Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 192 of 402
Found at i:20438639 original size:26 final size:26
Alignment explanation
Indices: 20438609--20438661 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20438599 GTTGGCTTAG
20438609 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20438635 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20438661 G
1 G
20438662 AGTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20439034 original size:26 final size:26
Alignment explanation
Indices: 20439004--20439056 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20438994 GTTGACTTAG
*
20439004 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20439030 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20439056 G
1 G
20439057 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20439553 original size:26 final size:26
Alignment explanation
Indices: 20439517--20439569 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20439507 GTTGACTTAG
*
20439517 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
20439543 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
20439569 G
1 G
20439570 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:20439813 original size:512 final size:514
Alignment explanation
Indices: 20438991--20440106 Score: 1243
Period size: 512 Copynumber: 2.1 Consensus size: 514
20438981 ACTTTTTTCA
* *
20438991 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCACAGTCTAA
**** * ** **
20439056 GATCAGACCGGACTGAAGGTTGTGGTAGTAGGATCGGTAGCACGCAAGGGGGATCAGGCCGGTCC
66 GATCAGACCGGACTGAAGGTTGCAACAGCAGGATCGACAGCACGCAAGGGGGATCAGGCCAATCC
* * **
20439121 CCGACTTACGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCATGCCTGTTTCATGGGTTCGCTT
131 CCGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCATTTCATGGGTTCGCTT
* * *
20439186 AGGCATAGGGAATTCGTTCAATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGATCGG
196 AGGCATAGGGAATTCATTCAATGTCTAAGCCCCAGTCGGACCGAGGGTTCTGGCAACGGGACCGG
* * ** *
20439251 CAGCATGCAGAGGGGGACCGGGCAAATCCCTGGCCTGCGCATTATGCCTCTCCAGCAGGCTCAGC
261 CAGCACGCAGAAGGGGACCAAGCAAATCCCTGGCCTGCGCATTATGCCTCTCCAGCAGACTCAGC
* * * **
20439316 GCTCGAATGCTCATTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCA-GTCTAAGATCG-
326 GCTCGAACGCTCATTTCATGGGTTGACCTAGGCATACGA-AGATCATT-CCATGTCTAAGCCCGA
* * * **
20439378 GATCGGA-TCGAGGGTTGCGGTAGCAGGACC-AGTAGTAGGATCGGTAGCACGCAGAG-GGGATC
389 G-TCGGACT-GAGGGTTGCGGCAGCAGGACCGA-CAGCAGGATCGACAGCACGCAGAGAGGGATC
* * *
20439440 GGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCACCCACACGCTCGTTTTG
451 GGGCT-GATCCCCGGATTGCACATTATGCCTCTTCGGCCAGCTGAGCACCCACACGCTCGTTTTG
*
20439504 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCACAGTCTAA
** * * * *
20439569 GATC-GAATTGGATCT-AGGGTTGCAACAGCAGGATCGACAGCACGTAGGGGGGATC-GGCTAAT
66 GATCAG-ACCGGA-CTGAAGGTTGCAACAGCAGGATCGACAGCACGCAAGGGGGATCAGGCCAAT
* * * * *
20439631 CCTCGGCTTATGCATTCTGCCTCTCC-AGCTGGTTGAGCGCCCGCACGCCCATTTCATGGGTTGG
129 CCCCGACTTACGCATTCTGCCTCTCCGA-CTGGCTGAGCGCCCGCACGCCCATTTCATGGGTTCG
* *
20439695 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTCTGG-AAGCGGGA
193 CTTAGGCATAGGGAATTCATTCAATGTCTAAGCCCCAGTCGGACCGAGGGTTCTGGCAA-CGGGA
** * * *
20439759 CCGGCAGCACGCAGAAGGGGACCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCGACT
257 CCGGCAGCACGCAGAAGGGGACCAAGCAAATCCCTGGCCTGCGCATTATGCCTCTCCAGCAGACT
* * * ** *
20439824 GAGTGCTCGCACGCTCATTTTGTGGGTTGGCCTAGGCATACGAAGATCATTCCATGTCTAAGCCC
322 CAGCGCTCGAACGCTCATTTCATGGGTTGACCTAGGCATACGAAGATCATTCCATGTCTAAGCCC
* * * *
20439889 TAGTCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGTAGAGAGGGATCG
387 GAGTCGGACTGAGGGTTGCGGCAGCAGGACCGACAGCAGGATCGACAGCACGCAGAGAGGGATCG
* *
20439954 GGCTGATCCCCGGATTGCACATTATGCCTCTTCGGTTGGCC-TCTTCGATCGGTTAAAACACCCG
452 GGCTGATCCCCGGATTGCACATTATGCCTCTTC----GGCCAGC-T-GA---G------CACCCA
* *
20440018 CATGCTCGTTTCG
502 CACGCTCGTTTTG
* * * *
20440031 TGGGTTGACTTA-GCATACGGAGTTCATCCCCAGTTTAAGCATACCAAGTTCATTCCCAGTGTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCACAGTCTAA
*
20440095 TATCAGACCGGA
66 GATCAGACCGGA
20440107 TCGAGGTTGT
Statistics
Matches: 499, Mismatches: 77, Indels: 41
0.81 0.12 0.07
Matches are distributed among these distances:
511 6 0.01
512 259 0.52
513 139 0.28
514 3 0.01
516 1 0.00
517 5 0.01
518 2 0.00
521 1 0.00
526 54 0.11
527 29 0.06
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (514 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCACAGTCTAA
GATCAGACCGGACTGAAGGTTGCAACAGCAGGATCGACAGCACGCAAGGGGGATCAGGCCAATCC
CCGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCATTTCATGGGTTCGCTT
AGGCATAGGGAATTCATTCAATGTCTAAGCCCCAGTCGGACCGAGGGTTCTGGCAACGGGACCGG
CAGCACGCAGAAGGGGACCAAGCAAATCCCTGGCCTGCGCATTATGCCTCTCCAGCAGACTCAGC
GCTCGAACGCTCATTTCATGGGTTGACCTAGGCATACGAAGATCATTCCATGTCTAAGCCCGAGT
CGGACTGAGGGTTGCGGCAGCAGGACCGACAGCAGGATCGACAGCACGCAGAGAGGGATCGGGCT
GATCCCCGGATTGCACATTATGCCTCTTCGGCCAGCTGAGCACCCACACGCTCGTTTTG
Found at i:20441958 original size:26 final size:26
Alignment explanation
Indices: 20441907--20441959 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20441897 CCGCTTTGAT
*
20441907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20441933 CTTAGACTGAGG-ATTAACTTCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
20441959 C
1 C
20441960 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20442154 original size:26 final size:26
Alignment explanation
Indices: 20442116--20442166 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20442106 ATGGTCCGAT
*
20442116 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
20442142 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
20442167 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:20442486 original size:26 final size:26
Alignment explanation
Indices: 20442457--20442509 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20442447 CCGATCCGAT
20442457 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20442483 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20442509 C
1 C
20442510 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20442984 original size:159 final size:158
Alignment explanation
Indices: 20442703--20443194 Score: 490
Period size: 159 Copynumber: 3.1 Consensus size: 158
20442693 TTAGATATGT
* * * * *
20442703 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCG-CTGGAGAG
* * * *
20442768 GCAGAATGCACAAGCGGGGGATCGGCCCGGT-CCCTTCTTGCGTGCTATCGATCCTGCTACCGTA
65 GCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTC-TGCGTGCTATCGATCCTGCTACCGCA
20442832 ACCCTCGGTCTGATCCAATCTTAGACTGGG
129 ACCCTCGGTCTGATCCAATCTTAGACTGGG
* ** * * *
20442862 AATGAACTCTGTATGCCTAATTCATCCCACGGAATGAGCGTGCAGGCGCTGAGCCAGCTGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCC-GCTGGAGAG
* * * *
20442927 GCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATC-AGTGCTGCTACCCCA
65 GCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGA-TCCTGCTACCGCA
* ****
20442991 ACCCTCGGTCTG-GCTGGGGCTTAGACAT-GG
129 ACCCTCGGTCTGATC-CAATCTTAGAC-TGGG
* * * * * ** * * *
20443021 AATGAACACCCTATGCCTAAGCCAACCCATGAAATGGGAGTGCAGATGCTCAGTCGGTCGGAGAA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGCT-GGAGAG
* * * * * *
20443086 ACAAAATGCACAAACCGGGGATCAGTCCGGTCCCCCT-TGCATGCTGTCGATCCTGCTACCGCAA
65 GCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCGCAA
* * *
20443150 CCCTTGGTCCGATCTAATCTTAGACTGGG
130 CCCTCGGTCTGATCCAATCTTAGACTGGG
*
20443179 AATGAACTCTGTATGC
1 AATGAACTCCGTATGC
20443195 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 59, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 56 0.21
159 201 0.76
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGCTGGAGAGG
CAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCGCAAC
CCTCGGTCTGATCCAATCTTAGACTGGG
Found at i:20443204 original size:26 final size:26
Alignment explanation
Indices: 20443168--20443220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20443158 CCGATCTAAT
*
20443168 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20443194 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20443220 C
1 C
20443221 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20444460 original size:26 final size:26
Alignment explanation
Indices: 20444431--20444483 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20444421 CCGGTCTGAT
20444431 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
20444457 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20444483 C
1 C
20444484 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20444910 original size:159 final size:158
Alignment explanation
Indices: 20444456--20444910 Score: 468
Period size: 159 Copynumber: 2.9 Consensus size: 158
20444446 AACTCCGTAT
* *
20444456 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
20444521 TCGGTCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCTTGGTCCCCCCCTACGTGCTGTCAATC
66 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGAT-CCCCCCTACGTGCTGTCGATC
** * *
20444586 CTACTACCGCAACCCTCAGTCCAGTCTGA
130 CTGTTGCCACAACCCTCAGTCCAGTCTGA
* * * * *
20444615 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * * * * *
20444679 GCCGATCGGAGAGGCATAATGCGCAAGCCGAGCATCGACTCAATCCCTCTCTACGTGCTGTCGGT
65 GTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCC-CCCTACGTGCTGTCGAT
* *
20444744 CGC-GTTGCCACAACCCTCAGTCCGGT-TGGG
129 C-CTGTTGCCACAACCCTCAGTCCAGTCT-GA
* * * *
20444774 GCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGGCGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGC-GGGTGCTC
* * * * * * *
20444838 AGTTGGCCGGAGAGGCAGAATACGTAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGAT
64 AGTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGAT
20444903 CCTGTTGC
129 CCTGTTGC
20444911 TGGTCATGCT
Statistics
Matches: 234, Mismatches: 54, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
158 7 0.03
159 184 0.79
160 43 0.18
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCC
TGTTGCCACAACCCTCAGTCCAGTCTGA
Found at i:20444984 original size:26 final size:26
Alignment explanation
Indices: 20444946--20444998 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20444936 ACGGTTCGAT
20444946 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20444972 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20444998 C
1 C
20444999 AAAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20446396 original size:26 final size:26
Alignment explanation
Indices: 20446367--20446419 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20446357 CCGGTCCGAT
20446367 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20446393 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20446419 C
1 C
20446420 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20446554 original size:184 final size:184
Alignment explanation
Indices: 20446238--20446577 Score: 439
Period size: 184 Copynumber: 1.8 Consensus size: 184
20446228 CACTCAGCCA
* **
20446238 AAGCCAACCCATGAAATGGGGATGCGGGTGCTCAGCCAGCCGGAGAGGGAGAATGCACAAGCCAG
1 AAGCCAACCCATGAAACGACGATGCGGGTGCTCAGCCAGCCGGAGAGGGAGAATGCACAAGCCAG
* * * *
20446303 GGATCAACCCTATCCCCCCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGGCCGGTCCGATC
66 GGATCAACCCGATCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGGGCCGATCCGATC
20446368 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
131 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
* * * * * *
20446422 AAGCCAACCCATGAAACGAACG-TGCGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCG
1 AAGCCAACCCATGAAACG-ACGATGCGGGTGCTCAGCCAGCCGGAGAGGGAGAATGCACAAGCCA
*** * * ** * * * *
20446486 GGGATGGGCCCGGTCGCCCCTGTGTGCTATCGATCCTGCTACTGCAACCCTCGGTCCGATCTGAT
65 GGGATCAACCCGATCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGGGCCGATCCGAT
*
20446551 CTTAGATTGGGAATGAACTCCGTATGC
130 CTTAGACTGGGAATGAACTCCGTATGC
20446578 CTAAGTCAAC
Statistics
Matches: 130, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
184 129 0.99
185 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (184 bp):
AAGCCAACCCATGAAACGACGATGCGGGTGCTCAGCCAGCCGGAGAGGGAGAATGCACAAGCCAG
GGATCAACCCGATCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGGGCCGATCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
Found at i:20446747 original size:159 final size:158
Alignment explanation
Indices: 20446392--20446894 Score: 557
Period size: 158 Copynumber: 3.2 Consensus size: 158
20446382 AACTCCGTAT
* *
20446392 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGTGCTCAG
* * * **
20446457 TCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATGGGCCCGGTCGCCC-CTGTGTGCTATCGATC
65 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGATC
* * *
20446521 CTGCTACTGCAACCCTCGGTCCGATCTGA
130 CTGCTGCCGCAACCCTCGGTCCGAGCTGA
* * * *
20446550 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGTGCTCA
* * * * * * *
20446614 GCCGGTCTGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAAT
64 GCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGAT
* * *
20446679 CCTGCTGCCACAACCCTCGGTCTG-GCTGGG
129 CCTGCTGCCGCAACCCTCGGTCCGAGCT-GA
* * * * * *
20446709 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGA-GCGTGCGGGTGCTCAG
* * ** * *
20446774 CCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATTGGCCCAAT-CCCCTCTGTGTGTTGGCGATC
65 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGATC
* *
20446838 CTGCTGTCGCAACCCTCGGTCCGATCTGA
130 CTGCTGCCGCAACCCTCGGTCCGAGCTGA
* *
20446867 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
20446895 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 56, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 159 0.56
159 120 0.43
160 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAGCGTGCGGGTGCTCAGC
CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGAGCTGA
Found at i:20447629 original size:26 final size:26
Alignment explanation
Indices: 20447591--20447643 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20447581 GGCTCAAACT
*
20447591 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20447617 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20447643 C
1 C
20447644 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20448169 original size:26 final size:26
Alignment explanation
Indices: 20448140--20448190 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20448130 CCGGTCCGAT
20448140 CTTAGAC-TGGGAATGAACTCCGTATA
1 CTTAGACAT-GGAATGAACTCCGTATA
20448166 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
20448191 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:20454437 original size:26 final size:26
Alignment explanation
Indices: 20454386--20454438 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20454376 TCGGTCCGAT
*
20454386 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20454412 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
20454438 C
1 C
20454439 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20455186 original size:26 final size:26
Alignment explanation
Indices: 20455157--20455209 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20455147 CCGATCTGAT
20455157 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
