Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 188 of 402
Found at i:20164775 original size:158 final size:157
Alignment explanation
Indices: 20164292--20164797 Score: 540
Period size: 159 Copynumber: 3.2 Consensus size: 157
20164282 ATCCCCAGTC
* *
20164292 TAAGCATATGGAGTTCATTTCCA-GTCTAAGACCAGATCGGATCGAGGGTTGCAGTAGCAGGATC
1 TAAGCATACGAAGTTCA-TTCCATGTCTAAGACCAGATCGGATCGAGGGTTGCAGTAGCAGGATC
* * * * * * *
20164356 GACAGCATGCAGGAGGGATCGAGTCGATCCCCGGCTTGCACAATCTGCCTCTCCGATAGGCTGAG
65 GACAGCACGCAGGGGGGATCGGGTCGATCCCAGGCTTGCACATTCTGCCTCTCCGATCGTC-GAG
*
20164421 CGCCCGCACGCCCCGTTTCATGGGTTGGCT
129 CGCCCGCACG-CTCGTTTCATGGGTTGGCT
* * * * * * ** * * * *
20164451 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGA-CTGAGGGTTGTGGCAACTGGGT
1 TAAGCATACGAAGTTCATTCCATGTCTAAG-ACCAGATCGGATC-GAGGGTTGCAGTAGCAGGAT
* * * *
20164514 CGATAGCACGCAGAGGGGGATCGGGTCAATCCCCA-GCTTGCACATTATGCCTCTCCGGTCGGCT
64 CGACAGCACGCAG-GGGGGATCGGGTCGAT-CCCAGGCTTGCACATTCTGCCTCTCCGATC-G-T
* *
20164578 C-AGCACCCGCACACTCGTTTCATGGGTTGAG-T
125 CGAGCGCCCGCACGCTCGTTTCATGGGTTG-GCT
* *
20164610 TAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCAGTAGCAGGATC
1 TAAGCATACGAAGTTCATT-CCATGTCTAAGACCAGATCGGATCGAGGGTTGCAGTAGCAGGATC
* *
20164674 GACAGCACACAGGGGGGATCGGGTCGATCCCAGGCTTGCGCATTCTGCCTCTCCGATCGATCGAG
65 GACAGCACGCAGGGGGGATCGGGTCGATCCCAGGCTTGCACATTCTGCCTCTCCGATCG-TCGAG
* * *
20164739 CGCCCGCATGCTCATTTCGTGGGTTGGCT
129 CGCCCGCACGCTCGTTTCATGGGTTGGCT
20164768 TAAGCATACGAAGTTCATTCCATGTCTAAG
1 TAAGCATACGAAGTTCATTCCATGTCTAAG
20164798 CATACGGAGT
Statistics
Matches: 282, Mismatches: 50, Indels: 31
0.78 0.14 0.09
Matches are distributed among these distances:
157 11 0.04
158 95 0.34
159 118 0.42
160 53 0.19
161 4 0.01
162 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
TAAGCATACGAAGTTCATTCCATGTCTAAGACCAGATCGGATCGAGGGTTGCAGTAGCAGGATCG
ACAGCACGCAGGGGGGATCGGGTCGATCCCAGGCTTGCACATTCTGCCTCTCCGATCGTCGAGCG
CCCGCACGCTCGTTTCATGGGTTGGCT
Found at i:20164797 original size:26 final size:26
Alignment explanation
Indices: 20164768--20164823 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
20164758 TGGGTTGGCT
20164768 TAAGCATACGAAGTTCATTC-CATGTC
1 TAAGCATACGAAGTTCATTCGCA-GTC
* *
20164794 TAAGCATACGGAGTTGATTCGCAGTC
1 TAAGCATACGAAGTTCATTCGCAGTC
20164820 TAAG
1 TAAG
20164824 ATCAAACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCGCAGTC
Found at i:20164900 original size:858 final size:845
Alignment explanation
Indices: 20163340--20165349 Score: 2454
Period size: 858 Copynumber: 2.4 Consensus size: 845
20163330 CCACCCGTTC
* ** ** * * *
20163340 GATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCGCACGCTTGTTTTATGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * *
20163405 GACTTAGGAATACAGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATTAG
66 GACTTAGGAATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCAG
* * * * * * * * * * *
20163470 CCCAGACCAAGGGTTGCCA-TAGCACGATCGGCAGCACGTAGGGGGGACCGGGCTGATCCCCGGC
131 ACCGGATCGAGGGTTG-CAGTAGCAGGATCGACAGCACGCAGGAGGGATCGAGCCGATCCCCGGC
* * ** *
20163534 TTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCA
195 TTGCACAATCTGCCTCTCCGATAGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
* * * * *
20163599 TAGGGAGTTCATTCCATGTCTAAG-ACCAGTCGGACTGAGGGTTGTGGTAGCGGGATCGACAGCA
260 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAACGGGATCGACAGCA
* * * * * *
20163663 CGTAGAGGGGGACCGGGTCGATCCCCGGTTTGCGCATTATGCCTCTCCAACCGACTTAGCACCCG
325 CGCAGAGGGGGACCGGGTCAATCCCCAGCTTGCACATTATGCCTCTCCAACCGACTCAGCACCCG
* * * *
20163728 TACGCTCATTTCACGGGTTGAGTTAGGCATACAAACTTCATTCCCATTCTAAGATTAGACTGAAC
390 CACACTCATTTCACGGGTTGAGTTAGGCATACAAACTTCATTCCCAGTCTAAGATCAGACTGAAC
* * * * * *
20163793 CGAGGGTTGCGTTAGCAAGATGGATAGCACGCAGGGGGGGATCGGGCTGGTCCCCGACTTATGCA
455 CGAGGGTTGCGTTAGCAAGATCGACAGCACACAGGGGGGGATCGGGCTGATCCCAGACTTACGCA
* * * *
20163858 TTCTGCCTCTCCGGCCGGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
520 TTCTGCCTCTCCGACCGGCTGAGAGCCCGCACACTCATTTCGTGGGTTGGCTTAAGCATACGAAG
* *
20163923 TTCATTCAATGTCTAAGCATACGGAGTTCATTTCAAGTCTAAGATCGAACCAGACCGAAGGTTGC
585 TTCATTCAATGTCTAAGCATACGGAGTTCATTTCAAGTCTAAGATCAAACCAGACAGAAGGTTGC
** * * * ** ** *
20163988 TGCAGTAGGACCAGCAGCAGGATCTGTAACACGTAGGGGGGACTGGGTCGATCCCTAGCTTGTGC
650 TGCAACAAGACCAGCAGCAGGATCGGCAACACACAGGGGGGACTGGACCGATCCCCAGCTTGTGC
*
20164053 ATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
715 ATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* *
20164118 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCACGA-AGAGGGGGATC-GA
780 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACAC-ACAGAGGGGGACCAG-
20164181 GCT
843 GCT
*
20164184 GATCCCC-AGCTTGCGTATTATGCCTCTCCGACTAGCCTCTACGATCGGCTGAGCGCCCGCACGC
1 GATCCCCGA-CTTGCGCATTATG-C-CT----CT---C-C-A-G-TCGGCTGAGCGCCCGCACGC
* * **
20164248 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTTC
52 TCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTC
* * *
20164313 CAGTCTAAGACCAGATCGGATCGAGGGTTGCAGTAGCAGGATCGACAGCATGCAGGAGGGATCGA
117 CAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGAGGGATCGA
* *
20164378 GTCGATCCCCGGCTTGCACAATCTGCCTCTCCGATAGGCTGAGCGCCCGCACGCCCCGTTTCATG
182 GCCGATCCCCGGCTTGCACAATCTGCCTCTCCGATAGACTGAGCGCCCGCACG-CCCGTTTCATG
20164443 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAA
246 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAA
* * **
20164508 CTGGG-TCGATAGCACGCAGAGGGGGATCGGGTCAATCCCCAGCTTGCACATTATGCCTCTCCGG
311 C-GGGATCGACAGCACGCAGAGGGGGACCGGGTCAATCCCCAGCTTGCACATTATGCCTCTCCAA
* * * * * *
20164572 TCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGAGTTAGGCATACGAAGTTCATTCCCAGTCT
375 CCGACTCAGCACCCGCACACTCATTTCACGGGTTGAGTTAGGCATACAAACTTCATTCCCAGTCT
* * *
20164637 AAGATCAGA-TCGGATCGAGGGTTGCAG-TAGCAGGATCGACAGCACACA-GGGGGGATCGGG-T
440 AAGATCAGACT-GAACCGAGGGTTGC-GTTAGCAAGATCGACAGCACACAGGGGGGGATCGGGCT
* * * * * **
20164698 CGATCCCAGGCTTGCGCATTCTGCCTCTCCGATC-GATCGAGCGCCCGCATGCTCATTTCGTGGG
503 -GATCCCAGACTTACGCATTCTGCCTCTCCGACCGGCT-GAGAGCCCGCACACTCATTTCGTGGG
* * *
20164762 TTGGCTTAAGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTGA-TTCGCAGTCTAAGAT
566 TTGGCTTAAGCATACGAAGTTCATTCAATGTCTAAGCATACGGAGTTCATTTC-AAGTCTAAGAT
** * * * *
20164826 CAAACTGGATAGATGGTTG-TGACAACAATACCAGCAGCAGGATCGGCAGCACACAGGGGGGACT
630 CAAACCAGACAGAAGGTTGCTG-CAACAAGACCAGCAGCAGGATCGGCAACACACAGGGGGGACT
* * * * * * **
20164890 GGACCGATCCCCAGCTTTTTCATTTTGCCTCTCCGGCCGGTTGAGCGCCCGTACGCTCGTTTTGT
694 GGACCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCAT
20164955 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
759 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
*
20165020 ACACACAGAGGGGGACCAGGTT
824 ACACACAGAGGGGGACCAGGCT
20165042 GATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * *
20165107 GACTTAGAAATACGGAGTTCATCCCTAGTCTAAGCGTACAGAGTTCATTTCCAGTCTAAGATCAG
66 GACTTAGGAATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCAG
* * *
20165172 ACCGG-TCTGAGGGTTGC-GACAGCAGGATCGACAGCACGCA-GAGGGGATCAAGCCGGTCCCCG
131 ACCGGATC-GAGGGTTGCAG-TAGCAGGATCGACAGCACGCAGGA-GGGATCGAGCCGATCCCCG
* * * * * *
20165234 GCTTG-AGAATTTGCCTCTCCGGCTA-ACTGAGTGCCCGCATGCCCATTTCATGGGTTGGCTTAG
193 GCTTGCACAATCTGCCTCTCC-GATAGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * *
20165297 GCGTAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCA
257 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCA
20165350 GTCAGATCGA
Statistics
Matches: 994, Mismatches: 141, Indels: 63
0.83 0.12 0.05
Matches are distributed among these distances:
843 71 0.07
844 48 0.05
845 148 0.15
846 3 0.00
847 1 0.00
848 1 0.00
849 1 0.00
850 2 0.00
852 2 0.00
853 1 0.00
856 5 0.01
857 178 0.18
858 363 0.37
859 166 0.17
860 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (845 bp):
GATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
GACTTAGGAATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCAG
ACCGGATCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGAGGGATCGAGCCGATCCCCGGCT
TGCACAATCTGCCTCTCCGATAGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAACGGGATCGACAGCAC
GCAGAGGGGGACCGGGTCAATCCCCAGCTTGCACATTATGCCTCTCCAACCGACTCAGCACCCGC
ACACTCATTTCACGGGTTGAGTTAGGCATACAAACTTCATTCCCAGTCTAAGATCAGACTGAACC
GAGGGTTGCGTTAGCAAGATCGACAGCACACAGGGGGGGATCGGGCTGATCCCAGACTTACGCAT
TCTGCCTCTCCGACCGGCTGAGAGCCCGCACACTCATTTCGTGGGTTGGCTTAAGCATACGAAGT
TCATTCAATGTCTAAGCATACGGAGTTCATTTCAAGTCTAAGATCAAACCAGACAGAAGGTTGCT
GCAACAAGACCAGCAGCAGGATCGGCAACACACAGGGGGGACTGGACCGATCCCCAGCTTGTGCA
TTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACACACAGAGGGGGACCAGGCT
Found at i:20165360 original size:21 final size:21
Alignment explanation
Indices: 20165331--20165383 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
20165321 AAGCCCCAAC
*
20165331 CAGACCGAGGGTTGTGGCAGT
1 CAGATCGAGGGTTGTGGCAGT
20165352 CAGATCGAGGGTTGTGGCAGT
1 CAGATCGAGGGTTGTGGCAGT
20165373 CAGATCGAGGG
1 CAGATCGAGGG
20165384 CGAGATCGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
CAGATCGAGGGTTGTGGCAGT
Found at i:20165525 original size:26 final size:26
Alignment explanation
Indices: 20165489--20165541 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20165479 GTTGACTTAG
*
20165489 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
* *
20165515 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
20165541 G
1 G
20165542 ATTAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:20167099 original size:26 final size:26
Alignment explanation
Indices: 20167069--20167124 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
20167059 GTTGACTTAG
*
20167069 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
20167095 GCATACGAAGTTCATGCTCAGTCTGA
1 GCATACGAAGTTCATCCCCAGTCTAA
20167121 GCAT
1 GCAT
20167125 TGAGGGTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20173438 original size:26 final size:26
Alignment explanation
Indices: 20173387--20173442 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
20173377 TTTGTTGACT
* *
20173387 TAAGCATACGGAGTTCATCCTTAGTC
1 TAAGCAAACGGAGTTCATCCTCAGTC
20173413 TAAGCAAACGGAGTTCATTCC-CAGTC
1 TAAGCAAACGGAGTTCA-TCCTCAGTC
20173439 TAAG
1 TAAG
20173443 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCAAACGGAGTTCATCCTCAGTC
Found at i:20173801 original size:159 final size:158
Alignment explanation
Indices: 20173420--20173807 Score: 392
Period size: 159 Copynumber: 2.4 Consensus size: 158
20173410 GTCTAAGCAA
** *
20173420 ACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTACTACAGTAGGATCGACAGCA
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTACGGCAGCAGGATCGACAGCA
* ** * * * * * *
20173484 CGCAGGGGGGACCCGACCGATCCTCGGCTTACTCATTCTGCCTCTCCGGTCGGCTGAGTGCCTGC
65 CGTAGGGAAGACCAGACCGATCCTCGGCTTACTCATTATGCCTCTCCGCTCGGCTCAATGCCCGC
*
20173549 ACACCCGTTTCATGGGTTGGCTTAGGCAT
130 ACACCCGTTTCATGGGTTGGATTAGGCAT
* * ** * * * * * *
20173578 AGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAGACTGAGGGTTATGGCAGCGGGACCGGCAGC
1 ACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTACGGCAGCAGGATCGACAGC
* * *
20173641 ACGTAGAGGAAGAGCAGGCCGATCCTCGGCTT-GTGCATTATGCCTCTCCGACT-GGCTCAATGC
64 ACGTAG-GGAAGACCAGACCGATCCTCGGCTTACT-CATTATGCCTCTCCG-CTCGGCTCAATGC
* *
20173704 CCGCACGCTCGTTTCATGGGTT-GATTGAGGCAT
126 CCGCACACCCGTTTCATGGGTTGGATT-AGGCAT
* * *
20173737 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGATAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGACAGCAC
20173802 GTAGGG
66 GTAGGG
20173808 GGGATGGGCT
Statistics
Matches: 180, Mismatches: 41, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
157 5 0.03
158 52 0.29
159 117 0.65
160 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGACAGCAC
GTAGGGAAGACCAGACCGATCCTCGGCTTACTCATTATGCCTCTCCGCTCGGCTCAATGCCCGCA
CACCCGTTTCATGGGTTGGATTAGGCAT
Found at i:20174312 original size:26 final size:26
Alignment explanation
Indices: 20174260--20174312 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20174250 GTTGACTTAG
*
20174260 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTATAA
20174286 GCATAC-AGAGTTCATTGCCA-GTATAA
1 GCATACGA-AGTTCATT-CCATGTATAA
20174312 G
1 G
20174313 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTATAA
Found at i:20174493 original size:26 final size:26
Alignment explanation
Indices: 20174456--20174505 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20174446 GTTGATTTAG
20174456 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20174482 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATCCCCAGTCT
20174506 GAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20175361 original size:157 final size:157
Alignment explanation
Indices: 20174829--20175371 Score: 516
Period size: 157 Copynumber: 3.4 Consensus size: 157
20174819 CGACGACATT
** * * *
20174829 GGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGA-TCGAAGGTTGCGGTAGTAGGATCGG
1 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GAGGGTTGCGGTAGCAGGATCGA
* * * * * * ** ** *
20174893 CAGCACGTAAGGGGGACCA-GGTCAATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGT
65 CAGCACG-CAGAGGGA-TAGGGCCGATCCCAGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
20174957 GCCCGCACGCCCGTTCCGTGGGTTGGCTTA
128 ACCCGCACGCTCGTTTCATGGGTTGGCTTA
** * * ** * * * * * *
20174987 GGCATAGGGAGTTCATTCCAAGTCCAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGA
1 GGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGA
* * *
20175051 CAGCACGCAGAGGATGATCGGGCCGATCCCAGACTTGTGCATTATGCCTCTCCGGTCGGCTCAGC
65 CAGCACGCAGAGG--GATAGGGCCGATCCCAGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGC
* * *
20175116 TCCCGCACGCTCATTTCATGGGTTGACTTA
128 ACCCGCACGCTCGTTTCATGGGTTGGCTTA
* * * * * * * *
20175146 GGCATACAGAGTTTATTCCCATTCTAAGATCGGATCGAACTGAGGGTTACGATCGCAGGATCGAT
1 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGAC
* * **
20175211 AGCACGCAGAGGGATAGGGCCGGTGCTTGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACC
66 AGCACGCAGAGGGATAGGGCCGATCCCAGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACC
* *
20175276 CGTAGGCTCGTTTCATGGGTTGGCTTA
131 CGCACGCTCGTTTCATGGGTTGGCTTA
* * *
20175303 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGACCAAC
1 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGAC
20175368 AGCA
66 AGCA
20175372 AGATCGACAG
Statistics
Matches: 299, Mismatches: 80, Indels: 13
0.76 0.20 0.03
Matches are distributed among these distances:
157 130 0.43
158 53 0.18
159 116 0.39
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGAC
AGCACGCAGAGGGATAGGGCCGATCCCAGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTA
Found at i:20175695 original size:25 final size:26
Alignment explanation
Indices: 20175661--20175709 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20175651 GACTTAGGAG
20175661 TACGGAGTTCA-TCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
20175686 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20175710 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:20176189 original size:26 final size:26
Alignment explanation
Indices: 20176159--20176211 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20176149 GATGCCTTAG
*
20176159 GCATACGAAATTCATT-CCATGTCTAA
1 GCATAAGAAATTCATTCCCA-GTCTAA
* *
20176185 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGAAATTCATTCCCAGTCTAA
20176211 G
1 G
20176212 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGAAATTCATTCCCAGTCTAA
Found at i:20176407 original size:26 final size:26
Alignment explanation
Indices: 20176355--20176407 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20176345 GTTGACTTAG
* *
20176355 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAATCTAA
20176381 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
20176407 G
1 G
20176408 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:20176713 original size:26 final size:26
Alignment explanation
Indices: 20176677--20176729 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20176667 GTTGGCTTAG
20176677 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
