Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 190 of 402
Found at i:20300506 original size:26 final size:26
Alignment explanation
Indices: 20300470--20300522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20300460 TCGGTTCGAT
20300470 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
**
20300496 CTTAGACTAGGGGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20300522 C
1 C
20300523 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20300879 original size:26 final size:26
Alignment explanation
Indices: 20300850--20300899 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20300840 CCGATTCGAT
20300850 CTTAGAC-TGGGAATGAACTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
*
20300876 CTTAGACATGGAATGAAGTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
20300900 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:20301147 original size:160 final size:160
Alignment explanation
Indices: 20300876--20301379 Score: 524
Period size: 159 Copynumber: 3.2 Consensus size: 160
20300866 ACTCCGTACG
* *
20300876 CTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-AGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCA-CTCAG
* * * * *
20300940 CC-GACTAGAGAGGAAGAATGCGCAAGTCGGGGATCAGCCTAGTCCCCCCCTAGCGTGCTG-TCG
65 CCGGTC-GGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTAGTCCCCCCCTAGCGTGCTGCT-G
* * *
20301003 ATCCTGTTGCCGCAACCTTCGGTCTGGTCCGAT
128 ATCCTATTGCCACAACCCTCGGTCTGGTCCGAT
* * * * * *
20301036 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
20301100 CCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAG-CTCGGTCCCCCTCT-GTGTGCTACTGG
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCT-AGTCCCCCCCTAGCGTGCTGCTGA
* * * * * * **
20301163 TCCCATTACCACAACCCTCGATC-CGACTGGGG
129 TCCTATTGCCACAACCCTCGGTCTGGTC-CGAT
* * *
20301195 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * *
20301260 CGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAACCTAAT-CCCCCCTA-CGTGCTGCTGATC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTAGTCCCCCCCTAGCGTGCTGCTGATC
* * *
20301323 CTACTGTCACAACCCTCGGTCTGGTTCGAT
131 CTATTGCCACAACCCTCGGTCTGGTCCGAT
20301353 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
20301380 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 59 0.22
159 117 0.43
160 93 0.34
161 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTAGTCCCCCCCTAGCGTGCTGCTGATC
CTATTGCCACAACCCTCGGTCTGGTCCGAT
Found at i:20301389 original size:26 final size:26
Alignment explanation
Indices: 20301353--20301405 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20301343 CTGGTTCGAT
20301353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20301379 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20301405 C
1 C
20301406 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20301732 original size:514 final size:505
Alignment explanation
Indices: 20300660--20301830 Score: 1309
Period size: 514 Copynumber: 2.3 Consensus size: 505
20300650 CTGCTATCAT
* *
20300660 AACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * ** *
20300725 CGAGG-GTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATGTACAAGCCGGGGATCGACCCGGTCC
66 CG-GGCGTGCGGGCGCTCAGCCG-GCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCC
* **
20300789 CCTCTACGTATTGTCGATCCCGCTGCTAGTCCTACTGTCTGAACCCTCGATCCGATTCGATCTTA
129 CCCCTACG---TG-C--T--CGCTGC-AGTCCTACTGTCACAACCCTCGATCCGATTCGATCTTA
*
20300854 GACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCATGA
185 GACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* * * *
20300919 AACGAGCGTGCGGGAGCTCAACCGACTAGAGAGGAAGAATGCGCAAGTCGGGGATCAGCCTAGTC
250 AACAAGCGTGCGGGAGCTCAACCGACCAGAGAGGAAGAATGCGCAAGCCGAGGATCAGCCTAGTC
* * * * * * *
20300984 CCCCCCTAGCGTGCTGTCGATCCTGTTGCCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGGAA
315 CCCCCCTAGCCTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGCTCCGAGCTTAGACTGGGAA
* * ** * * * *
20301049 TGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGCACTGAGCCGGTCGGAGAGGC
380 TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTAAGCCGATCGGAAAGGC
* * * * * * *
20301114 ATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCCTCTGTGTGCTACTGGTCCCATTACCAC
445 ATAATGCGCAAGCAGAGGATCAGCCCGATCCCCCTCTATATACTACTGGTCCCACTACCAC
*
20301175 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * **
20301240 CGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAACCTAATCCC
66 CGGGCGTGCGGGCGCTCAGCCGG-CAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCC
* * *
20301305 CCCTACGTGCT-GCTG-A-TCCTACTGTCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAAT
130 CCCTACGTGCTCGCTGCAGTCCTACTGTCACAACCCTCGATCCGATTCGATCTTAGACTGGGAAT
* * **
20301367 GAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTTAACCCATGAAACAAGCGT
195 GAACTCCGTACGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGT
* * * * * * * *
20301431 GCGGGTGCTCAACCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCAG-CTCGGTCCCCCTCTG
259 GCGGGAGCTCAACCGACCAGAGAGGAAGAATGCGCAAGCCGAGGATCAGCCT-AGTCCCCCCCT-
* * * * *
20301495 TGTCCTGCCAATCTCGCTGCTAGTCTTGCTGCCACAACCCTCGGTCCGACT-GGGGCTTAGACAT
322 AG-CCTG-----CT-G-T-CGA-TCCTGCTGCCACAACCCTCGGTCCG-CTCCGAGCTTAGAC-T
*
20301559 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTAAGCCTATCGGA
375 GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTAAGCCGATCGGA
* * * * *
20301623 AAGGCATAATGCGCAAGGCAG-GGATCGGCCCGATCCTCCTCTATATACT-GTCGGTCCCGCTGC
440 AAGGCATAATGCGCAA-GCAGAGGATCAGCCCGATCCCCCTCTATATACTACT-GGTCCCACTAC
20301686 CAC
503 CAC
* *
20301689 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCCGACA
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * *
20301754 CGGGCGTGAGGGCACTTAGCCGGCTAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCC
66 CGGGCGTGCGGGCGCTCAGCCGGC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGT-CC
20301819 CCCCTACGTGCT
129 CCCCTACGTGCT
20301831 ACCGATCTTA
Statistics
Matches: 552, Mismatches: 83, Indels: 42
0.82 0.12 0.06
Matches are distributed among these distances:
502 3 0.01
503 146 0.26
504 2 0.00
505 3 0.01
506 4 0.01
509 1 0.00
510 2 0.00
511 2 0.00
512 3 0.01
513 4 0.01
514 245 0.44
515 137 0.25
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (505 bp):
AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTGCGGGCGCTCAGCCGGCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCC
CCTACGTGCTCGCTGCAGTCCTACTGTCACAACCCTCGATCCGATTCGATCTTAGACTGGGAATG
AACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGC
GGGAGCTCAACCGACCAGAGAGGAAGAATGCGCAAGCCGAGGATCAGCCTAGTCCCCCCCTAGCC
TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGCTCCGAGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTAAGCCGATCGGAAAGGCATAATGCGCAA
GCAGAGGATCAGCCCGATCCCCCTCTATATACTACTGGTCCCACTACCAC
Found at i:20302137 original size:26 final size:26
Alignment explanation
Indices: 20302101--20302154 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
20302091 GTGGGCGTTC
*
20302101 AGCCTGTCGGAGAGGCAGAATGCGCA
1 AGCCGGTCGGAGAGGCAGAATGCGCA
*
20302127 AGCCGGTCGGAGAGGTAGAATGCGCA
1 AGCCGGTCGGAGAGGCAGAATGCGCA
20302153 AG
1 AG
20302155 TCGAGGATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.20, G:0.41, T:0.11
Consensus pattern (26 bp):
AGCCGGTCGGAGAGGCAGAATGCGCA
Found at i:20302798 original size:26 final size:26
Alignment explanation
Indices: 20302748--20302800 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20302738 CCGGTCTGAT
**
20302748 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20302774 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20302800 C
1 C
20302801 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20303128 original size:26 final size:26
Alignment explanation
Indices: 20303090--20303142 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20303080 CCTAACCCAT
*
20303090 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20303116 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20303142 C
1 C
20303143 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20303475 original size:26 final size:26
Alignment explanation
Indices: 20303446--20303498 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20303436 CCGGTCTGAT
20303446 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
20303472 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20303498 C
1 C
20303499 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20303985 original size:26 final size:26
Alignment explanation
Indices: 20303947--20303999 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20303937 CCGGTCTGAT
*
20303947 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20303973 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20303999 C
1 C
20304000 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20304424 original size:26 final size:26
Alignment explanation
Indices: 20304373--20304425 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20304363 CTCATCTGAT
*
20304373 CTTAGACGGGGAATAAACTTCATATG
1 CTTAGACGGGGAATAAACTCCATATG
* *
20304399 CTTAGACTGGGG-ATGAACTCCGTATG
1 CTTAGAC-GGGGAATAAACTCCATATG
20304425 C
1 C
20304426 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATAAACTCCATATG
Found at i:20304835 original size:157 final size:156
Alignment explanation
Indices: 20304583--20305082 Score: 418
Period size: 157 Copynumber: 3.2 Consensus size: 156
20304573 CCGACTGGGG
* * * * ** *
20304583 CTTAGAC-ATGGAATGAAGTTCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAAGCACTCAG
1 CTTAGACTA-GGAATGAA-CTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTGAG
* ** * * * *
20304647 TCTGCAGGAGAGGCAGAATGCGTAAGTCGAGGACCGACCTGATCCCCCCTGCATGCTGTCGATCT
64 ACAACCGGAGAGGCAGAATGCGTAAGCCGAGGACCGACCTGATCCCCCCTGCATGCTATCGATCC
*
20304712 TGCTACCTCAACCCTCAGTTCGATCTGAT
129 TGCTACCACAACCCTC-GTTCGATCTGAT
* * ** *
20304741 CTTAGACTAGGAATGAACTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTAGGTGCTGAGCC
1 CTTAGACTAGGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTGAGAC
* * *** *
20304806 AACCGGAGAGGCATAATGCGTAAGCCGAGGATCGA-CTCGATCCCCCTCTATGTGCTACCGATCC
66 AACCGGAGAGGCAGAATGCGTAAGCCGAGGACCGACCT-GATCCCCC-CTGCATGCTATCGATCC
** * * * **
20304870 CACTGCCACAACCCTCGGTCTG-GCTGGGG
129 TGCTACCACAACCCTCGTTC-GATCT-GAT
* * * *
20304899 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTGAG
1 CTTAGACTA-GGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTGAG
*** * * * *
20304963 ACGGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGTCC-GAT-CCCCCTGCATACTATCGATC
64 ACAACCGGAGAGGCAGAATGCGTAAGCCGAGGA-CCGACCTGATCCCCCCTGCATGCTATCGATC
* * **
20305026 CTGCTACCGCAACCCTTGTTCCGATCCAAT
128 CTGCTACCACAACCCTCGTT-CGATCTGAT
20305056 CTTAGACTAGGAATGAACTTCGTATGC
1 CTTAGACTAGGAATGAAC-TCGTATGC
20305083 TTAGACTGCG
Statistics
Matches: 265, Mismatches: 64, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
156 2 0.01
157 129 0.49
158 65 0.25
159 67 0.25
160 1 0.00
161 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTGAGAC
AACCGGAGAGGCAGAATGCGTAAGCCGAGGACCGACCTGATCCCCCCTGCATGCTATCGATCCTG
CTACCACAACCCTCGTTCGATCTGAT
Found at i:20306113 original size:26 final size:26
Alignment explanation
Indices: 20306077--20306129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20306067 CTGGTTCGAT
*
20306077 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
*
20306103 CTTAAATTGGGGATGAACTCCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
20306129 C
1 C
20306130 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAAATTGGGAATGAACTCCGTATG
Found at i:20307522 original size:159 final size:157
Alignment explanation
Indices: 20307129--20307655 Score: 486
Period size: 157 Copynumber: 3.3 Consensus size: 157
20307119 TGGTCCTGCT
*
20307129 ACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 ACCACAACCCTCAGTCCGATCCGAGCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCA
* * ** * * *
20307194 TGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCAAGCACCGGCCCT
66 TGAAACGAGCGTGCGGGAGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCG
*
20307259 ATCCCCCTACGTGCTATCGATCCTGCG
131 ATCCCCCTACGTGCTATCGATCCCGCG
** * * * * * *
20307286 ACCGTAACCCTCAGTTCGATCCGATCTTAGAATGGGAATAAACTCTGAATGCCTAAGTCAACCCA
1 ACCACAACCCTCAGTCCGATCCGAGCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCA
* *
20307351 TGAAACGAGCGTGCGGGAGCTGAGCCGACCGGAGAGGCATAATGCACAAGTCGGGGATCGGCCCG
66 TGAAACGAGCGTGCGGGAGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCG
* * *
20307416 ATCCTCCTCTGCGTGCTGTCGGTCCCGCTG
131 ATCC-CC-CTACGTGCTATCGATCCCGC-G
* * * * * * **
20307446 -CCACAACCCTCGGTCCG-GCTGGGGCTTGGACTTGGAATGAACTCCCTATGCCTAAGCCAACCC
1 ACCACAACCCTCAGTCCGATC-CGAGCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCC
* * * * ** ** * *
20307509 ACGAAATGGGCGTGCGGCCA-CTCAGCCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGATTGACC
65 ATGAAACGAGCGTGCGG-GAGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCC
* * ** ** *
20307573 TGGTCCCCCTTACGTGCTGCCGATCCTACT
129 CGATCCCCC-TACGTGCTATCGATCCCGCG
* * * * * *
20307603 ACCGCAACCTTC-GATCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCC
1 ACCACAACCCTCAG-TCCGATCCGAGCTTAGACTGGGAATGAACTCTGTATGCC
20307656 AATGTCGTCG
Statistics
Matches: 293, Mismatches: 68, Indels: 17
0.78 0.18 0.04
Matches are distributed among these distances:
157 120 0.41
158 55 0.19
159 116 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
ACCACAACCCTCAGTCCGATCCGAGCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCA
TGAAACGAGCGTGCGGGAGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCG
ATCCCCCTACGTGCTATCGATCCCGCG
Found at i:20308017 original size:26 final size:26
Alignment explanation
Indices: 20307979--20308028 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20307969 GTTCGATCTC
20307979 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
* *
20308005 AGACTGGGGATGAACTTCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
20308029 CTAAATCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:20308569 original size:26 final size:26
Alignment explanation
Indices: 20308540--20308591 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20308530 CAGTCCGATT
*
20308540 TTAGAC-TGGGAATTAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
*
20308566 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
20308592 CTAAGCCAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:20309024 original size:159 final size:159
Alignment explanation
Indices: 20308564--20309063 Score: 492
Period size: 159 Copynumber: 3.2 Consensus size: 159
20308554 AACTCCGTAT
* * * *
20308564 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAGCCCATGAAACAAGCATGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAG
* * * * * * *
20308629 CCGGTTGGAGAGGTAGAATGCACAAACCGGGGACCAGCCCGAT-CCCCCCTACGTGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCCTACGTGCTGTCGATC
* * *
20308693 CTGCTACCGCAACCCTCGGTCCGATCCGA
131 CTGCTGCAGTAACCCTCGGTCCGATCCGA
* * * * * * *
20308722 TCTTAGAC-TGGGAATGAACTCCGTATGCCTCAGTCAACCAATGAAACGAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCA
* * * * ** * * *
20308786 GCCGGTCGGAGAGGCATAATGCACAAGCCAAGGATCGGCCTGCTCTTCCTCTACGTGCTGCCGGT
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCCTACGTGCTGTCGAT
* * * *
20308851 CCCGCTGCCA-TAACCCTCGGTCTGA-CTGGG
130 CCTGCTG-CAGTAACCCTCGGTCCGATC-CGA
* * *
20308881 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAG
* * * *
20308946 CCGATCGGAGAGGCAGAATG-AGTAAGCCGAGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGAT
66 CCGGTCGGAGAGGCAGAATGCA-CAAGCCGAGGATCGGCCCGATCCCCCCCTACGTGCTGTCGAT
* * *
20309010 CCTACTGTAGTAACCCTCGGTCC-AGTCTGA
130 CCTGCTGCAGTAACCCTCGGTCCGA-TCCGA
*
20309040 TCTTAGAC-TGGGAATGAACTCCGT
1 GCTTAGACAT-GGAATGAACTCCGT
20309064 TTGCTTAGAC
Statistics
Matches: 268, Mismatches: 64, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 90 0.34
159 174 0.65
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCCTACGTGCTGTCGATC
CTGCTGCAGTAACCCTCGGTCCGATCCGA
Found at i:20315326 original size:26 final size:26
Alignment explanation
Indices: 20315290--20315345 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
20315280 GAAACCCTCA
20315290 ATGCTCAGACTGAGCATGAACT-TCGT
1 ATGCTCAGACTGAGCATGAACTCT-GT
* * *
20315316 ATGCTTAGACTGGGGATGAACTCTGT
1 ATGCTCAGACTGAGCATGAACTCTGT
20315342 ATGC
1 ATGC
20315346 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
ATGCTCAGACTGAGCATGAACTCTGT
Found at i:20315971 original size:158 final size:157
Alignment explanation
Indices: 20315464--20315964 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 157
20315454 GTCAATCCCA
** *
20315464 CTGTCGATCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATG
1 CTGTCGATCCTTCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATG
** * * * *
20315529 CCTAAGCCAACTTACGTAACGAGCGTGCGGGCGTTCAATCGATCGGAGAGGCAGAATGCGCAAGT
66 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGT
* *
20315594 CGAGGATCGACCCGATCCCCCGCTGCGTG
131 CGGGGATCGA-CCGATCCCCC-CTACGTG
* ** *** * *
20315623 CTGTCGAT-CTTGCTACTGCAACCCTCGGTCCGGTCT-AATCTTAGAC-TGGGAATAAACTCCGT
1 CTGTCGATCCTT-CTGCCACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCAT
* * * * * *
20315685 ATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCT-AAGCCGGCCGAAGAGGCATAAT-CGC
63 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCGACCGGAGAGGCAGAATGCGC
* * * * ** *
20315748 AAGCCGGGGATTGGCCCAGTCCACTTCTACGTA
127 AAGTCGGGGATCGACCGA-TCC-CCCCTACGTG
* *
20315781 CTGCCGATCCTGT-TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 CTGTCGATCCT-TCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
* * * *
20315845 GCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGTAAG
65 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAG
*
20315910 TCGGGGATCGACTTGATCCCCCCTACGTG
130 TCGGGGATCGAC-CGATCCCCCCTACGTG
* *
20315939 CTGTCGATCCTTCTGTCGCAACCCTC
1 CTGTCGATCCTTCTGCCACAACCCTC
20315965 TATCCGGTCT
Statistics
Matches: 266, Mismatches: 62, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
157 6 0.02
158 144 0.54
159 112 0.42
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
CTGTCGATCCTTCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATG
CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGT
CGGGGATCGACCGATCCCCCCTACGTG
Found at i:20317235 original size:26 final size:26
Alignment explanation
Indices: 20317199--20317251 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20317189 CCAATCTAAT
*
20317199 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20317225 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20317251 C
1 C
20317252 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20317382 original size:21 final size:21
Alignment explanation
Indices: 20317357--20317409 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
20317347 GCCGATCTCG
20317357 CCCTCGATCTGACTGCCACAA
1 CCCTCGATCTGACTGCCACAA
20317378 CCCTCGATCTGACTGCCACAA
1 CCCTCGATCTGACTGCCACAA
*
20317399 CCCTCGGTCTG
1 CCCTCGATCTG
20317410 GTTGGGGCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.19, C:0.43, G:0.17, T:0.21
Consensus pattern (21 bp):
CCCTCGATCTGACTGCCACAA
Found at i:20317956 original size:26 final size:26
Alignment explanation
Indices: 20317917--20317972 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
20317907 CCAGTTTGAT
20317917 CTTAGACTGCGAATCAACTCCGTATG
1 CTTAGACTGCGAATCAACTCCGTATG
* *
20317943 CTTAGACATG-GAATGAACTTCGTATG
1 CTTAGAC-TGCGAATCAACTCCGTATG
20317969 CTTA
1 CTTA
20317973 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATCAACTCCGTATG
Found at i:20318438 original size:159 final size:158
Alignment explanation
Indices: 20317943--20318445 Score: 536
Period size: 159 Copynumber: 3.2 Consensus size: 158
20317933 ACTCCGTATG
* * * *
20317943 CTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACGAAA-TGAGCATGCGGGCGCTC-G
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGAGC-TGCGGGCGCTCAG
* * * * *
20318006 ATCGATCGGAGAGGCAGAATGCGCAAGCCTGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATC
65 -CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATC
*
20318071 CTGCTACTGCAACCCTCGATCCGATCTGAT
129 CTGCTACTGCAACCCTCGATCCGATCTGGT
* * * *
20318101 CTTAGAC-TGGGAATGAACTTCGTATGCCTAA-CTCAACCCATGAAACAAGTGC-GCGGGTGCTG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAAC-AGAGCTGCGGGCGCTC
* * * *
20318163 AGCCGACCGGAGAGGCATAATGTGCAAGCTGGGGATTGACCCGATCCCCCTCTGCGTGCTATCGA
63 AGCCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTATCGA
* * * * ** * * *
20318228 CCCCGTTGCCACAACCCTC-AGTCTG-GCTGGGG
127 TCCTGCTACTGCAACCCTCGA-TCCGATCT-GGT
* * *
20318260 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGAGC-TGCGGGCGCTCAG
* * * * *
20318325 CCTATCGGAGAGGCAGATTGTGCAAGCCGGGGATCGACTCGATCCCTCCTGCATGCTATCGATCC
65 CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
20318390 TGCTACTGCAACCCTCGATCCGATCTGGT
130 TGCTACTGCAACCCTCGATCCGATCTGGT
*
20318419 CTTAGAC-TGGAAATGAACTCCATATGC
1 CTTAGACATGG-AATGAACTCCGTATGC
20318446 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 50, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
157 2 0.01
158 97 0.35
159 123 0.44
160 58 0.21
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGAGCTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCT
GCTACTGCAACCCTCGATCCGATCTGGT
Found at i:20318460 original size:26 final size:26
Alignment explanation
Indices: 20318419--20318471 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20318409 CCGATCTGGT
20318419 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
20318445 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
20318471 C
1 C
20318472 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:20318814 original size:26 final size:26
Alignment explanation
Indices: 20318774--20318826 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20318764 CTGGTTTGAT
20318774 CTTAGACTTGAAATGAACTCCGTATG
1 CTTAGACTTGAAATGAACTCCGTATG
20318800 CTTAGACATTG-AATGAACTCCGTATG
1 CTTAGAC-TTGAAATGAACTCCGTATG
20318826 C
1 C
20318827 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGAAATGAACTCCGTATG
Found at i:20318962 original size:857 final size:842
Alignment explanation
Indices: 20317390--20319366 Score: 2377
Period size: 857 Copynumber: 2.3 Consensus size: 842
20317380 CTCGATCTGA
* * *
20317390 CTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * *
20317455 CATGAAATGGGCATGCGGGCACTCAGTTAGCCGGAGAGGCAAATTCT-CAAGCCGGGGACCGGCT
66 CATGAAACGGGCGTGCGGGCGCTCAGCTA-TCGGAGAGGCAGATTCTGCAAGCCGGGGATC-GCT
* *
20317519 TGATCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGA-CCGGTCTGATCTTAGACTA
129 CGATCCCC-CTGCGTGCTGTCGATCCTGCTATCGCAACCCTC-GATCCGGTCTGATCTTAGACT-
* * *
20317583 GGAATGAACTCTGTACGCTTAGACTAGGGATGAACTCCGTATTTCTAAGTCAACCCATGAAACGA
191 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACGA
* * *
20317648 GCGTGCGGGCGCTCAG-C--CGACTGGAGAGGCATAATGCGCAAGTCGGGGATCAACCTGGTCCC
256 GCGTGCGGACGCTCAGCCGACGACTGGAGAGGCATAATACGCAAGTCGGGGATCAACCTGATCCC
20317710 CCTCTGTGTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCC
321 CCTCTGTGTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCC
* * *
20317775 TAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAACCGGCCGGAGAGGCAAAATGAAAAAGCTG
386 TAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGCCGGAGAGGCAAAATGAAAAAGCTA
* ** * * * ** *
20317840 GGGATCGGTCTAGTCCCCCCTGTGTGCTGCCGATCCTGCTGCTGGTATTGTTGTCACAACCATCT
451 GGGATCGGTCCAGTCCCCCCTACGTGCTACAGATCCTGCTGCTGGTACTACTGTCACAACCATCG
* *
20317905 ATCCAGTTTGATCTTAGACTGCGAATCAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGC
516 ATCCAGTTTGATCTTAGACTGCAAATCAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGC
* * * * * *
20317970 TTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCGATCGATCGGAGAGGCAGAATGCGCAAGCC
581 CTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCC
* * * * * * * *
20318035 TGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCGATCTGA
646 GGGGACCGACCCGATCCCCCCTGTCTGCTATCCATCCTGCTACCGCAACCCTCGATCAGATCTAA
* * * *
20318100 TCTTAGACTGGGAATGAACTTCGTATGCCTAACTCAACCCATGAAACAAGTGCGCGGGTGCTGAG
711 TCTTAGAATGGGAATGAACTT-GTATGCCTAACTCAACCCATGAAACAAGCGCACGGGTGCTAAG
* * * * *
20318165 CCGACCGGAGAGGCATAATGTGCAAGCTGGGGATTGACCCGATCCCCCTCTGCGTGCTATCGACC
775 CCGACCGGAGAGGCATAATGCGCAAACCGGGGATCGACCCGATCCCCCTCTACGTGCTATCGACC
20318230 CCG
840 CCG
*
20318233 TTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
*
20318298 CATGAAACGGGGCGTGCGGGCGCTCAGCCTATCGGAGAGGCAGATTGTGCAAGCCGGGGATCGAC
66 CATGAAAC-GGGCGTGCGGGCGCTCAG-CTATCGGAGAGGCAGATTCTGCAAGCCGGGGATCG-C
* * * *
20318363 TCGATCCCTCCTGCATGCTATCGATCCTGCTA-CTGCAACCCTCGATCCGATCTGGTCTTAGACT
128 TCGATCCC-CCTGCGTGCTGTCGATCCTGCTATC-GCAACCCTCGATCCGGTCTGATCTTAGACT
** * *
20318427 GGAAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
191 GG-AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACG
20318492 AGCGTGCGGACGCTCAGCCGATCGTAGAGGCTAGCCAGAGAGGCATAATACGCAAG-CTGGGGAT
255 AGCGTGCGGACGCTCAGCCGA-C---GA--CT-G---GAGAGGCATAATACGCAAGTC-GGGGAT
*
20318556 C-AGCTCGATCCCCCTCT-TCGTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAT
309 CAACCT-GATCCCCCTCTGT-GTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAT
** * * *
20318619 GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCA
372 GAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGCCGGAGAGGCA
* * * *
20318684 GAATGCACAAGCTAGGGATC-GTCCCAGT-CCCCCTACGTGCTACAGATCCTGCTGCTGGTCCTA
437 AAATGAAAAAGCTAGGGATCGGT-CCAGTCCCCCCTACGTGCTACAGATCCTGCTGCTGGTACTA
* * ** * *
20318747 CTG-CAGCAACCTTCGGTCTGGTTTGATCTTAGACTTG-AAATGAACTCCGTATGCTTAGACATT
501 CTGTCA-CAACCATCGATCCAGTTTGATCTTAGAC-TGCAAATCAACTCCGTATGCTTAGACATG
** *
20318810 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCTCTCAACCGACCGGAGA
564 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGGAGA
* * *
20318875 GGCAGAATGCATAAGTCGGGGACC-AGCCCGATCCCCCCCTG-CTGCTATCCATCTTGCTACCGC
629 GGCAGAATGCACAAGCCGGGGACCGA-CCCGAT-CCCCCCTGTCTGCTATCCATCCTGCTACCGC
* * *
20318938 AACCCTCGGTTCAG-TCTAATCTTAGAATGGGAATGAAGTTGTATGCCTAACTCAACCCGTGAAA
692 AACCCTC-GATCAGATCTAATCTTAGAATGGGAATGAACTTGTATGCCTAACTCAACCCATGAAA
** * * *** *
20319002 TGAGCGTACGGGTGCTAAGTCGGTTGGAGAGGCATAATGCGCAAACCGGGGATCGACCCGGTCCC
756 CAAGCGCACGGGTGCTAAGCCGACCGGAGAGGCATAATGCGCAAACCGGGGATCGACCCGATCCC
* *
20319067 CCTCTACGTGCTGTCGATCCCG
821 CCTCTACGTGCTATCGACCCCG
* * * * *
20319089 CTACCACAACCCTCAGTCCGACT-GGTCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACC
1 CTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * * * * * *
20319153 CATGAAACGGGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAGTCCGTAAGCCAGGGAATAGCC
66 CATGAAACGGGCGTGCGGGCGCTCAG-CTATCGGAGAGGCAGATTCTGCAAGCC-GGGGATCGCT
* * * * * * * * * *
20319218 CGGTCCCCCTACGTGCTGCCGATCGTGCTATGGCAACCCTTGGTCTGGGCTAATCTTAGACTGGG
129 CGATCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACT-GG
* * * *
20319283 AATGAACTTTGTATGCTTAGACTGGGGATGAACTCTGTATTCCTAAGTCAACCCATAAAACAAGC
193 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACGAGC
20319348 GTGCGGACGCTCAGCCGAC
258 GTGCGGACGCTCAGCCGAC
20319367 CAGAGAGGCA
Statistics
Matches: 962, Mismatches: 139, Indels: 57
0.83 0.12 0.05
Matches are distributed among these distances:
843 68 0.07
844 36 0.04
845 137 0.14
846 2 0.00
849 1 0.00
852 3 0.00
853 116 0.12
854 49 0.05
855 54 0.06
856 114 0.12
857 211 0.22
858 171 0.18
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (842 bp):
CTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CATGAAACGGGCGTGCGGGCGCTCAGCTATCGGAGAGGCAGATTCTGCAAGCCGGGGATCGCTCG
ATCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGAAT
GAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACGAGCGTG
CGGACGCTCAGCCGACGACTGGAGAGGCATAATACGCAAGTCGGGGATCAACCTGATCCCCCTCT
GTGTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACAAAACGAGCGTACGGGCGCTCAACCAGCCGGAGAGGCAAAATGAAAAAGCTAGGGAT
CGGTCCAGTCCCCCCTACGTGCTACAGATCCTGCTGCTGGTACTACTGTCACAACCATCGATCCA
GTTTGATCTTAGACTGCAAATCAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGA
CCGACCCGATCCCCCCTGTCTGCTATCCATCCTGCTACCGCAACCCTCGATCAGATCTAATCTTA
GAATGGGAATGAACTTGTATGCCTAACTCAACCCATGAAACAAGCGCACGGGTGCTAAGCCGACC
GGAGAGGCATAATGCGCAAACCGGGGATCGACCCGATCCCCCTCTACGTGCTATCGACCCCG
Found at i:20319220 original size:158 final size:157
Alignment explanation
Indices: 20318800--20319241 Score: 392
Period size: 158 Copynumber: 2.8 Consensus size: 157
20318790 ACTCCGTATG
* * * * * **
20318800 CTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCTCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGT
** * * ** * * * * *
20318865 CGACCGGAGAGGCAGAATGCATAAGTCGGGGACCAGCCCGATCCCCCCCTGC-TGCTATCCATCT
66 CGGTCGGAGAGGCAGAATGCGTAAG-CCGGGAATAGCCCGGT-CCCCCCTACGTGCTGTCGATCC
* * * *
20318929 TGCTACCGCAACCCTCGGTTCAGTCTAAT
129 CGCTACCACAACCCTCAGTTCAGACTAAT
* * * * * *
20318958 CTTAGA-ATGGGAATGAAGT-TGTATGCCTAA-CTCAACCCGTGAAATGAGCGTACGGGTGCTAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * *
20319020 GTCGGTTGGAGAGGCATAATGCGCAAACCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGAT
64 GTCGGTCGGAGAGGCAGAATGCGTAAGCCGGGAATAG-CCCGGTCCCCC-CTACGTGCTGTCGAT
* **
20319085 CCCGCTACCACAACCCTCAG-TCCGACTGGT
127 CCCGCTACCACAACCCTCAGTTCAGACTAAT
* * *
20319115 CTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAACGGGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGT
* * *
20319180 CGGTCGGAGAGGCAGAGTCCGTAAGCCAGGGAATAGCCCGGT-CCCCCTACGTGCTGCCGATC
66 CGGTCGGAGAGGCAGAATGCGTAAGCC-GGGAATAGCCCGGTCCCCCCTACGTGCTGTCGATC
20319242 GTGCTATGGC
Statistics
Matches: 220, Mismatches: 55, Indels: 20
0.75 0.19 0.07
Matches are distributed among these distances:
156 26 0.12
157 85 0.39
158 103 0.47
159 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGT
CGGTCGGAGAGGCAGAATGCGTAAGCCGGGAATAGCCCGGTCCCCCCTACGTGCTGTCGATCCCG
CTACCACAACCCTCAGTTCAGACTAAT
Found at i:20319308 original size:26 final size:26
Alignment explanation
Indices: 20319272--20319322 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20319262 CTGGGCTAAT
*
20319272 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
20319298 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
20319323 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20321389 original size:26 final size:26
Alignment explanation
Indices: 20321340--20321392 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20321330 GTTGACTTAG
**
20321340 GCATACAGAGTTCATCTCTGGTCTAA
1 GCATACAGAGTTCATCTCCAGTCTAA
20321366 GCATACAGAGTTCAT-TCCCAGTCTAA
1 GCATACAGAGTTCATCT-CCAGTCTAA
20321392 G
1 G
20321393 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTCTAA
Found at i:20321668 original size:159 final size:158
Alignment explanation
Indices: 20321366--20321863 Score: 416
Period size: 159 Copynumber: 3.1 Consensus size: 158
20321356 TCTGGTCTAA
* *** * * * *
20321366 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCAGACCGAGGTTTG-TGGCAGCAAGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACTGAGGGTTGCT-GCAACAAGATCGA
* * * * * * * * * * * * * *
20321429 TAGCACGAAGGGGAGGACTGAGTCGATCCCCCGCTTACGCATTTTACCTCTCCGATCGGCTAAGC
64 CAGCACGCAGAGG-GGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGACCGACTCAGC
* * * * *
20321494 ACCCGCATGCCCGTTTCGTGGGTCGGCTTAG
128 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * * * * * **
20321525 GTATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACTGTGGGTTG-TGGTAGCGGGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACTGAGGGTTGCT-GCAACAAGATC-G
* *
20321587 ACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCT-TTTCGACCGACTCA
63 ACAGCACGCAGA-GGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCT-GACCGACTCA
* *
20321651 GGGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* *
20321684 GCATACGGAGTTCATT-CATAGTCTAAGATCAGACCGGACTGAGGGTTGCTGCAACAAGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCAGACTGAGGGTTGCTGCAACAAGATCGAC
* * * * *
20321748 AGCACGTAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGC
65 AGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGC
** *
20321813 CCATACACTCGTTTTGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
20321842 GCATACGGAGTTCATTCCATGT
1 GCATACGGAGTTCATTCCATGT
20321864 TGAAGCATAT
Statistics
Matches: 268, Mismatches: 60, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
158 99 0.37
159 164 0.61
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACTGAGGGTTGCTGCAACAAGATCGACA
GCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGCC
CGCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:20322259 original size:26 final size:26
Alignment explanation
Indices: 20322212--20322261 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20322202 GACTTAGGCA
*
20322212 TATGAAGTTCATCCCCAGTCTAAGCG
1 TATGAAGTTCATCCCCAATCTAAGCG
* *
20322238 TATGAAGTTCATTCCTAATCTAAG
1 TATGAAGTTCATCCCCAATCTAAG
20322262 ATCGGATTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (26 bp):
TATGAAGTTCATCCCCAATCTAAGCG
Found at i:20322543 original size:159 final size:158
Alignment explanation
Indices: 20322271--20322737 Score: 512
Period size: 159 Copynumber: 2.9 Consensus size: 158
20322261 GATCGGATTG
** * * * * *
20322271 GACCGAGGGTTACGACAGCAAGATCGACAGCATGTAGGGGGGACCGGGCCGATCCCCGGCTTACG
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-GGGGGATCGGGCCGATCCCCGGCTTACG
* * * * *
20322336 CATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACG-TCGATTTCGTGGGTTGGCTTAGGCATAGG
65 CATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACG
*
20322400 GAGTTCATTCCATGTCTAAGCCCCA-ATCGA
129 GAGTTCATTCCATGTCTAAGCACCAGA-CGA
* ** *
20322430 -ACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGCGGGATCGGGCCGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-G-GGGATCGGGCCGATCCCCGGCTTAC
* * * * * * *
20322494 GCATTATGCCTCTTCGGTCGGCTCAGCTCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATATG
64 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
20322559 GAGTTCATTCC-TAGTGTAAG-ATCAGACTA
129 GAGTTCATTCCAT-GTCTAAGCACCAGACGA
** * * * * *
20322588 GATTGAGGGTTGTGGCAGTAGGATCGACAGCACGTAGGGGGATCGGGCCGATCCCTGACTTACAC
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGATCGGGCCGATCCCCGGCTTACGC
* * *
20322653 ATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGTCATAGGCATACGGA
66 ATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
20322718 GTTCATTCCATGTCTAAGCA
131 GTTCATTCCATGTCTAAGCA
20322738 TATAGAGTTC
Statistics
Matches: 253, Mismatches: 47, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
157 94 0.37
158 35 0.14
159 121 0.48
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGATCGGGCCGATCCCCGGCTTACGC
ATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAGACGA
Found at i:20322738 original size:26 final size:26
Alignment explanation
Indices: 20322709--20322761 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20322699 GTTGTCATAG
*
20322709 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20322735 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20322761 G
1 G
20322762 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20323462 original size:26 final size:26
Alignment explanation
Indices: 20323432--20323484 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20323422 GTTGACTTAG
*
20323432 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20323458 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20323484 G
1 G
20323485 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20323760 original size:159 final size:158
Alignment explanation
Indices: 20323458--20323961 Score: 376
Period size: 158 Copynumber: 3.2 Consensus size: 158
20323448 CCCAGTCTAA
* * * * * *
20323458 GCATACGAAGTTCATTCC-TAGTCTAAG-ATCGGACCGGACCGAGGGTTGC-GACAGTAGGATTG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCAAGGGTTGCAG-CACTAGGATCG
* * * * * *** * * * * ** ***
20323520 ACAACACGCAGGGGGGATCAGGCCGATCCCTGGCTTACGCATTCTGCCTTTCCAGCCAGCTGTGC
64 ACAGCATGCAGGGGGGACCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCTGGCTCAAC
**
20323585 GCCCGCACGCCCGTTTCATGGGTTAGCTTAG
129 GCCCGCACGCTTGTTTCATGGGTT-GCTTAG
* * * * * ** * *
20323616 GCATAGGGAGTTTATTCCATGTCTAAGCCCCA-ATCGGACCGAGGGTTGTGGCAGC-GGGATCGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGCAGCA-CTAGGATCGA
* * * * *
20323679 TAGCATGCAGAGGGGGACCGGGTTGATCCCCGACTTTCGTATTATGCCTCTCCGG-TCGGCTCAA
65 CAGCATGCAG-GGGGGACCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCT-GGCTCAA
*
20323743 CGCCCGCACGCTTGTTTCATGGGTTGACTTAT
128 CGCCCGCACGCTTGTTTCATGGGTTG-CTTAG
** *
20323775 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGACCGGATCAAGGGTTGCAGCACTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCAAGGGTTGCAGCACTAGGATCGA
* * * * * * **
20323838 CAGCATGCAGGGGGGACCGGGTCGATTCCCAACTTGCGCATTCTTCCTCTTCGGCTGGTTGAGTG
65 CAGCATGCAGGGGGGACCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCTGGCTCAACG
* * *
20323903 CCCACACACTTGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTTGTTTCATGGGTT-GCTTAG
*
20323933 GCATATGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
20323962 TACGGAGTTC
Statistics
Matches: 268, Mismatches: 64, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 141 0.53
159 121 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGCAGCACTAGGATCGAC
AGCATGCAGGGGGGACCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCTGGCTCAACGC
CCGCACGCTTGTTTCATGGGTTGCTTAG
Found at i:20323969 original size:26 final size:26
Alignment explanation
Indices: 20323933--20323985 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20323923 GTTGGCTTAG
*
20323933 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20323959 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20323985 G
1 G
20323986 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20325070 original size:159 final size:159
Alignment explanation
Indices: 20324615--20325153 Score: 533
Period size: 159 Copynumber: 3.4 Consensus size: 159
20324605 GTTCTCTGGT
* * *
20324615 CGGCTAAGC-GCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1 CGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
20324679 AGATCAGACCGGACCGAGGGTTG-CGACAGCAAGATTGGCA--ACACTTAGGGGGGATCGGG-TC
66 AGATCAGATCGGACCGAGGGTTGTAG-CAGCAGGATCGGCAGCACACATA-GGGGGATCGGGCT-
* * *
20324740 GATCCTTAGCTTGCGCATTCTACCTCTCCGAT
128 GATCCCTAGCTTGCGCATTCTGCCTCTCCGAC
* * * * *
20324772 CGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG-T--TT-CCATGTCT
1 CGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCT
** * * * * * * * * * * *
20324833 AAGCCCCAG-TTGGATCGAGGGTTGTGGCAGTAGGACCGGTAGCACATAGAGGGGGATCAGACCG
65 AAG-ATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGGCAGCACACATAGGGGGATCGGGCTG
* *
20324897 ATCCCTGGCTTGCGCATTATGCCTCTCCGAC
129 ATCCCTAGCTTGCGCATTCTGCCTCTCCGAC
* ** * * *
20324928 CGGCTCAGTGCCAGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCCCAGCCTA
1 CGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
20324993 AGATCAGATCAGACCGAGGGTTGTAGCAACAGGATCGACAGCACGCATAGGGGGATCGGGCTGAT
66 AGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGGCAGCACACATAGGGGGATCGGGCTGAT
* *
20325058 CCCCAGCTTGCGCATTCTGCCTCTCCGGC
131 CCCTAGCTTGCGCATTCTGCCTCTCCGAC
* * *
20325087 TGGCTAAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
1 CGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCT
20325151 AAG
65 AAG
20325154 CATTTGGAGT
Statistics
Matches: 299, Mismatches: 70, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
154 3 0.01
155 30 0.10
156 81 0.27
157 13 0.04
158 40 0.13
159 129 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
CGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGGCAGCACACATAGGGGGATCGGGCTGAT
CCCTAGCTTGCGCATTCTGCCTCTCCGAC
Found at i:20325507 original size:26 final size:26
Alignment explanation
Indices: 20325471--20325520 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20325461 GACTTAGGCA
20325471 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
* *
20325497 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
20325521 ATTGGACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:20326167 original size:26 final size:26
Alignment explanation
Indices: 20326138--20326188 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20326128 GTTGACTTAG
20326138 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
20326164 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20326189 CGATCAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20326517 original size:26 final size:26
Alignment explanation
Indices: 20326481--20326533 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20326471 GTTGGCTTAG
20326481 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
20326507 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
20326533 G
1 G
20326534 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:20327533 original size:159 final size:159
Alignment explanation
Indices: 20327356--20327703 Score: 366
Period size: 159 Copynumber: 2.2 Consensus size: 159
20327346 TGGGATGGCC
* * *** * * *
20327356 TAGGCATAGGGAGTTCATTCCATGTCTAAG-TCCCAACCCGATTGAGGGTTGTGGCAGCGGGACC
1 TAGGCATACGGAGTTCATTCCATGTCTAAGAT-CCAACCAGACCAAGGGTTGCGACAGCAGGACC
* * * *
20327420 GA-TAACACGTAGAGGGG-GATTGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCT
65 -ATTAACACGCAG-GGGGCGATCGGGTCGATCCCCGACTTCCGCATTATACCTCTCCGACCAGCT
* *
20327483 TAGC-ACT-CACATGCTCGTTTCATGGGTTGACT
128 GAGCGACTGCAC--GCTCGTTTCATAGGTTGACT
* ** *
20327515 TAGGCATACGAAGTTCATTCC-TAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCAGGATC
1 TAGGCATACGGAGTTCATTCCAT-GTCTAAGATCCAACCAGACCAAGGGTTGCGACAGCAGGACC
* * * * * *
20327579 ATTAGCACGCAGGGGGCGATCGGGTCGGTCCCCGACTTCCGTATTCTACCTCTCCGATCGGCTGA
65 ATTAACACGCAGGGGGCGATCGGGTCGATCCCCGACTTCCGCATTATACCTCTCCGACCAGCTGA
* *
20327644 GCGCCTGCACGCTCGTTTCATAGGTTGGCT
130 GCGACTGCACGCTCGTTTCATAGGTTGACT
20327674 TAGGCATACGGAGTTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCATGTCTAAG
20327704 CATACGGAGT
Statistics
Matches: 155, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
158 6 0.04
159 142 0.92
160 4 0.03
161 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (159 bp):
TAGGCATACGGAGTTCATTCCATGTCTAAGATCCAACCAGACCAAGGGTTGCGACAGCAGGACCA
TTAACACGCAGGGGGCGATCGGGTCGATCCCCGACTTCCGCATTATACCTCTCCGACCAGCTGAG
CGACTGCACGCTCGTTTCATAGGTTGACT
Found at i:20327707 original size:26 final size:25
Alignment explanation
Indices: 20327677--20327728 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
20327667 GTTGGCTTAG
20327677 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
20327703 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
20327728 G
1 G
20327729 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:20327915 original size:26 final size:26
Alignment explanation
Indices: 20327885--20327937 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20327875 GTTGACTTAG
20327885 GCATATGAAGTTCATCCCCAATCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
* * *
20327911 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
20327937 G
1 G
20327938 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAATCTAA
Found at i:20328628 original size:26 final size:26
Alignment explanation
Indices: 20328592--20328644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20328582 GTTGACTTAG
20328592 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20328618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20328644 G
1 G
20328645 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20328631 original size:707 final size:709
Alignment explanation
Indices: 20327184--20328646 Score: 1753
Period size: 708 Copynumber: 2.1 Consensus size: 709
20327174 CCGCATGCTC
* * **
20327184 GTTCATCCCTAGTCTAAGCATAAGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTG
1 GTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* * **
20327249 CGACAGCAGGATCGACAGCACGAAGGGGGGACCGGGCCGATCCTCAGCTTGTGCATTCTACCTCT
66 CGACAGCAGGATCGACAGCACGAAGGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCT
** * ** *
20327314 CTGGTCGGTTGAGCGCCCGCATGCCCATTTCGTGGGATGGCCTAGGCATAGGGAGTTCATTCCAT
131 CCAGTCGGCTGA-CGCCCGCACACCCATTTCATGGGATGGCCTAGGCATAGGGAGTTCATTCCAT
* * ** * ** * **
20327379 GTCTAAGTCCCAACCCGATTGAGGGTTGTGGCAGCGGGACCGATAACACGTAGAGGGGGATTGGG
195 GTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGATAACACACAGAAGGGGACCGGG
* * * *
20327444 TCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTTAGCACTCACATGCTCGTTTCATGGG
260 TCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCACCCACACGCTCGTTTCATGAG
* * *
20327509 TTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCA
325 TTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCGACAGCA
* * *
20327574 GGATCATTAGCACGCAGGGGGCGATCGGGTCGGTCCCCGACTTCCGTATTCTACCTCTCCGATCG
390 GGATCATTAGCACGCAGGGGGCGATCAGGTCGGTCCCCGACTTCCGCACTCTACCTCTCCGATCG
* *
20327639 GCTGAGCGCCTGCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
455 ACTGAGCGCCTGCACGCTCGTTTCATAGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
20327704 CATACGGAGTTCATTCCAGTCTAAGATTAGATCGGACTAAGGGTTACGGGAACAAGACCCGCAGT
520 CATACGGAGTTCATTCCAGTCTAAGATGAGATCGGACTAAGAGTTACGGGAACAAGACCAGCAGT
* * *
20327769 AGGATTGGTAGCACGCAGGGGGGACCAGGCCGATCCCTGACATGTGCATTATGCCTCTCCGATCG
585 AGGATTGGTAGCACGCAGGGGGGACCAGGCCGATCCCTCACATGCGCATTATACCTCTCCGATCG
* * * *
20327834 GCCTCTCCGGTCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGAA
650 ACCTCTCCGGTCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAA
* * * *
20327894 GTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTG
1 GTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* ** ** * *
20327959 CGACAGCAGGATTGGTAGCACGCCGGGGGGACCAGGCCGATCCCC-GACTTACGCATTTTGCCTC
66 CGACAGCAGGATCGACAGCACGAAGGGGGGACCAGGCCGATCCCCAG-CTTACGCATTCTACCTC
* ** * * **
20328023 TCCAGTCGGCTGA-GCTCGCACACCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTGT
130 TCCAGTCGGCTGACGCCCGCACACCCATTTCATGGGATGGCCTAGGCATAGGGAGTTCATTCCAT
** * *
20328087 GTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGATAGCATACAGAAGGGGACCGGG
195 GTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGATAACACACAGAAGGGGACCGGG
* * **** *
20328152 TCGATCCCC-AGCTTGTGCATTATGCCTCTCTGGTTGGCTCAGCACCCGA-ACGCTCGTTTCGTG
260 TCGATCCCCGA-CTTGCGCATTATGCCTCTCCGACCAGCTCAGCACCC-ACACGCTCGTTTCATG
* ** * *
20328215 AGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGTTGTGACGG
323 AGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCGACAG
* * * *
20328280 TAGGATCGA-TAGCACGCAGGGGG-GATCAGGTCGGTCCCCGACTTGCGCACTCTGCCTCTCTG-
388 CAGGATC-ATTAGCACGCAGGGGGCGATCAGGTCGGTCCCCGACTTCCGCACTCTACCTCTCCGA
* * *
20328342 GCTGATTGAGTGCCTGCACGCTCGTTTCAT-GGATTAGCTTAGGCATACGGAGTTCATTCCATGT
452 TC-GACTGAGCGCCTGCACGCTCGTTTCATAGG-TTAGCTTAGGCATACGGAGTTCATTCCATGT
* * * * ** * * *
20328406 CTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGCT-GGACTGATAGTTGTGGTAGCAGGAC
515 CTAAGCATACGGAGTTCATT-CCAGTCTAAGAT-GAGATCGGACTAAGAGTTACGGGAACAAGAC
* * * * ** * *
20328470 CAGTAGTAGGA-TGGTAGCATGCAGGGGGGATCGGGTTGATCCC-CATCTTGCGCATTCTACCTC
578 CAGCAGTAGGATTGGTAGCACGCAGGGGGGACCAGGCCGATCCCTCA-CATGCGCATTATACCTC
* ** *
20328533 TTCG-TCCGACCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
642 TCCGAT-CGACCTCTCCGGTCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
*
20328597 CGGA
706 CGAA
*
20328601 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 GTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAT
20328647 TTTGAGCCAC
Statistics
Matches: 632, Mismatches: 111, Indels: 23
0.83 0.14 0.03
Matches are distributed among these distances:
706 5 0.01
707 248 0.39
708 255 0.40
709 6 0.01
710 118 0.19
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (709 bp):
GTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
CGACAGCAGGATCGACAGCACGAAGGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCT
CCAGTCGGCTGACGCCCGCACACCCATTTCATGGGATGGCCTAGGCATAGGGAGTTCATTCCATG
TCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGATAACACACAGAAGGGGACCGGGT
CGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCACCCACACGCTCGTTTCATGAGT
TGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCGACAGCAG
GATCATTAGCACGCAGGGGGCGATCAGGTCGGTCCCCGACTTCCGCACTCTACCTCTCCGATCGA
CTGAGCGCCTGCACGCTCGTTTCATAGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGGAGTTCATTCCAGTCTAAGATGAGATCGGACTAAGAGTTACGGGAACAAGACCAGCAGTA
GGATTGGTAGCACGCAGGGGGGACCAGGCCGATCCCTCACATGCGCATTATACCTCTCCGATCGA
CCTCTCCGGTCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAA
Found at i:20329341 original size:26 final size:26
Alignment explanation
Indices: 20329312--20329364 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20329302 GTTGACTTAG
20329312 GCATACAGAGTTTA-TCTCCAGTCTAA
1 GCATACAGAGTTTATTCT-CAGTCTAA
**
20329338 GCATATGGAGTTTATTCTCAGTCTAA
1 GCATACAGAGTTTATTCTCAGTCTAA
20329364 G
1 G
20329365 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTTATTCTCAGTCTAA
Found at i:20329615 original size:22 final size:22
Alignment explanation
Indices: 20329590--20329640 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
20329580 GCTGATCCTT
*
20329590 GGCTTGCGCATTATGCCTCTTC
1 GGCTGGCGCATTATGCCTCTTC
*
20329612 GGCTGGCTCATTATGCCTCTTC
1 GGCTGGCGCATTATGCCTCTTC
20329634 GGCTGGC
1 GGCTGGC
20329641 TCAGCACCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.08, C:0.31, G:0.27, T:0.33
Consensus pattern (22 bp):
GGCTGGCGCATTATGCCTCTTC
Found at i:20329641 original size:22 final size:22
Alignment explanation
Indices: 20329598--20329643 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
20329588 TTGGCTTGCG
20329598 CATTATGCCTCTTCGGCTGGCT
1 CATTATGCCTCTTCGGCTGGCT
20329620 CATTATGCCTCTTCGGCTGGCT
1 CATTATGCCTCTTCGGCTGGCT
20329642 CA
1 CA
20329644 GCACCTGCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.11, C:0.33, G:0.22, T:0.35
Consensus pattern (22 bp):
CATTATGCCTCTTCGGCTGGCT
Found at i:20330251 original size:26 final size:26
Alignment explanation
Indices: 20330215--20330267 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20330205 GTTGACTTAG
*
20330215 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAATCTAA
* * *
20330241 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTAATCCCCAATCTAA
20330267 G
1 G
20330268 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAATCTAA
Found at i:20330959 original size:26 final size:26
Alignment explanation
Indices: 20330907--20330959 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20330897 GTTAACTTAG
*
20330907 GCATACAGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCAATTCTAA
20330933 GCATAC-GAAGTTCATTCCCAATT-TAA
1 GCATACAG-AGTTCA-TCCCAATTCTAA
20330959 G
1 G
20330960 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 16 0.67
27 7 0.29
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAATTCTAA
Found at i:20331390 original size:11 final size:11
Alignment explanation
Indices: 20331371--20331403 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20331361 ACCCGGGCAC
20331371 CATCGTCGGAG
1 CATCGTCGGAG
*
20331382 CATCATCGGAG
1 CATCGTCGGAG
20331393 CATCGTCGGAG
1 CATCGTCGGAG
20331404 AGCCTAACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20332555 original size:26 final size:26
Alignment explanation
Indices: 20332525--20332577 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20332515 GTTGACTTAG
*
20332525 GCATATAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
20332551 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
20332577 G
1 G
20332578 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:20333112 original size:26 final size:26
Alignment explanation
Indices: 20333082--20333134 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20333072 GTTTACTTAG
*
20333082 GCATACGGAGTTC-GTCCCTAGTCTAA
1 GCATACGAAGTTCAGTCCC-AGTCTAA
*
20333108 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
20333134 G
1 G
20333135 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAA
Found at i:20333409 original size:159 final size:158
Alignment explanation
Indices: 20333151--20333442 Score: 374
Period size: 159 Copynumber: 1.8 Consensus size: 158
20333141 CTGGACTGAG
* * *
20333151 GGTTGCGGCAGCAGGATCGGCAGCACGAAGGGGGGACCGAGCCGATCCTCGGCTTTTGCATTCTG
1 GGTTGCGGCAGCAGGATCGACAGCACGAAGGGGGGACCGAGCCGATCCTCGGCTTGTGCATTATG
* ** * * * * *
20333216 CCTCTTCGGCCGGCTGAGCGACCGCATGCTCGTTTCATGGGTT-AGCTTAGGCATAGGGAGTTCA
66 CCTCCTCGGCCAACTCAGCGACCCCACGCTCGTTTCATGAGTTGA-CTTAGGCATACGGAGTTCA
20333280 TTCCATGTTTGAGCCCCAGCTACGCCGAC
130 TTCCATGTTTGAGCCCCAGCTACGCCGAC
* * * * *
20333309 GGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCC-CTGGCTTGTGCATTA
1 GGTTGCGGCAGCAGGATCGACAGCACGAAG-GGGGGACCGAGCCGATCCTC-GGCTTGTGCATTA
*
20333373 TGCCTCACT-GGCCAACTCAGCGCCCCCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTT
64 TGCCTC-CTCGGCCAACTCAGCGACCCCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTT
20333437 CATTCC
128 CATTCC
20333443 CAGTCTAAGA
Statistics
Matches: 113, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
158 27 0.24
159 84 0.74
160 2 0.02
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.23
Consensus pattern (158 bp):
GGTTGCGGCAGCAGGATCGACAGCACGAAGGGGGGACCGAGCCGATCCTCGGCTTGTGCATTATG
CCTCCTCGGCCAACTCAGCGACCCCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCAT
TCCATGTTTGAGCCCCAGCTACGCCGAC
Found at i:20334674 original size:26 final size:26
Alignment explanation
Indices: 20334638--20334688 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20334628 TGACTTAGGC
*
20334638 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAATCTAAGT
*
20334664 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATCCCCAATCTAAG
20334689 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGT
Found at i:20335136 original size:158 final size:157
Alignment explanation
Indices: 20334699--20335159 Score: 428
Period size: 158 Copynumber: 2.9 Consensus size: 157
20334689 ATCAGACCGA
* * * * *
20334699 ACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAAGGGGGA-CGAGGCCGTTCCCCGACTTACG
1 ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAAGGGGGATCG-GGCTGATCCCCGACTTGCG
* * * * * * * *
20334763 CATTCTGCCTGTCCGGCCGACTGAGTGCCCGTACACCCGTTTTGTGGGTTGGCTTAGGCATAGGG
65 CATTCTACCTCT-CTGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CG
* * *
20334828 AGTTCATT-CTATGTCTAAGCCCCAGTCGG
128 AGTTCATTCCTATGTCAAAGACCCAATCGG
* * * * * *
20334857 ACCGAGGGTTGTGGTAGCGGGACCGGCAGCACACAGAGGGGGATCGGGCTGATCCCCGACTTGTG
1 ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA-AGGGGGATCGGGCTGATCCCCGACTTGCG
* * * * * * * * *
20334922 CATTATCCCTCTCTGGCTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG
65 CATTCTACCTCTCT-GCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-G
*** *
20334987 AGTTCATTCCTA-GTCAAAGATTGAATTGG
128 AGTTCATTCCTATGTCAAAGACCCAATCGG
* * * * *
20335016 ATCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAAGGGGGATTGGGCTGATCCCC-AGCTTGCA
1 ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAAGGGGGATCGGGCTGATCCCCGA-CTTGCG
* *
20335080 CATTCTACCTCTCTGATCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGC
65 CATTCTACCTCTCTG-CCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-
20335145 AGTTCATTCC-ATGTC
128 AGTTCATTCCTATGTC
20335160 TAAGCATACG
Statistics
Matches: 238, Mismatches: 56, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 116 0.49
159 113 0.47
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAAGGGGGATCGGGCTGATCCCCGACTTGCGC
ATTCTACCTCTCTGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGT
TCATTCCTATGTCAAAGACCCAATCGG
Found at i:20335189 original size:26 final size:26
Alignment explanation
Indices: 20335137--20335189 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20335127 GTTGGCTTAG
*
20335137 GCATACGCAGTTCATTCCATGTCTAA
1 GCATACGCAGTTCATTCCATGTATAA
*
20335163 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGCAGTTCATT-CCATGTATAA
20335189 G
1 G
20335190 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCATGTATAA
Found at i:20335548 original size:26 final size:26
Alignment explanation
Indices: 20335518--20335570 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20335508 GTTGACTTAG
20335518 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
20335544 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20335570 G
1 G
20335571 AATGGTAGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20335832 original size:159 final size:159
Alignment explanation
Indices: 20335638--20336014 Score: 390
Period size: 158 Copynumber: 2.4 Consensus size: 159
20335628 TCGGCTGAAT
* * * * *
20335638 GCCCGTACGCCCGTTTCATGGGTTGGCTT-TGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAG
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAT-GCATAGGGAGTTCATTCCATGTCTAAGCACCAG
* * ** * * * *
20335702 -CCAGACCGAGGGTTGTGGCAGCGGGA-CTGGTAGCACGTAGAGGGGGATCGGGCTGATCCCTGG
65 ACCAGAACGAAGGTTGCAGCAGCAGGATC-GATAGCACGTAG-GGGGGACCGGGCTGATCCCTAG
* *
20335765 CTTGCGCGTTATGCCTCTTCGGCC-AGCTCAAC
128 CTTGCGCATTATGCCTCTCCGGCCGA-CTCAAC
* * * *
20335797 GCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCA-GTCTAAG-ATCAG
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTC-CATGTCTAAGCACCAG
* * *
20335860 ATCGGAACGAAGGTTGCAGCAGCAGGATCGATAGCATGTAGGGGGGACCGGGCTGATCCCTAGCT
65 ACCAGAACGAAGGTTGCAGCAGCAGGATCGATAGCACGTAGGGGGGACCGGGCTGATCCCTAGCT
* * *
20335925 TGCGCATTCTGCCTCTCCGGCCGACTGAGC
130 TGCGCATTATGCCTCTCCGGCCGACTCAAC
* ** *
20335955 GCTCGCGTGCTCGTTTCGTGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAGCA
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTATGCATAG-GGAGTTCATTCCATGTCTAAGCA
20336015 TACATGTTCA
Statistics
Matches: 178, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 95 0.53
159 77 0.43
160 4 0.02
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCACCAGA
CCAGAACGAAGGTTGCAGCAGCAGGATCGATAGCACGTAGGGGGGACCGGGCTGATCCCTAGCTT
GCGCATTATGCCTCTCCGGCCGACTCAAC
Found at i:20337751 original size:26 final size:26
Alignment explanation
Indices: 20337717--20337773 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
20337707 TGGGTTGGCT
*
20337717 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGAATACGGAGTTCATTCCCA-GTC
20337743 TAAGAATACGGAGTTCATTCCCAGTC
1 TAAGAATACGGAGTTCATTCCCAGTC
20337769 TAAGA
1 TAAGA
20337774 TTTTAAGCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
TAAGAATACGGAGTTCATTCCCAGTC
Found at i:20338444 original size:26 final size:26
Alignment explanation
Indices: 20338415--20338467 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20338405 GTTGACTTAG
*
20338415 GCATACGGAGATCATCCCCAGTCTAA
1 GCATACGAAGATCATCCCCAGTCTAA
* *
20338441 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGATCATCCCCAGTCTAA
20338467 G
1 G
20338468 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGATCATCCCCAGTCTAA
Found at i:20338751 original size:159 final size:159
Alignment explanation
Indices: 20338569--20338944 Score: 393
Period size: 158 Copynumber: 2.4 Consensus size: 159
20338559 CGGTTGAGCA
* * * *
20338569 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAT
* * * **
20338633 CGGACTGAGGGTTGTGGCAACGGGACCGGTAGCACGCAGAGGGGGA-TAGAGCC-GATCCCCGAC
66 CAGACTGAGGGTTGCGGCAACAGGACCGACAGCACGCAG-GGGGGACT-GAGCCAG-TCCCCGAC
20338696 TTGCGCATTATGCCTCTCCGGTCGGCTCAACG
128 TTGCGCATTATGCCTCTCCGGTCGGCTCAACG
* * * * * *
20338728 CTCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTAATTCCCA-GTCTAAG-ATCGGA
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* **** * * * * *
20338791 TCAGACTGTGGGTTGCGGTTGTAGGATCGACAGCATGCAGGGGGGACTGGGCCAGTCCCTGGCTT
65 TCAGACTGAGGGTTGCGGCAACAGGACCGACAGCACGCAGGGGGGACTGAGCCAGTCCCCGACTT
* * * * * *
20338856 GTGCATTCTGTCTCTCCGGTTGGCTGAGCG
130 GCGCATTATGCCTCTCCGGTCGGCTCAACG
*
20338886 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20338945 TATGGAGTTC
Statistics
Matches: 175, Mismatches: 36, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 92 0.53
159 77 0.44
160 3 0.02
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (159 bp):
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAT
CAGACTGAGGGTTGCGGCAACAGGACCGACAGCACGCAGGGGGGACTGAGCCAGTCCCCGACTTG
CGCATTATGCCTCTCCGGTCGGCTCAACG
Found at i:20338952 original size:26 final size:26
Alignment explanation
Indices: 20338916--20338968 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20338906 GTTGGCTTAG
*
20338916 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCAATCCTA-GTCTAA
*
20338942 GCATATGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
20338968 G
1 G
20338969 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:20339247 original size:353 final size:353
Alignment explanation
Indices: 20338663--20339490 Score: 984
Period size: 353 Copynumber: 2.3 Consensus size: 353
20338653 CGGGACCGGT
** * * * * * *
20338663 AGCACGCAGAGGGGGATAGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGG-TCGGCTCAAC
1 AGCACG-AGA-GGGGACCGAGCCGATCACCGGCTTGCACATTCTGCCTCTCCGGCT-GGCTGAGC
* * *
20338727 GCTCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCGGAT
63 GCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* ** * * * *
20338792 CAGACTGTGGGTTGCGGTTGTAGGATCGACAGCATGCAGGGGGGACTGGGCCAGTCCCTGGCTTG
128 CAGACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGACTGGGCCAGTCCCTGGCTTA
* * ** * ** *
20338857 TGCATTCTGTCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
193 CGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTCGCATGGGTTGGCTTAGGCATAC
* * *
20338922 GGAGTTCATTCCATGTCTAAGCATATGGAGTTCAATCCTAGTCTAAGATCGGACCGGACCGAGGG
258 AGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGACCGAGGG
*
20338987 TTGCGACAGCAAGACCAATAGCAGGATCGAC
323 TTGCGACAGCAAGACCAACAGCAGGATCGAC
* *
20339018 AGCAGGCAGAGGGGACCGAGCGGATCACCGGCTTGCACATTCT-CGCTCTCCGGCTGGCTGAGCG
1 AGCACG-AGAGGGGACCGAGCCGATCACCGGCTTGCACATTCTGC-CTCTCCGGCTGGCTGAGCG
* * *
20339082 CTCGCACGTTCATTTCGTGGGATGACTTAGTCAT-CGGAGTTCATTCCCAGTCTAAGATCAGATC
64 CTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
* * * *
20339146 GGACTGAGGGTTGCTGCAGCAGGATCAACAGCACGCCGGGGGGA-TGAGGCCAGT-CCTCGTCTT
129 AGACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGACTG-GGCCAGTCCCT-GGCTT
* * *
20339209 ACGCATTCTGCCTCTTCGGCCGACTGAGTGCTCGCACGCTCGTCGCATGGGTTGGCTTAGGCATA
192 ACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTCGCATGGGTTGGCTTAGGCATA
* * *
20339274 CAGAGTTTATTCCATGTCTAAGCATACGGTGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGG
257 CAGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGACCGAGG
* * * *
20339339 GTTGCGACAGCAGGACTAGCAGTAGGATCGAC
322 GTTGCGACAGCAAGACCAACAGCAGGATCGAC
* * * * * * * ** *
20339371 AGCACGTGGGGGGACTGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCTGGCTGGCTGAGTACC
1 AGCACGAGAGGGGACCGAGCCGATCACCGGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGCGCT
* * *
20339436 CACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
66 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
20339491 CCCCAGCCGG
Statistics
Matches: 399, Mismatches: 67, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
352 80 0.20
353 238 0.60
354 71 0.18
355 10 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (353 bp):
AGCACGAGAGGGGACCGAGCCGATCACCGGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGCGCT
CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAG
ACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGACTGGGCCAGTCCCTGGCTTACGC
ATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTCGCATGGGTTGGCTTAGGCATACAGA
GTTCATTCCATGTCTAAGCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGACCGAGGGTTG
CGACAGCAAGACCAACAGCAGGATCGAC
Found at i:20340622 original size:26 final size:26
Alignment explanation
Indices: 20340592--20340644 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20340582 GTTGGCTTAG
*
20340592 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20340618 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20340644 G
1 G
20340645 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20341343 original size:26 final size:26
Alignment explanation
Indices: 20341313--20341365 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20341303 GTTGGCTTAT
20341313 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
20341339 GCATAGGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20341365 G
1 G
20341366 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20341715 original size:26 final size:26
Alignment explanation
Indices: 20341668--20341719 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20341658 TTGACTTAAT
*
20341668 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCAAGTCTAAG
*
20341694 CATACGGAGTGT-ATTCCAAGTCTAAG
1 CATACGGAGT-TCATCCCAAGTCTAAG
20341720 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCAAGTCTAAG
Found at i:20341887 original size:25 final size:25
Alignment explanation
Indices: 20341853--20341904 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
20341843 TGGTTTAGGT
20341853 ATACGAAGTTCATT-CCATGTCTAAG
1 ATACGAAGTTCATTCCCA-GTCTAAG
*
20341878 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
20341903 AT
1 AT
20341905 TTTGAGCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 22 0.88
26 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
ATACGAAGTTCATTCCCAGTCTAAG
Found at i:20342989 original size:158 final size:158
Alignment explanation
Indices: 20342543--20343036 Score: 444
Period size: 158 Copynumber: 3.1 Consensus size: 158
20342533 CTAAGAATAT
* * * * *
20342543 GGAGTTCATTCCCA-ATCTAAGATCGGATCGGATCGAGGGTTACGGTAGCAGGATCGAAAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGAAGCACG
* * * * * * * * *
20342607 TA-AGGGGACCGAGCCTATCCCCGGCTTACGTATTCTGCCTCTTCGATTGGCTGA-CGGCCCACA
65 CAGGGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGC-GCCCACA
* *
20342670 CGCCCATTTCGTGGGTTGGCTTAGGCATAG
129 CGCTCATTTCGTGGGTTGGCTTAGGCATAC
* * ** * * ** * * *
20342700 GGAATTTATTCCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCGGGA-CTGGCAGCAC
1 GGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTACGGTAGCAGGATC-GGAAGCAC
* * * * * * * **
20342763 GCAGAGGCGGATCGGGCTGATCCACGGCTTGCACATTATGCCTCTCC-ATCGGCTCAGCACCCGT
64 GCAG-GGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCAC
*
20342827 ACGCTCATTTCGTGGGTTGACTTAGGCATAC
128 ACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* *
20342858 GGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCATGATCGGTAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGAAGCACG
* * * * **
20342922 CAGGGGGGACCGAGTCGATCCTCGGCTTGTGCATTATGGCTCTCCGATCGATTGAGCGCCCACAC
65 CAGGGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCACAC
* * *
20342987 GCTCATTTCGTGCGCTGGCTTAGGCATAT
130 GCTCATTTCGTGGGTTGGCTTAGGCATAC
*
20343016 AGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
20343037 CATACGGAGT
Statistics
Matches: 257, Mismatches: 69, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
156 4 0.02
157 79 0.31
158 139 0.54
159 35 0.14
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGAAGCACGC
AGGGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCACACG
CTCATTTCGTGGGTTGGCTTAGGCATAC
Found at i:20343981 original size:331 final size:334
Alignment explanation
Indices: 20343102--20344104 Score: 887
Period size: 331 Copynumber: 2.9 Consensus size: 334
20343092 GGACCAGCAG
* * * *** * *
20343102 CAGGATCGGTAGCACGCAGGAGGGGATCGGGCCT-ATCCCTGGCTTGCGCAATCTACCTCTCCAG
1 CAGGATCGATAGCACGCAGG-GGGGACCAGG-CTGATCCCCAACTTGCGCATTCTGCCTCTCC-G
* * * * * * * *
20343166 CCA-ACTGAGCGCCCGCACGCTCATTTCATGGGTTGGATTAGGAATACGGAGTTCATTCCATGTC
63 ACAGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTC
* * * * *
20343230 TAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGACAGTGGGATCGATAGCATGCAGAGA