* ** *
20455183 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
20455209 C
1 C
20455210 CTACGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:20455256 original size:58 final size:58
Alignment explanation
Indices: 20455166--20455280 Score: 203
Period size: 58 Copynumber: 2.0 Consensus size: 58
20455156 TCTTAGACTA
* * *
20455166 GAAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTACGTCAACCCAT
1 GAAATGAACTACATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAT
20455224 GAAATGAACTACATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCA
1 GAAATGAACTACATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCA
20455281 CAAAACGAGC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (58 bp):
GAAATGAACTACATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAT
Found at i:20455568 original size:171 final size:171
Alignment explanation
Indices: 20455263--20455851 Score: 456
Period size: 171 Copynumber: 3.5 Consensus size: 171
20455253 ATGAACTTCG
* * * * *
20455263 TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGAACAGGCATAATGCGT
1 TATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGCCGAAGAGGCAGAATGCGC
* * * *** * ** *
20455328 AAGCTGGGGATCAGCCCGGTCCCCTTTTACTTGCTACCGATCCCGCTGCCGGTCCTACTGCCACA
66 AAGCCGAGGATCGGCCCGGTCCCCCCCTACGTGCTGTCGATCCCGCTGCCGGACCTACTGCCACA
**
20455393 ACCCTCGGTCC-GACTGGGGCTTAGACAT-GGAACAAACTCCA
131 ACCCTCGGTCCGGACT-AAGCTTAGA-ATGGGAACAAACTCCA
** ** *
20455434 TATGCCTAAGTCAACCCATGAAACGAGCGTACATGTGCTCAACCGGCCGAAGAGGCAGAATGCGC
1 TATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGCCGAAGAGGCAGAATGCGC
* * * * *
20455499 AAGCCGAGGATCGGCCCGGTCCCCCCCTACGTGCTGTCGATCCTGCTGCTGGACCTGCTGGCGCA
66 AAGCCGAGGATCGGCCCGGTCCCCCCCTACGTGCTGTCGATCCCGCTGCCGGACCTACTGCCACA
* * * * **
20455564 ACCCTTGGTCCGGTCTAATCTTAGATTGGGAATGAACTCCA
131 ACCCTCGGTCCGGACTAAGCTTAGAATGGGAACAAACTCCA
* ** * ** * * * *
20455605 TATGCCTAAGCCAACCCACAAAATAAGCGTACGGGCACTCAGTCGGTCGGAGAGGTAGAACGCGC
1 TATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGCCGAAGAGGCAGAATGCGC
* * * *
20455670 AAGCCGAGGATTGGCTCGAT-CCCCCCTACGTGCTGTCGAT----CT--C-G--CTA---CCATA
66 AAGCCGAGGATCGGCCCGGTCCCCCCCTACGTGCTGTCGATCCCGCTGCCGGACCTACTGCCACA
* * * * ** *
20455722 ACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
131 ACCCTCGGTCCGGACTAAGCTTAGAATGGGAACAAACTCCA
* * * * *
20455763 TATTCCTAAGTCAACCCACGAAAA-GAGCGTGCGGGCGCT-AAGCCAGCCGGAGAGGCATAATGC
1 TATGCCTAAGTCAACCCAC-AAAACGAGCGTACGGGCGCTCAA-CCGGCCGAAGAGGCAGAATGC
* * * *
20455826 ACAAGTCGGGGATCGGCCCAGTCCCC
64 GCAAGCCGAGGATCGGCCCGGTCCCC
20455852 TCGACGTATT
Statistics
Matches: 334, Mismatches: 79, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 98 0.29
159 7 0.02
161 2 0.01
163 1 0.00
166 2 0.01
170 21 0.06
171 199 0.60
172 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (171 bp):
TATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGCCGAAGAGGCAGAATGCGC
AAGCCGAGGATCGGCCCGGTCCCCCCCTACGTGCTGTCGATCCCGCTGCCGGACCTACTGCCACA
ACCCTCGGTCCGGACTAAGCTTAGAATGGGAACAAACTCCA
Found at i:20455851 original size:158 final size:157
Alignment explanation
Indices: 20455562--20456234 Score: 482
Period size: 158 Copynumber: 4.3 Consensus size: 157
20455552 CCTGCTGGCG
* ** *
20455562 CAACCCTTGGTCCGGTCTAATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCCAC-AA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGCCAACCCACGAA
* * * ** * * * * * * *
20455626 AATAAGCGTACGGGCACTCAGTCGGTCGGAGAGGTAGAACGCGCAAGCCGAGGATTGGCTC-GAT
65 AA-GAGCGTGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAG-T
*
20455690 CCCCCCTACGTGCTGTCGATCTCGCTACCA
128 CCCCCCTACGTGCTGCCGATCTCGCTACCA
* * * *
20455720 TAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGCCAACCCACGAA
* * *
20455785 AAGAGCGTGCGGGCGCT-AAGCCAGCCGGAGAGGCATAATGCACAAGTCGGGGATCGGCCCAGTC
65 AAGAGCGTGCGGGCGCTCAA-CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTC
* * * *
20455849 CCCTCGACGT-AT---TATCT-G---CCA
129 CCCCCTACGTGCTGCCGATCTCGCTACCA
* * ** *
20455870 CAACCCTCGGTCCAG-CTGGGGCTTAGACAT-GGAATGAACTCTCTATGCCTAAGCCAACCTACG
1 CAACCCTCGGTCCGGTC-CGATCTTAGAC-TGGGAATGAACTC-CTATGCCTAAGCCAACCCACG
* * ** * * * * * *
20455933 AAATGGGCGTGCGGATGCTCAACCAACCAGAGAGGTAGAATGCGCAAGCTGGGGATCGACCCAAT
63 AAAAGAGCGTGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGT
* * * *
20455998 CCCCCTCTGA-GTGCGGCCGATCCCACTGCCA
128 CCCCC-CT-ACGTGCTGCCGATCTCGCTACCA
* * * ** *
20456029 TAACCCTCGATCC--ACCTGGGGCTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCAC
1 CAACCCTCGGTCCGGTCC--GATCTTAGAC-TGGGAATGAACT-CCTATGCCTAAGCCAACCCAC
* * * * * * * * *
20456091 GAAATGGGCATGCGGGTGCTCAACCGGCCTGAGAGGCAAAATGCGCAAGCCGGGGATCGGCACGG
62 GAAAAGAGCGTGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAG
* *
20456156 TCCCCCCTGCGTGCAGCCGATC-CTGCTACCA
127 TCCCCCCTACGTGCTGCCGATCTC-GCTACCA
* *
20456187 CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC-TATGC
20456235 TTAGACCGGG
Statistics
Matches: 407, Mismatches: 81, Indels: 54
0.75 0.15 0.10
Matches are distributed among these distances:
149 1 0.00
150 104 0.26
151 7 0.02
152 1 0.00
153 1 0.00
154 4 0.01
155 3 0.01
157 6 0.01
158 159 0.39
159 118 0.29
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (157 bp):
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTATGCCTAAGCCAACCCACGAAA
AGAGCGTGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCC
CCCTACGTGCTGCCGATCTCGCTACCA
Found at i:20455928 original size:150 final size:152
Alignment explanation
Indices: 20455741--20456160 Score: 431
Period size: 159 Copynumber: 2.7 Consensus size: 152
20455731 CCGGTCCAAT
* * * * *
20455741 CTTAGAC-TGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCT-AA
1 CTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAA
* * * * *
20455804 GCCAGCCGGAGAGGCATAATGCACAAGTCGGGGATCGGCCCAGTCCCCTC-GA-C-G-TAT-TAT
64 -CCAGCCAGAGAGGCAAAATGCGCAAG-CGGGGATCGGCCCAGTCCCCTCTGAGCGGCGATCCA-
* *
20455864 CTGCCACAACCCTCGGTCCAGCTGGGG
126 CTGCCACAACCCTCGATCCACCTGGGG
* *
20455891 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTACGAAATGGGCGTGCGGATGCTCAAC
1 CTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAAC
* * * * *
20455956 CAACCAGAGAGGTAGAATGCGCAAGCTGGGGATCGACCCAATCCCCCTCTGAGTGCGGCCGATCC
65 CAGCCAGAGAGGCAAAATGCGCAAGC-GGGGATCGGCCCAGT-CCCCTCTGA--GCGG-CGAT-C
*
20456021 CACTGCCATAACCCTCGATCCACCTGGGG
124 CACTGCCACAACCCTCGATCCACCTGGGG
* *
20456050 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAAC
* * * *
20456115 CGGCCTGAGAGGCAAAATGCGCAAGCCGGGGATCGGCACGGTCCCC
65 CAGCCAGAGAGGCAAAATGCGCAAG-CGGGGATCGGCCCAGTCCCC
20456161 CCTGCGTGCA
Statistics
Matches: 222, Mismatches: 32, Indels: 24
0.80 0.12 0.09
Matches are distributed among these distances:
149 1 0.00
150 84 0.38
151 10 0.05
152 2 0.01
155 1 0.00
156 1 0.00
158 6 0.03
159 114 0.51
160 3 0.01
ACGTcount: A:0.26, C:0.31, G:0.27, T:0.17
Consensus pattern (152 bp):
CTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAACC
AGCCAGAGAGGCAAAATGCGCAAGCGGGGATCGGCCCAGTCCCCTCTGAGCGGCGATCCACTGCC
ACAACCCTCGATCCACCTGGGG
Found at i:20456075 original size:159 final size:158
Alignment explanation
Indices: 20455864--20456199 Score: 456
Period size: 159 Copynumber: 2.1 Consensus size: 158
20455854 GACGTATTAT
* * * *
20455864 CTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCACCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
* * * * * *
20455929 TACGAAATGGGCGTGCGGATGCTCAACCAACCAGAGAGGTAGAATGCGCAAGCTGGGGATCGACC
66 CACGAAATGGGCATGCGGATGCTCAACCAACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACA
*
20455994 CAATCCCCCTCTGAGTGCGGCCGATCCCA
131 CAATCCCCC-CTGAGTGCAGCCGATCCCA
*
20456023 CTGCCATAACCCTCGATCCACCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCACCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
* ** * *
20456088 CACGAAATGGGCATGCGGGTGCTCAACCGGCCTGAGAGGCAAAATGCGCAAGCCGGGGATCGGCA
66 CACGAAATGGGCATGCGGATGCTCAACCAACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACA
** * **
20456153 CGGTCCCCCCTGCGTGCAGCCGATCCTG
131 CAATCCCCCCTGAGTGCAGCCGATCCCA
*
20456181 CTACCACAACCCTCGATCC
1 CTGCCACAACCCTCGATCC
20456200 GATCCGATCT
Statistics
Matches: 153, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
158 32 0.21
159 121 0.79
ACGTcount: A:0.24, C:0.34, G:0.26, T:0.16
Consensus pattern (158 bp):
CTGCCACAACCCTCGATCCACCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
CACGAAATGGGCATGCGGATGCTCAACCAACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACA
CAATCCCCCCTGAGTGCAGCCGATCCCA
Found at i:20457631 original size:26 final size:26
Alignment explanation
Indices: 20457602--20457654 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20457592 ACAGTCCGAT
20457602 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20457628 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20457654 C
1 C
20457655 CTAGGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20457769 original size:343 final size:343
Alignment explanation
Indices: 20457285--20458587 Score: 999
Period size: 343 Copynumber: 3.7 Consensus size: 343
20457275 TCAATCCGAT
* * * * *
20457285 CTTAGACTGGGAATGAACTCCGTTTGCATAAGTCAACCCATAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGC
** * * *
20457350 CGGTCGAAGAGGCATAATGTGCAAATCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCC
66 CGACCGAAGAGGCATAATGCGCAAATCAAGGATCGACCCGATCCCCCTCTGCATGCTGCCGATCC
* * *
20457415 CGCTACCACAACCCTCGGTCCGGCTGTGGCTTAGACGTGGAATGAACTACCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAA
* * * *
20457480 CCCA-GAAAACGGGCGTGCAGGTGCTCAACCGACCGGAGAGGTAGAATCCGTAAG-CAGGGGATC
196 CCCACG-AAACGGGCGTGCAGGCGCTCAACCGACCGGAGAGGCAGAAACCGCAAGCCA-GGGATC
* ** ** * * *
20457543 GGCTCGGTCTGCCCTCCGTGCTACCGATCTTGTTGTCACAACCCTCGGTAC-AGTCCGATCTTAG
259 GGCCCGACCCCCCCTCCGTGCTACCGATCCTGCTGTCACAACCCTCGAT-CTAGTCCGATCTTAG
20457607 ACTGGGGA-TGAACTCCGTATG
323 ACT-GGGATTGAACTCCGTATG
* * *
20457628 CTTAGACTGGGGATGAACTCCGTATGCCTAGGTCAACCCATGGAAC-AGGCGTACGGGCGTTGAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA-GCGTACGGGCGCTGAG
* * * *
20457692 CCGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGACTCGGTCCCCCTCTGCATGCTGCCGATC
65 CCGACCGAAGAGGCATAATGCGCAAATCAAGGATCGACCCGATCCCCCTCTGCATGCTGCCGATC
* *
20457757 CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCA
* ** * *
20457822 ACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAAAGCGCAAGCCAGGGATCG
195 ACCCACGAAACGGGCGTGCAGGCGCTCAACCGACCGGAGAGGCAGAAACCGCAAGCCAGGGATCG
* * ** * **
20457887 GCCCGACCCCCCCTGCGTGCTATCGATCCTGCTGTCGTAACCCTCGATCTGGTTTGATCTTAGAC
260 GCCCGACCCCCCCTCCGTGCTACCGATCCTGCTGTCACAACCCTCGATCTAGTCCGATCTTAGAC
20457952 TGGGATTGAACTCCGTATG
325 TGGGATTGAACTCCGTATG
* * * * *
20457971 CTTAGACTGGGGATGAACTCTGTATGCCTATGTCAACCCATGAAACGAGCATACGGACGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCT---G
* ** * *
20458036 AGGCCCGAGAGGCTGGCCGTAGAGGCATAATGCGCAAGCCGAGGATC-AGCCTGATCCCCCTCTG
63 A-G-CC--GA------CCGAAGAGGCATAATGCGCAAATCAAGGATCGA-CCCGATCCCCCTCTG
* * * * *
20458100 TATGCTACCGATCCCGCTGCTAGTCTTGCTACCACAACCCTCGGTCCGGCTGGGTCTTAGGCATG
117 CATGCTGCCGAT----C--C----C--GCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATG
* * * * * ** * * *
20458165 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAGCGAGCATGCGGGCATTCAGCCGTCTGGAGA
170 GAATGAACTACCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAACCGACCGGAGA
** ** ** * ** * * *
20458230 GGCAGAATGCATAAGCTGGGGATCAGCCCGATCCCCTTCTGCGTGCTGCCAATCCTGCTGCTAGT
235 GGCAGAAACCGCAAGCCAGGGATCGGCCCGA-CCCCCCCTCCGTGCTACCGAT-C--CTGCT-GT
* * * * * * *
20458295 CCTACTGCCGTAACCCTCGGTCTGGTTCGATCTTATACTAGTAATGAACTCCGTATG
295 -C-A----C--AACCCTCGATCTAGTCCGATCTTAGACTGGGATTGAACTCCGTATG
* * * * * * *
20458352 CTTAAACAT-GGAATGAACTCCGTGTGCCTAAGCCAACCCATGAAACAAGCGCACGGGCGCTCAG
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAG
* * * ** ** * * * *
20458416 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTACGTGTTGTCGATC
65 CCGACCGAAGAGGCATAATGCGCAAATCAAGGATCGACCCGATCCCCCTCTGCATGCTGCCGATC
* * * * **
20458480 CTGTTACCACAACCCTCGGTTCGA-TCCGATCTTAGAC-TGGGAATGAACT-CCGTATGCCTAAG
130 CCGCTACCACAACCCTCGGTCCGACT-GGGGCTTAGACAT-GGAATGAACTACC-TATGCCTAAG
* * * * * * * *
20458542 TCAACCCACGAAATGAGCGTGCGGGCACTGAGCCAACCGGAGAGGC
192 CCAACCCACGAAACGGGCGTGCAGGCGCTCAACCGACCGGAGAGGC
20458588 GTAATGCACA
Statistics
Matches: 782, Mismatches: 128, Indels: 88
0.78 0.13 0.09
Matches are distributed among these distances:
342 6 0.01
343 336 0.43
344 4 0.01
346 1 0.00
347 1 0.00
348 2 0.00
350 2 0.00
354 4 0.01
355 85 0.11
356 51 0.07
360 1 0.00
361 1 0.00
362 1 0.00
363 1 0.00
366 1 0.00
367 9 0.01
368 154 0.20
369 17 0.02
370 1 0.00
372 5 0.01
373 2 0.00
374 3 0.00
376 1 0.00
377 1 0.00
378 2 0.00
381 89 0.11
382 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGC
CGACCGAAGAGGCATAATGCGCAAATCAAGGATCGACCCGATCCCCCTCTGCATGCTGCCGATCC
CGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCAGGCGCTCAACCGACCGGAGAGGCAGAAACCGCAAGCCAGGGATCGG
CCCGACCCCCCCTCCGTGCTACCGATCCTGCTGTCACAACCCTCGATCTAGTCCGATCTTAGACT
GGGATTGAACTCCGTATG
Found at i:20457981 original size:26 final size:26
Alignment explanation
Indices: 20457945--20457997 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20457935 CTGGTTTGAT
20457945 CTTAGACT-GGGATTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
*
20457971 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20457997 C
1 C
20457998 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20458706 original size:159 final size:158
Alignment explanation
Indices: 20458351--20458852 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 158
20458341 AACTCCGTAT
* * *
20458351 GCTTAAACATGGAATGAACTCCGTGTGCCTAAGCCAACCCATGAAACAAGCGCACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGCACGGGCACTCAG
* * * * ** *
20458416 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGTTGTCGATCC
66 CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTACGTCCTGTAGATCC
* * * *
20458481 TGTTACCACAACCCTCGGTTCGATCCGA
131 CGCTACCACAACCCTCGGTCCGATCAGA
* * * ** ** *
20458509 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGCACGGGCACTCA
* * *
20458573 GCCAACCGGAGAGGC-GTAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTCCTGTAGA
65 GCCAACCGGAGAGGCAG-AATGCACAAGCCGAGGATCGACCCGATCCCCC-CTACGTCCTGTAGA
* * *
20458637 TCCCGCTGCCACAACCCTCGGTCC-AGCTAGG
128 TCCCGCTACCACAACCCTCGGTCCGATC-AGA
* * * * *
20458668 GCTTAGACATGAAATCAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCCCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGCACGGGCACTCAG
* * * * ** * * ** * * * *
20458733 TCGA-CTGAAAGGCAGAATGCGTAAGTCGGGGATCGGGCC-AGTCCTCCCTGCGTGCTGTCGATC
66 CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGA-TCCCCCCTACGTCCTGTAGATC
** * *
20458796 CTACTACCACAACCCTCGGTCTGATCCGA
130 CCGCTACCACAACCCTCGGTCCGATCAGA
* *
20458825 TCTTAGGC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
20458853 TTGGACTAGG
Statistics
Matches: 272, Mismatches: 63, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 57 0.21
158 127 0.47
159 86 0.32
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGCACGGGCACTCAG
CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTACGTCCTGTAGATCC
CGCTACCACAACCCTCGGTCCGATCAGA
Found at i:20459587 original size:26 final size:26
Alignment explanation
Indices: 20459551--20459603 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20459541 TAAGTCTGAT
*
20459551 CTTAGACTGGGAATTAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
20459577 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
20459603 C
1 C
20459604 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:20462290 original size:26 final size:26
Alignment explanation
Indices: 20462261--20462314 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
20462251 GATCCGATCT
* *
20462261 TAGATTGGAAATGAACTCCGTATGCC
1 TAGACTGGAAATGAACTCCATATGCC
**
20462287 TAGACTGGGGATGAACTCCATATGCC
1 TAGACTGGAAATGAACTCCATATGCC
20462313 TA
1 TA
20462315 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCATATGCC
Found at i:20464634 original size:26 final size:26
Alignment explanation
Indices: 20464605--20464660 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20464595 CCGGTCTGAT
20464605 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
20464631 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20464657 CTTA
1 CTTA
20464661 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20465223 original size:318 final size:317
Alignment explanation
Indices: 20464630--20465454 Score: 990
Period size: 318 Copynumber: 2.6 Consensus size: 317
20464620 AACTCCGTAT
* * * *
20464630 GCTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCATGAAACGAGTGTGCGTACGGGCGC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA----GCGTGCGGGCGC
* * * * *
20464695 TCAACCGGTTAGAGAGGCAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCCTGCATGCTGTCG
62 TCAGCCGGTTGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCG
* * * * * * ** *
20464760 ATGCTGCTACCGTAACCCTCAGTCTGCTCCGACCTTAGACTGGGAATGAACTCCATATGCTTAAG
127 ATCCTGCTACCGAAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* ** * *
20464825 TCAACCCACGAAACTAGGGTACGGGTGCTAAGCCGATCGGAGAGGCATAATGCGTAAGCCAGGGA
192 TCAACCCACGAAACGAGGGTACGGGCACTAAGCCGATCAGAGAGGAATAATGCGTAAGCCAGGGA
* * *
20464890 TCTGCCCGGTCCCCCTCTGTCTATTGTCAGTCCCGCTGCCACAACCCTCGGTCTGACTGGG
257 TCGGCCCGATCCCCCTCTGTCTACTGTCAGTCCCGCTGCCACAACCCTCGGTCTGACTGGG
* * *
20464951 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * *
20465016 CCGGCCGGAAAGGCAGAATGCACAAGTCGGGGACCGACCCGATCCCTCCCTGCGTGCTGTCGATC
66 CCGGTTGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCC-CCCTGCGTGCTGTCGATC
*
20465081 CTGCTACCGAAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTA
130 CTGCTACCGAAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
* * * * * *
20465146 ACCCACTAAACGAGTGTGCGGGCAC-ACAGCCGGTTAGAGAGGAATAATGCGTAAGCCGGGGATC
195 ACCCACGAAACGAGGGTACGGGCACTA-AGCCGATCAGAGAGGAATAATGCGTAAGCCAGGGATC
* * * * * *
20465210 GGCCCGATCCCCCTCTGTGTGCTGTCGGTCTCGCTGCCACAACCCTCGGTTTGGCTGGG
259 GGCCCGATCCCCCTCTGTCTACTGTCAGTCCCGCTGCCACAACCCTCGGTCTGACTGGG
* * *
20465269 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
20465334 CCGGTTGGAGCGGCAGAATGCGTAAGCCAGGGATCGA-CCTAGTCCCCCTTGCGTGCTATCGATC
66 CCGGTTGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGA-TCCCCCCTGCGTGCTGTCGATC
* * * * **
20465398 CTACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACT-TCGTATGC
130 CTGCTACCGAAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGC
20465455 TTAGAGTAGA
Statistics
Matches: 428, Mismatches: 72, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
316 1 0.00
317 118 0.28
318 264 0.62
321 45 0.11
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTTGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTACCGAAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
CCCACGAAACGAGGGTACGGGCACTAAGCCGATCAGAGAGGAATAATGCGTAAGCCAGGGATCGG
CCCGATCCCCCTCTGTCTACTGTCAGTCCCGCTGCCACAACCCTCGGTCTGACTGGG
Found at i:20465369 original size:159 final size:158
Alignment explanation
Indices: 20464630--20465397 Score: 617
Period size: 159 Copynumber: 4.8 Consensus size: 158
20464620 AACTCCGTAT
* * * * *
20464630 GCTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCATGAAACGAGTGTGCGTACGGGCGC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG-AA--A-TGAGCGTGCGGGCGC
* * ** * * *
20464695 TCAACCGGTTAGAGAGGCAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCCTGCATGCTGTCG
62 TCAGCCGGTTGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCG
** * *
20464760 ATGCT-GCTACCGTAACCCTCAGTCT-GCTCCGA
127 AT-CTCGCTACCACAACCCTCGGTCTGGCT-GGA
* * * * * * * * *
20464792 CCTTAGAC-TGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACT-AGGGTACGGGTGCTA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-TGAGCGTGCGGGCGCTC
* * * * **
20464855 AGCCGATCGGAGAGGCATAATGCGTAAGCCAGGGATCTG-CCCGGTCCCCCTCTGTC-TATTGTC
64 AGCCGGTTGGAGAGGCAGAATGCGTAAGCCAGGGATC-GACCCGATCCCCC-CTG-CGTGCTGTC
* * * *
20464918 -AGTCCCGCTGCCACAACCCTCGGTCTGACTGGG
126 GA-TCTCGCTACCACAACCCTCGGTCTGGCTGGA
* * * *
20464951 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
** * ** * * *
20465016 CCGGCCGGAAAGGCAGAATGCACAAGTCGGGGACCGACCCGATCCCTCCCTGCGTGCTGTCGATC
66 CCGGTTGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCC-CCCTGCGTGCTGTCGATC
20465081 -CTGCTACCGA-AACCCTCGGTCTGGTCT-GA
130 TC-GCTACC-ACAACCCTCGGTCTGG-CTGGA
* ** ** * * * *
20465110 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTTAACCCACT-AAACGAGTGTGCGGGCACAC
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA-TGAAATGAGCGTGCGGGCGCTC
* * * * * * *
20465173 AGCCGGTTAGAGAGGAATAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGG
64 AGCCGGTTGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGA
* * *
20465238 TCTCGCTGCCACAACCCTCGGTTTGGCTGGG
128 TCTCGCTACCACAACCCTCGGTCTGGCTGGA
* *
20465269 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
20465334 CCGGTTGGAGCGGCAGAATGCGTAAGCCAGGGATCGA-CCTAGTCCCCCTTGCGTGCTATCGATC
66 CCGGTTGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGA-TCCCCCCTGCGTGCTGTCGATC
20465398 CTACTGCCGC
Statistics
Matches: 477, Mismatches: 104, Indels: 54
0.75 0.16 0.09
Matches are distributed among these distances:
158 78 0.16
159 347 0.73
160 13 0.03
161 3 0.01
162 36 0.08
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGTTGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCT
CGCTACCACAACCCTCGGTCTGGCTGGA
Found at i:20465862 original size:26 final size:26
Alignment explanation
Indices: 20465824--20465873 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20465814 GGCTCAAACT
20465824 CTTAGACTGGGAATGAACTCTGTAAG
1 CTTAGACTGGGAATGAACTCTGTAAG
20465850 CTTAGACAT-GGAATGAACTCTGTA
1 CTTAGAC-TGGGAATGAACTCTGTA
20465874 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTAAG
Found at i:20466203 original size:26 final size:26
Alignment explanation
Indices: 20466162--20466214 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20466152 CCGGTCTAAT
20466162 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20466188 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
20466214 C
1 C
20466215 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20466659 original size:367 final size:355
Alignment explanation
Indices: 20465976--20466666 Score: 843
Period size: 367 Copynumber: 1.9 Consensus size: 355
20465966 TGTCGATCCC
* *
20465976 GCTGCCACAACCCTTGGTTCAGCTAGGGCATAGACATGGAATAAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCAGCTAGGGCATAGACATGGAATAAACTCCCTATGCCTAAGCCAAC
* * *
20466041 CCACGAAACAGGCGTGCGAGCTCTCAGCTAGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGAC
66 CCACGAAACAGGCGTGCGAGCTCTCAACCAGCCAGAGAGGCAGAATACGCAAGCCAGGGATCGAC
* * * *
20466106 CCAGTCCCCCCTAGGTGCTGTCGATCTTGCTACCGCAACCTTCTGTCCGGTCTAATCTTAGACTG
131 CCAGTCCCCCCTAGGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTG
* *
20466171 GGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
196 GGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * * * * * **
20466236 GGGTACGGGCGCTCAGTCGGCCGGAGAGGCATAATGCGTAAGTCGGGGGTCAGCCCGGTCCCCCT
261 GGGTACAGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCT
20466301 CTGCATTCTGCCAATCTCACTGCCGGTCCT
326 CTGCATTCTGCCAATCTCACTGCCGGTCCT
* * * * *
20466331 GCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCAGCTAGGGCATAGACATGGAATAAACTCCCTATGCCTAAGCCAAC
* * * * * * *
20466396 CCACGGAAC-GAGTGTGCG-GGTGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCG
66 CCACGAAACAG-GCGTGCGAGCT-CTCAACCAGCCAGAGAGGCAGAATACGCAAGCCAGGGATCG
* *
20466459 ACCCAGTCCCCCCT-GCCTGCTACCGATCCTGCTGCTGGTCCTGCTATCGCAACCCTCAGTCCGG
129 ACCCAGTCCCCCCTAG---G-T---G---CTG-T-C-GATCCTGCTACCGCAACCCTCAGTCCGG
* * *
20466523 TCCGATCTTAGACTGGGAATGAATTCTATATGCTTAGACATA-GAATGAACTCCGTATGCCTAAG
181 TCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TAGGAATGAACTCCGTATGCCTAAG
* **
20466587 CCAACCCATGAAACGAGCTTTA-AGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGG
245 CCAACCCACGAAACGAG-GGTACAGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGG
20466651 ACCAGCCCGGTCCCCC
309 ACCAGCCCGGTCCCCC
20466667 CTACGTGCTG
Statistics
Matches: 280, Mismatches: 39, Indels: 22
0.82 0.11 0.06
Matches are distributed among these distances:
354 4 0.01
355 120 0.43
357 1 0.00
358 1 0.00
361 1 0.00
364 3 0.01
365 1 0.00
366 1 0.00
367 144 0.51
368 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (355 bp):
GCTGCCACAACCCTCGGTCCAGCTAGGGCATAGACATGGAATAAACTCCCTATGCCTAAGCCAAC
CCACGAAACAGGCGTGCGAGCTCTCAACCAGCCAGAGAGGCAGAATACGCAAGCCAGGGATCGAC
CCAGTCCCCCCTAGGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTG
GGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
GGGTACAGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCT
CTGCATTCTGCCAATCTCACTGCCGGTCCT
Found at i:20467109 original size:26 final size:26
Alignment explanation
Indices: 20467080--20467132 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20467070 CCGGTCTGAT
20467080 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20467106 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20467132 C
1 C
20467133 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20467584 original size:26 final size:26
Alignment explanation
Indices: 20467548--20467625 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
20467538 CTAGTCTGAT
*
20467548 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
20467574 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20467600 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20467626 TCTAAGTCAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20468040 original size:158 final size:157
Alignment explanation
Indices: 20467762--20468236 Score: 535
Period size: 159 Copynumber: 3.0 Consensus size: 157
20467752 TCCTGCTACT
* *
20467762 ACAACCTTCGGTTCGGCTAGG-GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATG
1 ACAACCCTCGGTCCGGCT-GGAGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATG
* *
20467826 AAACAAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAAAATGCGTGAGCCGAGGATCGGC-CTGA
65 AAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCGCGAG-CGAGGATCGGCTC-GA
**
20467890 TCCCCCCTGTGTGCTGTCGATCCTGCTGTC
128 TCCCCCCTGCATGCTGTCGATCCTGCTGTC
* * * *
20467920 GCAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCAT
1 ACAACCCTCGGTCCG-GCTGGAGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCAT
* * * * * * *
20467983 GAAACGAGTGTGCGGGCGCTGAGCCGACTGGAGAGGCATAATGCGCAAGCTGAGGATCGGCTCGA
64 GAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCGCGAGC-GAGGATCGGCTCGA
* ** * * * **
20468048 TTGCCTTCTGCATGCTATCGGTCCCGCTACC
128 -TCCCCCCTGCATGCTGTCGATCCTGCTGTC
* * *
20468079 ACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
1 ACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGA
* * * * * *
20468144 AACAAGCATGCGGGTGCTCAACCGACCGGAGAGGCAGAATGTGCGAGCCAGGGATCGGCTCGGTC
66 AACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCGCGAGCGA-GGATCGGCTCGATC
20468209 CCTCCCTGCATGCTGTCGATCCTGCTGT
130 CC-CCCTGCATGCTGTCGATCCTGCTGT
20468237 GCACCGTGGC
Statistics
Matches: 255, Mismatches: 52, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 108 0.42
159 143 0.56
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
ACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGA
AACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCGCGAGCGAGGATCGGCTCGATCC
CCCCTGCATGCTGTCGATCCTGCTGTC
Found at i:20468373 original size:26 final size:26
Alignment explanation
Indices: 20468334--20468383 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20468324 GGCTCAAACT
20468334 CTTAGACTGAGAATGAACTCCGTAAG
1 CTTAGACTGAGAATGAACTCCGTAAG
20468360 CTTAGACATG-GAATGAACTCCGTA
1 CTTAGAC-TGAGAATGAACTCCGTA
20468384 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTAAG
Found at i:20469206 original size:26 final size:26
Alignment explanation
Indices: 20469175--20469227 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20469165 CCAGTATGAT
20469175 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
20469201 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20469227 C
1 C
20469228 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20469957 original size:159 final size:159
Alignment explanation
Indices: 20469337--20469959 Score: 549
Period size: 159 Copynumber: 3.9 Consensus size: 159
20469327 GTCCCACTAC
* * * * ***
20469337 CGATCCTACTGCCACAACCCTCAGTC-CGACTGGGG-TTAGACATGGAATGAACTCTAGATGCCT
1 CGATCCTGCTGCCAGAACCCTCGGTCTAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * * * * * *
20469400 AAGCCAACCCACGAAACAAGCGAGCAGGCGCTCAACCAGCCAGAGAGGCAAAATGCGCAAGTCGG
65 AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCAGCCGGAAAGGCAGAATGCGCAAGCCAG
* * *
20469465 GGATCGGCCTGGTCCCCC-CTGTGTACTGT
130 GGATCGGCCCGGTCCCCCTCTGCGTGCTGT
* * *** * *
20469494 CGATCCTGCTGTC-GCAACCCTCGGTCTGGTCT-TATCTTAGAC-TGGGAATGAACTTCGTATGC
1 CGATCCTGCTGCCAG-AACCCTCGGTCTAG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGC
* * * * ** *
20469556 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTTGGAAAGGCATAATGCGCAAGCC
63 CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCAGCCGGAAAGGCAGAATGCGCAAGCC
* * * * * * * *
20469621 GGGGATTGGCTCGATCGCACTCTACTTGCTGT
128 AGGGATCGGCCCGGTCCCCCTCTGCGTGCTGT
* * * * * **
20469653 CGATCCCGCTGCCACAACCTTCAGTCCAATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGATCCTGCTGCCAGAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* ** * * * **
20469718 AGCCAACCCATGAAACGGGCGCACGGGTGCTCAACCAGTCGAAAAGATAGAATGCGCAAGCCAGG
66 AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCAGCCGGAAAGGCAGAATGCGCAAGCCAGG
20469783 GATCGGCCCGGTCCCCCTCTGCGTGCTG-
131 GATCGGCCCGGTCCCCCTCTGCGTGCTGT
* * *
20469811 CTGGTCCTGTTGCCAGAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCTT
1 C-GATCCTGCTGCCAGAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * ** * * *
20469876 AAGCCAACCCATGAAACGGGCGTGCTGGCGCTCAGCTGGCCGGAGAGGCAGAATGTGCAAGTCAG
65 AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCAGCCGGAAAGGCAGAATGCGCAAGCCAG
20469941 GGATCGGCCCGGTCCCCCT
130 GGATCGGCCCGGTCCCCCT
20469960 ATGTAATGTC
Statistics
Matches: 361, Mismatches: 96, Indels: 16
0.76 0.20 0.03
Matches are distributed among these distances:
157 22 0.06