20176703 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
20176729 G
1 G
20176730 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:20178523 original size:26 final size:26
Alignment explanation
Indices: 20178487--20178539 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20178477 GTTGGCTTAG
*
20178487 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATAAGGAGTTAATTCCCA-GTCTAA
*
20178513 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTAATTCCCAGTCTAA
20178539 G
1 G
20178540 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTAATTCCCAGTCTAA
Found at i:20178664 original size:184 final size:183
Alignment explanation
Indices: 20178337--20178698 Score: 487
Period size: 184 Copynumber: 2.0 Consensus size: 183
20178327 TAGGCATACA
** * * *
20178337 GAGTTCATTCCCAGTCTAAGATTTGACACACTGAGGGTTGCGATAGTAGGATCGACAGCGAGCAG
1 GAGTTCATTCCCAGTCTAAGATCGGACACACCGAGGGTTGCGACAGTAGGATCGACAGCAAGCAG
* * * * * * *
20178402 GGGGGACCGGGTCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCT
66 GGGGGACCGGGTCAAACCCTGGCTAGCGCATTCTGCCTCCCCGATCGGCTGAGCACCCGCACGCC
*
20178467 CATTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATAAG
131 CATTTCATGGGTTGGCTTAGGCATACGGAGTTAATCCCATGTCTAAGCATAAG
20178520 GAGTTCATTCCCAGTCTAAGATCGGAC-CGGACCGAGGGTTGCGACAGTAGGATCGACAGCAAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACAC--ACCGAGGGTTGCGACAGTAGGATCGACAGCAAGC
* * *
20178584 GGGGGGGACCGGG-CAGAA-CCTCGGCTAGCGCATTCTGCCTCCCCGATCGGTTGAGCACCTGCA
64 AGGGGGGACCGGGTCA-AACCCT-GGCTAGCGCATTCTGCCTCCCCGATCGGCTGAGCACCCGCA
* * * *
20178647 TGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGC
127 CGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTAATCCCATGTCTAAGC
20178699 CCCAGTCGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
182 1 0.01
183 30 0.19
184 124 0.80
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (183 bp):
GAGTTCATTCCCAGTCTAAGATCGGACACACCGAGGGTTGCGACAGTAGGATCGACAGCAAGCAG
GGGGGACCGGGTCAAACCCTGGCTAGCGCATTCTGCCTCCCCGATCGGCTGAGCACCCGCACGCC
CATTTCATGGGTTGGCTTAGGCATACGGAGTTAATCCCATGTCTAAGCATAAG
Found at i:20179023 original size:26 final size:26
Alignment explanation
Indices: 20178987--20179039 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20178977 GTTGGCTTAG
20178987 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
20179013 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
20179039 G
1 G
20179040 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:20179373 original size:26 final size:26
Alignment explanation
Indices: 20179343--20179395 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20179333 GTTGGCTTAG
*
20179343 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20179369 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20179395 G
1 G
20179396 ATGGGTTACG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20179721 original size:26 final size:26
Alignment explanation
Indices: 20179685--20179737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20179675 GTTGACTTAG
*
20179685 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20179711 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20179737 G
1 G
20179738 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20180246 original size:26 final size:26
Alignment explanation
Indices: 20180210--20180262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20180200 GTTAACTTAG
20180210 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20180236 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20180262 G
1 G
20180263 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20180353 original size:22 final size:23
Alignment explanation
Indices: 20180328--20180380 Score: 54
Period size: 26 Copynumber: 2.2 Consensus size: 23
20180318 GGCTGATCCT
20180328 CGACTTGCGCATTCT-ACCTCTC
1 CGACTTGCGCATTCTGACCTCTC
*
20180350 CGACCGGCTTGCGCATTCTGGCCTCTC
1 CGA----CTTGCGCATTCTGACCTCTC
20180377 CGAC
1 CGAC
20180381 AGGCTGAACG
Statistics
Matches: 25, Mismatches: 1, Indels: 9
0.71 0.03 0.26
Matches are distributed among these distances:
22 3 0.12
23 1 0.04
26 12 0.48
27 9 0.36
ACGTcount: A:0.11, C:0.42, G:0.21, T:0.26
Consensus pattern (23 bp):
CGACTTGCGCATTCTGACCTCTC
Found at i:20180367 original size:26 final size:27
Alignment explanation
Indices: 20180331--20180385 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
20180321 TGATCCTCGA
*
20180331 CTTGCGCATTCT-ACCTCTCCGACCGG
1 CTTGCGCATTCTGACCTCTCCGACAGG
*
20180357 CTTGCGCATTCTGGCCTCTCCGACAGG
1 CTTGCGCATTCTGACCTCTCCGACAGG
20180384 CT
1 CT
20180386 GAACGCCCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.11, C:0.40, G:0.22, T:0.27
Consensus pattern (27 bp):
CTTGCGCATTCTGACCTCTCCGACAGG
Found at i:20181489 original size:159 final size:156
Alignment explanation
Indices: 20181123--20181535 Score: 381
Period size: 159 Copynumber: 2.6 Consensus size: 156
20181113 CCAGTCTCCA
20181123 GCATAACGGAGTTCATTCCCAGTCTAAGATCGGACGCAGATCGAGGGGTTTGTGACAAGTTAGGA
1 GCAT-ACGGAGTTCATTCCCAGTCTAAGATCGGAC-CAGATCGA-GGG-TTGTGACAAGTTAGGA
* * * * * * *
20181188 TCAGCAGCACGCAGGGGGGATAGGTCGATCCTCAGCTTACGCATTCTGCTCTCCGACCGGCTGAG
62 CCAGCAGCACACAGGGGGGACAGGCCGATCCCCAGCTTACGCATTATGCTCTCCGACCGGCTGAA
* * *
20181253 CGCCCGCACGCCGTTTCATGGTTGGCTTAG
127 CGCCCGAACACCGTTTCATGGTTGACTTAG
* * ** * * * *
20181283 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGC-AG-TGGGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCAGATCGAGGGTTGTGACAAGTTAGGACC
* * *
20181344 AGTAGCACACAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTGA
64 AGCAGCACACAG-GGGGGACAG-GCCGATCCCCAGCTTACGCATTATG-CTCTCCGACCGGCTGA
* *
20181409 ATGCCCGAACACTCGTTTCGTGGGTTGACTTAG
126 ACGCCCGAACAC-CGTTTCAT-GGTTGACTTAG
* * * * * *
20181442 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAA--CAGGATC-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGACAAGTTAGGACCAG
*
20181504 ACAGCACGCTAGGGGGGACTAGGCCGATCCCC
66 -CAGCACAC-AGGGGGGAC-AGGCCGATCCCC
20181536 GACTTGTGCA
Statistics
Matches: 200, Mismatches: 40, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
154 15 0.08
155 9 0.05
156 27 0.14
157 27 0.14
158 20 0.10
159 89 0.44
160 13 0.06
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.20
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGACAAGTTAGGACCAG
CAGCACACAGGGGGGACAGGCCGATCCCCAGCTTACGCATTATGCTCTCCGACCGGCTGAACGCC
CGAACACCGTTTCATGGTTGACTTAG
Found at i:20181640 original size:26 final size:26
Alignment explanation
Indices: 20181604--20181653 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20181594 GGCTTAGGCA
20181604 TACGGACTTCATT-CCATGTCTAAGCG
1 TACGGACTTCATTCCCA-GTCTAAGCG
*
20181630 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGACTTCATTCCCAGTCTAAG
20181654 ATCAAACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGACTTCATTCCCAGTCTAAGCG
Found at i:20182010 original size:26 final size:26
Alignment explanation
Indices: 20181981--20182033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20181971 GTTGACTTAG
20181981 GCATACGGAGTTCACCCCTAGTCTAA
1 GCATACGGAGTTCACCCCTAGTCTAA
**
20182007 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCACCCCTAGTCTAA
20182033 G
1 G
20182034 ATCAACCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCTAGTCTAA
Found at i:20182725 original size:26 final size:26
Alignment explanation
Indices: 20182695--20182747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20182685 GTTGGCTTAG
20182695 GCATACGAACTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
* * *
20182721 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
20182747 G
1 G
20182748 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAGTCTAA
Found at i:20183033 original size:26 final size:26
Alignment explanation
Indices: 20183004--20183056 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20182994 GTTAGCTTAG
20183004 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
20183030 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20183056 G
1 G
20183057 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20183420 original size:26 final size:26
Alignment explanation
Indices: 20183384--20183436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20183374 GTTGACCTAG
20183384 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20183410 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20183436 G
1 G
20183437 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20183774 original size:159 final size:157
Alignment explanation
Indices: 20183479--20183910 Score: 412
Period size: 159 Copynumber: 2.7 Consensus size: 157
20183469 TCGATAGTAT
* * * * * *
20183479 GCAGGAGGGATCGGGTTGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCA
1 GCAGGAGGGATC-GGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCA
* * * * *
20183544 -AGCCCATTTCATGGGTCGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCTGGAC
65 CA-CTCGTTTCATGGGT-GGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCTAGATGGAC
* * * *
20183607 CGAGGGTTGTGGCAGCAGGA-CTGACAGCAC
128 CAAAGGTTGCGACAGCAGGATC-GACAGCAC
* * *
20183637 GCAGAGAGGGATCAGGTCAATCCCTGACTTGTGCATTATGCCTCTTCGGTCGGTTGAGCGCCCGC
1 GCAG-GAGGGATC-GGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGC
* *
20183702 ACACTCGTTTCATGGGTGGACTTAGGCATACGGAGTTCATTCCCA-GTTTAAGATC-AGATCGGA
64 ACACTCGTTTCATGGGTGG-CTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCTAGAT-GGA
* *
20183765 CCAAAGGTTGCGACAGTAGGATCGATAGCAC
127 CCAAAGGTTGCGACAGCAGGATCGACAGCAC
* * * ** * * * *
20183796 ACAGG-GGGATCGAGCCGGT-CCTCGACTTACGCATTCTGCCTCTCCGGTCGGTTTAACACCTGC
1 GCAGGAGGGATCG-GTCGATCCCT-GACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGC
* *
20183859 ACATTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
64 ACACTCGTTTCATGGG-TGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG
20183911 CATACAGAGT
Statistics
Matches: 226, Mismatches: 38, Indels: 21
0.79 0.13 0.07
Matches are distributed among these distances:
156 7 0.03
157 82 0.36
158 13 0.06
159 119 0.53
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCAGGAGGGATCGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCAC
ACTCGTTTCATGGGTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCTAGATGGACCAA
AGGTTGCGACAGCAGGATCGACAGCAC
Found at i:20183920 original size:26 final size:26
Alignment explanation
Indices: 20183884--20183936 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20183874 GTTGGCTTAG
*
20183884 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20183910 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20183936 G
1 G
20183937 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20184193 original size:881 final size:881
Alignment explanation
Indices: 20182934--20184838 Score: 2289
Period size: 881 Copynumber: 2.2 Consensus size: 881
20182924 ACCGATTCGA
* * * * * * ** *
20182934 TCCCCAGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCACAGGTTAG
1 TCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAACACCCGCACACTCGTTTCATGGGTTGG
* *
20182999 CTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGAC
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * * *
20183064 CGGACTGAGGGTTGCAGCAGCAGGACTAGCAGTAGGATCGATAGCCCACTGGAGGGACCGAGCCT
131 CGGACCGAGGGTTACAGCAGCACGACCAACAGCAGGATCGATAGCCCACGGGAGGGACCGAGCCG
* * * * ** ** * * *
20183129 ATTCCCGGCTTACGTATTCTGCCTTTCTGATTGGTTGAGTGCCTGCACACTCATTTCGTGGGTTG
196 ATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACACTCATGTCATGGGTTG
* * * ** * *
20183194 GCTTAGGCGTATGAAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCAAGA
261 GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTATGGTAGCAAGA
* * * * **
20183259 CCGACAGCAGGATCGACAGCACATAGAGGGAAATCGGGCTGATCCTCGGCTTGCGTATTATGCCT
326 CCGACAGCAGGATCGACACCACACAGAGGGAAACCGGGCTGATCCCCGGCTTGCACATTATGCCT
** * *
20183324 CTTCAG-TCGGCCTCTCCGACC-AGCTGAATGCTCGCACCCATG-TTTCGTGGGTTGACCTAGGC
391 CTTCAGCT-GGCCTCTCCGACCGA-CTGAACACCCGCACCC-TGATTTCATGGGTTGACCTAGGC
* ** *
20183386 ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCCGA-CC
453 ATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAAACCAGACCC
* * * * *
20183450 GAGGGTTGCGGTAGCTA-GATC-GATAGT-ATGCAGGAGGGATCGGGTTGAT-CCCTGGCTTGTG
518 GAGGGTTGCGGCAG-TAGGATCAG-TA-TCACGCAGG-GGGACCAGGTTGATACCC-GGCTTGCG
* *
20183511 CATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCAAGCCCATTTCATGGGTCGGCTTAGGCATAGGG
578 CATTCTGCCTCTCCGACCAGCTGAGTGCACGCAAGCCCATTTCATGGGTCGGCTTAGGCATAGGG
* * *
20183576 AGTTCATTCCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGCAGCAGGACTGACAGCACGCA
643 AGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAACAGGACCGACAGCACGCA
** * * * * * *
20183640 GA-GAGGGATCAGG-TCAATCC-CTGACTTGTGCATTATGCCTCTTCGGTCGGTTGAGCGCCCGC
707 GAGGA-GGA-CAGGCTCAATCCTC-GACTTACGCATTATGCCTCTCCGATCGGCTCAGAGCCCGA
* *
20183702 ACACTCGTTTCATGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTTTAAG-ATCAGATCGGAC
769 ACACTCGTTTCATGGGTGGACTTAGGCATACGGACTTCATTCCCAGTCTAAGAAT-AGATCGGAC
* *
20183766 CAAAGGTTGCGACAGTAGGATCGATAGCACACA-GGGGGATCGAGCCGG
833 CAAAGGTTACGACAGTAGGATCGACAGCACACAGGGGGGATCGAGCCGG
* * * * * *
20183814 TCCTC-GACTTACGCATTCTGCCTCTCCGGTCGGTTTAACACCTGCACATTCGTTTCGTGGGTTG
1 TCCCCAG-CTTACGCATTCTGCCTCTCCGATCGGTTGAACACCCGCACACTCGTTTCATGGGTTG
* *
20183878 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCTTTCCCAGTCTAAGATCAGA
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
* * *
20183943 CCGGACCGAGGGTTAC-GACAGCACGACCAACAGCAGGATCGATAGCATGCA-GGGGGGGACCGG
130 CCGGACCGAGGGTTACAG-CAGCACGACCAACAGCAGGATCGATAGC--CCACGGGAGGGACCGA
* * * **
20184006 GCCGATCCCCGGGTTATGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTTGTGTCATGG
192 GCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACACTCATGTCATGG
*
20184071 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTATGGTAGC
257 GTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTATGGTAGC
* * * *
20184136 AGGACCGACAGCGGGATCGACACCACGCAGAGGTG-GACCGGGCTGATCCCCGGCTTGCACATTA
322 AAGACCGACAGCAGGATCGACACCACACAGAGG-GAAACCGGGCTGATCCCCGGCTTGCACATTA
* * ** * * * *
20184200 TGCCTTTTCAGCTGGCCTCTCTGGTCGACTGAGCACCCGCACGCTGATTTCATGGGTTGACTTTG
386 TGCCTCTTCAGCTGGCCTCTCCGACCGACTGAACACCCGCACCCTGATTTCATGGGTTGACCTAG
20184265 GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAAACCAGAC
451 GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAAACCAGAC
* *
20184330 CCGAGGGTTGTGGCAGTAGGATCAGTATCACGTAGGGGGACCAGGTTGATACCCGGCTTGCGCAT
516 CCGAGGGTTGCGGCAGTAGGATCAGTATCACGCAGGGGGACCAGGTTGATACCCGGCTTGCGCAT
* * * * *
20184395 TCTGCCTCTCCGATCGGCTGAGTGCACGCACGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGT
581 TCTGCCTCTCCGACCAGCTGAGTGCACGCAAGCCCATTTCATGGGTCGGCTTAGGCATAGGGAGT
* * * *
20184460 TCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAACGGGACCGACAGCTCGTAGAGG
646 TCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACAGGACCGACAGCACGCAGAGG
* * *
20184525 AGGACTGGCTCAATCCTCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGAGCCCGAACGCTCG
711 AGGACAGGCTCAATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGAGCCCGAACACTCG
* * * * * *
20184590 TTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCGGTCTAAGAATGGATCGGATCGAAGGTT
776 TTTCATGGGTGGACTTAGGCATACGGACTTCATTCCCAGTCTAAGAATAGATCGGACCAAAGGTT
** * * *
20184655 ACGGTAGTAGGATCGACAGTACACAGGGGGGATCGGGTCGG
841 ACGACAGTAGGATCGACAGCACACAGGGGGGATCGAGCCGG
* * * *
20184696 TCCCCAGCTTGCGCATTCTGCCTCTCTGATCGGTTGAGCACCCGCACACTCTTTTCATGGGTTGG
1 TCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAACACCCGCACACTCGTTTCATGGGTTGG
* * * * *
20184761 CTTAGGCATACGGACTTCATTCCATTTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGGC
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
*
20184826 CGGACCAAGGGTT
131 CGGACCGAGGGTT
20184839 GTGGTAGCAG
Statistics
Matches: 860, Mismatches: 145, Indels: 38
0.82 0.14 0.04
Matches are distributed among these distances:
879 2 0.00
880 151 0.18
881 530 0.62
882 175 0.20
883 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (881 bp):
TCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAACACCCGCACACTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTACAGCAGCACGACCAACAGCAGGATCGATAGCCCACGGGAGGGACCGAGCCG
ATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACACTCATGTCATGGGTTG
GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTATGGTAGCAAGA
CCGACAGCAGGATCGACACCACACAGAGGGAAACCGGGCTGATCCCCGGCTTGCACATTATGCCT
CTTCAGCTGGCCTCTCCGACCGACTGAACACCCGCACCCTGATTTCATGGGTTGACCTAGGCATA
CGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAAACCAGACCCGAG
GGTTGCGGCAGTAGGATCAGTATCACGCAGGGGGACCAGGTTGATACCCGGCTTGCGCATTCTGC
CTCTCCGACCAGCTGAGTGCACGCAAGCCCATTTCATGGGTCGGCTTAGGCATAGGGAGTTCATT
CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACAGGACCGACAGCACGCAGAGGAGGAC
AGGCTCAATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGAGCCCGAACACTCGTTTCA
TGGGTGGACTTAGGCATACGGACTTCATTCCCAGTCTAAGAATAGATCGGACCAAAGGTTACGAC
AGTAGGATCGACAGCACACAGGGGGGATCGAGCCGG
Found at i:20184295 original size:26 final size:26
Alignment explanation
Indices: 20184265--20184317 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20184255 GTTGACTTTG
*
20184265 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20184291 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20184317 G
1 G
20184318 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20184816 original size:26 final size:26
Alignment explanation
Indices: 20184766--20184818 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20184756 GTTGGCTTAG
*
20184766 GCATACGGACTTCATTCCATTTCTAA
1 GCATACGGACTTCATTCCATGTCTAA
*
20184792 GCATACGGAGTTCATTCTCA-GTCTAA
1 GCATACGGACTTCATTC-CATGTCTAA
20184818 G
1 G
20184819 ATCGGGCCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGACTTCATTCCATGTCTAA
Found at i:20185003 original size:26 final size:26
Alignment explanation
Indices: 20184973--20185025 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20184963 GTTAACTTAG
*
20184973 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20184999 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20185025 G
1 G
20185026 ACCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20185353 original size:26 final size:26
Alignment explanation
Indices: 20185316--20185368 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20185306 GTTGACTTAG
20185316 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
20185342 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
20185368 G
1 G
20185369 ATCAAACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20185514 original size:343 final size:341
Alignment explanation
Indices: 20184888--20185682 Score: 897
Period size: 343 Copynumber: 2.3 Consensus size: 341
20184878 CAGCACGCAG
* * * *** * * *
20184888 GGGGGACCGAGCTGATCCCCGACTTGTGCATTCTGCCTCTTCGGGCGACTGAGTGCCCGCACGCT
1 GGGGGACCGGGCAGATCCCCGGCTTACACATTCTGCCTC-TCCGGCG-CTGAGCGCCCGAACGCT
* * * * *
20184953 CATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC
64 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCATACAGAGTTCATTCCC
** ** *
20185018 AGTCTAAGACCGGACCGGATCGAGGGTTGCGACAGCAGGATCGACAACACACAGGGGGGACTGGG
129 AGTCTAAGACCAAACCAAATCGAGGATTGCGACAGCAGGATCGACAACACACAGGGGGGACTGGG
* *
20185083 CCTATCCCCGGCTTGCGCATTCTACCTCTTCGGCCGACTGAGCGCCCGTACGCCCATTTCGTGGG
194 CCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGGG
* ** *
20185148 TTGGCTTAGGTATAGGGAGTTCATTCCATGTTTAAGC-CCTAGCCGAACCGAGGGTTGTGGCAGT
259 TTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCTCC-AGCCGAACCGAGGGTTGTGGCAGT
* * **
20185212 GGGACTGGCAGCATGTAGA
323 GGGACCGACAGCACATAGA
* * **
20185231 GGGGGACCGAGTCAG-TCCCTGGCTTACACATTCTGCCTCTCCGGCCAGCTGAGCGCCCTTACGC
1 GGGGGACCG-GGCAGATCCCCGGCTTACACATTCTGCCTCTCCGG-C-GCTGAGCGCCCGAACGC
*
20185295 TCGTTTCGTGCGTTGACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCATAC-GAAGTTCATTC
63 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCATACAG-AGTTCATTC
* * * **
20185359 CCAGTCTAAGATCAAACCAAATCGAGGATTGCGGCAGCAGGATCGACAGCACGTAGGGGGGA-TC
127 CCAGTCTAAGACCAAACCAAATCGAGGATTGCGACAGCAGGATCGACAACACACAGGGGGGACT-
* * * ** * * *
20185423 GGGCCGATCCCTGGCTTGCGCATTTTGACGT-TTTTGTCGGCTGAGCGCCCGCACGCCCGTTTCG
191 GGGCCGATCCCCGGCTTGCGCATTCT-ACCTCTTCGGCCGACTGAGCGCCCGCACGCCCATTTCG
* * *
20185487 TGTGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCTCCAGCTGGACCGAGGGTTGTGGC
255 TGGGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCTCCAGCCGAACCGAGGGTTGTGGC
20185552 AGTGGGACCGACAGCACATAGA
320 AGTGGGACCGACAGCACATAGA
** * * * * *
20185574 GGGGGGTCGGGCCGATCCCCGGCTTACGCATTAT--ATCTCCAGTG-GCTCAGCGCCCGAACGCT
1 GGGGGACCGGGCAGATCCCCGGCTTACACATTCTGCCTCTCC-G-GCGCTGAGCGCCCGAACGCT
*
20185636 CGTTTCGTGGGTTGACTTAGGTATACAGAGTTCAT-TCCTAGTCTAAG
64 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCTCC-AGTCTAAG
20185683 ATCAAACAAA
Statistics
Matches: 379, Mismatches: 62, Indels: 25
0.81 0.13 0.05
Matches are distributed among these distances:
339 3 0.01
340 56 0.15
341 5 0.01
342 10 0.03
343 297 0.78
344 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (341 bp):
GGGGGACCGGGCAGATCCCCGGCTTACACATTCTGCCTCTCCGGCGCTGAGCGCCCGAACGCTCG
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGACCAAACCAAATCGAGGATTGCGACAGCAGGATCGACAACACACAGGGGGGACTGGGCC
GATCCCCGGCTTGCGCATTCTACCTCTTCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGGGTT
GGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCTCCAGCCGAACCGAGGGTTGTGGCAGTGGG
ACCGACAGCACATAGA
Found at i:20185759 original size:155 final size:156
Alignment explanation
Indices: 20185342--20185760 Score: 434
Period size: 156 Copynumber: 2.7 Consensus size: 156
20185332 TCCAGTCTAA
* * * *
20185342 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAAACCAAATCGAGGATTGCGGCAGCAGGATCGAC
1 GCATACAG-AGTTCATTCCAAGTCTAAGATCAAA-CAAACCGAGGGTTGTGGCAGCAGGATCGAC
* *** *
20185406 AGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTTTGACGTTTTTGTCGGCTGAGCGC
64 AGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGACG-TCCAGTCGGCTCAGCGC
* * *
20185471 CCGCACGCCCGTTTCGTGTGTTGGCTTAG
128 CCGAACGCCCGTTTCGTGGGTTGACTTAG
** * * * * ** ** *
20185500 GCATAGGGAGTTCATT-AAATGTCTAAGCTCCAGCTGGACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACAGAGTTCATTCCAA-GTCTAAGATCAAAC-AAACCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
20185564 AGCACATAGAGGGGGGTCGGGCCGATCCCCGGCTTACGCATTAT-ATC-TCCAGT-GGCTCAGCG
64 AGCACGTAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGA-CGTCCAGTCGGCTCAGCG
*
20185626 CCCGAACGCTCGTTTCGTGGGTTGACTTAG
127 CCCGAACGCCCGTTTCGTGGGTTGACTTAG
* * *
20185656 GTATACAGAGTTCATTCCTAGTCTAAGATCAAACAAACCGAGGGTTGTGGCACCAGGATCGACAG
1 GCATACAGAGTTCATTCCAAGTCTAAGATCAAACAAACCGAGGGTTGTGGCAGCAGGATCGACAG
* *
20185721 CACGTAGGTGGGGATCAGGTCGATCCCTGGCTTGCGCATT
66 CACGTAGG-GGGGATCGGGCCGATCCCTGGCTTGCGCATT
20185761 CTGCCTTTTC
Statistics
Matches: 207, Mismatches: 47, Indels: 17
0.76 0.17 0.06
Matches are distributed among these distances:
154 1 0.00
155 57 0.28
156 58 0.28
157 6 0.03
158 53 0.26
159 32 0.15
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCAAGTCTAAGATCAAACAAACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGACGTCCAGTCGGCTCAGCGCCCG
AACGCCCGTTTCGTGGGTTGACTTAG
Found at i:20185839 original size:158 final size:155
Alignment explanation
Indices: 20185342--20185840 Score: 470
Period size: 158 Copynumber: 3.2 Consensus size: 155
20185332 TCCAGTCTAA
* * * *
20185342 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAAATCGAGGATTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCAAA-CAAACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
20185407 GCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTTTGACGTTTT-TGTCGGCTGAGCGC
65 GCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATG-CATTTTCAG-CGGCTGAGCGC
* *
20185471 CCGCACGCCCGTTTCGTGTGTTGGCTTAG
128 CCGAACGCTCGTTTCGTG-GTTGGCTTAG
* * ** * * * ** ** *
20185500 GCATAGGGAGTTCATT-AAATGTCTAAGCTCCAGCTGGACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGAAGTTCATTCCTA-GTCTAAGATCAAAC-AAACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
20185564 AGCACATAGAGGGGGGTCGGGCCGATCCCCGGCTTACGCATTAT--ATCTCCAGTGGCTCAGCGC
64 AGCACGTAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCATTTTCAGCGGCTGAGCGC
*
20185627 CCGAACGCTCGTTTCGTGGGTTGACTTAG
128 CCGAACGCTCGTTTCGT-GGTTGGCTTAG
* *
20185656 GTATAC-AGAGTTCATTCCTAGTCTAAGATCAAACAAACCGAGGGTTGTGGCACCAGGATCGACA
1 GCATACGA-AGTTCATTCCTAGTCTAAGATCAAACAAACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
20185720 GCACGTAGGTGGGGATCAGGTCGATCCCTGGCTTGCGCATTCTGCCTTTTCGGCCCGCTGAGCGC
65 GCACGTAGG-GGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCATTTTCAG-CGGCTGAGCGC
*
20185785 CCGTACGCTCG-TTCTGTAGGTTGGCTTAG
128 CCGAACGCTCGTTTC-GT-GGTTGGCTTAG
* *
20185814 GCATACGAAGTTCATTCTTTGTCTAAG
1 GCATACGAAGTTCATTCCTAGTCTAAG
20185841 CATACGGAGT
Statistics
Matches: 265, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
154 1 0.00
155 58 0.22
156 58 0.22
157 12 0.05
158 105 0.40
159 31 0.12
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATCAAACAAACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCATTTTCAGCGGCTGAGCGCCCG
AACGCTCGTTTCGTGGTTGGCTTAG
Found at i:20185863 original size:26 final size:26
Alignment explanation
Indices: 20185814--20185866 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20185804 GTTGGCTTAG
***
20185814 GCATACGAAGTTCATTCTTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20185840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20185866 G
1 G
20185867 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20186847 original size:158 final size:159
Alignment explanation
Indices: 20186472--20186902 Score: 433
Period size: 160 Copynumber: 2.7 Consensus size: 159
20186462 CACGCAAAGA
* * * * * * *
20186472 GGATCTGGGCGATCCCCGACTTACGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCATGCCCCT
1 GGATC-GGGCGATCCCTGACTTACGCATTATGCCTCTCCGATCGGCTGAGCACCCGCATGCTCAT
* *
20186537 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCCAGCCGGACCGAGGGTT
65 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCCAGCCGGACCGAGGGTT
* * ** ** *
20186602 GTGGCAGTGGGACCGGCAGCACTCAGAGGG
130 GCGACAGTAAGACCAACAGCACGCAGAGGG
* * * * * * *
20186632 GGACCGGGCCGAT-CCTCGGCTCATGCATTATGCCTCTCC-AGTCGGCTCAGCATCCGCACGCTC
1 GGATCGGG-CGATCCCT-GACTTACGCATTATGCCTCTCCGA-TCGGCTGAGCACCCGCATGCTC
* * * * *
20186695 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-AT-CAGACTGGACTGAG
63 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATCCAG-CCGGACCGAG
** *
20186757 GGTTGCGACAGTAAGATTAATAGCACGCAG-GGG
126 GGTTGCGACAGTAAGACCAACAGCACGCAGAGGG
**
20186790 GGATCGGGTCGATCCCTGACTTACGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCATGCTCAT
1 GGATCGGG-CGATCCCTGACTTACGCATTATGCCTCTCCGATCGGCTGAGCACCCGCATGCTCAT
* *
20186855 TTTGTGGGATGGCTTAGGCATACAGGAGTTCATTCCATGTCTAAGCAT
65 TTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCATGTCTAAGCAT
20186903 ACAGAGTTCA
Statistics
Matches: 216, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
158 73 0.34
159 58 0.27
160 85 0.39
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
GGATCGGGCGATCCCTGACTTACGCATTATGCCTCTCCGATCGGCTGAGCACCCGCATGCTCATT
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCCAGCCGGACCGAGGGTTG
CGACAGTAAGACCAACAGCACGCAGAGGG
Found at i:20186913 original size:26 final size:27
Alignment explanation
Indices: 20186872--20186925 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
20186862 GATGGCTTAG
20186872 GCATACAGGAGTTCATT-CCATGTCTAA
1 GCATACAGGAGTTCATTCCCA-GTCTAA
20186899 GCATACA-GAGTTCATTCCCAGTCTAA
1 GCATACAGGAGTTCATTCCCAGTCTAA
20186925 G
1 G
20186926 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACAGGAGTTCATTCCCAGTCTAA
Found at i:20187271 original size:515 final size:512
Alignment explanation
Indices: 20186496--20187506 Score: 1370
Period size: 515 Copynumber: 2.0 Consensus size: 512
20186486 CCCGACTTAC
* * *
20186496 GCATTCTGCCTCTTCGGTCGACTGAGCACCCGCATGCCCCTTTCGTGGGTTGGCTTAGGCATAGG
1 GCATTCTACCTCTCCGGTCGACTGAGCACCCGCACGCCCCTTTCGTGGGTTGGCTTAGGCATAGG
*** *
20186561 GAGTTCATTCCATGTCTAAGCCTCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCACTC
66 GAGTTCATTCCATGTCTAAGCCT-CAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGCACGC
* * * *
20186626 AGAGGGGGACCGGGCCGATCCTCGGCTCATGCATTATGCCTCTCCAGTCGGCTCAGCATCCGCAC
130 AGAGGGGGACCGGGCCGATCCTCAGCTCA-GCATTATGCCTCTCCAGCCAGCTCAGCACCCGCAC
* * **
20186691 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGA
194 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
* *
20186756 GGGTTGCGACAGTAAGAT-TAATAGCACGCAGGGGGGATCGGGTCGATCC-CTGACTTACGCATT
259 GGGTTACGACAGTAAGATCT-ATAGCACACAGGGGGGATCGGGTCGATCCTC-GACTTACGCATT
* * * *
20186819 ATGCCTCTCCGATCGGCTGAGTGCCCGCATGCTCATTTTGTGGGATGGCTTAGGCATACAGGAGT
322 ATGCCTCTACGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGATGGCTTAGGCATAC-GGAGT
* * * *
20186884 TCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGTG
386 TCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTATG
*
20186949 GCAGCAGGACAAGCAACAGGATCGACAGCACGTAGAGGGGGATCGGGTCGATCCTGGGCTTGT
451 GCAGCAGGACAAGCAACAGGATCGACAGCACGCAG-GGGGGATCGGGTCGATCCTGGGCTTGT
* *
20187012 GCATTCTACCTCTCCGGTCGACTGAGCACTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
1 GCATTCTACCTCTCCGGTCGACTGAGCACCCGCACGCCCCTTTCGTGGGTTGGCTTAGGCATAGG
* * * * *
20187077 GAGTTCATTCCTTGTCTAATTCCT-AGCCGGTCCGAGGGTTGTTGCAGCAAGACCGGTAGCACGC
66 GAGTTCATTCCATGTCTAA-GCCTCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGCACGC
* *
20187141 AGAGGGGGACCGGGCTGAT-CTGCAGCTTGCA-CATTATGCCTCT-CTGACCAGCTCAGCACCCG
130 AGAGGGGGACCGGGCCGATCCT-CAGC-T-CAGCATTATGCCTCTCCAG-CCAGCTCAGCACCCG
* * * * *
20187203 GACGCTCATTTCATGGGTTGAGTTAGGCATAC-GATGTTCATTCCCCGTCTGAGATCGGACCAGA
191 CACGCTCATTTCATGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCAGA
** * *
20187267 CTGAGGGTTACGGTAGTAGGATCTATAGCACACAGGGGGGATCGGGTCGATCCTCGGCTTACGCA
255 CTGAGGGTTACGACAGTAAGATCTATAGCACACAGGGGGGATCGGGTCGATCCTCGACTTACGCA
* * * * *
20187332 TTTTGCCTCTACGATCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
320 TTATGCCTCTACGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGATGGCTTAGGCATACGGAG
* *
20187397 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTAT
385 TTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTAT
* * * *
20187462 GGCAGTAGGACCAGCAATAGGATCGATAGCACGCAGGGGGGATCG
450 GGCAGCAGGACAAGCAACAGGATCGACAGCACGCAGGGGGGATCG
20187507 ATAGCCCGCA
Statistics
Matches: 432, Mismatches: 55, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
513 9 0.02
514 100 0.23
515 237 0.55
516 81 0.19
517 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (512 bp):
GCATTCTACCTCTCCGGTCGACTGAGCACCCGCACGCCCCTTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCTCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGCACGCA
GAGGGGGACCGGGCCGATCCTCAGCTCAGCATTATGCCTCTCCAGCCAGCTCAGCACCCGCACGC
TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
GTTACGACAGTAAGATCTATAGCACACAGGGGGGATCGGGTCGATCCTCGACTTACGCATTATGC
CTCTACGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGATGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTATGGCAGC
AGGACAAGCAACAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTGGGCTTGT
Found at i:20187437 original size:26 final size:26
Alignment explanation
Indices: 20187387--20187439 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20187377 GTTGGCTTAG
*
20187387 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20187413 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20187439 G
1 G
20187440 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20188276 original size:26 final size:26
Alignment explanation
Indices: 20188225--20188277 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20188215 GTTGGCTTAG
*
20188225 GCATACTGAGTTCATTCCATGTCTAA
1 GCATACTGAGTTCATTCCATGCCTAA
20188251 GCATAC-GAAGTTCATTCC-TAGCCTAA
1 GCATACTG-AGTTCATTCCAT-GCCTAA
20188277 G
1 G
20188278 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACTGAGTTCATTCCATGCCTAA
Found at i:20191363 original size:158 final size:157
Alignment explanation
Indices: 20190831--20191390 Score: 529
Period size: 158 Copynumber: 3.5 Consensus size: 157
20190821 CCACGACTTG
