Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 189 of 402
Found at i:20234705 original size:26 final size:26
Alignment explanation
Indices: 20234655--20234707 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20234645 GTTGGCTTAG
*
20234655 GCATATAGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCATATCTAA
*
20234681 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATATAGAGTTCATT-CCATATCTAA
20234707 G
1 G
20234708 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCATATCTAA
Found at i:20234888 original size:26 final size:26
Alignment explanation
Indices: 20234852--20234904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20234842 GTTGGCTTAG
*
20234852 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20234878 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20234904 G
1 G
20234905 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20234891 original size:197 final size:197
Alignment explanation
Indices: 20234548--20234905 Score: 515
Period size: 197 Copynumber: 1.8 Consensus size: 197
20234538 GGGTTGCGGT
20234548 AGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCTGTCCCTGGCTTGCGCATTCCACCTCTCCG
1 AGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCTGTCCCTGGCTTGCGCATTCCACCTCTCCG
* *
20234613 GACGACTGAGCACCCTCACACTCATTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTC
66 GACGACTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
**
20234678 TAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAAGGTTGCGGCAGCAGGACCA
131 TAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAAGGTTGCGGCAGCAGGACCA
20234743 AC
196 AC
* * * * **
20234745 AGCAGGATCGGCAGTACGC-AGTGGGGGATCGGGTC-GAT-CCTCGGCTTGCGCATTCTGCCTCT
1 AGCAGGATCGACAGCACGCAAG-AGGGGATCGGGCCTG-TCCCT-GGCTTGCGCATTCCACCTCT
* * * * * *
20234807 CTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
63 CCGGACGACTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
*
20234872 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
128 GTCTAAGCATACAGAGTTCATTCCCAATCTAAGA
20234906 GTTTGAGCCA
Statistics
Matches: 141, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
196 6 0.04
197 135 0.96
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (197 bp):
AGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCTGTCCCTGGCTTGCGCATTCCACCTCTCCG
GACGACTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
TAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAAGGTTGCGGCAGCAGGACCA
AC
Found at i:20235351 original size:159 final size:157
Alignment explanation
Indices: 20235064--20235366 Score: 385
Period size: 159 Copynumber: 1.9 Consensus size: 157
20235054 AGATCGAATT
* *
20235064 GAGGGTTGTGGTAGCAGGATCGACAGCACATAAAGGGGACCGGGCCGATCCCCGACTTGCGTATT
1 GAGGGTTGTGGTAGCAGGACCGACAGCACATAAAGGGGACCGGGCCGATCCCCGACTTGCGCATT
* * * *
20235129 GTTCCTCTCTGACCGGTTGAGCGCCCGTACACCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGTT
66 CTACCTCTCTGACCGGCTGAGCGCCCG-ACACCCGTTTCGTAGGTTGGCTTAGGCATACGGAGTT
*
20235194 CATTCCGTGTCTAATCCCCAGCCAGACC
130 CATTCCATGTCTAATCCCCAGCCAGACC
* * * * * * * *
20235222 GAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGGGGGACTGGGTCGATCCTCGGCTTGTGCAT
1 GAGGGTTGTGGTAGCAGGACCGACAGCACATA-AAGGGGACCGGGCCGATCCCCGACTTGCGCAT
* * *
20235287 TCTACCTCTCTGGCCGGCTGAGCGCCC-ACACGCTCGTTTCGTGGGTTTGG-TTAGGCGTACGGA
65 TCTACCTCTCTGACCGGCTGAGCGCCCGACAC-C-CGTTTCGTAGG-TTGGCTTAGGCATACGGA
20235350 GTTCATTCCATGTCTAA
127 GTTCATTCCATGTCTAA
20235367 GCATACAGAG
Statistics
Matches: 123, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
157 4 0.03
158 30 0.24
159 85 0.69
160 4 0.03
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
GAGGGTTGTGGTAGCAGGACCGACAGCACATAAAGGGGACCGGGCCGATCCCCGACTTGCGCATT
CTACCTCTCTGACCGGCTGAGCGCCCGACACCCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAATCCCCAGCCAGACC
Found at i:20236469 original size:159 final size:159
Alignment explanation
Indices: 20236308--20236610 Score: 349
Period size: 159 Copynumber: 1.9 Consensus size: 159
20236298 ATTGGACTGA
* * * *
20236308 GGGTTGTGGCAGCAGGATCGACAGGACGCAAAGGGGGACTGGGCCGATCCCCGG-TATACGCTTT
1 GGGTTGCGGCAGCAGGATCGACAGCACGC-AAGGGGGACCGGGCCGATCCCCGGCT-TACGCATT
** * ** * *
20236372 ATGTCTCTCCAATCGGTTCAGCGCCCGTACGCACATTTCATGGGTTGACTTAGGCATACGGAGTT
64 ATACCTCTCCAACCGACTCAGCGCCCGCACGCACATTTCATGGGTTGACTTAGCCATACGGAGTT
20236437 CATTCC-TAGTCTAAGATTGGATCGAACCGAG
129 CATTCCAT-GTCTAAGATTGGATCGAACCGAG
* * * ** * *
20236468 GGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGGGTTGATCCCCGGCTTGCGCATTGT
1 GGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTAT
** * ** *
20236533 ACCTCTCCGGCCGACTGAGCGCCCGCACGTTCATTTCATGGGTTGGCTTAGCCATACGGAGTTCA
66 ACCTCTCCAACCGACTCAGCGCCCGCACGCACATTTCATGGGTTGACTTAGCCATACGGAGTTCA
20236598 TTCCATGTCTAAG
131 TTCCATGTCTAAG
20236611 GATATGGAGT
Statistics
Matches: 117, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
159 90 0.77
160 27 0.23
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTAT
ACCTCTCCAACCGACTCAGCGCCCGCACGCACATTTCATGGGTTGACTTAGCCATACGGAGTTCA
TTCCATGTCTAAGATTGGATCGAACCGAG
Found at i:20237010 original size:158 final size:157
Alignment explanation
Indices: 20236695--20237441 Score: 564
Period size: 158 Copynumber: 4.7 Consensus size: 157
20236685 CAGCATACAG
* * * * * * * *
20236695 GGGGAGACCGGGCCGATCCTC-GGTGTACGCATTCTACGTCTCCGACCAGCTAAACGCCCGCACG
1 GGGG-GACCGGGCCGATCCCCAGCT-TGCGCATTCTACCTCTCCG-GCGGCTGAGCGCCCGCACG
* * * * * * *
20236759 CTCGTTTCGTGGGTTGGCTAAGGCATAGGGGGTTCATTCCATGTCTAAG-CCCCAGTCGGATCGA
63 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCCAGCCGGACCGA
* *
20236823 GGGTTGTGGCAGCAGGATTGGCAAG-ACGCA
128 GGGTTGTGGCAGCAGGATCGAC-AGCACGCA
* * * * * * *
20236853 GAGGGGATCGGGTCGATCCCCAGTTTGCGCATTTTACCTCTCTGGCAGGCTGAACGCCTGCACGC
1 G-GGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGC-GGCTGAGCGCCCGCACGC
* **
20236918 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGATCGGA-CCGGACCGAG
64 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCCAGCCGGACCGAG
*
20236982 GGTT-TCGGCAGCAAGATCGACAGCACGCA
129 GGTTGT-GGCAGCAGGATCGACAGCACGCA
** * * * * *
20237011 GGTCAGACCGGGCCAATTCCTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGC
1 GG-GGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGG-CGGCTGAGCGCCCGCACGC
* * * * * *
20237076 CCGTTTCGTGGGTTGGCTTACGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACCGAA
64 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCCAGCCGGACCGAG
** *
20237140 GGTTGTGGCAGTGGGA-CTGACAGCACGTAGA
129 GGTTGTGGCAGCAGGATC-GACAGCACG--CA
* * * * * * * * *** * *
20237171 GGGGGATCGGGCTGATCCCCGGCTTGCG-ATTATGCCTCTCCAGCTGGCTCAGCACGTACTCACT
1 GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGC-GGCTGAGCGCCCGCACGCT
* * * * ***
20237235 CATTTCATGGGGTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATTGGA-CCGGACCGAG
65 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCCCAGCCGGACCGAG
** * *
20237298 GGTTGCAGAAGCAGGATCGACAGTACGCA
129 GGTTGTGGCAGCAGGATCGACAGCACGCA
* * ** * * *
20237327 GGGGGACCCGACCGATCCCC-GACTTATGCATTCTACCTCTCCTGTCGGCTGAGCACCCGGACGC
1 GGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTACCTCTCC-GGCGGCTGAGCGCCCGCACGC
**
20237391 TCAATTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC
64 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATC
20237442 AGACTGAATC
Statistics
Matches: 457, Mismatches: 112, Indels: 41
0.75 0.18 0.07
Matches are distributed among these distances:
155 1 0.00
156 21 0.05
157 77 0.17
158 323 0.71
159 32 0.07
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCCAGCCGGACCGAGGG
TTGTGGCAGCAGGATCGACAGCACGCA
Found at i:20237281 original size:316 final size:315
Alignment explanation
Indices: 20236720--20237438 Score: 784
Period size: 316 Copynumber: 2.3 Consensus size: 315
20236710 ATCCTCGGTG
* * * * * *
20236720 TACGCATTCTACGTCTCCGACCAGCTAAACGCCCGCACGCTCGTTTCGTGGGTTGGCTAAGGCAT
1 TACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * * * * *
20236785 AGGGGGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGATTGGCAAGAC
66 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAGGACTGACAAGAC
* * ** * * *
20236850 GCAGAGGGGATCGGGTCGATCCCCAGTTTGCGCATTTTACCTCTCTGGCAGGCTGAACGCCTGCA
131 GCAGAGGGGATCGGGTCGATCCCCAGCTTGCGCATTATACCTCTCCAGCAGGCTCAACACCTACA
* * * * *
20236915 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGATCGGACCGGACCG
196 CACTCATTTCATGGGGTGACTTAGGCATACAGAGTTCAATCCATGTCTAAGATCGGACCGGACCG
* * * * * *
20236980 AGGGTTTCGGCAGCAAGATCGACAGCACGCAGGTCAGACCGGGCCAATTCCTAG-CT
261 AGGGTTGCAGAAGCAAGATCGACAGCACGCAGG-CAGACCCGACCAA-TCCCAGACT
* * * * *
20237036 TGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTACGCAT
1 TACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
**
20237101 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGTGGGACTGAC-AGCA
66 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAGGACTGACAAG-A
* * * * * *
20237165 CGTAGAGGGGGATCGGG-CTGATCCCCGGCTTGCG-ATTATGCCTCTCCAGCTGGCTCAGCACGT
130 CGCAGA-GGGGATCGGGTC-GATCCCCAGCTTGCGCATTATACCTCTCCAGCAGGCTCAACACCT
* * *
20237228 ACTCACTCATTTCATGGGGTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCGG
193 ACACACTCATTTCATGGGGTGACTTAGGCATACAGAGTTCAAT-CCATGTCTAAGATCGGACCGG
* * ** * *
20237292 ACCGAGGGTTGCAGAAGCAGGATCGACAGTACGCAGGGGGACCCGACCGATCCCCGACT
257 ACCGAGGGTTGCAGAAGCAAGATCGACAGCACGCAGGCAGACCCGACCAATCCCAGACT
* * * * * ** *
20237351 TATGCATTCTACCTCTCCTGTCGGCTGAGCACCCGGACGCTCAATTCATGGGTTGGCTTAGGCAT
1 TACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
*
20237416 ACGGAGTTCATTCCCA-GTCTAAG
66 AGGGAGTTCATT-CCATGTCTAAG
20237439 ATCAGACTGA
Statistics
Matches: 332, Mismatches: 65, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
314 4 0.01
315 83 0.25
316 219 0.66
317 26 0.08
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (315 bp):
TACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAGGACTGACAAGAC
GCAGAGGGGATCGGGTCGATCCCCAGCTTGCGCATTATACCTCTCCAGCAGGCTCAACACCTACA
CACTCATTTCATGGGGTGACTTAGGCATACAGAGTTCAATCCATGTCTAAGATCGGACCGGACCG
AGGGTTGCAGAAGCAAGATCGACAGCACGCAGGCAGACCCGACCAATCCCAGACT
Found at i:20237803 original size:26 final size:26
Alignment explanation
Indices: 20237767--20237819 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20237757 GTTGACTTAG
*
20237767 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
20237793 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20237819 G
1 G
20237820 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20238219 original size:157 final size:155
Alignment explanation
Indices: 20237793--20238292 Score: 426
Period size: 157 Copynumber: 3.2 Consensus size: 155
20237783 CTCAGTCTAA
* *
20237793 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGA-TCGAGGGTTACAG-AGCAAGAT-AG
1 GCATAC-GAGTTCATT-CCATGTCTAAGATCAGACCAGACT-GAGGGTTGCAGCAG-AGGATCA-
* * * * *
20237854 ACAGCACGTAAGGGGGA-CTAGGCTGATCCCCGGCTTGCGCATTCTGCCT-TTCCGACTGGCTTA
61 ACAGCACGCAGGGGGGATC-GGGCTGATCCCCGGCTTGCGCATTCTGCCTCTT-CGACCGGCTCA
*
20237917 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
124 GCG-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** ** **
20237950 GCATAGGGAGTTCGTTCCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCA-ACGAGATCGG
1 GCATA-CGAGTTCATTCCATGTCTAAG-ATCAGACCAGACTGAGGGTTGCAGCAGA-G-GATCAA
* * * * *
20238013 CAGCACACAGAGGGGGATCGAGCTAATCCCTGGCTTGCGCATTAC-GCCTCTTCAACCGGCTCAG
62 CAGCACGCAG-GGGGGATCGGGCTGATCCCCGGCTTGCGCATT-CTGCCTCTTCGACCGGCTCAG
* * * *
20238077 CGCTCGCACGCTTGTTTCATGGGTTGACTTAT
125 CGC-CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
20238109 GCATACGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGTAGGATCAACA
1 GCATACGAGTTCATT-CCATGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAG-AGGATCAACA
* * * * * * *
20238173 GCATGCAGGGGGGATCGGGCTGATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCC
64 GCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTCAGCGCC
* *
20238238 TGCACGCTCATTTCGTGGCTTGGCTTAG
129 -GCACGCTCGTTTCGTGGGTTGGCTTAG
20238266 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACG-AGTTCATTCCATGTCTAAG
20238293 CATATGGAGT
Statistics
Matches: 266, Mismatches: 56, Indels: 41
0.73 0.15 0.11
Matches are distributed among these distances:
156 6 0.02
157 110 0.41
158 72 0.27
159 73 0.27
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (155 bp):
GCATACGAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGAGGATCAACAGC
ACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTCAGCGCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20238825 original size:26 final size:26
Alignment explanation
Indices: 20238796--20238848 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20238786 GTTGACTTAG
20238796 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20238822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20238848 G
1 G
20238849 ATCAAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20239574 original size:26 final size:26
Alignment explanation
Indices: 20239538--20239590 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20239528 GTTGACTTAG
*
20239538 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20239564 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20239590 G
1 G
20239591 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20240044 original size:26 final size:26
Alignment explanation
Indices: 20240015--20240071 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20240005 GTGTGTTGGC
*
20240015 TTAAGCATACGGAGTTTATTCCATGT
1 TTAAGCATACGGAGTTCATTCCATGT
*
20240041 TTAAGCATACGGAGTTCATTTCATGT
1 TTAAGCATACGGAGTTCATTCCATGT
*
20240067 CTAAG
1 TTAAG
20240072 ATCGAACTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (26 bp):
TTAAGCATACGGAGTTCATTCCATGT
Found at i:20240796 original size:27 final size:26
Alignment explanation
Indices: 20240747--20240800 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
20240737 TTGAACTTAG
20240747 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20240773 GCATACAGGAGTTCAAT-CCTAGTCTAA
1 GCATACA-GAGTTC-ATCCCCAGTCTAA
20240800 G
1 G
20240801 ATCGGACAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 7 0.28
27 16 0.64
28 2 0.08
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20241282 original size:26 final size:26
Alignment explanation
Indices: 20241252--20241301 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20241242 GACTTAGGCA
20241252 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
*
20241278 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
20241302 ATACGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:20241683 original size:502 final size:498
Alignment explanation
Indices: 20240188--20242001 Score: 1683
Period size: 502 Copynumber: 3.6 Consensus size: 498
20240178 CCTCTCCGGT
* * * *
20240188 CGGCTGAGCGCCTGCACGCTCATTTCATAGGTTGACGTAGGCATATAGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
* * * ** *
20240253 AGCATACGGAGTTCTTTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGACAGCAGGATCGGT
* * * * * *
20240318 AGCACGCAGGGGGGA-TGGATCGATCCCCGTCTTGCACATTCTGCCTCTCTGGCCGGCTGAGTGC
130 AGCACACAGGGGGGACCGGATCGAT-CCCGACTTGCGCATTCTGCCTCTC-GGCCGGCTAAATGC
* * * *
20240382 CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCTGCCTAAGCCCCAGTTG
193 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
*
20240447 GATCGAGGGTTGTGGCAGCGGGACCTG-TAGCATGCAAAGGGGGACCAGGCCGATCCCC-AGCTT
258 GATCGAGGGTTGTGGCAGCGGGACC-GACAGCATGCAAAGGGGGACC-GGCCGATCCCCGA-CTT
* * * * * * * * *
20240510 GTGCATTATGCCTCTCCGACGGGTTGAGA-GCCTGCACGCTTGTTTCGTAGGCTGGCTTAGGCAT
320 GCGCATTATGCCTCTCCGACCGGCTCA-ACGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCAT
* * ** * * * *
20240574 ACGGAGTTCATTCCAATGTCTACGCCCAG-CTGGACCG-GGGTTGTGCCAGAGGACACAGTGGGA
384 ACGGAGTTCATTCCCA-GTCTAAGATCGGACTGGA-CGAAGGTT-T--C---GG---TAGTAGGA
* ** * * ** * * * *
20240637 TCGATAGCATTGCAGAGGGTGATCGGGCTGAACCTCGACCTGCGCATTATGCTCTCGGCTGACTC
438 TCGACAGCACAGCAGAGGG-GACCGGGCCGGTCCTTGGCTTGCGCATTCTGC-CT---CT--C-C
*
20240702 TCGAC
495 -AGAC
* * * * *
20240707 CGACAGAGCTCCCG-ACGCTCGTTTCGTGGGTTGAACTTAGGCATACAGAGTTCATCCCCAGTCT
1 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG-ACTTAGGCATACAGAGTTCATCCCCAGTCT
* * * *
20240771 AAGCATACAGGAGTTCAATCCTAGTCTAAGATCGGACAGACCGAGGGTTTGGCGATAGCAGGATC
65 AAGCATAC-GGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGG-TT-GCGACAGCAGGATC
* * * * * ** *
20240836 GGTAGCAACATCAGGGCGGATCGG-GCGAT-CCGACTTGTGGC-TTCTAGCATC-CGGTTGG-TT
127 GGTAGC-ACA-CAGGGGGGACCGGATCGATCCCGACTTG-CGCATTCT-GCCTCTCGGCCGGCTA
* * * * * * *