158 90 0.25
159 248 0.69
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CGATCCTGCTGCCAGAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCAGCCGGAAAGGCAGAATGCGCAAGCCAGG
GATCGGCCCGGTCCCCCTCTGCGTGCTGT
Found at i:20470393 original size:26 final size:26
Alignment explanation
Indices: 20470357--20470409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20470347 CTGGTTTGAT
*
20470357 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20470383 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20470409 C
1 C
20470410 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20470827 original size:26 final size:26
Alignment explanation
Indices: 20470788--20470837 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20470778 GGCTCAAACT
20470788 CTTAGACTGAGAATGAACTCCGTAAG
1 CTTAGACTGAGAATGAACTCCGTAAG
20470814 CTTAGACATG-GAATGAACTCCGTA
1 CTTAGAC-TGAGAATGAACTCCGTA
20470838 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTAAG
Found at i:20471499 original size:144 final size:143
Alignment explanation
Indices: 20471240--20471508 Score: 314
Period size: 144 Copynumber: 1.9 Consensus size: 143
20471230 CAACCGGTTG
* * * *
20471240 GAGAGACAGAATGCGCAAGTCGAGGACCGACCCGATCCCCCCTGCGTGCTCTCGATCCTGCTGCC
1 GAGAGACAGAATGCACAAGTCGAGGACCGACCCGATCCCCCCTGCGGGCTCTCGATCCCGCTACC
* * * * *
20471305 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATAAACTCCGCATGCCTAAGTCAACCCACGA
66 ACAACCCTCGGTCTGATCTGAGCTTAGACTGAGAATAAACTCCGCATGCCTAAGCCAACCCACGA
20471370 AATGAGTCAGTCA
131 AATGAGTCAGTCA
* * *
20471383 GAGAGACATAATGCACAAG-CTGGGGATCGACCCGATCCCCCTCTGCGGGCTGC-CGATCCCGCT
1 GAGAGACAGAATGCACAAGTC-GAGGACCGACCCGATCCCCC-CTGCGGGCT-CTCGATCCCGCT
* * *
20471446 ACCACAACCTTCGGTCTGAT-TGGGCTTTAGACAT-AGAATGAACTCC-CTATGCCTAAGCCAAC
63 ACCACAACCCTCGGTCTGATCTGAGC-TTAGAC-TGAGAATAAACTCCGC-ATGCCTAAGCCAAC
20471508 C
125 C
20471509 GATGAAACGA
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
142 1 0.01
143 39 0.37
144 63 0.60
145 2 0.02
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (143 bp):
GAGAGACAGAATGCACAAGTCGAGGACCGACCCGATCCCCCCTGCGGGCTCTCGATCCCGCTACC
ACAACCCTCGGTCTGATCTGAGCTTAGACTGAGAATAAACTCCGCATGCCTAAGCCAACCCACGA
AATGAGTCAGTCA
Found at i:20471665 original size:26 final size:26
Alignment explanation
Indices: 20471629--20471681 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20471619 CCGATCTGAT
20471629 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20471655 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20471681 C
1 C
20471682 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20472170 original size:159 final size:158
Alignment explanation
Indices: 20471786--20472399 Score: 563
Period size: 159 Copynumber: 3.9 Consensus size: 158
20471776 TGTCGGTCCC
* * * * ***
20471786 GCTGCCGGTCCTGCTGCCACAACCTTCGGTCTGGCTAGGG-TTAGACATGGAATGAACTCTGGAT
1 GCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * * * *
20471850 GCCTAAGCCAACCCATAAAACAAGCGTACAGGCGCTCAACCGGCCAGAGAGGCAAAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAG
* *
20471915 CCGGGGATCGACCTAATCCCCCCT-TGT
131 CCGGGGATCGACCCAATCCCCTCTGTGT
* ** ** * * ** * *
20471942 GCTGTCGATCATGCTGCCGTAACCCTCGATCCGG-TCCGATCTTAGAC-TGGGAATGAACTTCGT
1 GCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCT-AGGGCTTAGACAT-GGAATGAACTCCCT
* * * * ** * *
20472005 ATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAGTCAGTTGGAGAGGCATAATGCGTA
64 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCA
* *
20472070 ACCCGGGGATCGACCCAATCGCCCTCTGCGT
129 AGCCGGGGATCGACCCAATC-CCCTCTGTGT
* * *
20472101 GCTGTCGGTCCCGCTGGCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* * * * *
20472166 GCCTAAGCCAACCCATGAAACGAGCGCGCGGGTGCTCAGCCAGCCGAAAAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAG
* ** *
20472231 CCGGGGATCGGCCCGGTCCCCCTTTGTGT
131 CCGGGGATCGACCCAAT-CCCCTCTGTGT
* * * **
20472260 GCTG-CTGGTCCCGTTGCCAGAACCCTCTGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTA
1 GCTGTC-GGTCCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTA
* * * * ** * * *
20472324 TACCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATGCACAA
65 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAA
*
20472389 GCTGGGGATCG
130 GCCGGGGATCG
20472400 GCCTGGTCCC
Statistics
Matches: 363, Mismatches: 86, Indels: 15
0.78 0.19 0.03
Matches are distributed among these distances:
155 1 0.00
156 28 0.08
157 84 0.23
158 6 0.02
159 241 0.66
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAG
CCGGGGATCGACCCAATCCCCTCTGTGT
Found at i:20472499 original size:26 final size:26
Alignment explanation
Indices: 20472470--20472522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20472460 CCGATCCGAT
*
20472470 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACACCGTATG
20472496 CTTAGACATGGAATGAACACCGTATG
1 CTTAGACATGGAATGAACACCGTATG
20472522 C
1 C
20472523 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:20472852 original size:26 final size:26
Alignment explanation
Indices: 20472811--20472863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20472801 CTGGTCTGAT
20472811 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20472837 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20472863 C
1 C
20472864 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20473698 original size:158 final size:157
Alignment explanation
Indices: 20473219--20473719 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 157
20473209 CTCCGTATGC
* *
20473219 TTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAGC
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
20473283 CGG-CTGGAGAGGAAGAATGCGCAAGCTGGGGACCGGCTCGATCCCCCCTTACATGCTGTCGATC
65 CGGTC-GGAGAGGCAGAATGCGCAAGCCAGGGATCGGC-CGATCCCCCC-TGCGTGCTGTCGATC
* * * * * * *
20473347 CTGTTGCTGCAACCCTTGGTCCGATCTGATC
127 CTGCTGCCGCAACCCTTAGTTCGGTCTAATG
* * *
20473378 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTGAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * ** * * *
20473443 AGTCGGAGAGGCATAATGCGCAAGTCAGGGTTTGGCC-AGTCCTCATCTGCGTGCTATCGGTCCC
66 GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCGA-TCC-CCCCTGCGTGCTGTCGATCCT
* * * * * **
20473507 GCTGCCACAACCCTCA-ATCCGACTAGGG
129 GCTGCCGCAACCCTTAGTTCGGTCTAATG
* * * * * *
20473535 CTTAGA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGTTCAA
1 -TTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
20473599 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCCCTGCGTGCTGTCGATCC
64 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGG-CCGATCCCCCCTGCGTGCTGTCGATCC
*
20473664 TGCTGCCGCAACCCTTAGTTCGGTTTAATG
128 TGCTGCCGCAACCCTTAGTTCGGTCTAATG
20473694 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20473720 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 64, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 164 0.61
159 97 0.36
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCGATCCCCCCTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTTAGTTCGGTCTAATG
Found at i:20473734 original size:26 final size:26
Alignment explanation
Indices: 20473694--20473745 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20473684 CGGTTTAATG
20473694 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
20473720 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20473746 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20475783 original size:523 final size:519
Alignment explanation
Indices: 20474420--20475865 Score: 1333
Period size: 532 Copynumber: 2.7 Consensus size: 519
20474410 AAACTCTTGA
*
20474420 ACTGGGAATGAACTCCATATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
1 ACTGGGAATGAACTCCATATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * *
20474485 ACGAGCGTGCGGGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGTCAGGGA-TCGACCTGGTC
66 A-GAGCTTACGGGCGCTCAG-CCGTCGGAGAGGCAGAATGCGCAAGCCGGGGACT-GACCTGGTC
* * * * * * * **
20474549 CCCCTCTACATGCTGCCAGTCTCGCTGC-CATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAA
128 CCCC-CTGCATGCTTCGA-TCT-GCTACGC--AACCCTCGGTCCAGTTTGATCTTAGAC-TGGAA
* * * * * *
20474613 TGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTATGGGTGCTCAGCCGATCGGAGAGGC
187 TGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTA-CGGTGCTGAGCCGACCGGAGAGGC
* * * * * * *
20474678 AGAATGCACAAGCCGGGGATCAGCCCGATCCCTC-CTGCGTGCTGTCGATACTGCTATCGCAACC
251 ATAATGCGCAAGCCGGGGATCAG-TCGATCCCTCTCTGCGTGCTGCCGATCCTGCTACCACAACC
** * * * *
20474742 CTCGATCTGATTCGATCTTATGCTTAGATTGGGAAT-AACTCTTTATTCC-AAGTCAACCCACGA
315 CTCG----G-TTCGATCCGAT-CTTAGACTGGGAATGAACTCTCTATGCCTAAGTCAACCCATGA
* * * *
20474805 AATGAGCGTCCGAGCGCTCAATCAGCCAAAGAGGCCGACCAGAGAGGCAGAATACGTAAGTCGGG
374 AACGAGCGTCCGAGCGCTCAATCAGCCAAAGAGGCCGACCAGAGAGGCAAAATACGCAAGCCGGG
* * *
20474870 GATCAGCTCGGTCCCCCCCCAACGTGCTATCGATCCTACTACTGGTCCTGCTATCGTAACCCTCG
439 GATCAGCTCGAT-CCCCCCCAACGTGCTATCGATCCTACTACTGGTCCAGCTACCGTAACCCTCG
* * *
20474935 ATCTAGTTTGATCTTAG
503 ATCCAGTCTAATCTTAG
* * ** * * * *
20474952 ACTAGGAATGATCTCTGTATGCTTAGATATGCAATGAACTCTGTATGCCTAAGCCAACCC-CTGA
1 ACTGGGAATGAACTCCATATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-GA
* * * * ***
20475016 AATGAG-TGTATGGGCGCTCAGCCATCCGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCAAT
65 AA-GAGCT-TACGGGCGCTCAGCCGT-CGGAGAGGCAGAATGCGCAAGCCGGGGACTGACCTGGT
* * *
20475080 CCCCTCCTGCGTGCTGTCGATCTTGCTACCGCAACCCTTGGTCCAGTCTGATCTTAGACTAGGAA
127 CCCC-CCTGCATGCT-TCGATC-TGCTA-CGCAACCCTCGGTCCAGTTTGATCTTAGACT-GGAA
* * * ** * * *
20475145 TGAAC-TCTGTAT-CCTAAAGTCAACCCA-CAAA-ATGCGCATTCGGACACTGAGCCGGCCAGAA
187 TGAACTTC-GTATGCCT-AAGTCAACCCATGAAACAAGCG--TACGG-TGCTGAGCCGACCGGAG
* * * *
20475206 AGGCATAATGCGCAAGCCGGGGATCAGTTCGATCCCCCTCTGCATGCTGCCGATCCTACTACCAT
247 AGGCATAATGCGCAAGCCGGGGATCAG-TCGATCCCTCTCTGCGTGCTGCCGATCCTGCTACCAC
*
20475271 AACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA
311 AACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAA
* * * * * ** **
20475336 CGAGTGTGCGGGTGCTCAGTCAGCCGGAGAGGCCGACTGGAGAGGCAAAATGA-GCAAGCCGGGG
376 CGAGCGTCCGAGCGCTCAATCAGCCAAAGAGGCCGACCAGAGAGGCAAAAT-ACGCAAGCCGGGG
* * ** * * * *
20475400 ATCGGC-CTGAT-CCCTCCTGCGTGCTGTCGATCCTGCTGCTGGTCCAGCTACCGTAACCCTCGG
440 ATCAGCTC-GATCCCCCCCAACGTGCTATCGATCCTACTACTGGTCCAGCTACCGTAACCCTCGA
*
20475463 TCCGGTCTAATCTTAG
504 TCCAGTCTAATCTTAG
** *
20475479 ACTGGGAATGAACTCCCCATGCGTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 ACTGGGAATGAACTCCATATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * *
20475544 A-AGCTTACGGGTGCTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGACTGGCTTGGTTCC
66 AGAGCTTACGGGCGCTCAGCC-GTCGGAGAGGCAGAATGCGCAAGCCGGGGACTGACCTGGTCCC
* *
20475608 CCCTGCATGCTATCGATACTGCTACGCAACCCTCGATCCTGTTTGATCTTAGACTGGGAATGAAC
130 CCCTGCATGCT-TCGAT-CTGCTACGCAACCCTCGGTCCAGTTTGATCTTAGACT-GGAATGAAC
* *
20475673 TTCGTATGCCTGAGTTAACCCATGAAACAAGCGTACGAGTGCTGAGCCGACCGGAGAGGCATAAT
192 TTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACG-GTGCTGAGCCGACCGGAGAGGCATAAT
* * * *
20475738 GCGTAAGCCGGGGATCAGTCGGATCCCTCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCAG
256 GCGCAAGCCGGGGATCAGTC-GATCCCTCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * ** * * *
20475803 TTCG-GCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGT
320 TTCGATC-CGATCTTAGAC-TGGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGT
20475866 GCAGGAGCTC
Statistics
Matches: 732, Mismatches: 150, Indels: 73
0.77 0.16 0.08
Matches are distributed among these distances:
522 3 0.00
523 177 0.24
524 29 0.04
525 53 0.07
526 2 0.00
527 123 0.17
528 22 0.03
529 72 0.10
530 5 0.01
531 11 0.02
532 202 0.28
533 32 0.04
534 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (519 bp):
ACTGGGAATGAACTCCATATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
AGAGCTTACGGGCGCTCAGCCGTCGGAGAGGCAGAATGCGCAAGCCGGGGACTGACCTGGTCCCC
CCTGCATGCTTCGATCTGCTACGCAACCCTCGGTCCAGTTTGATCTTAGACTGGAATGAACTTCG
TATGCCTAAGTCAACCCATGAAACAAGCGTACGGTGCTGAGCCGACCGGAGAGGCATAATGCGCA
AGCCGGGGATCAGTCGATCCCTCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTTCGAT
CCGATCTTAGACTGGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGTCCGAGCGC
TCAATCAGCCAAAGAGGCCGACCAGAGAGGCAAAATACGCAAGCCGGGGATCAGCTCGATCCCCC
CCAACGTGCTATCGATCCTACTACTGGTCCAGCTACCGTAACCCTCGATCCAGTCTAATCTTAG
Found at i:20476740 original size:26 final size:26
Alignment explanation
Indices: 20476703--20476754 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20476693 GCACAAACTT
20476703 TTAGACTGGGAATGAAATCCGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
*
20476729 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAAATCCGTATGC
20476755 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCGTATGC
Found at i:20477263 original size:26 final size:26
Alignment explanation
Indices: 20477233--20477285 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20477223 CTGGTTTGAT
* *
20477233 CTTAGAC-TGGGAATGATCTCCCTATG
1 CTTAGACAT-GGAATGAACTCCATATG
20477259 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
20477285 C
1 C
20477286 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:20477595 original size:159 final size:158
Alignment explanation
Indices: 20477258--20477639 Score: 374
Period size: 159 Copynumber: 2.4 Consensus size: 158
20477248 ATCTCCCTAT
* *
20477258 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAG
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAG
* * ** * * * *
20477323 CCATCCGGAGAGGCAGAATGTGCAAGTCAGGGACCGGCCCAATCCCCTCTGCGTGCTGTCGATCT
66 CCATCCGAAAAGGCAGAATACGCAAGCCAGGGACCAGCCCAATCCCCTCTGCGTGCTGCCGATCC
* *
20477388 TGCCACCGCAACCCTCAGTCCGATCTGA
131 CGCCACCACAACCCTCAGTCCGATCTGA
* * * * * * * *
20477416 TCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATTCGGTCGGTGA
1 GCTTAGAAAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCA
* * * * *
20477480 GCTGA-CCGAAAAGGCATAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGA
65 GC-CATCCGAAAAGGCAGAATACGCAAGCCAGGGACCAGCCCAAT-CCCCTCTGCGTGCTGCCGA
** * * *
20477544 TCCCGCTGCCACAACCCTCGGTCTGA-CTGGG
128 TCCCGCCACCACAACCCTCAGTCCGATCT-GA
* * * *** *
20477575 GCTTAGAAATGGAATGAACTCCCTTTGCCTAAGCCAACCCATGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAG
20477640 ATGGCCGGAG
Statistics
Matches: 175, Mismatches: 44, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.01
158 85 0.49
159 87 0.50
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAG
CCATCCGAAAAGGCAGAATACGCAAGCCAGGGACCAGCCCAATCCCCTCTGCGTGCTGCCGATCC
CGCCACCACAACCCTCAGTCCGATCTGA
Found at i:20477758 original size:26 final size:26
Alignment explanation
Indices: 20477729--20477780 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20477719 TGATCCGATA
20477729 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* *
20477755 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
20477781 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:20478632 original size:26 final size:26
Alignment explanation
Indices: 20478596--20478648 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20478586 CCAGTTCAAA
20478596 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20478622 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20478648 C