128 TAAGCCCCAGCCAGACCGAGGG-T-T-GT-----G---G-CAGTGGGATCGACAGCACGAAG-GA
* * * * * * *
20343295 GGGA-TAGGGCTGATCCCCGGCTGGCGAATTATGCCTCTTCGGTCGGCTGAGCGCCTGCACGCTC
180 GGGACCA-GGCCGATCCCCGCCTTGCGCATTCTGCCTC-TC---C-GC--AGCGCCAGCACGCTC
* * * *
20343359 GTTTCGTGGGTTGACTTAGACAGACGGAGTTCATCCTCAGTCTAAGCATACGGAGTTCATTCCCA
237 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCT-AGTCTAAGCATACAGAGTTCATTCCCA
* *** * * *
20343424 GTCTAAGATCGGATTGGACCGAGGGTTGTGGCAG
301 GTCTAAGATCGAACCAGACCGAGAGTTGCGGCAA
* * * * *
20343458 CAGGATCGGTAGCACGTAGGGGGGACCAGGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGACC
1 CAGGATCGATAGCACGCAGGGGGGACCAGGCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACA
* * *
20343523 GACTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGGTTAGGCATAGGGAGTTGATTCCACGTCTAA
66 GACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAA
* * * *
20343588 GCCCCAGCCAGTCCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGGAGGGATCGGGCCGATCC
131 GCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGAAGGAGGGACCAGGCCGATCC
* *
20343653 CCGCCTTGCGCATTCTGCCTCT-C-C-G-GCCAGTACGTTCGTTTCATGGGTTGACTTAGGCATA
196 CCGCCTTGCGCATTCTGCCTCTCCGCAGCGCCAGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * * *
20343714 CGGAGTTCATCCCTAATCTAAGCATATAGAGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGA
261 CGGAGTTCAT-CCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGA
20343779 GTTGCGGCAA
325 GTTGCGGCAA
* * * * *
20343789 TAGGATCGATAGCACGCA-GGGGGATC-GGGTCGATCCCCAACTTGTGCATTTTGCCTCTCCGAC
1 CAGGATCGATAGCACGCAGGGGGGACCAGGCT-GATCCCCAACTTGCGCATTCTGCCTCTCCGAC
* * *
20343852 AGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
65 AGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTA
** * * * ** *
20343917 AGCCCCATTCGGACTGAGGGTTGTGGTAGTGGGATCGGTAGCATGAA-GATGGGGACCAGGCCGA
130 AGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGAAGGA--GGGACCAGGCCGA
* * *
20343981 TCCCCGGCTTGCGCATTCTGCCTCTCCAGCCTGCTGAGCGCCCGCACGCTCATTTCATGGGTT-A
193 TCCCCGCCTTGCGCATTCTGCCTCT----CC-GC--AGCGCCAGCACGCTCGTTTCATGGGTTGA
20344045 GCTTAGGCATACGGAGTTCATTCC-ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
251 -CTTAGGCATACGGAGTTCA-TCCTA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
20344105 GTTTGGAACA
Statistics
Matches: 542, Mismatches: 84, Indels: 56
0.79 0.12 0.08
Matches are distributed among these distances:
329 5 0.01
330 130 0.24
331 139 0.26
332 4 0.01
335 1 0.00
336 1 0.00
337 1 0.00
338 1 0.00
341 4 0.01
342 104 0.19
343 21 0.04
344 1 0.00
347 1 0.00
352 2 0.00
353 1 0.00
354 5 0.01
355 102 0.19
356 19 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (334 bp):
CAGGATCGATAGCACGCAGGGGGGACCAGGCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACA
GACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAA
GCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGAAGGAGGGACCAGGCCGATCC
CCGCCTTGCGCATTCTGCCTCTCCGCAGCGCCAGCACGCTCGTTTCATGGGTTGACTTAGGCATA
CGGAGTTCATCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGAG
TTGCGGCAA
Found at i:20344081 original size:26 final size:26
Alignment explanation
Indices: 20344051--20344103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20344041 GTTAGCTTAG
*
20344051 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20344077 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20344103 G
1 G
20344104 AGTTTGGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20344799 original size:26 final size:26
Alignment explanation
Indices: 20344763--20344815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20344753 GTTGACTTAG
*
20344763 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
20344789 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20344815 G
1 G
20344816 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20345263 original size:158 final size:165
Alignment explanation
Indices: 20345083--20345460 Score: 437
Period size: 170 Copynumber: 2.3 Consensus size: 165
20345073 GCGCCTGAAT
**
20345083 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTTGACTGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGA
*
20345148 GGG-T-T-CCA-G-CA-A-CAGAATCGACAGCACACAGGGGGGACCGGGCCGGTCCCCGACATGC
66 GGGTTGTACCAGGACACAGCAGAATCGACAGCACACAGGGGGGACCGGGCCGATCCCCGACATGC
* *
20345206 GCATTCTGCCTCTCCAACCGGCTGAGTGCCCACAC
131 GCATTCTACCTCTCCAACCGGCTGAGGGCCCACAC
* * *
20345241 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGA
* * * ** ** *
20345306 GGGTTATGGTAGCAGGACCACGAGCAGGATCGGCAGCATGCAGGGGGGATTGGGCCGATCCCCGG
66 GGG-T-T-GTACCAGGA-CAC-AGCAGAATCGACAGCACACAGGGGGGACCGGGCCGATCCCCGA
* **** **
20345371 CTTGCGCATTCTACCTCTCCGGTTGGCTGAGGGCCCGTAC
126 CATGCGCATTCTACCTCTCCAACCGGCTGAGGGCCCACAC
* *
20345411 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20345461 CATAAAGAGT
Statistics
Matches: 181, Mismatches: 27, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
158 63 0.35
161 1 0.01
163 1 0.01
164 2 0.01
165 1 0.01
167 2 0.01
169 1 0.01
170 110 0.61
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (165 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGA
GGGTTGTACCAGGACACAGCAGAATCGACAGCACACAGGGGGGACCGGGCCGATCCCCGACATGC
GCATTCTACCTCTCCAACCGGCTGAGGGCCCACAC
Found at i:20345649 original size:26 final size:26
Alignment explanation
Indices: 20345619--20345671 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20345609 GTTGGCTTAG
**
20345619 GCATAAGGACTTCATTCCTTGTCTAA
1 GCATAAGGACTTCATTCCCAGTCTAA
* *
20345645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGACTTCATTCCCAGTCTAA
20345671 G
1 G
20345672 AGTTTGAGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGGACTTCATTCCCAGTCTAA
Found at i:20346929 original size:26 final size:26
Alignment explanation
Indices: 20346899--20346951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20346889 GTTGACTTAG
*
20346899 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
20346925 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
20346951 G
1 G
20346952 ATTGAAACGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:20347287 original size:159 final size:157
Alignment explanation
Indices: 20346925--20347291 Score: 382
Period size: 159 Copynumber: 2.3 Consensus size: 157
20346915 CCTAGTCTAA
* * * * * * *
20346925 GCATACTGAGTTCATTCCCAGTCTAAGATTGAAACGGATCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATAG-ATCGGACCGAGGGTTGCGACAGCAGGACCGACA
* * * * * * *
20346990 GCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGCTGATTGAGCACC
65 GCACGCAGGGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTCTCGAGCTGACTCAGCACC
* *
20347055 CGCACGCCCATTTTGTGGGTTGGCTTAG
130 CGCACGCCCATTTCGTGGGTTGACTTAG
* * * * *
20347083 GCATTA-AGAGTTCATT-CCATGTCTAAGCCATAG-TCAGACCAAGGGTTGTGATAGCGGGACCG
1 GCA-TACAGAGTTCATTCCCA-GTCTAAG--ATAGATCGGACCGAGGGTTGCGACAGCAGGACCG
* * *
20347145 ACAGCACGCAGAGGGGGATCGGACCGATCCCCGACTTTCGCATTATGCCTCTCCGA-CTGGCTCA
62 ACAGCACGCAG-GGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTCT-CGAGCTGACTCA
* * *
20347209 TCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
125 GCACCCGCACGCCCATTTCGTGGGTTGACTTAG
*
20347242 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
1 GCATACAGAGTTCATTCCCAGTCTAAGAT-AGATCGGACCGAGGGTTGCG
20347292 GTAGTAGGAT
Statistics
Matches: 168, Mismatches: 31, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
157 5 0.03
158 52 0.31
159 103 0.61
160 8 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATAGATCGGACCGAGGGTTGCGACAGCAGGACCGACAG
CACGCAGGGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTCTCGAGCTGACTCAGCACCC
GCACGCCCATTTCGTGGGTTGACTTAG
Found at i:20348235 original size:26 final size:26
Alignment explanation
Indices: 20348206--20348258 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20348196 GTTGGCTTAG
20348206 GCATACAGAGTTCATTCCACA-TCTAA
1 GCATACAGAGTTCATTCC-CATTCTAA
* *
20348232 GCATCCGGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCATTCTAA
20348258 G
1 G
20348259 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCATTCTAA
Found at i:20349412 original size:26 final size:26
Alignment explanation
Indices: 20349383--20349435 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20349373 GTTGACTTAG
20349383 GCATAC-AGAGTTCATCCCCAGTGTAA
1 GCATACGA-AGTTCATCCCCAGTGTAA
* *
20349409 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTGTAA
20349435 G
1 G
20349436 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTGTAA
Found at i:20349935 original size:26 final size:26
Alignment explanation
Indices: 20349881--20349936 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
20349871 CGGGTTGGCT
* *
20349881 TAAGCATATGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGAC
20349907 TAAGCATACGGAGTTCATTCCCA-GAC
1 TAAGCATACGGAGTTCATT-CCATGAC
20349933 TAAG
1 TAAG
20349937 ATTGGACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGAC
Found at i:20351861 original size:157 final size:154
Alignment explanation
Indices: 20351359--20351863 Score: 424
Period size: 159 Copynumber: 3.2 Consensus size: 154
20351349 CATCCCCAAT
* * * *
20351359 CTAA-GCATACAGAGTTCATTCTGAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGAT
1 CTAAGGCATACGGAGTTCATTC-CAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
20351423 CGGCAGCACACAGGAGGGACTGGGCCGATCCCCGACTTGTGCATTCTACCTTTCCGACCGGCTGA
64 CGACAGCACGCAGG-GGGAC-GGGCCGATCCCCGACTTGTGCATTATGCCTCTCAGATCGGATGA
* * *
20351488 GCACCCGTACGCCCGTTTCATGGGTTGG
127 GCACCTGCACGCTCGTTTCATGGGTTGG
* * ** * * **
20351516 CCT-AGGCATAGGGAGTTCTTTCCATGTCTAAGCCCCAG-CGAGATCGAGGGTTGTGGCAGTGGG
1 -CTAAGGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACG-GACCGAGGGTTGCGGCAGCAGG
* * ** * * *
20351579 ACCGACAGCAAGCAGAGGGGGACCAAGCTGATCCCCGGCTTGTGCATTATGCCTCTCTGATCGGC
62 ATCGACAGCACGC--AGGGGGA-CGGGCCGATCCCCGACTTGTGCATTATGCCTCTCAGATCGG-
* *
20351644 AT-AGCGCCTGCACGCTCGTTTCATGGGTTGA
123 ATGAGCACCTGCACGCTCGTTTCATGGGTTGG
* * *
20351675 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGAT
1 CTAAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGCAGCAGGAT
* ** * * * *
20351740 CGACAGCACGCAGGGGGATCGGGCCGATCCTCGACTTACGTATTTTGCCTCTCAGGTCGGTTGAG
64 CGACAGCACGCAGGGGGA-CGGGCCGATCCCCGACTTGTGCATTATGCCTCTCAGATCGGATGAG
* **
20351805 CACCTGCACGTTCGTTTTGTGGGTTGG
128 CACCTGCACGCTCGTTTCATGGGTTGG
*
20351832 CTAAGGCATACGGAGTTCATTCTATGTCTAAG
1 CTAAGGCATACGGAGTTCATTCCA-GTCTAAG
20351864 CATACGGAGT
Statistics
Matches: 270, Mismatches: 63, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 91 0.34
158 54 0.20
159 112 0.41
160 10 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
CTAAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACGGACCGAGGGTTGCGGCAGCAGGATCG
ACAGCACGCAGGGGGACGGGCCGATCCCCGACTTGTGCATTATGCCTCTCAGATCGGATGAGCAC
CTGCACGCTCGTTTCATGGGTTGG
Found at i:20351886 original size:26 final size:26
Alignment explanation
Indices: 20351832--20351889 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
20351822 TGTGGGTTGG
*
20351832 CTAAGGCATACGGAGTTCATTCTATGT
1 CTAA-GCATACGGAGTTCATTCCATGT
20351859 CTAAGCATACGGAGTTCATTCCCA-GT
1 CTAAGCATACGGAGTTCATT-CCATGT
20351885 CTAAG
1 CTAAG
20351890 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCATGT
Found at i:20352642 original size:159 final size:158
Alignment explanation
Indices: 20352233--20352720 Score: 480
Period size: 159 Copynumber: 3.1 Consensus size: 158
20352223 CTAAGCATGT
** ** * * *
20352233 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAGCAAGATCGGTAGCACAC
1 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACGC
* * * * * * *
20352298 AGGGGGGACAAGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGTACG
66 AGAGGGGACCAGGCCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCCTGAAC-
*
20352363 GCT-GTTTCGTGGGTTGGCTTAGGCATAG
130 GCTCGTTTCGTGGGTTGGCTTAGGCATAA
** * * *
20352391 GGAGTTCATT-CCATGTCTAAGCCCCA-ACTGGACTGAGGGTTGTGGCAGCAGGACCTACAGCAC
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGATAGCAC
* * * * * * * * *
20352454 GCTGAAGGGAATC-GAACCGATCCCCAGCTTATGCATTATGCCTCTCCGACCGACTCAGTGCCTG
64 GCAG-AGGGGACCAG-GCCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCCTG
* * * * *
20352518 AACGCTCATTTTGTTGGTTGACTTAGGCATAC
127 AACGCTCGTTTCGTGGGTTGGCTTAGGCATAA
** ** *
20352550 GGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGTTGTGGTAGCAGGATCGATAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACGC
* * * * * *
20352615 AGAGGTGGACCAGGCCGGTCCCTAGCTTGTGCGTTCTACCTCTCCGACCGGCAAAGCGCCTGCAC
66 AGAGG-GGACCAGGCCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCCTGAAC
*
20352680 GCTCGTTTCATGGGTTGGCTTAGGCATAA
130 GCTCGTTTCGTGGGTTGGCTTAGGCATAA
20352709 GGAGTTCATTCC
1 GGAGTTCATTCC
20352721 ATGACTAAGC
Statistics
Matches: 258, Mismatches: 63, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 54 0.21
159 197 0.76
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACGC
AGAGGGGACCAGGCCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCCTGAACG
CTCGTTTCGTGGGTTGGCTTAGGCATAA
Found at i:20353092 original size:26 final size:26
Alignment explanation
Indices: 20353062--20353114 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20353052 GTTGACTTTG
*
20353062 GCATAC-GAAGTTC-ATCCTCAGTTTAA
1 GCATACAG-AGTTCAATCCT-AGTCTAA
20353088 GCATACAGAGTTCAATCCTAGTCTAA
1 GCATACAGAGTTCAATCCTAGTCTAA
20353114 G
1 G
20353115 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCTAGTCTAA
Found at i:20354445 original size:158 final size:157
Alignment explanation
Indices: 20354029--20354445 Score: 430
Period size: 159 Copynumber: 2.6 Consensus size: 157
20354019 ACCACCCATT
* * * * *
20354029 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCGCGTTTCATTGGT
1 CGATCCCTGACTTGCGCATTCTGCCTCTCCGTC-GGCTAAGCGCCCGCACGCTCGTTTCATGGGT
* * * * ** * * * * *
20354094 TGGCTTAGGCATAGGGAGTTAATTCGATGTCTAATCCCCAGCTGGACCGAGGGTTGTGGTAGCGG
65 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAA-GACCAGCCGGACCAAGGGGTGTGGCAGCAG
*
20354159 GATCGACAGCACGCAGTAGGGGATCGGGC
129 GATCGACAGCACGCAGTAGGGGACCGGGC
* * *
20354188 CGATCCC-CAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAA-CGCCCGCACGCTCATTTCATGG
1 CGATCCCTGA-CTTGCGCATTCTGCCTCTCC-GTCGGCT-AAGCGCCCGCACGCTCGTTTCATGG
* **
20354251 GTTGACTTAGGCATAC-AGAGTTCATTCCCA-GTCTAAGATTAGACCGGACCAAGGGGTGTGGCA
63 GTTGGCTTAGGCATACGA-AGTTCATT-CCATGTCTAAGACCAG-CCGGACCAAGGGGTGTGGCA
* * *
20354314 GCAGGATCGATAGCACGCAG-GGGGGACCGGGT
125 GCAGGATCGACAGCACGCAGTAGGGGACCGGGC
* * * * *
20354346 CGGTCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTAAGTGCCCGTACGTTCGTTTCGTGGGT
1 CGATCCCTGACTTGCGCATTCTGCCTCTCCG-TCGGCTAAGCGCCCGCACGCTCGTTTCATGGGT
*
20354411 TGGCTTAGGCATACGAAGTTCATTCCATGCCTAAG
65 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
20354446 CATACGGGCT
Statistics
Matches: 211, Mismatches: 36, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
157 6 0.03
158 88 0.42
159 112 0.53
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
CGATCCCTGACTTGCGCATTCTGCCTCTCCGTCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT
GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGACCAGCCGGACCAAGGGGTGTGGCAGCAGGA
TCGACAGCACGCAGTAGGGGACCGGGC
Found at i:20354773 original size:210 final size:210
Alignment explanation
Indices: 20354389--20354780 Score: 493
Period size: 210 Copynumber: 1.9 Consensus size: 210
20354379 CGGCTAAGTG
* * * *
20354389 CCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGCCTAAGCATACGGG
1 CCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGCCTAAGCATAAGAG
* * * *** *
20354454 CTTCATTCCCAGTGTAAGATAAGACCGGACTAAGGGTTGCGGGAGCAGGACCAGTAGCAGGATCA
66 CTTCATTCCCAGTCTAAGATAAGACCAGACGAAGGGTTGCAACAGCAGGACCAGCAGCAGGATCA
* ** * *
20354519 GCAGCACGTAGGGAGGGACCGGGCTGATCCTTGGCTTGCGCATTCTACCTCTTCAGCCAGCTTCT
131 GCAGCACGTAGGGAGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTTCAGCCAGCTTCT
20354584 CTAACCGGTTGATTA
196 CTAACCGGTTGATTA
* * * *
20354599 CCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCTTGTCTAAGCATATAGA
1 CCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGCCTAAGCATA-AGA
* * * *
20354664 G-TTCATTCCCAGTCTAAGATCATACTAGACCGAA-GGTTGCAACAGCAGGACCAGCAGTAGGAT
65 GCTTCATTCCCAGTCTAAGATAAGACCAGA-CGAAGGGTTGCAACAGCAGGACCAGCAGCAGGAT
* * *
20354727 C-GACAGCATGTAGGGAGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCT
129 CAG-CAGCACGTAGGGAGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCT
20354781 CCAACCGATT
Statistics
Matches: 152, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
209 1 0.01
210 146 0.96
211 5 0.03
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (210 bp):
CCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGCCTAAGCATAAGAG
CTTCATTCCCAGTCTAAGATAAGACCAGACGAAGGGTTGCAACAGCAGGACCAGCAGCAGGATCA
GCAGCACGTAGGGAGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTTCAGCCAGCTTCT
CTAACCGGTTGATTA
Found at i:20354855 original size:26 final size:26
Alignment explanation
Indices: 20354826--20354878 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20354816 GTTGACTTAG