20240896 GAGGCACCCGTACGTCCATTTCATGGGTTGGGTTAGGCATAGGGAGCTCATTCCATGTCTAAGCC
188 AATG--CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * ** * *
20240961 CCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACACAGAGGGGGACCGGCCTAATCCCC
251 CCAGCTGGATCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAAAGGGGGACCGGCC-GATCCCC
* * * *
20241026 GACTTGCGCATTATGCCTCTTCGGTCC-GCTCAACGACCGCACGCTCGTTTCATGGGTTGACTTA
315 GACTTGCGCATTATGCCTC-TCCGACCGGCTCAACGCCCGCACGCTTGTTTCATGGGTTGACTTA
* * * * * * * *
20241090 TGCATACGAAGTTCATTCCCAGTGTAAGATCGAATTGGACCAAGGGTTACGGTAGCAGGATCGAC
379 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACGAA-GGTTTCGGTAGTAGGATCGAC
* *
20241155 AGCACA-TAGGGGGGACCGGGCCGGTCCTTGGCTTGCGCATTCTGCCTCTCCAG-C
443 AGCACAGCAGAGGGGACCGGGCCGGTCCTTGGCTTGCGCATTCTGCCTCTCCAGAC
* *
20241209 CGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
* * *
20241274 AGCTTACGGAGTTCATTCCCAGTCTAAGATACGGACCAGACCGAGGGTTGCGACAGTAGGATCGG
66 AGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGA-CAGACCGAGGGTTGCGACAGCAGGATCGG
* * * *
20241339 TAACACACTGGGGGGACCAGATCGATCCTCGACTTGCGCATTCTGCCTCTTCGACCGGCTAAATG
129 TAGCACACAGGGGGGACCGGATCGATCC-CGACTTGCGCATTCTGCCTC-TCGGCCGGCTAAATG
* *
20241404 CCCGTACGCCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
192 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
* * ** *
20241469 GGATCGAGGGTTGTGGCAACGGGACCGATAGCATGCAAAAAGGGACCGGGTCGATCCCCGACTTG
257 GGATCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAAAGGGGGACC-GGCCGATCCCCGACTTG
* ** *
20241534 CGCATTATGCCTCTCTGACCGGCTCAACGCCCAAACGCTTGTTTTATGGGTTGACTTAGGCATAC
321 CGCATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAC
* * *
20241599 GGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAAGGTTTCGGTAGTAGGATCGACAACA-AG
386 GGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CGAAGGTTTCGGTAGTAGGATCGACAGCACAG
* * * * *
20241663 CAGAAGGGACCAGGCCGGTCCTTGGCTTACGGATTCTGCCTCT-CTGAC
450 CAGAGGGGACCGGGCCGGTCCTTGGCTTGCGCATTCTGCCTCTCCAGAC
* * * **
20241711 CGGCTGGGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTTCAT--CCATGTC
1 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAG-TTCATCCCCA-GTC
20241774 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGC-AGCAGCAGGATC
64 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACA-GACCGAGGGTTGCGA-CAGCAGGATC
* * * * * *
20241838 AGTAGCACGCAGGGGGGACCGGGTTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAG
127 GGTAGCACACAGGGGGGACCGGATCGATCCC-GACTTGCGCATTCTGCCTCT-CGGCCGGCTAAA
** * * * * * *
20241903 CACCCACACGCTCGTTTCGTGGGTCGGCTTAGGCATATGGTGTTCATTCCAT-TCTAAGCCCCA-
190 TGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
20241966 ATCAGATCGAGGGTTGTGGCAGCAGGACCGACAGCA
255 CT-GGATCGAGGGTTGTGGCAGCGGGACCGACAGCA
20242002 GGATTGACAG
Statistics
Matches: 1061, Mismatches: 193, Indels: 101
0.78 0.14 0.07
Matches are distributed among these distances:
499 10 0.01
500 52 0.05
501 174 0.16
502 388 0.37
503 44 0.04
504 4 0.00
505 1 0.00
507 2 0.00
510 2 0.00
511 24 0.02
512 5 0.00
513 13 0.01
516 2 0.00
518 16 0.02
519 59 0.06
520 41 0.04
521 194 0.18
522 16 0.02
523 12 0.01
524 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (498 bp):
CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGCGACAGCAGGATCGGTA
GCACACAGGGGGGACCGGATCGATCCCGACTTGCGCATTCTGCCTCTCGGCCGGCTAAATGCCCG
CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAT
CGAGGGTTGTGGCAGCGGGACCGACAGCATGCAAAGGGGGACCGGCCGATCCCCGACTTGCGCAT
TATGCCTCTCCGACCGGCTCAACGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACTGGACGAAGGTTTCGGTAGTAGGATCGACAGCACAGCAGAGG
GGACCGGGCCGGTCCTTGGCTTGCGCATTCTGCCTCTCCAGAC
Found at i:20242147 original size:26 final size:26
Alignment explanation
Indices: 20242117--20242169 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20242107 GTTGACTTAG
*
20242117 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
20242143 GCATACGGAGTTCATCCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
20242169 G
1 G
20242170 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:20242458 original size:159 final size:157
Alignment explanation
Indices: 20242184--20242476 Score: 397
Period size: 159 Copynumber: 1.9 Consensus size: 157
20242174 GACTGGACTG
* * * *
20242184 AGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCCGACTTGCGCATTCT
1 AGGGTTGCGGTAGCAGGACCGGCAGCACGCAGAGGGGACCGGGCCGATCCCGACTTGCGCATTAT
* * * * *
20242249 GACTCTCTGACCGGCTGAGCGCCCGCACACCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
66 GACTCTCCGACCGGCTCAGCACCCGCACACCTGTTTCGTGGGTTGACTTAGGCATACGGAGTCCA
20242314 TTCCATGTCTAAGCCCCAGCCGGACCA
131 TTCCATGTCTAAGCCCCAGCCGGACCA
* * ** *
20242341 AGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAAGGGGATTGGGCCGATCCCCGGCTTGCGCATT
1 AGGGTTGCGGTAGCAGGACCGGCAGCACGCAG-AGGGGACCGGGCCGAT-CCCGACTTGCGCATT
* * * * *
20242406 ATGCCTCTCCGATCGGCTCAGTACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTC
64 ATGACTCTCCGACCGGCTCAGCACCCGCACACCTGTTTCGTGGGTTGACTTAGGCATACGGAGTC
20242471 CATTCC
129 CATTCC
20242477 CAGTATAAGA
Statistics
Matches: 115, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
157 28 0.24
158 13 0.11
159 74 0.64
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.22
Consensus pattern (157 bp):
AGGGTTGCGGTAGCAGGACCGGCAGCACGCAGAGGGGACCGGGCCGATCCCGACTTGCGCATTAT
GACTCTCCGACCGGCTCAGCACCCGCACACCTGTTTCGTGGGTTGACTTAGGCATACGGAGTCCA
TTCCATGTCTAAGCCCCAGCCGGACCA
Found at i:20242529 original size:159 final size:156
Alignment explanation
Indices: 20242143--20243273 Score: 470
Period size: 158 Copynumber: 7.2 Consensus size: 156
20242133 CCCAGTCTAA
* *
20242143 GCATACGGAGTTCA-TCCACAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCC-CAGTCTAAGATCAG-CCGGACTGAGGGTTGCGGTAGCAGGATCGGC
* * * * *
20242207 AGCACGCAGGGGGGACCGGGCCGATCCCGACTTGCGCATTCTGACTCTCTGACCGGCTGAGCGCC
64 AGCACGCAGGGGGGATCGGGCCGATCCCGACTTGCGCATTATGACTCTCCGACCGGCTCAGCACC
*
20242272 CGCACACCTGTTTCGTGGGTTGGCTTAG
129 CGCACACCTGTTTCGTGGGTTGACTTAG
** ** * * *
20242300 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAGCGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGCCGGACTGAGGGTTGCGGTAGCAGGATCGGC
* * * * * *
20242364 AGCACGCAGAAGGGGATTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTA
64 AGCACGCAG-GGGGGATCGGGCCGAT-CCCGACTTGCGCATTATGACTCTCCGACCGGCTCAGCA
* *
20242429 CCCGCACGCTTGTTTCGTGGGTTGACTTAG
127 CCCGCACACCTGTTTCGTGGGTTGACTTAG
* * * * * * * *
20242459 GCATACGGAGTCCATTCCCAGTATAAGATCAGTCCAGATTGAGGGTTCCGATAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCGGACTGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * ** * *
20242524 ACACGCAGGGGGGATCGGGCCGGTCCTCGACTTACACATTCT-ACCTCTCGGGCCAACTGAGCGC
65 GCACGCAGGGGGGATCGGGCCGATCC-CGACTTGCGCATTATGA-CTCTCCGACCGGCTCAGCAC
* * * *
20242588 CTGCAC-GCTCGTTTGGTGGGTTGGCTTAG
128 CCGCACACCT-GTTTCGTGGGTTGACTTAG
** * * * * * * *** *
20242617 GCATACGGAGTTCACACCC--TCATAAAAT-TG--GCATTGGCATGGTAGAAATATG-AAGAT-G
1 GCATACGGAGTTCATTCCCAGTC-TAAGATCAGCCGGACT-G-AGGGTTGCGGTA-GCAGGATCG
* * ****** * * ** * ** * * *** *
20242675 TGCTTGAAC-CTACCTACCACCCGTTCGATCCCTGACTTGCACATCCTGTCTCTCTGGTTGGCTG
62 -GC-AGCACGC-AGGGGGGATCGGGCCGATCCC-GACTTGCGCATTATGACTCTCCGACCGGCTC
* *
20242739 AGCCCCCGCAC-GCTCGTTTCGTGGGTTGACTTAG
123 AGCACCCGCACACCT-GTTTCGTGGGTTGACTTAG
* * * * * * *
20242773 GCATACGGAGTTCATTTCCAGTCTAATATCAGATCGGACCGAGGGTTGCGGCAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCGGACTGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * * * * * ***
20242838 GCACACTGGGGGGACCGGGTCGATCTCTGACTTGTGCATTCTGCCTCTTCGACCGACTGAGTGTC
65 GCACGCAGGGGGGATCGGGCCGATC-CCGACTTGCGCATTATGACTCTCCGACCGGCTCAGCACC
* ** *
20242903 CGCACCCCCATTTCGTGGGTTGGCTTAG
129 CGCACACCTGTTTCGTGGGTTGACTTAG
* ** * * * * * *
20242931 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGATTGAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGCCGGACTGAGGGTTGCGGTAGCAGGATC-GG
* * * * * * *
20242994 CAAG-ACGCAAAGGGGGACCGGGCCGGTCCCCGGCTTGTGCATTATGCCTCTCCG-CTAGG-TCA
63 C-AGCACGC-AGGGGGGATCGGGCCGAT-CCCGACTTGCGCATTATGACTCTCCGAC-CGGCTCA
* * * **
20243056 GCGCCCGCAC-GCTCATTTCACGGGTTGACTTAG
124 GCACCCGCACACCT-GTTTCGTGGGTTGACTTAG
* * * * * *
20243089 GTATATGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGTATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCGGACTGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * * * * * *
20243154 GCATGCAAGGAGGGA-CGGGCTGATCCCTGGCTTGTGCATTTTGCCTTTCTGGCCGGCTGAGCGC
65 GCACGC-AGGGGGGATCGGGCCGATCCC-GACTTGCGCATTATGACTCTCCGACCGGCTCAGCAC
* * *
20243218 CCGCAC-GCTCGTTTCATGGGTTGGCTTAG
128 CCGCACACCT-GTTTCGTGGGTTGACTTAG
20243247 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
20243274 CATATGGAGT
Statistics
Matches: 724, Mismatches: 204, Indels: 91
0.71 0.20 0.09
Matches are distributed among these distances:
153 3 0.00
154 2 0.00
155 15 0.02
156 87 0.12
157 109 0.15
158 335 0.46
159 165 0.23
160 6 0.01
161 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGCCGGACTGAGGGTTGCGGTAGCAGGATCGGCAG
CACGCAGGGGGGATCGGGCCGATCCCGACTTGCGCATTATGACTCTCCGACCGGCTCAGCACCCG
CACACCTGTTTCGTGGGTTGACTTAG
Found at i:20243277 original size:26 final size:26
Alignment explanation
Indices: 20243247--20243299 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20243237 GTTGGCTTAG
20243247 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20243273 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20243299 G
1 G
20243300 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20243978 original size:26 final size:26
Alignment explanation
Indices: 20243941--20243993 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20243931 GTTGGCTTAG
*
20243941 GCATACGAAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCACTCCCA-GTCTAA
20243967 GCATAC-AGAGTTCACTCCCAGTCTAA
1 GCATACGA-AGTTCACTCCCAGTCTAA
20243993 G
1 G
20243994 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 19 0.79
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:20244675 original size:28 final size:26
Alignment explanation
Indices: 20244643--20244697 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20244633 GGTGACTTAG
*
20244643 GCATACGGATTTCCATTCCCCAGTCTAA
1 GCATACGGAGTT-CATT-CCCAGTCTAA
*
20244671 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20244697 G
1 G
20244698 ATCGGGCCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 11 0.44
27 4 0.16
28 10 0.40
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20245795 original size:26 final size:26
Alignment explanation
Indices: 20245743--20245795 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20245733 GTTGGCTTAG
*
20245743 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
20245769 GCATGCGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
20245795 G
1 G
20245796 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:20247213 original size:316 final size:314
Alignment explanation
Indices: 20246490--20247307 Score: 868
Period size: 316 Copynumber: 2.6 Consensus size: 314
20246480 CCTAGTCTAA
* * *
20246490 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCTGACCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
* * *
20246555 GCACGC-AGAGGGGACCGGGCCGATCCCCGACTTA-TGCATTCTGCCTCTCTGGCTGGCTGAGCG
66 GCACGCAAG-GGGGACC-GGCCGATCCCCGGCTTACT-CATTCTGCCTCTC-CGCCGGCTGAGCG
* * * * * * *
20246618 CCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGATT-ATTCCATGTCTAAGCCCCAGT
127 CCCGCACGCTCGTTTCATTGGTTCGCTTAGGCATACGGAG-TTCATTCCATGTCTAAGCCCCAGT
* * *
20246682 CGGACCGAGGGTTGTGACAACGGGACCGGTAGCACGTAAAGGGGGATCGGGCCAATCCTCGACTT
191 CGGACCAAGGGTTGTGACAACGGGACCGGCAGCACGCAAAGGGGGATCGGGCCAATCCTCGACTT
** * *
20246747 GCACATTATGCCTCTTCGATTGGCTCAGCGTCCGTATGCTCGTTTCGTGGGTTGACTTAG
256 GCACATTATGCCTCTTCGATCAGCTCAGCCTCCG-ATGCTCGTTTCATGGGTTGACTTAG
* * * * * *
20246807 GTTTATG--GAGTTCATTCCCAATCTAATATCAGACCAGACTGGGGGTTGCGACAGCAGGATCGA
1 G--CATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
20246870 CAGCACGTAGGGGGGATCGGACCGATCCTCGGCTTACTCATTC-GACCTTTCCAGTCGGCTGAGC
64 TAGCACGCAAGGGGGACCGG-CCGATCCCCGGCTTACTCATTCTG-CCTCTCC-GCCGGCTGAGC
* * *
20246934 ACTCGCACGCTCGTTTCATTGGTTCGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGT
126 GCCCGCACGCTCGTTTCATTGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * ** * *
20246999 CGGACCAAGGGTTGTTG-TAGCGGGACCGGCAGCACGCGGA-GGGGATCGGGTCGATCC-CTGAC
191 CGGACCAAGGGTTG-TGACAACGGGACCGGCAGCACGCAAAGGGGGATCGGGCCAATCCTC-GAC
** * *
20247061 TTGTGCATTATGCCTCTTCGGTCAGCTCAGCACTCAC-ATGCTTGTTTCATGGGTTGACTTAG
254 TTGCACATTATGCCTCTTCGATCAGCTCAGC-CTC-CGATGCTCGTTTCATGGGTTGACTTAG
** * * ** *
20247123 GCATGCAGAGTTCATTTTCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGTAGGATCGATA
1 GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * *
20247188 GCACACAAGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCC
66 GCACGCAAGGGGGACC-GGCCGATCCCCGGCTTACTCATTCTGCCTCTCCG-CCGGCTGAGCGCC
*
20247253 CGCACGCTCGTTTCA-TGTGTTCGCTTAGGCAT-CAGAGTTCATTCCATGTCTAAGC
129 CGCACGCTCGTTTCATTG-GTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20247308 ATACAGAGTT
Statistics
Matches: 409, Mismatches: 74, Indels: 38
0.79 0.14 0.07
Matches are distributed among these distances:
314 3 0.01
315 25 0.06
316 193 0.47
317 181 0.44
318 5 0.01
319 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (314 bp):
GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAAGGGGGACCGGCCGATCCCCGGCTTACTCATTCTGCCTCTCCGCCGGCTGAGCGCCCG
CACGCTCGTTTCATTGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
CAAGGGTTGTGACAACGGGACCGGCAGCACGCAAAGGGGGATCGGGCCAATCCTCGACTTGCACA
TTATGCCTCTTCGATCAGCTCAGCCTCCGATGCTCGTTTCATGGGTTGACTTAG
Found at i:20247331 original size:26 final size:25
Alignment explanation
Indices: 20247281--20247336 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
20247271 GTTCGCTTAG
*
20247281 GCATCAGAGTTCATTCCATGTCTAA
1 GCATCAGAGTTCATTCCATGCCTAA
20247306 GCATACAGAGTTCATTTCCA-GCCTAA
1 GCAT-CAGAGTTCA-TTCCATGCCTAA
20247332 G-ATCA
1 GCATCA
20247337 AACCGGACTG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 2 0.07
25 6 0.21
26 15 0.54
27 5 0.18
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (25 bp):
GCATCAGAGTTCATTCCATGCCTAA
Found at i:20247710 original size:26 final size:26
Alignment explanation
Indices: 20247660--20247712 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20247650 GTTGACATAG
* *
20247660 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAATCTAA
* *
20247686 GCATATGGAGTTCATGCACAATCTAA
1 GCATACGGAGTTCATCCACAATCTAA
20247712 G
1 G
20247713 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAATCTAA
Found at i:20248196 original size:26 final size:26
Alignment explanation
Indices: 20248160--20248212 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20248150 GTTAGCTTAG
20248160 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20248186 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20248212 G
1 G
20248213 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20248923 original size:26 final size:26
Alignment explanation
Indices: 20248894--20248972 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20248884 GTTGACCCAG
* *
20248894 GCATACGGAGTTCATCCCCATTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
20248920 GCATATGGAGTTCATCCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
* *
20248946 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
20248972 G
1 G
20248973 ATCGGATCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:20256981 original size:26 final size:26
Alignment explanation
Indices: 20256931--20256981 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20256921 TTGGCTTAGG
*
20256931 CATACAGAGTTCATTCCATGTCTAAC
1 CATACAGAGTTCATTCCATGCCTAAC
*
20256957 CATACGGAGTTCATTCCCA-GCCTAA
1 CATACAGAGTTCATT-CCATGCCTAA
20256982 GATTGGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATGCCTAAC
Found at i:20257277 original size:26 final size:26
Alignment explanation
Indices: 20257247--20257298 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20257237 TTGACTTAGT
20257247 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* **
20257273 CATACGGAGTTCATTTCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
20257299 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:20257314 original size:316 final size:304
Alignment explanation
Indices: 20256909--20257479 Score: 727
Period size: 304 Copynumber: 1.8 Consensus size: 304
20256899 ATCCGTACGC
* * *
20256909 TCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAACCATACGGAGTTCATTCC
1 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAACCATACGGAGTTCATTCC
**
20256974 CAGCCTAAGATTGGACCGGACCGAGGGTTACGGTAGCAGGACCAGCAGTAGGATCGATAGCACGT
66 CAGCCTAAGATCAGACCGGACCGAGGG-T----T-GC--GA-CAGCA--A-GATCGATAGCACG-
* * **
20257039 AAGGGGGGACCGGGCTGAT-CCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCACCTGCAC
118 AAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCACAC
* *
20257103 GTTCATTTCATTGGTTGGCTTCA-GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG-ATC
183 GCTCATTTCATGGGTTGGCTT-AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAAT-
20257166 GAGGGTTGTGCATTATGCCTCTTCGGTCAACCTCTTCGGTCGGCTGAGTGCCCGCACGT
246 GAGGGTTGTGCATTATGCCTCTTCGGTCAACCTCTTCGGTCGGCTGAGTGCCCGCACGT
* * *
20257225 TCATTTCATGGGTTGACTTAGTCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTT
1 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAACCATACGGAGTTCATTC
* * * * *
20257289 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAAGATTGGTAGTACGCAGGGGGGACCG
65 CCAGCCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAAGATCGATAGCACGAAGGGGGGACCG
* * * ** *
20257354 GGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGGGTGCCCACACGCTCATTTCGTG
130 GGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCACACGCTCATTTCATG
* *
20257419 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGGAATGAGGGTTGTG
195 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAATGAGGGTTGTG
20257480 GCAGCGGGAC
Statistics
Matches: 224, Mismatches: 27, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
303 18 0.08
304 110 0.49
305 3 0.01
307 5 0.02
308 2 0.01
310 2 0.01
311 1 0.00
315 1 0.00
316 79 0.35
317 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (304 bp):
TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAACCATACGGAGTTCATTCC
CAGCCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAAGATCGATAGCACGAAGGGGGGACCGG
GCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCACACGCTCATTTCATGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAATGAGGGTTGTGCATTA
TGCCTCTTCGGTCAACCTCTTCGGTCGGCTGAGTGCCCGCACGT
Found at i:20257625 original size:26 final size:26
Alignment explanation
Indices: 20257588--20257640 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20257578 GTTGACTTAT
* *
20257588 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20257614 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20257640 G
1 G
20257641 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20257910 original size:342 final size:342
Alignment explanation
Indices: 20257196--20257956 Score: 978
Period size: 342 Copynumber: 2.2 Consensus size: 342
20257186 CTTCGGTCAA
* * * * *
20257196 CCTCTTCGGTCGGCTGAGTGCCCGCACGTTCATTTCATGGGTTGACTTAGTCATACAGAGTTCAT
1 CCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTAG-CATACGGAGTTCAT
* * *
20257261 CCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
65 TCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
* * * * *
20257326 CAAGATTGGTAGTACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACC
130 CAAGATTGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACC
* * * *
20257391 GGCTGGGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
195 GGCTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* ** * *
20257456 GCCCCATCCGGAATGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGGGGGGGATCGGACCGATC
260 GCCCCAGCCGGAATGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGACCAATC
*
20257521 CCTGGCTTGTGCATTATG
325 CCTGGCTTGCGCATTATG
**
20257539 CCTCTTCGGTCGGCTCAGCACCC-CACGCTCGTTTTATGGGTTGACTTATGCATACGGAGTTCAT
1 CCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTA-GCATACGGAGTTCAT
* * * * *
20257603 TCTCAGTCTAAGCATACGAAGTTCGTTCCCAGTCTAAGATC-GAATCGGACCGAGGGTTGTGGCA
65 TCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACA
* * * * *
20257667 GTAGGATCT-GCAGCACGCAGGGGGGACCAGGCTGAAT-CTCGACTTGCGTATTCTGCCTCTCCG
129 GCAAGAT-TGGCAGCACGCAGGGGGGACCAGGCCG-ATCCCCGACTTGCGCATTCTGCCTCTCCG
* * * * *
20257730 ATCGGCTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTC
192 ACCGGCTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * *
20257795 TAAGCCCCAGCTGG-ATCGAGGGTTGTGGCAGCGGGTCCGACAGCACGTAGAGGGGGATCGGGCC
257 TAAGCCCCAGCCGGAAT-GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGACC
20257859 AATCCC-GGCTTGCGCATTATG
321 AATCCCTGGCTTGCGCATTATG
* * *
20257880 CCT-TTCCGGTCTGCTCAGTGCCCGCACGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCA
1 CCTCTT-CGGTCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTA-GCATACGGAGTTCA
20257944 TTCCCAGTCTAAG
64 TTCCCAGTCTAAG
20257957 ATCAGACCGG
Statistics
Matches: 360, Mismatches: 51, Indels: 15
0.85 0.12 0.04
Matches are distributed among these distances:
340 2 0.01
341 34 0.09
342 300 0.83
343 24 0.07
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (342 bp):
CCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTTATGGGTTGACTTAGCATACGGAGTTCATT
CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGC
AAGATTGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCG
GCTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCCAGCCGGAATGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGACCAATCC
CTGGCTTGCGCATTATG
Found at i:20257975 original size:158 final size:157
Alignment explanation
Indices: 20257614--20258115 Score: 383
Period size: 158 Copynumber: 3.2 Consensus size: 157
20257604 CTCAGTCTAA
* * * * *
20257614 GCATACGAAGTTCGTTCCCAGTCTAAGATC-GAATCGGACCGAGGGTTGTGGCAGTAGGATCTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGGCAG-CGGATCCGC
* * * * *
20257678 AGCACGCAGGGGGGACCAGGCTGAATCTCGACTTGCGTATTCTGCCTCTCCGATCGGCTGAGCGC
64 AGCACGCAGGGGGGACCAGGCTCAATCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
* **
20257743 TCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCCCGTTTCATGGGTTAACTTAG
* * ** * * *
20257772 GCATAGGGAGTTCATT-CCATTTCTAAGCCCCAG-CTGGATCGAGGGTTGTGGCAGCGGGTCCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCGGATCCG-
* * * * * * * *
20257835 CAGCACGTAGAGGGGGATCGGGC-CAATCCCGGCTTGCGCATTATGCCTTTCCGGTCTGCTCAGT
63 CAGCACGCAG-GGGGGACCAGGCTCAATCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGC
* **
20257899 GCCCGCACGCTCGTTTTGTGGGTTAACTTAG
127 GCCCGCACGCCCGTTTCATGGGTTAACTTAG
* * * *
20257930 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAAGAT-CGAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGC-GGATCCG-C
* * * * * * * * * *
20257994 AGCACGAAGGGGGGGACC-GGGTCGATCACCGGCTTGCACTTTCTACCTCTCCGACCGGCTGAGC
64 AGCACGCA-GGGGGGACCAGGCTCAATC-CCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGC
* **
20258058 GCCCGCACGCTCC-TTTCGTGGGTTGGCTTAG
127 GCCCGCACGC-CCGTTTCATGGGTTAACTTAG
*
20258089 GCATATAGG-GTTCATT-CCATGTCTAAG
1 GCATA-CGGAGTTCATTCCCA-GTCTAAG
20258116 CATATGGAGT
Statistics
Matches: 269, Mismatches: 61, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
157 13 0.05
158 165 0.61
159 87 0.32
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCGGATCCGCAG
CACGCAGGGGGGACCAGGCTCAATCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCC
GCACGCCCGTTTCATGGGTTAACTTAG
Found at i:20258102 original size:159 final size:158
Alignment explanation
Indices: 20257716--20258117 Score: 418
Period size: 158 Copynumber: 2.5 Consensus size: 158
20257706 CGACTTGCGT
* * *
20257716 ATTCTGCCTCTCCGATCGGCTGAGCGCTCGCACGC-CCGTTTCATGGGTTGGCTTAGGCATAGGG
1 ATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCC-TTTCGTGGGTTGGCTTAGGCATAAGG
* * * * * * * * * *
20257780 AGTTCATTCCATTTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGCGGGTCCGACAGCACGTAG
65 AGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGGTTGCGGCAGCAGATCCGAAAGCACGAAG
* *
20257845 AGGGGGATCGGGCCAATCCCGGCTTGCGC
130 AGGGGGACCGGGCCAATCCCGGCTTGCAC
* * * * * * * * ** *
20257874 ATTATGCCTTTCCGGTCTGCTCAGTGCCCGCACGCTCGTTTTGTGGGTTAACTTAGGCATACGGA
1 ATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATAAGGA
*
20257939 GTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAAGGGTTGCGGCAGCAAGAT-CGAAAGCACGA
66 GTTCATT-CCATGTCTAAGCACCAG-CCGGACCAAGGGTTGCGGCAGC-AGATCCGAAAGCACGA
* * *
20258001 AGGGGGGGACCGGGTCGATCACCGGCTTGCAC
128 AGAGGGGGACCGGGCCAATC-CCGGCTTGCAC
* * *
20258033 TTTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATATAGG
1 ATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATA-AGG
20258098 -GTTCATTCCATGTCTAAGCA
65 AGTTCATTCCATGTCTAAGCA
20258118 TATGGAGTTC
Statistics
Matches: 193, Mismatches: 43, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 109 0.56
159 78 0.40
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
ATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATAAGGA
GTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGGTTGCGGCAGCAGATCCGAAAGCACGAAGA
GGGGGACCGGGCCAATCCCGGCTTGCAC
Found at i:20258127 original size:26 final size:26
Alignment explanation
Indices: 20258089--20258141 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20258079 GTTGGCTTAG
20258089 GCATATAGGGTTCATT-CCATGTCTAA
1 GCATATAGGGTTCATTCCCA-GTCTAA
20258115 GCATAT-GGAGTTCATTCCCAGTCTAA
1 GCATATAGG-GTTCATTCCCAGTCTAA
20258141 G
1 G
20258142 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATAGGGTTCATTCCCAGTCTAA
Found at i:20258341 original size:26 final size:26
Alignment explanation
Indices: 20258302--20258352 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20258292 TGACTTAGGA
20258302 ATACGGAGTGCATTCCCAGTCTAAGC
1 ATACGGAGTGCATTCCCAGTCTAAGC
*
20258328 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTGCATTCCCAGTCTAAG
20258353 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
ATACGGAGTGCATTCCCAGTCTAAGC
Found at i:20258777 original size:158 final size:154
Alignment explanation
Indices: 20258326--20258804 Score: 451
Period size: 158 Copynumber: 3.0 Consensus size: 154
20258316 CCCAGTCTAA
* * * * *
20258326 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAAGCTCGGTA
1 GCATAC-GAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
* ** * * *
20258391 GCACGCAGGGGGGATTAGGCCGATCTCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTGCC
64 GCACGTA-GGGGGATCGGGCCGATCCCCA-CTTGCGCATTATGCCTCTTCGATCGGCTGAGTGCC
* * *
20258456 CGCATGCATGTTTTGTGGGTTGGCTTAG
127 CGCACGCTTGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
20258484 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGTGGGACCGAC
1 GCATA-CGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAT
* * * *
20258548 AGCACGTAAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCT-TTCCTG-TCGGTTCAA
63 AGCACGT--AGGGGGATCGGGCCGATCCCC-ACTTGCGCATTATGCCTCTT-C-GATCGGCTGAG
* ** *
20258611 CGCCCGCACGCTTGTTTCGTGCATTGACTTAG
123 TGCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * * * *
20258643 GCATACGACGTTCATTCCTAGTATGAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGATA
1 GCATACGA-GTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
*
20258708 GCACGTAGGAGGGATCGGGCCGATCCCCATCTTGCGCATTTTGCCTCTTCGATCGGCTGAGTGCC
64 GCACGTAGG-GGGATCGGGCCGATCCCCA-CTTGCGCATTATGCCTCTTCGATCGGCTGAGTGCC
*
20258773 CGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CGCACGCTTGTTTCGTGGGTTGGCTTAG
20258801 GCAT
1 GCAT
20258805 TGTTCATTCC
Statistics
Matches: 251, Mismatches: 55, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
157 8 0.03
158 124 0.49
159 115 0.46
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (154 bp):
GCATACGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGATAGC
ACGTAGGGGGATCGGGCCGATCCCCACTTGCGCATTATGCCTCTTCGATCGGCTGAGTGCCCGCA
CGCTTGTTTCGTGGGTTGGCTTAG
Found at i:20259192 original size:26 final size:26
Alignment explanation
Indices: 20259162--20259214 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20259152 GTTGACTTAG
20259162 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
20259188 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20259214 G
1 G
20259215 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20259480 original size:158 final size:158
Alignment explanation
Indices: 20259229--20260637 Score: 1106
Period size: 158 Copynumber: 8.9 Consensus size: 158
20259219 GACTGAACTT
* * * * * * * *
20259229 AGGGTTGCGGCAGCAAGATTGGCAGCATGCAGGAGGGATCAGGCCGATCCCCGGCTTGCGCATTC
1 AGGGTTGTGGCAGCGAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTC
* * * * * * * *
20259294 TGCCTCTCCGGTCGGCTGAGTGCTCGCACGCCCGTTTCATCGGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * *
20259359 ATTCCATGTGTAAGCCCCATCTGGATCG
131 ATTCCATGTCTAAGCCCCAGCCGGATCG
* * * * * * *
20259387 AGGGTTGTGGCAGCGAGACCGGCAGCACACAGGGGGGATCGAGCCGATCCCTGGCTTGCGCATTA
1 AGGGTTGTGGCAGCGAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTC
** * * * * * *
20259452 TGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTATGCCTATGGAGTTC
66 TGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
** * *
20259517 ATTCTCA-GTCTAAG-ATCAGACCGGACCA
131 ATTC-CATGTCTAAGCCCCAG-CCGGATCG
** * * * *** * * *
20259545 AGGGTTACGACAG-TAGGATTGACAGCATATA-GGGGGACCGAGTCGATCCTCGGCTTGCGCATT
1 AGGGTTGTGGCAGCGA-GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * ** * * * *
20259608 CTGCCTCTCCGACTGGCTAAGCACCTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
65 CTGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
20259673 CATTCCATGTCTAA-CCCCAGCCGGATCG
130 CATTCCATGTCTAAGCCCCAGCCGGATCG
* * * * * *
20259701 AGGGTTGTGGCAGCGGGATCGACAACACGCAGAGGGGGACCAGGCCAATCCTCGACTTGCGCATT
1 AGGGTTGTGGCAGCGAGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * * *
20259766 ATGCCTCTTCGGCCAGCTCAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTT
65 CTGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
* ** * * *
20259831 CATTTC-TAGTCTAAG-ATCAGATC-GAACTA
130 CATTCCAT-GTCTAAGCCCCAG-CCGGATC-G
* ** * * * * *
20259860 AGGCTTAAGACAG-TAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATT
1 AGGGTTGTGGCAGCGA-GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * * * * * *
20259924 CTACCTC-TCTGGCTGGTTGAGTGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGT
65 CTGCCTCTTC-GGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* *
20259988 TCATTCCATGTCTAAGCCCCAGCTGGATTG
129 TCATTCCATGTCTAAGCCCCAGCCGGATCG
* * * * *
20260018 AGGGTTGTGGTAGCGGGATTGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGCGAATT
1 AGGGTTGTGGCAGCGAGATCGACAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * ** * *
20260083 ATGCCTATTCAACCGGCTCAATGCCTGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTT
65 CTGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
** * * *
20260147 CATTCCCA-GTCTAAG-ATCGGACCAGACCG
130 CATT-CCATGTCTAAGCCCCAG-CCGGATCG
* * * * * ** * *
20260176 AGGGTTGCGGTAG-TAGGATCGACAGCATGCAGGGGGGACCGGGTCGATCCTTGGCTTACGTATT
1 AGGGTTGTGGCAGCGA-GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * *
20260240 CTGCCTC-TCTGACCGGCTTAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
65 CTGCCTCTTC-GGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
20260304 TCATTCCATGTCTAAGCCCTAGCCGGATCG
129 TCATTCCATGTCTAAGCCCCAGCCGGATCG
* * * * ** *
20260334 ATGGTTGTGGCAGCGAGACCGATAGCATGCAGAGGCAGACCGGGCCGATCCCCGGCTTGTGCATT
1 AGGGTTGTGGCAGCGAGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* ** * * * *
20260399 ATGCCTCTTCGATCGGCTCAGTGCCCGCACACTTGTTTCGTGGGTTGACTTATGCATACGGAGTT
65 CTGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
** * * *
20260464 CATTCC-TAGTCTAAG-ATCAGACCAGACCA
130 CATTCCAT-GTCTAAGCCCCAG-CCGGATCG
* * * *
20260493 AGGGTTGTGGCAGCAAGATCGATAGCACGAAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTC
1 AGGGTTGTGGCAGCGAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTC
* * * * * * * * * *
20260558 TACCCCTCCGGCCGGTTGAGCGCCCACATGCTCGTTTCGTGGCTTAGCTTAGGCATACGGAGTTC
66 TGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
20260623 ATTCCATGTCTAAGC
131 ATTCCATGTCTAAGC
20260638 ATACGGAGTT
Statistics
Matches: 970, Mismatches: 247, Indels: 67
0.76 0.19 0.05
Matches are distributed among these distances:
156 30 0.03
157 169 0.17
158 548 0.56
159 219 0.23
160 4 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGGGTTGTGGCAGCGAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTC
TGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAGCCGGATCG
Found at i:20260141 original size:316 final size:317
Alignment explanation
Indices: 20259188--20260637 Score: 1622
Period size: 316 Copynumber: 4.6 Consensus size: 317
20259178 CCCAATCTAA
* * * * ** * * * * * *
20259188 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-CTGAACTTAGGGTTGCGGCAGCAAGATTGGC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAG-ACCAAGGGTTACGACAGTAGGATCGAC
* * * *
20259252 AGCATGCAGGAGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-TCGGCTGAGTG