* * * *
20190831 CGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * ** * * **
20190896 GAAGTTCATTCGCA-ATCTAAGATTGGACCAGACCGAGGGTTGCGGCAACAGGATCGGCAGCACG
66 GGAGTTCATTC-CATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACG
* * *
20190960 CAGGGGGGACCGGGCAATCCCCGACATGA
130 CAGGGGGGACCGGGCAATCCCTGGC-TTA
* * * *
20190989 -GCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA-
1 CGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * ** * * * * * *
20191052 GTTAGTTCATTCTATGTCTAAGCGCCAG-TCAAACCAAGGGTTGTGGCAGCGGGACCGATAACAC
66 G-GAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCAC
* * *
20191116 GCAGAGGTGGACCAGGTCGATCCCTGGCTTA
129 GCAG-GGGGGACC-GGGCAATCCCTGGCTTA
* * * * * ** *
20191147 CGTATTATGCCTCTCCGATCGGCTCAGTACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAC
1 CGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * * *
20191212 GGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGAGTTGTAGG-AGCAAGATCGATAGCAT
66 GGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGT-GGCAGCAGGATCGATAGCAC
* *
20191275 GTAGGGGGGACCGGGCCAATCCTTGGCTTA
129 GCAGGGGGGACCGGG-CAATCCCTGGCTTA
* * * * *
20191305 CGCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCATGCTTATTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
*
20191370 AGAGTTCATTCCATGTCTAAG
66 GGAGTTCATTCCATGTCTAAG
20191391 CATACGGAGT
Statistics
Matches: 318, Mismatches: 72, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 104 0.33
158 105 0.33
159 104 0.33
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
CGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGC
AGGGGGGACCGGGCAATCCCTGGCTTA
Found at i:20191393 original size:26 final size:26
Alignment explanation
Indices: 20191364--20191416 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20191354 GTTGGCTTAG
20191364 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20191390 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20191416 G
1 G
20191417 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20192950 original size:159 final size:157
Alignment explanation
Indices: 20192649--20193157 Score: 458
Period size: 159 Copynumber: 3.2 Consensus size: 157
20192639 CCCAATCTAA
* * * * ** * *
20192649 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGATC-GAACGAGGGTTATGGCAACAGGACCGA
* * * * *
20192712 TAGCACGCAAAGGGGACCGGGCCGATCC-CTGGCTTGCGCATTCTACCTCTCCGGTCGGCTAAGC
64 CAGCATGCAGAGGGGACCGGGCCGATCCTC-GGCTTGCGCATTCTACCTCTCTGATCGGCTAA-C
* * * *
20192776 GCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
127 GCCCGCACACTCGTTTCATGGGTTGGCTTAG
* * * *
20192807 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TC-AGACTGAGGGTTATGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGA-AC-GAGGGTTATGGCAACAGGACCGA
* * * * *
20192870 CAGCATGCAGAGGGAGACCGGGCCGATCCTCGGCTTACGCATTCTACTTTTTTGATCGGCTCAAT
64 CAGCATGCAGAGGG-GACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGATCGGCT-AAC
* *
20192935 GCCCGCACACTCGTTTCTTGGGTTGACTTAG
127 GCCCGCACACTCGTTTCATGGGTTGGCTTAG
* * * * *
20192966 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGATCGTAACGAGGGTTGTGGCAACAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCG-AACGAGGGTTATGGCAACAGGACCGA
* * ** * *
20193029 CAGCATGCAGGCGGGGACCAGGCATATCCTCGGCTTGTGCATTCTACCTCTCT-AGTCGGCTGAG
64 CAGCATGCA-GAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGA-TCGGCT-AA
20193093 CGCCCGCACGCATGCTCGTTTCATGGGTTGGCTTAG
126 CGCCCGCA--CA--CTCGTTTCATGGGTTGGCTTAG
20193129 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
20193158 TACGAAGTTC
Statistics
Matches: 283, Mismatches: 49, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 57 0.20
159 163 0.58
160 12 0.04
161 3 0.01
162 3 0.01
163 42 0.15
164 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACGAGGGTTATGGCAACAGGACCGACA
GCATGCAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGATCGGCTAACGCCC
GCACACTCGTTTCATGGGTTGGCTTAG
Found at i:20193180 original size:26 final size:26
Alignment explanation
Indices: 20193129--20193181 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20193119 GTTGGCTTAG
* *
20193129 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGACTAA
20193155 GCATACGAAGTTCATTCCCA-GACTAA
1 GCATACGAAGTTCATT-CCATGACTAA
20193181 G
1 G
20193182 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGACTAA
Found at i:20193539 original size:26 final size:26
Alignment explanation
Indices: 20193509--20193561 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20193499 GTTGACTTAG
20193509 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
20193535 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20193561 G
1 G
20193562 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20193996 original size:159 final size:164
Alignment explanation
Indices: 20193830--20194223 Score: 392
Period size: 171 Copynumber: 2.4 Consensus size: 164
20193820 CGGTGGGCTC
* *
20193830 AACGCCCGAACGCTCGTTTCATGGGTTGCCTTATGCATACGGAGTTCATTCCTAGTCTAAGATC-
1 AACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCT
* *
20193894 AGATCAGACCGAGGGTTGTGGCAGCAGGATAGACAGT-A-CG-T-A-AG-GGGGGATCGGGCTGA
65 AGAT-AGACCGAGGGTTGTGGCAGCAGGACAGACAGTGATCGATAACAGAAGGGGATCGGGCTGA
* * *
20193953 TCCCCAACTTACGCATTTTGCCTCTCCGACCGATTGG
129 TCCCCAACTTACGCATTATGCCTCCCCGACCGACT-G
* * * ** * * **
20193990 GA-GCCCGCACGTTCGTTTGGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCT
1 AACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGATCT
* * * *
20194054 AGCTGGACCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGATAGCAATCAGAAGGGGATCGG
65 AGATAGACCGAGGGTTGTGGCAGCAGGACAGACAGT--GATCGAT---AA-CAGAAGGGGATCGG
* * *
20194119 GCTGATCCCCAGCTTGCGCATTATGCCTCCCCGACCGGCTG
124 GCTGATCCCCAACTTACGCATTATGCCTCCCCGACCGACTG
* *
20194160 AACGCCC-ACACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATC
1 AACGCCCGA-ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGATC
20194224 GGACCGGACT
Statistics
Matches: 184, Mismatches: 33, Indels: 23
0.77 0.14 0.10
Matches are distributed among these distances:
158 1 0.01
159 78 0.42
160 4 0.02
162 1 0.01
163 2 0.01
164 1 0.01
168 1 0.01
170 4 0.02
171 89 0.48
172 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (164 bp):
AACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCTA
GATAGACCGAGGGTTGTGGCAGCAGGACAGACAGTGATCGATAACAGAAGGGGATCGGGCTGATC
CCCAACTTACGCATTATGCCTCCCCGACCGACTG
Found at i:20194390 original size:26 final size:26
Alignment explanation
Indices: 20194354--20194404 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20194344 TTGGCTTAGG
20194354 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
20194380 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
20194405 GATCCAATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:20194585 original size:26 final size:26
Alignment explanation
Indices: 20194549--20194616 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
20194539 GTTGGCTTAG
20194549 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
* *
20194575 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
20194601 GCATACAGAGTTCATT
1 GCATACAGAGTTCATT
20194617 ACCAGTGTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:20194627 original size:26 final size:25
Alignment explanation
Indices: 20194549--20194627 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
20194539 GTTGGCTTAG
20194549 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
* *
20194575 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCC-AGTCTAA
*
20194601 GCATACAGAGTTCATTACCAGTGTAA
1 GCATACAGAGTTCATT-CCAGTCTAA
20194627 G
1 G
20194628 ATTTTGAGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 44 0.96
27 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:20195335 original size:26 final size:26
Alignment explanation
Indices: 20195301--20195351 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20195291 TGACTTAGGC
*
20195301 ATACGGAGTTCA-TCCGCAGTCTAAGT
1 ATACAGAGTTCATTCC-CAGTCTAAGT
20195327 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
20195352 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:20195839 original size:26 final size:26
Alignment explanation
Indices: 20195803--20195855 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20195793 GTTGGCTTAG
20195803 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20195829 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20195855 G
1 G
20195856 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20196501 original size:159 final size:158
Alignment explanation
Indices: 20196317--20196696 Score: 406
Period size: 159 Copynumber: 2.4 Consensus size: 158
20196307 TGGCCAGCTG
* * *
20196317 AGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * * * *
20196382 AATAGAACTGAAGGTTATGGCAACGGGATCGGTAGCACACAGAGGG-GGA-CGGGGCTGATCCTC
66 AACAGAAC-GAAGGTTACGGCAACAGGATCGATAGCACACAG-GGGAGGATC-GGGCCGATCCCC
*
20196445 GGCTTACACATTATGCCTCTTCGACCGGCTC
128 GGCTTACACATTATGCCTCTCCGACCGGCTC
* * * * *
20196476 AGCACCCGTACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATC
1 AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CC
** * * * * * *
20196540 GGACCAGATCGAGGGTTGCGGCAGCAGGATCGATAGCACATAGGGGAGGATCGGGCCGATCCCCG
64 CCAACAGAACGAAGGTTACGGCAACAGGATCGATAGCACACAGGGGAGGATCGGGCCGATCCCCG
* * * * * *
20196605 GCTTGCGCATTCTGCCTCTCCGGCCGGTTG
129 GCTTACACATTATGCCTCTCCGACCGGCTC
* * *
20196635 AGCGCCCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20196697 ATACGGAGTT
Statistics
Matches: 179, Mismatches: 37, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
158 6 0.03
159 163 0.91
160 10 0.06
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AACAGAACGAAGGTTACGGCAACAGGATCGATAGCACACAGGGGAGGATCGGGCCGATCCCCGGC
TTACACATTATGCCTCTCCGACCGGCTC
Found at i:20196705 original size:26 final size:26
Alignment explanation
Indices: 20196669--20196721 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20196659 GTTGGCTTAG
20196669 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20196695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20196721 G
1 G
20196722 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20197430 original size:26 final size:26
Alignment explanation
Indices: 20197401--20197453 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20197391 GTTGACTTAC
20197401 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
20197427 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
20197453 G
1 G
20197454 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:20197728 original size:159 final size:158
Alignment explanation
Indices: 20197510--20197933 Score: 388
Period size: 159 Copynumber: 2.7 Consensus size: 158
20197500 AGGGGATCGA
* * * * * * * *
20197510 GCCGATCCTCGGCTTGCGGATTCTGCCTCTTCAGCCAGCTGAGCGCCCGCACACCCGTTTTGTGG
1 GCCGATCCCCGGCTTACGCATTCTGCCTTTTCAGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGG
* * * **
20197575 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCCAACCGGA-TCGAGGGCTGTGGCAG
66 GTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCGCAAACCGGACT-GAGGGCTACGGCAG
* *
20197639 CGAGATCGACAACACATAGAGGGGGACCAG
130 CAAGATCGACAACACATAG-GGGGAACCAG
* * * * ** *
20197669 GCCGATCCCCGGCTTACGCATTATGCCTTTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCATTG
1 GCCGATCCCCGGCTTACGCATTCTGCCTTTTCAGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGG
* * ** * *
20197734 GTTGAATTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCAAACCGGACTGAGGGTTACGGCCG
66 GTTGGATTAGGCATACGGAGTTCATT-CCATGTCTAAGCGCAAACCGGACTGAGGGCTACGGCAG
* * *
20197798 CAAGATCGACAGCACGTAGGGGGAACCGG
130 CAAGATCGACAACACATAGGGGGAACCAG
* * * * *
20197827 GCTGATCCCCGTCTTACGCATTCTACC-TTTCCGTCTGGTTGAGCGCCCGCACG-TACGCTCATT
1 GCCGATCCCCGGCTTACGCATTCTGCCTTTTCAGTC-GGCTGAGCGCCCGCACGCT-CG-T--TT
* * *
20197890 TCGTGGGTTGGTTTAGGCATACGGATTTCATTCCATGTGTAAGC
61 T-GTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGC
20197934 ATACGGAGTT
Statistics
Matches: 208, Mismatches: 48, Indels: 15
0.77 0.18 0.06
Matches are distributed among these distances:
157 8 0.04
158 47 0.23
159 114 0.55
160 4 0.02
161 5 0.02
162 30 0.14
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GCCGATCCCCGGCTTACGCATTCTGCCTTTTCAGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGG
GTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCGCAAACCGGACTGAGGGCTACGGCAGC
AAGATCGACAACACATAGGGGGAACCAG
Found at i:20197958 original size:26 final size:26
Alignment explanation
Indices: 20197906--20197958 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20197896 GTTGGTTTAG
* *
20197906 GCATACGGATTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20197932 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
20197958 G
1 G
20197959 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20198696 original size:159 final size:157
Alignment explanation
Indices: 20198300--20199137 Score: 499
Period size: 159 Copynumber: 5.4 Consensus size: 157
20198290 CCCCGTCTAA
** * * * **
20198300 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * ** * * * * * * * **
20198365 GCACGCAGGGGGGATCGAACCGATCCCCGACTTTCGCATTCTACCTCTCTGGTC-GGTTGAGCGC
66 GCACGAAGGGGGGACCGGGCCAATCCCCGACTTACGCATTATGCCTCTC--GACAGGCTCAATGC
*
20198429 CCGCACGCCCGTTTCATGGGTT-AGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGA-CTTAG
* ** * * ** * * * ** * **
20198458 GCATAGGGAGTTCATTCCTTGTGTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGTAGCAGGATCGAC
** * * * * *
20198522 ATTAGGTAGAGGGGGACCGGGCCGATCCTCGACTTACGCATTATGCCTCTCTGATAGGCTCAATG
65 AGCACGAAG-GGGGGACCGGGCCAATCCCCGACTTACGCATTATGCCTCTC-GACAGGCTCAATG
* * *
20198587 CCAGTACACTCGTTTCATGGGTTGACTTAG
128 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
20198617 GCATACAGAGTCCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
20198682 GCACGTAGGCGGGGATCAGGTCAATCCCCGACTTACGCATTCTGCCTCTC--CAGG----A----
66 GCACGAAGG-GGGGACCGGGCCAATCCCCGACTTACGCATTATGCCTCTCGACAGGCTCAATGCC
* *
20198737 CG---TC-CGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * * * *
20198761 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCTAGCCGGATCGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * * * * * * *** **
20198824 CAGCACGCAGAGGGGGACTGAGCCAATCCCTGGCTTGCGTATTATGCCTTATCGGTTGGCTCAGC
64 CAGCACGAAG-GGGGGACCGGGCCAATCCCCGACTTACGCATTATGCC-TCTCGACAGGCTCAAT
*
20198889 GCCCGCACGCTCGTTTCATGGGTTGACTTAC
127 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
20198920 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * ** * * * * *
20198985 GCACCCAAGGGGGGATCGGGCCGATCCCCAACTTGTGCATTCTGCCTCTCCAGCCGGCTGAGTGC
66 GCA-CGAAGGGGGGACCGGGCCAATCCCCGACTTACGCATTATGCCTCTCGA-CAGGCTCAATGC
* * * *
20199050 CCGCACGCTCGTTTCGTCGATTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
20199079 ACATACGGAGTTCATTCCCAGTCTAAGATCGGTCTGGACCGAGGGTTACGGTAGTAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGA
20199138 CAAGCAGCAG
Statistics
Matches: 515, Mismatches: 137, Indels: 55
0.73 0.19 0.08
Matches are distributed among these distances:
143 5 0.01
144 99 0.19
145 5 0.01
147 2 0.00
148 1 0.00
152 1 0.00
155 2 0.00
156 3 0.01
157 2 0.00
158 62 0.12
159 322 0.63
160 11 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGAAGGGGGGACCGGGCCAATCCCCGACTTACGCATTATGCCTCTCGACAGGCTCAATGCCC
GCACGCTCGTTTCATGGGTTGACTTAG
Found at i:20198872 original size:144 final size:144
Alignment explanation
Indices: 20198597--20199037 Score: 318
Period size: 144 Copynumber: 3.0 Consensus size: 144
20198587 CCAGTACACT
* *
20198597 CGTTTCATGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
1 CGTTTCATGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAAGACCAGACCGGACCGAGGG
* * * *
20198662 TTGCGATAGCAGGATCGACAGCACGTAGGCGGGGATCAGGTCAATCCCCGACTTACGCATTCTGC
66 TTGCGATAGCAGGACCGACAGCACGCAGGCGGGGATCAGGCCAATCCCCGACTTACGCATTATGC
20198727 CTCTCCAGGACGTC
131 CTCTCCAGGACGTC
* ** * * *
20198741 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGATCGAG
1 CGTTTCATGGGTTGACTTAGGCATACAGAGTCCATTCCCA-GTCTAAGACC-AGACCGGACCGAG
* * * * * * * *
20198804 GGTTGTGGTAGCGGGACCGACAGCACGCAGAG-GGGGA-CTGAGCCAATCCCTGGCTTGCGTATT
