Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 191 of 402
Found at i:20373804 original size:342 final size:342
Alignment explanation
Indices: 20373346--20373999 Score: 927
Period size: 342 Copynumber: 1.9 Consensus size: 342
20373336 ACCAGCACAG
* ** * ** *
20373346 GATCGACAGCACGCATGAGGGATCGAACCAATCCGTGGCTTGTTCATTCTGCCTCTCCAGCCGAT
1 GATCGACAGCACGCATGAGGGACCGAACCAATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGAC
* *
20373411 TGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
66 TGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCC
* * * *
20373476 CCAGCCGGATCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGATC-GACAGCACGCAGAGGAAGAT
131 CCAGCCGGATCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAG-CAGCACACAGAGGAAGAC
* *
20373540 CGAGCTAATCCTCGACTTGCACATTATGCCTCTCCAATCGGCCTCTACGGCCG-ACTGAGTGCCC
195 CGAGCTAATCCTCGACTTACACATTATGCCTCTCCAATCGGCCTCTACGGCCGAAC-GAGCGCCC
* *
20373604 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAA
259 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTGGACCGAA
20373669 CCGAAGGTTGCGGCAGTAA
324 CCGAAGGTTGCGGCAGTAA
* * * *
20373688 GATCGACAGCACGCA-GGGGTGACCGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGA
1 GATCGACAGCACGCATGAGG-GACCGAACCAATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGA
* *
20373752 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
65 CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
** ** * **
20373817 CCCAGCCGGATCGAGGGTTGTGGGGGCAGGATTGGCAGCGAGATCAGCAGCATACAGAGGGGGAC
130 CCCAGCCGGATCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAGCAGCACACAGAGGAAGAC
* * * ** **
20373882 CGGGCTGATCCTCGGCTTATGCATTATGCCTCTCTGATCGGCCTCTACGGCCGAACGAGCGCCCG
195 CGAGCTAATCCTCGACTTACACATTATGCCTCTCCAATCGGCCTCTACGGCCGAACGAGCGCCCG
20373947 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
260 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
20374000 CATACGGAGT
Statistics
Matches: 272, Mismatches: 37, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
341 3 0.01
342 266 0.98
343 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (342 bp):
GATCGACAGCACGCATGAGGGACCGAACCAATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGAC
TGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCC
CCAGCCGGATCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAGCAGCACACAGAGGAAGACC
GAGCTAATCCTCGACTTACACATTATGCCTCTCCAATCGGCCTCTACGGCCGAACGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTGGACCGAACC
GAAGGTTGCGGCAGTAA
Found at i:20374003 original size:26 final size:26
Alignment explanation
Indices: 20373973--20374025 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20373963 GTTGACTTAG
20373973 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20373999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20374025 G
1 G
20374026 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20374300 original size:159 final size:160
Alignment explanation
Indices: 20373999--20374503 Score: 454
Period size: 159 Copynumber: 3.2 Consensus size: 160
20373989 CCCAGTCTAA
* * * * * *
20373999 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA-CAGGACTGAGGGTTGCGGCAGCAGAATCT
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCA-GACCGAGGGTTGCGACAGCAGGACCA
* * * *** * * * * * * * * *
20374061 GCAACACGC-AGGGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCGGTTAAG
64 ACAGCACGCAAAGGGGGATCGAACCGATCCCCGACTTGCGCATTATACCTCTTCGACCGGCTGAG
*
20374125 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
20374157 GCATAGGGAGTTCATTCCATGTGTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGC-GAGACCAA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAG-GACCAA
* * * *
20374220 CAGCACGCAAAGGGGGA-CTGAACCGATCCCC-AGCTTGCGTATTATGCCTCTTCGACTGGCTTA
65 CAGCACGCAAAGGGGGATC-GAACCGATCCCCGA-CTTGCGCATTATACCTCTTCGACCGGCTGA
* *
20374283 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
128 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
20374316 GCGTACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCAGACCGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAGGACCAA
* ** * *
20374379 CAGCACGCAGAGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTACCTCTTCGACCGGCTGAGC
65 CAGCACGCAAAGGGGGATCGAACCGATCCCCGACTTGCGCATTATACCTCTTCGACCGGCTGAGC
* *
20374444 GCCCGTACGCTCGTTTCATGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
20374475 GCATACGGAGTTCATTCTATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
20374504 TACGGAGTTC
Statistics
Matches: 279, Mismatches: 54, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.01
158 53 0.19
159 215 0.77
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAGGACCAAC
AGCACGCAAAGGGGGATCGAACCGATCCCCGACTTGCGCATTATACCTCTTCGACCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20378336 original size:159 final size:159
Alignment explanation
Indices: 20377958--20378336 Score: 430
Period size: 159 Copynumber: 2.4 Consensus size: 159
20377948 CGACTGGCCA
* * *
20377958 AGCACCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCC
1 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA-CC
* * *
20378022 CAATCGAACCGAGGGTTGTGGTAGCGGGACCGACAGCACATAGAGGGGGACCAGGCCGATCCTCG
65 CAATCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACATAGAGGGGGACCAGGCCGATCCCCG
* * *
20378087 GCTTGTGCATTATGCCTCTCTGGCCAGCTC
130 ACTTGTCCATTATACCTCTCTGGCCAGCTC
** * * * * *
20378117 AGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAGA-T
1 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACC
* * *
20378180 CAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGA-AG-GGAGGGATC-GAGCCGATC
65 CA-ATCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCAC-ATAGAGG-GGGACCAG-GCCGATC
* * * *
20378242 CCCGACTTG-CCTATTCTACCTCTCTGGCCGGTTG
126 CCCGACTTGTCC-ATTATACCTCTCTGGCCAGCTC
*
20378276 AGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
20378337 CATACGGAGT
Statistics
Matches: 182, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
158 9 0.05
159 168 0.92
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCC
AATCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACATAGAGGGGGACCAGGCCGATCCCCGA
CTTGTCCATTATACCTCTCTGGCCAGCTC
Found at i:20378339 original size:26 final size:26
Alignment explanation
Indices: 20378310--20378362 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20378300 GTTGGCTTAG
20378310 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20378336 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20378362 G
1 G
20378363 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20378542 original size:26 final size:26
Alignment explanation
Indices: 20378506--20378558 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20378496 GTTGGCTTAG
*
20378506 GCATACAGAGTTCCTT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20378532 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20378558 G
1 G
20378559 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20378594 original size:196 final size:195
Alignment explanation
Indices: 20378201--20378727 Score: 686
Period size: 196 Copynumber: 2.7 Consensus size: 195
20378191 GAGGGTTGTG
* * * *
20378201 GCAGCAGGATCGACAGCACGAAGGGAGGGATCGAGCCGATCCCCGACTTGC-CTATTCTACCTCT
1 GCAGCAGGATCGACAGCACGAA-GG-GGGACCGGGCTGATCCCCGACTTGCACTATTCTGCCTCT
* *
20378265 CTGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
64 CTGGCC-GTTGAGCACCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
* * * *
20378330 GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAACAGGA
128 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAACAGGA
20378395 CCA
193 CCA
* * * *
20378398 GTAGTAGGATCGACAGCACGCAAGGGGGACCGGGCTGATCCCTGGCTTGCACT-TTCTGCCTCTC
1 GCAGCAGGATCGACAGCACG-AAGGGGGACCGGGCTGATCCCCGACTTGCACTATTCTGCCTCTC
*
20378462 TGGCCTGTTGAGCACCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCCTTCCATG
65 TGGCC-GTTGAGCACCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
* * **
20378527 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGTAGGAC
129 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAACAGGAC
20378592 CA
194 CA
* *
20378594 GCAGCAGGATCAACAGCACGTAGGGGGGACCGGG-TCGATCCCCGACTT--ACGTATTCTGCCTC
1 GCAGCAGGATCGACAGCACG-AAGGGGGACCGGGCT-GATCCCCGACTTGCAC-TATTCTGCCTC
* * * * * * *
20378656 TCTAGTCGACTGAGCACCCGCACGCTCGTTTTGTTGGTTGGCTAAGGCATACATAGTTCATTCCA
63 TCTGGCCG-TTGAGCACCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
20378721 TGTCTAA
127 TGTCTAA
20378728 ACCCTAGTCG
Statistics
Matches: 289, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
194 2 0.01
195 3 0.01
196 260 0.90
197 22 0.08
198 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (195 bp):
GCAGCAGGATCGACAGCACGAAGGGGGACCGGGCTGATCCCCGACTTGCACTATTCTGCCTCTCT
GGCCGTTGAGCACCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAACAGGACCA
Found at i:20379306 original size:158 final size:157
Alignment explanation
Indices: 20378935--20379559 Score: 453
Period size: 158 Copynumber: 3.9 Consensus size: 157
20378925 GATCAGACCG
* * * * * *
20378935 GACTGAGGGTTACGGCAGCAGGATCGAAAGCACGCAGGGGGGACCAGGTCGATCCCCAACTTGCG
1 GACTGAGGGTTATGGCAGCGGGATCGGAAGCACGCAGGGGGGACTAGGCCGATCCCCAGCTTGCG
* * * * * * *
20379000 CATTCTACCTCTCCAG-TCGGTTGAGCACCCTGCAGGCCCGTTTCTTGGGTTGGCTTAGTCATAG
66 CATTCTGCCTCTCCAGCT-GGCTGAGCGCCC-GCACGCTC-TTTCATGGGTTGGCTTAGGCATAG
* * *
20379064 GGAGTTCATTCCATGTCTAAGCCACAGTCG
128 GGAGTTCATTCCATGCCTAAGCCACAGCCA
* * * * * * * * *
20379094 GACCGAGGGTTGTGGCAACGGGATCGGCAGCACACCGGGGGGA-TCGGACTGATCCCCAGCTTGT
1 GACTGAGGGTTATGGCAGCGGGATCGGAAGCACGCAGGGGGGACTAGG-CCGATCCCCAGCTTGC
* *
20379158 GCATTCTGCCTCTCCAGCTGGCTGAGTGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGG
65 GCATTCTGCCTCTCCAGCTGGCTGAGCGCCCGCACGCTC-TTTCATGGGTTGGCTTAGGCATAGG
*
20379223 GAGTTCATTCCATGCCTAA-CCCCAGCCA
129 GAGTTCATTCCATGCCTAAGCCACAGCCA
* **
20379251 GACTGAGGGTTATGGCAGCGGGATCGGTAGCACGCAGAGGTAGACTAGGCCGATCCCC-GACTTG
1 GACTGAGGGTTATGGCAGCGGGATCGGAAGCACGCAG-GGGGGACTAGGCCGATCCCCAG-CTTG
* * * * * * *
20379315 CGCATTATGCCTCTTC-GACCGGCTCAGCGCCCGCACGCTTCTTTCATGGGCTGACTTATGCATA
64 CGCATTCTGCCTCTCCAG-CTGGCTGAGCGCCCGCACGC-TCTTTCATGGGTTGGCTTAGGCATA
* * * * * * *
20379379 CGAAGTTCATTCCCA-GTCTAAGATCAGATCGA
127 GGGAGTTCATT-CCATGCCTAAG-CCACAGCCA
* ** * * *
20379411 -ACCGAGGGTTGA-GGCAGCAAGATC-GACAGCACGTAGGGGGGAC-CGAGCTGATCCCC-GACT
1 GACTGAGGGTT-ATGGCAGCGGGATCGGA-AGCACGCAGGGGGGACTAG-GCCGATCCCCAG-CT
** ** *** * * * *
20379471 TATGCATTCTGCCTCTCTGGCCAACTGAGCACCTGCACGCTCATTTCGTAGGTTGGCTTAGGCAT
62 TGCGCATTCTGCCTCTCCAGCTGGCTGAGCGCCCGCACGCTC-TTTCATGGGTTGGCTTAGGCAT
* *
20379536 ACGGAGTTCATTCCATGTCTAAGC
126 AGGGAGTTCATTCCATGCCTAAGC
20379560 ATACGGAGTC
Statistics
Matches: 367, Mismatches: 83, Indels: 34
0.76 0.17 0.07
Matches are distributed among these distances:
157 45 0.12
158 210 0.57
159 106 0.29
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GACTGAGGGTTATGGCAGCGGGATCGGAAGCACGCAGGGGGGACTAGGCCGATCCCCAGCTTGCG
CATTCTGCCTCTCCAGCTGGCTGAGCGCCCGCACGCTCTTTCATGGGTTGGCTTAGGCATAGGGA
GTTCATTCCATGCCTAAGCCACAGCCA
Found at i:20379568 original size:26 final size:26
Alignment explanation
Indices: 20379532--20379584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20379522 GTTGGCTTAG
*
20379532 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTCCATTCCTA-GTCTAA
20379558 GCATACGGAGTCCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCTAGTCTAA
20379584 G
1 G
20379585 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCTAGTCTAA
Found at i:20380746 original size:158 final size:158
Alignment explanation
Indices: 20380269--20380761 Score: 485
Period size: 158 Copynumber: 3.1 Consensus size: 158
20380259 CCTAGTCTAA
* * * ** * *
20380269 GCATACGGAGTTCATTTCCAGTCTAAGATCGGA-CTGGACCAAGGGTTACGGTAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACTGAGGGTTATGGTAGTAGGATCGGC
* * * ** *
20380333 AGCACGCA-GAGGGGATCGAGCTGATCCTCGGCTTGCGTATTCTGCCTCTTTGGTCGGCTGAGCG
65 AGCACGCAGGAGGGGATCGGGC-GATCCTCGGCTTGCGCATTCTGCCTCTTCGAACGGCTAAGCG
** * *
20380397 CCTACACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * * *
20380427 GCATAGGGAGTCCATT-TCATGTCTAAGCCCCAG-TTAGACTGAGTGTTGTGGTAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACTGAGGGTTATGGTAGTAGGATCGG
* * * * * *
20380490 CAGCACGTAGAAGGGGACCGGGGCGATCCTCGGCTTGCGCATTATGGCCATC--CGACCGGCTCA
64 CAGCACGCAGGAGGGGATC-GGGCGATCCTCGGCTTGCGCATTCT-GCC-TCTTCGAACGGCTAA
* *
20380553 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
20380586 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGTAGGATCGGCA
* * * * *
20380651 GCACACAGGGGGGGATCGGGCCATCCCCGGCTTGCGCATTCTGCCTCTTCGAACGGCTAAGCACC
66 GCACGCAGGAGGGGATCGGGCGATCCTCGGCTTGCGCATTCTGCCTCTTCGAACGGCTAAGCGCC
* *
20380716 CGTACGCTCGTTTCGTAGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
20380744 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20380762 ACGTCTACGC
Statistics
Matches: 264, Mismatches: 60, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 5 0.02
158 127 0.48
159 120 0.45
160 8 0.03
161 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGTAGGATCGGCA
GCACGCAGGAGGGGATCGGGCGATCCTCGGCTTGCGCATTCTGCCTCTTCGAACGGCTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20380773 original size:26 final size:26
Alignment explanation
Indices: 20380744--20380794 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20380734 GTTGGCTTAG
*
20380744 GCATACGGAGTTCA-TTCCACGTCTAC
1 GCATACGAAGTTCATTTCCA-GTCTAC
20380770 GCATACGAAGTTCATTTCCAGTCTA
1 GCATACGAAGTTCATTTCCAGTCTA
20380795 AGATTTTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAC
Found at i:20380888 original size:11 final size:11
Alignment explanation
Indices: 20380872--20380901 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
20380862 CACCATTGTC
*
20380872 GGAGCATCGTT
1 GGAGCATCGCT
20380883 GGAGCATCGCT
1 GGAGCATCGCT
20380894 GGAGCATC
1 GGAGCATC
20380902 ATCGGAGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.20, C:0.23, G:0.37, T:0.20
Consensus pattern (11 bp):
GGAGCATCGCT
Found at i:20381542 original size:26 final size:26
Alignment explanation
Indices: 20381490--20381542 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20381480 GTTGACTTAG
**
20381490 GCATACGAAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
* *
20381516 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
20381542 G
1 G
20381543 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:20381834 original size:159 final size:158
Alignment explanation
Indices: 20381516--20382019 Score: 493
Period size: 159 Copynumber: 3.2 Consensus size: 158
20381506 CCCAGTGTAA
* * ** * ****
20381516 GCATACGGAGTTCATTCCCA-GCCTAAG-ATTAGACCGGACCGAGGGTTACGGTGGTAGGACCGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAACAGGACCGA
* * * *
20381579 CAGCACGCAGGGGGGATCGGGTTGAT-CCCGACTTGCGCATTCTGCCTCTCCGATC-AGCTTAGT
65 CAGCACGCAGGGGGGATCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGA-CTCAGT
* * * *
20381642 GACCGAACGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
20381673 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGGGACCGAC
1 GCATAGGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAACAGGACCGAC
* * *
20381737 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTCAGTG
66 AGCACGCAG-GGGGGATCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGTG
*
20381802 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** *** *
20381832 GCATACAGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGATGGTTGCGGCAACAGGATCC-
1 GCATAGGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAACAGGA-CCG
* * * * ** *
20381894 ACAGCACGCAGGGTGGGATCGGGCTAGTCCCCGGCTTGCTCTTTCTGTCTCTCCGACCGGTTGAG
64 ACAGCACGCAGGG-GGGATCGGGCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAG
*
20381959 TACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
20381991 GCATAGGGAGTTGATTCCATGTCTAAGCA
1 GCATAGGGAGTTCATTCCATGTCTAAGCA