65 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GGTTGAGCG
* * * * * *
20259316 CTCGCACGCCCGTTTCATCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCATCT
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * *
20259381 GGATCGAGGGTTGTGGCAGCGAGACCGGCAGCACAC-AGGGGGGATCGAGCCGATCCCTGGCTTG
194 GGATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTG
* ** * *
20259445 CGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAT
259 CGCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * *
20259504 GCCTATGGAGTTCATT-CTCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGTAGGATTGAC
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCAGACCAGACCAAGGGTTACGACAGTAGGATCGAC
** * * * * * * * *
20259568 AGCATATA-GGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTAAGCAC
65 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGTTGAGCGC
* *
20259632 CTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-CCCCAGCCG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * * * *
20259696 GATCGAGGGTTGTGGCAGCGGGATCGACAACACGCAGAGGGGGACCAGGCCAATCCTCGACTTGC
195 GATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGC
* * * *
20259761 GCATTATGCCTCTTCGGCCAGCTCAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAT
260 GCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * * *
20259819 GCATACGGAGTTCATTTCTAGTCTAAGATCAGATC-GAACTAAGGCTTAAGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAG-ACCAAGGGTTACGACAGTAGGATCGAC
* * * * * *
20259883 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTACCTCTCTGGCTGGTTGAGTGC
65 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGTTGAGCGC
* * * *
20259948 CCGCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * **
20260013 GATTGAGGGTTGTGGTAGCGGGATTGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGC
195 GATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGC
* * * * * *
20260078 GAATTATGCCTATTCAACCGGCTCAATGCCTGCACGCTCGTTTCGTGGGTTG-CTTAG
260 GCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * * **
20260135 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGTAGGATCGACA
* * ** * * * * *
20260200 GCATGCAGGGGGGACCGGGTCGATCCTTGGCTTACGTATTCTGCCTCTCTGACCGGCTT-AGCGC
66 GCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGG-TTGAGCGC
*
20260264 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * ** *
20260329 GATCGATGGTTGTGGCAGCGAGACCGATAGCATGCAGAGGCAGACCGGGCCGATCCCCGGCTTGT
195 GATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGC
* * *
20260394 GCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACACTTGTTTCGTGGGTTGACTTAT
260 GCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
** * * * *
20260452 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGTAGGATCGACA
* * * * *
20260517 GCACGAAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCCCTCCGGCCGGTTGAGCGCC
66 GCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGTTGAGCGCC
* * * * * *
20260582 CACATGCTCGTTTCGTGGCTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20260638 ATACGGAGTT
Statistics
Matches: 946, Mismatches: 176, Indels: 23
0.83 0.15 0.02
Matches are distributed among these distances:
314 38 0.04
315 222 0.23
316 413 0.44
317 273 0.29
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGTAGGATCGACA
GCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGTTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGCG
CATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
Found at i:20260540 original size:633 final size:630
Alignment explanation
Indices: 20259188--20260637 Score: 1871
Period size: 633 Copynumber: 2.3 Consensus size: 630
20259178 CCCAATCTAA
* * * * * * *
20259188 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGAACTTAGGGTTGCGGCAGCAAGATTGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGAC-GAACTAAGGGTTGAGGCAGCAAGATCGACA
* * * * *
20259253 GCATGCAGGAGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-TCGGCTGAGTGC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCT-GGTTGAGTGC
* * * * *
20259317 TCGCACGCCCGTTTCATCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCATCTG
129 CCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
* * * *
20259382 GATCGAGGGTTGTGGCAGCGAGACCGGCAGCACACAGGGGGGATCGAGCCGATCCCTGGCTTGCG
194 GATCGAGGGTTGTGGCAGCGAGACCGACAGCACACAAGGGGGACCGAGCCGATCCCCGGCTTGCG
* * ** * * * *
20259447 CATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTATGCCTATGG
259 AATTATGCCTATTCAACCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGG
* * * *
20259512 AGTTCATTCTCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGTAGGATTGACAGCATATAG
324 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGTAGGATCGACAGCATACAG
* * *
20259577 GGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTAAGCACCTGCACGCCC
389 GGGGACCGAGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCCC
20259642 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCAGCCGGATCGAGGGTT
454 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCAGCCGGATCGAGGGTT
* * ** *
20259707 GTGGCAGCGGGATCGACAACACGCAGAGGGGGACCAGGCCAATCCTCGACTTGCGCATTATGCCT
519 GTGGCAGCGAGACCGACAACACGCAGAGGCAGACCAGGCCAATCCCCGACTTGCGCATTATGCCT
* * *
20259772 CTTCGGCCAGCTCAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAT
584 CTTCGACCAGCTCAGTGCCCGCACACTTGTTTCGTGGGTTGACTTAT
* * * * * *
20259819 GCATACGGAGTTCATTTCTAGTCTAAGATCAGATCGAACTAAGGCTTAAGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CGAACTAAGGGTTGAGGCAGCAAGATCGACA
* * *
20259884 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTACCTCTCTGGCTGGTTGAGTGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGTTGAGTGCC
*
20259949 CGCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
130 CGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
* * * ** * *
20260014 ATTGAGGGTTGTGGTAGCGGGATTGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGCG
195 ATCGAGGGTTGTGGCAGCGAGACCGACAGCACAC-AAGGGGGACCGAGCCGATCCCCGGCTTGCG
** * * *
20260079 AATTATGCCTATTCAACCGGCTCAATGCCTGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGG
259 AATTATGCCTATTCAACCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGG
* * * ** *
20260143 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGTAGGATCGACAGCATGCAG
324 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGTAGGATCGACAGCATACA-
* * * * * *
20260208 GGGGGACCGGGTCGATCCTTGGCTTACGTATTCTGCCTCTCTGACCGGCTTAGCGCCCGCACGCC
388 GGGGGACCGAGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCC
* * *
20260273 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATCGATGG
453 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-CCCCAGCCGGATCGAGGG
* * * * * * *
20260338 TTGTGGCAGCGAGACCGATAGCATGCAGAGGCAGACCGGGCCGATCCCCGGCTTGTGCATTATGC
517 TTGTGGCAGCGAGACCGACAACACGCAGAGGCAGACCAGGCCAATCCCCGACTTGCGCATTATGC
* *
20260403 CTCTTCGATCGGCTCAGTGCCCGCACACTTGTTTCGTGGGTTGACTTAT
582 CTCTTCGACCAGCTCAGTGCCCGCACACTTGTTTCGTGGGTTGACTTAT
* * * *
20260452 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACGA-ACTAAGGGTTGAGGCAGCAAGATCGACA
* * * *
20260517 GCACGAAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCCCTCCGGCCGGTTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGTTGAGTGCC
* * * * * *
20260582 CACATGCTCGTTTCGTGGCTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 CGCACGCCCGTTTCATGGGTTGA-CTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20260638 ATACGGAGTT
Statistics
Matches: 698, Mismatches: 114, Indels: 12
0.85 0.14 0.01
Matches are distributed among these distances:
631 255 0.37
632 173 0.25
633 270 0.39
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (630 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACGAACTAAGGGTTGAGGCAGCAAGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGTTGAGTGCCC
GCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA
TCGAGGGTTGTGGCAGCGAGACCGACAGCACACAAGGGGGACCGAGCCGATCCCCGGCTTGCGAA
TTATGCCTATTCAACCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGTAGGATCGACAGCATACAGGG
GGACCGAGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCCCAT
TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCAGCCGGATCGAGGGTTGT
GGCAGCGAGACCGACAACACGCAGAGGCAGACCAGGCCAATCCCCGACTTGCGCATTATGCCTCT
TCGACCAGCTCAGTGCCCGCACACTTGTTTCGTGGGTTGACTTAT
Found at i:20260646 original size:26 final size:26
Alignment explanation
Indices: 20260610--20260662 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20260600 CTTAGCTTAG
20260610 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20260636 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20260662 G
1 G
20260663 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20262517 original size:159 final size:158
Alignment explanation
Indices: 20262298--20262729 Score: 424
Period size: 159 Copynumber: 2.7 Consensus size: 158
20262288 GGTAGCACGC
* * * * * * * *
20262298 AGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGC
1 AGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTGAACGCCCGCACGC
* * * ** *
20262363 CCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACTGAG
66 TCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAAACAGAACTGAC
* * ** **
20262427 GGTTG-TGATAGTGGGACCGGTAGCACACAG
129 GGTTGCAG-CAGCAGGACCGACAGCACACAG
* * *
20262457 AGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATACCTCTTCGGTCGGCTCAACGCCCGCATGC
1 AGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTGAACGCCCGCACGC
* * *
20262522 TCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCACAGTCTAAG-ATCAAACTGAACTGAC
66 TCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCATTC-CAGTCTAAGCACCAAACAGAACTGAC
** **
20262586 GGTTGCAGCAGCAGGATTGACAGCATGCAG
129 GGTTGCAGCAGCAGGACCGACAGCACACAG
* * * ***
20262616 -GAGGGATCGGGTCGATCCCCGGCTTGTGCATTTTGCCTC-TCTAACCGGCTGAACGCCCGCACG
1 AGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTC-GGTCGGCTGAACGCCCGCACG
*
20262679 CTCGTTTCATGGGTTGGCTTAGGCACACGGAGTTCATTCCAAGTCTAAGCA
65 CTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCC-AGTCTAAGCA
20262730 TGCAGAGTTC
Statistics
Matches: 224, Mismatches: 41, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 99 0.44
159 119 0.53
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTGAACGCCCGCACGC
TCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAAACAGAACTGACGG
TTGCAGCAGCAGGACCGACAGCACACAG
Found at i:20263766 original size:158 final size:157
Alignment explanation
Indices: 20263481--20263841 Score: 383
Period size: 158 Copynumber: 2.3 Consensus size: 157
20263471 TAAGATCGGA
*
20263481 TCGGACCGAGGGTTACGGCAGCAGGATCGACAACACGCAGGGGGGACCAAGCTGATCCTCGGCTT
1 TCGGACCGAGGGTTACGGCAGCAGGATCGACAACACCCAGGGGGGACCAAGCTGATCCTCGGCTT
* * * * *
20263546 ACGCATTTTGCCTCTCCGGCTGGCTAAGCGTCACACGCTCGTTTCGTGGGTTGGCTTTGGCATAG
66 ACGCATTTTGCCTCTCCGGCTGGCTAAGCGACACACGCTCATTTCGTGGGTTGACTTAGGCATAC
20263611 GGAGTTCATTTCATGTCTAAGCCCCAG
131 GGAGTTCATTTCATGTCTAAGCCCCAG
** * * * * * *
20263638 TCGGACCGAGGGTTGTGGCAGCGGGAAT-GGCAGCACCCAGAGGGGGACCAGGTTGATCCTTGGC
1 TCGGACCGAGGGTTACGGCAGCAGG-ATCGACAACACCCAG-GGGGGACCAAGCTGATCCTCGGC
* * *
20263702 TTGCGCA-TTTGCCTCTCCGG-TCGGCTCAGC-ACCCGTACGCTCATTTCGTGGGTTGACTTAGG
64 TTACGCATTTTGCCTCTCCGGCT-GGCTAAGCGACAC--ACGCTCATTTCGTGGGTTGACTTAGG
* **
20263764 CATACGGAGTTCA-TTCCTAGTCTAAG-ATCAG
126 CATACGGAGTTCATTTCAT-GTCTAAGCCCCAG
* * ** * *
20263795 ACCGAACCGAGGGTGGCGGCAGCAGGATCGACAGCACGCAGGGGGGA
1 -TCGGACCGAGGGTTACGGCAGCAGGATCGACAACACCCAGGGGGGA
20263842 TCGGGTCGAC
Statistics
Matches: 169, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
156 3 0.02
157 66 0.39
158 100 0.59
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (157 bp):
TCGGACCGAGGGTTACGGCAGCAGGATCGACAACACCCAGGGGGGACCAAGCTGATCCTCGGCTT
ACGCATTTTGCCTCTCCGGCTGGCTAAGCGACACACGCTCATTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTTCATGTCTAAGCCCCAG
Found at i:20263959 original size:12 final size:12
Alignment explanation
Indices: 20263942--20263971 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
20263932 GAGGCTTGTG
20263942 GCAGCAGGACCA
1 GCAGCAGGACCA
*
20263954 GCAGCAGGATCA
1 GCAGCAGGACCA
20263966 GCAGCA
1 GCAGCA
20263972 CGTAAGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.33, T:0.03
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:20264903 original size:26 final size:26
Alignment explanation
Indices: 20264866--20264918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20264856 GTTGACTTAG
*
20264866 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20264892 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20264918 G
1 G
20264919 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20266203 original size:158 final size:158
Alignment explanation
Indices: 20265862--20266204 Score: 422
Period size: 158 Copynumber: 2.2 Consensus size: 158
20265852 CCCAGTCTAA
* * *
20265862 GCATGCAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGGATCGACA
* * *
20265927 GCACGCAGAGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGAGCGGCTGAGCGCC
66 GCACGCAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGAGCGACTGAGCGCC
* **
20265992 CGTATGCTCGTTTCGTGGGTTGACTTAG
131 CGCACCCTCGTTTCGTGGGTTGACTTAG
* * * * *
20266020 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGA-CTGAGGGTTGCGACAGTAGGGTCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGACAGTAGGATCGAC
* * * * * * *
20266084 AGCACGCAGGGGGGACC-GAGTCGGTCCCCGGCTTATGCATTCTGCCTCTTCGATCGACTGAGCT
65 AGCACGCAGAGGGGACCAG-GCCGATCCCCGGCTTACGCATTCTGCCTCTCCGAGCGACTGAGCG
* * *
20266148 CCCGCACCCTCGTTTCTTGTGTTGGCTTAG
129 CCCGCACCCTCGTTTCGTGGGTTGACTTAG
20266178 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
20266205 CATACGAAGT
Statistics
Matches: 156, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 5 0.03
158 151 0.97
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGGATCGACA
GCACGCAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGAGCGACTGAGCGCC
CGCACCCTCGTTTCGTGGGTTGACTTAG
Found at i:20266423 original size:26 final size:26
Alignment explanation
Indices: 20266387--20266436 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20266377 GTTGACTTAG
*
20266387 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCACTCCC-AGTCTAA
20266413 GCATACAGAGTTCACTCCCAGTCT
1 GCATACAGAGTTCACTCCCAGTCT
20266437 CAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:20266769 original size:26 final size:26
Alignment explanation
Indices: 20266740--20266792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20266730 GTTGACTTAG
* *
20266740 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20266766 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20266792 G
1 G
20266793 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20267105 original size:343 final size:346
Alignment explanation
Indices: 20266376--20267109 Score: 827
Period size: 343 Copynumber: 2.1 Consensus size: 346
20266366 TCATTTCGTA
*
20266376 GGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATACAGAGTTCACTCCCAGTCTCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACAGAGTTCACTCCCAGTCTAAG
* * *
20266440 ATCAGACTAGACCGAGGGTTACGACAGTAGGATCGATAGCACGCAGGGAGGGACCGGGCCGATCC
65 ATCAGACCAGACCGAGGGTTACGACAGCAGGATCAATAGCACGCAGGGAGGGACCGGGCCGATCC
* * * * * *
20266505 TTAGCTTGCGCATTCTGCCTCCCCGATCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTT
130 CTAGCTTGCGCATTCTGCCTCCCCGATCGGCTGAGTGCCAGCACACCCATTTCATGGGTTGGCTT
* * * * *
20266570 AGGCACGAGTTCATTCCATGTCTCAACCCTAGCCAGACCGAGGGTTGTGGTAGCAGGACCCGTAG
195 AGGCACGAGTTCATTCCATGTCTCAACCCCAACCAAACCAAGGATTGTGG-AGC--GA--CGTA-
** * *
20266635 CGGGATGGACAGCACACAGAGGGGGATCGAGCTGATCCTCGGCTTACGCATTATGCCTCCCCGGC
254 -GGGACCGACAGCACACAGAGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCCCCGAC
* * ** * *
20266700 CGGCTGAGTGCCTGCACGCTCGTTTCGTG
318 CAGCTCAACGCCTGAACGCTCGTTTCATG
* * *
20266729 GGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGA
* ** * ** **
20266794 TCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAATAGCACGCAGGG-GGGATGGGGTTGATCCC
66 TCAGACCAGACCGAGGGTTACGACAGCAGGATCAATAGCACGCAGGGAGGGACCGGGCCGATCCC
* * * * * * *
20266858 TGGTTTGTGCATTTTGCCTCTCCGATCGGTTGAGTGCCAGCACACCCGTTTCATGGGTTGGCTTA
131 TAGCTTGCGCATTCTGCCTCCCCGATCGGCTGAGTGCCAGCACACCCATTTCATGGGTTGGCTTA
* *
20266923 GGAATAGGGAGTTCATTCCATGTCT-AAGCCCCAACCAAACCAAGGATTGT-G-GC-A-GT-GGG
196 GG--CA-CGAGTTCATTCCATGTCTCAA-CCCCAACCAAACCAAGGATTGTGGAGCGACGTAGGG
** * * *
20266982 ACCGACAGCACGTAGAGGGGGATCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCAGC
257 ACCGACAGCACACAGAGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCCCCGACCAGC
* * *
20267047 TCAACGCTTGAACTCTCTTTTCATG
322 TCAACGCCTGAACGCTCGTTTCATG