1 C
20478649 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20479355 original size:26 final size:26
Alignment explanation
Indices: 20479319--20479371 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20479309 GGCTCAAACT
20479319 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20479345 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20479371 C
1 C
20479372 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20479558 original size:26 final size:26
Alignment explanation
Indices: 20479529--20479581 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20479519 CTGATCTGAT
* *
20479529 CTTAAAC-TGGGAATGAACTCTGTATG
1 CTTAAACAT-GGAATAAACTCCGTATG
*
20479555 CTTAGACATGGAATAAACTCCGTATG
1 CTTAAACATGGAATAAACTCCGTATG
20479581 C
1 C
20479582 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACATGGAATAAACTCCGTATG
Found at i:20480429 original size:26 final size:26
Alignment explanation
Indices: 20480389--20480440 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20480379 CGGTTCGATT
*
20480389 TTAGACTGAGAATGAACTCTGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
* *
20480415 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
20480441 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:20481129 original size:26 final size:26
Alignment explanation
Indices: 20481093--20481145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20481083 CAGGTTCAAT
20481093 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
* *
20481119 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
20481145 C
1 C
20481146 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:20481341 original size:26 final size:25
Alignment explanation
Indices: 20481302--20481351 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
20481292 CCGGTTTGAT
20481302 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCTGTATG
20481327 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGAC-TGGAATGAACTCTGTAT
20481352 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTATG
Found at i:20481831 original size:26 final size:26
Alignment explanation
Indices: 20481795--20481847 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20481785 ATGATTCGAT
*
20481795 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20481821 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20481847 C
1 C
20481848 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20482188 original size:26 final size:26
Alignment explanation
Indices: 20482158--20482210 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20482148 CTGGTTCGAT
20482158 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
20482184 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20482210 C
1 C
20482211 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:20482467 original size:355 final size:352
Alignment explanation
Indices: 20481612--20482635 Score: 1120
Period size: 355 Copynumber: 2.8 Consensus size: 352
20481602 ACCAGTCTCG
* * * * *
20481612 CTACCACAACCCTCGATCCAGCTAGGGTTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACC
1 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * *
20481677 CACGAAACT-AGCATG-TGGGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
66 CATGAAA-TGAGCGTGCAGGGCTCAGTCGGCCGGAGAGGCAGAACGCGCAAGCCAAGGATC-GCC
* * * * * * *
20481740 CGGTCCCCCTTAG-GTGCTGTCGATCCTGCTGCCACAACCCTCGATATGATTCGATCTTAGACTG
129 TGGTCCCCCCT-GCATGCTGTCGATCCTGCTGCCGCAACCCTCGCTCTGGTTCGATCTTAGACTG
*
20481804 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAA
193 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * * *
20481869 GCGTGCGGGCACTCACCAGAAAGGCTGGTCGGAGAGGCGTAATGCGCAAGTCAGGGATCAGCTCG
258 GCGTACGGGCACTCACC---AA------TCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCG
* * *
20481934 GTCCCCCTCTACGTGCTACCGATCCCACTGCCGGTCATA
314 ATCCCCCTCTACGTGCTACCGATCCCACTGCAGATCATA
* *
20481973 CTACCACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * ** * * *
20482038 CATGAAACGGGCGTGCGGGTGCTCAGCCGGTCAGAGAGGCAGAACGCATAAGCCGAGGACCGGCT
66 CATGAAATGAGCGTGCAGG-GCTCAGTCGGCCGGAGAGGCAGAACGCGCAAGCCAAGGATCGCCT
* *
20482103 CGGTCCCCCCTGCATACTGTCGATCCTGCTGCCGCAACCCTTGCTCTGGTTCGATCTTAGACTGG
130 -GGTCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGCTCTGGTTCGATCTTAGACTGG
* *
20482168 GAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAG
194 GAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* *
20482233 CGTACGGGCGCTCAGCCAATCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATCCCCCTC
259 CGTACGGGCACTCA-CCAATCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCGATCCCCCTC
* * * * *
20482298 TGCGTGCTGCCGATCCCGCTGCAGATCCTG
323 TACGTGCTACCGATCCCACTGCAGATCATA
* * * *
20482328 CTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
20482393 CATGAAATGAGCGTGCAGGCGCTCAGTCGGCCGGAGAGGCAGAACGCGCAAGCCAAGGATCGACC
66 CATGAAATGAGCGTGCAGG-GCTCAGTCGGCCGGAGAGGCAGAACGCGCAAGCCAAGGATCG-CC
* * * * * * *
20482458 TGATCCCCCCTACATGCTATCGATCCTGCTGCTGGTCCTACTACCATAACCCTCGGTTCGGTCCG
129 TGGTCCCCCCTGCATGCTGTCGATCCTGCTGC-CG--C-A--ACCCT--CGCTC---T-GGTTCG
* * * *
20482523 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGAAAT-GGAATGAACTCCATATGCCTAAGCCAA
182 ATCTTAGACTGGGAATGAACTCTGTATGCTTAG-ACTGGGGATGAACTCCGTATGCCTAAGTCAA
* ** *
20482587 CCCATGAAACGAGCGTACAGGCACTCAACCGGTCGGAGAGGCAGAATGC
246 CCCATGAAACGAGCGTACGGGCACTC-ACCAATCGGAGAGGCATAATGC
20482636 GTAAGCTGGG
Statistics
Matches: 555, Mismatches: 87, Indels: 36
0.82 0.13 0.05
Matches are distributed among these distances:
355 201 0.36
356 3 0.01
358 1 0.00
359 1 0.00
361 74 0.13
362 5 0.01
363 162 0.29
364 2 0.00
366 1 0.00
367 102 0.18
368 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (352 bp):
CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CATGAAATGAGCGTGCAGGGCTCAGTCGGCCGGAGAGGCAGAACGCGCAAGCCAAGGATCGCCTG
GTCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGCTCTGGTTCGATCTTAGACTGGGA
ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
TACGGGCACTCACCAATCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCGATCCCCCTCTAC
GTGCTACCGATCCCACTGCAGATCATA
Found at i:20483062 original size:26 final size:26
Alignment explanation
Indices: 20483026--20483078 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20483016 CCGGTCCGAT
20483026 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
20483052 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATAAACTCCATATG
20483078 C
1 C
20483079 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:20483775 original size:26 final size:26
Alignment explanation
Indices: 20483737--20483815 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
20483727 GGCTCAAAAT
*
20483737 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGCATG
*
20483763 CTTAGACATGGAATGAACTCTGCATG
1 CTTAGACATGGAATGAACTCCGCATG
*
20483789 CCTAGACATGGAATGAACTCCGCATG
1 CTTAGACATGGAATGAACTCCGCATG
20483815 C
1 C
20483816 CTAAGGCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGCATG
Found at i:20483816 original size:26 final size:26
Alignment explanation
Indices: 20483746--20483818 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
20483736 TCTTAGACTA
* *
20483746 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGCATGCCTAGACAT
*
20483772 GGAATGAACTCTGCATGCCTAGACAT
1 GGAATGAACTCCGCATGCCTAGACAT
20483798 GGAATGAACTCCGCATGCCTA
1 GGAATGAACTCCGCATGCCTA
20483819 AGGCAACCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (26 bp):
GGAATGAACTCCGCATGCCTAGACAT
Found at i:20484308 original size:26 final size:26
Alignment explanation
Indices: 20484264--20484316 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20484254 CCGGCCGGAT
*
20484264 CTTAGACTGAGAATAAACTCTGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
* * *
20484290 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
20484316 C
1 C
20484317 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:20484775 original size:12 final size:12
Alignment explanation
Indices: 20484758--20484789 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
20484748 TGAGGGATAG
20484758 GGGGCCAATATA
1 GGGGCCAATATA
20484770 GGGGCCAATATA
1 GGGGCCAATATA
*
20484782 AGGGCCAA
1 GGGGCCAA
20484790 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:20485474 original size:158 final size:156
Alignment explanation
Indices: 20484987--20485474 Score: 507
Period size: 158 Copynumber: 3.1 Consensus size: 156
20484977 TTAGACATGT
** * * *
20484987 AATGAACTCCATATGCCTAAGCCAACCCACG-AA-GGAGCGTGCGGGTGCTCAGCCGGCCAGAGT
1 AATGAACTCTGTATGCCTAAGCCAACCCACGAAACGG-GCGTGCGGGTGCTCAGCCAG-CTGAGA
* * *
20485050 GGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCTACGTGCTGTCGATCCTGCTGTCGTAA
64 GGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAA
* *
20485114 CCCTCGGTTTGGTCTGATCTTAGATTAGG
129 CCCTCGGTCTGGTCCGATCTTAGATT-GG
* * * * * * *
20485143 AATGAACTCTGTATGCCTAAGTCGACCCATGAAACGAGCGTGCGGGCGCTGAACCAG-TGAAGAG
1 AATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCAGCTG-AGAG
* * * * * *
20485207 GCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGTCGGTCCTACTGCCACAA
65 GCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCAA
* ** ** *
20485272 CCCTCGATCTGGTTGGGGCTTAGACATGG
129 CCCTCGGTCTGGTCCGATCTTAGA-TTGG
** * *
20485301 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCCGGTGCTCAGTCAGCTTGAGAG
1 AATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCAGC-TGAGAG
* ** * * *
20485366 GCAGAATGCGCAAGCTGACGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCCTGCTGCCGCAAC
65 GCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAAC
*
20485431 CCTTGGTCTGGTCCGATCTTAGATTGGG
130 CCTCGGTCTGGTCCGATCTTAGATT-GG
*
20485459 AATCAACTCTGTATGC
1 AATGAACTCTGTATGC
20485475 TTAAACTGGG
Statistics
Matches: 262, Mismatches: 61, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
155 1 0.00
156 58 0.22
157 23 0.09
158 143 0.55
159 35 0.13
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
AATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCAGCTGAGAGG
CAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
CTCGGTCTGGTCCGATCTTAGATTGG
Found at i:20486206 original size:26 final size:26
Alignment explanation
Indices: 20486168--20486220 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20486158 GGCTCACAAT
20486168 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20486194 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20486220 C
1 C
20486221 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20486565 original size:159 final size:157
Alignment explanation
Indices: 20486193--20486631 Score: 456
Period size: 159 Copynumber: 2.8 Consensus size: 157
20486183 AACTCCGTAT
* * *
20486193 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
20486258 CCGGTCGGAGAAGCAAAATGTGCAAGCTAGGGATCGGCCCGGTCCCCCTTGCATGCTGTCAATCC
66 CCAGTCGGAGAGGCAAAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTTGCATGCTGTCAATCC
* * *
20486323 TGCTGCCACAATCCTAGTCCAGTCAGA
131 TGCTGCAACAATCCGAGTCCACTCAGA
* * * * * * *
20486350 TCTTAGAC-TGGGAATGAACTCTGCATGCATAAGTCAACCCACGAAACGAGCATACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * **
20486414 GCCAGCCGAAGAGGCATAATGTGCAGGCCGGGGATCGGCTCGATCCCCCTCTGCATGCTGTCGGT
65 GCCAGTCGGAGAGGCAAAATGTGCAAGCCAGGGATCGGCCCGATCCCCCT-TGCATGCTGTCAAT
* *
20486479 CCTGCTGCAACAACTCTCGA-TCCGACT-GGG
129 CCTGCTGCAACAA-TC-CGAGTCC-ACTCAGA
* *
20486509 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACG-GACGTACGGGCACTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAG-CGTACGGGCGCTCA
* * * * * * *
20486573 GCCAGTCGGAGAGGCAGAATGCGCAAG-TAGGGGATCAGCCTGGTCCCCCTTGCGTGCTG
65 GCCAGTCGGAGAGGCAAAATGTGCAAGCCA-GGGATCGGCCCGATCCCCCTTGCATGCTG
20486632 CTGATCCTAC
Statistics
Matches: 226, Mismatches: 48, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 92 0.41
158 33 0.15
159 95 0.42
160 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCAGTCGGAGAGGCAAAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTTGCATGCTGTCAATCC
TGCTGCAACAATCCGAGTCCACTCAGA
Found at i:20487345 original size:355 final size:352
Alignment explanation
Indices: 20486505--20487541 Score: 1110
Period size: 368 Copynumber: 2.8 Consensus size: 352
20486495 TCGATCCGAC
** * *
20486505 TGGGGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACG-GACGTACGGGCA
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCG
* * * * *
20486569 CTCAGCCAGTCGGAGAGGCAGAATGCGCAAGTAGGGGATCAGCCTGGTCCCCCTTGCGTGCTGCT
65 CTCAGCGA-TCGGAGAGGTAGAATGTGCAAGTCGAGGATCAGCCTGGTCCCCCTTGCGTGCTGC-
* *
20486634 GATCCTACTGTCGCAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAG
128 GATCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
20486699 ACT-GGAGATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAACGTGCAGGCGCTCAGCCGAT
193 ACTAGG-GATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGAC
* * * *
20486763 CGGAGAGGCCATCCGGAGAGGCATAATGAGCAAGCTGGGTATCAACCCGGCCCCCCTCTGCGTGC
257 CGGAGAGG-CA--C----A---AT-A--CGCAAGCTGGG-ATCAGCCCGGTCCCCCTCTACGTGC
*
20486828 TGTCGATCCCGCTGCCAGTCCTGCTACCATAACCCTCGGTCTGGT
308 TGTCGATCCCGCTGCCAGTCCTGCTACCACAACCCTCGGTCTGGT
* * * * *
20486873 TGGGGCTTAGACATGGAATGAACTTCGTATGCCTAATCCAACCCACGAAATGAGCGTGTGGGTGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* * * * *
20486938 CCAGCCGATCGGAGAGGTAGAATGTGCAAGCCGAAGATCAGCCCGGTCCCCCTTACGTGCTGTCG
66 TCAG-CGATCGGAGAGGTAGAATGTGCAAGTCGAGGATCAGCCTGGTCCCCCTTGCGTGCTG-CG
* *
20487003 ATCCTACTGTCGCAACCCTCGGTCCGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCTTAGA
129 ATCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
20487068 CTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTCCGGGAGCTCAGCCGACCG
194 CTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCG
* * *
20487133 AAGAGGCACAATACGCAAGCTAGGGATCAGCCCGATCCCCCTCTACGTGCTG-CAGATCTCGCTG
259 GAGAGGCACAATACGCAAGCT-GGGATCAGCCCGGTCCCCCTCTACGTGCTGTC-GATCCCGCTG
** *
20487197 CTGGTCCTGCTACCACAACCCTGGGTCTGGT
322 CCAGTCCTGCTACCACAACCCTCGGTCTGGT
* * *
20487228 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* * * * *
20487293 TTAGTCGATTGGAGAGGTAGAATGTGTAAATCGAGGATCAGCCTGATCCCCCTTGCGTGCTGCCG
66 TCAG-CGATCGGAGAGGTAGAATGTGCAAGTCGAGGATCAGCCTGGTCCCCCTTGCGTGCTG-CG
* *
20487358 ATCTTGCTACTGGTCCTGCTGCCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTC
129 ATC---CTA------CTG-T--CGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
* * ** * * *
20487423 CATATGCTTAGAC-ATGGAATGAACTCCATATGTCGAAGCCAACCCACGAAACGAGCGTACGGGC
182 CGTATGCTTAGACTA-GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
* * * * * *
20487487 GCTCAGCTGACCGGAGAGGCAAAATGCGTAAGCTGGGGATCGGTCCGGTCCCCCT
246 GCTCAGCCGACCGGAGAGGCACAATACGCAAGCT-GGGATCAGCCCGGTCCCCCT
20487542 GCGTGCTACC
Statistics
Matches: 565, Mismatches: 85, Indels: 39
0.82 0.12 0.06
Matches are distributed among these distances:
354 1 0.00
355 179 0.32
356 3 0.01
357 1 0.00
358 5 0.01
361 1 0.00
364 3 0.01
365 2 0.00
366 1 0.00
367 139 0.25
368 224 0.40
369 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (352 bp):
TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCGATCGGAGAGGTAGAATGTGCAAGTCGAGGATCAGCCTGGTCCCCCTTGCGTGCTGCGAT
CCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
AGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGA
GAGGCACAATACGCAAGCTGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCAG
TCCTGCTACCACAACCCTCGGTCTGGT
Found at i:20487432 original size:26 final size:26
Alignment explanation
Indices: 20487403--20487454 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20487393 CCAGTCTGAT
20487403 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
20487429 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
20487455 TCGAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:20487615 original size:26 final size:26
Alignment explanation
Indices: 20487586--20487638 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20487576 CCGTTCTGAT
*
20487586 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20487612 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20487638 C
1 C
20487639 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20488559 original size:26 final size:26
Alignment explanation
Indices: 20488517--20488569 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20488507 GGCTCAAAAT
20488517 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20488543 CTTAGAC-ATGGATTGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
20488569 C
1 C
20488570 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20489544 original size:157 final size:155
Alignment explanation
Indices: 20489067--20489566 Score: 465
Period size: 157 Copynumber: 3.2 Consensus size: 155
20489057 AACTCGTATG
* * *
20489067 CTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCAC-AAACGGGAGTGC-GGCGCTCAAC
* * * * * *
20489132 CTGTCGGAGAGGCAGAATGTGCAAGCCGGGG-TCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
63 CGGTCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCT
* *
20489196 GCTGCCGCAACCCTCGATCCTGTCTGAT
128 GCTACCGCAACCCTCGATCCTGTCCGAT
* * * * * *
20489224 CTTAAAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCTAACCAA-GGAGTGTGCGAGCGTTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC--ACAAACGG-GAGTGCG-GCGCTCA
* ** * * ** * * *
20489287 GCCGACCAGAAAGACATAATGCGGGAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGT
61 ACCGGTCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCTCTGCGTGCTGTCGAT
* * * **
20489352 CCTGCTACCACAACCCTC-AGT-CTGGCTGGGG
125 CCTGCTACCGCAACCCTCGA-TCCTGTC-CGAT
* * *
20489383 CTTAGACATGGAATAAACCCCCTATGCCTAAGCCAACACACGAAACGGGAG-GCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-CAC-AAACGGGAGTGC-GGCGCTCAAC
* *
20489447 CGGTCAGAAAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTAGATCCT
63 CGGTCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCT
* *
20489512 GCTATCGCAACCCTCGATCCAGTCCGAT
128 GCTACCGCAACCCTCGATCCTGTCCGAT
20489540 CTTAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
20489567 TTAGACTAGG
Statistics
Matches: 265, Mismatches: 61, Indels: 34
0.74 0.17 0.09
Matches are distributed among these distances:
156 6 0.02
157 122 0.46
158 64 0.24
159 69 0.26
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACAAACGGGAGTGCGGCGCTCAACCGG
TCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTGCT
ACCGCAACCCTCGATCCTGTCCGAT
Found at i:20489569 original size:26 final size:26
Alignment explanation
Indices: 20489540--20489592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20489530 CCAGTCCGAT
20489540 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20489566 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20489592 C
1 C
20489593 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20490301 original size:26 final size:26
Alignment explanation
Indices: 20490263--20490315 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20490253 GGCTCAAACT
20490263 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20490289 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20490315 C
1 C
20490316 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20490624 original size:157 final size:159
Alignment explanation
Indices: 20490288--20490624 Score: 378
Period size: 159 Copynumber: 2.1 Consensus size: 159
20490278 AACTCCGTAT
*
20490288 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGCGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGCGCGTGCAGGCGCTCAA
** * * * * *
20490353 CCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTTCAGCATGCTACCGGTC
66 CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTCAGCATGCTACCGATC
* *
20490418 CCGCTGCCACAACCCTCGGTCTGGCTGGG
131 CCGCTACCACAACCCTCGGTCTGGCTGGA
* * * *
20490447 GCTTAGACATGGAATAAACTCCCTGTGCCTAAGCCAACCCACGAAACGCGCGTG-GGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGCGCGTGCAGGCGCTCAA
* * ** ** * * *
20490511 CCGACCGAAGAGGTAGAATGCATAAGCTGGGGATCGGTTCGGTCCCCC-CTA-CGTGCTACTGAT
66 CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTC-AGCATGCTACCGAT
**
20490574 CTTGCTACCACAACCCTCGGTCTGGTCT-GA
130 CCCGCTACCACAACCCTCGGTCTGG-CTGGA
*
20490604 TCTTAGAC-TAGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
20490625 TGTATGCTTA
Statistics
Matches: 148, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
156 1 0.01
157 50 0.34
158 46 0.31
159 51 0.34
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGCGCGTGCAGGCGCTCAA
CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTCAGCATGCTACCGATC
CCGCTACCACAACCCTCGGTCTGGCTGGA
Found at i:20490634 original size:26 final size:26
Alignment explanation
Indices: 20490605--20490657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20490595 CTGGTCTGAT
*
20490605 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20490631 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20490657 C
1 C
20490658 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20490883 original size:26 final size:26
Alignment explanation
Indices: 20490854--20490906 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20490844 CCTGTCTAAT
*
20490854 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20490880 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20490906 C
1 C
20490907 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20491927 original size:26 final size:26
Alignment explanation
Indices: 20491891--20491943 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20491881 CTAGCTTGAT
20491891 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
20491917 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20491943 C
1 C
20491944 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20493220 original size:157 final size:156
Alignment explanation
Indices: 20492934--20493466 Score: 549
Period size: 157 Copynumber: 3.4 Consensus size: 156
20492924 CTACTGCTGG
*
20492934 TCCTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGTCGCAACCCTCGTTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * ** *
20492999 CAGCCCATGAAATGAGTGTGTGGCCATTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGAT
66 CAACCCATGAAACGAGCGTCAGG-CACTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGAT
*
20493064 CGGCACGATCCCCCTGCGTGCCGTCGA
130 CGGCACGATCCCCCTGCGTGCTGTCGA
*
20493091 TCCTGCTATCGCAACCCTCAGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGTCGCAACCCTC-GTTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
20493155 TCAACCCATGAAACGAGCGTACAGGCACTGAGCAGGTCGGAGAGGCATAATGTGCAAGCCGGGGA
65 CCAACCCATGAAACGAGCGT-CAGGCACTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGA
*
20493220 TCGGCCCGATCCCCCTCGGCGTGCTGTCGA
129 TCGGCACGATCCCCCT--GCGTGCTGTCGA
* * * * ** *
20493250 T-CTCGCTGCCACAACCCTCGGTT-T-GACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCT
1 TCCT-GCTGTCGCAACCCTC-GTTCTGGTC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCT
* * ** * **
20493311 AAGCCAACCCATGAAAC-AGGCATGCGGGTGCCCAGCCGGTCGGAGAGGCAGAATACGCAAGCCG
62 AAGCCAACCCATGAAACGA-GCGT-CAGGCACTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCG
** * * * *
20493375 AAGATC-GAACCAGCCCCTCCTGCGTGCTATCGA
125 GGGATCGGCACGA-TCCC-CCTGCGTGCTGTCGA
** * * *
20493408 TCCTGCTGTCGCAACCCTCGACCTGATCCAATCTTAGACTGGGAATGAACTCTGTATGC
1 TCCTGCTGTCGCAACCCTCGTTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
20493467 TTAGACTGGG
Statistics
Matches: 307, Mismatches: 54, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
157 127 0.41
158 62 0.20
159 114 0.37
160 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
TCCTGCTGTCGCAACCCTCGTTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGAGCGTCAGGCACTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATC
GGCACGATCCCCCTGCGTGCTGTCGA
Found at i:20493476 original size:26 final size:26
Alignment explanation
Indices: 20493440--20493492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20493430 CTGATCCAAT
*
20493440 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20493466 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20493492 C
1 C
20493493 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20494213 original size:25 final size:25
Alignment explanation
Indices: 20494163--20494213 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
20494153 GGCTCAAACT
*
20494163 CTTAGACTGGAATGAACTCTGAATG
1 CTTAGACTGGAATGAACTCCGAATG
*
20494188 CTTAGACAT-GAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGAATG
20494213 C
1 C
20494214 CTAAGGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGAATG
Found at i:20494518 original size:158 final size:158
Alignment explanation
Indices: 20494188--20494529 Score: 372
Period size: 158 Copynumber: 2.2 Consensus size: 158
20494178 ACTCTGAATG
* * * *
20494188 CTTAGACAT-GAATGAACTCCGTATGCCTAAGGCAACCCATGAATGAGCGTGCAGGTGCTCAGCC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAACGAGCGTGCAGGCGCTCAGCC
* ** * * * *
20494252 GGCTGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCTCTGCTTGCTGCCGGTCTG
66 AGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCATGCTGCCGATCTG
* *
20494317 GCTGCCACAACCCTCAGTTCGGCTGGGA
131 GCTACCACAACCCTCAGTCCGGCTGGGA
* * * *
20494345 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AACGAGCGTGCAGGCGCTCAGC
* **
20494410 CAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GATCCCCC-CTGCATGCTTTCGATC
65 CAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAG-TCCCCCTCTGCATGCTGCCGAT-
* ** **
20494473 CT-GCTACCGCAACCCTTGGTCCGG-TTTGA
128 CTGGCTACCACAACCCTCAGTCCGGCTGGGA
20494502 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 -CTTAGACAT-GGAATGAACTCCGTATGC
20494530 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
157 13 0.08
158 81 0.53
159 59 0.39
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAACGAGCGTGCAGGCGCTCAGCC
AGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCATGCTGCCGATCTG
GCTACCACAACCCTCAGTCCGGCTGGGA
Found at i:20495274 original size:26 final size:26
Alignment explanation
Indices: 20495236--20495288 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20495226 GGCTCAAACT
*
20495236 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20495262 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20495288 C
1 C
20495289 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20495625 original size:25 final size:26
Alignment explanation
Indices: 20495579--20495630 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20495569 CCGGTCTGAT
20495579 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20495605 CTTAGATTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20495630 C
1 C
20495631 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20496339 original size:26 final size:26
Alignment explanation
Indices: 20496301--20496356 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
20496291 GGCTCAAACT
20496301 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20496327 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20496353 CTTA
1 CTTA
20496357 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20496684 original size:26 final size:26
Alignment explanation
Indices: 20496643--20496695 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20496633 CCAGTCCAAT
20496643 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20496669 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
20496695 C
1 C
20496696 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20496895 original size:26 final size:26
Alignment explanation
Indices: 20496857--20496909 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20496847 CCGGTCCGAT
20496857 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20496883 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20496909 C
1 C
20496910 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20503682 original size:26 final size:26
Alignment explanation
Indices: 20503653--20503705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20503643 CCGGTCCGAT
20503653 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20503679 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20503705 C
1 C
20503706 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20504412 original size:26 final size:26
Alignment explanation
Indices: 20504374--20504426 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20504364 GGCTCAAAAT
20504374 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20504400 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
20504426 C
1 C
20504427 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20504901 original size:158 final size:158
Alignment explanation
Indices: 20504400--20504901 Score: 515
Period size: 158 Copynumber: 3.2 Consensus size: 158
20504390 ACTCTGTATG
*
20504400 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGC
** * **
20504465 CGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATCCT
* * * * * *
20504530 ACTACCGTAACCATCGTTCT-AGTCTGAT
131 GCTGCCGCAACCCTCGGTCTGA-TTTGAT
* * * * * ** ** *
20504558 CTTAGAC-TGGGAATGAACTTTGTGTGCATAAGCCAACCAACGAAACGAGTGTGTAGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
* * ** * * * * *
20504622 CCGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAACTCGGTCCCCCTCTGCGTGTTACCGGTC
65 CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCC-CTACGTGCTACCGATC
* * * * * **
20504687 CCGCTGCCACAACCCTCGGTCCGACTGGGG
129 CTGCTGCCGCAACCCTCGGTCTGATTTGAT
** * * *
20504717 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGC
* * * *
20504782 CGACCGAAGAGGTAGAATTCATAAGCCAGGGATCAGCCCAGTCCCCCCTACGTGCTACCGATCCT
66 CGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATCCT
*
20504847 GCTGTCGCAACCCTCGGTCTGATTTGAT
131 GCTGCCGCAACCCTCGGTCTGATTTGAT
20504875 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCTGTATGC
20504902 TTAGATTGGG
Statistics
Matches: 263, Mismatches: 76, Indels: 10
0.75 0.22 0.03
Matches are distributed among these distances:
157 2 0.01
158 148 0.56
159 111 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGC
CGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATCCT
GCTGCCGCAACCCTCGGTCTGATTTGAT
Found at i:20504927 original size:26 final size:26
Alignment explanation
Indices: 20504875--20504927 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
20504865 CTGATTTGAT
* *
20504875 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
20504901 CTTAGATTGGGGATGAAGTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
20504927 C
1 C
20504928 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20505272 original size:26 final size:26
Alignment explanation
Indices: 20505243--20505295 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20505233 TCGATCCGAT
20505243 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20505269 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20505295 C
1 C
20505296 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20505613 original size:159 final size:155
Alignment explanation
Indices: 20505269--20505770 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 155
20505259 ACTCCGTATG
* *
20505269 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGA-ACGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGGGC-ATGCGGGCGCTCAG
* * * * * * *
20505333 CCGGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAACCTGGTCCCCCCCGCGTGCTGTCGATCC
64 CCGACCGGAGAGGCAGAATGCACAAGCCG-GGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
20505398 TGCTGCCGCAACCCTCGGTCCGGTCCGA
128 TGCTGCCACAACCCTCGGTCCGCTCCGA
* * *
20505426 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGGGCATGCGGGGGCTGA
1 -CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGGGCATGCGGGCGCTCA
* * * **
20505490 GCCGACCGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCTCTCTGCATGCTACCGAT
63 GCCGACCGGAGAGGCAGAATGCACAAGCC-GGGATCGACCCGATCCC-CCCTGCGTGCTGTCGAT
* **
20505555 CCCGCTGCCACAACCCTCGGTCCGACTGGGGA
126 CCTGCTGCCACAACCCTCGGTCCG-CT-CCGA
* * * * * *
20505587 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGGGCATGCGGGCGCTCAGC
* * * *
20505651 C-AGCTGGAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 CGA-CCGGAGAGGCAGAATGCACAAGCC-GGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * *
20505715 TACTGCCACAACCCTCAGTCTGGTTCGA
128 TGCTGCCACAACCCTCGGTCCGCTCCGA
20505743 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 -CTTAGACAT-GGAATGAACTCCGTATGC
20505771 ATAGACTGGG
Statistics
Matches: 283, Mismatches: 49, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 4 0.01
158 147 0.52
159 126 0.45
160 2 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGGGCATGCGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCACAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGC
TGCCACAACCCTCGGTCCGCTCCGA
Found at i:20505785 original size:26 final size:26
Alignment explanation
Indices: 20505746--20505796 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20505736 GGTTCGATCT
20505746 TAGACTAGGAATGAACTCCGTATGCA
1 TAGACTAGGAATGAACTCCGTATGCA
* *
20505772 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
20505797 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCA
Found at i:20506899 original size:159 final size:158
Alignment explanation
Indices: 20506503--20506949 Score: 465
Period size: 159 Copynumber: 2.8 Consensus size: 158
20506493 AACTCTGTAT
* * *
20506503 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCATGAAACA-AGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-AGAGCGTGCGGGCGCTCA
* * ** *
20506567 GTCAGCCGAAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATC
65 GTCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTCTCGATC
* * ** * *
20506632 CTGCTCCCCCAACCCTCGGTCCAGTCTGA
130 CCGCTCCCACAACCCTCACTCCAGGCAGA
* * * * * *
20506661 TCTTATAC-TAGGAATGAACTCCGTACGCATAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCA
* * * * *
20506725 GCCGACCGAAAAGGCATAATGCGCAAGCTGGGGATCGACCTGGTCCCCCTCTACGTGCTCTC-AG
65 GTCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCC-CTACGTGCTCTCGA-
* *
20506789 TCCCGCTGCCACAACCCTCACTCC-GGCAAGG
128 TCCCGCTCCCACAACCCTCACTCCAGGC-AGA
* * * * *
20506820 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * *
20506885 TCGGCC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGC-CGAT
66 TCGGCCGA-AGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCT-CTCGAT
20506948 CC
129 CC
20506950 TACTATCGTA
Statistics
Matches: 234, Mismatches: 46, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 110 0.47
159 121 0.52
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
TCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTCTCGATCC
CGCTCCCACAACCCTCACTCCAGGCAGA
Found at i:20507019 original size:25 final size:26
Alignment explanation
Indices: 20506979--20507030 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
20506969 CTGGTCCGAT
20506979 CTTAGACTAGGAATGAACT-CGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20507004 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20507030 C
1 C
20507031 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20507541 original size:26 final size:26
Alignment explanation
Indices: 20507503--20507555 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20507493 CCAGTCCGAT
20507503 CTTAGACTGGGAA-CGAACTCCATATG
1 CTTAGACTGGGAATC-AACTCCATATG
*
20507529 CTTAGACAT-GGAATCAACTCCCTATG
1 CTTAGAC-TGGGAATCAACTCCATATG
20507555 C
1 C
20507556 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:20507836 original size:159 final size:157
Alignment explanation
Indices: 20507529--20508030 Score: 560
Period size: 159 Copynumber: 3.2 Consensus size: 157
20507519 ACTCCATATG
* * *
20507529 CTTAGACAT-GGAATCAACTCCCTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * ** * * *
20507593 CCGGTCGGAGAGACAGAAAGCGTGAGCCGGGGACCAGCCCGATCCCACCCTGCGTGCTGTCGATC
65 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCC-CCCTACGTGCTGTCGGTC
* * * *
20507658 TTGTTGCCGTAACCATCGGTCCGATCTGAT
129 CTGCTGCCGCAACCCTCGGTCCG-TCTGAT
* * * * * *
20507688 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
** * * *
20507753 TGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCC
66 TGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTACGTGCTGTCGGTCC
* * * * **
20507818 CGCTGCCACCACCCTCGGTCCGGCTGGGG
130 TGCTGCCGCAACCCTCGGTCCGTCT-GAT
* * *
20507847 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTTCGGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
20507911 CTGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCAACCCGATCCCCCCTACGTGCTGTCGGTCC
65 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGGTCC
* *
20507975 TACCGCCGCAACCCTCGGTCCGGTCTGAT
130 TGCTGCCGCAACCCTCGGTCC-GTCTGAT
**
20508004 CTTAGGCTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
20508031 TTACACTGGG
Statistics
Matches: 279, Mismatches: 58, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
156 1 0.00
157 56 0.20
158 24 0.09
159 197 0.71
160 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
TGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGGTCCT
GCTGCCGCAACCCTCGGTCCGTCTGAT
Found at i:20508233 original size:50 final size:50
Alignment explanation
Indices: 20508158--20508257 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
20508148 TTCAAGCACA
20508158 TCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 TCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCAT
20508208 TCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 TCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCAT
20508258 ACAGTGGTCC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (50 bp):
TCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCAT
Found at i:20508829 original size:26 final size:26
Alignment explanation
Indices: 20508778--20508829 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
20508768 GCTCAAAATT
* *
20508778 TTAGACTGGGAAAGAACTTCGTATGC
1 TTAGACTGGGAAAGAACTCCGCATGC
*
20508804 TTAGACAT-GGAATGAACTCCGCATGC
1 TTAGAC-TGGGAAAGAACTCCGCATGC
20508830 CTAATCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGCATGC
Found at i:20509314 original size:26 final size:26
Alignment explanation
Indices: 20509278--20509330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20509268 ACGGTCTGAT
*
20509278 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20509304 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20509330 C
1 C
20509331 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20509818 original size:159 final size:158
Alignment explanation
Indices: 20509435--20509836 Score: 425
Period size: 158 Copynumber: 2.5 Consensus size: 158
20509425 TGTCGATCCC
* *
20509435 GCTGCCGGTCCTGCTGCCACAACCCTTGGTCCGACTAGGGCTTAGACATGGAATGAACTTCGC-A
1 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAAC-TCCCTA
* * * *
20509499 TACCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGTCAGCTAGAAAGGTAGAATGCGTAA
65 TGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGCTCAGCCAGCTAGAAAGGCAGAATGCGTAA
* *
20509564 ATCGGGGACCGACTTGGTCCCCCCTACGT
130 ATCAGGGACCGACCTGGTCCCCCCTACGT
* * * *** * * ** *
20509593 GCTGTCGATCCTGTTGTTGCAACCCTCGGTTCGA-TCCGATCTTAGAC-TGGGAATGAACTCCGT
1 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACT-AGGGCTTAGACAT-GGAATGAACTCCCT
* * * * * * *
20509656 ATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCTGAGCCGGC-CGAAGAGGCATAATGCGT
64 ATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGCTCAGCCAGCTAGAA-AGGCAGAATGCGT
* * * *
20509720 AAGTCAGGGATCGGCCTGGTCCCCCTCTGCGT
128 AAATCAGGGACCGACCTGGTCCCCC-CTACGT
* * *
20509752 GCTGCCGGTCCTGCTGCCACAACCCCCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTAT
*
20509817 GCCTAAGCCAACCCATGAAA
66 GCCTAAGCCAACCCACGAAA
20509837 CGGGTGTGCG
Statistics
Matches: 192, Mismatches: 45, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.04
158 112 0.58
159 71 0.37
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAATGAGCATGCGAGCGCTCAGCCAGCTAGAAAGGCAGAATGCGTAAA
TCAGGGACCGACCTGGTCCCCCCTACGT
Found at i:20510000 original size:26 final size:26
Alignment explanation
Indices: 20509950--20510000 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
20509940 CGGTCTGATC
**
20509950 TTAGACTAGGAATGAACTCTGTATGG
1 TTAGACTAGGAATGAACTCCATATGG
* *
20509976 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
20510001 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGG
Found at i:20510274 original size:158 final size:158
Alignment explanation
Indices: 20509987--20510600 Score: 635
Period size: 158 Copynumber: 3.9 Consensus size: 158
20509977 TAGACTGGGG
* * * * * * *
20509987 ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTG-GGGCACTCAGCCGACCGGAAAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGCCGGAGAGG
* * * * * * ** * *
20510051 CATAATGCGTAAGTCAGCGATCAGCCCAATCCCTCTCTGCATGCTGTCGATCCTGCTGCCACAAC
65 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAAC
*
20510116 CCTCAGTCCGACTGGGGCATAGACATGGA
130 CCTCAGTCCGACTGGGGCTTAGACATGGA
* * * **
20510145 ATGAACTCCGCATACCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGTTGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGCCGGAGAGG
* * * * * * *
20510210 CAGAATGCACAAGCCGGGGACCGGCCTGGTCCCTC-CTGCGTGCTGTCGATCCTGTTGTCGCAAC
65 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAAC
* **
20510274 CCTCAGTCCAATCT-GATCTTAGAC-TGGGA
130 CCTCAGTCCGA-CTGGGGCTTAGACAT-GGA
* * * * * *
20510303 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTGAGCCGGCCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGCCGGAGAGG
* * * *
20510368 CATAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAAC
65 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAAC
* * *
20510433 CCTCGGTCTGGCTGGGGCTTAGACATGGA
130 CCTCAGTCCGACTGGGGCTTAGACATGGA
* * * *
20510462 ATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCGGGCCGGAGACG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC-GGCCGGAGAGG
* * * * *
20510527 CAGAAAGTGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTATCGATCCTGCTGCCGCAAC
65 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAAC
*
20510591 CCTCGGTCCG
130 CCTCAGTCCG
20510601 GTCTGATCTT
Statistics
Matches: 368, Mismatches: 81, Indels: 14
0.79 0.17 0.03
Matches are distributed among these distances:
157 1 0.00
158 198 0.54
159 168 0.46
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCGGCCGGAGAGGC
AGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACC
CTCAGTCCGACTGGGGCTTAGACATGGA
Found at i:20510277 original size:658 final size:659
Alignment explanation
Indices: 20508805--20510712 Score: 2589
Period size: 658 Copynumber: 2.9 Consensus size: 659
20508795 TTCGTATGCT
* * * *
20508805 TAGACATGGAATGAACTCCGCATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA
1 TAGACATGGAATGAACTCCGCATACCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCA
* * * * *
20508870 ACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTGC
66 GCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTGT
* * * * * *
20508935 T-ACTACAACCCTTGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
131 TGTC-GCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * *
20508999 CACGAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAAAGGCATGGAAT--G-AACTCTTCTGCATG
195 CACGAAATGAGCATGCGGGTGCTGAGCCGGCCGAAGAGGCAT--AATGCGTAAGTC--CGGGAT-
* * * ** * *
20509061 CTGTCGATCCCCCTCTATGTGCTGCCGGTCCCGCTG-CAGCAACCCTCGGTCCGGTTGGGGCTTA
255 CGGCCGGTCCCCCTCTGCGTGCTGCCGGTCCTGCTGCCA-CAACCCTCGGTCCGGCTGGGGCTTA
* * * * * *
20509125 GACAT-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGCCAAG
319 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCCGAC
* * * ** *
20509189 CGGAGAGGCA-AAA-TGCACGAGCCAGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCTTGC
384 CGGAGACGCAGAAAGTGCA--AGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGC
* * *
20509252 TGTCGCAACCCTCGGTACGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGGGG
447 TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGGTTAGACTGGGG
*
20509316 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGGGGGCGCTCAGCCGACCGGAGAGG
511 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGT-GGGGCGCTCAGCCGACCGGAGAGG
* * *
20509381 TATAATGCGTAAGTCGGGGATCAGCCCAATCCCTCTCTGCATGCTGTCGATCCCGCTGCCGGTCC
575 CATAATGCGTAAGTCAGCGATCAGCCCAATCCCTCTCTGCATGCTGTCGA---------C--TCC
** *
20509446 TGCTGCCACAACCCTTGGTCCGACTAGGGCT
629 TGCTGCCACAACCCTCAGTCCGACTAGGGCA
* *
20509477 TAGACATGGAATGAACTTCGCATACCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGTCA
1 TAGACATGGAATGAACTCCGCATACCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCA
* * * * ** * *
20509542 GCTAGAAAGGTAGAATGCGTAAATCGGGGACCGACTTGGTCCCCCCTACGTGCTGTCGATCCTGT
66 GCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTGT
* * *
20509607 TGTTGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
131 TGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
*
20509672 ACGAAATGAGCATGCGGGTGCTGAGCCGGCCGAAGAGGCATAATGCGTAAGTCAGGGATCGGCCT
196 ACGAAATGAGCATGCGGGTGCTGAGCCGGCCGAAGAGGCATAATGCGTAAGTCCGGGATCGGCC-
* * *
20509737 GGTCCCCCTCTGCGTGCTGCCGGTCCTGCTGCCACAACCCCCAGTCCGACTGGGGCTTAGACATG
260 GGTCCCCCTCTGCGTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATG
**
20509802 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGAACGCTCAGCCGACCGGAGA
325 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCCGACCGGAGA
* * * *
20509867 TGCAGAAAGTGCAAGCTGGGGATCGGCCCGG-CCCCCCTACGTGCTACCGATCCTACTGCCGCAA
390 CGCAGAAAGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCAA
* *