20382020 TATGGAGTTC
Statistics
Matches: 282, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 52 0.18
158 24 0.09
159 196 0.70
160 7 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAACAGGACCGAC
AGCACGCAGGGGGGATCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20382027 original size:26 final size:26
Alignment explanation
Indices: 20381991--20382043 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20381981 GTTGGCTTAG
*
20381991 GCATAGGGAGTTGATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
*
20382017 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
20382043 G
1 G
20382044 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:20382552 original size:25 final size:26
Alignment explanation
Indices: 20382514--20382565 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
20382504 GTTGACTTAG
20382514 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20382540 GCATAC-GAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20382565 G
1 G
20382566 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20383044 original size:26 final size:26
Alignment explanation
Indices: 20382995--20383047 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20382985 GTTGGCCTAG
* *
20382995 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATCCCATGTCTAA
20383021 GCATACAGAGTTCATCCCCA-GTCTAA
1 GCATACAGAGTTCAT-CCCATGTCTAA
20383047 G
1 G
20383048 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCATGTCTAA
Found at i:20383765 original size:26 final size:26
Alignment explanation
Indices: 20383729--20383781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20383719 GTTGACTTAG
20383729 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20383755 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20383781 G
1 G
20383782 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20384257 original size:159 final size:156
Alignment explanation
Indices: 20383755--20384257 Score: 474
Period size: 159 Copynumber: 3.2 Consensus size: 156
20383745 CCCAGTCTAA
* * * * *
20383755 GCATACGGAGTTCATTCC-TAGTCTAAGATCGAACCAGACTGAGGGTTGTGGTAATAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * * *
20383819 AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTTCCTCTCCAGTTGGCTAAGCG-
65 AGCACGCGGGGGGGACCAGGTCGAT-CCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGC
*
20383883 CC-TGCACGTCCGTTTCATGGGTTGGCTTAG
129 CCGTACAC-T-CGTTTCATGGGTT-GCTTAG
* *** * * ** **
20383913 GCATAGGGAGTTCATTCCATGTCTAATCCCCAGTCGGACCGAGGGTTGTGGCAGGGGGATCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGTAGGATCGACA
* * * * * * *
20383978 GCATGCAGAGAGGGATCAGGTCGATCCCTGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCCC
66 GCACGC-GGGGGGGACCAGGTCGATCCC-GGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGC
* * *
20384043 CCGCACGCCCGTTTCATGGGTTGACTTAG
129 CCGTACACTCGTTTCATGGGTTG-CTTAG
* * *
20384072 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * *
20384136 AGCACGCGGGGGTGGACCAGGTTGGTCCTCGGCTTGTGCATTCTGCCTCTCTGGTCGACTGAGTG
65 AGCACGCGGGGG-GGACCAGGTCGATCC-CGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCG
*
20384201 CCCGTTCACTCGTTTCATGGGTTAGCTTAG
128 CCCGTACACTCGTTTCATGGGTT-GCTTAG
20384231 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20384258 CATACGGAGT
Statistics
Matches: 270, Mismatches: 64, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
158 63 0.23
159 198 0.73
160 7 0.03
161 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGTAGGATCGACA
GCACGCGGGGGGGACCAGGTCGATCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGCCC
GTACACTCGTTTCATGGGTTGCTTAG
Found at i:20384261 original size:26 final size:26
Alignment explanation
Indices: 20384231--20384283 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20384221 GTTAGCTTAG
*
20384231 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTACATTCCCA-GTCTAA
20384257 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
20384283 G
1 G
20384284 ATCGGATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:20385131 original size:26 final size:26
Alignment explanation
Indices: 20385095--20385147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20385085 GTTGGCTTAG
*
20385095 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20385121 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20385147 G
1 G
20385148 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20386848 original size:25 final size:26
Alignment explanation
Indices: 20386814--20386865 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20386804 GTTGACTTAG
20386814 GCATACGGAGTTCA-TCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20386839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20386865 G
1 G
20386866 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20387133 original size:159 final size:158
Alignment explanation
Indices: 20386839--20387178 Score: 415
Period size: 159 Copynumber: 2.1 Consensus size: 158
20386829 CCCAATCTAA
*
20386839 GCATACGGAGTTCATTCCCA-GT-CTAAGAT--CAGACCGGACCAAGGGTTGCGGCAGCAGGATC
1 GCATACGGAGTTCATT-CCATGTCCT-AG-TCCCAG-CCGGACCAAGGGTTGCGGCAGCAGGACC
* * * *
20386900 GAAAGCATGCAGGGGGGACCGGGTCAATCCCCGGCTTGCGCATTTTGCCTCTCCGGCTGGCTGAG
62 GAAAGCAAGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAG
* * *
20386965 CTCCCGCACG-TCCGTTTCGTAGGTTGGCTTAG
127 CGCCCGCACGCT-CGTTTCATAGGTTAGCTTAG
* * * *
20386997 GCATAGGGAGTTCATTCCATGTCCTAGTCCCAGCCGGACCAAGGGTTGTGGCAGCCGGACCAGCA
1 GCATACGGAGTTCATTCCATGTCCTAGTCCCAGCCGGACCAAGGGTTGCGGCAGCAGGACC-GAA
* *
20387062 A-CAAGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGG-TCGGCTGAGC
65 AGCAAGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGCT-GGCTGAGC
* *
20387125 GCCTGCACGCTCGTTTCATGGGTTAGCTTAG
128 GCCCGCACGCTCGTTTCATAGGTTAGCTTAG
20387156 GCATACGGAGTTCATTCCATGTC
1 GCATACGGAGTTCATTCCATGTC
20387179 TAAGCATACA
Statistics
Matches: 157, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
157 4 0.03
158 50 0.32
159 102 0.65
160 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCCTAGTCCCAGCCGGACCAAGGGTTGCGGCAGCAGGACCGAAA
GCAAGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGCGCC
CGCACGCTCGTTTCATAGGTTAGCTTAG
Found at i:20387186 original size:26 final size:26
Alignment explanation
Indices: 20387156--20387208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20387146 GTTAGCTTAG
*
20387156 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20387182 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20387208 G
1 G
20387209 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20388191 original size:159 final size:158
Alignment explanation
Indices: 20387917--20388219 Score: 412
Period size: 159 Copynumber: 1.9 Consensus size: 158
20387907 AGTCTAAGAA
* * *
20387917 AGGGTTGCGGCAGCAGGATCGAAAGCATGCAGGGGGGATCAGGTTGATCCCCGGCTTGCGCATTC
1 AGGGTTGCGGCAGCAGGATCGAAAGCAAGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTC
* ** * * * *
20387982 TGCCTCTCTGGCTGGCTGAGCGACCGCACGCCCATTTCGTAGGTTGGCTTAGGCATAGGGAGTTC
66 TACCTCTCCAGCCGGCTGAGCGACCGCACGCCCATTCCATAGGTTGGCTTAGGCATACGGAGTTC
20388047 ATTCCATGTCTAAGTCCCAGCCGGACTG
131 ATTCCATGTCTAAGTCCCAGCCGGACTG
* **
20388075 AGGGTTGTGGCAGCCA-GATCGGCAGCAAGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCGCAT
1 AGGGTTGCGGCAG-CAGGATCGAAAGCAAGCAG-GGGGGACCAGGCTGATCCCCGGCTTGCGCAT
* * * *
20388139 TCTACCTCTCCAGCCGGCTGAGCG-CTTGCACGCTCGTTCCATGGGTTGGCTTAGGCATACGGAG
64 TCTACCTCTCCAGCCGGCTGAGCGAC-CGCACGCCCATTCCATAGGTTGGCTTAGGCATACGGAG
20388203 TTCATTCCATGTCTAAG
128 TTCATTCCATGTCTAAG
20388220 CATACAGAGT
Statistics
Matches: 125, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
158 26 0.21
159 99 0.79
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
AGGGTTGCGGCAGCAGGATCGAAAGCAAGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTC
TACCTCTCCAGCCGGCTGAGCGACCGCACGCCCATTCCATAGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGTCCCAGCCGGACTG
Found at i:20388952 original size:26 final size:26
Alignment explanation
Indices: 20388915--20388967 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20388905 TTTGACTTAG
20388915 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20388941 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
20388967 G
1 G
20388968 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20389244 original size:159 final size:157
Alignment explanation
Indices: 20389081--20389471 Score: 392
Period size: 158 Copynumber: 2.5 Consensus size: 157
20389071 CCGCATGCCT
* *
20389081 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCAAACCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGACCCCAATCAAACCGAGGG
* * * *
20389145 TTGTGGCAGC-GAGATCGACAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATG
65 TTGCGACAGCAG-GATCGACAGCACG--CAGGGGGATCGGGCCGATCCCCGACTTGCACATTATG
* * * * *
20389209 CCTCTCCGACTAGCTCAGTGCCTATACGCTC
127 CCTCTCCGACCAGCTCAATGCCAACACACTC
* * * ** * **
20389240 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAATCGAACTTAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCCCAATCAAACCGAGGG
* * * * *
20389305 TTGCGATAGCAGGATCGACGGCACGCAGGGGGATCGTGTCGATCCCCGACTTGCACATTCTGCCT
65 TTGCGACAGCAGGATCGACAGCACGCAGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCT
* * * *
20389370 CTCTGACCGGCTGAATGGCAACACACTC
130 CTCCGACCAGCTCAATGCCAACACACTC
* * * ** * *
20389398 ATTTCATGGGCTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGA-TCGGACCAGACCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGACCCCAATCAAACCGAGGG
20389462 TTGCGACAGC
65 TTGCGACAGC
20389472 TGGACCAGCA
Statistics
Matches: 187, Mismatches: 41, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
157 18 0.10
158 94 0.50
159 41 0.22
160 33 0.18
161 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGACCCCAATCAAACCGAGGGT
TGCGACAGCAGGATCGACAGCACGCAGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTC
TCCGACCAGCTCAATGCCAACACACTC
Found at i:20389725 original size:13 final size:13
Alignment explanation
Indices: 20389707--20389732 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20389697 TATGCATTAT
20389707 GCCTCTTCGGTCG
1 GCCTCTTCGGTCG
20389720 GCCTCTTCGGTCG
1 GCCTCTTCGGTCG
20389733 ACTCAACGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.31, T:0.31
Consensus pattern (13 bp):
GCCTCTTCGGTCG
Found at i:20390511 original size:26 final size:26
Alignment explanation
Indices: 20390482--20390534 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20390472 GGTTGACTAG
20390482 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
20390508 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20390534 G
1 G
20390535 ATCAAGCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20390875 original size:26 final size:26
Alignment explanation
Indices: 20390824--20390876 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20390814 GTTGGCTTAG
* *
20390824 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
20390850 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
20390876 G
1 G
20390877 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:20391556 original size:26 final size:26
Alignment explanation
Indices: 20391520--20391572 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20391510 GTTGACTTAG
20391520 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
20391546 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20391572 G
1 G
20391573 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20392095 original size:159 final size:156
Alignment explanation
Indices: 20391734--20392112 Score: 393
Period size: 156 Copynumber: 2.4 Consensus size: 156
20391724 TTCAACCGAT
* * * * *
20391734 TGAGCACCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAGA
1 TGAGCGCCC-CACGCGTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
* * * * * *
20391798 TCAAACCAGACCGAGGGTTGCGGTAGCAAGATCAGTAGCACGTAGGGGGACCGAACCGATCCCTA
64 CCAAACCAGACCGAAGGTTGCGGCAGCAAGACCAGTAGCACGTAAGGGGACAGAACCGATCCCTA
* * * **
20391863 GCTTATGCATTCTACCTCTTCGGTCGGC
129 GCTTACGCATTATACCTCTCCGACCGGC
* * * * *
20391891 TGAGCGCCCCACGCGCGTTTCATGGGTTGGCTTAGGCACAGGGAGTTTATTCCATGTCTAAGCCC
1 TGAGCGCCCCACGCGTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * * * * * *
20391956 CAGCCAGACCGAAGGTTGTGGCAGCAGGACCGGTAGCATGCTGAAGGGGACTAG-GCCGATCCCT
66 AAACCAGACCGAAGGTTGCGGCAGCAAGACCAGTAGCACG-T-AAGGGGAC-AGAACCGATCCCT
* * * *
20392020 GGCTTGCGCATTATGCCTCTCCGACCGGT
128 AGCTTACGCATTATACCTCTCCGACCGGC
*
20392049 TGAGCGCCTGCACGCGTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TGAGCGCC-CCACGCGTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20392113 ATACGGAGTT
Statistics
Matches: 179, Mismatches: 38, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
156 75 0.42
157 10 0.06
158 44 0.25
159 50 0.28
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
TGAGCGCCCCACGCGTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
AAACCAGACCGAAGGTTGCGGCAGCAAGACCAGTAGCACGTAAGGGGACAGAACCGATCCCTAGC
TTACGCATTATACCTCTCCGACCGGC
Found at i:20392121 original size:26 final size:26
Alignment explanation
Indices: 20392085--20392137 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20392075 GTTGGCTTAG
20392085 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20392111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20392137 G
1 G
20392138 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20392845 original size:26 final size:26
Alignment explanation
Indices: 20392808--20392860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20392798 GTTGACTTAG
20392808 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
* *
20392834 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
20392860 G
1 G
20392861 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:20393346 original size:25 final size:25
Alignment explanation
Indices: 20393308--20393358 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
20393298 GTTCGCTTAG
20393308 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
20393334 GCATAC-GAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
20393358 G
1 G
20393359 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 7 0.28
25 12 0.48
26 6 0.24
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:20393666 original size:171 final size:167
Alignment explanation
Indices: 20393367--20393959 Score: 516
Period size: 159 Copynumber: 3.5 Consensus size: 167
20393357 AGATCGGATT
* * * *
20393367 GGACCGAGGGTTGTGACAGTAGGACTAGCAGCAGTATCGACAGCGCGCA-AGGGGGA-CTGAGTC
1 GGACCGAGGGTTGTG-CAGCAGGAC-A-CAGCAGGATCGACAGCACGCAGAGGGGGATCAG-GTC
* * *
20393430 GATCCCCCGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCTCGTACGCTCATTTTGTGGGTT
62 GAT-CCCCGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCATTTTGTGGGTT
20393495 GGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCC
126 GGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCC
* *
20393537 GGACCGAGGGTTGTGCCAGCAGGACCGACAGCGGGATCGACAGCACGTAGAGGGGGATCAGGTCG
1 GGACCGAGGGTTGTG-CAGCAGGA-C-ACAGCAGGATCGACAGCACGCAGAGGGGGATCAGGTCG
* * ** * * * **
20393602 ATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTG
63 ATCCCC-GCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCATTTTGTGGGTTG
* * * ** * *
20393667 ACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCGGATC
127 GCTTAGGCATACGGAGTTCATACCAT-GTCTAAGCCCCAG-CC
* * * * * *
20393708 GGATCGAGGG-T-T---GC--GA-A-AGCAGGATTGACAGCACGTAGGGGGGGACCGGGAT-GAT
1 GGACCGAGGGTTGTGCAGCAGGACACAGCAGGATCGACAGCACGCAGAGGGGGATCAGG-TCGAT
* * * * * * *
20393763 CCCCGGCTTATGCATTCTGCCTCTCCAACCGACTGAGCACCCGTACTCTCATTTTGTGGGTTGGT
65 CCCC-GCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCATTTTGTGGGTTGGC
*
20393828 TTAGGCATACGGAGTTCA-ATCCATGTCTAAGCCCCAGCT
129 TTAGGCATACGGAGTTCATA-CCATGTCTAAGCCCCAGCC
* * * * *
20393867 GGACTGAGGGTTGTGGCAGCAGGCCAACAGCGGGATTGGCAGCACGCAGAGGGGGATCAGG-CTG
1 GGACCGAGGGTTGT-GCAGCAGGAC-ACAGCAGGATCGACAGCACGCAGAGGGGGATCAGGTC-G