20267072 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20267110 ATCAGACCAG
Statistics
Matches: 321, Mismatches: 55, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
343 111 0.35
346 2 0.01
349 1 0.00
352 69 0.21
353 97 0.30
354 7 0.02
355 34 0.11
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (346 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGA
TCAGACCAGACCGAGGGTTACGACAGCAGGATCAATAGCACGCAGGGAGGGACCGGGCCGATCCC
TAGCTTGCGCATTCTGCCTCCCCGATCGGCTGAGTGCCAGCACACCCATTTCATGGGTTGGCTTA
GGCACGAGTTCATTCCATGTCTCAACCCCAACCAAACCAAGGATTGTGGAGCGACGTAGGGACCG
ACAGCACACAGAGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCCCCGACCAGCTCAA
CGCCTGAACGCTCGTTTCATG
Found at i:20267135 original size:159 final size:158
Alignment explanation
Indices: 20266766--20267180 Score: 449
Period size: 159 Copynumber: 2.6 Consensus size: 158
20266756 CCCAGTCTAA
* * *
20266766 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCAATA
* * * * * * * * **
20266831 GCACGCAGGGGGGATGGGGTTGATCC-CTGGTTTGTGCATTTTGCCTCTCCGATCGGTTGAGTGC
66 GCACGCAGGGGGGATCGGGTCGATCCTC-GGCTTGCGCATTATGCCTCTCCGATCAGCTCAACGC
* *
20266895 CAGCACACCCGTTTCATGGGTTGGCTTAG
130 CAGAACACCCGTTTCATGGGTTGACTTAG
* * ** * * * * * *
20266924 GAATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCAAACCAAGGATTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCAA
* * * *
20266987 CAGCACGTAGAGGGGGATCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCAGCTCAAC
64 TAGCACGCAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCAGCTCAAC
** * * *
20267052 GCTTGAACTCTCTTTTCATGGGTTGACTTAG
128 GCCAGAACACCCGTTTCATGGGTTGACTTAG
*
20267083 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGTAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCAATA
*
20267148 GCACGCAGGGGGGATCGGGTCGATCCTCAGCTT
66 GCACGCAGGGGGGATCGGGTCGATCCTCGGCTT
20267181 ACGTATTCTA
Statistics
Matches: 201, Mismatches: 50, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 75 0.37
159 119 0.59
160 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCAATA
GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCAGCTCAACGCC
AGAACACCCGTTTCATGGGTTGACTTAG
Found at i:20267240 original size:158 final size:156
Alignment explanation
Indices: 20266766--20267267 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 156
20266756 CCCAGTCTAA
* *
20266766 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAAT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCAAT
* * * * * * * * *
20266830 AGCACGCAGGGGGGATGGGGTTGATCC-CTGGTTTGTGCATTTTGCCTCTCCGATCGGTTGAGTG
65 AGCACGCAGGGGGGATCGGGTCGATCCTCAGCTTCGT--ATTATGCCTCTCCGATCAGCTGAGCG
*
20266894 CCAGCACA-CCCGTTTCATGGGTTGGCTTAG
128 CC--CACATCTCGTTTCATGGGTTGGCTTAG
* ** ** * * * * * * *
20266924 GAATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCAAACCAAGGATTGTGGCAGTGGGACCGAC
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCAAT
* * * * * * *
20266988 AGCACGTAGAGGGGGATCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCAGCTCAACG
65 AGCACGCAG-GGGGGATCGGGTCGATCCTCAGCTT-CGTATTATGCCTCTCCGATCAGCTGAGCG
** * *
20267053 CTTGA-ACTCTCTTTTCATGGGTTGACTTAG
128 C-CCACA-TCTCGTTTCATGGGTTGGCTTAG
* *
20267083 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTATGGCAGTAGGATCAAT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCAAT
* * * * *
20267147 AGCACGCAGGGGGGATCGGGTCGATCCTCAGCTTACGTATTCTACCTCTCCTG-CCAACTGAGCA
65 AGCACGCAGGGGGGATCGGGTCGATCCTCAGCTT-CGTATTATGCCTCTCC-GATCAGCTGAGCG
20267211 CCCACATGCTCGTTTCATGGGTTGGCTTAG
128 CCCACAT-CTCGTTTCATGGGTTGGCTTAG
20267241 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
20267268 CATATGGAGT
Statistics
Matches: 266, Mismatches: 64, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
157 9 0.03
158 139 0.52
159 110 0.41
160 7 0.03
161 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCAATA
GCACGCAGGGGGGATCGGGTCGATCCTCAGCTTCGTATTATGCCTCTCCGATCAGCTGAGCGCCC
ACATCTCGTTTCATGGGTTGGCTTAG
Found at i:20267271 original size:26 final size:26
Alignment explanation
Indices: 20267241--20267293 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20267231 GTTGGCTTAG
20267241 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
20267267 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20267293 G
1 G
20267294 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20267408 original size:184 final size:184
Alignment explanation
Indices: 20267083--20267452 Score: 463
Period size: 184 Copynumber: 2.0 Consensus size: 184
20267073 GTTGACTTAG
* * * *
20267083 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGTAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCAACA
* **
20267148 GCACGCAGGGGGGATCGGGTCGATCCTCAGCTTACGTATTCTACCTCTCCTGCCAACTGAGCACC
66 GCACGCAGGGGGGATCGGGTCGATCCTCAGCTTACGCATTCTACCTCTCCAACCAACTGAGCACC
* * *
20267213 CACATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 CACACGCTCGTTTCATGGGCTGGCTTAGGCATACAGAGTTCAATCCATGTCTAA
* * * * * ***
20267267 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCAACA
* * * * * * * *
20267332 GCATGCAGTGGGGGATCGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCCAATCGAC-GAGCGC
66 GCACGCAG-GGGGGATCGGGTCGATCCTCAGCTTACGCATTCTACCTCTCCAACCAACTGAGCAC
* **
20267396 CCGCACGCTCGTTTTGTGGGCTGGCTTAGGCATACAGAGTTCAATCCATGTCTAA
130 CCACACGCTCGTTTCATGGGCTGGCTTAGGCATACAGAGTTCAATCCATGTCTAA
20267451 GC
1 GC
20267453 CCCAGTCAGA
Statistics
Matches: 156, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
184 116 0.74
185 40 0.26
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCAACA
GCACGCAGGGGGGATCGGGTCGATCCTCAGCTTACGCATTCTACCTCTCCAACCAACTGAGCACC
CACACGCTCGTTTCATGGGCTGGCTTAGGCATACAGAGTTCAATCCATGTCTAA
Found at i:20268328 original size:26 final size:26
Alignment explanation
Indices: 20268276--20268328 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20268266 GTTGGCTTAG
*
20268276 GCATACAGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
20268302 GCATAC-GAAGTTCATTCCCA-GTCTAA
1 GCATACAG-AGTTCATT-CCATGTCTAA
20268328 G
1 G
20268329 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:20272521 original size:26 final size:26
Alignment explanation
Indices: 20272485--20272538 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
20272475 GGTTAGCTTC
* *
20272485 AGCATATGGAGTTCATT-CCATGTCTA
1 AGCATACGGAGTCCATTCCCA-GTCTA
20272511 AGCATACGGAGTCCATTCCCAGTCTA
1 AGCATACGGAGTCCATTCCCAGTCTA
20272537 AG
1 AG
20272539 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTCCATTCCCAGTCTA
Found at i:20275352 original size:26 final size:26
Alignment explanation
Indices: 20275322--20275374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20275312 GTTGACTTAG
*
20275322 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20275348 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20275374 G
1 G
20275375 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20275833 original size:158 final size:157
Alignment explanation
Indices: 20275408--20275851 Score: 419
Period size: 159 Copynumber: 2.8 Consensus size: 157
20275398 GCAGTAGGAT
* * * * * * *
20275408 CGATAGCTCGTAGGGGGGATCGGGCCGATCCTCGGTTTATGCATTCTACCTCTCC-AGCCGGCTG
1 CGATAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA-CCGGCTG
* * * * *
20275472 AGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAGGCCCT
65 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCAT-GGGAGTTCATTCCATGTCTAAGCACT
* * * * **
20275537 AGCCGGACTGAGGGTTGTGGCAGCGGGAC
129 AGCCGAACTGAGAGTTGCGACAGCAAGAC
* * * * * * **
20275566 CGGTAGCACGTAGAGGGGGACC-AGGCCAATCCCCGGCTTGCGCATTATGTCTCTTCGGTCGGCT
1 CGATAGCACGTAG-GGGGGACCGA-GCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCT
* * * ** ** *
20275630 CAGCGCCCGCACGCTCATTTCGTGGGTTTTCTTTTGCATATGGAGTTCATTCC-TAGTCTAAG-A
64 GAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCAT-GGGAGTTCATTCCAT-GTCTAAGCA
* * * *
20275693 TTAGATCGAACTGAGAGTTGCGATAGCAAGAT
127 CTAG-CCGAACTGAGAGTTGCGACAGCAAGAC
*
20275725 TGATAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGA
1 CGATAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGA
* *
20275790 GCGCCCGTACACTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCA
66 GCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATG-GGAGTTCATTCCATGTCTAAGCA
20275852 TACGGAGTTC
Statistics
Matches: 220, Mismatches: 57, Indels: 17
0.75 0.19 0.06
Matches are distributed among these distances:
158 105 0.48
159 115 0.52
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
CGATAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGA
GCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATGGGAGTTCATTCCATGTCTAAGCACTAG
CCGAACTGAGAGTTGCGACAGCAAGAC
Found at i:20275857 original size:26 final size:26
Alignment explanation
Indices: 20275823--20275875 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20275813 GTTGGCTTAG
*
20275823 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20275849 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20275875 G
1 G
20275876 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20276883 original size:159 final size:158
Alignment explanation
Indices: 20276650--20277096 Score: 431
Period size: 159 Copynumber: 2.8 Consensus size: 158
20276640 ACGGTCGCAA
* *
20276650 GATCGACAGCACGCATGGGGGACCGGG-TCGATCCCCGACTTAG-GCATTCTGCCT-TTCCGGTC
1 GATCGACAGCATGCAGGGGGGACCGGGCT-GATCCCCGACTT-GCGCATTCTGCCTCTT-CGGTC
* * * *
20276712 GGTTGAAGGCCCGCAGGCCCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
63 GGCT-AAGGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
* *** * * *
20276777 GCCCCAG-TTGGATCGAGGGTT-CTGGCAGCGG
127 GCACCAGACCAGACCGAGGGTTGC-AGCAGCAG
* * *
20276808 GATCGACAGCATGTAGAGGGGGACCGGGCTGATCCCCGACTTGCGTATTATGCCTCTTCGGTCGG
1 GATCGACAGCATGCAG-GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGG
* * * * *
20276873 CTCAGTGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG
65 CTAAG-GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAG
**
20276937 -ATTAGACCAGACCGAGGGTTGCAGCAGCAG
128 CACCAGACCAGACCGAGGGTTGCAGCAGCAG
* *** * * * * **
20276967 GATTGACAGCATGCAGGGGGGGTTGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGC
1 GATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGC
* * **
20277032 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCA
66 TAAG-GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
20277097 TATGGAGTTC
Statistics
Matches: 234, Mismatches: 45, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 106 0.45
159 118 0.50
160 7 0.03
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (158 bp):
GATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGC
TAAGGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCAC
CAGACCAGACCGAGGGTTGCAGCAGCAG
Found at i:20278136 original size:159 final size:159
Alignment explanation
Indices: 20277964--20278329 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 159
20277954 CCCGTAACCC
* * *
20277964 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGG
*** ** * * *
20278029 TTGTGGTAGTGGGACCGGCAGCACGTAGAGGAGGACCGGGCTGATCC-CTGGCTTGCGCATTATG
66 TTGTGGTAGCAAGACCAACAACACGTAGAGGAGGACCGGGCCGATCCTC-GGCTTGCGCATTATA
* * * * *
20278093 CCTCTTCGATCGACTCAGCGCCTGTACGTT
130 CCTCTCCGACCGACTCAGCGCCCGCACGCT
* * * * ****
20278123 CGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAGATTGAACCGGACCAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCAAGG
* * * * * *
20278187 TTTGTGGTAGCAAGATCAACAACACGTAGAGGGGGACTGGGCCGATCCTCGGTTTGCGCATTCTA
65 GTTGTGGTAGCAAGACCAACAACACGTAGAGGAGGACCGGGCCGATCCTCGGCTTGCGCATTATA
* *
20278252 CCTCTCCGACCGACTGAGCTCCCGCACGCT
130 CCTCTCCGACCGACTCAGCGCCCGCACGCT
* *
20278282 CGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
20278330 ATACGGAGTT
Statistics
Matches: 166, Mismatches: 38, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
158 3 0.02
159 159 0.96
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.27
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGG
TTGTGGTAGCAAGACCAACAACACGTAGAGGAGGACCGGGCCGATCCTCGGCTTGCGCATTATAC
CTCTCCGACCGACTCAGCGCCCGCACGCT
Found at i:20278338 original size:26 final size:26
Alignment explanation
Indices: 20278302--20278354 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20278292 GTTGGCTTAG
20278302 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20278328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20278354 G
1 G
20278355 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20279080 original size:25 final size:24
Alignment explanation
Indices: 20279051--20279100 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
20279041 TTAGGCATAC
*
20279051 GGAGTTCA-TCCCTAGTCTAAGCATT
1 GGAGTTCATTCCC-AATCTAAG-ATT
20279076 GGAGTTCATTCCCAATCTAAGATT
1 GGAGTTCATTCCCAATCTAAGATT
20279100 G
1 G
20279101 AATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 4 0.17
25 15 0.65
26 4 0.17
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (24 bp):
GGAGTTCATTCCCAATCTAAGATT
Found at i:20279527 original size:158 final size:159
Alignment explanation
Indices: 20279076--20279571 Score: 525
Period size: 158 Copynumber: 3.1 Consensus size: 159
20279066 TCTAAGCATT
* * *
20279076 GGAGTTCATTCCCA-ATCTAAGAT-TGAATCAGACCGAGGGTTGCGGCAGCAGGATCGACAACAC
1 GGAGTTCATT-CCATGTCTAAGATCGGAATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * * * *
20279139 CCAGGGGGGATCGGGTAGATCCCCAGCTTGTGCATTTTGCCTCTCCGACTGGCTAAGCGCCCGTA
65 ACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCA
* * * *
20279204 AGCCCGTTTCATGGGTTGGCTTAGGCATAG
130 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * * * * *
20279234 GGAGTTCATTCCATGTCTAAG-CCGCAGTCGGACCGAGGGATGTGGCAGCGGGACCGACAGCACG
1 GGAGTTCATTCCATGTCTAAGATCGGAATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACA
* ** * * *
20279298 CAGAGGGGGACCGGGCCGATCCATGGCTTGCGCATTATGCCTCTTCGACCGGCTTAGCGCCTGCA
66 CAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCA
* *
20279363 CGCTCGTTTCGTGGGTTGACTTATGCATAC
130 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * ** *
20279393 GAAGTTCATTCCCA-GTCTAAGATCGGACT-AGACCGAGGGTTACGATAGCAGGATTGACAGCAC
1 GGAGTTCATT-CCATGTCTAAGATCGGAATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * *
20279456 ATAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCAACCGGCTGAGCGCCCGCA
65 ACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCA
*
20279521 CGCTCGTTTCGTTGGTTGGCTTAGGCATAC
130 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
20279551 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
20279572 CATACGGAGT
Statistics
Matches: 272, Mismatches: 60, Indels: 12
0.79 0.17 0.03
Matches are distributed among these distances:
157 6 0.02
158 144 0.53
159 115 0.42
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GGAGTTCATTCCATGTCTAAGATCGGAATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACA
CAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCAC
GCTCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:20279581 original size:26 final size:26
Alignment explanation
Indices: 20279545--20279597 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20279535 GTTGGCTTAG
20279545 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20279571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20279597 G
1 G
20279598 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20280304 original size:26 final size:26
Alignment explanation
Indices: 20280268--20280320 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20280258 GTTGACTTAG
20280268 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20280294 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20280320 G
1 G
20280321 ATTGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20281355 original size:26 final size:26
Alignment explanation
Indices: 20281307--20281359 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20281297 GTTGACTTAG
*
20281307 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* * *
20281333 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
20281359 G
1 G
20281360 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:20281843 original size:26 final size:26
Alignment explanation
Indices: 20281806--20281858 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20281796 GTTGGCTTAG
*
20281806 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20281832 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20281858 G
1 G
20281859 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20282051 original size:26 final size:26
Alignment explanation
Indices: 20282015--20282067 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20282005 ATTGAATTAG