20354826 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
20354852 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
20354878 G
1 G
20354879 ATCAAGTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:20355140 original size:159 final size:157
Alignment explanation
Indices: 20354888--20355195 Score: 426
Period size: 159 Copynumber: 1.9 Consensus size: 157
20354878 GATCAAGTTG
* * *
20354888 GATCGAGGGTTGCGGTAGTAGGATCGGCAGCACGTAGGGGGGACCAGGCCGATCCTCGGCCTATG
1 GATCGAGGGTTGCGGTAGGAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCCTATG
* *
20354953 CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGG
*
20355018 AGTTCATTCCATGTGTAAGCCCCAGCCC
131 AGTTCATT-CATGTCTAAGCCCCAGCCC
* *
20355046 GATCGAGGGTTGTGGTAGCGA-GA-CTGGCAGCACGCAGAGGGGGACCAGGTCGATCCCCGG-CT
1 GATCGAGGGTTGCGGTAG-GAGGATC-GGCAGCACGCAG-GGGGGACCAGGCCGATCCCCGGCCT
* * * *
20355108 -TGCACATTCTGCCTCTCCGACCGGCTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCA
63 ATG--CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCA
20355172 TACGGAGTTCATTCATGTCTAAGC
126 TACGGAGTTCATTCATGTCTAAGC
20355196 ATAGAGAGTT
Statistics
Matches: 133, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
157 3 0.02
158 42 0.32
159 88 0.66
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (157 bp):
GATCGAGGGTTGCGGTAGGAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCCTATG
CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGG
AGTTCATTCATGTCTAAGCCCCAGCCC
Found at i:20356269 original size:159 final size:159
Alignment explanation
Indices: 20356099--20356397 Score: 348
Period size: 159 Copynumber: 1.9 Consensus size: 159
20356089 GCCCCAGTCG
* * * * * * *
20356099 GACCGAAAGTTGTGGCAGCGGGACAGGCAGCACGTAGAGGGGGATCGGGTCGATCC-CTGGCTTA
1 GACCGAAAGTTGCGACAGCAGGACAGACAGCACGCAGAGGGGGATCGGATCGATCCTC-GACTTA
* *
20356163 CGCATTATGCCTCTCCGATCGACTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAC
65 CGCATTATGCCTCTCCGATCGACTCAACGCCCGAACGCTCGTTTCCTGGGTTGACTTAGGCATAC
20356228 AAAGTTCATTCTTGGTCTAAGATTGGACCA
130 AAAGTTCATTCTTGGTCTAAGATTGGACCA
* * ** * *
20356258 GACCGAGAGTTGCGATAGCAGGATTGACAGCACGCAGGGGGGGATCGGATCGATCCTCGACTTAT
1 GACCGAAAGTTGCGACAGCAGGACAGACAGCACGCAGAGGGGGATCGGATCGATCCTCGACTTAC
* * * * * * * * * *
20356323 GCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGTACGCTCTTTTCCTGGGTTGGCTTAGGCATACG
66 GCATTATGCCTCTCCGATCGACTCAACGCCCGAACGCTCGTTTCCTGGGTTGACTTAGGCATACA
*
20356388 GAGTTCATTC
131 AAGTTCATTC
20356398 CATGTATATG
Statistics
Matches: 113, Mismatches: 26, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
159 112 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
GACCGAAAGTTGCGACAGCAGGACAGACAGCACGCAGAGGGGGATCGGATCGATCCTCGACTTAC
GCATTATGCCTCTCCGATCGACTCAACGCCCGAACGCTCGTTTCCTGGGTTGACTTAGGCATACA
AAGTTCATTCTTGGTCTAAGATTGGACCA
Found at i:20356568 original size:185 final size:184
Alignment explanation
Indices: 20356243--20356630 Score: 474
Period size: 185 Copynumber: 2.1 Consensus size: 184
20356233 TCATTCTTGG
* * * *
20356243 TCTAAGATTGGACCAGACCGAGAGTTGCGATAGCAGGATTGACAGCACGCAGGGGGGGATCGGAT
1 TCTAAGATTGGACCAGACCGAGAGTTACGACAGCAGGATCGACAGCACGCAGGGGGGGACCGGAT
* * * ** * * *
20356308 CGATCCTCGACTTATGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGTACGCTCTTTTCCTGGGT
66 CGATCCCCGACTTACGAATTCTGCCTCTTCGACCAGCTGAGCGCCCGTACGCTCTTTTCATAGGT
* * * * *
20356373 TGGCTTAGGCATACGGAGTTCATTCCATGTATATGCATATGGAGTTAATTCCCAA
131 TCGCTTAGGCATACAGAGTTCATTCAATGTATAAGCATACGGAGTT-ATTCCCAA
* * * *
20356428 TCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGTGGACCTGG-
1 TCTAAGATTGGACCAGACCGAGAGTTACGACAGCAGGATCGACAGCACGCAGGGGGGGACC-GGA
* * *
20356492 TCGGTCCCCGGCTTGCGAATTCTGCCTCTTCGACCAGCTGAGCGCCCGTACGCT-TGTTTCATAG
65 TCGATCCCCGACTTACGAATTCTGCCTCTTCGACCAGCTGAGCGCCCGTACGCTCT-TTTCATAG
* * * *
20356556 GTTCGTTTAGGCATACAGAGTTCATTCAATGTCTAAGCATACGGAGTTTTTCCCAG
129 GTTCGCTTAGGCATACAGAGTTCATTCAATGTATAAGCATACGGAGTTATTCCCAA
*
20356612 TCTAAGATTGGACCGGACC
1 TCTAAGATTGGACCAGACC
20356631 AAGGGTTGCG
Statistics
Matches: 170, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
184 23 0.14
185 145 0.85
186 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (184 bp):
TCTAAGATTGGACCAGACCGAGAGTTACGACAGCAGGATCGACAGCACGCAGGGGGGGACCGGAT
CGATCCCCGACTTACGAATTCTGCCTCTTCGACCAGCTGAGCGCCCGTACGCTCTTTTCATAGGT
TCGCTTAGGCATACAGAGTTCATTCAATGTATAAGCATACGGAGTTATTCCCAA
Found at i:20356975 original size:26 final size:26
Alignment explanation
Indices: 20356945--20357023 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
20356935 GTTGACTTAG
20356945 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20356971 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20356997 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
20357023 G
1 G
20357024 ATCAGATCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20358287 original size:26 final size:26
Alignment explanation
Indices: 20358250--20358302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20358240 GTTGACTTAG
20358250 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20358276 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20358302 G
1 G
20358303 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20359010 original size:26 final size:26
Alignment explanation
Indices: 20358981--20359033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20358971 GTTGACTTAG
20358981 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20359007 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20359033 G
1 G
20359034 ATCGACCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20359589 original size:159 final size:158
Alignment explanation
Indices: 20359007--20359998 Score: 748
Period size: 159 Copynumber: 6.2 Consensus size: 158
20358997 CCCAGTCTAA
* * *
20359007 GCATATGGAGTTCATTCCCAGTCTAAGATC-GACCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA-CCGCA
* * * *
20359071 GCACGCAG-GAGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGCTCGGCTGAGCGC
* *
20359135 CCGCACAC-CTGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * * * ** * * * *
20359164 GCATAGGGAGTTCATT-TCATGTCTAAG-CCCGAGCTGGACCGAGGGTTGTGGCAACGGGACTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-CCAGACCGAGGGTTGCGGCAGCAGGAC-CG
* ** * * * * * * * *
20359227 TAGCACGCAGAGGGGGATCGGGTTGATCCGCGGCTTGCGTATTATACCTTTTCGGC-CAGCTCAG
63 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCC-TCTCTGCTCGGCTGAG
* * * * *
20359291 TGCCCGTACGCTTGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * * *
20359323 GCATACGAAGTTCATTCCCAGTCTAATATCTGACCAGACCAAGGATTCCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCG-CA
* * * * * * * * *
20359388 GCTCGCATAGGGGGA-CTGGGTCGGTCCCCAGCTTACGTATTCTGCCTCTCTGACT-AGCTGAAC
65 GCACGCAGAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTG-CTCGGCTGAGC
* *
20359451 ACCTGCACGCTCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
20359482 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCCGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACC-GCA
* * *
20359547 GCACGCAGAGGGGGA-CTAGGCCGATCCCTGGCTTGCGCATTCTGCCTGTTCGATAAGCCTCTCT
65 GCACGCAGAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCT-CTC--T--G---CTC-
** * * * * *
20359611 GGCCGACTGAGCATCCGTATGCTCATTTCATGGGTTGACTTAA
120 -G--G-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
20359654 GCATACGAAGTTCATTCCTAGTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGCAGGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCG-CA
* * * * * *
20359719 GCACACAGA-GGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCT-TTTCGATCGGCTGAGTG
65 GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GCTCGGCTGAGCG
* * * *
20359782 CCCGTAAGCCCGTTTCATGGGTTGGCATAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * * *
20359812 GCATAGGGAGTTCATT-CCATGTCTAAGCCCAAACCGGACAGAGGGTTGTGGCAGCAAGACCAAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACC-GC
* * * * * *
20359876 AGCACGCAGAGGGGGACCGTGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGAG
64 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGCTCGGCTGAGCG
* *
20359941 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
20359971 GCATACGGAGTTTATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
20359999 GTTTGAGCCA
Statistics
Matches: 653, Mismatches: 148, Indels: 66
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.00
157 27 0.04
158 122 0.19
159 346 0.53
160 16 0.02
161 1 0.00
162 1 0.00
163 2 0.00
164 1 0.00
166 3 0.00
167 1 0.00
169 1 0.00
171 35 0.05
172 94 0.14
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGCAG
CACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGCTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:20359730 original size:172 final size:171
Alignment explanation
Indices: 20359459--20359771 Score: 459
Period size: 172 Copynumber: 1.8 Consensus size: 171
20359449 ACACCTGCAC
* * * * **
20359459 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
1 GCTCATTTCATGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGA
* *
20359524 GGGTTGCCGCAGCAGGACCAGCAGCACGCAGAGGGGGA-CTAGGCCGATCCCTGGCTTGCGCATT
66 GGGTTGCCGCAGCAGGACCAGCAGCACACAGA-GGGGATC-AGGCCGATCCCTGGCTTACGCATT
20359588 CTGCCTGTTCGATAAGCCTCTCTGGCCGACTGAGCATCCGTAT
129 CTGCCTGTTCGATAAGCCTCTCTGGCCGACTGAGCATCCGTAT
* *
20359631 GCTCATTTCATGGGTTGACTTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAAACCAGATCGA
1 GCTCATTTCATGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGA
* * *
20359696 GGGTTGCGGTAGCAGGACC-GACAGCACACAGAGGGGATCGGGCCGATCCCTGGCTTACGCATTC
66 GGGTTGCCGCAGCAGGACCAG-CAGCACACAGAGGGGATCAGGCCGATCCCTGGCTTACGCATTC
*
20359760 TGCCTTTTCGAT
130 TGCCTGTTCGAT
20359772 CGGCTGAGTG
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
171 40 0.32
172 85 0.68
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (171 bp):
GCTCATTTCATGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGA
GGGTTGCCGCAGCAGGACCAGCAGCACACAGAGGGGATCAGGCCGATCCCTGGCTTACGCATTCT
GCCTGTTCGATAAGCCTCTCTGGCCGACTGAGCATCCGTAT
Found at i:20359825 original size:330 final size:314
Alignment explanation
Indices: 20359004--20359998 Score: 908
Period size: 330 Copynumber: 3.1 Consensus size: 314
20358994 ATCCCCAGTC
* * * *
20359004 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGACCAGATCGAGGGTTGCGGCAGCAGGATCGG
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGACCAGATCGAGGGTTGCGGTAGCAGGATCGA
* * * * *
20359069 CAGCACGCAG-GAGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
66 CAGCACGCAGAG-GGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTTTTCGATCGGCTGAGC
* * * *
20359133 GCCCGCACA-CCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCGAG
130 GCCCGCA-AGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAGA-
* * * ** * * **
20359197 CTGGACCGAGGGTTGTGGCAACGGGACTGGTAGCACGCAGAGGGGGA-TCGGGTTGATCCGCGGC
193 CCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGACT-AGGCCGATCC-CGGC
* * * * * ** *
20359261 TTGCGTATTATACCTTTTCGGCCAGCTCAGTGCCCGTACGCTTGTTTCGTGGGTTGACT
256 TTGCGCATTCTGCCTGTTCGGCCAGCTCAGAGCCCGTACGCTCATTTCATGGGTTGACT
* * * * * *
20359320 TAGGCATACGAAGTTCATTCCCAGTCTAATATCTGACCAGACCAAGGATTCCGGTAGCAGGATCG
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATC-GACCAGATCGAGGGTTGCGGTAGCAGGATCG
* * * * * * * * *
20359385 ATAGCTCGCATAGGGGGA-CTGGGTCGGTCCCCAGCTTACGTATTCTGCC-TCTCTGA-CTAGCT
65 ACAGCACGCAGA-GGGGATC-GGGCCGATCCCCGGCTTACGCATTCTGCCTTTTC-GATC-GGCT
* * * * * * *
20359447 GAACACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAT
126 GAGCGCCCGCAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-C
* * **
20359511 CGGACCAGACCGAGGGTTGCCGCAGCAGGACCAGCAGCACGCAGAGGGGGACTAGGCCGATCCCT
189 CAGACCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGACTAGGCCGATCCC-
** *
20359576 GGCTTGCGCATTCTGCCTGTTCGATAAGCCTCTCTGGCCGACTGAGCATCCGTATGCTCATTTCA
253 GGCTTGCGCATTCTGCCTGTTCG----GCC-AGCT---C-A--GAGC--CCGTACGCTCATTTCA
20359641 TGGGTTGACT
305 TGGGTTGACT
* * *
20359651 TAAGCATACGAAGTTCATTCCTAGTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGCAGGACCG
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATC-GACCAGATCGAGGGTTGCGGTAGCAGGATCG
* * *
20359716 ACAGCACACAGAGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTTTTCGATCGGCTGAGT
65 ACAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTTTTCGATCGGCTGAGC
* * *
20359781 GCCCGTAAGCCCGTTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAAC
130 GCCCGCAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCAGAC
* * * *
20359846 CGGACAGAGGGTTGTGGCAGCAAGACCAACAGCACGCAGAGGGGGAC-CGTGCCGATCCCCGGCT
194 CGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGACTAG-GCCGAT-CCCGGCT
* * * * * * * * *
20359910 TGCACATTCTGCCTCTCCGGTCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCT
257 TGCGCATTCTGCCTGTTCGGCCAGCTCAGAGCCCGTACGCTCATTTCATGGGTTGACT
* * *
20359968 TAGGCATACGGAGTTTATTCCCAGTCTAAGA
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGA
20359999 GTTTGAGCCA
Statistics
Matches: 535, Mismatches: 114, Indels: 59
0.76 0.16 0.08
Matches are distributed among these distances:
316 29 0.05
317 86 0.16
318 144 0.27
319 11 0.02
321 1 0.00
322 3 0.01
323 2 0.00
325 2 0.00
326 3 0.01
327 1 0.00
329 7 0.01
330 153 0.29
331 93 0.17
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (314 bp):
TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGACCAGATCGAGGGTTGCGGTAGCAGGATCGA
CAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTTTTCGATCGGCTGAGCG
CCCGCAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAGACCG
GACCGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGACTAGGCCGATCCCGGCTTGCG
CATTCTGCCTGTTCGGCCAGCTCAGAGCCCGTACGCTCATTTCATGGGTTGACT
Found at i:20361077 original size:159 final size:156
Alignment explanation
Indices: 20360692--20361105 Score: 409
Period size: 159 Copynumber: 2.6 Consensus size: 156
20360682 CCCAGTCTAA
* * ** * *
20360692 GCATAAGAAGTTCATTCTAAATCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGAAGTTCATTCCATGTCTAAGATCA-ACCGGACCGA-GGTTGTGGTAGCAGGATCGATA
* * *
20360757 GCACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGACTGAGCGCC
64 GCACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGACTCAGCGCC
* *
20360822 CGCACGCCCGTTTCATGGGTTGGCTTAG
129 CACACGCCCGTTTCATGGGTTGACTTAG
** * * ** * * * * * *
20360850 GCATTGGGAGTTCATTCCATGTCGAAGCCCCAACCGGACCGAGGGTATGGTAGCGGGACCAACAA
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAACCGGACCGAGGTTGTGGTAGCAGGATCGA-TA
* * * * **
20360915 GCACGTATAGGGGGATCGGGCCGATCTCCGGCTTGTGCATTATGCCTCTCCGGCCGACTCAGCGC
64 GCACGCA-AGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGACTCAGCGC
* *
20360980 CCACACGCTCGTTTCGTGGGTTGACTTAG
128 CCACACGCCCGTTTCATGGGTTGACTTAG
* * *
20361009 GCATACGAAGTTGATTCCCA-GTCTAAGATCGAACCGAACCGAGGATTGTGGCAGCAGGATCGAT
1 GCATACGAAGTTCATT-CCATGTCTAAGATC-AACCGGACCGAGG-TTGTGGTAGCAGGATCGAT
* * *
20361073 AGCACGC-AGGGGGACCGGGTCGGTCCCCAACTT
63 AGCACGCAAGGGGGACCGGGCCGATCCCCGACTT
20361106 GTAAATTCTA
Statistics
Matches: 198, Mismatches: 52, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
157 34 0.17
158 37 0.19
159 112 0.57
160 15 0.08
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAACCGGACCGAGGTTGTGGTAGCAGGATCGATAGC
ACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGACTCAGCGCCCA
CACGCCCGTTTCATGGGTTGACTTAG
Found at i:20361574 original size:25 final size:26
Alignment explanation
Indices: 20361540--20361588 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20361530 GACTTAGGGG
20361540 TACGGAGTTCA-TCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
20361565 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20361589 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:20362063 original size:158 final size:155
Alignment explanation
Indices: 20361562--20362063 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 155
20361552 CCCAGTCTAA
* * *
20361562 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCCA-GATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACAGAAT-GAGGGTTGTAGTAG-CAGGATCGA
* * ** * *
20361625 CAGCACGCATGGGGGACCGGGTTGATCCCCAACTTGCGCATTCTGCATCTCTGGCCGGCTGAGCA
63 CAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCT-GCCGGCTGAGCA
* *
20361690 CCCGAACGTTCATTTTGTGGGTTGGCTTAG
127 CCC-AACGCTCATTTTATGGGTTGGCTTAG
* ** * * * * * *
20361720 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGC-GAGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACAGAATGAGGGTTGTAGTAGCAG-GATCGAC
* * * *
20361784 AGCACGCAGAGGGGGATCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCTGGCTGGCTCAGCA
64 AGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCT-GCCGGCTGAGCA
* * *
20361849 CCCGCACGCTCATTTTATGGGTTGACCTAG
127 CCC-AACGCTCATTTTATGGGTTGGCTTAG
* * *
20361879 GCATACGAAGTTCATTCTCA-ATCTAAGATCAGACTAGAATAAGGGTTGTAGTAGCAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGAC-AGAATGAGGGTTGTAGTAGCAGGATCGAC