20393931 ATCCCCGACTTACGCATTATGCCTCTCCG
63 ATCCCCG-CTTACGCATTATGCCTCTCCG
20393960 GCTAGCCTCT
Statistics
Matches: 331, Mismatches: 68, Indels: 48
0.74 0.15 0.11
Matches are distributed among these distances:
159 112 0.34
160 6 0.02
161 1 0.00
163 2 0.01
165 4 0.01
167 1 0.00
169 3 0.01
170 99 0.30
171 101 0.31
172 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (167 bp):
GGACCGAGGGTTGTGCAGCAGGACACAGCAGGATCGACAGCACGCAGAGGGGGATCAGGTCGATC
CCCGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTT
AGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCC
Found at i:20394045 original size:26 final size:26
Alignment explanation
Indices: 20394015--20394067 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20394005 GTTGACTTAG
*
20394015 GCATACGGAGTTCA-TCCACAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
20394041 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20394067 G
1 G
20394068 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20394368 original size:159 final size:159
Alignment explanation
Indices: 20394041--20394542 Score: 448
Period size: 159 Copynumber: 3.2 Consensus size: 159
20394031 CACAGTCTAA
* * * * ** * *
20394041 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGATC-GAACCGAGGGTTGCGGCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAG-ACCGAGGGTTATGGCAGCAAGATCGA
* * ** *
20394104 CAGCACGCAGGGGGGACC--ATGCTAATCCCCT-GCTTGTGCATTTTGCCTCTCCGGTCGGCTGA
64 CAGCATGCAAGGGGGACCTGA-GCCGAT-CCCTGGCTTGTGCATTATGCCTCTCCGGTCGGCTGA
* * * * *
20394166 GTGCCCACACGCCCGTTTTGTGGGTTGGCTTAG
127 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * **
20394199 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTATGGCAG-TGGCATCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTATGGCAGCAAG-ATCGA
* * * *
20394262 CAGCATGTATAGGGGGATC-GAGCCGATCCCTGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAG
64 CAGCATGCA-AGGGGGACCTGAGCCGATCCCTGGCTTGTGCATTATGCCTCTCCGGTCGGCTGAG
* * * * *
20394326 CGCCCGCACGTTCATTTCATGAGTTGACTTAT
128 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
20394358 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTATGGCAGCAAGATCGAC
* * * * ** * * * *
20394422 AGCATGCACGGGGGGCCTGGGCCGATCCGTGATTTGCGCATTCTGCATCTCCAG-CTGGCTGAGC
65 AGCATGCAAGGGGGACCTGAGCCGATCCCTGGCTTGTGCATTATGCCTCTCCGGTC-GGCTGAGC
*
20394486 GCCTGCACGCTCATTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
20394517 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20394543 ACATACAGAG
Statistics
Matches: 276, Mismatches: 55, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 66 0.24
159 200 0.72
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTATGGCAGCAAGATCGACA
GCATGCAAGGGGGACCTGAGCCGATCCCTGGCTTGTGCATTATGCCTCTCCGGTCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20394566 original size:26 final size:26
Alignment explanation
Indices: 20394518--20394568 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20394508 TTGGCTTAGG
* *
20394518 CATACGGAGTTCATTCCATGTCTAAA
1 CATACAGAGTTCATCCCATGTCTAAA
20394544 CATACAGAGTTCATACCCA-GTCTAA
1 CATACAGAGTTCAT-CCCATGTCTAA
20394569 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCATGTCTAAA
Found at i:20395619 original size:158 final size:159
Alignment explanation
Indices: 20395265--20395757 Score: 392
Period size: 159 Copynumber: 3.1 Consensus size: 159
20395255 CCCAGTCTAA
* ** * * * * * *
20395265 GCATACGAAGTTCATTCCCAGTCTAAGATAAGACCGGACC-AAGGGTTGCGGTAGTAAGATC-AG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCAGACCGAA-GGTTGTGGTAGCAGGACCGA-
* * * * * * * * ** * * *
20395328 CAGCATGCAG-GGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGCCAGTTGAGC
64 CAGCACGCAGAGGGGGATCGGGCCGATCACCGACTTGCACATTATGCCTCTCCGATCGGCTCAGC
* * *
20395392 ACCCTGCACG-TCCGTTT-AGTGGGTTGGCTTAT
129 ACCC-GCACGCT-CATTTCA-TGGGTTGACTTAG
* * ** * *
20395424 GCATAGGGAGTTAATT-CCATGTCTAAGCCCCAG-CCAGACCGAAGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGCCCAGACCGAAGGTTGTGGTAGCAGGACCGA
* * * *
20395487 CAGCACGTAGAGGGGGATCGGGCCGATC-TCGGCTTGCACATTATGCCTCTTCGATCGGCTCAGC
64 CAGCACGCAGAGGGGGATCGGGCCGATCACCGACTTGCACATTATGCCTCTCCGATCGGCTCAGC
* **
20395551 ACCCGCATGCTCATTTTGTGGGTTGACTTATG
129 ACCCGCACGCTCATTTCATGGGTTGACTTA-G
* **
20395583 G-ATACGGAGTTCATTCCCAGTCTAAGATCGGCCCAGACCGAGGGTTGTGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCAGACCGAAGGTTGTGGTAGCAGGACCGACA
* * * * * * *
20395647 GCACGCAGGGGGGGATTGGGCCGATCACCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCAGAGGGGGATCGGGCCGATCACCGACTTGCACATTATGCCTCTCCGATCGGCTCAGCAC
* * *
20395712 CCGCACGCTCGTTTCATTGGTTGGCTTAG
131 CCGCACGCTCATTTCATGGGTTGACTTAG
20395741 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
20395758 ATGTCTAAGC
Statistics
Matches: 265, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 94 0.35
159 148 0.56
160 21 0.08
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCAGACCGAAGGTTGTGGTAGCAGGACCGACA
GCACGCAGAGGGGGATCGGGCCGATCACCGACTTGCACATTATGCCTCTCCGATCGGCTCAGCAC
CCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:20395764 original size:158 final size:157
Alignment explanation
Indices: 20395328--20395768 Score: 453
Period size: 159 Copynumber: 2.8 Consensus size: 157
20395318 GTAAGATCAG
* * * * * * *
20395328 CAGCATGCA-GGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGCCAGTTGAGC
1 CAGCACGCAGGGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
20395392 ACCCTGCACG-TCCGTTTAGTGGGTTGGCTTATGCATAGGGAGTTAATTCCATGTCTAAGCCCCA
65 ACCC-GCACGCT-CGTTTA-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA
*
20395456 GCCAGACCGAAGGTTGTGGTAGCGGGACCGA
127 GCCAGACCGAAGGTTGTGGTAGCAGGACCGA
* * * * * * * *
20395487 CAGCACGTAGAGGGGGATCGGGCCGATCTCGGCTTGCACATTATGCCTCTTCGATCGGCTCAGCA
1 CAGCACGCAGGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
* * * * * *
20395552 CCCGCATGCTCATTTTGTGGGTTGACTTATGG-ATACGGAGTTCATTCCCA-GTCTAAG-ATCGG
66 CCCGCACGCTC-GTTTATGGGTTGGCTTA-GGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* **
20395614 CCCAGACCGAGGGTTGTGGTAGCAGGATTGA
128 -CCAGACCGAAGGTTGTGGTAGCAGGACCGA
* *
20395645 CAGCACGCAGGGGGGGATTGGGCCGATCACCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
1 CAGCACGCAGGGGGGGATCGGGCCGATC-CCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* *
20395710 GCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATT-CATGTCTAAGCA
65 ACCCGCACGCTCGTTT-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20395769 TACGGAGTTC
Statistics
Matches: 226, Mismatches: 45, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.02
158 98 0.43
159 109 0.48
160 15 0.07
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CAGCACGCAGGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
CCCGCACGCTCGTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCA
GACCGAAGGTTGTGGTAGCAGGACCGA
Found at i:20395793 original size:26 final size:26
Alignment explanation
Indices: 20395741--20395818 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
20395731 GTTGGCTTAG
20395741 GCATACGGAGTTCATT-CATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20395766 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* * *
20395792 GCGTATGGATTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20395818 G
1 G
20395819 ATTTTGAGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
25 16 0.33
26 29 0.60
27 3 0.06
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20396708 original size:26 final size:26
Alignment explanation
Indices: 20396672--20396724 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20396662 GTTAGCTTCG
20396672 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
20396698 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20396724 G
1 G
20396725 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:20397270 original size:355 final size:352
Alignment explanation
Indices: 20396586--20397630 Score: 1100
Period size: 368 Copynumber: 2.9 Consensus size: 352
20396576 GGTAGCACGC
* ** * * * * * *
20396586 AGGGGGACCGGACCAATCCCCAGCTTACGCATTTTGCCTCTCCAGTCGGTTGAGCGCCCGTACGC
1 AGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCTGCACGC
* * * *
20396651 TTGTTTCGTGGGTT-AGCTTCGGCATATGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATT
66 TTGTTTCGTGGGTTGA-CTTAGGCATA-CGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATT
*
20396714 CCCAGTCTAAGATCAGA-CTGGATCGAGGGTTGCGGCAGCAGGACTAGCAGCAGGATCGACAGCA
128 CCCAGTCTAAGATCAGATC-GGACCGAGGGTTGC-G-A-CA-G--T------AGGATCGACAGCA
* * * * * * * * * *
20396778 CGCAGGGGGGATCGGGCTGATCCTTGATTTACGCATTCTACCTCTCCAATCGACTAAGTGCCCGC
180 CGCAAGGGGGACCGAGCTGAT-CTTCACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGC
* *
20396843 ACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACC
244 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
* * *
20396908 CAGGGTTATGGTAGCAGGACCAGCAGCGGGATTTGTA-GCACGTAA
309 CAGGGTTATGGTAGCAGGAACAGCAGCGGGA-TCG-ACGCACGCAA
* *
20396953 AGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCTCCTGCACGC
1 AGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCTGCACGC
* * * *
20397018 TCGTTTCATGGGTTGACTTGGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
66 TTGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* *
20397083 CAGTCCAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAAGGGGGACCGA
130 CAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAAGGGGGACCGA
* * * *
20397148 GCTGATCTTCAGCTTGCACATTCTGCCTCTCCGATCGGCTGGGTGCCCACACGCTCATTTCATGG
195 GCTGATCTTCA-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCATGG
* * ** *
20397213 GTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTATGGTAGT
259 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCCAGGGTTATGGTAGC
** *
20397278 AGGAATGGCAGCGGGATCGACGGCACGCAG
324 AGGAACAGCAGCGGGATCGAC-GCACGCAA
* *
20397308 AGAGGGG-CCGGGCTGATACCCAGCTTGCTCATTATGCCTCTCCGGATGGCCTCTCCAATCGGCT
1 AG-GGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCC----GG---------TCGGCT
* * *
20397372 GAACGCCTGCACGTTTGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATCCCCAGTCCAAGCAT
52 GAGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATCCCCAGTCTAAGCAT
*
20397437 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATC-AGCAGCA
116 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGA-CAGCA
**
20397501 CGCAAGGGGGACC-AGGCTGATCCCCTACTTGCGCATTCTGCCTCTCCGA-CTGGCTGAGTGCCC
180 CGCAAGGGGGACCGA-GCTGATCTTC-ACTTGCGCATTCTGCCTCTCCGATC-GGCTGAGTGCCC
* * * *
20397564 GTACG-TCCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
242 GCACGCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
20397628 ACC
306 ACC
20397631 GAGAGTTGTT
Statistics
Matches: 576, Mismatches: 75, Indels: 53
0.82 0.11 0.08
Matches are distributed among these distances:
353 1 0.00
354 6 0.01
355 185 0.32
356 4 0.01
359 2 0.00
361 1 0.00
363 1 0.00
364 2 0.00
365 1 0.00
366 1 0.00
367 137 0.24
368 234 0.41
369 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (352 bp):
AGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCTGCACGC
TTGTTTCGTGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAAGGGGGACCGAG
CTGATCTTCACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCCAGGGTTATGGTAGCAG
GAACAGCAGCGGGATCGACGCACGCAA
Found at i:20397723 original size:158 final size:159
Alignment explanation
Indices: 20397433--20397935 Score: 443
Period size: 158 Copynumber: 3.2 Consensus size: 159
20397423 CCCAGTCCAA
* * * * * *
20397433 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGACAGCAGGATC-A
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGATTGCGGCAGCAGGACCGA
* * * * *
20397495 GCAGCACGCAAGGGGGACC-AGGCTGATCCC-CTACTTGCGCATTCTGCCTCTCCGACTGGCTGA
65 -CAGCACGCAAGGGGGACCGA-GCCGATCCCTC-GCCTGCACATTATGCCTCTCCGACTGGCTGA
*
20397558 GTGCCCGTACG-TCCGTTTCGTGGGTTGGCTTAG
127 GCGCCCGTACGCT-CGTTTCGTGGGTTGGCTTAG
* * * ** **
20397591 GCATATGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGA-GAGTTGTTGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGA-TTGCGGCAGCAGGACCGA
* * * * *
20397654 CAGCACGCAGAGGGGGATCGGGCCGAT-CCTCGCCTGCACATTATGCCTCTTCGGCTGGCTCAGC
65 CAGCACGCA-AGGGGGACCGAGCCGATCCCTCGCCTGCACATTATGCCTCTCCGACTGGCTGAGC
* * * * *
20397718 ACCCGTATGCTCGTTTCATGGGTTGACTTAT
129 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * **
20397749 GCATGCAGAGTTGATTCCCA-GTCTAAG-ATCTGACCGGACCGAGGATTGCGGTAGCAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGATTGCGGCAGCAGGACCGA
* * * * * *
20397812 CAGCACGCAAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTTTGCTTCTCCGACCGGCTGAGCG
65 CAGCACGCAAGGGGGACCGAGCCGATCCCTCGCCTGCACATTATGCCTCTCCGACTGGCTGAGCG
* *
20397877 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
130 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
20397907 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
20397936 TACGGAGTTC
Statistics
Matches: 267, Mismatches: 64, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
157 24 0.09
158 218 0.82
159 25 0.09
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGATTGCGGCAGCAGGACCGAC
AGCACGCAAGGGGGACCGAGCCGATCCCTCGCCTGCACATTATGCCTCTCCGACTGGCTGAGCGC
CCGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20397943 original size:26 final size:26
Alignment explanation
Indices: 20397907--20397959 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20397897 GTTGGCTTAG
20397907 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20397933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20397959 G
1 G
20397960 ATTGTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20398682 original size:26 final size:26
Alignment explanation
Indices: 20398630--20398682 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
20398620 GTTGACTTAG
* * *
20398630 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
20398656 GCATACAGAGTTGATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20398682 G
1 G
20398683 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20398949 original size:158 final size:159
Alignment explanation
Indices: 20398688--20399157 Score: 349
Period size: 158 Copynumber: 3.0 Consensus size: 159
20398678 CTAAGATCAG
* * * * ** * **
20398688 ACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCGTCGGC
1 ACCAAACCGAGGGTTACGGCAGCAGGACCGACAGCACTTAGAGGGGGACCGGGTCGATCCCCGGC
* * * * ** * * * ** *
20398752 TTATGCATTCTACCTCTCAAGCCGACTGAGCATCGGCACGCCCGTTTCATGGGTTGGCTTAGGCA
66 TTACGCATTATGCCACTCTCGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
* *
20398817 TAGGGAGTTAATTCCATGTCTAAGCCCCA
131 TACGGAGTTCATTCCATGTCTAAGCCCCA
* * ** * *
20398846 ACCAGATCGAGGGTTGTGGCAGTAGGACCGACAGCA-TGTAGAGGGGGACCGGGTCGATCCTCGG
1 ACCAAACCGAGGGTTACGGCAGCAGGACCGACAGCACT-TAGAGGGGGACCGGGTCGATCCCCGG
* * ** * * * * ***
20398910 TTTACGCATTATGCCTCT-TCGTTGGTTCAACGCCTGCACGCTCGTCTCATGGGTCAACTTAGGC
65 CTTACGCATTATGCCACTCTCGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
*** ** **
20398974 ATATAAAGTTCATTCCTAT-TCTAAGATCGG
130 ATACGGAGTTCATTCC-ATGTCTAAGCCCCA
* ** *
20399004 GCCAAACCGAGGGTTACGGCAGCAGGATTGACAGCACTTAGGGGGGGACCGGGTCGATCCCCGGC
1 ACCAAACCGAGGGTTACGGCAGCAGGACCGACAGCACTTAGAGGGGGACCGGGTCGATCCCCGGC
* * * * * *
20399069 TTGCGCATTCTGCCACTCTGGCCGGCTGAGCGCCCGCACGCTCC--TTCGTGGGTTGGCTTAGGC
66 TTACGCATTATGCCACTCTCGCCGGCTCAACGCCCGCACGC-CCGTTTCATGGGTTGGCTTAGGC
*
20399132 ATACGGAGTTCATTACATGTCTAAGC
130 ATACGGAGTTCATTCCATGTCTAAGC
20399158 AAACGAAGTT
Statistics
Matches: 236, Mismatches: 69, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
157 2 0.01
158 180 0.76
159 53 0.22
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (159 bp):
ACCAAACCGAGGGTTACGGCAGCAGGACCGACAGCACTTAGAGGGGGACCGGGTCGATCCCCGGC
TTACGCATTATGCCACTCTCGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCCA
Found at i:20399871 original size:25 final size:26
Alignment explanation
Indices: 20399836--20399887 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