20282015 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* *
20282041 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
20282067 G
1 G
20282068 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:20282394 original size:26 final size:26
Alignment explanation
Indices: 20282357--20282409 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20282347 GTTGGCTTAG
20282357 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATATGAAGTTCATTCCCA-GTCTAA
*
20282383 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
20282409 G
1 G
20282410 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:20283567 original size:158 final size:159
Alignment explanation
Indices: 20283152--20283594 Score: 446
Period size: 159 Copynumber: 2.8 Consensus size: 159
20283142 ACTGAGGGTT
* * * * *
20283152 CCGACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTTTGCCGT-TCCGGTCGACT
1 CCGACAGCACGTGGGGGGGATTGGGTAGATCCCCGGCTTGCGCATTATGCC-TCTCCGGTCGGCT
* * * * *
20283216 GAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCC
65 GAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGCCTAAGAC
* * * *
20283280 CTAGCCGGACCAAGGGTTGTGGCAGCGGGA
130 CGAGCCAGACCAAGGGTTGCGGCAGCAGGA
* * * * * * * *
20283310 CCGGCAACACATAGAGGGGGATTGGGTAGATCACCGGCTTGCGCATTATGCCTCTCCAGCCAGCT
1 CCGACAGCACGT-GGGGGGGATTGGGTAGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCT
* * * * * *
20283375 CAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GCCTAAGAT
65 GAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGCCTAAGAC
* **
20283439 CGGGCCAGACTGAGGGTTGCGGCAGCAGGA
130 CGAGCCAGACCAAGGGTTGCGGCAGCAGGA
** * * *
20283469 TTGACAGCACGTGGGGGGGATTGGGCT-GGTCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCT
1 CCGACAGCACGTGGGGGGGATTGGG-TAGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCT
* * * * * *
20283533 GAGTACCTGCGCGCTCGTTTCGTGGGTTGGCTTAGGCAAACGAAGTTCATT-CCATGTCTAAG
65 GAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGCCTAAG
20283595 CATACAGAGT
Statistics
Matches: 225, Mismatches: 55, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
157 3 0.01
158 99 0.44
159 120 0.53
160 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (159 bp):
CCGACAGCACGTGGGGGGGATTGGGTAGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTG
AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGCCTAAGACC
GAGCCAGACCAAGGGTTGCGGCAGCAGGA
Found at i:20284327 original size:26 final size:26
Alignment explanation
Indices: 20284291--20284343 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20284281 GTTGACTTAG
*
20284291 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
20284317 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20284343 G
1 G
20284344 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20284770 original size:158 final size:157
Alignment explanation
Indices: 20284317--20284817 Score: 508
Period size: 160 Copynumber: 3.2 Consensus size: 157
20284307 CCCAGTCTAA
* * * * * *
20284317 GCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAAGGTTAC-GCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGATA
* * * * * * *
20284381 GCACGCAAGGGGGACTGGCCGATCCTCGACTTACGTATTCTGCCTCTCCGACCGACTGAACGCCC
66 GCACGCAGGGGGGACGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAACGCCC
20284446 GCACGAC-CGTTTCATGGGTTGGCTTAG
131 GCACG-CTCGTTTCATGGGTTGGCTTAG
* ** * ** * *
20284473 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTA-ATCGGACCGAGGGTTGTGGTAGCAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTACGGTAGCAGGATCGA
* * * * *
20284536 TAGCATGCAGAGGGGGATCGGGCCGATCCCCCGACTTGCACATTATGCCTCTCCGACTGGCTCAG
64 TAGCACGCAG-GGGGGA-CGGGCCGAT-CCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAA
* * * *
20284601 CACCCGAACGCTCGTTTCGTGGGTTGACTTAG
126 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
20284633 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTACGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGATA
* * * * *
20284698 GCACGTAGGGGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAATGCC
66 GCACGCAGGGGGGA-CGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAACGCC
*
20284763 CGCACGCTCGTTTCATTGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
* *
20284791 GCATATGGAGTTTATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
20284818 CATACGAAGT
Statistics
Matches: 274, Mismatches: 61, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
155 3 0.01
156 35 0.13
157 20 0.07
158 84 0.31
159 22 0.08
160 107 0.39
161 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGATA
GCACGCAGGGGGGACGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAACGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:20285512 original size:158 final size:157
Alignment explanation
Indices: 20285049--20285516 Score: 476
Period size: 159 Copynumber: 3.0 Consensus size: 157
20285039 GATGTAATCG
* * * * *
20285049 GACCAAGGGTTGCGGCAGTAGGATCAACAGCACACAGGGGGGATCGGGTCGATCCCCAGCTTGCG
1 GACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCG
* * * * * * *
20285114 CATTTTACCTCTCCGACCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGACTTAGGCATAGGG
66 CA-TTTGCCTCTACGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
20285179 AGTTCATTCCATGTCTAAGCCCCAGCCA
130 AGTTCATTCCATGTCTAAGCACCAGCCA
* * ** * *
20285207 GACCGAGGGTTGTGGTAG-CGGAACTGATGGCACGCATAGGGGGATCGGGTCGATCCTCAGCTTG
1 GACCGAGGGTTGTGGTAGTAGGATC-GACAGCACGCA-GGGGGGATCGGGTCGATCCCCAGCTTG
* ** * * *
20285271 CACATTATGCCTCTACGGTCGGCTTAGCACCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATAC
64 CGCATT-TGCCTCTACGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * ***
20285336 GGAGTTCATTTC-TAGTCTAAG-ATCAGAGTG
128 GGAGTTCATTCCAT-GTCTAAGCACCAG-CCA
** * * ** *
20285366 GAGTGAGGGTTGTGGTTGTAGGATCGACAGCACGCAGGGAGGGACCAAGCCGATCCCCAGCTTGC
1 GACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGG-GGGATCGGGTCGATCCCCAGCTTGC
* * *
20285431 GCATTTCGCCTCT-CGACCGGCTGAGCACCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACG
65 GCATTT-GCCTCTACGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
20285495 GAGTTCATTCCATGTCTAAGCA
129 GAGTTCATTCCATGTCTAAGCA
20285517 TACGGAGTTC
Statistics
Matches: 247, Mismatches: 53, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 91 0.37
159 148 0.60
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCG
CATTTGCCTCTACGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAGCCA
Found at i:20285517 original size:26 final size:26
Alignment explanation
Indices: 20285488--20285540 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20285478 GTTGGCTTAG
20285488 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
20285514 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
20285540 G
1 G
20285541 ATTCGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:20285573 original size:697 final size:697
Alignment explanation
Indices: 20284218--20285710 Score: 1860
Period size: 697 Copynumber: 2.1 Consensus size: 697
20284208 ACCACCCATT
* * * ** *
20284218 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCGCGCGCTCGTTTCGTGGGT
1 CGATCCCCAGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * *
20284283 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATCTCTAGTCTAAACATACAGAGTTCATTCCCAGTCTAAGATCA
* * * *
20284348 GACCGGACCGAAGGTTACGCAGCAAGATCGACAGCACGCAAGGGGGACTGGCCGATCCTCGACTT
131 GACCGGACCGAAGGTTACGCAGCAAGATCAACAGCACACAAGGGGGACGGGCCGATCCCCGACTT
* * *
20284413 ACGTATTCTGCCTCTCCGACCGACTGAACGCCCGCACGACCGTTTCATGGGTTGGCTTAGGCATA
196 ACGCATTCTACCTCTCCGACCGACTGAACGCCCGCACGACCGTTTCATGGGTTGACTTAGGCATA
* * * * *
20284478 GGGAGTTCATTCCATGTCTAAGCCCTAATCGGACCGAGGGTTGTGGTAGCAGGACCGGTAGCATG
261 GGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGTAGCAGGACCGATAGCACG
*
20284543 CAGAGGGGGATCGGGCCGATCCCCCGACTTGCACATTATGCCTCTCCGACTGGCTCAGCACCCGA
326 CAGAGGGGGATCGGGCCGATCCCCAGACTTGCACATTATGCCTCTCCGACTGGCTCAGCACCCGA
*
20284608 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACT
391 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACT
* * ** * * *
20284673 GAGGGTTACGGTAGTAGGATCGATAGCACGTAGGGGGGACCGGGTCGGTCCCCGGCTTGCGCATT
456 GAGGGTTACGGTAGTAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCAGCTTGCGCATT
* ** * * *
20284738 CTGCCTCTCCGACTGGCTGAATGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATATGGAGTT
521 CTGCCTCTCCGACCGGCTGAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
* * *
20284803 TATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATCGGACCGGATCGAGGGTTGCGA
586 CATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATCGGACCAGATCAAGGGTTGCGA
*
20284868 CAGCAGGACCAGCAGCAGGATTGACAGCACGCAAGGG-GGA-CTGGGC
651 CAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGAGGATC-GGGC
* * * * * **
20284914 CGATCCTCAGCTTACGCATTTTGCCTCTCTGGTCAGCTGAGCACCCACACGCTCATTTCGTTTGT
1 CGATCCCCAGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * *
20284979 TGACTTAGGCATACAGAGTTCATCTCTAGTCTAAACGTACAGAGTTCATTCCCAGTCTAAGATGT
66 TGACTTAGGCATACGGAGTTCATCTCTAGTCTAAACATACAGAGTTCATTCCCAGTCTAAGAT-C
* * * * * *
20285044 A-ATCGGACC-AAGGGTTGCGGCAGTAGGATCAACAGCACACAGGGGGGATCGGGTCGATCCCC-
130 AGACCGGACCGAA-GGTTAC-GCAGCAAGATCAACAGCACACAAGGGGGA-CGGGCCGATCCCCG
* * * *
20285106 AGCTTGCGCATTTTACCTCTCCGACCGACTGAGCGCCCGCAC-ACCCGTTTCGTGGGTTGACTTA
192 A-CTTACGCATTCTACCTCTCCGACCGACTGAACGCCCGCACGA-CCGTTTCATGGGTTGACTTA
* *
20285170 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGC-GGAACTGA
255 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGTAGCAGG-ACCGA
* * * * * * *
20285234 TGGCACGCATAGGGGGATCGGGTCGATCCTCAG-CTTGCACATTATGCCTCTACG-GTCGGCTTA
319 TAGCACGCAGAGGGGGATCGGGCCGATCCCCAGACTTGCACATTATGCCTCTCCGACT-GGCTCA
* * * * * *
20285297 GCACCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAAGATCAG
383 GCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
*** * ** *
20285362 AGTGGAGTGAGGGTTGTGGTTGTAGGATCGACAGCACGCAGGGAGGGACCAAGCCGATCCCCAGC
448 ACCAGACTGAGGGTTACGGTAGTAGGATCGACAGCACGCAGGG-GGGACCAAGCCGATCCCCAGC
* * *
20285427 TTGCGCATT-TCGCCTCT-CGACCGGCTGAGCACCCGCATGCTCATTTCGTGGGTTGGCTTAGGC
512 TTGCGCATTCT-GCCTCTCCGACCGGCTGAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* * *
20285490 ATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTC-GACCAGATC
576 ATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAA-AATCGGACCAGATC
* * * *
20285554 AAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGATAGCACGCAGGGGAGGATCGGGT
640 AAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGAGGATCGGGC
* ** * * * *
20285612 CGATCCCCGGCTTGTGTATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACACTCGTTTCGTGGGT
1 CGATCCCCAGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* *
20285677 TGGCTTAGGCATACGGTGTTCAT-TCTATGTCTAA
66 TGACTTAGGCATACGGAGTTCATCTCTA-GTCTAA
20285711 TCCCTAGCCG
Statistics
Matches: 673, Mismatches: 110, Indels: 26
0.83 0.14 0.03
Matches are distributed among these distances:
695 2 0.00
696 122 0.18
697 286 0.42
698 262 0.39
699 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (697 bp):
CGATCCCCAGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATCTCTAGTCTAAACATACAGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCGAAGGTTACGCAGCAAGATCAACAGCACACAAGGGGGACGGGCCGATCCCCGACTT
ACGCATTCTACCTCTCCGACCGACTGAACGCCCGCACGACCGTTTCATGGGTTGACTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGTAGCAGGACCGATAGCACG
CAGAGGGGGATCGGGCCGATCCCCAGACTTGCACATTATGCCTCTCCGACTGGCTCAGCACCCGA
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACT
GAGGGTTACGGTAGTAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCAGCTTGCGCATT
CTGCCTCTCCGACCGGCTGAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATCGGACCAGATCAAGGGTTGCGA
CAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGAGGATCGGGC
Found at i:20285906 original size:26 final size:26
Alignment explanation
Indices: 20285869--20285921 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20285859 GTTGACTTAG
20285869 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
20285895 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20285921 G
1 G
20285922 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20286235 original size:159 final size:157
Alignment explanation
Indices: 20285895--20286246 Score: 367
Period size: 159 Copynumber: 2.2 Consensus size: 157
20285885 CCTAGTCTAA
* * *
20285895 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAAGACCGACA
* * * * * *
20285960 GCACGCAGGGGGGACCAGGCGGTCTCCGGCTTGCGTATTCTGCCTCTCCAGACGGCTGAGTGCCT
66 GCACGCAGGGAGGACCAGGCGGTCTCCGGCTTGCGCATTATGCCTCTCCAGACAGCTCAGCGCCT
* *
20286025 GTACACCAATTTTGTGGGTTGGCTTAG
131 GTACACCAATTTCGTGGGTTGACTTAG
* * * * ** *
20286052 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGGGACCTA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTGCGGCAGCAAGACCGA
* * *
20286115 CAGCATGCAGAGGAGGACC-GGTCTGAT-TCTCGGCTTGTGCATTATGCCTCTCC-GATCAGCTC
64 CAGCACGCAG-GGAGGACCAGG-C-GGTCTC-CGGCTTGCGCATTATGCCTCTCCAGA-CAGCTC
*
20286177 AGCGCCTG-A-ACGCACGTTTCGTGGGTTGACTTAG
124 AGCGCCTGTACAC-CA-ATTTCGTGGGTTGACTTAG
*
20286211 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCG
20286247 AATCAAGGGT
Statistics
Matches: 158, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
156 2 0.01
157 60 0.38
158 19 0.12
159 75 0.47
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAAGACCGACA
GCACGCAGGGAGGACCAGGCGGTCTCCGGCTTGCGCATTATGCCTCTCCAGACAGCTCAGCGCCT
GTACACCAATTTCGTGGGTTGACTTAG
Found at i:20286404 original size:26 final size:26
Alignment explanation
Indices: 20286368--20286420 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20286358 GTTGGCTTAG
20286368 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20286394 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20286420 G
1 G
20286421 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20286942 original size:26 final size:26
Alignment explanation
Indices: 20286912--20286964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20286902 GTTGACTTAG
*
20286912 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20286938 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20286964 G
1 G
20286965 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20287450 original size:159 final size:158
Alignment explanation
Indices: 20287001--20287452 Score: 387
Period size: 159 Copynumber: 2.9 Consensus size: 158
20286991 ATATGATCGG
* * * * * * * *
20287001 CAGCACGTAG-GG-GGACCGGGCCGATCCTCGGA-TTGCACATTCTGCCTCTTCGGCCGGCTGAG
1 CAGCACGCAGAGGTGGACCGGGCCGATCC-CCGACTTGCGCATTATACCTCTACGACCGGCTCAG
* * * * * *
20287063 -AGCCCGTACACCCGTTTCATGGTTTGGCTTAGGCAT-AGAGAGTTCATTCCATGTCTAAGCCCC
65 CA-CCCGAACGCCCATTTCGTGGGTTGGCTTAGGCATAAG-GAGTTCATTCCAAGTCTAAG-CCC
** * *
20287126 AGCCAAACAGAGGGTTGTGGTAGCAGGACCGA
127 AGCCGGACCGAGGGTTGCGGTAGCAGGACCGA
* * * * * *
20287158 CAGCACGTAGAGGTGGATCGGGTCGATCCCCGTCTTGCGCATTATGCCTCTACGGCCGGCTCAGC
1 CAGCACGCAGAGGTGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTACGACCGGCTCAGC
* * * * * **
20287223 ACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACA-AAGTTCATTCCTAGTCTATGGTCAGA
66 ACCCGAACGCCCATTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCAAGTCTAAGCCCAG-
*
20287287 CCGGACCGAGGGTTGCGGTAGCAGGATCGA
129 CCGGACCGAGGGTTGCGGTAGCAGGACCGA
* * * * *
20287317 CAGCACGCAGGAGG-GGACCGGGCCGATCCCCGACTTGTGCATTCTACCTCTCCGATCGGCTGAG
1 CAGCACGCA-GAGGTGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTACGACCGGCTCAG
** * * * * *
20287381 TGCTCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAAGCCCAG
65 CACCCGAACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCT-AAGCCCAG
20287446 CCGGACC
129 CCGGACC
20287453 AAGGATTGTG
Statistics
Matches: 234, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 10 0.04
158 8 0.03
159 205 0.88
160 10 0.04
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
CAGCACGCAGAGGTGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTACGACCGGCTCAGC
ACCCGAACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAGCCCAGCC
GGACCGAGGGTTGCGGTAGCAGGACCGA
Found at i:20287615 original size:26 final size:26
Alignment explanation
Indices: 20287585--20287637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20287575 GTTGACTTAG
*
20287585 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
*
20287611 GCATATGGAGTTCATCCCCAATCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
20287637 G
1 G
20287638 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAATCTAA
Found at i:20287957 original size:26 final size:26
Alignment explanation
Indices: 20287928--20287980 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20287918 GTTGGCTTAG