* * * * * *
20361943 AGCACGTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAACGC
64 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCTG-CCGGCTGAGCAC
* *
20362008 CCATACGCTCGTTTCATGGGTTGGCTTAG
128 CCA-ACGCTCATTTTATGGGTTGGCTTAG
*
20362037 GCATACGGAGTTCATTCCATGGCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20362064 CATACAGAGT
Statistics
Matches: 277, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 140 0.51
159 127 0.46
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACAGAATGAGGGTTGTAGTAGCAGGATCGACAG
CACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGCCGGCTGAGCACCCA
ACGCTCATTTTATGGGTTGGCTTAG
Found at i:20362495 original size:171 final size:170
Alignment explanation
Indices: 20362139--20362603 Score: 519
Period size: 171 Copynumber: 2.7 Consensus size: 170
20362129 CAAGATCGAT
* * * * **
20362139 AGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTACCTCTTCGATCGGCTGAGTG
1 AGCACACAGAGGGGGACCGGGCTGATCTC-GGCTTGCACATTCTACCTCTCCGATCGGCTGAGCA
* * * * *
20362204 CCTACACACTTGTTCTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCCACACGCTCGTTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTC
* *
20362269 GGACCGAGGGTTGTGGTAGCAAGACCGACAGCGGGATTGAC
130 GGACCGAGGGTTGTGGCAGCAAGACCGACAGCGGGATAGAC
* * * *
20362310 AACACACTGAGGGGGGCCGGGCCT-ATACTCGGCTTGCACATTCTACCTCTCCGATCGGTTGAGC
1 AGCACACAGAGGGGGACCGGG-CTGAT-CTCGGCTTGCACATTCTACCTCTCCGATCGGCTGAGC
* *
20362374 ACCCACACGCTCATTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTA-T
64 ACCCACACGCTCGTTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * *
20362438 CTGGATCGAGGGTTGTGGCAGTAGGACTGGCAGTGGGATCAG-C
129 C-GGACCGAGGGTTGTGGCAGCAAGACCGACAGCGGGAT-AGAC
* * *
20362481 AGCACACAGAGGGGGACCGGGCTGATCCTCGGCTTTCGCA-ATAC-GCCTCTCCGGTCGGCTGAG
1 AGCACACAGAGGGGGACCGGGCTGAT-CTCGGC-TT-GCACATTCTACCTCTCCGATCGGCTGAG
* * * *
20362544 CACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAACTTCATCCCCA-GTCTAAGC
63 CACCCACACGCTCGTTTTATGGGTTGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGC
20362604 ATACGGAGTT
Statistics
Matches: 248, Mismatches: 38, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
170 4 0.02
171 228 0.92
172 13 0.05
173 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (170 bp):
AGCACACAGAGGGGGACCGGGCTGATCTCGGCTTGCACATTCTACCTCTCCGATCGGCTGAGCAC
CCACACGCTCGTTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCG
GACCGAGGGTTGTGGCAGCAAGACCGACAGCGGGATAGAC
Found at i:20362776 original size:526 final size:508
Alignment explanation
Indices: 20361270--20362873 Score: 1423
Period size: 526 Copynumber: 3.1 Consensus size: 508
20361260 GCACGTAGGA
*
20361270 GGGACCGAACCGAT-CCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTC
1 GGGACCGAGCCGATACCC-GGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACCCGCACGCTC
** * * ** *
20361334 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
64 ATTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG-CCCAACTGGATCGAGGGT
* ** * * *
20361399 TGTGGTAGCAGGAATGATAACGGGATCGGTAGCACACAGAGGGGGACTGAACTGATCCTCGGCTT
128 TGTGG-AGTAGG-ATG-GCA-GGGATC-GCAGCACACAGAGGGGGACCGAGCTGATCCTCGGC-T
* * * * * * * **
20361464 GCACATTATGCATCTCCGACTAGCCTCTCCGGCCGGCTGAGTGCCCGCAAGCTCATTTTGTGGGT
187 -----TT-CGCA-AT---ACT-GCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGT
**
20361529 TGACTTAGGGGTACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
241 TGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * **
20361594 ACCGGATCGAGGGTTGC-AGTAGCCA-GATCGACAGCACGCATGGGGGACCGGGTTGATCCCCAA
306 ACCAGATCGAGGGTTGCGAGTAG-AAGGATCGATAGCACGCAAGGGGGACCGGGCTGATCCCCGG
* * * ** * * *
20361657 CTTGCGCATTCTGCATCTCTGGCCGGCTGAGCACCCGAACGTTCATTTTGTGGGTTGGCTTAGGC
370 CTTGCGCATTCTGCCTCTTTGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
*
20361722 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGCGAGACCGGCAGC
435 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAGACCGGCAGC
*
20361787 ACGCAGAGG
500 ACACAGAGG
* * * * * * *
20361796 GGGATCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCTGGCTGGCTCAGCACCCGCACGCTCA
1 GGGACCGAGCCGATACCCGGCTTGCGCATTCTGCCTCTCCGTC-GGCTGAGCACCCGCACGCTCA
* * * ** * *
20361861 TTTTATGGGTTGACCTAGGCATACGAAGTTCATTCTCA-ATCTAAGATCAGACTAGAAT-AAGGG
65 TTTTATGGGTTGGCTTAGGCATACGAAGTTCATTC-CATGTCTAAGCCCA-ACT-GGATCGAGGG
** * * * *
20361924 TTGT--AGT---A--GCA-GGATCGACAGCACGTAG-GGGGGACCGAGCCGATCCCCGACTTGCG
127 TTGTGGAGTAGGATGGCAGGGATCG-CAGCACACAGAGGGGGACCGAGCTGATCCTCGGCTTTCG
* * * * * *
20361980 C-ATTCTGCCTCTCCGATCGGTTGAACGCCCATACGCTCGTTTCATGGGTTGGCTTAGGCATACG
191 CAATACTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * ** *
20362044 GAGTTCATTCCATGGCTAAGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGATCGATGGT
256 GAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGT
*
20362109 TGCGGCAGTAGGACCAGAAGCAAGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTT
320 TGC-G-AGT------AGAAG---GATCGATAGCACGCA-AGGGGGACCGGGCTGATCCCCGGCTT
* * * ** *
20362174 GCGCATTCTACCTCTTCGATCGGCTGAGTGCCTACACACT--TGTTCTGTGGGTTGGCTTAGGCA
373 GCGCATTCTGCCTCTTTGGTCGGCTGAGTGCCCGCACGCTCAT-TTC-GTGGGTTGGCTTAGGCA
* *
20362237 TACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAAGACCGACAGCG
436 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGC--GA--GAC--CG
*
20362302 GGATTGACAACACACTGAGG
495 GCA--G-C-ACACA--GAGG
* * * * * * * *
20362322 GGGGCCGGGCCTATACTCGGCTTGCACATTCTACCTCTCCGATCGGTTGAGCACCCACACGCTCA
1 GGGACCGAGCCGATACCCGGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCACCCGCACGCTCA
*
20362387 TTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTATCTGGATCGAGGGTT
65 TTTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCC-AACTGGATCGAGGGTT
*
20362452 GTGGCAGTAGGACTGGCAGTGGGATCAGCAGCACACAGAGGGGGACCGGGCTGATCCTCGGCTTT
129 GTGG-AGTAGGA-TGGCA--GGGATC-GCAGCACACAGAGGGGGACCGAGCTGATCCTCGGCTTT
*
20362517 CGCAATAC-GCCTCTCCGGTCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATA
189 CGCAATACTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATA
* * * *
20362581 CGAACTTCATCCCCAGTCTAAGCATACGGAGTTCATT-CCAGTTCTAAGATCAGACTAGACCGAG
254 CGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCAGATCGAG
* * * *
20362645 GGTTGCGA-TAGTAGGATCGGTAGCACGCAAGAGGGACCGGGCTGATCCCCGGCTTGCACATTCT
317 GGTTGCGAGTAGAAGGATCGATAGCACGCAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCT
** *
20362709 GCCTCTTTGGTAAGTTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
382 GCCTCTTTGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
* ** * * * * * * *
20362774 TTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGGCAGTGGGATCGGCAACACGCAGAGG
447 TTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAGACCGGCAGCACACAGAGG
* * *
20362836 GGGACC-AGGCCGATCCCCGGCTTGTGCATTATGCCTCT
1 GGGACCGA-GCCGATACCCGGCTTGCGCATTCTGCCTCT
20362874 TTGGTAGGCT
Statistics
Matches: 853, Mismatches: 166, Indels: 130
0.74 0.14 0.11
Matches are distributed among these distances:
500 55 0.06
501 51 0.06
504 4 0.00
506 2 0.00
507 1 0.00
509 1 0.00
510 2 0.00
512 2 0.00
513 35 0.04
514 158 0.19
516 7 0.01
517 1 0.00
518 3 0.00
519 1 0.00
520 8 0.01
522 3 0.00
523 3 0.00
524 5 0.01
525 9 0.01
526 313 0.37
527 25 0.03
528 1 0.00
529 3 0.00
530 4 0.00
532 1 0.00
535 3 0.00
536 1 0.00
537 1 0.00
538 18 0.02
539 126 0.15
540 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (508 bp):
GGGACCGAGCCGATACCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCACCCGCACGCTCAT
TTTATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAACTGGATCGAGGGTTGT
GGAGTAGGATGGCAGGGATCGCAGCACACAGAGGGGGACCGAGCTGATCCTCGGCTTTCGCAATA
CTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGAG
TAGAAGGATCGATAGCACGCAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTTG
GTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAGACCGGCAGCACACAGAGG
Found at i:20363081 original size:158 final size:156
Alignment explanation
Indices: 20362602--20363103 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 156
20362592 CCCAGTCTAA
* * *
20362602 GCATACGGAGTTCATTCCA-GTTCTAAGATCAGACTAGACCGAGGGTTGCGATAGTAGGATCGGT
1 GCATACGGAGTTCATTCCATG-TCTAAGATCA-ACCAGACCGAGGGTTGCGGTAGTAGGATCGGC
* * * *
20362666 AGCACGCAAGAGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTTTGGTAAGTTGAGTGC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTTGGT-AGTTGAGCGC
*
20362731 CCGCACGCTCATTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
20362760 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGGCAGTGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAACCAGACCGAGGGTTGCGGTAGTAGGATCGGCA
* * ** * * * *
20362825 ACACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTTTGGTAGGCTCAACGC
65 GCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTTGGTA-GTTGAGCGC
* * * **
20362890 TCGCACGCTCGTTCCGTGGGTTGACTTTT
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
20362919 GCATACAGAGTTCATTCCCA-GTCTAAGATTGAACCAGACCGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGA-TCAACCAGACCGAGGGTTGCGGTAGTAGGATCGGC
* * * * *
20362983 AGCACACAGGGGGGTCTGGGCCGATCCCCGGCTTGCACATTCTGCCT-TTTCG-ACCGATTGGGC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTTGGTA--G-TTGAGC
*
20363046 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
20363077 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20363104 CATACAGAGT
Statistics
Matches: 271, Mismatches: 64, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 135 0.50
159 124 0.46
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACCAGACCGAGGGTTGCGGTAGTAGGATCGGCAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTTGGTAGTTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20363106 original size:26 final size:26
Alignment explanation
Indices: 20363077--20363129 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20363067 GTTGGCTTAG
20363077 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
20363103 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20363129 G
1 G
20363130 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20364436 original size:196 final size:196
Alignment explanation
Indices: 20364079--20364914 Score: 826
Period size: 196 Copynumber: 4.3 Consensus size: 196
20364069 CTCTCCGATC
* * * *
20364079 GGCTCAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * **
20364144 GCATACGGAGTTCATTCCCAATTTAAGATCAAACCGAATCAAAGGTTGCGGTAGCAGGACCAGCA
66 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGCGACAGCAGGACCAGCA
* ** * * * *
20364209 GCAGGATCGACAGCACACAGGGGTAACCGGGTCGGTCCTCGGCTTACGCATTCTACCTTTCCGGC
131 GCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGC
20364274 T
196 T
* * * * **
20364275 GGCTAAACGCCCGCACATTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
20364340 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCAGATCAAGGGTTGCGACAGTAGGACCAGCA
66 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGCGACAGCAGGACCAGCA
* ** * * * * * * *
20364405 GTAGGATCGGTAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCACGTT-TACCTCTTC-GA
131 GCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGC
20364468 T
196 T
* * * * * * *
20364469 CGGTTGAGCGCCTGCACGCTCGTTTCATGGGTAGGCTTGGGCATACGGAGTTCATTCCATGTCTA
1 -GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * * *
20364534 AGCATACAGAGTTCATTTCCAGTCTAAGATCAGATCGGA-CTGAGGGTT------GC--G---A-
65 AGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATC-AAGGGTTGCGACAGCAGGACCAG
** * * *
20364586 CAGCAGGATCGACAGCACGTGGGGGGGATCAGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCC
129 CAGCAGGATCGACAGCACGCAGGGGGGACCAGGTC-GATCCCCGGCTTACGCATTCTACCTCTCC
* *
20364650 GACC
193 GGCT
* * * *
20364654 GACTGAGCACCCACACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
1 GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * *
20364719 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGACTAGTA
66 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGCGACAGCAGGACCAGCA
* * * * * * *
20364784 GCAGGATCGA-AGCATGCAGGGCGGA-TAGGTCGATCCTCGGCTTACGTATTCTGCCTCTCCGGT
131 GCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGC
20364847 T
196 T
* **
20364848 GGTTGAGCACCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
20364913 GC
66 GC
20364915 CCCAGCCAGA
Statistics
Matches: 520, Mismatches: 101, Indels: 40
0.79 0.15 0.06
Matches are distributed among these distances:
182 1 0.00
183 42 0.08
184 105 0.20
185 1 0.00
187 1 0.00
189 1 0.00
190 2 0.00
192 1 0.00
194 93 0.18
195 111 0.21
196 162 0.31
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (196 bp):
GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGCGACAGCAGGACCAGCA
GCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGC
T
Found at i:20364539 original size:26 final size:26
Alignment explanation
Indices: 20364509--20364561 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20364499 GTAGGCTTGG
*
20364509 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
20364535 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
20364561 G
1 G
20364562 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:20364722 original size:26 final size:26
Alignment explanation
Indices: 20364693--20364745 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20364683 GTTGGCTTAG
*
20364693 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20364719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20364745 G
1 G
20364746 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20365099 original size:26 final size:26
Alignment explanation
Indices: 20365070--20365122 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20365060 GTTGACTTAG
20365070 GTATACGGAGTTCAAC-CCCAGTCTAA
1 GTATACGGAGTTC-ACTCCCAGTCTAA
*
20365096 GTATATGGAGTTCACTCCCAGTCTAA
1 GTATACGGAGTTCACTCCCAGTCTAA
20365122 G
1 G
20365123 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GTATACGGAGTTCACTCCCAGTCTAA
Found at i:20365543 original size:26 final size:26
Alignment explanation
Indices: 20365513--20365565 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20365503 GTTGGCTTAG
20365513 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
20365539 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20365565 G
1 G
20365566 ATTAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20368829 original size:184 final size:180
Alignment explanation
Indices: 20368520--20369067 Score: 572
Period size: 184 Copynumber: 3.0 Consensus size: 180
20368510 GTTGACTTAG
* *
20368520 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA-A--GAGGGTTACGACAGCAGGATCGGCA
* ** * * * *
20368585 GCACGCAGGGGCCACCGGGTCGATCCCCAGCTTACGTATTCTACCTCTCCGATCGGCTGAGCACC
63 GCACGTAGGGGGGACTGGGTCGATCCCCAACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACC
* *
20368650 CGCACGCTCGTTTCATGGGTTCGCTTAGGCATACTGAGTTCATTCCATGTCTAA
128 CGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * *
20368704 GCATACGGAGTTCATTCCCAATTTAAGATCAGATCAAATTGAAGGTTACGGA-AGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AA--GAGGGTTAC-GACAGCAGGATCGGC
* * * **
20368768 AGCACGTAGGGGGGACTGGGTCGATCCCCAACTTGCGCAATCTGCCTCTTCGATCGGCTGAGCGG
62 AGCACGTAGGGGGGACTGGGTCGATCCCCAACTTACGCATTCTGCCTCTCCGATCGGCTGAGCAC
* * * *
20368833 CCACACGCTTGTTTCGTGGGTTGACTTAGGCATACAGTGTTCATCCCCA-GTCTAA
127 CCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACAGAGTTCAT-TCCATGTCTAA
* * * * *
20368888 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATC--GAGGGTTGCGACAACAGGATCGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAGAGGGTTACGACAGCAGGATCGGCAGCA
* * * * *
20368951 CGTA-GGGGGA-TCGGGCCGATCCCTGAA-TTATGCATTCTGCCTCTCCGGTCGACTGAG-AGCC
66 CGTAGGGGGGACT-GGGTCGATCCC-CAACTTACGCATTCTGCCTCTCCGATCGGCTGAGCA-CC
* * * **
20369012 CGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 CGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACAGAGTTCATTCCATGTCTAA
20369066 GC
1 GC
20369068 CCCAGCCGGA
Statistics
Matches: 302, Mismatches: 52, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
177 4 0.01
178 84 0.28
179 28 0.09
183 1 0.00
184 179 0.59
185 6 0.02
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (180 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAGAGGGTTACGACAGCAGGATCGGCAGCA
CGTAGGGGGGACTGGGTCGATCCCCAACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGC
ACGCTCGTTTCGTGGGTTGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:20368891 original size:26 final size:26
Alignment explanation
Indices: 20368862--20368914 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20368852 GTTGACTTAG
*
20368862 GCATACAGTGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20368888 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20368914 G
1 G
20368915 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20369189 original size:158 final size:159
Alignment explanation
Indices: 20369022--20369384 Score: 389
Period size: 158 Copynumber: 2.3 Consensus size: 159
20369012 CGTACACCCG
* * * *