20399826 GTTAACTTAG
*
20399836 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
20399861 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20399887 G
1 G
20399888 ATCTGGCCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20400363 original size:26 final size:26
Alignment explanation
Indices: 20400333--20400401 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
20400323 TGGGTTGCCT
20400333 TAGGCATACGGAGTTCATTCCATGTC
1 TAGGCATACGGAGTTCATTCCATGTC
*
20400359 TAGGCATGCGGAGTTCATTCCATGTC
1 TAGGCATACGGAGTTCATTCCATGTC
*
20400385 TAAGCATACGGAGTTCA
1 TAGGCATACGGAGTTCA
20400402 ATCCTAGTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCATGTC
Found at i:20401102 original size:26 final size:26
Alignment explanation
Indices: 20401073--20401125 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20401063 GTTGGATTAG
20401073 GCATAGGGAGTTCATCCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
* * *
20401099 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
20401125 G
1 G
20401126 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATAGGGAGTTCATCCCCAGTCTAA
Found at i:20401622 original size:26 final size:26
Alignment explanation
Indices: 20401572--20401624 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20401562 GTTGGCTTAG
* *
20401572 GCATATGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20401598 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20401624 G
1 G
20401625 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20401992 original size:26 final size:26
Alignment explanation
Indices: 20401963--20402015 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20401953 GTTGACTTAG
20401963 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
20401989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
20402015 G
1 G
20402016 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:20402220 original size:378 final size:367
Alignment explanation
Indices: 20401549--20402567 Score: 946
Period size: 378 Copynumber: 2.7 Consensus size: 367
20401539 GTGCCTACAC
* * * * *
20401549 GCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATTTCTAAGCATACGGAGTTCAT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTAAGCATACGGAGTTCAT
* * * * * *
20401613 TCCCAGTCTAAGATTGGACC-GAACCGAGGGTTGCGGTAGCAAGACCAGCAGTAGGATCGATAGC
65 TCCCAGTCTAAGATCGAACCAG-ATCAAGGG-T----TA-C--G----GCAGCAGGATCGACAGC
* * * * * * *
20401677 ACGTAGGGGGGATCGGGTCGATCTTTGGCTTGCACGTTCTGCCTCTCCGGCCGGCTGAGCGCCTG
117 ACCTAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
* * * * * *
20401742 TACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAGCCAGAC
182 CATGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAT
* * *
20401807 CGAGGGTTGTGGCAGCAGGATCGACAGCCGGATCGGCAGCGA-GATTGGCAGCGGGATCGACAGC
247 CGAGGGTTGTGGTAGCAGGACCGACAGCCGGATCGGCAGC-ACG--TAG-AG-GGG---GACAG-
*** * * **
20401871 ACGCAGA-GGGGGATCGGGCTG-ATCCCCGACT-TGTGCATTATGCCTCTCCGATCGGCTGAGCG
303 A-GCAGATCCCGGA-CGGGC-GCAT-CACGACTCTCTG-ACCA-GCCTCTCCGATCGGCTGAGCG
20401933 CC-CAT
362 CCGCAT
20401938 AAGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCA
1 --GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCA
* * *
20402003 TTCCCAGTCTAAGATC-AGACCAGAGT-GAGGGTTACGGCAGCAGGATCGACAGTATGC-A-GGG
64 TTCCCAGTCTAAGATCGA-ACCAGA-TCAAGGGTTACGGCAGCAGGATCGACAGCA-CCTAGGGG
* * * * *
20402064 GGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCTGCTGAGCGCCCGCATGCCCGT
126 GGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGT
* *
20402129 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGATCGAAGGTTG
191 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTG
* * ** * * * * **
20402194 TGGTAGTAGGACCGGCAGTGGGATCGGTAGCACGTAGAGGGGGACCGAGCTGATCCCTGACTTGC
256 TGGTAGCAGGACCGACAGCCGGATCGGCAGCACGTAGAGGGGGACAGAGCAGATCCCGGACGGGC
* * * * * * *
20402259 GCATTACGCCTCTCTGACCAGCTTTTTCGGTCGGTTGAGCGCCGCAT
321 GCATCACGACTCTCTGACCAGCCTCTCCGATCGGCTGAGCGCCGCAT
* * *
20402306 GCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATT
* *
20402371 CCCAGTCTAAGATCGAATCAGATCAAGGGTTGCGGCAGCAGGATCGACAGCACCTAGGGGGGACC
66 CCCAGTCTAAGATCGAACCAGATCAAGGGTTACGGCAGCAGGATCGACAGCACCTAGGGGGGACC
* * * * *
20402436 GGGTCGATCC-CTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATGCTAGTTTCG
131 GGGTCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGTTTCA
* * * * * *
20402500 TGGGTTGGCTTGGGCATAGGTAGTTCATTCCATGTCTAAACCCTAGCCGGATTGAGGGTTGTGGT
195 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGT
20402565 AGC
260 AGC
20402568 GAGACTGGTA
Statistics
Matches: 527, Mismatches: 86, Indels: 54
0.79 0.13 0.08
Matches are distributed among these distances:
365 2 0.00
366 108 0.20
367 138 0.26
368 10 0.02
369 12 0.02
370 3 0.01
371 4 0.01
374 3 0.01
375 2 0.00
376 2 0.00
377 1 0.00
378 139 0.26
379 16 0.03
383 1 0.00
385 1 0.00
386 2 0.00
390 1 0.00
391 78 0.15
392 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (367 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGAACCAGATCAAGGGTTACGGCAGCAGGATCGACAGCACCTAGGGGGGACC
GGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGTTTCAT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGTA
GCAGGACCGACAGCCGGATCGGCAGCACGTAGAGGGGGACAGAGCAGATCCCGGACGGGCGCATC
ACGACTCTCTGACCAGCCTCTCCGATCGGCTGAGCGCCGCAT
Found at i:20402358 original size:26 final size:26
Alignment explanation
Indices: 20402329--20402381 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20402319 GTTGACTTAG
20402329 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20402355 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20402381 G
1 G
20402382 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20402855 original size:26 final size:25
Alignment explanation
Indices: 20402825--20402876 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20402815 GTTGGCTTAG
*
20402825 GCATACAGCGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
20402851 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
20402876 G
1 G
20402877 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:20403068 original size:26 final size:27
Alignment explanation
Indices: 20403028--20403078 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
20403018 CATGGGTTGA
20403028 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
*
20403055 CTTA-GCATACGGAGTTCATTCCCA
1 CTTAGGCATACGGAGTTCATCCCCA
20403079 TTCTAAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATCCCCAGT
Found at i:20403766 original size:26 final size:26
Alignment explanation
Indices: 20403736--20403787 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20403726 GTTGACTTAG
* *
20403736 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGACTTCATTCCC-AGTCTAA
20403762 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
20403788 AATCAAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:20403827 original size:703 final size:704
Alignment explanation
Indices: 20402310--20403830 Score: 1877
Period size: 703 Copynumber: 2.2 Consensus size: 704
20402300 CCGCATGCTT
*
20402310 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * ** * *
20402375 GTCTAAGATCGAATCAGATCAAGGGTTGCGGCAGCAGGATCGACAGCACCTAGGGGGGACCGGGT
66 GTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGGTAGCACATAGGGGGGACCGGGC
** * * * *
20402440 CGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATGCTAGTTTCGTGGGT
131 CGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCGCCCACACGCCAATTTCGTGGGT
* * * ** *
20402505 TGGCTTGGGCATAGGTAGTTCATTCCATGTCTAAACCCTAGCCGGATTGAGGGTTGTGGTAGCGA
196 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAGCGA
** * * * * * *
20402570 GACTGGTAGCATGCAAAGGGGGACCGAGTCGATCATCGACTTGTGCATTATGCCTCTCCGGTTAG
261 GACTGACAGCACGCAAAGGGGGACCGAGCCAATCATCGACATGCGCATTATGCCTCTCCGGCTAG
** * * * * * *
20402635 CTTAGCACCCGAACACTCGTTTTATGGGTTGTTTTAGGCATACGAAGCTCATTCCCAATCTAAGA
326 CACAGCACCCGAACACTCATTTCATGGGTTATCTCAGGCATACGAAGCTCATTCCCAATCTAAAA
** * * * *
20402700 TCGGACTGAGGATTGTGGCAGTACAATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTAGCTT
391 TCGGACTGAGGATTACGGCAGCACAATCAACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTT
* * * * * *
20402765 GCTTATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTCCGTGGGTTGGCTTAGGCATA
456 ACTGATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTCCATGGGTTCGCTTAGGCATA
* * **
20402830 CAGCGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAGTCTAAGATTGAACCGGACCAAAGG
521 CAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAATCTAAGATCAAACCGGACCAAAGG
* * * *
20402895 TTGCAGCAGTAGGACCAGCAGTAGGATCGATAGCGTGTAGGGGGGCTCGGGCCGAGCCTCAGCTT
586 TTGCAGCAGCAGGACCAGCAGCAGGATCGATAGCATGTAGGGGGGCTCAGGCCGAGCCTCAGCTT
*** * * ** *
20402960 GTGTATTCTGCCTCTCCGACCGACGTCTCCAACCGGTTGAGTGCCCATATGCTC
651 GCACATTCGGCCTCTCCGACCGACCTCTCCAACCGGTTGAGCACCCATACGCTC
*
20403014 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTTAGCATACGGAGTTCATTCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
20403079 TTCTAAGATTGAACCGGATCGAGGGTTACGGCAGTAGGATCGGTAGCACATA-GGGGTATCGGGC
66 GTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGGTAGCACATAGGGGGGACCGGGC
* *
20403143 CGAT-CCTCGGCTTGCACATTCTGCCTCTCTGGTCGACTGAGCGCCCGCACGCCAATTTCGTGGG
131 CGATCCCT-GGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCGCCCACACGCCAATTTCGTGGG
* * *
20403207 TTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTG
195 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAGCG
* * * * *
20403272 GGA-TCGACATCACGCAGAGGGGGACCGAGCCAATCATCGGCATGCGTATTATGCCTCTCCGGCT
260 AGACT-GACAGCACGCAAAGGGGGACCGAGCCAATCATCGACATGCGCATTATGCCTCTCCGGCT
* * * *
20403336 GGCACAGCACCCGAACGCTCATTTCATGGGTTATCTCAGGCATACGGAGCTCATTCCCAGTCTAA
324 AGCACAGCACCCGAACACTCATTTCATGGGTTATCTCAGGCATACGAAGCTCATTCCCAATCTAA
* ** * * *
20403401 AATCGGA-TCGAGGATTACGGTAGCAGGATCAATAGCACGCAGGGGGGACCGGGCTGATCCCCGG
389 AATCGGACT-GAGGATTACGGCAGCACAATCAACAGCACGCAGGGGGGACCGGGCCGATCCCCAG
* * * *
20403465 CTTAC-GATTCTACCTCTCCGACTGACTGAGTGCCCGCATGCTCATTTCATGGGTTCGCTTAGGC
453 CTTACTGATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTCCATGGGTTCGCTTAGGC
* *
20403529 ATAC-GAAGTTTATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCAAACCGGACC
518 ATACAG-AGTTCATTCCATGTCTAAGCATACAGAGTTCATT-CCAATCTAAGATCAAACCGGACC
* * * * *
20403593 GAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCGATAGCATGTAGGGGGGC-CTAGGCCGATCCT
581 AAAGGTTGCAGCAGCAGGACCAGCAGCAGGATCGATAGCATGTAGGGGGGCTC-AGGCCGAGCCT
* * *** * *
20403657 CAGCTTGCACATTCGGCCTCTTCGGCCGACCTCTTTGATCGGTTGAGCACCCGTACGCTC
645 CAGCTTGCACATTCGGCCTCTCCGACCGACCTCTCCAACCGGTTGAGCACCCATACGCTC
* * *
20403717 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGACTTCATTCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *** *
20403782 GTCTAAAATCAAACCGGATCGAGGGTTGCAATAGTAGGGTCGGTAGCAC
66 GTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGGTAGCAC
20403831 GGACTGAGGG
Statistics
Matches: 689, Mismatches: 122, Indels: 13
0.84 0.15 0.02
Matches are distributed among these distances:
701 1 0.00
702 91 0.13
703 492 0.71
704 105 0.15
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (704 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGGTAGCACATAGGGGGGACCGGGC
CGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCGCCCACACGCCAATTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAGCGA
GACTGACAGCACGCAAAGGGGGACCGAGCCAATCATCGACATGCGCATTATGCCTCTCCGGCTAG
CACAGCACCCGAACACTCATTTCATGGGTTATCTCAGGCATACGAAGCTCATTCCCAATCTAAAA
TCGGACTGAGGATTACGGCAGCACAATCAACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTT
ACTGATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTCCATGGGTTCGCTTAGGCATA
CAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAATCTAAGATCAAACCGGACCAAAGG
TTGCAGCAGCAGGACCAGCAGCAGGATCGATAGCATGTAGGGGGGCTCAGGCCGAGCCTCAGCTT
GCACATTCGGCCTCTCCGACCGACCTCTCCAACCGGTTGAGCACCCATACGCTC
Found at i:20404832 original size:26 final size:26
Alignment explanation
Indices: 20404803--20404855 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20404793 GTTGACTTAG
20404803 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20404829 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20404855 G
1 G
20404856 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20405543 original size:26 final size:26
Alignment explanation
Indices: 20405513--20405563 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20405503 TTGACTTAGG
*
20405513 CATACGAAGTTCATCCCCAGTCTAAA
1 CATACGAAGTTCATCCCCAATCTAAA
* *
20405539 CATACGGAGTTCATTCCCAATCTAA
1 CATACGAAGTTCATCCCCAATCTAA
20405564 GATCGAACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTAAA
Found at i:20406409 original size:26 final size:26
Alignment explanation
Indices: 20406380--20406432 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20406370 GTTGACTTAG
20406380 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
20406406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20406432 G
1 G
20406433 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20406762 original size:159 final size:157
Alignment explanation
Indices: 20406406--20406901 Score: 438
Period size: 159 Copynumber: 3.2 Consensus size: 157
20406396 CCCAATCTAA
* *
20406406 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGAC--A--G-AGGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACTGAGGGTTGGGCAGCAGGATCGGTA
** * * * * * *
20406465 GCATACAGGGGGGATCGGGCTGATACTTGGCTTACGCATTCTACCTCTCCGGCCATCTGAGCGCC
65 GCACGCAGGGGGGATCAGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCC
* ***
20406530 CGCATGCCCATTTCAG-GGGTTGGCTTAG
130 CGAATGCTTGTTTC-GTGGGTTGGCTTAG
* * * ** *
20406558 GCATAGGGAGTTCATTCCATTTCTAAG-CCCCAGTCGGA-TCGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACT-GAGGGTTG-GGCAGCAGGATCGG
* * * * * *
20406621 TAGCACGCAGAGGGGGATCAGGCTGTTCCTTGGCTTGCGTATTATGCCTCTTCGGTCAGCTCAGT
63 TAGCACGCAG-GGGGGATCAGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGC
* *
20406686 GACCGAATGCTTGTTTCGTGGGTTGACTTAG
127 GCCCGAATGCTTGTTTCGTGGGTTGGCTTAG
** * * **
20406717 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGCGGTGGCAAGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACTGAGGGTTG-GGCAGCAGGATCGGT
* * * * * * * *
20406781 AGCACGTAGGGGGGATTAGGCCGGTCCCTGACTTGCACATTCTGCCTCTCCGGAT-GGCTGAGCG
64 AGCACGCAGGGGGGATCAGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGG-TCAGCTGAGCG
* *
20406845 CCCGTACGCTTGTTTCGTGGGTTGGCTTAG
128 CCCGAATGCTTGTTTCGTGGGTTGGCTTAG
20406875 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20406902 CATACGAAGA
Statistics
Matches: 270, Mismatches: 58, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
151 5 0.02
152 25 0.09
154 1 0.00
156 1 0.00
157 4 0.01
158 112 0.41
159 116 0.43
160 6 0.02
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.26
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACTGAGGGTTGGGCAGCAGGATCGGTAG
CACGCAGGGGGGATCAGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCC
GAATGCTTGTTTCGTGGGTTGGCTTAG
Found at i:20406904 original size:26 final size:26
Alignment explanation
Indices: 20406875--20406927 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20406865 GTTGGCTTAG
* *
20406875 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGATCATTCCCA-GTCTAA
20406901 GCATACGAAGATCATTCCCAGTCTAA
1 GCATACGAAGATCATTCCCAGTCTAA
20406927 G
1 G
20406928 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGATCATTCCCAGTCTAA
Found at i:20407444 original size:26 final size:26
Alignment explanation
Indices: 20407405--20407456 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20407395 GTTGGCTTAG
20407405 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20407431 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20407457 AAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20408158 original size:26 final size:26
Alignment explanation