64 GGTTGCGATAGCAGGACCGACAGCACGCAG-GCGGGGATCAG-GCCAATCCCCGACTTACGCATT
20198867 ATGCCTTATCGGTTGGCTCAGCGCCCGCACG-C
127 ATGCC---TC---T--C-CA--G---G-ACGTC
* * * * * *
20198899 TCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAG
1 -CGTTTCATGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAAGACCAGACCGGACCGAGG
* * * * * * * * ** *
20198964 GTTGCGGTAGCAAGATCGATAGCACCCAAGG-GGGGATCGGGCCGATCCCCAACTTGTGCATTCT
65 GTTGCGATAGCAGGACCGACAGCACGC-AGGCGGGGATCAGGCCAATCCCCGACTTACGCATTAT
20199028 GCCTCTCCAG
129 GCCTCTCCAG
20199038 CCGGCTGAGT
Statistics
Matches: 231, Mismatches: 42, Indels: 44
0.73 0.13 0.14
Matches are distributed among these distances:
143 5 0.02
144 100 0.43
145 2 0.01
147 2 0.01
148 1 0.00
150 3 0.01
151 1 0.00
152 1 0.00
153 3 0.01
155 1 0.00
156 2 0.01
158 4 0.02
159 99 0.43
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (144 bp):
CGTTTCATGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAAGACCAGACCGGACCGAGGG
TTGCGATAGCAGGACCGACAGCACGCAGGCGGGGATCAGGCCAATCCCCGACTTACGCATTATGC
CTCTCCAGGACGTC
Found at i:20199001 original size:303 final size:303
Alignment explanation
Indices: 20198437--20199037 Score: 749
Period size: 303 Copynumber: 2.0 Consensus size: 303
20198427 GCCCGCACGC
* * *
20198437 CCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCTTGTGTAAGCCCCAGTCGGACCGAGG
1 CCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
* ** ** * * * *
20198502 GTTGTGGCAGTGGGACCGGTATTAGGTAGAGGGGGACCGGGCCGATCCTCGACTTACGCATTATG
66 GTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCTCGACTTACGCATTATG
* * * *
20198567 CCTCTCTGATAGGCTCAATGCCAGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTCCAT
131 CCTATCTGATAGGCTCAACGCCAGCACACTCGTTTCATGGGTTGACTTACGCATACAGAGTCCAT
* * * * **
20198632 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGGCGGGGA
196 TCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGATAGCAAGATCGACAGCACCAAGGCGGGGA
* *
20198697 TCAGGTCAATCCCCGACTTACGCATTCTGCCTCTCCAGGACGT
261 TCAGGCCAATCCCCAACTTACGCATTCTGCCTCTCCAGGACGT
* * *
20198740 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATCGAGG
1 CCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
* * * * *
20198805 GTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACTGAGCCAATCC-CTGGCTTGCGTATTAT
66 GTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCTC-GACTTACGCATTAT
* * * * * * *
20198869 GCCTTATC-GGTTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTC
130 GCC-TATCTGATAGGCTCAACGCCAGCACACTCGTTTCATGGGTTGACTTACGCATACAGAGTCC
* *
20198933 ATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAGCAAGATCGATAGCACCCAAGG-GG
194 ATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGATAGCAAGATCGACAGCA-CCAAGGCGG
* * **
20198997 GGATCGGGCCGATCCCCAACTTGTGCATTCTGCCTCTCCAG
258 GGATCAGGCCAATCCCCAACTTACGCATTCTGCCTCTCCAG
20199038 CCGGCTGAGT
Statistics
Matches: 250, Mismatches: 45, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
302 1 0.00
303 242 0.97
304 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (303 bp):
CCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
GTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCTCGACTTACGCATTATG
CCTATCTGATAGGCTCAACGCCAGCACACTCGTTTCATGGGTTGACTTACGCATACAGAGTCCAT
TCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGATAGCAAGATCGACAGCACCAAGGCGGGGA
TCAGGCCAATCCCCAACTTACGCATTCTGCCTCTCCAGGACGT
Found at i:20199439 original size:26 final size:26
Alignment explanation
Indices: 20199408--20199458 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20199398 TTTGACTTAG
20199408 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
20199434 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
20199459 GGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20199776 original size:343 final size:341
Alignment explanation
Indices: 20199142--20200120 Score: 1246
Period size: 343 Copynumber: 2.9 Consensus size: 341
20199132 GTAGGACAAG
* * *
20199142 CAGCAGGATCTACAGCACGCAGGGGGGACC-AGGTCGATCCTTGGCTTGCGCATTCTGCCTCTTC
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGA-GTCGATCCTCGGCTTGCGCATTCTGCCTCTCC
* * *
20199206 GGCGGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGT
65 GACAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * *
20199271 ATAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGATCGACAAAAAGTA-ACGGGGGACCGGAC
130 CTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGATCGACAACAAGTAGA-GGGGGACCGGAC
* * * * * * * *
20199335 TGATCCCCGGCTTGCGCATTATGCCTCTCAGGCCGGCTGAGCACCCGCATACTCGTTTTGTGGTT
194 CGATCCCC-GCTTGCGCATTATGCCTCTCTGG-CGGCTCAACGCCCGCACACTCGTTTCGTGGGT
* * **
20199400 TGACTTAGGCATACGAAGTTCA-TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATC
257 TGACTTAGGCATACGAAGTTCATTCCC-AGTCTAAGCATACGAAGTGCATTCCCAGTCTAACATC
* *
20199464 GGATCGGACCGAGGGTTGCGA
321 GGACCGGACCGAGGGTTACGA
* * *
20199485 CAGCAGGATCGACAACACGTAGGGGGGACCGAGTCGATCGTCGGCTTGCGCATTCTGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCG
* * * * *
20199550 ACAGGTTGAGCGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGACATAGTGAGTTCGTTCCATGT
66 ACAGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * * * **
20199614 CTAAGCCCCAGCCGGACCAAGGGTTGTGGCAATGGGATCGACAGCATGCAGAAAGGGACCGGACC
130 CTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGATCGACAACAAGTAGAGGGGGACCGGACC
* * * * *
20199679 GATCCCCAGTTTACGCGTTATGCCTCTCTGGTCGACTCAACGCCCGCACACTTGTTTCGTGGGTT
195 GATCCCC-GCTTGCGCATTATGCCTCTCTGG-CGGCTCAACGCCCGCACACTCGTTTCGTGGGTT
*
20199744 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGAAGTGCATTCCCAGTCTAACATCGG
258 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTGCATTCCCAGTCTAACATCGG
*
20199809 ACCGGATCGAGGGTTACGA
323 ACCGGACCGAGGGTTACGA
* * ** * * * *
20199828 TAGCAGGATCGACAGCACGCAGGAGGGATTGGGCCGATCCTCGGCTTGCACATTCTTCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCG
* * *
20199893 ACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 ACAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * * * *
20199958 TAAGCCCTAGTCGGACTGAGGGTTGTGGCAGTGGGATCGGCAACAGGTAGAGGGGGATCGGATCG
131 TAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGATCGACAACAAGTAGAGGGGGACCGGACCG
*
20200023 ATCCCCGACTTGCGCATTATGCCTCTCTGGCAGGTTCAACGCCCGCACACTCGTTTCGTGGGTTG
196 ATCCCCG-CTTGCGCATTATGCCTCTCTGGC-GGCTCAACGCCCGCACACTCGTTTCGTGGGTTG
* *
20200088 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
259 ACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
20200121 AATGAACCAG
Statistics
Matches: 541, Mismatches: 88, Indels: 14
0.84 0.14 0.02
Matches are distributed among these distances:
342 3 0.01
343 531 0.98
344 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (341 bp):
CAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCG
ACAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGATCGACAACAAGTAGAGGGGGACCGGACCG
ATCCCCGCTTGCGCATTATGCCTCTCTGGCGGCTCAACGCCCGCACACTCGTTTCGTGGGTTGAC
TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTGCATTCCCAGTCTAACATCGGACC
GGACCGAGGGTTACGA
Found at i:20199787 original size:26 final size:26
Alignment explanation
Indices: 20199751--20199802 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20199741 GTTGACTTAG
*
20199751 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTGCATTCCCAGTCTAA
*
20199777 GCATATGAAGTGCATTCCCAGTCTAA
1 GCATACGAAGTGCATTCCCAGTCTAA
20199803 CATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTGCATTCCCAGTCTAA
Found at i:20200251 original size:158 final size:159
Alignment explanation
Indices: 20199899--20200280 Score: 468
Period size: 158 Copynumber: 2.4 Consensus size: 159
20199889 TCCGACCGAC
* *
20199899 TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* ** * ** ** * *
20199964 CTAGTCGGACTGAGGGTTGTGGCAGTGGGATCGGCAACAGGTAGAGGGGGATCGGATCGATCCCC
66 ATAACCAGACTGAGGGTTACGGCAGCAGGATCGACAACACGTAGAGGGGGATCGGATCGATCCCC
*
20200029 GACTTGCGCATTATGCCTCTCTGGCAGGT
131 GACTTACGCATTATGCCTCTCTGGCAGGT
* * * * *
20200058 TCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-
1 TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
* *
20200121 AATGAACCAGACTGAGGGTTACGGCAGCAGGATCGATAGCACGTA-AGGGGGATCCGG-TCGATC
65 AAT-AACCAGACTGAGGGTTACGGCAGCAGGATCGACAACACGTAGAGGGGGAT-CGGATCGATC
* *
20200184 CCCGTCTTACGCATTCTGCCTCTCTGGTC-GGT
128 CCCGACTTACGCATTATGCCTCTCTGG-CAGGT
* * *
20200216 TGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCGATGTCTAAGCA
1 TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20200281 TACGGAGTTC
Statistics
Matches: 187, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
158 96 0.51
159 91 0.49
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
ATAACCAGACTGAGGGTTACGGCAGCAGGATCGACAACACGTAGAGGGGGATCGGATCGATCCCC
GACTTACGCATTATGCCTCTCTGGCAGGT
Found at i:20200656 original size:26 final size:26
Alignment explanation
Indices: 20200620--20200672 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20200610 GTTGAGTTAG
20200620 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
20200646 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20200672 G
1 G
20200673 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20200988 original size:26 final size:26
Alignment explanation
Indices: 20200958--20201010 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20200948 GTTGGCTTAG
20200958 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20200984 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20201010 G
1 G
20201011 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20201029 original size:338 final size:343
Alignment explanation
Indices: 20200391--20201012 Score: 796
Period size: 338 Copynumber: 1.8 Consensus size: 343
20200381 CTCAGCTTTT
* *
20200391 GCATTCTGCCTCTCCGGCTGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGGCAGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACG
*
20200456 GAGTTCATTCCACGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGAT
66 GAGTTCATTCCACGTCTAAGCCCCAGCCGAACCGAGGGTTGTAGCAGCAGGACCGGCAGT--GAT
* * * * * * * *
20200521 CGACAGCATGCAGAGAGGGATCGGGCCGATCCCTGGGTGGCACATTATGCCTCTCTGGCCGGCTG
129 ----AGCA--CAGAGAGGGACCGAGCCGATCCCTGGCTGACACATTACGCCTCTCTAGCCGACTC
* * *
20200586 AGCGCCCGCACGCTCATTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATA
188 AGCACCCGCACGCTCATTTCATGGGTTGAGTTAGGCATACGGAGTTCATCCATAGTCTAAGCATA
20200651 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCGCAGTAGTAGGATCGGTAGCACG
253 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCGCAGTAGTAGGATCGGTAGCACG
20200716 CTGGGGGGATTGAGTGCCCGACTTAC
318 CTGGGGGGATTGAGTGCCCGACTTAC
* *
20200742 GCATTCTGCCTCTCCGGTCAG-TTGAG-AGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATA
1 GCATTCTGCCTCTCCGG-CAGACTGAGCA-CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
* * * * * **
20200805 GGGAGTTCATTCCATGTCTATGTCCCAGCC-AGACGGAGGGTTGTAGCAGCAGGATTGGCAGT-A
64 CGGAGTTCATTCCACGTCTAAGCCCCAGCCGA-ACCGAGGGTTGTAGCAGCAGGACCGGCAGTGA
* * * *
20200868 T-GCA-AG-G-GGGACCGAGCCGATCCCTTGCTTACGCATTACGCCTCTCTAGTCGACTCAGCAC
128 TAGCACAGAGAGGGACCGAGCCGATCCCTGGCTGACACATTACGCCTCTCTAGCCGACTCAGCAC
* *
20200929 CCGCACGCTCGTTTCATGGGTTG-GCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATATGG
193 CCGCACGCTCATTTCATGGGTTGAG-TTAGGCATACGGAGTTCA-TCCATAGTCTAAGCATACGG
20200992 AGTTCATTCCCAGTCTAAGAT
256 AGTTCATTCCCAGTCTAAGAT
20201013 TGGATCGGAC
Statistics
Matches: 237, Mismatches: 29, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
337 1 0.00
338 114 0.48
339 5 0.02
340 2 0.01
343 3 0.01
348 2 0.01
350 2 0.01
351 106 0.45
352 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
GCATTCTGCCTCTCCGGCAGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCACGTCTAAGCCCCAGCCGAACCGAGGGTTGTAGCAGCAGGACCGGCAGTGATAG
CACAGAGAGGGACCGAGCCGATCCCTGGCTGACACATTACGCCTCTCTAGCCGACTCAGCACCCG
CACGCTCATTTCATGGGTTGAGTTAGGCATACGGAGTTCATCCATAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCGCAGTAGTAGGATCGGTAGCACGCTGGGGGG
ATTGAGTGCCCGACTTAC
Found at i:20201842 original size:158 final size:158
Alignment explanation
Indices: 20201359--20201866 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 158
20201349 TTCATCCCCA
* * * * * *
20201359 GCCTAAGG-ATACAGAGTTCATTCCCAGTTTAAGATCGGACTGGATTGAGGGTTGCGGTAACAGG
1 GCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAACAGG
* * * * *
20201423 ATCGACAGCACG-TAG-GGGACTAGGCTGATCCTTGATTTGTGCATTCTGCCTCTCCT-GCCGGC
66 ATCGACAGCACGCGAGAGGGACTGGGCTGATCCTCGACTTGCGCATTCTGCCTCT-CTGGCCGGC
*
20201485 TGAGCACCCGCACGCCTATTTCATGGGTT
130 TGAGCACCCGCACGCTTATTTCATGGGTT
* * ** * ** * *
20201514 GGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACTGAGGGTTGTTGCAGCG
1 GCCTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACTGAGGGTTGCAGCAACA
* * * * **
20201577 GGACCTG-CAGCATGCAGAGAGGGACTGGGCTGATCCTCGGCTTGCGCATTATGCCTCT-TCGAT
64 GGATC-GACAGCACGC-GAGAGGGACTGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCT-GGC
* * * **
20201640 CGGCTCAGCACCCACACGCTCATTTTGTGGGTT
126 CGGCTGAGCACCCGCACGCTTATTTCATGGGTT
* * *
20201673 GACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCACCAGG
1 GCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAACAGG
* * * * * *
20201738 ATCGATAGCACGCGGGAGGGACCGGG-TCGATCCTCGACTTACGGATTCTGCCTCTCTGGCCTGC
66 ATCGACAGCACGCGAGAGGGACTGGGCT-GATCCTCGACTTGCGCATTCTGCCTCTCTGGCCGGC
*
20201802 TGAGCACCCGTACGCTTATTTCATGGGTT
130 TGAGCACCCGCACGCTTATTTCATGGGTT
*
20201831 GCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
20201867 TTTGAGCCAC
Statistics
Matches: 277, Mismatches: 62, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
155 11 0.04
156 45 0.16
157 3 0.01
158 97 0.35
159 116 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
GCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAACAGG
ATCGACAGCACGCGAGAGGGACTGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCTGGCCGGCT
GAGCACCCGCACGCTTATTTCATGGGTT
Found at i:20202581 original size:26 final size:26
Alignment explanation
Indices: 20202533--20202585 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20202523 GTTGACTTAG
*
20202533 GCATACGGAGTTCATCTCTAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
*
20202559 GCATATGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
20202585 G
1 G
20202586 ATTGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:20203062 original size:26 final size:26
Alignment explanation
Indices: 20203033--20203085 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20203023 GTTGGCTTAG
*
20203033 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20203059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20203085 G
1 G
20203086 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20203640 original size:26 final size:26
Alignment explanation
Indices: 20203611--20203664 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
20203601 GTTGACTTAG
20203611 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20203637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20203663 GC
1 GC
20203665 GCCCGCACGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20204065 original size:26 final size:26
Alignment explanation
Indices: 20204013--20204065 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20204003 GTTAGCTTAG
*
20204013 GCATACGAAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
20204039 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
20204065 G
1 G
20204066 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:20205277 original size:26 final size:26
Alignment explanation
Indices: 20205247--20205297 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20205237 GTTGACTTAG
*
20205247 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAATCTAT
*
20205273 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
20205298 AGATTTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAT
Found at i:20211936 original size:26 final size:26
Alignment explanation
Indices: 20211899--20211951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20211889 GTTGACTTAG
*
20211899 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
* *