20369022 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGT
* * * * *
20369086 TGTGGTA-TGGGATTGGCAGCACGCAAAGGAGG-ACCGGG-TCGATCCTCAG-CTTGCGCATTAT
66 TGCGATAGTAGGATTGACAGCA--CAAAGGAGGCACCGGGCT-AATCC-CAGACTTGCGCATTAT
*
20369147 ACCTCTCTGGCTGACTCAGCACCCGAACGCTCG
127 ACCTCTCTGGCTGACTCAGCACCCGAACGCTCA
* * * * * *
20369180 TTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCAGATCGAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGG
* * * * * * *
20369243 TTGCGATAGTAGGATTGACAGTACACAGGGGGCACCGGGCTAATCCCCGACTTGCGTATTCTGCC
65 TTGCGATAGTAGGATTGACAGCACAAAGGAGGCACCGGGCTAATCCCAGACTTGCGCATTATACC
* * *
20369308 TCTCTGGCTGGCTGAGCACCCGTACGCTCA
130 TCTCTGGCTGACTCAGCACCCGAACGCTCA
*
20369338 TTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20369385 TACGGAGTTC
Statistics
Matches: 167, Mismatches: 30, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 15 0.09
158 136 0.81
159 16 0.10
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGT
TGCGATAGTAGGATTGACAGCACAAAGGAGGCACCGGGCTAATCCCAGACTTGCGCATTATACCT
CTCTGGCTGACTCAGCACCCGAACGCTCA
Found at i:20369193 original size:678 final size:693
Alignment explanation
Indices: 20368167--20369934 Score: 1999
Period size: 678 Copynumber: 2.5 Consensus size: 693
20368157 TCATTCCATT
* * * ** * * * *
20368167 GGTTGACTTATGCATACGGAGTTCTTATCGAGTCTAAGCATACGGAGTTTATTCCCAATCTAAGA
1 GGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* * * * **
20368232 TCGGACCGGACCGAGGGTTGCGGTAGCAGGATTGGTAGCACGTAAGGGGATCAGGTTGATCCCCG
66 T----CCGGA-CGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGGGGGATCGGGCCGATCCCCG
* * * * * * * **
20368297 -TTTTTGCCCATTCTGCCTCTTCGATTGGCTGAGCGCCAGCACACCCGTTTCGTGGGTTGATTTA
126 AATTATG--CATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTA
* * * *
20368361 GGCATAAGGAGTTCATTCCATGTCTAAGCTCCAGCCGGATAGATGGTTGTGGTAGCGAGACTGGC
189 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGTAGCG-GACTGGC
* * * * * *
20368426 AGCACGTGAAA-GGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTTTTTGACTGACTCAGCA
253 AGCACG-CAAAGGGGACCGGGTCGATCCTCAGCTTGCGCATTATGCCTCTCTGGCTGACTCAGCA
* ** *
20368490 CCCGAACGGTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
317 CCCGAACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC
* *
20368555 AGACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGGGGCCACCGGG-TCGATCCCC-AGCTT
382 AGACCGAGGGTTACGACAGTAGGATCGACAGCACACAGGGGCCACCGGGCT-AATCCCCGA-CTT
* *
20368618 ACGTATTCTACCTCTCC-GATCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTCGCTTAGGCAT
445 ACGTATTCTACCTCTCCGGCT-GGCTGAGCACCCGCACGCTCATTTCATGGGTTCGCTTAGGCAT
* * **
20368682 ACTGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATTTAAGATCAGATCAAATTGAA
509 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAAACCGAA
* * *
20368747 -G-GT-TA-C-GG-A-AGCAGGATCGGCAGCACGTAGGGGGG-ACTGGGTCGATCCCCA-ACTTG
574 GGTGTGTAGCAGGAACAGCAGGATCGGAAGCACGTAGGGGGGCACCGGGCCGAT-CCCAGACTTG
* *
20368803 CGCAATCTGCCTCTTCGATCGG-C-T-GA-G-CG-GC-CAC-ACGCTTGTTTCGTG
638 CGCAATCTGCCTCTTCGATCGGCCTTCGACGTCGAGCGCACGACGCTCGTTTCATG
*
20368851 GGTTGACTTAGGCATACAGTGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* * *
20368916 T-CGGATCGAGGGTTGCGACAACAGGATCGGTAGCACGTAGGGGGATCGGGCCGATCCCTGAATT
66 TCCGGA-CGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGGGGGATCGGGCCGATCCCCGAATT
* *
20368980 ATGCATTCTGCCTCTCCGGTCGACTGAGAGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCATA
130 ATGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATA
* *
20369045 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTATG-GGATTGGCAGCACG
195 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGTA-GCGGACTGGCAGCACG
*
20369109 CAAAGGAGGACCGGGTCGATCCTCAGCTTGCGCATTATACCTCTCTGGCTGACTCAGCACCCGAA
259 CAAAGG-GGACCGGGTCGATCCTCAGCTTGCGCATTATGCCTCTCTGGCTGACTCAGCACCCGAA
*
20369174 CGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGATCG
323 CGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCG
* * * * * *
20369239 AGGGTTGCGATAGTAGGATTGACAGTACACAGGGGGCACCGGGCTAATCCCCGACTTGCGTATTC
388 AGGGTTACGACAGTAGGATCGACAGCACACAGGGGCCACCGGGCTAATCCCCGACTTACGTATTC
* * *
20369304 TGCCTCTCTGGCTGGCTGAGCACCCGTACGCTCATTTCATGGGTTCGCTTAGGCATACGGAGTTC
453 TACCTCTCCGGCTGGCTGAGCACCCGCACGCTCATTTCATGGGTTCGCTTAGGCATACGGAGTTC
* *
20369369 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAAGGTTGTGGT
518 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAAACCGAAGG-TGT-GT
* *
20369434 AGCAGGACCAACAGCAGGATCGGAAGCACGTAGGGGGGCACCGGGCCGATCCCAGGCTTGCGCAT
581 AGCAGG---AACAGCAGGATCGGAAGCACGTAGGGGGGCACCGGGCCGATCCCAGACTTGCGCAA
* * *
20369499 TCTGCCTCTTCGGTCGGCCTTTCCGACCGGTTGAGCGCCCGACGCTCGTTTCATG
643 TCTGCCTCTTCGATCGGCC-TT-CGA-C-GTCGAGCGCACGACGCTCGTTTCATG
* * *
20369554 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-TGAAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAG
* * * ** * * *
20369618 ATCGAACCGGACTGAGGGTTACGGCTGCAAGATCGACAGCAAGTAGAGGGGACCGGGCCGGTCCC
65 AT----CCGGAC-GAGGGTTGCGGCAGCAGGATCGGTAGCACGTAG-GGGGATCGGGCCGATCCC
* ** * * * *
20369683 CGACTTGCGCATTTTGCCTCTCTGG-CTGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCAT
124 CGAATTATGCATTCTGCCTCTCCGGTC-GACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTT
* * *
20369747 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTA-AGGGTTGTGGCAGCAGGACCG
188 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC-AGAGGGTTGTGGTAGC-GGACTG
* * * * * * * * * *
20369811 GTAGCACGTAAAGGGGGACTGGGTCGATCCCCAGCTTGTGCATTCTGCATCTCCGGCCGACTGAG
251 GCAGCACGCAAA-GGGGACCGGGTCGATCCTCAGCTTGCGCATTATGCCTCTCTGGCTGACTCAG
* * * *
20369876 CGCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAG
315 CACCCGAACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG
20369935 CATACAGGGT
Statistics
Matches: 915, Mismatches: 122, Indels: 68
0.83 0.11 0.06
Matches are distributed among these distances:
676 3 0.00
677 13 0.01
678 369 0.40
679 55 0.06
680 4 0.00
681 2 0.00
683 2 0.00
684 57 0.06
685 2 0.00
689 1 0.00
690 29 0.03
691 33 0.04
692 1 0.00
694 1 0.00
696 2 0.00
699 1 0.00
700 1 0.00
701 2 0.00
702 3 0.00
703 72 0.08
707 1 0.00
708 31 0.03
709 122 0.13
710 106 0.12
711 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (693 bp):
GGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
TCCGGACGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGGGGGATCGGGCCGATCCCCGAATTA
TGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGTAGCGGACTGGCAGCACGCA
AAGGGGACCGGGTCGATCCTCAGCTTGCGCATTATGCCTCTCTGGCTGACTCAGCACCCGAACGC
TCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
GTTACGACAGTAGGATCGACAGCACACAGGGGCCACCGGGCTAATCCCCGACTTACGTATTCTAC
CTCTCCGGCTGGCTGAGCACCCGCACGCTCATTTCATGGGTTCGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAAACCGAAGGTGTGTAGCAG
GAACAGCAGGATCGGAAGCACGTAGGGGGGCACCGGGCCGATCCCAGACTTGCGCAATCTGCCTC
TTCGATCGGCCTTCGACGTCGAGCGCACGACGCTCGTTTCATG
Found at i:20369406 original size:26 final size:26
Alignment explanation
Indices: 20369356--20369408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20369346 GTTCGCTTAG
*
20369356 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20369382 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20369408 G
1 G
20369409 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20369595 original size:26 final size:26
Alignment explanation
Indices: 20369565--20369617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20369555 GTTGACTTAG
*
20369565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20369591 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20369617 G
1 G
20369618 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20369937 original size:26 final size:26
Alignment explanation
Indices: 20369908--20369960 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20369898 GTTGGCTTAG
20369908 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
*
20369934 GCATACAGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20369960 G
1 G
20369961 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20371030 original size:26 final size:26
Alignment explanation
Indices: 20370994--20371043 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20370984 GTTGACTTAG
*
20370994 GCATACAGAGTTCCTCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20371020 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
20371044 GAGATCAGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20371312 original size:159 final size:160
Alignment explanation
Indices: 20371092--20371524 Score: 468
Period size: 159 Copynumber: 2.7 Consensus size: 160
20371082 ACAGCACGTA
* ** * * *
20371092 AGGGGGACCGGGCTGATCCTTGGCTTGCGCATTCTGCCT-TTACGGCTAGCTGAGCACCCACACG
1 AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTT-CGACTGGCTGAGCACCCACACG
* * * *
20371156 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAG-CCAGATCGA
65 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCG-
* *
20371220 AGG-TTGTGGCAGCGGGACCCAC-AG-CATGCAG
129 AGGATTGTGACAGCAGGACCCACAAGACA--CAG
* * *
20371251 AGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACTGGCTTAGCACCCACACGC
1 AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACTGGCTGAGCACCCACACGC
* *
20371316 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGA
66 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATCGA
* ***
20371379 GGATTGTGATAGCAGGATTGACAAGACACAG
130 GGATTGTGACAGCAGGACCCACAAGACACAG
** * * * * * * *
20371410 -GGGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTTCTCCGACCGACTGAGCGCCCGCAAG
1 AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCC-TCTTCGACTGGCTGAGCACCCACACG
* *
20371474 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCA
65 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20371525 TACAGAGTTC
Statistics
Matches: 229, Mismatches: 36, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
158 41 0.18
159 179 0.78
160 7 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACTGGCTGAGCACCCACACGC
TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCGAG
GATTGTGACAGCAGGACCCACAAGACACAG
Found at i:20371592 original size:15 final size:15
Alignment explanation
Indices: 20371569--20371606 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
20371559 ACTGAGGGTT
*
20371569 GCAGCAGTAGGACCA
1 GCAGTAGTAGGACCA
20371584 GCAGTAGTAGGACCA
1 GCAGTAGTAGGACCA
20371599 GCATGTAG
1 GCA-GTAG
20371607 GGGGACCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.32, C:0.21, G:0.34, T:0.13
Consensus pattern (15 bp):
GCAGTAGTAGGACCA
Found at i:20371977 original size:513 final size:501
Alignment explanation
Indices: 20370956--20372036 Score: 1162
Period size: 513 Copynumber: 2.1 Consensus size: 501
20370946 TCTTTGGTCG
* * * * * * *
20370956 ACTGAGAGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCCTCCCCA-GTCTAA
1 ACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * *
20371020 GCATACGGAGTTCATTCCCAGTCTGAGATCAGACCAGATTGAGGGTTACGATAACAGGATCGACA
65 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGATAACAGGATCGACA
** *
20371085 GCACGTAAGGGGGACCGGGCTGATCCTTGGCTTGCGCATTCTGCCTTTACGGCTAGCTGAGCACC
130 GCACGTAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTACGGCTAGCTGAGCACC
* * * *
20371150 CACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAGCCAG
195 CACACGCCCGTTTCATGGGGTGACTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * *
20371215 ATCGAAGGTTGTGGCAGCGGGACCCACAGCATGCAGAGGGGGATCGGGCCGATCCCCGACTTGCG
260 ATCCAAGGTTGTGGCAGCGGGACCCACAGCACGCAGAGGGAGATCGAGCCGATCCCCGACTTGCA
* * * * *
20371280 CATTATGCCTCTTCGACTGGCTTAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
325 CATTATGCCTCTCCGACTAGCTCAACACCCACAC-CTCATTTCATGGGTTGACTTAGGCATACGG
* * * * * *
20371345 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGATTGTGATAGCAGGATTGACAAGACACAG
389 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGATTGCGACAACAGGATCGACAAGACACAG
* * *
20371410 GGGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTTCTCCGACCG
454 GGGGGACCGGACCAATCCCCGACTTACGCATTCTGCCTTCTCCGACCA
*
20371458 ACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAG
1 ACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* *
20371523 CATACAGAGTTCATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTGCAGCAGTAGGACCAGCA
66 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTAC-G-A-TA--A-CAG--
* * * * *
20371587 GTAGTAGGACCAGCATGT-AGGGGGACCTGG-TCGATCCCCGGCTTGTGCATTCTGCCTCTCCGG
122 G-A-T-CGA-CAGCACGTAAGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTACGG
* * *
20371650 CT-GACTGAGCACCCGCACGCCTGTTTCATGGGGTGACTTGGGCATAGGAAGTTCATTCCATGTC
182 CTAG-CTGAGCACCCACACGCCCGTTTCATGGGGTGACTTAGGCATAGGAAGTTCATTCCATGTC
* *** *
20371714 TAAGCCCCTA-CCGGA-CCAAGGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGAGATCGAGC
246 TAAGCCCC-AGCCAGATCCAA-GGTTGTGGCAGCGGGACCCACAGCACGCAGAGGGAGATCGAGC
* * * *
20371777 CGATCCTCGGCTTGCACATTATGCCTCTCCGGCTAGCTCAACGACCGCACA-CTCATTTTATGGG
309 CGATCCCCGACTTGCACATTATGCCTCTCCGACTAGCTCAAC-ACC-CACACCTCATTTCATGGG
* * * * * * *
20371841 TTGACTTAGGCATATGGTGTTCATTCGCAGTCTCAGATCGGACCAGACCAAGGGTTGCGGCAACA
372 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGATTGCGACAACA
* * *
20371906 GGATCGAC-AG-CACGTAGGGGTGGATCGGGCCAATCCCC-AGCTTGCGCATTCTGCC-TCTCCG
437 GGATCGACAAGACAC--AGGGG-GGACCGGACCAATCCCCGA-CTTACGCATTCTGCCTTCTCCG
* *
20371967 GCTA
498 ACCA
* * * * ** *
20371971 ACTGAGCGCCCGCATGCCCATTTCGTGGGTTAGCTTAGGTGTAGGGA-TTCAATTCCATGTCTAA
1 ACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC-ATTCCATGTCTAA
20372035 GC
65 GC
20372037 CCTGACTGGA
Statistics
Matches: 478, Mismatches: 76, Indels: 39
0.81 0.13 0.07
Matches are distributed among these distances:
501 4 0.01
502 94 0.20
503 1 0.00
504 1 0.00
505 2 0.00
507 1 0.00
508 3 0.01
510 1 0.00
511 4 0.01
512 11 0.02
513 314 0.66
514 38 0.08
515 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (501 bp):
ACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGATAACAGGATCGACAG
CACGTAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTACGGCTAGCTGAGCACCC
ACACGCCCGTTTCATGGGGTGACTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAGA
TCCAAGGTTGTGGCAGCGGGACCCACAGCACGCAGAGGGAGATCGAGCCGATCCCCGACTTGCAC
ATTATGCCTCTCCGACTAGCTCAACACCCACACCTCATTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGATTGCGACAACAGGATCGACAAGACACAGGG
GGGACCGGACCAATCCCCGACTTACGCATTCTGCCTTCTCCGACCA
Found at i:20372195 original size:159 final size:158
Alignment explanation
Indices: 20371618--20372195 Score: 560
Period size: 159 Copynumber: 3.6 Consensus size: 158
20371608 GGGACCTGGT
* * * * *
20371618 CGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCTGACTGAGCACCCGCACGC-CTGTTTCATGGG
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTAACTGAGCGCCCGCACGCTC-ATTTCATGGG
* *
20371682 GTGACTTGGGCATAGGAAGTTCATTCCATGTCTAAGCCCCT-ACCGGACCAAGGGTTGTGGCAGC
65 TTGACTTAGGCATAGG-AGTTCATTCCATGTCTAAG-CCCTGACCGGACCAAGGGTTGTGGCAGC
* *
20371746 GGGACCGGTAGCACGTAGAGGGAGATCGAGC
128 AGGACCGGTAGCACGTAGAGGGGGATCGAGC
* * * * * * * *
20371777 CGATCCTCGGCTTGCACATTATGCCTCTCCGGCTAGCTCAACGACCGCACACTCATTTTATGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTAACTGAGCGCCCGCACGCTCATTTCATGGGT
* * ** * * * *
20371842 TGACTTAGGCATATGGTGTTCATTCGCA-GTCTCAGATCGGACCAGACCAAGGGTTGCGGCAACA
66 TGACTTAGGCATA-GGAGTTCATTC-CATGTCTAAGCCCTGACCGGACCAAGGGTTGTGGCAGCA
* ** *
20371906 GGATCGACAGCACGTAG-GGGTGGATCGGGC
129 GGACCGGTAGCACGTAGAGGG-GGATCGAGC
* * * * * *
20371936 CAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTAACTGAGCGCCCGCATGCCCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTAACTGAGCGCCCGCACGCTCATTTCATGGGT
** * * *
20372001 T-AGCTTAGGTGTAGG-GATTCAATTCCATGTCTAAGCCCTGACTGGACCGAGGGTTGTGGCTGC
66 TGA-CTTAGGCATAGGAG-TTC-ATTCCATGTCTAAGCCCTGACCGGACCAAGGGTTGTGGCAGC
*
20372064 AGGACCGGTAGCACGTAGAGGGGGA-CCAGC
128 AGGACCGGTAGCACGTAGAGGGGGATCGAGC
** * * *
20372094 CTGATCCCCGGCTTGCGCATTATGCCTCTCCGG-TCGGCTTAGCGCCCTCACGCTCGTTTCATGG
1 C-GATCCCCGGCTTGCGCATTATGCCTCTCCGGCT-AACTGAGCGCCCGCACGCTCATTTCATGG
* *
20372158 CTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
64 GTTGACTTAGGCATA-GGAGTTCATTCCATGTCTAAGC
20372196 GTACGGAGTT
Statistics
Matches: 329, Mismatches: 75, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 17 0.05
159 297 0.90
160 13 0.04
161 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (158 bp):
CGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTAACTGAGCGCCCGCACGCTCATTTCATGGGT
TGACTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCTGACCGGACCAAGGGTTGTGGCAGCAGG
ACCGGTAGCACGTAGAGGGGGATCGAGC
Found at i:20373288 original size:26 final size:26
Alignment explanation
Indices: 20373252--20373304 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20373242 GTTGGCTGAG
20373252 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20373278 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20373304 G
1 G
20373305 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.