Indices: 20408129--20408179 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20408119 CGACTTAGGC
*
20408129 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
* *
20408155 ATACAGATTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
20408180 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:20408646 original size:158 final size:157
Alignment explanation
Indices: 20408259--20409276 Score: 541
Period size: 159 Copynumber: 6.4 Consensus size: 157
20408249 TTGAGCTCTT
* *
20408259 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGA
1 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTAGA
* * * ** *
20408324 CCGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGAGGGATCC-GACTGATCCTTGACTTACG
66 CCGAGGGTTGTGGTAGCGGGA-CGACAGCACGCAGAG-GGGAACCAG-CCGATCCCCGGCTTACG
* * * * *
20408388 TATTATGCCTTTCCGATCGGCTCAACACCC
128 CATTCTGCCTTTCCGATTGGCTGAGCACCC
* ** ** * * ** *
20408418 GTACGCTTGTTTCATGGGTTAACTCAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAAAC-AG
1 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACTA-
* * * * * *
20408481 GATCGAGGGTTGCGGTAGCAGTATCGACAGCATGCAG-GGGGAACCAAGCC-AGTCCCCGGCTTG
64 GACCGAGGGTTGTGGTAGCGGGA-CGACAGCACGCAGAGGGGAACC-AGCCGA-TCCCCGGCTTA
* * * *
20408544 CACATTCTGCCTCTCCGATTGACTGAGCGCCC
126 CGCATTCTGCCTTTCCGATTGGCTGAGCACCC
* * *
20408576 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGA
1 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTAGA
* * * * * *
20408641 CCGAGGGTTGTGGCAACGGGACCAGCAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTCCGC
66 CCGAGGGTTGTGGTAGCGGGACGA-CAGCACGCAGAGGGGAACC-AGCCGATCCCCGGCTTACGC
* * **
20408706 ATTCTACCTTTTCGGCTGGCTGAGCACCC
129 ATTCTGCCTTTCCGATTGGCTGAGCACCC
* * * * * **
20408735 GCGCGCCCATTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
1 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTAGA
* * ** * * * * ** * *
20408800 CTGAAGGTTGTGCCAGCAGGACCGACAGCATGAAGAGGGCGATCGGGCTGATCCCCATG-TTACG
66 CCGAGGGTTGTGGTAGCGGGA-CGACAGCACGCAGAGGG-GAACCAGCCGATCCCC-GGCTTACG
* * * ** * *
20408864 CATTATGCCTCTCCAACCGACTCAGCACCC
128 CATTCTGCCTTTCCGATTGGCTGAGCACCC
* * * **** *
20408894 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATTGGACCT-
1 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCCAACTA
* ** ** * * * * * *
20408957 GATCGAGGGTTACGGTAGCATGATCGACAGCAC-AAGGGGGGGACTAGGTCGATCCCCGGCTTGC
64 GACCGAGGGTTGTGGTAGCGGGA-CGACAGCACGCAGAGGGGAACCA-GCCGATCCCCGGCTTAC
* * *** * * *
20409021 GCATTTTGCCTTTCTGGCCGGTTGAGCGCCT
127 GCATTCTGCCTTTCCGATTGGCTGAGCACCC
** * * * * ** * *
20409052 GCACGCTTGTTTCGTGGGTTGACTTAGGCATCCAGAGTTCATTCCACATCTAA-CCCCAGC-CGA
1 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTAG-
* * *
20409115 ACCAAAGGTTGTGGCAGGAGGACTGGCAGCGGGATCGACAGCACGCAGAGAGGG-ACCAGGCTGA
65 ACCGAGGGTTGT-------GG--T---AGCGGGA-CGACAGCACGCAGAG-GGGAACCA-GCCGA
* * * * * * *
20409179 CCCCCGGCTTACGCATTATGCCTTTTCGGTCGGTTGAGCGCCC
115 TCCCCGGCTTACGCATTCTGCCTTTCCGATTGGCTGAGCACCC
* * *
20409222 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
20409277 ATATGGAGTT
Statistics
Matches: 647, Mismatches: 176, Indels: 60
0.73 0.20 0.07
Matches are distributed among these distances:
156 3 0.00
157 25 0.04
158 184 0.28
159 307 0.47
160 14 0.02
164 2 0.00
166 1 0.00
169 15 0.02
170 89 0.14
171 7 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTAGA
CCGAGGGTTGTGGTAGCGGGACGACAGCACGCAGAGGGGAACCAGCCGATCCCCGGCTTACGCAT
TCTGCCTTTCCGATTGGCTGAGCACCC
Found at i:20409279 original size:26 final size:26
Alignment explanation
Indices: 20409249--20409301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20409239 GTTGACTTAG
20409249 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20409275 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20409301 G
1 G
20409302 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20409748 original size:26 final size:26
Alignment explanation
Indices: 20409698--20409750 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20409688 GTTGGCTTAG
*
20409698 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
20409724 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
20409750 G
1 G
20409751 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:20410521 original size:26 final size:26
Alignment explanation
Indices: 20410484--20410536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20410474 GTTGACTTAG
*
20410484 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20410510 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20410536 G
1 G
20410537 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20411238 original size:159 final size:159
Alignment explanation
Indices: 20410938--20411694 Score: 618
Period size: 159 Copynumber: 4.7 Consensus size: 159
20410928 TTACATAAGG
* * * * * ** * *
20410938 GGGACCGGGCCGATCCCTGACTTGCACA-TTCTGCCTCTCCGGCCAGCTGAACGCCCGCACGCCC
1 GGGACCGGGCCGATCCCCGGCTTGCGCATTTATGCCTCT-CGACTGGTTGAGCGCCCGCACGCCC
* * *
20411002 GTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGT
65 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* * * *
20411067 TCTGGCAAAGGGACC-AGCAGCACGCAGAGG
130 TATGGCAGAGGGACCGA-CAGCACACAGAGA
* * * *
20411097 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTAT-CTTTTCGACTGGTTGAGCACCCGCGCGCCC
1 GGGACCGGGCCGATCCCCGGCTTGCGCATT-TATGCCTCTCGACTGGTTGAGCGCCCGCACGCCC
* * *
20411161 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCGGACCGAAGGT
65 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* *
20411226 TATGGGAGAGGGACCGACAGCACACAGAGT
130 TATGGCAGAGGGACCGACAGCACACAGAGA
* * * * * * *
20411256 GCGATCGGGCCAATCCCCGGCTTGCGCA-TTATGCCTCTCCAGTCGGTTCAGCGCCCGCACGCTC
1 GGGACCGGGCCGATCCCCGGCTTGCGCATTTATGCCTCTCGACT-GGTTGAGCGCCCGCACGCCC
* * * * * ** * *
20411320 ATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCTAGTCTAAGATCGAACCAGACCGAGGG
65 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGCCCCAGCCAGACCGAGGG
** * * *
20411385 TTGCGGCAGCA-GGATCGATAGTACACAG-GA
129 TTATGGCAG-AGGGACCGACAGCACACAGAGA
* * * * **
20411415 GGGACCGGGCCGATCCCCGACTTGCGCATTT-TGCCTCTCTGGCTAGTTGAGCGCCTGCACGCTT
1 GGGACCGGGCCGATCCCCGGCTTGCGCATTTATGCCTCTC-GACTGGTTGAGCGCCCGCACGCCC
*** *
20411479 GTTTCATGGGTTGGCTTAGGCATCTAGAGTTCATTCCATGTCTAA-CCCCAGCCGGACCGAGGGT
65 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* * *
20411543 TGTGGCAGTA-GGATCGGCAGCGAGACTGGCAGCACGCAGA
130 TATGGCAG-AGGGA-CCG-A-C-AG-C--ACA-CA-G-AGA
* * * * * * * *
20411583 GGGGACCAGGCTGACCCCCGGCTTGTGCA-TTATGCCTCTCCGGCCGGTTGAGCGCCCGTACGCT
1 -GGGACCGGGCCGATCCCCGGCTTGCGCATTTATGCCTCT-CGACTGGTTGAGCGCCCGCACGCC
* * *
20411647 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
64 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
20411695 ATACGGAGTT
Statistics
Matches: 474, Mismatches: 99, Indels: 39
0.77 0.16 0.06
Matches are distributed among these distances:
157 28 0.06
158 14 0.03
159 281 0.59
160 47 0.10
161 5 0.01
164 2 0.00
165 2 0.00
166 1 0.00
168 4 0.01
169 85 0.18
170 5 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GGGACCGGGCCGATCCCCGGCTTGCGCATTTATGCCTCTCGACTGGTTGAGCGCCCGCACGCCCG
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
ATGGCAGAGGGACCGACAGCACACAGAGA
Found at i:20411697 original size:26 final size:26
Alignment explanation
Indices: 20411667--20411719 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20411657 GTTGACTTAG
20411667 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
20411693 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20411719 G
1 G
20411720 ATCATACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20412203 original size:26 final size:26
Alignment explanation
Indices: 20412151--20412203 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20412141 GTTGGCTTAG
*
20412151 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20412177 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20412203 G
1 G
20412204 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20412544 original size:26 final size:26
Alignment explanation
Indices: 20412508--20412557 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20412498 GGCTTAGGCA
20412508 TACGGAGTTCATTC-CATGTCTAAGCT
1 TACGGAGTTCATTCTCA-GTCTAAGCT
20412534 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCTCAGTCTAAG
20412558 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCTCAGTCTAAGCT
Found at i:20412964 original size:159 final size:156
Alignment explanation
Indices: 20412732--20413146 Score: 451
Period size: 157 Copynumber: 2.6 Consensus size: 156
20412722 ATCGGTTGAA
*
20412732 CACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCCCCA
1 CACCCGCACGATTGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAG-CCCA
* * * *
20412796 GTCGGACCGAAGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGCGATCGAGG-CGATCCTCGG
64 GCCGGACCGAAGGTTGTGGTAGCAGGACCGACAGCACACAG-GGG-GATCG-GGCCGATCCCCGG
** *
20412860 CTTGCGCATTATGCCTTTCCAGCCGGCTCAG
126 CTCACGCATTATGCCTCTCCAGCCGGCTCAG
* * * **
20412891 CACCCGTAC-ATTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTAAGATCA
1 CACCCGCACGATT-GTTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCA
* * ** ** * *
20412954 GACCGAACCGAGGGTTACGACAGTAGGATCGACAGCACACAGGGGGATCGGGCCGATCCCCGGCT
64 G-CCGGACCGAAGGTTGTGGTAGCAGGACCGACAGCACACAGGGGGATCGGGCCGATCCCCGGCT
* ** * *
20413019 CACGCATTTTGCCTCTCTGGCCGGTTGAG
128 CACGCATTATGCCTCTCCAGCCGGCTCAG
* *
20413048 CACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAG
1 CACCCGCACGATTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCC-AG
* *
20413113 CCGGACCGAAGGTTGTAGTAGCAGGACCGGCAGC
65 CCGGACCGAAGGTTGTGGTAGCAGGACCGACAGC
20413147 CGGATCGATA
Statistics
Matches: 205, Mismatches: 43, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
156 5 0.02
157 109 0.53
158 12 0.06
159 75 0.37
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
CACCCGCACGATTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAGC
CGGACCGAAGGTTGTGGTAGCAGGACCGACAGCACACAGGGGGATCGGGCCGATCCCCGGCTCAC
GCATTATGCCTCTCCAGCCGGCTCAG
Found at i:20413300 original size:26 final size:26
Alignment explanation
Indices: 20413264--20413316 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20413254 GTTGACTTAG
*
20413264 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20413290 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20413316 G
1 G
20413317 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20413790 original size:26 final size:26
Alignment explanation
Indices: 20413760--20413812 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20413750 GTTGGCTTAG
*
20413760 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20413786 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20413812 G
1 G
20413813 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20414141 original size:159 final size:159
Alignment explanation
Indices: 20413852--20414147 Score: 432
Period size: 159 Copynumber: 1.9 Consensus size: 159
20413842 GGACCAGCAG
** * *
20413852 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGCAACCGGATCGAGGGTTATG
1 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTAAAAGCCCCAACCGGATCGAAGGTTATG
* * * * *
20413917 GCAACGGGACCGACAGCATGCAGAGGGGGATCAGGCCGATCCTCGGCTTGCGTATTCTGCCTCTC
66 ACAACGGGACCGACAGCATGCAAAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTC
20413982 CGACCGGTTGAGCACCCACGCGCCCATTC
131 CGACCGGTTGAGCACCCACGCGCCCATTC
* * *
20414011 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTAAAAGCCCCAGCTGGA-CTGAAGGTTGT
1 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTAAAAGCCCCAACCGGATC-GAAGGTTAT
* * * *
20414075 GACAGCGGGACTGGCAGCATGCAAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT
65 GACAACGGGACCGACAGCATGCAAAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCT
20414140 CCGACCGG
130 CCGACCGG
20414148 CTCAGGTATA
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
158 1 0.01
159 119 0.99
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (159 bp):
CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTAAAAGCCCCAACCGGATCGAAGGTTATG
ACAACGGGACCGACAGCATGCAAAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTC
CGACCGGTTGAGCACCCACGCGCCCATTC
Found at i:20414342 original size:26 final size:26
Alignment explanation
Indices: 20414312--20414364 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20414302 GTTGGCTTAG
* *
20414312 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
*
20414338 GCATATAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
20414364 G
1 G
20414365 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:20414684 original size:171 final size:169
Alignment explanation
Indices: 20414377--20414705 Score: 453
Period size: 171 Copynumber: 1.9 Consensus size: 169
20414367 TGGACCGGAC
* * * * *
20414377 CGAGGGTTGTGATAGCAGGACCAGCAGCAGGATCGATAGCAGGCAGGGGGGATCGGGCCGATCCC
1 CGAGGGTTGTGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGACCCC
* * * * *
20414442 GGCTTACGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGCACACTCGTTCCGTGGGTTGGCTTAG
66 GACTTACGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACACTCGTTCCGTGGGTTGACTTAG
*
20414507 GCATACGGAGTTCATTCCAAGTCTAAGCCCCAGCTGGAT
131 GCATACGGAGTTCATCCCAAGTCTAAGCCCCAGCTGGAT
* * *
20414546 CGAGGGTTGTGGCAGCAGGACCAGCAG-TGAGATCGACAGCACGCAGAGGGGGACCGGGCTGACC
1 CGAGGGTTGTGACAGCAGGACCAGCAGCAG-GATCGACAGCACGCAG-GGGGGACCGGGCCGACC
* * * *
20414610 CTCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACT
64 C-CGACTTACGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACACTCGTTCCGTGGGTTGACT
*
20414675 TAGGCATACGGAGTTCATCCCCAGTCTAAGC
128 TAGGCATACGGAGTTCATCCCAAGTCTAAGC
20414706 ATACGTAGTT
Statistics
Matches: 138, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
168 1 0.01
169 39 0.28
170 15 0.11
171 83 0.60
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (169 bp):
CGAGGGTTGTGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGACCCC
GACTTACGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACACTCGTTCCGTGGGTTGACTTAG
GCATACGGAGTTCATCCCAAGTCTAAGCCCCAGCTGGAT
Found at i:20414707 original size:26 final size:26
Alignment explanation
Indices: 20414678--20414730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20414668 GTTGACTTAG
20414678 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20414704 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20414730 G
1 G
20414731 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20415055 original size:26 final size:26
Alignment explanation
Indices: 20415019--20415068 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20415009 GGCTTAGGCA
20415019 TACAGAGTTCATT-CCATGTCTAAGCT
1 TACAGAGTTCATTCCCA-GTCTAAGCT
20415045 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
20415069 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCT
Found at i:20415441 original size:26 final size:26
Alignment explanation
Indices: 20415411--20415463 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20415401 GTTGACTTAG
*
20415411 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
20415437 GCATACGGTGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
20415463 G
1 G
20415464 ATCAGACTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:20417895 original size:26 final size:26
Alignment explanation
Indices: 20417866--20417918 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20417856 GTTGACTTAG
*
20417866 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
20417892 GCATACGGTGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
20417918 G
1 G
20417919 ATCAGACTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:20418614 original size:26 final size:26
Alignment explanation
Indices: 20418578--20418630 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20418568 ATTGACTTAG
20418578 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
20418604 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