20211925 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
20211951 G
1 G
20211952 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAATCTAA
Found at i:20212617 original size:170 final size:171
Alignment explanation
Indices: 20212386--20212698 Score: 391
Period size: 170 Copynumber: 1.8 Consensus size: 171
20212376 GCTTCATTTC
* *
20212386 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGG
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGACCAGACCGGACCAAGGGTTGCGG
* * * *
20212451 CAGCAGGACTAGCAGTAG-GATAGGCAGCACGCAG-GGGGGATCAGACTGATCCCCGGCTTGCGC
66 CAACAGGACCAGCAGT-GTGATAGACAGCACACAGAGGGGGATCAGACTGATCCCCGGCTTGCGC
*
20212514 ATTCTGCCTCTCCGGCTGGCTGAGTGACCGTACGCTCGTTTT
130 ATTATGCCTCTCCGGCTGGCTGAGTGACCGTACGCTCGTTTT
* * * * * * *
20212556 GTGGGTTGGCTTAGGCATATGGGGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGT
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCCAAG-ACCAGACCGGACCAAGGGTTGC
* * * * * *
20212619 GGGAACAGGACCGGTAGTGTGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCG
64 GGCAACAGGACCAGCAGTGTGATAGACAGCACACAGAGGGGGATCAGACTGATCCCCGGCTTGCG
20212684 CATTATGCCTCTCCG
129 CATTATGCCTCTCCG
20212699 ATCGACCTCT
Statistics
Matches: 119, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
169 4 0.03
170 73 0.61
171 42 0.35
ACGTcount: A:0.19, C:0.26, G:0.34, T:0.22
Consensus pattern (171 bp):
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGACCAGACCGGACCAAGGGTTGCGG
CAACAGGACCAGCAGTGTGATAGACAGCACACAGAGGGGGATCAGACTGATCCCCGGCTTGCGCA
TTATGCCTCTCCGGCTGGCTGAGTGACCGTACGCTCGTTTT
Found at i:20212784 original size:26 final size:26
Alignment explanation
Indices: 20212754--20212806 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20212744 GTTGACTTAG
*
20212754 GCATATGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
20212780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
20212806 G
1 G
20212807 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:20213419 original size:158 final size:158
Alignment explanation
Indices: 20212780--20213438 Score: 447
Period size: 158 Copynumber: 4.2 Consensus size: 158
20212770 CCCAATCTAA
* * * * * *
20212780 GCATACGGAGTTCATTCCCAGTCTAAGAT-CGGATCGGATCGAAGGTTACGAAAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCAG-CCAGACCGAGGGTTACGACAGCAGGATCGAC
* * ** * * * * * * *
20212844 AGCATGCAGGGGGGACCGGGTTGAATCTCGA-CTTGCGCATTTTGCCTCTCTGACCAGCTGAGCA
65 AGCACGCAGGGGGGACCGAGCCG-ATCCCTAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCG
*
20212908 CCCGCACG-TCCATTTCATGGGTTGGCTTAG
129 CCCGCACGCT-CATTTCATGGGTTGACTTAG
* * * * * * *
20212938 GCATAGGGAGTTCATT-CCATGTCTAAG-TCCCAGTCGGACCGAGGGTTATGGCAACGGGATCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-CCAGCCAGACCGAGGGTTACGACAGCAGGATC-G
* * * * * *
20213001 -CAGCACGCA-GGGGGACCGAGCCGAT-CCTCGGCTTACGCATTCTACCTCTCCAGTCGGATGAG
63 ACAGCACGCAGGGGGGACCGAGCCGATCCCT-AGCTTGCGCATTCTACCTCTCCGGCCAGCTGAG
* * * * * * *
20213063 TGCCCACACACCCATTTCAAGTGTTGGCTTAG
127 CGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * ** * * *
20213095 GCATAGGGAGTTCATT-CCATGTGTAAGCTCCAGCCAGACTGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCAGCCAGACCGAGGGTTACGACAGCAGGATCGAC
* * * * * * * * * * *
20213159 AGCATGTAGATGGGGACCGAGTCGATCCCTGGCTTGCGTATTATACCTTTTCGGCCAGCTCAACG
65 AGCACGCAG-GGGGGACCGAGCCGATCCCTAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCG
* * * ** **
20213224 CTCGCATGATTGTTTTGTGGGTTGACTTAG
129 CCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * *
20213254 GCTTACAGAGTTCATTCCCAGTGTAAGAT-CAGACCAGACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCAG-CCAGACCGAGGGTTACGACAGCAGGATCGAC
* * * * *
20213318 AGCACGCAGGGGGGACCGGGCCGATCCCTAGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCTAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGC
* *
20213383 CCGCACGCTCATTTCGTGGGTTAACTTAG
130 CCGCACGCTCATTTCATGGGTTGACTTAG
* *
20213412 GCATACAGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
20213439 CATACAGAGT
Statistics
Matches: 383, Mismatches: 104, Indels: 28
0.74 0.20 0.05
Matches are distributed among these distances:
155 1 0.00
156 3 0.01
157 120 0.31
158 143 0.37
159 110 0.29
160 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCAGCCAGACCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCTAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGACTTAG
Found at i:20213462 original size:26 final size:26
Alignment explanation
Indices: 20213412--20213464 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20213402 GTTAACTTAG
* *
20213412 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAACTCTAA
*
20213438 GCATACAGAGTTCATTCCAACTCTAA
1 GCATACAGAGTTCATCCCAACTCTAA
20213464 G
1 G
20213465 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAACTCTAA
Found at i:20213597 original size:184 final size:184
Alignment explanation
Indices: 20213257--20213623 Score: 411
Period size: 184 Copynumber: 2.0 Consensus size: 184
20213247 GACTTAGGCT
* * * *
20213257 TACAGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGACAGCA
1 TACAGAGTTCATTCCAACTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCA
* ** * * * *
20213322 CGCAGGGGGGACCGGGCCGATCCCTAGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGC
66 CACAGGGGGGACCGGGCCGATCCCTAGCTTGCACATTCTGACTCTCCGGCCAGCTGAGCGCCCAC
* *
20213387 ACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCA
131 ACGCTCATTTCGCGGGATAACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCA
* * * * *
20213441 TACAGAGTTCATTCCAACTCTAAGATCGGATCGGATCGAGGGTTGC-AGCAGCAGGATCGGCAGC
1 TACAGAGTTCATTCCAACTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAGGATCGACAGC
* **
20213505 ACACAGGGGGGACCGGGCCGAT-CCTCGGCTTGCACATTCT-ACTACTTTGGCCAGCTGAGCGCC
65 ACACAGGGGGGACCGGGCCGATCCCT-AGCTTGCACATTCTGACT-CTCCGGCCAGCTGAGCGCC
* ** ** *
20213568 CACACTGCT-GTTTCGCGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 CACAC-GCTCATTTCGCGGGATAACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
20213624 CCCAGTCGGA
Statistics
Matches: 151, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
183 9 0.06
184 139 0.92
185 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (184 bp):
TACAGAGTTCATTCCAACTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCA
CACAGGGGGGACCGGGCCGATCCCTAGCTTGCACATTCTGACTCTCCGGCCAGCTGAGCGCCCAC
ACGCTCATTTCGCGGGATAACTTAGGCATACAGAGTTCATCCCATGTCTAAGCA
Found at i:20213682 original size:501 final size:502
Alignment explanation
Indices: 20213087--20214007 Score: 1187
Period size: 501 Copynumber: 1.8 Consensus size: 502
20213077 TTTCAAGTGT
* * * *
20213087 TGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCTCCAGCCAGACTGAGGGTTGTGGCAGCGG
1 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTGTAGCAGCGG
* * * * *
20213152 GACCGACAGCATGTAGATGGGGACCGAGTCGATCC-CTGGCTTGCGTATTATACCT-TTTCGGCC
66 GACCGACAGCACGCAGATGGGGACCGAGTCGATCCTC-GGCTTGCGCATTATACCTCTCT-GACC
* * * * ** * *
20213215 AGCTCAACGCTCGCATGA-TTGTTTTGTGGGTTGACTTAGGCTTACAGAGTTCATTCCC-AGTGT
129 AGCTCAACGCCCGCA-CACTCGTCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTA-TCT
* * * * * *
20213278 AAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGG-GGGGACCGGGCCGA
192 AAGATCAGACCAGACCAAGGGTTACGACAGCAGGATCGACACCACGCAGGAAGGGACCGAGCCGA
* ** * * *
20213342 TCCCTAGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTAA
257 TCCCCAGCTCATGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAA
*
20213407 CTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCAACTCTAAGATCGGA
322 CTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCATACAGAATTCATTCCAACTCTAAGATCGGA
* *
20213471 TCGGA-TCGAGGGTTGC-AGCAGCAGGATCGGCAGCACACAGGGGGGACCGGGCCGATCCTCGGC
386 TCGGACT-GAGGGTTGCGA-CAGCAGGACCAGCAGCACACAGGGGGGACCGGGCCGATCCTCGGC
20213534 TTGCACATTCTACTACTTTGGCCAGCTGAGCGCCCACACTGCTGTTTCGCGGGA
449 TTGCACATTCTACTACTTTGGCCAGCTGAGCGCCCACACTGCTGTTTCGCGGGA
* *
20213588 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-TCAAGGGTTGTAGCAGCG
1 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACT-AAGGGTTGTAGCAGCG
* * *
20213652 GGGCCGACAGCACGCAGA-GAGGGACCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGATC
65 GGACCGACAGCACGCAGATG-GGGACCGAGTCGATCCTCGGCTTGCGCATTATACCTCTCTGACC
* *
20213716 GGCTCAATGCCCGCACACTCGTCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAA
129 AGCTCAACGCCCGCACACTCGTCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAA
* * * * * *
20213781 GATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACACCACGTAGGAAGGGATCGAGCTGATC
194 GATCAGACCAGACCAAGGGTTACGACAGCAGGATCGACACCACGCAGGAAGGGACCGAGCCGATC
* * * * * **
20213846 CCCGGCTCATGCATTCTACCTTTTCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCT
259 CCCAGCTCATGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACT
* * * *
20213911 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCGGATCG
324 TAGGCATACAGAGTTCATCCCATGTCTAAGCATACAGAATTCATTCCAACTCTAAGATCGGATCG
20213976 GACTGAGGGTTGCGACAGCAGGACCAGCAGCA
389 GACTGAGGGTTGCGACAGCAGGACCAGCAGCA
20214008 GGATCGGTAG
Statistics
Matches: 354, Mismatches: 56, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
500 3 0.01
501 199 0.56
502 150 0.42
503 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (502 bp):
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTGTAGCAGCGG
GACCGACAGCACGCAGATGGGGACCGAGTCGATCCTCGGCTTGCGCATTATACCTCTCTGACCAG
CTCAACGCCCGCACACTCGTCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAAGA
TCAGACCAGACCAAGGGTTACGACAGCAGGATCGACACCACGCAGGAAGGGACCGAGCCGATCCC
CAGCTCATGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTA
GGCATACAGAGTTCATCCCATGTCTAAGCATACAGAATTCATTCCAACTCTAAGATCGGATCGGA
CTGAGGGTTGCGACAGCAGGACCAGCAGCACACAGGGGGGACCGGGCCGATCCTCGGCTTGCACA
TTCTACTACTTTGGCCAGCTGAGCGCCCACACTGCTGTTTCGCGGGA
Found at i:20213943 original size:26 final size:26
Alignment explanation
Indices: 20213914--20213966 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20213904 GTTGGCTTAG
* *
20213914 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
20213940 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
20213966 G
1 G
20213967 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:20214510 original size:172 final size:171
Alignment explanation
Indices: 20214191--20214531 Score: 382
Period size: 172 Copynumber: 2.0 Consensus size: 171
20214181 CCAGCAGTGG
* * *
20214191 GATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCTAACTTGCGCATTCTACCTCTCCGGTTGG
1 GATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTAACTTGCGCATTATACCTCTCCGGTCGG
* *
20214256 CAGAGCACCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
66 CACAGCACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGC
* * ** *
20214321 CCCAGCCAGATCGAGGGTTGTGGTAGCAGGATCGACAGCGA
131 ACCAGCCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCGA
* * * ** *
20214362 GATCGACAGCATGCAGGAGGGGGATTGGGTTGAT-CCTCGGCTTGCGCATTATGCCTCTCCGGTC
1 GATCGACAGCACGCA-GAGGGGGATCGGGCTGATCCCT-AACTTGCGCATTATACCTCTCCGGTC
* * ** * *
20214426 GGCTCAGCATCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
64 GGCACAGCACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTA
* *** *
20214490 AG-ATCAGATTGGACCGAGGGTTGCAGCAGCATGATCGACAGC
128 AGCACCAG-CCAGACCGAGGGTTGCAGCAGCAGGATCGACAGC
20214532 ACATAGGGGG
Statistics
Matches: 139, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
171 19 0.14
172 117 0.84
173 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (171 bp):
GATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTAACTTGCGCATTATACCTCTCCGGTCGG
CACAGCACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGC
ACCAGCCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCGA
Found at i:20214653 original size:26 final size:26
Alignment explanation
Indices: 20214623--20214675 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20214613 GTTGGCTTAG
*
20214623 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
20214649 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
20214675 G
1 G
20214676 ATCGAAGCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:20214855 original size:26 final size:26
Alignment explanation
Indices: 20214819--20214871 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20214809 GTTGACTTAG
*
20214819 GCATACGGAGTTCATCTCCAGTGTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
* *
20214845 GCATAGGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
20214871 G
1 G
20214872 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:20214868 original size:196 final size:196
Alignment explanation
Indices: 20214522--20214894 Score: 527
Period size: 196 Copynumber: 1.9 Consensus size: 196
20214512 GCAGCAGCAT
* * * * * ** * *
20214522 GATCGACAGCACATAGGGGGGACCGGGTCGTTCCCCAGCTTGTGCATTCTGCCTCTCTGGCCGGT
1 GATCAACAACACATAGGAGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCTGACCGGC
* *
20214587 TGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 TGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
*
20214652 TAAGGAGTTCATTCCCAGTCTAAGATC-GAAGCGGACCAAGGGTTGCGACAGCAGGACCAGATGC
131 TAAGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCGACAGCAGGACCAGATGC
20214716 AG
195 AG
20214718 GATCAACAACACATAGGAGGGACCGGGCCGATCCCC-GACTTACGCATTCTGCCTCTCTGACCGG
1 GATCAACAACACATAGGAGGGACCGGGCCGATCCCCAG-CTTACGCATTCTGCCTCTCTGACCGG
* * * *
20214782 CTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTGTAAG
65 CTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
* * *
20214846 CATAGGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
129 CATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCG
20214895 GTAGTAGGAT
Statistics
Matches: 155, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
195 1 0.01
196 149 0.96
197 5 0.03
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
GATCAACAACACATAGGAGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCTGACCGGC
TGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGACCAGATGCA
G
Found at i:20214922 original size:709 final size:700
Alignment explanation
Indices: 20213309--20215061 Score: 1813
Period size: 709 Copynumber: 2.5 Consensus size: 700
20213299 TTGCGACAGT
* * * * * * *
20213309 AGGATCGACAGCACGCAGGGGGGACCGGGCCGAT-CCCTAGCTTGTGCATTCTGCCTCTCCGGCC
1 AGGATCAACAACACACAGGAGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACC
* * * *
20213373 GGTTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAA
65 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAA
* * * * * *
20213438 GCATACAGAGTTCA-TTCCAACTCTAAGATCGGATCGGATCGAGGGTTGCAGCAGCAGGATCGGC
130 GCATACGGAGTTCATTTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGC-G-AGTAGGATCGGC
* * * ** *
20213502 AGCACACAGGGGGGACCGGGCCGATCCTCGGCTTGCACATTCTA-CTACTTTGGCCAGCTGAGCG
192 AGCACGCA-GGGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCT-CTCCGGCCGGCTGAGCG
** * *
20213566 CCCACACTGCT-GTTTCGCGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
255 CCCACAC-GCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
*
20213630 CGGATCAAGGG-T-T-GTAGCA-G-CGGGGCCGACAGCACGCAGAGAGGGACCGAGTCGATCCTC
319 CGGATCGAGGGTTGTGGTAGCAGGACGGGGCCGACAGCACGCAGAGAGGGACCGAGTCGATCCTC
*
20213690 GGCTTGCGCATTATGCCTCTCTGATCGGCTCAATGCCCGCACACTCGTCTCATGGGTTGACTTAG
384 GGCTTGCGCATTATGCCTCTCCGATCGGCTCAATGCCCGCACACTCGTCTCATGGGTTGACTTAG
* *
20213755 GCATACAGAGTTCATTCCCTATCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACA
449 GCATACAGAGTTCATTCCCTATCTAAGATCAGACCGGACCAAGGGTTACAGCAGCAGGATCGACA
* * * *
20213820 CCACGTAGGAAGGGATCGAGCTGATCCCCGGCTCATGCATTCTACCTTTTCGACCGGCTGAGCGC
514 CCACATAGGAAGGGACCGAGCTGATCCCCAGCTCATGCATTCTACCTTCTCGACCGGCTGAGCGC
* * *
20213885 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAA
579 CCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAA
* * **
20213950 TTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGACCAGCAGC
644 TTCATTCCCAGTCTAAGATCGAAGCGGACCAAGGGTTGCGACAGCAGGACCAGCAGC
*** ** * * * *
20214007 AGGATCGGTAGTACGCAGGGGGGACCGGGTCGATCCCCGGA-TTGCGCATTCTGCCTCTCCGATC
1 AGGATCAACAACACACAGGAGGGACCGGGCCGATCCCC-GACTTGCGCATTCTGCCTCTCCGACC
* * * * * * * *