20509931 ACCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGGTTAGACTGGGGATGAACTCC
455 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGACTGGGGATGAACTCC
* * * *
20509996 ATATGCCTAAGTCAACCCACGAAATGAGCGTGGGGCACTCAGCCGACCGGAAAGGCATAATGCGT
520 ATATGCCTAAGTCAACCCATGAAACGAGCGTGGGGCGCTCAGCCGACCGGAGAGGCATAATGCGT
20510061 AAGTCAGCGATCAGCCCAATCCCTCTCTGCATGCTGTCGA-TCCTGCTGCCACAACCCTCAGTCC
585 AAGTCAGCGATCAGCCCAATCCCTCTCTGCATGCTGTCGACTCCTGCTGCCACAACCCTCAGTCC
*
20510125 GACTGGGGCA
650 GACTAGGGCA
* *
20510135 TAGACATGGAATGAACTCCGCATACCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCG
1 TAGACATGGAATGAACTCCGCATACCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCA
* * * *
20510200 GTTGGAGAGGCAGAATGCACAAGCCGGGGACCGGCCTGGTCCCTCCTGCGTGCTGTCGATCCTGT
66 GCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTGT
* * *
20510265 TGTCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCC
131 TGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
20510330 ACGAAATGAGCATGCGGGTGCTGAGCCGGCCGAAGAGGCATAATGCGTAAG-CCGAGGATCGGCC
196 ACGAAATGAGCATGCGGGTGCTGAGCCGGCCGAAGAGGCATAATGCGTAAGTCCG-GGATCGG-C
* *
20510394 CGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACAT
259 CGGTCCCCCTCTGCGTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAT
* * *
20510459 GGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCGGGCCGGAG
324 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCCGACCGGAG
20510524 ACGCAGAAAGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCA
389 ACGCAGAAAGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCA
* **
20510589 ACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGGTTAGACTGGGGATGAACTC
454 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGACTGGGGATGAACTC
* *
20510654 CATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGACCAGAGAGGCA
519 CATATGCCTAAGTCAACCCATGAAACGAGCGTG-GGGCGCTCAGCCGACCGGAGAGGCA
20510713 GGATGCGCAA
Statistics
Matches: 1093, Mismatches: 129, Indels: 40
0.87 0.10 0.03
Matches are distributed among these distances:
657 2 0.00
658 410 0.38
659 123 0.11
660 21 0.02
670 75 0.07
671 170 0.16
672 281 0.26
673 7 0.01
674 4 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (659 bp):
TAGACATGGAATGAACTCCGCATACCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCA
GCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTGT
TGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAATGAGCATGCGGGTGCTGAGCCGGCCGAAGAGGCATAATGCGTAAGTCCGGGATCGGCCG
GTCCCCCTCTGCGTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCCGACCGGAGAC
GCAGAAAGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCAAC
CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGACTGGGGATGAACTCCA
TATGCCTAAGTCAACCCATGAAACGAGCGTGGGGCGCTCAGCCGACCGGAGAGGCATAATGCGTA
AGTCAGCGATCAGCCCAATCCCTCTCTGCATGCTGTCGACTCCTGCTGCCACAACCCTCAGTCCG
ACTAGGGCA
Found at i:20510578 original size:317 final size:316
Alignment explanation
Indices: 20509976--20510633 Score: 881
Period size: 317 Copynumber: 2.1 Consensus size: 316
20509966 CTCTGTATGG
* * *
20509976 TTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGGGGCACTCAGCCG
1 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGGGGCACTCAGCCG
* *
20510041 ACCGGAAAGGCATAATGCGTAAGTCAGCGATCAGCCCAATCCCTCTCTGCATGCTGTCGATCCTG
66 ACCGGAAAGGCATAATGCGTAAGCCAGCGATCAGCCCAATCCCCCTCTGCATGCTGTCGATCCTG
20510106 CTGCCACAACCCTCAGTCCGACTGGGGCATAGACATGGAATGAACTCCGCATACCTAAGCCAACC
131 CTGCCACAACCCTCAGTCCGACTGGGGCATAGACATGGAATGAACTCCGCATACCTAAGCCAACC
** * *
20510171 CATGAAACGAGCGTGCGAGCGCTCAGTCGGTTGGAGAGGCAGAATGCACAAGCCGGGGACCGGCC
196 CATGAAACGAGCGTGCGAGCGCTCAGTCGGCCGGAGACGCAGAAAGCACAAGCCGGGGACCGGCC
* * * * * *
20510236 TGGTCCCTCCTGCGTGCTGTCGATCCTGTTGTCGCAACCCTCAGTCCAATCTGATC
261 CGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCAATCTGATC
* ** *
20510292 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTGAGCC
1 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATG-GGGCACTCAGCC
* * ** * *
20510357 GGCC-GAAGAGGCATAATGCGTAAGCCGAG-GATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
65 GACCGGAA-AGGCATAATGCGTAAGCC-AGCGATCAGCCCAATCCCCCTCTGCATGCTGTCGATC
* * * * ** *
20510420 CTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCA
128 CTGCTGCCACAACCCTCAGTCCGACTGGGGCATAGACATGGAATGAACTCCGCATACCTAAGCCA
* * * ** *
20510485 ACCCATGAAACGGGTGTGCGGGCGCTCAG-CGGGCCGGAGACGCAGAAAGTGCAAGCCGGGGATC
193 ACCCATGAAACGAGCGTGCGAGCGCTCAGTC-GGCCGGAGACGCAGAAAGCACAAGCCGGGGACC
* **
20510549 GGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATC
257 GGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCAATCTGATC
*
20510609 TTAGATTGGGAATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
20510634 GTTAGACTGG
Statistics
Matches: 295, Mismatches: 43, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
316 52 0.18
317 241 0.82
318 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (316 bp):
TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGGGGCACTCAGCCG
ACCGGAAAGGCATAATGCGTAAGCCAGCGATCAGCCCAATCCCCCTCTGCATGCTGTCGATCCTG
CTGCCACAACCCTCAGTCCGACTGGGGCATAGACATGGAATGAACTCCGCATACCTAAGCCAACC
CATGAAACGAGCGTGCGAGCGCTCAGTCGGCCGGAGACGCAGAAAGCACAAGCCGGGGACCGGCC
CGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCAATCTGATC
Found at i:20510649 original size:26 final size:26
Alignment explanation
Indices: 20510609--20510659 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20510599 CGGTCTGATC
*
20510609 TTAGATTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
20510635 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
20510660 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:20511846 original size:158 final size:158
Alignment explanation
Indices: 20511353--20512479 Score: 969
Period size: 158 Copynumber: 7.1 Consensus size: 158
20511343 GCCTAGACAT
* * **
20511353 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * * * * * *
20511418 AGTCAGAATGCGCAAGCAGGGGATCGGCTCGGTCCCCCCTGTGTGTTGTCGATCCTGCTACCACA
66 AGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
* * * *
20511483 ACCCTCAGTCCGATCTGATCTTAGACTT
131 ACCCTCGGTCCGATCCGATCTTAGAATG
* * * ** * * * * *
20511511 GGAATGAAC-CCTGTATGCATATGTCAACCCATAAAACGAGCGTGCGGGCACTGACCCGGCCGAA
1 GGAATGAACTCC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGA
* * ** * ** * * * *
20511575 GAGGCATAATGCGTAAGTTGAGGATCGGCCTGGTCCCCTTTTACGTGCTG-CCAGTCCCGTTGCC
65 GAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCC-CCTGCGTGCTGTCGA-TCCTGCTGCC
* * ** *
20511639 ACAACCCTCGGTCCGGCTGGGGT-TTAGACAT-
128 GCAACCCTCGGTCC-GATCCGATCTTAGA-ATG
* * * * ** * * * * * *
20511670 GGAATGAATTCCCTATGCCTAAGCTAACTCGTGAAATGGGTGTGCGGGCACTCAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
** * * **
20511735 AGGCAGAATGCAAAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGCA
66 AGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
* *
20511800 ACCCTCGGTCCGATCCAATCTTAGATTG
131 ACCCTCGGTCCGATCCGATCTTAGAATG
* * * * *
20511828 GGAATGAACTCCGTATGCCTAA-CACAACCCATGAAACGAGCGTGCGGGTGCTGAACCGGCCGAA
1 GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGA
* * * ** *
20511892 GAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTACCCCTCTGCGTGCTGTCGGTCCCACTGCCA
65 GAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCCTGCGTGCTGTCGATCCTGCTGCCG
* * **
20511957 CAACCCTCGGTCCG-GCTGGGGCTTAGACAT-
129 CAACCCTCGGTCCGATC-CGATCTTAGA-ATG
* * **
20511987 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACTGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * *
20512052 AGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCTCCCTGCGTGCTGTCGATCCTGCTGCCGCA
66 AGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
* * * *
20512117 ACCCTCGGTTCGGTCTGATCTTAGACTG
131 ACCCTCGGTCCGATCCGATCTTAGAATG
* * * * * *
20512145 GGAATGAACTCCGTATGCATAAGTCAACTCACGAAACGAGCGTGCGGGCGCTGACCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * * * * *
20512210 AGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTG-CCAGTCCCGCTGCCA
66 AGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGA-TCCTGCTGCCG
* * **
20512274 CAACCTTCGGTCCGA-CTGGGGCTTAGACAT-
129 CAACCCTCGGTCCGATC-CGATCTTAGA-ATG
* * * * * * *
20512304 GGAATGAACTCCCTATGCCTAGGCCAACACACGAAACGGGCGTACGGGCACTCAACCAACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * * * *
20512369 AGGAAAAATGTGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTTCTGTCGCA
66 AGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
* * *
20512434 ACCCTCGATCCGGTCCGATCTTAGACTG
131 ACCCTCGGTCCGATCCGATCTTAGAATG
20512462 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
20512480 TTAGACTGGG
Statistics
Matches: 759, Mismatches: 187, Indels: 46
0.77 0.19 0.05
Matches are distributed among these distances:
157 9 0.01
158 379 0.50
159 361 0.48
160 10 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
AGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
ACCCTCGGTCCGATCCGATCTTAGAATG
Found at i:20511921 original size:317 final size:316
Alignment explanation
Indices: 20511346--20512479 Score: 1444
Period size: 317 Copynumber: 3.6 Consensus size: 316
20511336 TTCGTATGCC
* * *
20511346 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCG
* * * * * * *
20511411 GTCGGAGAGTCAGAATGCGCAAG-CAGGGGATCGGCTCGGTCCCCCCTGTGTGTTGTCGATCCTG
66 ATCGGAGAGGCAGAATGCACAAGCCA-AGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
* * * * * *
20511475 CTACCACAACCCTCAGTCCGATCTGATCTTAGACTTGGAATGAAC-CCTGTATGCATATGTCAAC
130 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC-GTATGCATAAGTCAAC
* * * **
20511539 CCATAAAACGAGCGTGCGGGCACTGACCCGGCCGAAGAGGCATAATGCGTAAGTTGAGGATCGGC
194 CCATGAAACGAGCGTGCGGGCGCTGACCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGC
* * * *
20511604 CTGGTCCCCTTTTACGTGCTGCCAGTCCCGTTGCCACAACCCTCGGTCCGGCTGGGGTT
259 CCGGTCCCC-TCTACGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCT
* * * ** * * * * *
20511663 TAGACATGGAATGAATTCCCTATGCCTAAGCTAACTCGTGAAATGGGTGTGCGGGCACTCAGCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCG
* * **
20511728 ATCGGAGAGGCAGAATGCAAAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCTGC
66 ATCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGC
* * * **
20511793 TGCCGCAACCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAACACAACCC
131 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC
* *
20511858 ATGAAACGAGCGTGCGGGTGCTGAACCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCC
196 ATGAAACGAGCGTGCGGGCGCTGACCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCC
* * * *
20511923 GGTACCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCT
261 GGT-CCCCTCTACGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCT
* * * * *
20511980 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACTG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCG
* ** * *
20512045 GTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCTCCCTGCGTGCTGTCGATCCTGC
66 ATCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGC
* * * *
20512110 TGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACTC
131 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC
* * * *
20512175 ACGAAACGAGCGTGCGGGCGCTGACCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCC
196 ATGAAACGAGCGTGCGGGCGCTGACCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCC
* *
20512240 GGTCCCCCTCTACGTGCTGCCAGTCCCGCTGCCACAACCTTCGGTCCGACTGGGGCT
261 GGT-CCCCTCTACGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCT
* * * *
20512297 TAGACATGGAATGAACTCCCTATGCCTAGGCCAACACACGAAACGGGCGTACGGGCACTCAACCA
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCG
* * * ** * * *
20512362 ACCGGAGAGGAAAAATGTGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTTC
66 ATCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGC
* * *
20512427 TGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
20512480 TTAGACTGGG
Statistics
Matches: 698, Mismatches: 116, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
317 690 0.99
318 8 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (316 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCG
ATCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC
ATGAAACGAGCGTGCGGGCGCTGACCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCC
GGTCCCCTCTACGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCT
Found at i:20512532 original size:26 final size:26
Alignment explanation
Indices: 20512455--20512534 Score: 133
Period size: 26 Copynumber: 3.1 Consensus size: 26
20512445 GGTCCGATCT
*
20512455 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCC
*
20512481 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
20512507 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
20512533 TA
1 TA
20512535 AGCCAACCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:20512804 original size:158 final size:158
Alignment explanation
Indices: 20512507--20512807 Score: 345
Period size: 158 Copynumber: 1.9 Consensus size: 158
20512497 TCCGTATGCC
* * * * *
20512507 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGTTCAGTCG
1 TAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGCCG
* * * * * * *
20512572 ATCGGAGAGATAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTAC
66 ACCGAAGAGACAGAATGCGCAAGCCGGGGATCCGCCCGATCCCCCTTGCGTGCTGCCGATCCCAC
*
20512637 TGCCGCAACCCTCGGTCTGGTCCGATCT
131 TGCCACAACCCTCGGTCTGGTCCGATCT
* * * * * *
20512665 TAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGAGCCG
1 TAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGCCG
* * * *
20512730 GCCGAAGAGGCATAATGCGCAAGCCGGGGATCCGCCC-AGT-CCCCTCTGCGTGCTGCCGGTCCC
66 ACCGAAGAGACAGAATGCGCAAGCCGGGGATCCGCCCGA-TCCCCCT-TGCGTGCTGCCGATCCC
**
20512793 GTTGCCACAACCCTC
129 ACTGCCACAACCCTC
20512808 AGTCCGACTG
Statistics
Matches: 116, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
157 6 0.05
158 110 0.95
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
TAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGCCG
ACCGAAGAGACAGAATGCGCAAGCCGGGGATCCGCCCGATCCCCCTTGCGTGCTGCCGATCCCAC
TGCCACAACCCTCGGTCTGGTCCGATCT
Found at i:20513029 original size:26 final size:26
Alignment explanation
Indices: 20512979--20513031 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20512969 TCGGTTCGAT
* **
20512979 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
20513005 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20513031 C
1 C
20513032 CCAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20513641 original size:11 final size:11
Alignment explanation
Indices: 20513610--20513642 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
20513600 CGGTTAGGCT
20513610 CTCCGACGATG
1 CTCCGACGATG
20513621 CTCC-AGCGATG
1 CTCCGA-CGATG
20513632 CTCCGACGATG
1 CTCCGACGATG
20513643 GTGCCCCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:20513752 original size:26 final size:26
Alignment explanation
Indices: 20513714--20513764 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20513704 CTCAAAATCT
*
20513714 TAGACTGGAAATGAACTTCGTATGCG
1 TAGACTGGAAATGAACTCCGTATGCG
20513740 TAGACGTGG-AATGAACTCCGTATGC
1 TAGAC-TGGAAATGAACTCCGTATGC
20513765 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCG
Done.