20418630 G
1 G
20418631 ATCGACCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:20418947 original size:159 final size:158
Alignment explanation
Indices: 20418711--20419425 Score: 655
Period size: 159 Copynumber: 4.5 Consensus size: 158
20418701 TGCACATTCT
* * * * *
20418711 GCCTCTCCGGTCGGCTGAGCGCGTCCGTACGC-CTGTTTCATGGGTTGGCTTAGACATACGGAGT
1 GCCTCTCTGGTCGGCTCAGCGC--CCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACGGAGT
* * * *
20418775 TCATTTCATGTCTAAG-TCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGATCTACAGCACGCAGA
63 TCATTCCATGTCTAAGAT--CAGACTGGACAGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGA
* *
20418838 GAGGGACCGGGTCTATCGCCGATTTGTGCATTAC
126 G-GGGACCGGGTCTATCCCCGGTTTGTGCATTAC
* * * *
20418872 GCCTCTCTGGTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCA
1 GCCTCTCTGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * *
20418937 TTCCCA-GTCTAAGATCAGACTGGACAGAGGGTTGTGACAGTAGGATCGACAGCACGTCGGAGGG
66 TT-CCATGTCTAAGATCAGACTGGACAGAGGGTTGTGGCAGCAGGATCGACAGCACG-CAGAGGG
* * * *
20419001 GATCGGGTCGATCCCCGGCTTGCGCATT-C
129 GACCGGGTCTATCCCCGGTTTGTGCATTAC
* * * * *
20419030 TGCCTCTCTGGTCGGCTGAGTGCCCGTACGC-CTGTTTCAT-GGTTGGCTTAGGCATACGAAGTT
1 -GCCTCTCTGGTCGGCTCAGCGCCCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACGGAGTT
* ** * * *
20419093 CATTTCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGCAAC-GAGATCTG-CAGCACGCAGA
64 CATTCCATGTCTAAG-ATCAGACTGGACAGAGGGTTGTGGCAGCAG-GATC-GACAGCACGCAGA
20419155 GGAGGACCGGG-CTGATCCCCGGTTTGTGCATTAC
126 GG-GGACCGGGTCT-ATCCCCGGTTTGTGCATTAC
* *
20419189 GCCTCTCTGATCGGCTCAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
20419254 TTCCCA-ATCTAAGATCAGACCGGACAGAGAGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGG
66 TT-CCATGTCTAAGATCAGACTGGACAGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-GAGGG
* * * * **
20419318 GATCGAGTC-AGTCCCCGGCTTGCGCATTTT
129 GACCGGGTCTA-TCCCCGGTTTGTGCATTAC
** * * * * * * * * *
20419348 GCCTCTCCCGTCGACTGAGCGCCTGCACGCTTGTTTCGTTGGTTGGCTTAGGCACACGGAGTTGA
1 GCCTCTCTGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
*
20419413 TTCCATGTTTAAG
66 TTCCATGTCTAAG
20419426 CATACGGACT
Statistics
Matches: 447, Mismatches: 83, Indels: 50
0.77 0.14 0.09
Matches are distributed among these distances:
157 9 0.02
158 127 0.28
159 277 0.62
160 15 0.03
161 19 0.04
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCCTCTCTGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TTCCATGTCTAAGATCAGACTGGACAGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGA
CCGGGTCTATCCCCGGTTTGTGCATTAC
Found at i:20419188 original size:317 final size:316
Alignment explanation
Indices: 20418604--20419426 Score: 1071
Period size: 317 Copynumber: 2.6 Consensus size: 316
20418594 CCCAGTCTAA
* * * ** * *
20418604 GCATATGGAGTTCATTCCCAGTCTAAGATC-GACCCAGACCGAGGGTTACGGCAACAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACAGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
20418668 AACACGCAGGGGAGATTGGGCCGATCCTCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
20418733 GTCCGTACGCCTGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTTCATGTCTAAGTCCCAGC
130 --CCGTACGCCTGTTTCAT-GGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGC
* * *
20418798 TGGACCGAGGGTTGTGGCAGCGGGATCTACAGCACGCAGAGAGGGACCGGGTCTATCGCCGATTT
192 TGGACCGAGGGTTGTGGCAACGAGATCTACAGCACGCAGAGAGGGACCGGGTCTATCCCCGATTT
* * *
20418863 GTGCATTACGCCTCTCTGGTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
257 GTGCATTACGCCTCTCTGATCGGCTCAGCACCCGCACGATCATTTCATGGGTTGACTTAG
* * * *
20418923 GCATACTGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTGTGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGCAGCAGGATCGACA
* *
20418988 GCACGTC-GGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTG
66 GCACG-CAGG-GGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
20419052 CCCGTACGCCTGTTTCATGGTTGGCTTAGGCATACGAAGTTCATTTCATGTCTAAGCCCCAGTTG
129 CCCGTACGCCTGTTTCATGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTG
* *
20419117 GACCGAGGGTTGTGGCAACGAGATCTGCAGCACGCAGAG-GAGGACCGGG-CTGATCCCCGGTTT
194 GACCGAGGGTTGTGGCAACGAGATCTACAGCACGCAGAGAG-GGACCGGGTCT-ATCCCCGATTT
* *
20419180 GTGCATTACGCCTCTCTGATCGGCTCAGCGCCCGCACGATCGTTTCATGGGTTGACTTAG
257 GTGCATTACGCCTCTCTGATCGGCTCAGCACCCGCACGATCATTTCATGGGTTGACTTAG
* *
20419240 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGAGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
20419305 GCATGCAGGGGGGGATCGAGTC-AGTCCCCGGCTTGCGCATTTTGCCTCTCCCGTCGACTGAGCG
66 GCACGCA-GGGGGGATCGGGTCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * * * * * * *
20419369 CCTGCACGCTTGTTTCGTTGGTTGGCTTAGGCACACGGAGTTGATTCCATGTTTAAGC
129 CCCGTACGCCTGTTTC-ATGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGC
20419427 ATACGGACTT
Statistics
Matches: 439, Mismatches: 56, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
316 5 0.01
317 273 0.62
318 54 0.12
319 57 0.13
320 50 0.11
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGTACGCCTGTTTCATGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTGGA
CCGAGGGTTGTGGCAACGAGATCTACAGCACGCAGAGAGGGACCGGGTCTATCCCCGATTTGTGC
ATTACGCCTCTCTGATCGGCTCAGCACCCGCACGATCATTTCATGGGTTGACTTAG
Found at i:20419809 original size:26 final size:26
Alignment explanation
Indices: 20419779--20419831 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20419769 GTTGACTTAG
20419779 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
20419805 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20419831 G
1 G
20419832 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20420158 original size:26 final size:26
Alignment explanation
Indices: 20420122--20420174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20420112 GTTGACTTAG
*
20420122 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
20420148 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
20420174 G
1 G
20420175 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:20420407 original size:343 final size:343
Alignment explanation
Indices: 20419728--20420491 Score: 1026
Period size: 343 Copynumber: 2.2 Consensus size: 343
20419718 TTTTCGATCG
* * * * * * * *
20419728 GCCTCTCCGACCGACTGAGTGCCCGTACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
20419793 TCCCCAGTCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCGAATCGGATCGAGGGTTACGATA
66 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCGAACCGGACCGAGGGTTACGACA
* * * ** *
20419858 GCAGGATCGGTAGCACGCAGGGGGGGCCGAGCCGATCCCTGGCTTACGCATTCTGACTCTTCGAC
131 GCAGGATCGGCAGCACGCAGGGCGGACCGAGCCGATCCCCAGCTTACGCATTCTGACTCTCCGAC
* *
20419923 CGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
196 CGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTA
* * * *
20419988 AGCCCCAGCCGGACCGAGGGTTGTGGCAACGGGACCGGTAGCATGCAGAGGGGTACCGGGTCGAT
261 AGCCCCAGCCGGACAGAGGGTTGTGGCAACGGGACCGGTAGCATGCAGAGGGGGACCAGGCCGAT
* *
20420053 CCTCAGCTTGCGTATTAT
326 CCCCAGCTTGCGCATTAT
* *
20420071 GCCTCTTCGATCGGCTCAGCGCCCGCACGCTTGTTACATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCA
* **
20420136 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTTTGACA
66 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCGAACCGGACCGAGGGTTACGACA
** * * *
20420201 GCAGGATCGGCAGCACAG-AGGGCGGACCGAGCCGATCCCCAGCTTGTGCGTTCTGCCTCTCCGG
131 GCAGGATCGGCAGCAC-GCAGGGCGGACCGAGCCGATCCCCAGCTTACGCATTCTGACTCTCCGA
* * **
20420265 TCGGCTGAGCGCCCGCACGCCCATTTTTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCT
195 CCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCT
* * *
20420330 AAGCCCTAGCCGGACAGAGGGTTGTGGCAGCGGGACCGGTAGCATGCAGAGGGGGATCAGGCCGA
260 AAGCCCCAGCCGGACAGAGGGTTGTGGCAACGGGACCGGTAGCATGCAGAGGGGGACCAGGCCGA
*
20420395 TCCCCGGCTTGCGCATTAT
325 TCCCCAGCTTGCGCATTAT
* * * ** * *
20420414 GCCTCTTCGGCCTGCTCAGCGCTCGCACGCTCGTTTTATGGGTTGACTTATGCATATGGAGTTCA
1 GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCA
* *
20420479 TTCCCAATCTAAG
66 TCCCCAGTCTAAG
20420492 ATCGGACCGA
Statistics
Matches: 364, Mismatches: 56, Indels: 2
0.86 0.13 0.00
Matches are distributed among these distances:
343 363 1.00
344 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (343 bp):
GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCGAACCGGACCGAGGGTTACGACA
GCAGGATCGGCAGCACGCAGGGCGGACCGAGCCGATCCCCAGCTTACGCATTCTGACTCTCCGAC
CGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTA
AGCCCCAGCCGGACAGAGGGTTGTGGCAACGGGACCGGTAGCATGCAGAGGGGGACCAGGCCGAT
CCCCAGCTTGCGCATTAT
Found at i:20420602 original size:157 final size:157
Alignment explanation
Indices: 20420148--20420648 Score: 533
Period size: 159 Copynumber: 3.2 Consensus size: 157
20420138 CCCAGTCTAA
* * *
20420148 GCATATGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTTTGACAGCAGGATCGGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGTGACAGCAGGATCGGCA
* * * * * *
20420213 GCACAGAGGGCGGACCGAGCCGATCCCCAGCTTGTGCGTTCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCATACAGGGGGGACCG-GCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
* * *
20420278 CGCACGCCCATTTTTTGGGTTGGCTTAG
130 CGCACGCTCGTTTTATGGGTTGGCTTAG
* * ** * * *
20420306 GCATAGGGAGTTCATT-CCACGTCTAAG-CCCTAGCCGGACAGAGGGTTGTGGCAGCGGGACCGG
1 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACAGAGGGTTGTGACAGCAGGATCGG
* * * * * * * *
20420369 TAGCATGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCTGCTCAGC
64 CAGCATACAG-GGGGGA-CCGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
* * *
20420434 GCTCGCACGCTCGTTTTATGGGTTGACTTAT
127 GCCCGCACGCTCGTTTTATGGGTTGGCTTAG
* * * * * *
20420465 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGAACTGAGGGTTGCT-ATAGTAGGATCGAC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTG-TGACAGCAGGATCGGC
* *
20420529 AGCATACAGGGGGGACCGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGTTCGGCTGAGCGCC
65 AGCATACAGGGGGGACCGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
** *
20420594 CGCACGCTCGTTTCGTGCGTTGGCTTAG
130 CGCACGCTCGTTTTATGGGTTGGCTTAG
*
20420622 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATATGGAGTTCATTCCCA-GTCTAAG
20420649 CAAACGGAGT
Statistics
Matches: 274, Mismatches: 61, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 90 0.33
158 58 0.21
159 115 0.42
160 8 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGTGACAGCAGGATCGGCA
GCATACAGGGGGGACCGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
GCACGCTCGTTTTATGGGTTGGCTTAG
Found at i:20421374 original size:26 final size:26
Alignment explanation
Indices: 20421345--20421397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20421335 GTTGACTTAG
*
20421345 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
20421371 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
20421397 G
1 G
20421398 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:20421857 original size:157 final size:158
Alignment explanation
Indices: 20421371--20421861 Score: 558
Period size: 159 Copynumber: 3.1 Consensus size: 158
20421361 CCCAGTCTAA
* *
20421371 GCATACGGAGTTCATTCCCAGCCTAAGATCGGATCAGACCGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGTAGGATCGACA
* *
20421436 GCACGCA-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCAGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
20421500 CGTACGCCTGTTTCATGGGTTGGCTTAG
131 CGCACGCTTGTTTCGTGGGTTGGCTTAG
* * * ** * * ** *
20421528 GCATACGGAGTTGATT-TCATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCTA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATC-AGACCGAGGGTTGTGGCAGTAGGATCGA
* *** * * * * **
20421591 CAGCACGCAGAGGGGGACCGGGCCGATCCTTTGCTTGTGCATTATGCCTCTCCGGTTGGCTCAAT
64 CAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
**
20421656 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
** * *
20421687 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGTAGTAGGATCGAAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGTAGGATCGACA
* * * * *
20421752 ACACGCAGGGGGGATCGGGTCGGTCCCCGGCTTACGCA-TCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
*
20421816 CGCGCGCTTGTTTCGTGGGTTGGCTTAG
131 CGCACGCTTGTTTCGTGGGTTGGCTTAG
* *
20421844 GCACACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20421862 ATGTTTAAGC
Statistics
Matches: 265, Mismatches: 63, Indels: 12
0.78 0.19 0.04
Matches are distributed among these distances:
156 5 0.02
157 114 0.43
158 22 0.08
159 119 0.45
160 5 0.02
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:20422277 original size:26 final size:26
Alignment explanation
Indices: 20422225--20422277 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20422215 GTTGACTTAG
* *
20422225 GCATACATAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCATAA
* *
20422251 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGCATAA
20422277 G
1 G
20422278 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCATAA
Found at i:20422597 original size:26 final size:26
Alignment explanation
Indices: 20422568--20422618 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20422558 GTTGACTTAG
20422568 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
20422594 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCTAGTCTA
20422619 GGATCGGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20422836 original size:343 final size:342
Alignment explanation
Indices: 20422210--20422937 Score: 859
Period size: 343 Copynumber: 2.1 Consensus size: 342
20422200 ATGCTCGTTT
** *
20422210 CGTGGGTTGACTTAGGCATACATAGTTCATCCCCAGCCTAAGCATACAGAGTTCATTCCCAGTAT
1 CGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGAGTTCATTCCCAGTAT
* * * * ** *
20422275 AAGATCAAACCAGATCGAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGGGTCGGGCCGAT
65 AAGATCAAACCAGACCGAGGGTTACGACAGCAAGATCGATAGCACGCAGGGGAGACCGAGCCGAT
* * * *
20422340 CCCTGGCTTACGCATTCTGCCTCTTCGGTCAACTGAGCGCCCGTACGCCCATTTCGTGGGTTGGC
130 CCCTGGCTTACGCATTCTACCTCTCCGGTCAACTGAGCACCCGCACGCCCATTTCGTGGGTTGGC
* *
20422405 TTAGGCATAGGGAGCTCATTCCATGTCTAAACCCCAGTCGGACCGAGGGTTGTGGTAGCGGGATC
195 TTAGGCATAGGGAGCTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACC
** * * * **
20422470 GGTAGCATGCAAAGGGGGACCGAGTCGAT-CCTCGACTTACGCATTATGCCTCTTCGGTCGACTC
260 GACAGCACGCAAAGGGGGACCGAGCCGATCCCT-GACTTACACATTATGCCTCTTCGACCGACTC
*
20422534 AACGCCCGTACGCCTGTTC
324 AACGCCCGCACGCCTGTTC
* * *
20422553 CGTGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGGAGTTCATTCCTAGTCT
1 CGTGGGTTGACTTAGGCATACGGAGTTCATCC-CAGTCTAAGCATACAGAGTTCATTCCCAGTAT
* ** ** ** * * *
20422618 AGGATCGGACTGGACCGAGGGTTGTGACAGCAAGATCGGTAGCACGGAGGGTAGACCGAGCCGAT
65 AAGATCAAACCAGACCGAGGGTTACGACAGCAAGATCGATAGCACGCAGGGGAGACCGAGCCGAT
*** * *
20422683 CCCCT-GCTTACGCATTCTACCTCTCCGGTCGGTTGAGCACCTGCACGCCCGTTTTC-TGGGTTG
130 -CCCTGGCTTACGCATTCTACCTCTCCGGTCAACTGAGCACCCGCACGCCC-ATTTCGTGGGTTG
* * * *
20422746 GCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGTAGCGGGA
193 GCTTAGGCATAGGGAGCTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGTAGCGGGA
* * * *
20422811 CCGACAGCACGCAGAGGGGGACCGAGCCGATCCCTGATTTGCACATTATGCCTCTTCGACCGGCT
258 CCGACAGCACGCAAAGGGGGACCGAGCCGATCCCTGACTTACACATTATGCCTCTTCGACCGACT
** * *
20422876 CAGTGCCCGCACGCTTGTTT
323 CAACGCCCGCACGCCTGTTC
** * *
20422896 TATGGGTTGACTTATGCAAACGGAGTTCATTCCCAGTCTAAG
1 CGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
20422938 ATTGGACCAA
Statistics
Matches: 322, Mismatches: 58, Indels: 10
0.83 0.15 0.03
Matches are distributed among these distances:
342 2 0.01
343 306 0.95
344 14 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (342 bp):
CGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTCATTCCCAGTATA
AGATCAAACCAGACCGAGGGTTACGACAGCAAGATCGATAGCACGCAGGGGAGACCGAGCCGATC
CCTGGCTTACGCATTCTACCTCTCCGGTCAACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCT
TAGGCATAGGGAGCTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCG
ACAGCACGCAAAGGGGGACCGAGCCGATCCCTGACTTACACATTATGCCTCTTCGACCGACTCAA