20214071 GGCAGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCAT-TCCATCTCTA
65 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTCTA
* * * * * * ** *
20214135 AGCCCCTACCGG-GCTGAGGGTTGTGGCAG--TAGGACCAGCAGCAAGACC-A-----GC-AGTG
129 AG--CATA-CGGAGTTCA---TT-T-CCAGTCTAAGATCAG-A-CCGGACCGAGGGTTGCGAGTA
* * * **
20214190 GGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCC-CTAACTTGCGCATTCTACCTCTCCGGTT
184 GGATCGGCAGCACGC--AGGGGGACCGGGCCGATCCTC-GACTTGCGCATTCTACCTCTCCGGCC
* * * * *
20214254 GGCAGAGCACCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
246 GGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * *
20214319 GCCCCAGCCAGATCGAGGGTTGTGGTAGCAGGATCGACAGCGAGATCGACAGCATGCAGGAGGGG
311 GCCCCAGCCGGATCGAGGGTTGTGGTAGCAGGA-CG---G-G-G-CCGACAGCACGCA-GAGAGG
** * * * *
20214384 GATTGGGTTGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTC-A-GCATC-CACATGCTC
368 GACCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAATGC-CCGCACA--CTC
* * * ** *
20214446 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGATTGGACCGAGGG
430 GTCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTA-TCTAAGATCAGACCGGACCAAGGG
* * * * * * ** *
20214510 TTGCAGCAGCATGATCGACAGCACATAGG-GGGGACCG-GGTCGTTCCCCAGCTTGTGCATTCTG
494 TTACAGCAGCAGGATCGACACCACATAGGAAGGGACCGAGCT-GATCCCCAGCTCATGCATTCTA
* *
20214573 CC-TCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
558 CCTTCTC-GACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
*
20214637 TTCCATGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATCGAAGCGGACCAAGGGTTGCGAC
622 TTCCATGTCTAAGCATACA-GAATTCATTCCCAGTCTAAGATCGAAGCGGACCAAGGGTTGCGAC
20214701 AGCAGGACCAG-ATGC
686 AGCAGGACCAGCA-GC
* * *
20214716 AGGATCAACAACACATAGGAGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGACCG
1 AGGATCAACAACACACAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCG
* *
20214781 GCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTGTAAG
66 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAG
* *
20214846 CATAGGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAG
131 CATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-G-AGTAGGATCGGCAG
* * ** * *
20214911 CACGCAGGGGGACCGAGCCAATCCTCGACTTGCGCATTCTACCTCTCCGGCCGATTGAGTGCCCG
194 CACGCAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCA
* * * * *
20214976 CACGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAACCCCAGCCGGAC
259 CACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAT
20215041 CGAGGGTTGTGGTAGCAGGAC
324 CGAGGGTTGTGGTAGCAGGAC
20215062 TGGCAGCACG
Statistics
Matches: 847, Mismatches: 153, Indels: 100
0.77 0.14 0.09
Matches are distributed among these distances:
696 19 0.02
697 104 0.12
698 104 0.12
699 6 0.01
700 13 0.02
701 3 0.00
702 8 0.01
703 11 0.01
704 12 0.01
705 5 0.01
706 4 0.00
707 7 0.01
708 19 0.02
709 382 0.45
710 133 0.16
711 17 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (700 bp):
AGGATCAACAACACACAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCG
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAG
CATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAGTAGGATCGGCAGCA
CGCAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCACA
CGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCG
AGGGTTGTGGTAGCAGGACGGGGCCGACAGCACGCAGAGAGGGACCGAGTCGATCCTCGGCTTGC
GCATTATGCCTCTCCGATCGGCTCAATGCCCGCACACTCGTCTCATGGGTTGACTTAGGCATACA
GAGTTCATTCCCTATCTAAGATCAGACCGGACCAAGGGTTACAGCAGCAGGATCGACACCACATA
GGAAGGGACCGAGCTGATCCCCAGCTCATGCATTCTACCTTCTCGACCGGCTGAGCGCCCGCACA
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAATTCATTC
CCAGTCTAAGATCGAAGCGGACCAAGGGTTGCGACAGCAGGACCAGCAGC
Found at i:20216703 original size:26 final size:26
Alignment explanation
Indices: 20216667--20216718 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20216657 GTTGACTTAG
*
20216667 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
20216693 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20216719 TATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20216711 original size:196 final size:196
Alignment explanation
Indices: 20216365--20216760 Score: 512
Period size: 196 Copynumber: 2.0 Consensus size: 196
20216355 GGGTTGCAGT
* * * * *
20216365 AGCAAGATCGACAGCACGCAGGGGGGATCGGGCCAGTCCTTGGCTTGCGCATTCTGCCTCTCCGA
1 AGCAAGATCGACAGCACGCAGGGGGGATCGAGCCAATCCTCGACTTGCGCACTCTGCCTCTCCGA
* * * *
20216430 CCGATTGAACGCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCT
66 CCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCT
* * * *
20216495 AAGCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGA-CTA
131 AAGCAAACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATC-A
20216559 GC
195 GC
* *
20216561 AGCAGGATCGATAGCACGCAGGGGGGA-CTGAGCCAATCCTCGACTT-CTGCACTCTGCCTCTCC
1 AGCAAGATCGACAGCACGCAGGGGGGATC-GAGCCAATCCTCGACTTGC-GCACTCTGCCTCTCC
* * * * *
20216624 GGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
64 GACCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATA
* * * *
20216688 TCTAAGCATACGGAGTTCATTCCCAATCTAATATCAGACCAGACCGAGGGTTACGGTAGTAGGAT
128 TCTAAGCAAACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGAT
20216753 CAGC
193 CAGC
20216757 AGCA
1 AGCA
20216761 TGCAGTGGGG
Statistics
Matches: 172, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
195 2 0.01
196 166 0.97
197 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (196 bp):
AGCAAGATCGACAGCACGCAGGGGGGATCGAGCCAATCCTCGACTTGCGCACTCTGCCTCTCCGA
CCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCT
AAGCAAACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCAG
C
Found at i:20217075 original size:159 final size:158
Alignment explanation
Indices: 20216693--20217077 Score: 384
Period size: 159 Copynumber: 2.4 Consensus size: 158
20216683 CCCAGTCTAA
* * * * *
20216693 GCATACGGAGTTCATTCCCAATCTAATATCAGACCAGACCGAGGGTTACGGTAGTAGGATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGA-C
** * * * ** * *
20216757 AGCATGCAGTGGGGACCGGGCCGATCCCTGGCTTGTGCATTTTCCCTCTCGGGTCGGCTGAGTGC
65 AGCACACAGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTATCCCTCTCCAGTCGACTCAGTGC
* ** * *
20216822 CCTCACGTTCGTTTCATGGGTTGGCTTAG
130 CCTAACACTCATTTCATGGGTTGACTTAG
* *** * * * *
20216851 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGA-TCGAGGGTTGTGGCAGTGGGATTG
1 GCATACGGAGTTCATTCCCA-GTCTAA-AATCAGACCAGACT-GAGGGTTGCGGCAGTAGGATCG
* *
20216913 ACAGCACACAGAGAGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCAGTCGACTCAG
63 ACAGCACACAGAG-GGGACCGGGCCGATCCCTGGCTTGCGCATTATCCCTCTCCAGTCGACTCAG
*
20216978 TG-CCTGAACACTCATTTCGTGGGTTGACTTAG
127 TGCCCT-AACACTCATTTCATGGGTTGACTTAG
* **
20217010 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAAACTGAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACA
20217075 GCA
66 GCA
20217078 TGCAGGGGGG
Statistics
Matches: 178, Mismatches: 40, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.02
158 55 0.31
159 116 0.65
160 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACA
GCACACAGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTATCCCTCTCCAGTCGACTCAGTGCC
CTAACACTCATTTCATGGGTTGACTTAG
Found at i:20217680 original size:26 final size:26
Alignment explanation
Indices: 20217650--20217702 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20217640 TTTGGCTTAG
*
20217650 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
*
20217676 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
20217702 G
1 G
20217703 ATTTTTTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:20218056 original size:26 final size:26
Alignment explanation
Indices: 20218027--20218079 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20218017 GTTGACTTAG
* *
20218027 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20218053 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20218079 G
1 G
20218080 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20218517 original size:158 final size:155
Alignment explanation
Indices: 20218053--20218553 Score: 472
Period size: 159 Copynumber: 3.2 Consensus size: 155
20218043 CCCAGTCTAA
* * * *
20218053 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACTGGA-TCGAGGGTTGCGACAGCAGGATGGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAC-GGACT-GAGGGTTCCGATAGCAGGATCGA
* * * * ** * *
20218116 CACACGCAGGGGGGACCGGGCCGATCCCCTGCTTGCGTATTCTGCCTCTCCAGCTGGCTGAGCGC
63 CACACGCAGGGGGGACTGGGCCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGCCAGCTAAGTGC
*
20218181 CCGCACACTCATTTCGTGGGTTGGCTTAG
127 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * ** * * * * *
20218210 CCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCGGACCAAGGGTTCTGGTAACGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACGGACTGAGGGTTCCGATAGCAGGATCGAC-
* * * * *
20218275 ACACGCAGAGGGGGA-TCGGGCCGATCCCCGGTTGGTGCATTATGCATCTCTGG-CAGTCTCAGT
64 ACACGCAG-GGGGGACT-GGGCCGATCCCCGCTT-GTGCATTCTGCCTCTCCGGCCAG-CTAAGT
* *
20218338 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
125 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
20218369 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTCCGATAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGGACTGAGGGTTCCGATAGCAGGATCGAC
* * * *
20218433 AGCACACAGGGGGGACTGGGTCGGTCCCCAGCTTGTGCATTCTACCTCTCCGGCCAGCTAAGTGC
64 A-CACGCAGGGGGGACTGGGCCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGCCAGCTAAGTGC
*
20218498 CCGTACGCTCATTTCGTGGGTTGGCTTAG
127 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
20218527 GTATGCGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20218554 CATGCGAAGT
Statistics
Matches: 269, Mismatches: 60, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 40 0.15
158 105 0.39
159 118 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGGACTGAGGGTTCCGATAGCAGGATCGACAC
ACGCAGGGGGGACTGGGCCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCAGCTAAGTGCCCGC
ACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20218925 original size:26 final size:26
Alignment explanation
Indices: 20218895--20218949 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
20218885 GTTGACTTAG
*
20218895 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGACTTCATTCCC-AGTCTAA
20218921 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
20218947 GCA
1 GCA
20218950 GCACGCAGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:20219227 original size:26 final size:26
Alignment explanation
Indices: 20219191--20219243 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20219181 GTTAGCTTAG
20219191 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
*
20219217 GCATATGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
20219243 G
1 G
20219244 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:20219427 original size:26 final size:26
Alignment explanation
Indices: 20219390--20219442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20219380 GTTGACTTAG
*
20219390 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20219416 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20219442 G
1 G
20219443 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20219498 original size:26 final size:27
Alignment explanation
Indices: 20219461--20219514 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
20219451 GGATCGAGGG
* *
20219461 TTGCGGCATTCTGTCTCTCTGGTCGGC
1 TTGCGGCATTCTGCCTCTCTAGTCGGC
20219488 TTGC-GCATTCTGCCTCTCTAGTCGGC
1 TTGCGGCATTCTGCCTCTCTAGTCGGC
20219514 T
1 T
20219515 GAGCGCCCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.06, C:0.31, G:0.26, T:0.37
Consensus pattern (27 bp):
TTGCGGCATTCTGCCTCTCTAGTCGGC
Found at i:20220535 original size:158 final size:158
Alignment explanation
Indices: 20220309--20221038 Score: 580
Period size: 159 Copynumber: 4.5 Consensus size: 158
20220299 CCCAGCTTGT
* * * * * * *
20220309 GCATTATGCCTCTTCGACTGGCTCAGTGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATGCG
1 GCATTCTGCCTCTTCGACAGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
20220374 GAGTTCATTCCCAGTCTCAGATCAGACCGGACTGTGGGTTATGGTAGTAGGATTGACAGCACGCA
66 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGATTGACAGCACGCA
* *
20220439 GAGGGGACCGGGCTGATCCTCGGCTTAC
131 GAGGGGACCGGGCCGATCCTCGACTTAC
* * * *
20220467 GTATTCTGTCTC-TCTGATC-GGCTGAGTGCCCGCATGCCCGTTTCGTGGGTTGACTTAGGCATA
1 GCATTCTGCCTCTTC-GA-CAGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATA
* ** * * * ** *
20220530 GGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGA-TCGAGGGTTGTGGCAGCGGGACCGATAGC
64 CGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACT-GAGGGTTATGGTAGCAGGATTGACAGC
*
20220592 ACACAGAGGAGGACCGGGCCGATCCTCGACTTAC
126 ACGCAGAGG-GGACCGGGCCGATCCTCGACTTAC
* * * * * * * *
20220626 GCATTATGCCTCTTCGACTGGCTCAATGCTCGTACGCTCGTTTCATGGGTTGACTTAGGCATACG
1 GCATTCTGCCTCTTCGACAGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
20220691 GAGTTCATTCCCAGTGTAAGAT-AGGACCGGACCGAGGGTTACGGTAGCAGGATTGACAGAACGC
66 GAGTTCATTCCCAGTCTAAGATCA-GACCGGACTGAGGGTTATGGTAGCAGGATTGACAGCACGC
* *
20220755 AG-GGGTGACCGGGCCGGTCC-CGACTTGC
130 AGAGGG-GACCGGGCCGATCCTCGACTTAC
* * ** * * *
20220783 ACATTCTGCCTCTTCGGCAGGCTGAGCACCCGCAAGCTCATTTCGTGGGTTGGCTTAGGGATACG
1 GCATTCTGCCTCTTCGACAGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
20220848 GAGTTCATTCCCAGCCTAAGATCAAACTGGA-TCGAGGGTTGCGGTAGTAGGACCAGCAGCAGGA
66 GAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGG-T----TA-T--G----GTAGCAGGA
* * * * *
20220912 TCGATAGCACACAGGGTGGGACCGGGCCGATCCCCGACTTAC
118 TTGACAGCACGCAGAG-GGGACCGGGCCGATCCTCGACTTAC
* * * * * * * *
20220954 ACATTCTACCTGTCCGGCCA-GCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATAC
1 GCATTCTGCCTCTTC-GACAGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
20221018 AGAGTTCATCCCCAATCTAAG
65 GGAGTTCATTCCCAGTCTAAG
20221039 CATACAGAGT
Statistics
Matches: 449, Mismatches: 92, Indels: 49
0.76 0.16 0.08
Matches are distributed among these distances:
157 95 0.21
158 116 0.26
159 119 0.27
160 5 0.01
162 2 0.00
165 1 0.00
169 18 0.04
170 14 0.03
171 76 0.17
172 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATTCTGCCTCTTCGACAGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGATTGACAGCACGCA
GAGGGGACCGGGCCGATCCTCGACTTAC
Found at i:20221009 original size:328 final size:316
Alignment explanation
Indices: 20220342--20221038 Score: 731
Period size: 317 Copynumber: 2.2 Consensus size: 316
20220332 CAGTGCTCGT
* * *
20220342 ACGCTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTCAGATCAGACCGGACT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * * * **
20220407 GTGGGTTATGGTAGTAGGATTGACAGCACGCAGAGGGGACCGGGCTGATCCTCGGCTTACGTATT
66 GAGGGTTACGGTAGCAGGATTGACAGAACGCAGAGGGGACCGGGCCGATCCTCGACTTACACATT
* * ** * * *
20220472 CTGTCTCTCTGATCGGCTGAGTGCCCGCATGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTT
131 CTGCCTCTCGGA-CGGCTGAGCACCCGCAAGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
20220537 CATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCACACAGAGGA
195 CATTCCATGCCTAAGACCAAACCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCACACAGAGGA
* * * * ** * * *
20220602 GGACCGGGCCGATCCTCGACTTACGCATTATGCCTCTTCGACTGGCTCAATGCTCGT
260 GGACCGGGCCGATCCCCGACTTACACATTATACCTCTCCGACCAGCTCAACGCCCGC
* *
20220659 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGAT-AGGACCGGAC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGAC
* *
20220723 CGAGGGTTACGGTAGCAGGATTGACAGAACGCAG-GGGTGACCGGGCCGGTCC-CGACTTGCACA
65 CGAGGGTTACGGTAGCAGGATTGACAGAACGCAGAGGG-GACCGGGCCGATCCTCGACTTACACA
* * *
20220786 TTCTGCCTCTTCGG-CAGGCTGAGCACCCGCAAGCTCATTTCGTGGGTTGGCTTAGGGATACGGA
129 TTCTGCCTC-TCGGAC-GGCTGAGCACCCGCAAGCCCATTTCGTGGGTTGACTTAGGCATACGGA
* * *
20220850 GTTCATTCCCA-GCCTAAGATCAAACTGGATCGAGGGTTGCGGTAGTAGGACCAGCAGCAGGATC
192 GTTCATT-CCATGCCTAAGACCAAACCGGATCGAGGG-T----T-GT-GG--CAGC-G--GGACC
* * * * *
20220914 GATAGCACACAG-GGTGGGACCGGGCCGATCCCCGACTTACACATTCTACCTGTCCGGCCAGCTG
244 GATAGCACACAGAGG-AGGACCGGGCCGATCCCCGACTTACACATTATACCTCTCCGACCAGCTC
*
20220978 AGCGCCCGC
308 AACGCCCGC
* * * *
20220987 ACGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAG
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20221039 CATACAGAGT
Statistics
Matches: 310, Mismatches: 52, Indels: 25
0.80 0.13 0.06
Matches are distributed among these distances:
315 1 0.00
316 86 0.28
317 106 0.34
321 1 0.00
322 2 0.01
323 2 0.01
325 4 0.01
326 1 0.00
327 2 0.01
328 105 0.34
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (316 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
GAGGGTTACGGTAGCAGGATTGACAGAACGCAGAGGGGACCGGGCCGATCCTCGACTTACACATT
CTGCCTCTCGGACGGCTGAGCACCCGCAAGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCATGCCTAAGACCAAACCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCACACAGAGGAG
GACCGGGCCGATCCCCGACTTACACATTATACCTCTCCGACCAGCTCAACGCCCGC
Found at i:20221048 original size:26 final size:26
Alignment explanation
Indices: 20221012--20221064 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20221002 TTTGACTTAG
20221012 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
20221038 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20221064 G
1 G
20221065 ATCAGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20222107 original size:26 final size:26
Alignment explanation
Indices: 20222077--20222129 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20222067 GTTGACTTAG
*
20222077 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20222103 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20222129 G
1 G
20222130 ATCAGATCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20222429 original size:158 final size:158
Alignment explanation
Indices: 20222225--20222603 Score: 365
Period size: 158 Copynumber: 2.4 Consensus size: 158
20222215 CGGCCGACCG
* * * * * * *
20222225 AGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCC
1 AGCGCCCACACGCTCGATTCGTGGGTTGGCTTAAGCATACGGAGTTCATTTCATGTCTAAGCACC
* * *** * *
20222290 AG-CCAATTCGAGGGTTGTGGCAGCGGGACCTGTAGCACGTAGAGGGGGATCGGG-CTGATCCTC
66 AGACCAACT-GAGGGTTGTGGCAGCAGGACCAACAGCACGCAG-GGGGGACCGGGTC-GATCCTC
* *
20222353 AACTTGCGCATTATGCCTCTCCAGCTGGTTC
128 AACTTACGCATTATCCCTCTCCAGCTGGTTC
* * * * *
20222384 AG-GCCCACACGTTC-ATTTTGTGGGTTGACTTAAGCATACGGAGTTCA-TTCCTAGTCTATG-A
1 AGCGCCCACACGCTCGA-TTCGTGGGTTGGCTTAAGCATACGGAGTTCATTTCAT-GTCTAAGCA
* ** **
20222445 TCAGATCGGACTGAGGGTTGTGGCAGCAGGTTCAACAGCACGCAGGGGGGACCGGGTCGATCCTC
64 CCAGA-CCAACTGAGGGTTGTGGCAGCAGGACCAACAGCACGCAGGGGGGACCGGGTCGATCCTC
** * *
20222510 AGTTTACGCATTCTCCCTCTCCAGCTGGTTG
128 AACTTACGCATTATCCCTCTCCAGCTGGTTC
** *
20222541 AGCGCCCGTACGCTCGATTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCA
1 AGCGCCCACACGCTCGATTCGTGGGTTGGCTTAAGCATACGGAGTTCATTTCATGTCTAAGCA
20222604 TAAGGAGTTC
Statistics
Matches: 173, Mismatches: 38, Indels: 18
0.76 0.17 0.08
Matches are distributed among these distances:
157 51 0.29
158 112 0.65
159 10 0.06
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (158 bp):
AGCGCCCACACGCTCGATTCGTGGGTTGGCTTAAGCATACGGAGTTCATTTCATGTCTAAGCACC
AGACCAACTGAGGGTTGTGGCAGCAGGACCAACAGCACGCAGGGGGGACCGGGTCGATCCTCAAC
TTACGCATTATCCCTCTCCAGCTGGTTC
Found at i:20222601 original size:26 final size:26
Alignment explanation
Indices: 20222572--20222627 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20222562 TGGGTTGGCT
*
20222572 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATAAGGAGTTCATTCCCA-GTC
20222598 TAAGCATAAGGAGTTCATTCCCAGTC
1 TAAGCATAAGGAGTTCATTCCCAGTC
20222624 TAAG
1 TAAG
20222628 ATTAGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATAAGGAGTTCATTCCCAGTC
Found at i:20222985 original size:195 final size:194
Alignment explanation
Indices: 20222479--20222993 Score: 611
Period size: 196 Copynumber: 2.6 Consensus size: 194
20222469 AGCAGGTTCA
* * * * * *
20222479 ACAGCACGCAGGGGGGACCGGGTCGATCCTCAGTTTACGCATTCTCCCTCTCCAGCTGGTTGAGC
1 ACAGCACGCAGGGGGGACTGGCT-GATCCCCAGCTTACGCATTCTGCCTCTCCGGC-GGTTGAGC
* * *
20222544 GCCCGTACGCTCGATTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATAAGG
64 GCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGG
* * * * * *
20222609 AGTTCATTCCCAGTCTAAGATTAGATCGGATAGAGGGTTGCGACAGTAGGATCAGCGGCAAGATC
129 AGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGACAGCAGGACCAGCAGCAAGATC
20222674 G
194 G
** * * **
20222675 ACAGCACATAGGGGGGATTGGGCCGATCCCC-GACTTACGCATTCTGCCTCTCCGGCCGACTGAG
1 ACAGCACGCAGGGGGGACT-GGCTGATCCCCAG-CTTACGCATTCTGCCTCTCCGG-CGGTTGAG
* * * * *
20222739 TGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTGTAAGCATATG
63 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAG
* * ** *
20222804 GAGTTTATTTCCAGTCTAAGATCAGACCGGACCA-AGGGTTGCGGTAGCAGGACCAGCAGCAGGA
128 GAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGCGACAGCAGGACCAGCAGCAAGA
*
20222868 TTG
192 TCG
* * * * *
20222871 GCAGCATGCAGGGGGGACTGGCTGAACCCCAGCTTACGCATTCTGCCTCTCTGGTCGGTTGAGCA
1 ACAGCACGCAGGGGGGACTGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGG-CGGTTGAGCG
*
20222936 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
65 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20222994 CCCAGCTGAA
Statistics
Matches: 265, Mismatches: 49, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
195 91 0.34
196 170 0.64
197 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (194 bp):
ACAGCACGCAGGGGGGACTGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGGCGGTTGAGCGC
CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGACAGCAGGACCAGCAGCAAGATCG
Found at i:20223186 original size:26 final size:26
Alignment explanation
Indices: 20223150--20223202 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20223140 GTTGACTTAG
*
20223150 GCATAGGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20223176 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20223202 G
1 G
20223203 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20224045 original size:26 final size:26
Alignment explanation
Indices: 20223993--20224045 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20223983 GTTGGCTTAG
*
20223993 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20224019 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20224045 G
1 G
20224046 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20228611 original size:26 final size:26
Alignment explanation
Indices: 20228581--20228633 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20228571 GTTGACTTAG
20228581 GCATAC-GTAGTTCATCCCCAGCCTAA
1 GCATACAG-AGTTCATCCCCAGCCTAA
* *
20228607 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
20228633 G
1 G
20228634 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:20230832 original size:159 final size:159
Alignment explanation
Indices: 20230520--20231014 Score: 409
Period size: 159 Copynumber: 3.1 Consensus size: 159
20230510 AAGCATGCAT
* ** * * **
20230520 AGTTCATTCCCA-GTCTAAGATCAGACTGGACCTAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
1 AGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* ** * * * * * ** * **
20230584 GGGG-GGATCGGGCC-GATCCCTGGTTTGCGCATTCTACCTTTCCAGTCGGTTGAG-AGCCTGCA
65 GGGGTGGACCGGGCCAG-TCCCCAGCTTGTGCATTATACCTCTCCGGTCGACTCAGCA-CCCACA
* * * *
20230646 CCCCCGTTTCATGGGTTGGCTAAGGCATAAGG
128 CACTCATTTCATGGGTTGGCTTAGGCATAAGG
* *
20230678 AGTTCATTCCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCAG-AGGGATCGACAGGACGC
1 AGTTCATTCCATGTCTAAGACC-AGACCAGACCGAGGGTTGTGGCAGCA-GGATCGACAGCACGC
* * **
20230741 AGAGGG-GGACCGGGCC-GATCCCCAGCTTGCT-CATTATGCCTCTCCGGTCGGCTCAGTGCCCA
64 AG-GGGTGGACCGGGCCAG-TCCCCAGCTTG-TGCATTATACCTCTCCGGTCGACTCAGCACCCA
* *
20230803 CACACTCATTTCATGGGTTGACTTAGGCATACGG
126 CACACTCATTTCATGGGTTGGCTTAGGCATAAGG
* * * * *
20230837 AGTTCATTCC-TAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCAGGATTGACAGCACGTA
1 AGTTCATTCCAT-GTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * * * * *
20230901 GGGGTGGATCGGGCCAGTCCTCGGCTTGTGCATTCTACCTCTCCGGTCGACTGAGCACCCGCACG
65 GGGGTGGACCGGGCCAGTCCCCAGCTTGTGCATTATACCTCTCCGGTCGACTCAGCACCCACACA
* *
20230966 CTCGTTTCATGGGTTGGCTTAGCCATACA-G
130 CTCATTTCATGGGTTGGCTTAGGCATA-AGG
20230996 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
20231015 GATACGGAGT
Statistics
Matches: 272, Mismatches: 51, Indels: 27
0.78 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 53 0.19
159 212 0.78
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
GGGTGGACCGGGCCAGTCCCCAGCTTGTGCATTATACCTCTCCGGTCGACTCAGCACCCACACAC
TCATTTCATGGGTTGGCTTAGGCATAAGG
Found at i:20231024 original size:26 final size:26
Alignment explanation
Indices: 20230990--20231040 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20230980 TGGCTTAGCC
20230990 ATACAGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
*
20231016 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
20231041 ATCGAATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:20231690 original size:159 final size:160
Alignment explanation
Indices: 20231520--20231886 Score: 420
Period size: 159 Copynumber: 2.3 Consensus size: 160
20231510 CCCGCACACC
* *
20231520 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGG
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGG
**
20231584 GTTGTGGCAATGGGACTAG-CAGCACACAGAT-GGGGACAGGGTCGATCCCCGGCTTGCGCATTA
66 GTTGTGGCAACAGGA-TAGACAGCACACAG-TGGGGGACAGGGTCGATCCCCGGCTTGCGCATTA
* * *
20231647 TGCCTTTTCGATCGGCTCAGCACCCGAACGCT
129 TGCCTCTCCGATCGACTCAGCACCCGAACGCT
* * * * * * *
20231679 CGTTTCATGGGTCGACTTAGGCATACGGAGTTCTTTTCCA-GTCTAAG-ATCAGACCGGATCGAG
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTC-ATTCCATGTCTAAGCACCAGACCAGACCGAG
* * * * * * * *
20231742 GGTTGTGGCAGCAGGATCGATAGCACGCAGTGGGGGATAGGGTCGGTCCCTGGCTTGCGCATTCT
65 GGTTGTGGCAACAGGATAGACAGCACACAGTGGGGGACAGGGTCGATCCCCGGCTTGCGCATTAT
* **
20231807 GCCTCTCCGATCGACTGAGCACCCTCACGCT
130 GCCTCTCCGATCGACTCAGCACCCGAACGCT
* **
20231838 CATTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCA
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20231887 TATGGAGTTC
Statistics
Matches: 170, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
158 11 0.06
159 153 0.90
160 6 0.04
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (160 bp):
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGG
GTTGTGGCAACAGGATAGACAGCACACAGTGGGGGACAGGGTCGATCCCCGGCTTGCGCATTATG
CCTCTCCGATCGACTCAGCACCCGAACGCT
Found at i:20231908 original size:26 final size:26
Alignment explanation
Indices: 20231858--20231910 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20231848 GTTGGCTTAG
*
20231858 GCATATAGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCATATCTAA
*
20231884 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATATAGAGTTCATT-CCATATCTAA
20231910 G
1 G
20231911 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCATATCTAA
Found at i:20232091 original size:26 final size:26
Alignment explanation
Indices: 20232055--20232107 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20232045 GTTGGCTTAG
*
20232055 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
20232081 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
20232107 G
1 G
20232108 AGTTTTGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:20232094 original size:197 final size:197
Alignment explanation
Indices: 20231749--20232108 Score: 540
Period size: 197 Copynumber: 1.8 Consensus size: 197
20231739 GAGGGTTGTG
* * * * * *
20231749 GCAGCAGGATCGATAGCACGCAGTGGGGGATAGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGCAGTGGGGGACAGGGTCGATCCCCGGCTTACGCATTCTACCTCTC
* * * *
20231814 CGATCGACTGAGCACCCTCACGCTCATTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATG
66 CGACCGACTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
**
20231879 TCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGGCAATAGGAC
131 TCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGGCAATAGGAC
20231944 CA
196 CA
* *
20231946 GCAGTAGGATCGACAGCACGCAGTGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTACCTCTC
1 GCAGCAGGATCGACAGCACGCAGTGGGGGACAGGGTCGATCCCCGGCTTACGCATTCTACCTCTC
* * * *
20232011 TGGCCGACTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CGACCGACTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
* *
20232076 TCTAAGCATACAGAGTTCATTTCCAGTCTAAGA
131 TCTAAGCATACAGAGTTCATTCCCAATCTAAGA
20232109 GTTTTGAGCA
Statistics
Matches: 143, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
197 143 1.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (197 bp):
GCAGCAGGATCGACAGCACGCAGTGGGGGACAGGGTCGATCCCCGGCTTACGCATTCTACCTCTC
CGACCGACTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
TCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGGCAATAGGAC
CA
Found at i:20233324 original size:26 final size:26
Alignment explanation
Indices: 20233286--20233338 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20233276 GTGGACTTAG
*
20233286 GCATACAGCGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20233312 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20233338 G
1 G
20233339 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20233689 original size:159 final size:159
Alignment explanation
Indices: 20233526--20233814 Score: 364
Period size: 159 Copynumber: 1.8 Consensus size: 159
20233516 TGTGGTAACG
* * * **
20233526 GGATCGGCAGGACGCAAAGAGGGACCGGGCCAATCCCCGGCTTGCGCATTATGTCTCTCCAATCG
1 GGATCGACAGCACGCAAAGAGGGACCGGGCCAATCCCCGACTTGCGCATTATACCTCTCCAATCG
* *
20233591 GCTCAACGCCTGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA
66 GCTCAACGCCCGTACGCTCATTTCATGGGTTGACTTAGCCATACGGAGTTCATT-CCATGTCTAA
20233655 GATTGAATCGAACCAAGGGTTGCGGCAGCA
130 GATTGAATCGAACCAAGGGTTGCGGCAGCA
** * * * * * * **
20233685 GGATCGACAGCACGCAGGGGGGGACCGGGCCAATCCCTGACTTGTGTATTCTACCTCTTCGGTCG
1 GGATCGACAGCACGCAAAGAGGGACCGGGCCAATCCCCGACTTGCGCATTATACCTCTCCAATCG
* * * * *
20233750 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAG
66 GCTCAACGCCCGTACGCTCATTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCATGTCTAAG
20233815 GATACGGAGT
Statistics
Matches: 107, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
158 3 0.03
159 104 0.97
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GGATCGACAGCACGCAAAGAGGGACCGGGCCAATCCCCGACTTGCGCATTATACCTCTCCAATCG
GCTCAACGCCCGTACGCTCATTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCATGTCTAAG
ATTGAATCGAACCAAGGGTTGCGGCAGCA
Found at i:20233819 original size:26 final size:26
Alignment explanation
Indices: 20233790--20233840 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20233780 TGGCTTAGCC
20233790 ATACGGAGTTCATTCC-ATGTCTAAGG
1 ATACGGAGTTCATTCCTA-GTCTAAGG
20233816 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
20233841 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGG
Found at i:20234564 original size:159 final size:159
Alignment explanation
Indices: 20234187--20234574 Score: 390
Period size: 159 Copynumber: 2.4 Consensus size: 159
20234177 AAGCATACAT
* *
20234187 AGTTCACTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACATG-ACGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA-GCACGCA
* * ** * * ** ** *
20234251 G-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCTCCCGCACG
65 GAGGGGGACAGGGCCGATCCCCAACTTGCGCATTATGCCTCTCCGATAAGCTAAGCTCCCAAACA
* * * *
20234315 CCCATTTCATTGGTTGGCTTAGGCATAGGG
130 CCCATTTCATGGGTCGACTTAGGCATACGG
* ** * * ** * **
20234345 AGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAGTGGGACCGGTAGCACGC
1 AGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* *
20234408 AGAGGGGGACAGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGATAAGCTCAG-TGCCCAAA
64 AGAGGGGGACAGGGCCGATCCCCAACTTGCGCATTATGCCTCTCCGATAAGCTAAGCT-CCCAAA
* * *
20234472 CACTCGTTTCGTGGGTCGACTTAGGCATACGG
128 CACCCATTTCATGGGTCGACTTAGGCATACGG
* *
20234504 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC-A
20234569 GAGGGG
65 GAGGGG
20234575 ATCGGGCCTG
Statistics
Matches: 178, Mismatches: 44, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.03
158 45 0.25
159 116 0.65
160 11 0.06
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (159 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
AGGGGGACAGGGCCGATCCCCAACTTGCGCATTATGCCTCTCCGATAAGCTAAGCTCCCAAACAC
CCATTTCATGGGTCGACTTAGGCATACGG
Done.