20287928 GCATAC-GACGTTCATTCCAT-GTCTAA
1 GCATACAGA-GTTCATTCC-TGGTCTAA
20287954 GCATACAGAGTTCATTCCTGGTCTAA
1 GCATACAGAGTTCATTCCTGGTCTAA
20287980 G
1 G
20287981 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTGGTCTAA
Found at i:20289050 original size:159 final size:156
Alignment explanation
Indices: 20288863--20289164 Score: 367
Period size: 156 Copynumber: 1.9 Consensus size: 156
20288853 TAGCCGATCC
* **
20288863 GAGGGTTGTGGTAGCAGGACCGGTAGCACACAGAGTGGGACCGGGTCGATC-CCTGGCTTACACA
1 GAGGGTTGCGGTAGCAGGACCGACAGCACACAG-G-GGGACCGGGTCGATCTCC-GGCTTACACA
* *
20288927 TTAAGCCTCTCCGATCGGCTCAGCCCCCG-ATCACTCGTTTCATGGGTTGACTTAAGCATACGGA
63 TTAAG-CTCTCCGATCGGCTCAGCACCCGCA-CACTCGTTTCATGGGTTGACTTAAGCATACAGA
20288991 GTTCATTGCCAT-TCTAAGATCGAACCGGAGT
126 GTTCATT-CCATGTCTAAGATCGAACCGGAGT
* * * * * *
20289022 GAGGGTTGCGGTAGTAGGATCGACAGCACGCAGGGGGATCGGGTCGATCTCCGGCTTACGCATTC
1 GAGGGTTGCGGTAGCAGGACCGACAGCACACAGGGGGACCGGGTCGATCTCCGGCTTACACATTA
* * * * * * *
20289087 TGCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCA
66 AGCTCTCCGATCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAAGCATACAGAGTTCA
20289152 TTCCATGTCTAAG
131 TTCCATGTCTAAG
20289165 CATACGGAGT
Statistics
Matches: 122, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
155 4 0.03
156 61 0.50
157 27 0.22
158 3 0.02
159 27 0.22
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GAGGGTTGCGGTAGCAGGACCGACAGCACACAGGGGGACCGGGTCGATCTCCGGCTTACACATTA
AGCTCTCCGATCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAAGCATACAGAGTTCA
TTCCATGTCTAAGATCGAACCGGAGT
Found at i:20289149 original size:156 final size:157
Alignment explanation
Indices: 20288731--20289164 Score: 432
Period size: 159 Copynumber: 2.8 Consensus size: 157
20288721 GTTACGGCAA
** * * * * **
20288731 CACGCAGGGGGGATCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGGGTGCCC
1 CACGCA-GGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCC
* * * * ** * *
20288796 TCACGCCCGTTTCGTGGGTTGCCTTAGGCATAGGGAGTTCATTG-CATGTCTAACCCCTAGCCGA
65 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCATGTCTAAGACCGAACCGA
* **
20288860 TCCGAGGGTTGTGGTAGCAGGACCGGTAG
130 T-CGAGGGTTGCGGTAGCAGGACCGACAG
* * * ** * * *
20288889 CACACAGAGTGGGACCGGGTCGATCCCTGGCTTACACATTAAGCCTCTCCGATCGGCTCAGCCCC
1 CACGCAG-G-GGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACC
* * * *
20288954 CG-ATCACTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTGCCAT-TCTAAGATCGAACC
64 CGCA-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCATGTCTAAGACCGAACC
* *
20289017 GGAGT-GAGGGTTGCGGTAGTAGGATCGACAG
128 -GA-TCGAGGGTTGCGGTAGCAGGACCGACAG
20289048 CACGCAGGGGGATCGGGTCGATCTCC-GGCTTACGCATTCTG-CTCTCCGGTCGGCTGAGCACCC
1 CACGCAGGGGGATCGGGTCGATC-CCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCC
* *
20289111 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG
65 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCATGTCTAAG
20289165 CATACGGAGT
Statistics
Matches: 222, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
155 4 0.02
156 61 0.27
157 28 0.13
158 10 0.05
159 113 0.51
160 5 0.02
161 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
CACGCAGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCATGTCTAAGACCGAACCGAT
CGAGGGTTGCGGTAGCAGGACCGACAG
Found at i:20289174 original size:26 final size:26
Alignment explanation
Indices: 20289138--20289190 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20289128 GTTGGCTTAG
20289138 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20289164 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20289190 G
1 G
20289191 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20289375 original size:26 final size:26
Alignment explanation
Indices: 20289346--20289398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20289336 GTTAACTTAG
*
20289346 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20289372 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20289398 G
1 G
20289399 ATAGATCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20289736 original size:26 final size:26
Alignment explanation
Indices: 20289687--20289736 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20289677 GTTAGCTTAG
**
20289687 GCATACGGAGTTCATTCCTTGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
20289713 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
20289737 TAGAGTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:20290623 original size:26 final size:26
Alignment explanation
Indices: 20290593--20290645 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20290583 GTTGACTTAG
20290593 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
* *
20290619 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20290645 G
1 G
20290646 ATCTGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20291110 original size:158 final size:157
Alignment explanation
Indices: 20290619--20291120 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 157
20290609 CCCAGTCTAA
* * * *
20290619 GCATACAGAGTTGATTCCCA-GTCTAAGATCTGATCGGA-CAGAAGGTT-ACGGTAGCAGGATCG
1 GCATACAGAGTTCATT-CCATGTCTAAGATCCGATCGGACCA-AGGGTTGA-GGCAGCAGGATCG
* * * * * * *
20290681 ATAGCACGCAGGGGGGACCGAGCCGACCCCCGACATGCGCATTCTGCCTCTCCGA-CCAGCTGAG
63 ACAGCACGCAGGGGGGACCG-GTCGATCCCCGACTTACACATTCTGCCTCTCCGATCGA-CTGAG
* *
20290745 TGCCCGTACACTCATTTTGTGGGTTGGCTTAG
126 TGCCCGCACACTCATTTCGTGGGTTGGCTTAG
** * * * * * * * *
20290777 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACAGAGTTCATTCCATGTCTAAGATCCGA-TCGGACCAAGGGTTGAGGCAGCAGGATCGAC
* * * ** * * * * * *
20290841 AGCACGCAGAGGGGGACCGGGTTGATCCTCGGCTTATTCATTATGCCTCTTCGGTCGGCTCAATG
65 AGCACGCAG-GGGGGACC-GGTCGATCCCCGACTTACACATTCTGCCTCTCCGATCGACTGAGTG
* * * * *
20290906 CCCACACGCTCATTTCATGGGTTGACTTAT
128 CCCGCACACTCATTTCGTGGGTTGGCTTAG
*
20290936 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCAAGGGTTGAGGCAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCCGATCGGACCAAGGGTTGAGGCAGCAGGATCGAC
* * *
20291000 AGCACGCAGGGGGGACCAGGTCGATCCCCGACTTACACATTCTGTCTCTCCAATCGACTGAGCGC
65 AGCACGCAGGGGGGACC-GGTCGATCCCCGACTTACACATTCTGCCTCTCCGATCGACTGAGTGC
* *
20291065 CCGCACTCTCATTTCGTGGGTTGGCTTCG
129 CCGCACACTCATTTCGTGGGTTGGCTTAG
*
20291094 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
20291121 CATACAGAGT
Statistics
Matches: 263, Mismatches: 71, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
157 8 0.03
158 134 0.51
159 114 0.43
160 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCCGATCGGACCAAGGGTTGAGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGTCGATCCCCGACTTACACATTCTGCCTCTCCGATCGACTGAGTGCCC
GCACACTCATTTCGTGGGTTGGCTTAG
Found at i:20291130 original size:26 final size:26
Alignment explanation
Indices: 20291094--20291146 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20291084 GTTGGCTTCG
*
20291094 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20291120 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20291146 G
1 G
20291147 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20292066 original size:59 final size:58
Alignment explanation
Indices: 20291939--20292217 Score: 396
Period size: 59 Copynumber: 4.7 Consensus size: 58
20291929 TTATGCAGGA
* *
20291939 AAAATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTGGAAAATTTATTTTCAAGG
*
20291999 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAA-ATTTATTTTCAAGG
* ** * *
20292058 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTATTTTCAAGG
* *
20292116 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAAATTTTGATCTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAAA-TTT-ATTTTCAAGG
20292178 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTT
20292218 TTGATTTTTA
Statistics
Matches: 196, Mismatches: 17, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
58 52 0.27
59 53 0.27
60 44 0.22
61 7 0.04
62 40 0.20
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTATTTTCAAGG
Found at i:20292268 original size:30 final size:30
Alignment explanation
Indices: 20292234--20292290 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
20292224 TTTATTTAAA
*
20292234 GAAAATAAAATAATAAAACAAAATAAAAGT
1 GAAAATAAAAAAATAAAACAAAATAAAAGT
*
20292264 GAAAATAAAAAAATAAAATAAAATAAA
1 GAAAATAAAAAAATAAAACAAAATAAA
20292291 GAAAAGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (30 bp):
GAAAATAAAAAAATAAAACAAAATAAAAGT
Found at i:20292278 original size:20 final size:19
Alignment explanation
Indices: 20292230--20292323 Score: 88
Period size: 18 Copynumber: 4.9 Consensus size: 19
20292220 GATTTTTATT
*
20292230 TAAAGAAAATAAAATAATA
1 TAAAGAAAATAAAATAAAA
*
20292249 -AAACAAAATAAAAGTGAAAA
1 TAAAGAAAATAAAA-T-AAAA
20292269 TAAA-AAAATAAAATAAAA
1 TAAAGAAAATAAAATAAAA
* *
20292287 TAAAGAAAAGTAAAACCAAGA
1 TAAAGAAAA-TAAAA-TAAAA
20292308 T-AA-AAAATAAAATAAA
1 TAAAGAAAATAAAATAAA
20292324 GGTAAAAAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
17 2 0.03
18 25 0.40
19 10 0.16
20 19 0.30
21 7 0.11
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (19 bp):
TAAAGAAAATAAAATAAAA
Found at i:20292321 original size:5 final size:5
Alignment explanation
Indices: 20292235--20292290 Score: 57
Period size: 5 Copynumber: 11.6 Consensus size: 5
20292225 TTATTTAAAG
*
20292235 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT -AAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
20292283 AAAAT AAA
1 AAAAT AAA
20292291 GAAAAGTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
3 3 0.07
4 6 0.14
5 28 0.65
6 2 0.05
7 4 0.09
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:20292853 original size:19 final size:19
Alignment explanation
Indices: 20292826--20292863 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
20292816 TGGTCGGAAT
20292826 TTTCATCGAAAAATTCAAC
1 TTTCATCGAAAAATTCAAC
*
20292845 TTTCGTCGAAAAATTCAAC
1 TTTCATCGAAAAATTCAAC
20292864 CGAAATCTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (19 bp):
TTTCATCGAAAAATTCAAC
Found at i:20293252 original size:14 final size:14
Alignment explanation
Indices: 20293235--20293354 Score: 58
Period size: 13 Copynumber: 8.5 Consensus size: 14
20293225 ATATTATAGG
20293235 ATAAATAAAAAATA
1 ATAAATAAAAAATA
20293249 AT-AATAATAACAGATA
1 ATAAATAA-AA-A-ATA
* *
20293265 TATAATTAGATAAATA
1 -ATAAATA-AAAAATA
*
20293281 A-AAAT-ACAAA-A
1 ATAAATAAAAAATA
20293292 ATAAAT--AAAATA
1 ATAAATAAAAAATA
20293304 A-AAATAAAAAATA
1 ATAAATAAAAAATA
* *
20293317 TATATTAATAAATAGTA
1 -ATA--AATAAAAAATA
20293334 AT-AATAAATAAATA
1 ATAAATAAA-AAATA
20293348 ATAAATA
1 ATAAATA
20293355 CATAGGATAT
Statistics
Matches: 81, Mismatches: 9, Indels: 31
0.67 0.07 0.26
Matches are distributed among these distances:
11 9 0.11
12 10 0.12
13 17 0.21
14 13 0.16
15 7 0.09
16 8 0.10
17 12 0.15
18 4 0.05
19 1 0.01
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (14 bp):
ATAAATAAAAAATA
Found at i:20293326 original size:23 final size:23
Alignment explanation
Indices: 20293274--20293328 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
20293264 ATATAATTAG
*
20293274 ATAAATAAAAATACAAAAATAAAT
1 ATAAATAAAAATA-AAAAATATAT
20293298 A-AAATAAAAATAAAAAATATAT
1 ATAAATAAAAATAAAAAATATAT
*
20293320 ATTAATAAA
1 ATAAATAAA
20293329 TAGTAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 10 0.36
23 17 0.61
24 1 0.04
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (23 bp):
ATAAATAAAAATAAAAAATATAT
Found at i:20293343 original size:17 final size:16
Alignment explanation
Indices: 20293238--20293347 Score: 68
Period size: 17 Copynumber: 6.8 Consensus size: 16
20293228 TTATAGGATA
20293238 AATAAA-AAATAATAAT
1 AATAAATAAAT-ATAAT
* *
20293254 AATAACAGATATATAATT
1 AATAA-ATAAATATAA-T
* *
20293272 AGATAAATAAAAATACAAA
1 A-ATAAAT--AAATATAAT
*
20293291 AATAAATAAA-ATAAA
1 AATAAATAAATATAAT
20293306 AATAAA-AAATAT-AT
1 AATAAATAAATATAAT
*
20293320 -ATTAATAAATAGTAAT
1 AATAAATAAATA-TAAT
20293336 AATAAATAAATA
1 AATAAATAAATA
20293348 ATAAATACAT
Statistics
Matches: 74, Mismatches: 9, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
13 4 0.05
14 9 0.12
15 13 0.18
16 10 0.14
17 15 0.20
18 12 0.16
19 5 0.07
20 6 0.08
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.26
Consensus pattern (16 bp):
AATAAATAAATATAAT
Found at i:20293405 original size:8 final size:8
Alignment explanation
Indices: 20293392--20293430 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
20293382 TAAAATATAG
*
20293392 AATAAAAT
1 AATAAAAA
20293400 AATAAAAA
1 AATAAAAA
20293408 AAT-AAAA
1 AATAAAAA
20293415 AATAACAAA
1 AATAA-AAA
20293424 AATAAAA
1 AATAAAA
20293431 TTGGACTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 7 0.25
8 13 0.46
9 8 0.29
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (8 bp):
AATAAAAA
Found at i:20293413 original size:16 final size:17
Alignment explanation
Indices: 20293392--20293431 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
20293382 TAAAATATAG
20293392 AATAAAATAATAA-AAA
1 AATAAAATAATAACAAA
20293408 AATAAAA-AATAACAAA
1 AATAAAATAATAACAAA
20293424 AATAAAAT
1 AATAAAAT
20293432 TGGACTTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
AATAAAATAATAACAAA
Found at i:20293418 original size:23 final size:23
Alignment explanation
Indices: 20293237--20293430 Score: 65
Period size: 23 Copynumber: 8.0 Consensus size: 23
20293227 ATTATAGGAT
*
20293237 AAATAAAAAATAATAATAAT-AAC
1 AAATAAAAAATAA-AATAATAAAA
* * * * * *
20293260 AGATATATAATTAGATAA-ATAA
1 AAATAAAAAATAAAATAATAAAA
20293282 AAATACAAAAAT-AAATAA-AATAA
1 AAATA-AAAAATAAAATAATAA-AA
*
20293305 AAATAAAAAATATATATTAATAAATA
1 AAATAAAAAATA-A-AATAATAAA-A
* *
20293331 GTAATAATAAAT-AAATAATAAATA
1 -AAATAAAAAATAAAATAATAAA-A
* ** *
20293355 CATAGGATATAAAGGAAAATATATACATA
1 -A-A--ATAAAAAATAAAATA-ATA-AAA
* *
20293384 AAATATAGAATAAAATAATAAAA
1 AAATAAAAAATAAAATAATAAAA
*
20293407 AAATAAAAAATAACAAAAATAAAA
1 AAATAAAAAATAA-AATAATAAAA
20293431 TTGGACTTAC
Statistics
Matches: 125, Mismatches: 30, Indels: 31
0.67 0.16 0.17
Matches are distributed among these distances:
22 21 0.17
23 33 0.26
24 23 0.18
25 19 0.15
26 3 0.02
27 15 0.12
28 6 0.05
29 4 0.03
30 1 0.01
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.24
Consensus pattern (23 bp):
AAATAAAAAATAAAATAATAAAA
Found at i:20293642 original size:10 final size:10
Alignment explanation
Indices: 20293596--20293641 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
20293586 TTTTTTTATA
20293596 TTTTTTGTTT
1 TTTTTTGTTT
20293606 TTTTTTGTTT
1 TTTTTTGTTT
**
20293616 GCTTTTGTTT
1 TTTTTTGTTT
20293626 TTGTTTT-TTT
1 TT-TTTTGTTT
20293636 TTTTTT
1 TTTTTT
20293642 TAACCAAAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
9 4 0.13
10 23 0.74
11 4 0.13
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:20293785 original size:45 final size:45
Alignment explanation
Indices: 20293658--20293791 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 45
20293648 AAGCTCCTCT
* * *
20293658 AAACAGAGGCTCAACGACTTTGAAAAAATAAATTGCTCCTCT----
1 AAACAGAGGCACCACGACTTTG-AAAAGTAAATTGCTCCTCTAAAC
* *
20293700 AAATAGAGGCACCATGACTTTTGAAAAGTAAATTGCTCCTCTAAAC
1 AAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAAC
20293746 AGAACAGAGGCACCACGACTTTG-AAAGTAAATTGCTCCTCTAAAC
1 A-AACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAAC
20293791 A
1 A
20293792 CGACTTGAAG
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
42 32 0.41
43 4 0.05
45 23 0.29
46 5 0.06
47 15 0.19
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.23
Consensus pattern (45 bp):
AAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAAC
Found at i:20293797 original size:31 final size:31
Alignment explanation
Indices: 20293759--20293851 Score: 99
Period size: 31 Copynumber: 3.1 Consensus size: 31
20293749 ACAGAGGCAC
20293759 CACGACTTTGAAAGTAAATTGCTCCTCTAAA
1 CACGACTTTGAAAGTAAATTGCTCCTCTAAA
20293790 CACGAC-TTG-AAGT-AA-TGCT-C-CTAAA
1 CACGACTTTGAAAGTAAATTGCTCCTCTAAA
*
20293815 GGCCACGACTTTGAAAAGTAAATCGCTCCTCTAAA
1 ---CACGACTTTG-AAAGTAAATTGCTCCTCTAAA
20293850 CA
1 CA
20293852 GAGGCACCAT
Statistics
Matches: 51, Mismatches: 1, Indels: 19
0.72 0.01 0.27
Matches are distributed among these distances:
25 5 0.10
26 1 0.02
27 4 0.08
28 8 0.16
29 7 0.14
30 3 0.06
31 10 0.20
32 4 0.08
33 3 0.06
34 1 0.02
35 5 0.10
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (31 bp):
CACGACTTTGAAAGTAAATTGCTCCTCTAAA
Found at i:20293923 original size:41 final size:41
Alignment explanation
Indices: 20293817--20293927 Score: 195
Period size: 42 Copynumber: 2.7 Consensus size: 41
20293807 CTCCTAAAGG
*
20293817 CCACGACTTTGAAAAGTAAATCGCTCCTCTAAACAGAGGCA