CGCCCGCACGCCTGTTC
Found at i:20422923 original size:159 final size:157
Alignment explanation
Indices: 20422725--20423095 Score: 406
Period size: 157 Copynumber: 2.4 Consensus size: 157
20422715 TTGAGCACCT
* * *
20422725 GCACGCCCGTTTTCTGGGTTGGCTTAGGCATA-GGTAGTTCATTCCATGTCTAAGCTCCAG-CCG
1 GCACGCTCGTTTTATGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCT-CAGACCA
* * * * * *
20422788 GACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCTGATTTGC
64 AACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAG-GGGGGACC-AGCCGATCCCCGACTTGC
*
20422853 ACATTATGCCTCTTCGACCGGCTCAGTGCCC
127 ACATTATGCCTCTTCGACCGGCTCAGCGCCC
* * * * * **
20422884 GCACGCTTGTTTTATGGGTTGACTTATGCAAACGGAGTTCATTCCCA-GTCTAAGATTGGACCAA
1 GCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTCAGACCAA
* * * * * *
20422948 ACTGAGGGTTGTGGCAGTAGGATCGACAGCATACAGGGGGGACCAGCTGATCCCCGACTTGCGCA
65 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACCAGCCGATCCCCGACTTGCACA
* * *
20423013 TTCTGCCTCTTCGGCCGGCTGAGCGCCC
130 TTATGCCTCTTCGACCGGCTCAGCGCCC
** * *
20423041 GCACGCTCGTTTCGTGCGTTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20423096 ATACGGAGTT
Statistics
Matches: 173, Mismatches: 35, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
156 3 0.02
157 83 0.48
158 9 0.05
159 73 0.42
160 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCAGACCAAA
CCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACCAGCCGATCCCCGACTTGCACAT
TATGCCTCTTCGACCGGCTCAGCGCCC
Found at i:20423076 original size:157 final size:157
Alignment explanation
Indices: 20422594--20423094 Score: 474
Period size: 159 Copynumber: 3.2 Consensus size: 157
20422584 CTCAGTCTAA
* * * * * **
20422594 GCATACGGAGTTCATTCC-TAGTCTAGGATCGGACTGGACCGAGGGTTGTGACAGCAAGATCGGT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* ** * * * * * *
20422658 AGCACGGAGGGTAGACCGAGCCGATCCCCTG-CTTACGCATTCTACCTCTCCGGTCGGTTGAGCA
65 AGCACGCAGGGGGGACCGAGCCGATCCCC-GACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCG
* *
20422722 CCTGCACGCCCGTTTTCTGGGTTGGCTTAG
129 CCCGCACGCTCG-TTTCTGGGTTGGCTTAG
* ** * * *
20422752 GCATA-GGTAGTTCATTCCATGTCTAAG-CTCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGG-AGTTCATTCCATGTCTAAGATTGGA-CCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
20422815 CAGCACGCAGAGGGGGACCGAGCCGATCCCTGATTTGCACATTATGCCTCTTCGACCGGCTCAGT
64 CAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC
* * * *
20422880 GCCCGCACGCTTGTTTTATGGGTTGACTTAT
128 GCCCGCACGCTCG-TTTCTGGGTTGGCTTAG
* ** * *
20422911 GCAAACGGAGTTCATTCCCA-GTCTAAGATTGGACCAAACTGAGGGTTGTGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
** *
20422975 AGCATACAGGGGGGACC-AGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
* *
20423039 CCGCACGCTCGTTTCGTGCGTTGGCATAG
130 CCGCACGCTCGTTTC-TGGGTTGGCTTAG
20423068 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20423095 CATACGGAGT
Statistics
Matches: 270, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 6 0.02
157 83 0.31
158 61 0.23
159 113 0.42
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCTGGGTTGGCTTAG
Found at i:20423104 original size:26 final size:26
Alignment explanation
Indices: 20423068--20423120 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20423058 GTTGGCATAG
20423068 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20423094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20423120 G
1 G
20423121 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20423998 original size:26 final size:26
Alignment explanation
Indices: 20423962--20424014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20423952 GTTGACTTAG
20423962 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20423988 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20424014 G
1 G
20424015 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20424279 original size:159 final size:157
Alignment explanation
Indices: 20424022--20424849 Score: 574
Period size: 159 Copynumber: 5.2 Consensus size: 157
20424012 AAGATCGGAT
* * * * * * * * * *
20424022 CGGATCGAGGGTTGCGGTAGCAGGATCGGCTGCACGTAGGGGGGACCGTGCCAATCCCCGGCTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGACTGGGCCGATCCCC-GCTTG
* * * * * * * *
20424087 CGCATTTTGCCTCTCAGGCCGACTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAG
65 CGCATTATGCCTCTCTGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
* *
20424152 GGAGTTTATTCCATGTCTAAGCCCCAGG
130 GGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * *
20424180 CGGACTGAGGGTTGTGGCAGTAGGATCGGCCGCACTCAGAGGGGGATTGGGCCGATCCCCAGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGA-GGGGACTGGGCCGATCCCC-GCTT
* * * *
20424245 GCGCATTCTACCTCTCTGGTTGGCTGAGCGCCCGCACGCCCATTTCGTAGGTTGGCTTAGGCATA
64 GCGCATTATGCCTCTCTGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
20424310 GGGAGTTCATTCCATGTCTAAGCCCCAGC
129 GGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
20424339 CGGACCGAGGGTTGTGGCAGCGGGATCGACAGTACGCCGAGGGGACTGGGCCGATCCCCGACTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGACTGGGCCGATCCCCG-CTTG
* * * * * * * *
20424404 TGCATTATGCCTCTCTGGCTGGCTCAACGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGAATAC
65 CGCATTATGCCTCTCTGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
* **
20424469 GAAGTTCATTCCCA-GTCTAAG-ATCAGAC
130 GGAGTTCATT-CCATGTCTAAGCCCCAG-C
* * * * * *
20424497 C-GACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGA-TCGAGCCAATCCTCGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGACT-GGGCCGATCC-CCGCTT
* * * * * ** * * * *
20424560 ACGCGTTTTGCCTCTC-CGATCAACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCAT
64 GCGCATTATGCCTCTCTGGCT-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
* **
20424624 ATGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
128 AGGGAGTTCATT-CCATGTCTAAGCCCCAG-C
* * * * * * *
20424654 TGGATCGAAGGTTGTGCCAGCAGGTCCAGCAGCAAGATCGGCAGCACGTAGGGAGGGACCGGGCC
1 CGGACCGAGGGTTGT-------GG--CAGCAG---GATCGACAGCACGCAGAG-GGGACTGGGCC
* * * * * * ** * * *
20424719 GATCCTCGGCTTGCGCATTCTACCTCT-TCGGCCGGTTGAGCACATGTACGCTCATTTCATGGGT
53 GATCC-CCGCTTGCGCATTATGCCTCTCT-GGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGT
* * * *
20424783 TGACTTAGGCATATGGAGTTCGTTCCATGTCTAAGCCCCAGT
116 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* *
20424825 CAGACCAAGGGTTGTGGCAGCAGGA
1 CGGACCGAGGGTTGTGGCAGCAGGA
20424850 CCGGTAGCGG
Statistics
Matches: 529, Mismatches: 115, Indels: 51
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 126 0.24
158 136 0.26
159 137 0.26
162 6 0.01
164 2 0.00
165 2 0.00
167 5 0.01
170 19 0.04
171 89 0.17
172 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGACTGGGCCGATCCCCGCTTGC
GCATTATGCCTCTCTGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:20424475 original size:158 final size:159
Alignment explanation
Indices: 20424022--20424849 Score: 521
Period size: 158 Copynumber: 5.2 Consensus size: 159
20424012 AAGATCGGAT
* * * * * * * * * *
20424022 CGGATCGAGGGTTGCGGTAGCAGGATCGGCTGCACGTAG-GGGGGACCGTGCCAATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCCGATCCCCAGCTT
* * * * * * * * * * *
20424086 GCGCATTTTGCCTCTCAGGCCGACTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATA
66 GCGCATTATACCTCTCTGGCTGGCTCAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
* *
20424151 GGGAGTTTATTCCATGTCTAAGCCCCAGG
131 GGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * *
20424180 CGGACTGAGGGTTGTGGCAGTAGGATCGGCCGCACTCAGAGGGGGATTGGGCCGATCCCCAGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCCGATCCCCAGCTT
* * * * *
20424245 GCGCATTCTACCTCTCTGGTTGGCTGAGCGCCCGCACGCCCATTTCGTAGGTTGGCTTAGGCATA
66 GCGCATTATACCTCTCTGGCTGGCTCAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
20424310 GGGAGTTCATTCCATGTCTAAGCCCCAGC
131 GGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
20424339 CGGACCGAGGGTTGTGGCAGCGGGATCGACAGTACGCCGA-GGGGACTGGGCCGATCCCC-GACT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCCGATCCCCAG-CT
* * * * * *
20424402 TGTGCATTATGCCTCTCTGGCTGGCTCAACGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGAAT
65 TGCGCATTATACCTCTCTGGCTGGCTCAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
* * **
20424467 ACGAAGTTCATTCCCA-GTCTAAG-ATCAGAC
130 AGGGAGTTCATT-CCATGTCTAAGCCCCAG-C
* * * * * *
20424497 C-GACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG-GGGGGA-TCGAGCCAATCCTCGGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACT-GGGCCGATCCCCAGCT
* * * * * * ** * ** * * *
20424559 TACGCGTTTTGCCTCTC-CGATCAACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCA
65 TGCGCATTATACCTCTCTGGCT-GGCTCAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
* **
20424623 TATGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
129 TAGGGAGTTCATT-CCATGTCTAAGCCCCAG-C
* * * * * *
20424654 TGGATCGAAGGTTGTGCCAGCAGG-TCCAGCAGCAAGATCGGCAGCACGTAGGGAGGGACCGGGC
1 CGGACCGAGGGTTGTGGCAGCAGGAT-C-G-A-C-AG--C-AC-GCA-G-A-GG-GGGACTGGGC
* * * * * * * * ** * * *
20424718 CGATCCTCGGCTTGCGCATTCTACCTCT-TCGGCCGGTTGAGCACATGTACGCTCATTTCATGGG
53 CGATCCCCAGCTTGCGCATTATACCTCTCT-GGCTGGCTCAACGCCCGCACGCCCATTTCGTGGG
* * * *
20424782 TTGACTTAGGCATATGGAGTTCGTTCCATGTCTAAGCCCCAGT
117 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* *
20424825 CAGACCAAGGGTTGTGGCAGCAGGA
1 CGGACCGAGGGTTGTGGCAGCAGGA
20424850 CCGGTAGCGG
Statistics
Matches: 527, Mismatches: 114, Indels: 44
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 128 0.24
158 143 0.27
159 137 0.26
160 1 0.00
161 1 0.00
162 2 0.00
164 1 0.00
165 1 0.00
166 3 0.01
167 1 0.00
170 5 0.01
171 97 0.18
172 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGCCGATCCCCAGCTT
GCGCATTATACCTCTCTGGCTGGCTCAACGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:20424955 original size:171 final size:171
Alignment explanation
Indices: 20424584--20424988 Score: 413
Period size: 171 Copynumber: 2.4 Consensus size: 171
20424574 TCCGATCAAC
* *
20424584 TGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
1 TGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGAC
* * * * **
20424649 CAGACTGGATCGAAGGTTGTGCCAGCAGGTCCAGCAGCAAGATCGGCAGCACGTAGGGAGGGACC
66 CAGACTAGATCCAAGGTTGTGCCAGCAGGACCAGCAGCAAGATCGGCAGCAAGTAAAGAGGGACC
* * * *
20424714 GGGCCGATCCTCGGCTTGCGCATTCTACCTCTTCGGCCGGT
131 GGGCCGATCCCCAGCTTGCGCATTATACCTCTTCAGCCGGT
** ** * * ** *
20424755 TGAGCACATGTACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCGTT-CCATGTCTAAGC
1 TGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-
* * * * * ** *
20424819 CCCAGTC-AGA-CCAAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGGTAGCAAGTAAA-AGGG
64 ACCAGACTAGATCCAA-GGTTGTGCCAGCAGGACCAGCAGCAAGATCGGCAGCAAGTAAAGA-GG
* * * *
20424881 GATCGGGCTGATCCCCAGCTTGCGCATTATGCCTTTTCAGCCGGT
127 GACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTTCAGCCGGT
* * * *
20424926 TGAGTGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
1 TGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
20424989 CATATGTAGT
Statistics
Matches: 183, Mismatches: 46, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
170 7 0.04
171 169 0.92
172 7 0.04
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (171 bp):
TGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGAC
CAGACTAGATCCAAGGTTGTGCCAGCAGGACCAGCAGCAAGATCGGCAGCAAGTAAAGAGGGACC
GGGCCGATCCCCAGCTTGCGCATTATACCTCTTCAGCCGGT
Found at i:20425034 original size:58 final size:58
Alignment explanation
Indices: 20424944--20425062 Score: 193
Period size: 58 Copynumber: 2.1 Consensus size: 58
20424934 CGCATGCTCG
* * * * *
20424944 TTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGTAGTTCA
1 TTTTGTGGGTTGACGTAGGCATACCAAGTTCATCCCCAATCTAAGCATACGGAGTTCA
20425002 TTTTGTGGGTTGACGTAGGCATACCAAGTTCATCCCCAATCTAAGCATACGGAGTTCA
1 TTTTGTGGGTTGACGTAGGCATACCAAGTTCATCCCCAATCTAAGCATACGGAGTTCA
20425060 TTT
1 TTT
20425063 CTAGTCTAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (58 bp):
TTTTGTGGGTTGACGTAGGCATACCAAGTTCATCCCCAATCTAAGCATACGGAGTTCA
Found at i:20425823 original size:26 final size:26
Alignment explanation
Indices: 20425793--20425845 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20425783 GTTGACTTAG
20425793 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20425819 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20425845 G
1 G
20425846 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20432599 original size:26 final size:26
Alignment explanation
Indices: 20432549--20432601 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20432539 GTTGGCTTAG
* *
20432549 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGATCATTCCATATCTAA
20432575 GCATACGGAGATCATTCCCA-ATCTAA
1 GCATACGGAGATCATT-CCATATCTAA
20432601 G
1 G
20432602 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCATATCTAA
Found at i:20433750 original size:157 final size:156
Alignment explanation
Indices: 20433299--20433789 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 156
20433289 CCCAGTCTAA
* * * *** * *
20433299 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGTGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGAG-TAGCAGGATCGACA
* * * * *
20433364 ACACACAGAGGGGATTGGGCCAATCCCTGGCTTGTGCATTCTACCTCTCCGACCGGCTAAGCGCC
65 A-ACACAGAGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACC
* *
20433429 CGCATGC-CTGTTTCGTGGGTTGGCTTAG
129 CGCACGCTC-GTTTCATGGGTTGGCTTAG
* * * * * * * *
20433457 GCATAGGGAGTTCATT--TAATGTGTAAGCTCCAG-CCAGACCGAGGGTTGTGGCAGCGGGATTG
1 GCATACGGAGTTCATTCCCAA--TCTAAGAT-CAGACCAGACCGAGGGTTG-AGTAGCAGGATCG
* * * * * * * *
20433519 GC-AGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCAGACCGGCTCA
62 ACAAACAC--AGA-GGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAA
* *
20433583 GCACCCGCACGCTCATTTCATGGGTTGACTTAG
124 GCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
20433616 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTG-AGTAGCAGGATCGACA
* * *
20433681 AACACAG-GGGTGATCGGGCCCATCCCCGGCTTGCGCATTCTGCCTCTCCGTCCGGCTGAGCACC
65 AACACAGAGGG-GATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACC
*
20433745 CGCACGTTCGTTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
*
20433773 GCATACGGAGTTTATTC
1 GCATACGGAGTTCATTC
20433790 AATGTCTAAG
Statistics
Matches: 265, Mismatches: 55, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 7 0.03
157 88 0.33
158 48 0.18
159 115 0.43
160 5 0.02
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGAGTAGCAGGATCGACAA
ACACAGAGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:20434383 original size:171 final size:171
Alignment explanation
Indices: 20434058--20434372 Score: 400
Period size: 171 Copynumber: 1.8 Consensus size: 171
20434048 GTGGGACCGG
* * * * **
20434058 CAGCATGCAGAGGGGGATCGAGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGTTCAGC
1 CAGCATGCAGAGGGGGATCGAGCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCGACTCAGC
* *
20434123 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATATAAGATCGGAT
66 ACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATATAAGATCGGAC
*
20434188 CGAATCGAGCGTTGCAACAGCAAGACCAGCAGTAGGATCGA
131 CGAACCGAGCGTTGCAACAGCAAGACCAGCAGTAGGATCGA
* * * * * *
20434229 CAGCATGCA-AGAGGGGATCGGGCCGATCCCCAGCTTGGGCATTCTACCTCTCTGGCCGACTGAG
1 CAGCATGCAGAG-GGGGATCGAGCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCGACTCAG
* * * * * *
20434293 CACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATAC-GAAGTTTATTCCCAGTCTAATATTGG
65 CACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCCAATATAAGATCGG
*
20434357 ACCGAACCGAGGGTTG
129 ACCGAACCGAGCGTTG
20434373 TGGCAGCAAG
Statistics
Matches: 120, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
170 3 0.03
171 117 0.98
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (171 bp):
CAGCATGCAGAGGGGGATCGAGCCAATCCCCAGCTTGCGCATTATACCTCTCCGGCCGACTCAGC
ACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATATAAGATCGGAC
CGAACCGAGCGTTGCAACAGCAAGACCAGCAGTAGGATCGA
Found at i:20434536 original size:26 final size:26
Alignment explanation
Indices: 20434484--20434536 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20434474 GTTGGCTTAG
*
20434484 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
20434510 GCATATGGAGTTCATTCCCAT-TATAA
1 GCATACGGAGTTCATT-CCATGTATAA
20434536 G
1 G
20434537 ATAGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:20434881 original size:26 final size:26
Alignment explanation
Indices: 20434851--20434903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20434841 GTTGACTTAG
* *
20434851 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
*
20434877 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
20434903 G
1 G
20434904 ATCGATCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:20435222 original size:26 final size:26
Alignment explanation
Indices: 20435193--20435245 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20435183 GTTGACTTTT
*
20435193 GCATACGGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
*
20435219 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
20435245 G
1 G
20435246 ATCGAACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:20435243 original size:342 final size:353
Alignment explanation
Indices: 20434450--20435442 Score: 975
Period size: 354 Copynumber: 2.8 Consensus size: 353
20434440 CGATCGGTTG
* * *
20434450 AGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
1 AGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATA
** * * * * * * * * * *
20434515 TGGAGTTCATTCCCATTATAAGATAGGACC-GAGCCGAGGGTTGCAACAGTAGGACCAGCAGCAA
65 CAGAGTTCATTCACAGTCTAAGATCGAACCAGA-CCGAAGGTT------GTAGCAGCAGCAGTAG
* * *
20434579 GATCGGTAGCACGCAGGGGGGATCGAG-CTAATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGG
123 GATCGGTAGCACGCAGGGGGGACCGAGTC-GATCCTCGGCTTGCGCATTCTGCCTCTCCGAC-GA
* * * * ** * * *
20434643 TTGGGCACCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGT
186 CTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* *** *
20434708 ACCAGTTGGACCGAGGGTTGTGGCAGCAGGATCGACAGTGGGATCGACAGCATGCAGAGGGGGAC
251 CCCAGCCAGACCGAGGGTTGTGGCAGCAGGATC-AC----GGATCAACAGCAT-CAGAGGGGGAC
* *
20434773 CGGGCTGATCCCCAGCTTGCACATTATGCCTCTCTGGCCGACTA
310 CGGGCTGATCCCCAGCTTGCACATTATGCCACTCTAGCCGACTA
20434817 AGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATA
* *
20434882 CAGAGTTCATTCACAGTCTAAGATCG-ATCAGACTGAAGG-T-T-GC-G-A-CAGTAGGATCGGT
65 CAGAGTTCATTCACAGTCTAAGATCGAACCAGACCGAAGGTTGTAGCAGCAGCAGTAGGATCGGT
* * * * *
20434940 TGCACGCAGGGTGGACCGAGTCGATCCTCGGCTTGCACATTCTGCCTCTCTGATCGACTGAGCGC
130 AGCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGA-CGACTGAGCAC
*
20435005 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAAGCCCCAGCCA
194 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
*
20435070 GACCGA-GGTATGTGGCAGCAGGA-C-C-GA-CAACA-CAT-AGAGGGGGACCGGGGC-GATCTC
259 GACCGAGGGT-TGTGGCAGCAGGATCACGGATCAACAGCATCAGAGGGGGACC-GGGCTGATCCC
** *
20435127 TGGCTTGCACATTATGCCACT-TCAGCCGGCTCA
322 CAGCTTGCACATTATGCCACTCT-AGCCGACT-A
* * **
20435160 A-TGCCCGCACGCTCGTTTCATGGGTTGACTTTTGCATACGGAGTTCAAT-CCATGTCTAAGCAT
1 AGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC-ATCCCA-GTCTAAGCAT
* *
20435223 ACAGAGTTCATTCCCAGTCTAAGATCGAACCATACCGAAGGTTGCAGTAGCATGACCAGCAGTAG
64 ACAGAGTTCATTCACAGTCTAAGATCGAACCAGACCGAAGGTT---GTAGCA-G--CAGCAGTAG
* * * * * * *
20435288 GATCGATAGCACGCAGGGGGGACC-AGGTAGATCCCCGGCTTACGTATTCTGCCTCTCCGGCCAA
123 GATCGGTAGCACGCAGGGGGGACCGA-GTCGATCCTCGGCTTGCGCATTCTGCCTCTCC-GACGA
*
20435352 CTGAACACCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
186 CTGAGCA-CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
** *
20435417 CCCCAGCTGGACTGAGGGTTGTGGCA
250 CCCCAGCCAGACCGAGGGTTGTGGCA
20435443 AAGAGACAGG
Statistics
Matches: 529, Mismatches: 70, Indels: 65
0.80 0.11 0.10
Matches are distributed among these distances:
341 4 0.01
342 117 0.22
343 18 0.03
344 4 0.01
345 4 0.01
346 2 0.00
348 1 0.00
349 2 0.00
351 2 0.00
353 4 0.01
354 136 0.26
355 63 0.12
356 76 0.14
357 4 0.01
358 1 0.00
365 1 0.00
366 7 0.01
367 80 0.15
368 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (353 bp):
AGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATAC
AGAGTTCATTCACAGTCTAAGATCGAACCAGACCGAAGGTTGTAGCAGCAGCAGTAGGATCGGTA
GCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACGACTGAGCACCC
GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTGTGGCAGCAGGATCACGGATCAACAGCATCAGAGGGGGACCGGGCTGATCCCCAGC
TTGCACATTATGCCACTCTAGCCGACTA
Found at i:20435732 original size:158 final size:158
Alignment explanation
Indices: 20435281--20435732 Score: 424
Period size: 159 Copynumber: 2.8 Consensus size: 158
20435271 AGCATGACCA
* * * * * * * *
20435281 GCAGTAGGATCGATAGCACGCAGGGGGGACCAGGTAGATCCCCGGCTTACGTATTCTGCCTCTCC
1 GCAGAAGGATAGACAGCACGTAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
** * * * *
20435346 GGCCAACTGAACACCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
66 GATCGACTGAGCA-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* *
20435411 TCTAAGCCCCAGCTGGACTGAGGGTTGTG
130 TCTAAGCCCCAGCTGGACCGAGGGTTGCG
* * * *** *
20435440 GCA-AAGAGACAGGCAGCACGTAGAGAGGGATTGAGTCGATCCCCGGCTTGCGCATTATGCCTCT
1 GCAGAAG-GATAGACAGCACGTAG-GGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCT
* * ** * * * *
20435504 CCGATCGGCTCAGCACCCAAACGCTTGTTTTATGGGTTGACTTTGGCATACGGAGTTCATTCCCA
64 CCGATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
* **
20435569 -ATCTAAGATCC-GACTGGACCGAGGGTTGCG
128 TGTCTAAGCCCCAG-CTGGACCGAGGGTTGCG
* * * * *
20435599 GCAGCAGGATTGACAGCACGTAGGGGGGACCAAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCT
1 GCAGAAGGATAGACAGCACGTAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * * ** *
20435664 GATCGACTGAGCACCCGCACGCTCATTTCGTTGGTTGGCTTAGGCGTACAAAATTCATTCCATGT
66 GATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
20435729 CTAA
131 CTAA
20435733 CCATACAGAG
Statistics
Matches: 225, Mismatches: 62, Indels: 13
0.75 0.21 0.04
Matches are distributed among these distances:
157 3 0.01
158 86 0.38
159 91 0.40
160 45 0.20
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCAGAAGGATAGACAGCACGTAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
GATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGCTGGACCGAGGGTTGCG
Found at i:20436243 original size:159 final size:158
Alignment explanation
Indices: 20435975--20436280 Score: 380
Period size: 159 Copynumber: 1.9 Consensus size: 158
20435965 AAAGATCAAA
* * * **
20435975 CCAGACTGAGGGTTGTGGTTGTAGGATCAGCAAGATACAGGGGGGATCGGGCCGATCCCCGGCTT
1 CCAGACTGAGGGTTGTGGTAGTAGGATCAGCAACATACAGAGGGGATCAAGCCGATCCCCGGCTT
* * *
20436040 GCGCATTCTGCCTCTCCAACCGACTGAGCGCCTGTACGCCCGTTTCACGAGTTGGCTTAGGCAGA
66 GCGCATTCTACCTCTCCAACCGACTGAGCACCCGTACGCCCGTTTCACGAGTTGGCTTAGGCAGA
*
20436105 GGGAGTTCATTCCATGTTGAAGCCCCAG
131 CGGAGTTCATTCCATGTTGAAGCCCCAG
* * * *
20436133 CCAGACTGAGGGTTGTGGTAGTGGGAT-TGACAACATGCAGAAGGGGATCAAGCCGATCCCTGGC
1 CCAGACTGAGGGTTGTGGTAGTAGGATCAG-CAACATACAG-AGGGGATCAAGCCGATCCCCGGC
* ** * * *** *
20436197 TTGCGTATTCTACCTCTCTGACCGACTGAGCACCCGTATGCTCGTTTTGTGGGTTGGCTTAGGCA
64 TTGCGCATTCTACCTCTCCAACCGACTGAGCACCCGTACGCCCGTTTCACGAGTTGGCTTAGGCA
*
20436262 TACGGAGTTCATTCCATGT
129 GACGGAGTTCATTCCATGT
20436281 CAAGCATACG
Statistics
Matches: 123, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
157 1 0.01
158 33 0.27
159 89 0.72
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
CCAGACTGAGGGTTGTGGTAGTAGGATCAGCAACATACAGAGGGGATCAAGCCGATCCCCGGCTT
GCGCATTCTACCTCTCCAACCGACTGAGCACCCGTACGCCCGTTTCACGAGTTGGCTTAGGCAGA
CGGAGTTCATTCCATGTTGAAGCCCCAG
Found at i:20436293 original size:25 final size:25
Alignment explanation
Indices: 20436259--20436326 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
20436249 GTTGGCTTAG
20436259 GCATACGGAGTTCATTCCATGTCAA
1 GCATACGGAGTTCATTCCATGTCAA
20436284 GCATACGGAGTTCATTCCATGTCAA
1 GCATACGGAGTTCATTCCATGTCAA
* *
20436309 GCATATGGAGATCATTCC
1 GCATACGGAGTTCATTCC
20436327 CAGTCTAAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCATGTCAA
Found at i:20437035 original size:26 final size:26
Alignment explanation
Indices: 20437005--20437057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20436995 GTTGACTTAG
*
20437005 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20437031 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20437057 G
1 G
20437058 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20437485 original size:159 final size:158
Alignment explanation
Indices: 20437031--20437523 Score: 476
Period size: 159 Copynumber: 3.1 Consensus size: 158
20437021 CCCAGTCTAA
* * * *
20437031 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTACGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAAGATCGACA
* * * ** * * * * * *
20437096 GCACGTAAG-GGGGACCAGACTAATACCCAGTTTGTGCATTCTGCTTCTCTAGCCGACTGAGCAC
66 GCACGCAAGAGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCAG-CGGCTGAGCGC
* *
20437160 CCGCACTCCCCATTTCGTGGGTTGGCTTAG
130 CCGCAC-GCTCATTTCGTGGGTTGGCTTAG
* * ** * **
20437190 GCATAGGGTGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGGGGTAGC-AGCA-CT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTACGGTAGCAAG-ATC-
* * * * * *
20437251 GATAGCACGC-AGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGCTAGCTC
62 GACAGCACGCAAGA-GGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCAGC-GGCTG
* * * **
20437315 AGCGCCTGCACGCTCATTCCGTGGGATGAATTAG
125 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
**
20437349 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTACGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAAGATCGACA
* * * *
20437414 GCACGCAAGAAGGGACCGGGCCGATCCCCCGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGC
66 GCACGCAAGAGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCAG-CGGCTGAGCGC
* *
20437479 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
20437508 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
20437524 ACATATCTAA
Statistics
Matches: 261, Mismatches: 60, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
158 8 0.03
159 197 0.75
160 56 0.21
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAAGATCGACA
GCACGCAAGAGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCAGCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20437752 original size:26 final size:26
Alignment explanation
Indices: 20437716--20437768 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20437706 GTTGACTTAG
20437716 GCATACCGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
* *
20437742 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
20437768 G
1 G
20437769 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:20438089 original size:26 final size:26
Alignment explanation
Indices: 20438059--20438109 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20438049 TGGCTTAGGC
*
20438059 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGAAGTTCATTCCCA-GTCTAAGT
20438085 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
20438110 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:20438338 original size:550 final size:547
Alignment explanation
Indices: 20437254--20438662 Score: 1649
Period size: 550 Copynumber: 2.6 Consensus size: 547
20437244 CAGCACTGAT
*
20437254 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGCT-AGCTCAGC
1 AGCACGCAG-GGGGGATCGGGCCGATCCCC-GCTTGCGCATTATGCCTCTCCAGCTGA-CTCAGC
* * * * * * * * *
20437318 GCCTGCACGCTCATTCCGTGGGATGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAT
63 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAACATCGGAT
** * *
20437383 CAGACCGAGGGTTACGGTAGCAAGATCGACAGCACGCAAGAAGGGACCGGGCCGATCCCCCGCTT
128 CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAAG-AGGGACCGGG-CGATCCCCAGCTT
* * **
20437448 GTGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATA
191 GTGCATTCTGCCTCTCCGGTCGGCTGAG-ACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATA
* * * *
20437513 CGGAGTTCATTACATATCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGATG
255 CGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
** * * * * *
20437578 GTTACGGTAGCAGGACTAGTAGCAGGATCGGTAGCACGCAGGAGGGACCGGGCCAATCCCTGGCT
320 GTTACGACAGCAGGACCAGTAGCAGGATCAGCAGCACGCAGGAGGGACCGGGCCAATCCCCGACT
** * * * *
20437643 TGTGCATTATGCCTCCCCGGCCTACCTCTCGATCGATTGAGCGCCCGTACGCTCGTTTCGTGGGT
385 TACGCATTATACCTCCCCGGCCGACCTCTCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
20437708 TGACTTAGGCATACCGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
450 TGACTTAGGCATACCGAGTTAATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * **
20437773 GATCGGACCGAGGGTTGTGACAGCAGGATCGAC
515 AACCAGACCGAGGGTTACGACAGCAGGATCGAC
* * * * *
20437806 AGCACGCAGGGGGGACCAGGCCGATCCCCGCTTGCACATTATGCCTCTCCAACTGACTCAACGCC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTATGCCTCTCCAGCTGACTCAGCGCC
*
20437871 CGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAACATCGGATCAG
66 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAACATCGGATCAG
* * * * **
20437936 ACCAAGGGTTGTGGCAGCAGGATCGACAGCACGTAAGAGGGACCGGGTCGGTCCCCAGCTTGCAC
131 ACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAAGAGGGACCGGG-CGATCCCCAGCTTGTGC
* * *
20438001 ATTCTACCTCTCCGATCGGCTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGA
195 ATTCTGCCTCTCCGGTCGGCTGAG-ACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* * *
20438066 GTTCATTCCATGTCTAAGTATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTG
259 GTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA
* * * *
20438131 CGACAGCAGGACCAGTAGCAGGATCAGCAGCATGCAGGGGGGATCGGGTCAATCCCCGACTTACG
324 CGACAGCAGGACCAGTAGCAGGATCAGCAGCACGCAGGAGGGACCGGGCCAATCCCCGACTTACG
* * * * * * * *
20438196 TATTCTACCTCTCTGGCCGGCCTCTCCGATCGGCTGAGCGCCTGCACGCTTGTTTCGTGGGTTGA
389 CATTATACCTCCCCGGCCGACCTCT-CGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
20438261 CTTAGGCATACGGAGTTAATCCTCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAAC
453 CTTAGGCATACCGAGTTAATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
* *
20438326 CAGACTGAGGGTTACGACAGCAGGATCGGC
518 CAGACCGAGGGTTACGACAGCAGGATCGAC
* * * * * ** * *
20438356 AGCACGTAAGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGCCGATCCC-CGCTTGCGCATTATGCCTCTCCAGCTGACTCAGCGC
* * * ** *
20438421 CCGCACGC-CTGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATT-CC-ATGTCTAAGCCCCAG
65 CCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT-T-TAA-CATCGG
* * * * * * * * ***
20438483 -TCGGATCGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGGACCGAGCTAATCCTTGGC
126 ATCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCA-AGAGGGACCGGGC-GATCCCCAGC
* * * * *
20438547 TTGTGCATTCTGCCTCTCTGGCCGACTGAGAGCCTGCTTGCTCGTTTCATGGGTTGGCTTAGGCA
189 TTGTGCATTCTGCCTCTCCGGTCGGCTGAGA-CCCGCATGCTCGTTTCATGGGTTGGCTTAGGCA
*
20438612 TACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
253 TACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
20438663 GTTTAAGCCA
Statistics
Matches: 720, Mismatches: 127, Indels: 20
0.83 0.15 0.02
Matches are distributed among these distances:
549 210 0.29
550 261 0.36
551 120 0.17
552 129 0.18
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (547 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTATGCCTCTCCAGCTGACTCAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAACATCGGATCAG
ACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAAGAGGGACCGGGCGATCCCCAGCTTGTGCA
TTCTGCCTCTCCGGTCGGCTGAGACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG
ACAGCAGGACCAGTAGCAGGATCAGCAGCACGCAGGAGGGACCGGGCCAATCCCCGACTTACGCA
TTATACCTCCCCGGCCGACCTCTCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACCGAGTTAATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG
ACCGAGGGTTACGACAGCAGGATCGAC
Done.