCACCCGCACGCTCA
Found at i:20160609 original size:26 final size:26
Alignment explanation
Indices: 20160573--20160625 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20160563 GTTGACTTAG
*
20160573 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
20160599 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
20160625 G
1 G
20160626 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:20160746 original size:185 final size:185
Alignment explanation
Indices: 20160447--20160812 Score: 466
Period size: 185 Copynumber: 2.0 Consensus size: 185
20160437 TTAGCCCCAG
* * * * *
20160447 CCGGACCTAGGGTTCTGGTAGTGGGATCGACAGCATGTAGAGGGGGACCAGGCCGATCCACGGCT
1 CCGGACCGAGGGTTCTGGCAGTAGGATCGACAGCACGTAGAGGGGGACCAGGCCGATCCACAGCT
* ** * *
20160512 TGCGCATTATGCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCAT
66 TGCGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
20160577 ACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGA
131 ACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGA
* * * * * *
20160632 CCGGACCGAGGGTTGC-GGCAGTAGGATCGACAGTACGTGGGGGGGGACCGGGCTGATCCCCAGC
1 CCGGACCGAGGGTT-CTGGCAGTAGGATCGACAGCACGTAGAGGGGGACCAGGCCGATCCACAGC
* * * * * * * *
20160696 TTGTGCATTCTGCCTCTCCGACCGGTTGAGCTCCTGCACGTTCATTTCGTGGGTTGGCTTAGGCA
65 TTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* *
20160761 TACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
130 TACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGAT
20160813 TTTGAGCCAT
Statistics
Matches: 153, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 3 0.02
185 149 0.97
186 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (185 bp):
CCGGACCGAGGGTTCTGGCAGTAGGATCGACAGCACGTAGAGGGGGACCAGGCCGATCCACAGCT
TGCGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGA
Found at i:20160794 original size:26 final size:26
Alignment explanation
Indices: 20160758--20160810 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20160748 GTTGGCTTAG
20160758 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20160784 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20160810 G
1 G
20160811 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20161512 original size:26 final size:26
Alignment explanation
Indices: 20161482--20161533 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
20161472 TTGACTTAGT
20161482 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
20161508 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
20161534 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:20161799 original size:159 final size:158
Alignment explanation
Indices: 20161547--20162009 Score: 534
Period size: 159 Copynumber: 2.9 Consensus size: 158
20161537 GGACCGGATT
* * * * * * *
20161547 GAGGGTTACGGTAGCAGGATCGATAGCACGTAGGGGGGACCGGGCCTATCCCCGGCTTGCGCATT
1 GAGGGTTGCGGCAGCAAGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * *
20161612 CTGCCTCTCCGGCCGGCTGAGTGACCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCCGGCTGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTT
20161677 CATTCCATGTCTAAGCCCCAACCGGACC
131 CATTCCATGTCTAAGCCCCAACCGGACC
* * *
20161705 GAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAAGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * *
20161770 TATGCCTCTCCGGCTGGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAAGGAGT
65 TCTGCCTCTCCGGCTGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGT
* ** **
20161835 TCATTTCCA-ATCTAAGATCGGACCGGACC
130 TCA-TTCCATGTCTAAGCCCCAACCGGACC
* * * * * ** *
20161864 GAGGGTTGCGGTAGCAAGATCGACAGCATGCAGGGGGGACCGGGTCGGTCCCCAACTTACGCATT
1 GAGGGTTGCGGCAGCAAGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * * * *
20161929 CTGCCTCTCCGGTTGGCTGAGTGCCAGCACGCTCATGTCGTGTGTTGGCTAAGGCATACA-GAGT
66 CTGCCTCTCCGGCTGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGT
20161993 TCATTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
20162010 ATACGAAGTT
Statistics
Matches: 255, Mismatches: 46, Indels: 8
0.83 0.15 0.03
Matches are distributed among these distances:
157 5 0.02
158 113 0.44
159 132 0.52
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAAGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
CTGCCTCTCCGGCTGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTT
CATTCCATGTCTAAGCCCCAACCGGACC
Found at i:20161984 original size:158 final size:157
Alignment explanation
Indices: 20161503--20162008 Score: 561
Period size: 158 Copynumber: 3.2 Consensus size: 157
20161493 CATCCCCAGT
* ** ** *
20161503 CTAA-GCATACGGAGTTCATCCCCAGTCTAAGATCGGACCGGATTGAGGGTTACGGTAGCAGGAT
1 CTAAGGCATAAGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGAT
* * * *
20161567 CGATAGCACGTAGGGGGGACCGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGA
66 CGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGA
* *
20161632 GTGACCGCACACCCGTTTTGTGGGTTGG
131 GTG-CCGCACACTCGTTTCGTGGGTTGG
* * ** ** * *
20161660 CTTAGGCATAGGGAGTTCA-TTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGA
1 CTAAGGCATAAGGAGTTCATTTCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGA
* * *
20161724 CCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCT
65 TCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCT
* * *
20161789 CAGTGCCCGCACACTCGTTTCATGGGTTGA
129 GAGTG-CCGCACACTCGTTTCGTGGGTTGG
* * *
20161819 CTTAGGCATAAGGAGTTCATTTCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGAT
1 CTAAGGCATAAGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGAT
* * * ** * *
20161884 CGACAGCATGCAGGGGGGACCGGGTCGGTCCCCAACTTACGCATTCTGCCTCTCCGGTTGGCTGA
66 CGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGA
* * * *
20161949 GTGCCAGCACGCTCATGTCGTGTGTTGG
131 GTGCC-GCACACTCGTTTCGTGGGTTGG
20161977 CTAAGGCATACA-GAGTTCA-TTCCATGTCTAAG
1 CTAAGGCATA-AGGAGTTCATTTCCA-GTCTAAG
20162009 CATACGAAGT
Statistics
Matches: 288, Mismatches: 54, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
157 13 0.05
158 138 0.48
159 132 0.46
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
CTAAGGCATAAGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGAT
CGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGA
GTGCCGCACACTCGTTTCGTGGGTTGG
Found at i:20162214 original size:26 final size:26
Alignment explanation
Indices: 20162176--20162230 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
20162166 GGGTTGGCTC
*
20162176 AAGCATACGGAGTTCATCCCCAGTCT
1 AAGCATACAGAGTTCATCCCCAGTCT
*
20162202 AAGCATACAGAGTTCATTCCCAGTCT
1 AAGCATACAGAGTTCATCCCCAGTCT
20162228 AAG
1 AAG
20162231 ATCAAACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (26 bp):
AAGCATACAGAGTTCATCCCCAGTCT
Found at i:20162231 original size:196 final size:196
Alignment explanation
Indices: 20161888--20162259 Score: 491
Period size: 196 Copynumber: 1.9 Consensus size: 196
20161878 CAAGATCGAC
* * * * * *
20161888 AGCATGCAGGGGGGACCGGGTCGGTCCCCAACTTACGCATTCTGCCTCTCCGGTTGGCTGAGTGC
1 AGCACGCAGGGGGGACCGAGTCGATCCCCAACTTACGCAATCTGCCTCTCCAGTTGGCTGAGCGC
* *
20161953 CAGCACGCTCATGTCGTGTGTTGGCTAAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAG
66 CAGCACGCTCATGTCGTGGGTTGGCTAAGGCATACAGAGTTCATCCCATGTCTAAGCATACGAAG
* * *
20162018 TTAATTCCCGATCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAATACCAACAGCAGGATCGG
131 TTAATTCCCGATCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAATACCAACAGCAGGATCGG
20162083 T
196 T
* * *
20162084 AGCACGCAGGGGGGACTGAGTCGATCCCCGACTTGCGCAATCTGCCTCTCCAGTTGGCTGAGCGC
1 AGCACGCAGGGGGGACCGAGTCGATCCCCAACTTACGCAATCTGCCTCTCCAGTTGGCTGAGCGC
* ** * *
20162149 CTGCACGCTGGTTTCGTGGGTTGGCTCAA-GCATACGGAGTTCATCCCCA-GTCTAAGCATAC-A
66 CAGCACGCTCATGTCGTGGGTTGGCT-AAGGCATACAGAGTTCAT-CCCATGTCTAAGCATACGA
* *
20162211 GAGTTCATTCCC-AGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCA
129 -AGTTAATTCCCGA-TCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCA
20162260 GGATCGATAG
Statistics
Matches: 151, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
195 2 0.01
196 144 0.95
197 5 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (196 bp):
AGCACGCAGGGGGGACCGAGTCGATCCCCAACTTACGCAATCTGCCTCTCCAGTTGGCTGAGCGC
CAGCACGCTCATGTCGTGGGTTGGCTAAGGCATACAGAGTTCATCCCATGTCTAAGCATACGAAG
TTAATTCCCGATCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAATACCAACAGCAGGATCGG
T
Found at i:20163450 original size:26 final size:26
Alignment explanation
Indices: 20163414--20163464 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20163404 TGACTTAGGA
*
20163414 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAAAGTTCATCCCCAGTCTAAGC
*
20163440 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATCCCCAGTCTAAG
20163465 ATTAGCCCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.25
Consensus pattern (26 bp):
ATACAAAGTTCATCCCCAGTCTAAGC
Found at i:20163675 original size:158 final size:158
Alignment explanation
Indices: 20163479--20163939 Score: 489
Period size: 159 Copynumber: 2.9 Consensus size: 158
20163469 GCCCAGACCA
** * *
20163479 AGGGTTGCCATAGCACGATCGGCAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTC
1 AGGGTTGCGGTAGCAAGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTC
* *
20163544 TGCCTCTCCGACCGACTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * *
20163609 ATTCCATGTCTAAGACCAGTC-GGACTG
131 ATTCCATGTCTAAGACCAGACTGAACCG
* ** *
20163636 AGGGTTGTGGTAGCGGGATCGACAGCACGTAGAGGGGGACCGGG-TCGATCCCCGGTTTGCGCAT
1 AGGGTTGCGGTAGCAAGATCGACAGCACGTAG-GGGGGACCGGGCT-GATCCCCGGCTTGCGCAT
* * * * * * ** *
20163700 TATGCCTCTCCAACCGACTTAGCACCCGTACGCTCATTTCACGGGTTGAG-TTAGGCATACAAAC
64 TCTGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTG-GCTTAGGCATACGGAG
**
20163764 TTCATTCCCAT-TCTAAGATTAGACTGAACCG
128 TTCATT-CCATGTCTAAGACCAGACTGAACCG
* * * * * * * **
20163795 AGGGTTGCGTTAGCAAGATGGATAGCACGCAGGGGGGGATCGGGCTGGTCCCCGACTTATGCATT
1 AGGGTTGCGGTAGCAAGATCGACAGCACGTA-GGGGGGACCGGGCTGATCCCCGGCTTGCGCATT
* * * * * *
20163860 CTGCCTCTCCGGCCGGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
65 CTGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
*
20163925 CATTCAATGTCTAAG
130 CATTCCATGTCTAAG
20163940 CATACGGAGT
Statistics
Matches: 243, Mismatches: 52, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 27 0.11
158 99 0.41
159 115 0.47
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
AGGGTTGCGGTAGCAAGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTC
TGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGACCAGACTGAACCG
Found at i:20163905 original size:159 final size:157
Alignment explanation
Indices: 20163438--20163929 Score: 474
Period size: 158 Copynumber: 3.1 Consensus size: 157
20163428 CCCAGTCTAA
* * * * *
20163438 GCATACAAAGTTCATTCCCAGTCTAAGATTAGCCCAGACCAAGGGTTGCCATAGCACGATCGG-C
1 GCATACAAAGTTCATTCCCATTCTAAGATTAG-CGA-ACCGAGGGTTGCGATAGCAAGAT-GGAC
*
20163502 AGCACGTA-GGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCG
63 AGCACGTAGGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGAG
*
20163566 CCCGTACGCCCGTTTCATGGGTTGGCTTAG
128 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
*** ** * * * * ** *
20163596 GCATAGGGAGTTCATT-CCATGTCTAAGACCAGTCGGACTGAGGGTTGTGGTAGCGGGATCGACA
1 GCATACAAAGTTCATTCCCAT-TCTAAGATTAG-CGAACCGAGGGTTGCGATAGCAAGATGGACA
* * * * *
20163660 GCACGTAGAGGGGGACCGGG-TCGATCCCCGGTTTGCGCATTATGCCTCTCCAACCGACTTAGCA
64 GCACGTAGGGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAG-A
* *
20163724 -CCCGTACGCTCATTTCACGGGTTGAG-TTAG
127 GCCCGTACGCTCGTTTCATGGGTTG-GCTTAG
* * *
20163754 GCATACAAACTTCATTCCCATTCTAAGATTAGACTGAACCGAGGGTTGCGTTAGCAAGATGGATA
1 GCATACAAAGTTCATTCCCATTCTAAGATTAG-C-GAACCGAGGGTTGCGATAGCAAGATGGACA
* * * * ** * *