1 CCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
*
20293858 CCATGACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 CCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
20293900 CCACGACTTTGAAAAGTAAATTGCTCCT
1 CCACGACTTTGAAAAGTAAATTGCTCCT
20293928 TGACAATCAT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
41 27 0.41
42 39 0.59
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (41 bp):
CCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
Found at i:20294946 original size:8 final size:8
Alignment explanation
Indices: 20294934--20295043 Score: 114
Period size: 8 Copynumber: 13.6 Consensus size: 8
20294924 TGAGTCCTCC
*
20294934 TTTTTCAC
1 TTTTTCAT
20294942 TTTTTC-T
1 TTTTTCAT
20294949 TTTTTCAT
1 TTTTTCAT
*
20294957 TTTTTTAT
1 TTTTTCAT
*
20294965 TTTTTTAT
1 TTTTTCAT
*
20294973 TTTTTTAT
1 TTTTTCAT
20294981 TTTTTCAT
1 TTTTTCAT
20294989 TTTTTCAT
1 TTTTTCAT
*
20294997 TTTTTCTCT
1 TTTTTC-AT
*
20295006 TTTTTTAT
1 TTTTTCAT
**
20295014 TTCATCATT
1 TTTTTCA-T
*
20295023 TTTTTCTT
1 TTTTTCAT
20295031 TTTTTCAT
1 TTTTTCAT
20295039 TTTTT
1 TTTTT
20295044 TCAAGCATAG
Statistics
Matches: 86, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.07
8 69 0.80
9 11 0.13
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTCAT
Found at i:20294993 original size:33 final size:32
Alignment explanation
Indices: 20294942--20295044 Score: 134
Period size: 33 Copynumber: 3.2 Consensus size: 32
20294932 CCTTTTTCAC
*
20294942 TTTTTCTTTTTTCATTTTTTTATTTTTTTATT
1 TTTTTATTTTTTCATTTTTTTATTTTTTTATT
* *
20294974 TTTTTATTTTTTCATTTTTTCATTTTTTCTCTT
1 TTTTTATTTTTTCATTTTTTTATTTTTT-TATT
** *
20295007 TTTTTATTTCATCATTTTTTTCTTTTTTTCATT
1 TTTTTATTTTTTCATTTTTTTATTTTTTT-ATT
20295040 TTTTT
1 TTTTT
20295045 CAAGCATAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
32 27 0.44
33 34 0.56
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (32 bp):
TTTTTATTTTTTCATTTTTTTATTTTTTTATT
Found at i:20295045 original size:17 final size:17
Alignment explanation
Indices: 20294942--20295045 Score: 103
Period size: 17 Copynumber: 6.4 Consensus size: 17
20294932 CCTTTTTCAC
20294942 TTTTTC-TTTTTTCATT
1 TTTTTCTTTTTTTCATT
*
20294958 TTTTTATTTTTTT-ATT
1 TTTTTCTTTTTTTCATT
*
20294974 TTTTT-ATTTTTTCA-T
1 TTTTTCTTTTTTTCATT
20294989 TTTTTCATTTTTTCTC-TT
1 TTTTTC-TTTTTT-TCATT
* **
20295007 TTTTT-ATTTCATCATT
1 TTTTTCTTTTTTTCATT
20295023 TTTTTCTTTTTTTCATT
1 TTTTTCTTTTTTTCATT
20295040 TTTTTC
1 TTTTTC
20295046 AAGCATAGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
15 14 0.20
16 24 0.34
17 25 0.35
18 8 0.11
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTCTTTTTTTCATT
Found at i:20297521 original size:26 final size:26
Alignment explanation
Indices: 20297485--20297537 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20297475 CCGGTCCGGT
*
20297485 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20297511 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20297537 C
1 C
20297538 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20297731 original size:25 final size:26
Alignment explanation
Indices: 20297691--20297742 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
20297681 CCGGCCCGAT
*
20297691 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGAATGAGAATGAACTCCGTATG
*
20297717 CTTAGAATG-GAATGAAGTCCGTATG
1 CTTAGAATGAGAATGAACTCCGTATG
20297742 C
1 C
20297743 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGAATGAGAATGAACTCCGTATG
Found at i:20297828 original size:205 final size:207
Alignment explanation
Indices: 20297464--20297850 Score: 478
Period size: 205 Copynumber: 1.9 Consensus size: 207
20297454 CCTGCTGTCG
* * * * * *
20297464 CAACCCTCGATCCGGTCCGGTCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
1 CAACCCTCGATCCGGCCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAATGGGAATGAAC
** * ** *
20297529 TCCGTATGCCTAAGTTAACCCATGAAATGAGCGTGCGGGCACTCAGTCGCCCGAAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACTCAACCGCCAGAAGAGGCAGAAT
* * * *
20297594 GCACAAGTCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCAAT-CTACTACTGTCCTGCTACCG
131 GCACAAGTCGGGGACCAGCCCGATCCCCCCTGCGTACTGTCAATCCTACTACTGTCCTGCTACCG
20297658 GTCCTGCTACCA
196 GTCCTGCTACCA
* * *
20297670 CAACCCTTGGTCCGGCCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAAT-GGAATGAAG
1 CAACCCTCGATCCGGCCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAATGGGAATGAAC
* ** *
20297734 TCCGTATGCCTAAGCCAACCCATGAAAAGAGTGTGCGGGTGCTCAACCGATCAG-AGAGGCAGAA
66 TCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACTCAACCG-CCAGAAGAGGCAGAA
* * *
20297798 TGCGCAAG-CTGGGGACC-GACCCGATCCCCCCTGTGTACTGTCGATCCTACTAC
130 TGCACAAGTC-GGGGACCAG-CCCGATCCCCCCTGCGTACTGTCAATCCTACTAC
20297851 CGTAACCTTC
Statistics
Matches: 151, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
204 2 0.01
205 92 0.61
206 57 0.38
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (207 bp):
CAACCCTCGATCCGGCCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAATGGGAATGAAC
TCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACTCAACCGCCAGAAGAGGCAGAAT
GCACAAGTCGGGGACCAGCCCGATCCCCCCTGCGTACTGTCAATCCTACTACTGTCCTGCTACCG
GTCCTGCTACCA
Found at i:20298218 original size:26 final size:26
Alignment explanation
Indices: 20298189--20298241 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20298179 CTGGTTTGAT
*
20298189 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20298215 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20298241 C
1 C
20298242 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20298599 original size:26 final size:26
Alignment explanation
Indices: 20298570--20298622 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20298560 CCGGTCTGAT
*
20298570 CTTAGAC-TGGGAAAGAACTCTGTATG
1 CTTAGACAT-GGAAAGAACTCCGTATG
*
20298596 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAAAGAACTCCGTATG
20298622 C
1 C
20298623 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTCCGTATG
Found at i:20298953 original size:159 final size:157
Alignment explanation
Indices: 20298595--20299096 Score: 439
Period size: 159 Copynumber: 3.2 Consensus size: 157
20298585 AACTCTGTAT
* * * * * *
20298595 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGTGTTAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-ACCCATGAAACGAGTGTGCGGGCGCTCAA
** * * *
20298660 CCGACCGGAGAGGCAGAATGCGTAAGTC-GAGGACCG-GCTCGATCCC-CCTGTGTGCTATCGAT
65 CCGACCGGAGAGGCAGAATGCACAAGTCAG-GGATCGACCT-GATCCCTCCTGCGTGCTATCGAT
* * * * *
20298722 CCTACTGTCGCAACCTTTGGTCCGATCTGA
128 CCTACTGCCACAACCCTCGGTCCGAGCTGA
* *
20298752 TCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGTGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCACCCATGAAACGAGTGTGCGGGCGCTCA
* * * *
20298816 ACCGACCGAAGAGGCATAATGCACAAGTCAGGGATTGACCTGATCCCTCTCTGCGTGCTGTC-AG
64 ACCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCGACCTGATCCCTC-CTGCGTGCTATCGA-
* *
20298880 TCCTGCTGCCACAACCCTCGGTCC-AGCTAGG
127 TCCTACTGCCACAACCCTCGGTCCGAGCT-GA
* * * *
20298911 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCATGAAATGGGCT-TGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-ACCCATGAAACGAG-TGTGCGGGCGCTCA
* * * * * * * *
20298975 GCTGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAACCCGATCCCTCCTGCATACTATCGAT-
64 ACCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCGACCTGATCCCTCCTGCGTGCTATCGATC
* * * *
20299039 CTAGCTACCGCAACCCTCGGT-CGGGTCCGA
129 CTA-CTGCCACAACCCTCGGTCCGAG-CTGA
* *
20299069 TCTTAGAC-TAGGAACGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
20299097 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 51, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
156 1 0.00
157 90 0.32
158 62 0.22
159 123 0.44
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCACCCATGAAACGAGTGTGCGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCACAAGTCAGGGATCGACCTGATCCCTCCTGCGTGCTATCGATCCT
ACTGCCACAACCCTCGGTCCGAGCTGA
Found at i:20299099 original size:26 final size:26
Alignment explanation
Indices: 20299070--20299122 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20299060 CGGGTCCGAT
20299070 CTTAGACTAGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* * *
20299096 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
20299122 C
1 C
20299123 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:20299173 original size:881 final size:879
Alignment explanation
Indices: 20297658--20299513 Score: 2227
Period size: 881 Copynumber: 2.1 Consensus size: 879
20297648 CCTGCTACCG
* * * * * *
20297658 GTCCTGCTACCACAACCCTTGGTCCGGCCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGA
1 GTCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * * * *
20297723 -ATGGAATGAAGTCCGTATGCCTAAGCCAACCCATGAAAAGAGTGTGCGGGTGCTCAACCGATCA
66 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAATGTGCAGGTGCTAAACCGACCA
* *
20297787 GAGAGGCAGAATGCGCAAGCTGGGGACCGACCCGATCCCCCCTGTGTACTGTCGATCCTACTACC
131 GAGAGGCAGAATGCGCAAGCTGAGGACCGACCCGATCCCCCCTGTGTACTATCGATCCTACTACC
* *
20297852 GTAACCTTCGATCCGATCCATTCTTAGAACCGGGAATGAAGTCCGTATGCCTAAGTCAACCCACG
196 GCAACCTTCGATCCGATCCATTCTTAGAACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * **
20297917 AAACGAGCGTTCGGCGCTGAGCCGATGGAGAGGCATAATGCGTAAGCGAGGATTGAGCCAGTCCT
261 AAACGAGCGTGCGGCGCTCAACCGACGAAGAGGCATAATGCACAAGCGAGGATTGAGCCAGTCCT
* * *
20297982 CCTCTACGAGCTGTCGGTCCCGTTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGA
326 CCTCTACGAGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGA
* *
20298047 ACTCCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCGTGCACTCAGCCGATCGGAGAGGCAG
391 ACTCCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCACTCAGCCGACCGGAGAGGCAG
* * * *
20298112 AATGCGCAAGCCGGGTATCAACCCGGTCCCCCTACGTGATACCGATCCTACTGCCACAACCCTCG
456 AATGCACAAGCCGGGTATCAACCCGATCCCCCTACATGATACCGATCCTACTACCACAACCCTCG
* ** * *
20298177 GTCTGGTTTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGC
521 GTCGGGTCCGATCTTAGACTAGGAACGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
* * **
20298242 CAAAGTCAACCCATGAAATCAGCGTGCGGGTGCTCAGTCGACCAGAGAGGCC-AGCTGAAAAGGC
586 CAAAGTCAACCCACGAAATCAGCGTGCGAGCACTCAGTCGACCAGAGAGGCCGA-CTGAAAAGGC
** * * *
20298306 ATAATGTGCAAGCCGGGGATCAGCCCG-GTCCACCTCTGCGTGGTGTCGATCCCGCTGTCGGTCC
650 ATAATACGCAAGCCGAGGATCAGCCCGAGTCC-CCTCTACGTGCTGTCGATCCCGCTGTCGGTCC
* * * ** * * *
20298370 TGCTGCCATAACCCTCGGTTTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
714 TGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAA
* * * ** ** * * * * *
20298435 CCCATGACACAAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGCATAACCCGGGGATCGG
779 CCCACGAAACAAGCGTGCAGGCACTCAACCAATCAGAAAGGCAGAATACATAACCCGGGAATAGG
* * * * * *
20298500 CCCGGTCCC-CCCCTGCATGCTATCGATCCTGCTGTTG
844 CCCGATCCCTCCACTG--GGCTATCGATCCTACTGCTA
* * * *
20298537 GTCGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAAGAACTCTGTATGCTTAGA
1 GTCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * *
20298602 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGTGTTAAACCGACCG
66 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAATGTGCAGGTGCTAAACCGACCA
* * * * **
20298667 GAGAGGCAGAATGCGTAAG-TCGAGGACCGGCTCGAT-CCCCCTGTGTGCTATCGATCCTACTGT
131 GAGAGGCAGAATGCGCAAGCT-GAGGACCGACCCGATCCCCCCTGTGTACTATCGATCCTACTAC
* * * * *
20298730 CGCAACCTTTGGTCCGATCTGA-TCTTA-AACTGGGAATGAACTCCGTATGCCTAAGTCCACCCA
195 CGCAACCTTCGATCCGATC-CATTCTTAGAACCGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
20298793 TGAAACGAGTGTGCGGGCGCTCAACCGACCGAAGAGGCATAATGCACAAGTC-AGGGATTGA-CC
259 CGAAACGAGCGTGC-GGCGCTCAACCGA-CGAAGAGGCATAATGCACAAG-CGA-GGATTGAGCC
* * * * *
20298856 TGATCC-CTCTCTGCGTGCTGTCAGTCCTGCTGCCACAACCCTCGGTCC-AGCTAGGGCTTAGAC
320 AG-TCCTC-CTCTACGAGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGA-CTAGGGCTTAGAC
* * * * *
20298919 ATGGAATGAACT-CCCTATGCCTAAGCCGACCCATGAAATGGGCTTGCGGGCACTCAGCTGGCCG
382 ATGGAATGAACTCCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCACTCAGCCGACCG
* *
20298983 GAGAGGCAGAATGCACAAGCCAGGG-ATCAACCCGATCCCTCCTGCAT-ACTATCGAT-CTAGCT
447 GAGAGGCAGAATGCACAAGCC-GGGTATCAACCCGATCCC-CCTACATGA-TACCGATCCTA-CT
*
20299045 ACCGCAACCCTCGGTCGGGTCCGATCTTAGACTAGGAACGAACTCCGTATGCTTAGACTGGGGAT
508 ACCACAACCCTCGGTCGGGTCCGATCTTAGACTAGGAACGAACTCCGTATGCTTAGACTGGGGAT
* * * * * ** *
20299110 GAACTCCGTATGCCTAGGTCAACCCACGAAA-CGTGGGTGCGAGCATTCAG-CTGGTCGGAGAGG
573 GAACTCCGTATGCCAAAGTCAACCCACGAAATC-AGCGTGCGAGCACTCAGTC-GACCAGAGAGG
* * * *
20299173 CCGACTGAAGAGGCATAATACGCAAGCCGAGGATCAGCCCGATTTCCCTCTATGTGCTGTCGATC
636 CCGACTGAAAAGGCATAATACGCAAGCCGAGGATCAGCCCGAGTCCCCTCTACGTGCTGTCGATC
* * *
20299238 CTGCTGTCGGTCTTGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTTCAT
701 CCGCTGTCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCAT
** * *
20299303 ACGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCACTCAACCAATCAGAAAGGCAGAATACGTA
766 ACGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCACTCAACCAATCAGAAAGGCAGAATACATA
* * *
20299368 AGCCGGGAATAGGCTCGATCCCTCCAGTGGGCTATCGATCCTACTGCTA
831 ACCCGGGAATAGGCCCGATCCCTCCACTGGGCTATCGATCCTACTGCTA
* * *
20299417 GTCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
1 GTCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* *
20299482 CATGGAATGAACTTCGTATGCCTAAGCTAACC
66 CATGGAATGAACTCCGTATGCCTAAGCCAACC
20299514 TGTGAAACGA
Statistics
Matches: 822, Mismatches: 136, Indels: 37
0.83 0.14 0.04
Matches are distributed among these distances:
878 44 0.05
879 111 0.14
880 297 0.36
881 363 0.44
882 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (879 bp):
GTCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAATGTGCAGGTGCTAAACCGACCA
GAGAGGCAGAATGCGCAAGCTGAGGACCGACCCGATCCCCCCTGTGTACTATCGATCCTACTACC
GCAACCTTCGATCCGATCCATTCTTAGAACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGCGCTCAACCGACGAAGAGGCATAATGCACAAGCGAGGATTGAGCCAGTCCT
CCTCTACGAGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGA
ACTCCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCACTCAGCCGACCGGAGAGGCAG
AATGCACAAGCCGGGTATCAACCCGATCCCCCTACATGATACCGATCCTACTACCACAACCCTCG
GTCGGGTCCGATCTTAGACTAGGAACGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
CAAAGTCAACCCACGAAATCAGCGTGCGAGCACTCAGTCGACCAGAGAGGCCGACTGAAAAGGCA
TAATACGCAAGCCGAGGATCAGCCCGAGTCCCCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTG
CTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACC
CACGAAACAAGCGTGCAGGCACTCAACCAATCAGAAAGGCAGAATACATAACCCGGGAATAGGCC
CGATCCCTCCACTGGGCTATCGATCCTACTGCTA
Found at i:20299488 original size:26 final size:26
Alignment explanation
Indices: 20299450--20299502 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20299440 CCGGTCCAAT
20299450 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
20299476 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
20299502 C
1 C
20299503 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:20299788 original size:26 final size:26
Alignment explanation
Indices: 20299759--20299811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20299749 CCGATTCGAT
20299759 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
20299785 CTTAGACTGGGGATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20299811 C
1 C
20299812 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20300342 original size:159 final size:158
Alignment explanation
Indices: 20300154--20300444 Score: 354
Period size: 159 Copynumber: 1.8 Consensus size: 158
20300144 CGATCTGAGC
* * * *
20300154 TTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAA-TGAGCGTTCGGGCACTGAAC
1 TTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGGA-CGTACGGGCACTCAAC
* * * * * * *
20300218 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATTGACCAGGTCCCCCTCTACGTGTTGCCGATCC
65 CAACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCAGGTCCCCC-CTACGTGCTGCCGATCC
20300283 TGCTGCCACAACTCTCATTTTGGCTGGGGT
129 TGCTGCCACAACTCTCATTTTGGCTGGGGT
* ** *
20300313 TTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACGGACGTACGGGTGCTCAG
1 TTAGAC-TGGGAATGAACT-CTATATGCCTAAGCCAACCCACGAAACGGACGTACGGGCACTCAA
* * * *
20300376 CCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
64 CCAACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCAGGTCCCCCCTACGTGCTGCCGATCC
20300441 TGCT
129 TGCT
20300445 ACTGCAACCC
Statistics
Matches: 110, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
158 19 0.17
159 86 0.78
160 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGGACGTACGGGCACTCAACC
AACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCAGGTCCCCCCTACGTGCTGCCGATCCTG
CTGCCACAACTCTCATTTTGGCTGGGGT
Done.