20163819 GCACGCAGGGGGGGATCGGGCTGGTCCCCGACTTATGCATTCTGCCTCTCCGGCCGGCTGAGAGC
64 GCACGTAGGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGAGC
* * *
20163884 CCGCACACTCGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTCATGGGTTGGCTTAG
**
20163913 GCATACGGAGTTCATTC
1 GCATACAAAGTTCATTC
20163930 AATGTCTAAG
Statistics
Matches: 261, Mismatches: 62, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 29 0.11
158 119 0.46
159 111 0.43
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACAAAGTTCATTCCCATTCTAAGATTAGCGAACCGAGGGTTGCGATAGCAAGATGGACAGC
ACGTAGGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGAGCCC
GTACGCTCGTTTCATGGGTTGGCTTAG
Found at i:20163949 original size:26 final size:26
Alignment explanation
Indices: 20163913--20163965 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20163903 GTTGGCTTAG
20163913 GCATACGGAGTTCA-TTCAATGTCTAA
1 GCATACGGAGTTCATTTCAA-GTCTAA
20163939 GCATACGGAGTTCATTTCAAGTCTAA
1 GCATACGGAGTTCATTTCAAGTCTAA
20163965 G
1 G
20163966 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCAAGTCTAA
Found at i:20164295 original size:356 final size:345
Alignment explanation
Indices: 20163873--20164506 Score: 819
Period size: 356 Copynumber: 1.8 Consensus size: 345
20163863 CCTCTCCGGC
* *
20163873 CGGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTA
1 CGGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCAATGTCTA
*
20163938 AGCATACGGAGTTCATTTCAAGTCTAAGATC-GAACCAGACCGAAGGTTGCTGCAGTAGGACCAG
66 AGCATACGGAGTTCATTTCAAGTCTAAGACCAG-ACCAGACCG-AGG--GCTGCAGTA-G--CAG
* * * * ** *
20164002 CAGCAGGATCTGTAACACGTAGGGGGGA-CTGGGTCGATCCCTAGCTTGTGCATTCTGCCTCTCC
124 CAGC--GA-C---AACACGCAGGAGGGATC-GAGTCGATCCCCAGCTTGCACAATCTGCCTCTCC
* *
20164066 GGCT-GGCTGAGCACCCGCACG-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
182 -GATAGGCTGAGCACCCGCACGCCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
*
20164129 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCACGAAGAGGGGGATCGAGCTGATCCCCAGC
246 GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCACGAAGAGGGGGATCGAGCTGATCCCCAGC
20164194 TTGCGTATTATGCCTCTCCGACTAGCCTCTACGAT
311 TTGCGTATTATGCCTCTCCGACTAGCCTCTACGAT
* * *
20164229 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
1 CGGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCAATGTCT
* * * * * * * *
20164293 AAGCATATGGAGTTCATTTCCAGTCTAAGACCAGATCGGATCGAGGGTTGCAGTAGCAGGATCGA
65 AAGCATACGGAGTTCATTTCAAGTCTAAGACCAGACCAGACCGAGGGCTGCAGTAGCAGCAGCGA
* * * *
20164358 CAGCATGCAGGAGGGATCGAGTCGATCCCCGGCTTGCACAATCTGCCTCTCCGATAGGCTGAGCG
130 CAACACGCAGGAGGGATCGAGTCGATCCCCAGCTTGCACAATCTGCCTCTCCGATAGGCTGAGCA
*
20164423 CCCGCACGCCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
195 CCCGCACGCCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
*
20164488 CAGACTGAGGGTTGTGGCA
260 CAGACCGAGGGTTGTGGCA
20164507 ACTGGGTCGA
Statistics
Matches: 243, Mismatches: 30, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
343 2 0.01
344 55 0.23
345 72 0.30
347 1 0.00
348 2 0.01
350 5 0.02
352 1 0.00
353 8 0.03
355 3 0.01
356 91 0.37
357 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (345 bp):
CGGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCAATGTCTA
AGCATACGGAGTTCATTTCAAGTCTAAGACCAGACCAGACCGAGGGCTGCAGTAGCAGCAGCGAC
AACACGCAGGAGGGATCGAGTCGATCCCCAGCTTGCACAATCTGCCTCTCCGATAGGCTGAGCAC
CCGCACGCCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
AGACCGAGGGTTGTGGCAGCACGAAGAGGGGGATCGAGCTGATCCCCAGCTTGCGTATTATGCCT
CTCCGACTAGCCTCTACGAT
Found at i:20164305 original size:26 final size:26
Alignment explanation
Indices: 20164269--20164321 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20164259 GTTGACTTAG
20164269 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
20164295 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20164321 G
1 G
20164322 ACCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.